##fileformat=VCFv4.2
##FILTER=<ID=GOF,Description="Variant fails goodness-of-fit test.">
##FILTER=<ID=HapScore,Description="Too many haplotypes are supported by the data in this region.">
##FILTER=<ID=MQ,Description="Root-mean-square mapping quality across calling region is low.">
##FILTER=<ID=Q20,Description="Variant quality is below 20.">
##FILTER=<ID=QD,Description="Variants fail quality/depth filter.">
##FILTER=<ID=QualDepth,Description="Variant quality/Read depth ratio is low.">
##FILTER=<ID=REFCALL,Description="This line represents a homozygous reference call">
##FILTER=<ID=SC,Description="Variants fail sequence-context filter. Surrounding sequence is low-complexity">
##FILTER=<ID=alleleBias,Description="Variant frequency is lower than expected for het">
##FILTER=<ID=badReads,Description="Variant supported only by reads with low quality bases close to variant position, and not present on both strands.">
##FILTER=<ID=hp10,Description="Flanking sequence contains homopolymer of length 10 or greater">
##FILTER=<ID=strandBias,Description="Variant fails strand-bias filter">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=AF,Number=1,Type=Float,Description="Allelic frequency for the alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.8-1-0-gf15c1c3ef,Date="Fri Jul 11 17:11:11 UTC 2025",Epoch=1752253871594,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/data/MoCha/patidarr/ref/ucsc.hg19.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=10000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=true use_jdk_inflater=true disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=HC source=/lscratch/62323058//HC.vcf)]), (RodBindingCollection [(RodBinding name=Platypus source=/lscratch/62323058//PL.vcf)])] out=/vf/users/MoCha/processedDATA/397859/20170910/397859~316-R~J2-PDC~WES/calls/397859~316-R~J2-PDC~WES.merged.vcf genotypemergeoption=PRIORITIZE filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=HC,Platypus printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=ALERT,Number=0,Type=Flag,Description="Variant is adjacent to other variants, but case was too complex for joinAdjacentSNPs to handle. Please review.">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BRF,Number=1,Type=Float,Description="Fraction of reads around this variant that failed filters">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Combined depth across samples">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FR,Number=.,Type=Float,Description="Estimated population frequency of variant">
##INFO=<ID=FS,Number=.,Type=Float,Description="Fisher's exact test for strand bias (Phred scale)">
##INFO=<ID=HP,Number=1,Type=Integer,Description="Homopolymer run length around variant locus">
##INFO=<ID=HapScore,Number=.,Type=Integer,Description="Haplotype score measuring the number of haplotypes the variant is segregating into in a window">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=JOINED,Number=0,Type=Flag,Description="Variant is the result of joining adjacent SNPs/MNPs. Please use caution when interpreting sample-specific values.">
##INFO=<ID=MGOF,Number=.,Type=Integer,Description="Worst goodness-of-fit value reported across all samples">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts, for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=MMLQ,Number=1,Type=Float,Description="Median minimum base quality for bases around variant">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NF,Number=.,Type=Integer,Description="Total number of forward reads containing this variant">
##INFO=<ID=NR,Number=.,Type=Integer,Description="Total number of reverse reads containing this variant">
##INFO=<ID=PP,Number=.,Type=Float,Description="Posterior probability (phred scaled) that this variant segregates">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant-quality/read-depth for this variant">
##INFO=<ID=ReadPosRankSum,Number=.,Type=Float,Description="Mann-Whitney Rank sum test for difference between in positions of variants in reads from ref and alt">
##INFO=<ID=SC,Number=1,Type=String,Description="Genomic sequence 10 bases either side of variant position">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=START,Number=.,Type=Integer,Description="Start position of reference call block">
##INFO=<ID=SbPval,Number=.,Type=Float,Description="Binomial P-value for strand bias test">
##INFO=<ID=Size,Number=.,Type=Integer,Description="Size of reference call block">
##INFO=<ID=Source,Number=.,Type=String,Description="Was this variant suggested by Playtypus, Assembler, or from a VCF?">
##INFO=<ID=TC,Number=1,Type=Integer,Description="Total coverage at this locus">
##INFO=<ID=TCF,Number=1,Type=Integer,Description="Total forward strand coverage at this locus">
##INFO=<ID=TCR,Number=1,Type=Integer,Description="Total reverse strand coverage at this locus">
##INFO=<ID=TR,Number=.,Type=Integer,Description="Total number of reads containing this variant">
##INFO=<ID=WE,Number=1,Type=Integer,Description="End position of calling window">
##INFO=<ID=WS,Number=1,Type=Integer,Description="Starting position of calling window">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##SentieonCommandLine.Haplotyper=<ID=Haplotyper,Version="sentieon-genomics-201711",Date="2025-07-11T17:06:08Z",CommandLine="/data/MoCha/patidarr/sentieon/sentieon-genomics-201711/libexec/driver --temp_dir /lscratch/62321203// -t 26 -r /data/MoCha/patidarr/ref/ucsc.hg19.fasta -i 397859/20170910/397859~316-R~J2-PDC~WES/397859~316-R~J2-PDC~WES.bwa.final.bam --interval /data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed --algo Haplotyper -d /data/MoCha/patidarr/ref/dbsnp_138.hg19.vcf --min_base_qual 20 --min_map_qual 30 /lscratch/62321203//397859~316-R~J2-PDC~WES.HC_DNASeq.raw.vcf">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
##contig=<ID=chr3,length=198022430,assembly=hg19>
##contig=<ID=chr4,length=191154276,assembly=hg19>
##contig=<ID=chr5,length=180915260,assembly=hg19>
##contig=<ID=chr6,length=171115067,assembly=hg19>
##contig=<ID=chr7,length=159138663,assembly=hg19>
##contig=<ID=chr8,length=146364022,assembly=hg19>
##contig=<ID=chr9,length=141213431,assembly=hg19>
##contig=<ID=chr10,length=135534747,assembly=hg19>
##contig=<ID=chr11,length=135006516,assembly=hg19>
##contig=<ID=chr12,length=133851895,assembly=hg19>
##contig=<ID=chr13,length=115169878,assembly=hg19>
##contig=<ID=chr14,length=107349540,assembly=hg19>
##contig=<ID=chr15,length=102531392,assembly=hg19>
##contig=<ID=chr16,length=90354753,assembly=hg19>
##contig=<ID=chr17,length=81195210,assembly=hg19>
##contig=<ID=chr18,length=78077248,assembly=hg19>
##contig=<ID=chr19,length=59128983,assembly=hg19>
##contig=<ID=chr20,length=63025520,assembly=hg19>
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##contig=<ID=chr22,length=51304566,assembly=hg19>
##contig=<ID=chrX,length=155270560,assembly=hg19>
##contig=<ID=chrY,length=59373566,assembly=hg19>
##contig=<ID=chr1_gl000191_random,length=106433,assembly=hg19>
##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
##contig=<ID=chr4_ctg9_hap1,length=590426,assembly=hg19>
##contig=<ID=chr4_gl000193_random,length=189789,assembly=hg19>
##contig=<ID=chr4_gl000194_random,length=191469,assembly=hg19>
##contig=<ID=chr6_apd_hap1,length=4622290,assembly=hg19>
##contig=<ID=chr6_cox_hap2,length=4795371,assembly=hg19>
##contig=<ID=chr6_dbb_hap3,length=4610396,assembly=hg19>
##contig=<ID=chr6_mann_hap4,length=4683263,assembly=hg19>
##contig=<ID=chr6_mcf_hap5,length=4833398,assembly=hg19>
##contig=<ID=chr6_qbl_hap6,length=4611984,assembly=hg19>
##contig=<ID=chr6_ssto_hap7,length=4928567,assembly=hg19>
##contig=<ID=chr7_gl000195_random,length=182896,assembly=hg19>
##contig=<ID=chr8_gl000196_random,length=38914,assembly=hg19>
##contig=<ID=chr8_gl000197_random,length=37175,assembly=hg19>
##contig=<ID=chr9_gl000198_random,length=90085,assembly=hg19>
##contig=<ID=chr9_gl000199_random,length=169874,assembly=hg19>
##contig=<ID=chr9_gl000200_random,length=187035,assembly=hg19>
##contig=<ID=chr9_gl000201_random,length=36148,assembly=hg19>
##contig=<ID=chr11_gl000202_random,length=40103,assembly=hg19>
##contig=<ID=chr17_ctg5_hap1,length=1680828,assembly=hg19>
##contig=<ID=chr17_gl000203_random,length=37498,assembly=hg19>
##contig=<ID=chr17_gl000204_random,length=81310,assembly=hg19>
##contig=<ID=chr17_gl000205_random,length=174588,assembly=hg19>
##contig=<ID=chr17_gl000206_random,length=41001,assembly=hg19>
##contig=<ID=chr18_gl000207_random,length=4262,assembly=hg19>
##contig=<ID=chr19_gl000208_random,length=92689,assembly=hg19>
##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
##contig=<ID=chr21_gl000210_random,length=27682,assembly=hg19>
##contig=<ID=chrUn_gl000211,length=166566,assembly=hg19>
##contig=<ID=chrUn_gl000212,length=186858,assembly=hg19>
##contig=<ID=chrUn_gl000213,length=164239,assembly=hg19>
##contig=<ID=chrUn_gl000214,length=137718,assembly=hg19>
##contig=<ID=chrUn_gl000215,length=172545,assembly=hg19>
##contig=<ID=chrUn_gl000216,length=172294,assembly=hg19>
##contig=<ID=chrUn_gl000217,length=172149,assembly=hg19>
##contig=<ID=chrUn_gl000218,length=161147,assembly=hg19>
##contig=<ID=chrUn_gl000219,length=179198,assembly=hg19>
##contig=<ID=chrUn_gl000220,length=161802,assembly=hg19>
##contig=<ID=chrUn_gl000221,length=155397,assembly=hg19>
##contig=<ID=chrUn_gl000222,length=186861,assembly=hg19>
##contig=<ID=chrUn_gl000223,length=180455,assembly=hg19>
##contig=<ID=chrUn_gl000224,length=179693,assembly=hg19>
##contig=<ID=chrUn_gl000225,length=211173,assembly=hg19>
##contig=<ID=chrUn_gl000226,length=15008,assembly=hg19>
##contig=<ID=chrUn_gl000227,length=128374,assembly=hg19>
##contig=<ID=chrUn_gl000228,length=129120,assembly=hg19>
##contig=<ID=chrUn_gl000229,length=19913,assembly=hg19>
##contig=<ID=chrUn_gl000230,length=43691,assembly=hg19>
##contig=<ID=chrUn_gl000231,length=27386,assembly=hg19>
##contig=<ID=chrUn_gl000232,length=40652,assembly=hg19>
##contig=<ID=chrUn_gl000233,length=45941,assembly=hg19>
##contig=<ID=chrUn_gl000234,length=40531,assembly=hg19>
##contig=<ID=chrUn_gl000235,length=34474,assembly=hg19>
##contig=<ID=chrUn_gl000236,length=41934,assembly=hg19>
##contig=<ID=chrUn_gl000237,length=45867,assembly=hg19>
##contig=<ID=chrUn_gl000238,length=39939,assembly=hg19>
##contig=<ID=chrUn_gl000239,length=33824,assembly=hg19>
##contig=<ID=chrUn_gl000240,length=41933,assembly=hg19>
##contig=<ID=chrUn_gl000241,length=42152,assembly=hg19>
##contig=<ID=chrUn_gl000242,length=43523,assembly=hg19>
##contig=<ID=chrUn_gl000243,length=43341,assembly=hg19>
##contig=<ID=chrUn_gl000244,length=39929,assembly=hg19>
##contig=<ID=chrUn_gl000245,length=36651,assembly=hg19>
##contig=<ID=chrUn_gl000246,length=38154,assembly=hg19>
##contig=<ID=chrUn_gl000247,length=36422,assembly=hg19>
##contig=<ID=chrUn_gl000248,length=39786,assembly=hg19>
##contig=<ID=chrUn_gl000249,length=38502,assembly=hg19>
##fileDate=2025-07-11
##joinAdjacentSNPs_command=/data/MoCha/patidarr/ngs_pipeline/scripts/joinAdjacentSNPs_up.py -v 397859/20170910/397859~316-R~J2-PDC~WES/calls/397859~316-R~J2-PDC~WES.HC_DNASeq.raw.vcf -o /lscratch/62323058//HC.vcf.tmp 1 397859/20170910/397859~316-R~J2-PDC~WES/397859~316-R~J2-PDC~WES.bwa.final.bam /data/MoCha/patidarr/ref/ucsc.hg19.2bit
##platypusOptions={'assemblyRegionSize': 1500, 'trimReadFlank': 0, 'assembleBadReads': 1, 'bamFiles': ['397859/20170910/397859~316-R~J2-PDC~WES/397859~316-R~J2-PDC~WES.bam'], 'minVarDist': 9, 'trimSoftClipped': 1, 'minReads': 2, 'qualBinSize': 1, 'refFile': '/data/MoCha/patidarr/ref/ucsc.hg19.fasta', 'maxHaplotypes': 50, 'filterVarsByCoverage': 1, 'maxSize': 1500, 'originalMaxHaplotypes': 50, 'skipDifficultWindows': 0, 'parseNCBI': 0, 'skipRegionsFile': None, 'noCycles': 0, 'trimAdapter': 1, 'minPosterior': 5, 'assembleAll': 1, 'trimOverlapping': 1, 'filterDuplicates': 1, 'abThreshold': 0.001, 'minFlank': 10, 'bufferSize': 1000000, 'fileCaching': 0, 'useEMLikelihoods': 0, 'coverageSamplingLevel': 30, 'calculateFlankScore': 0, 'logFileName': 'log/platypus.397859.20170910.397859~316-R~J2-PDC~WES', 'nCPU': 32, 'filterReadsWithUnmappedMates': 1, 'qdThreshold': 10, 'maxVariants': 8, 'scThreshold': 0.95, 'filterReadsWithDistantMates': 1, 'maxReads': 100000000.0, 'badReadsWindow': 11, 'genIndels': 1, 'largeWindows': 0, 'minMapQual': 20, 'maxVarDist': 15, 'maxGOF': 30, 'rlen': 150, 'minGoodQualBases': 20, 'refCallBlockSize': 1000, 'countOnlyExactIndelMatches': 0, 'longHaps': 0, 'HLATyping': 0, 'filterReadPairsWithSmallInserts': 1, 'minBaseQual': 20, 'getVariantsFromBAMs': 1, 'genSNPs': 1, 'assemble': 0, 'assemblerKmerSize': 15, 'minVarFreq': 0.05, 'alignScoreFile': '', 'verbosity': 2, 'sourceFile': None, 'compressReads': 0, 'rmsmqThreshold': 40, 'filteredReadsFrac': 0.7, 'outputRefCalls': 0, 'badReadsThreshold': 15, 'hapScoreThreshold': 4, 'regions': ['/data/MoCha/patidarr/ref/design/Sureselect.v5.refseq.ensembl.noUTR.notfound.targetbp.hg19.bed'], 'sbThreshold': 0.001, 'output': '397859/20170910/397859~316-R~J2-PDC~WES/calls/397859~316-R~J2-PDC~WES.Platypus.raw.vcf', 'assembleBrokenPairs': 0, 'mergeClusteredVariants': 1, 'maxGenotypes': 1275, 'nInd': 1}
##reference=file:///data/MoCha/patidarr/ref/ucsc.hg19.fasta
##source=Platypus_Version_0.8.1.1
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	397859~316-R~J2-PDC~WES
chr1	752894	rs3131971	T	C	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.31;QD=24.88;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	762273	rs3115849	G	A	7867.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	762589	rs71507461	G	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.55;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762592	rs71507462	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.55;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762601	rs71507463	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.55;QD=42.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	762632	rs61768173	T	A	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	783193	rs145767270	GG	CT	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr1	792263	rs1044922	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.53;QD=26.14;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	792480	rs2905036	C	T	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	866319	rs9988021	G	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	866511	.	C	CCCCT	1763.73	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	871334	rs4072383	G	T	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	876499	rs4372192	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	877715	rs6605066	C	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	877831	rs6672356	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	879676	rs6605067	G	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	879687	rs2839	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	880238	rs3748592	A	G	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	881627	rs2272757	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	883625	rs4970378	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	884091	.	C	G	2758	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=59.9;NF=17;NR=52;PP=2758;QD=20;SC=CACCTGGCTGCACCCTGGTCA;SbPval=0.94;Source=Platypus;TC=200;TCF=74;TCR=126;TR=69;WE=884109;WS=884081;set=Platypus	GT:AD:AF:DP	0/1:131,69:0.34:200
chr1	884091	.	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	9099.73	.	AC=2;AF=1.00;AN=2;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.73;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:4,258:0.98:262
chr1	884101	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=4;HapScore=2;MGOF=4;MMLQ=26;MQ=59.89;NF=40;NR=51;PP=2962;QD=20;SC=CACCCTGGTCACCCTGGTCCT;SbPval=0.17;Source=Platypus;TC=163;TCF=58;TCR=105;TR=91;WE=884109;WS=884081;set=Platypus	GT:AD:AF:DP	1/0:72,91:0.56:163
chr1	886788	rs10465242	G	A	12451.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr1	886817	rs10465241	C	T	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	887560	rs3748595	A	C	10501.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	887801	rs3828047	A	G	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	888639	rs3748596	T	C	13745.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr1	888659	rs3748597	T	C	13604.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr1	889158	rs13303056	GA	CC	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	889638	rs13303206	G	C	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	892745	rs13303227	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	894573	rs13303010	G	A	11782.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr1	897325	rs4970441	G	C	18589.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr1	897564	rs13303229	T	C	20074.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,740:1.00:740
chr1	898323	rs6605071	T	C	10547.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	899922	.	G	GGATGT	974	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=3;HapScore=2;MGOF=27;MMLQ=28;MQ=56.36;NF=0;NR=3;PP=974;QD=336.0;SC=TCCGCAGTGGGGCTGCGGGGA;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=3;WE=899950;WS=899912;set=Platypus	GT:AD:AF:DP	1/0:14,3:0.18:17
chr1	899928	rs6677386	G	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.44;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	899932	.	A	AG	218	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=10;HapScore=2;MGOF=45;MMLQ=23;MQ=53.32;NF=0;NR=3;PP=218;QD=81.0;SC=GGCTGCGGGGAGGGGGGCGCG;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=3;WE=899950;WS=899912;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr1	899937	rs143296006	GG	TC	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.18;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	899942	rs71509448	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	899989	rs6669071	A	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	900001	rs28754834	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=76.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	900252	rs114635344	G	A	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr1	900285	rs4970435	CA	TG	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	900298	rs71628926	C	G	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:76,89:0.54:165
chr1	909073	rs3892467	C	T	2114.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:66,84:0.56:150
chr1	909238	rs3829740	G	C	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:55,72:0.57:127
chr1	909768	rs2340593	A	G	9252.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	911595	rs7417106	A	G	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	912049	rs9803103	T	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	912103	.	G	A	1618	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=4;HapScore=1;MGOF=45;MMLQ=28;MQ=56.11;NF=1;NR=55;PP=1618;QD=29.5137716526;SC=CACCAACCCCGGGAACCGCCT;SbPval=0.85;Source=Platypus;TC=58;TCF=2;TCR=56;TR=56;WE=912111;WS=912093;set=Platypus	GT:AD:AF:DP	1/1:2,56:0.97:58
chr1	912125	.	CG	C	1408	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=5;HapScore=1;MGOF=46;MMLQ=28;MQ=51.74;NF=0;NR=26;PP=1408;QD=55.1538461538;SC=CCACTCCCCCCGCCAACCCCG;SbPval=1.0;Source=Platypus;TC=31;TCF=1;TCR=30;TR=26;WE=912135;WS=912115;set=Platypus	GT:AD:AF:DP	1/1:5,26:0.84:31
chr1	912127	.	C	A	798	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=1;HapScore=1;MGOF=46;MMLQ=28;MQ=51.06;NF=0;NR=26;PP=798;QD=32.029662021;SC=ACTCCCCCCGCCAACCCCGGG;SbPval=1.0;Source=Platypus;TC=28;TCF=1;TCR=27;TR=26;WE=912135;WS=912115;set=Platypus	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	914192	rs2340595	G	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	914333	rs13302979	C	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	914852	rs13303368	G	C	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	914876	rs13302983	T	C	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	914940	rs13303033	T	C	3540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=2.108;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:175,180:0.51:355
chr1	915227	rs13303355	A	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	916549	rs6660139	A	G	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:176,126:0.42:302
chr1	916590	rs28566954	G	A	4641.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:197,221:0.53:418
chr1	917640	rs41285816	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr1	935222	rs2298214	C	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:50,54:0.52:104
chr1	948846	rs3841266	T	TA	1562.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	948870	rs4615788	C	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	948921	rs15842	T	C	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	949608	rs1921	G	A	10498.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	949654	rs8997	A	G	9229.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	949925	rs2799070	C	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	955597	rs115173026	G	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	957898	rs2799064	G	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	970549	rs70949545	TGG	T	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.65;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	976481	.	CGGAGCGGGGCG	C	1863	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5960;HP=8;HapScore=1;MGOF=23;MMLQ=23;MQ=58.68;NF=6;NR=0;PP=1863;QD=312.666666667;SC=GCCTGGGGGGCGGAGCGGGGC;SbPval=1.0;Source=Platypus;TC=11;TCF=10;TCR=1;TR=6;WE=976499;WS=976471;set=Platypus	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	976514	rs79290478	C	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.57;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	977330	rs2799066	T	C	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	977570	rs2710876	G	A	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	978603	rs35881187	CCT	C	3873.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:78,99:0.56:177
chr1	981087	rs3128098	A	G	14798.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr1	981931	rs2465128	A	G	17527.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr1	982941	rs3128102	T	C	15271.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:2,568:1.00:570
chr1	982994	rs10267	T	C	15233.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr1	984147	rs199866572	CAAAAAAAAAAA	C	810.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	984171	rs140904842	CAG	C	1121.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	984302	rs9442391	T	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	984494	rs60881902	GC	G	152.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	984495	rs368088288	C	G	126.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.45;ReadPosRankSum=-0.000;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	985266	rs2275813	C	T	9344.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	985446	rs2275812	G	T	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.53;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	985449	rs2799067	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.25;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	986443	rs2710887	C	T	13443.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr1	987200	rs9803031	C	T	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	988932	rs2710871	G	C	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	990280	rs4275402	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	990517	rs2710872	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	1007203	rs4633229	A	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.98;SOR=4.029;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	1007432	rs4333796	G	A	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	1018144	rs9442395	T	C	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	1019175	rs2298215	C	G	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	1019180	rs9442396	T	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.86;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	1021415	rs3737728	A	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	1026707	rs4074137	C	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	1026801	rs4562563	T	A	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	1103471	.	C	T	255	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=23;MQ=55.25;NF=10;NR=10;PP=255;QD=14.4885606274;SC=GGCGGAGGGCCGAGCGGGGCC;SbPval=0.24;Source=Platypus;TC=34;TCF=13;TCR=21;TR=20;WE=1103479;WS=1103461;set=Platypus	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	1158631	rs6603781	A	G	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	1196863	rs6659787	T	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	1225503	.	CCGTCCCCCGTGTCTCTGCTCCGTCCCGTGTCTCTGCTCCGTCCCGTGTCCCTGCTCCGTCCCGTGTCCCTGCT	C	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=1.438;QD=4.52;ReadPosRankSum=-3.456;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:119,24:0.17:143
chr1	1225553	.	C	T	446	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=21;MMLQ=23;MQ=52.43;NF=22;NR=11;PP=446;QD=14.5688246226;SC=GTCCCGTGTCCCTGCTCCGTC;SbPval=0.5;Source=Platypus;TC=113;TCF=77;TCR=36;TR=33;WE=1225561;WS=1225543;set=Platypus	GT:AD:AF:DP	0/1:80,33:0.29:113
chr1	1225612	rs1570866	G	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:167,75:0.31:242
chr1	1229340	.	T	TCGGGG	920.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.232;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=14.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=1.241;SOR=0.085;set=HC	GT:AD:AF:DP	0/1:57,27:0.32:84
chr1	1229680	rs2477781	G	T	12677.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	1239339	rs11260584	T	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	1242707	rs2274262	A	G	14698.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr1	1243896	.	C	T	174	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=1;HapScore=2;MGOF=81;MMLQ=23;MQ=60.0;NF=9;NR=0;PP=174;QD=23.1968013941;SC=TGGCGCGGTGCCACCGCGCAG;SbPval=1.0;Source=Platypus;TC=11;TCF=9;TCR=2;TR=9;WE=1243904;WS=1243893;set=Platypus	GT:AD:AF:DP	1/1:2,9:0.82:11
chr1	1245368	rs11590283	G	A	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	1246004	rs2296474	A	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	1247494	rs12103	T	C	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	1247578	rs70949570	T	TGGGGG	381.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=31.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr1	1249187	rs12142199	G	A	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	1254136	rs4970432	G	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	1254436	rs1886773	A	G	17713.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr1	1254443	rs1886772	G	A	17867.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr1	1254841	rs10907179	C	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	1260168	rs61766199	C	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.41;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	1262591	rs2296472	C	T	7642.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	1262966	rs307349	C	T	12793.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr1	1263144	rs307350	G	A	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	1268847	rs307378	T	G	17465.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr1	1269554	rs307377	T	C	10056.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr1	1273116	rs307371	A	G	13202.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.29;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	1273134	.	C	T	3753.77	.	AC=1;AF=0.500;AN=2;DP=352;set=Intersection	GT:AD:AF:DP	0/1:169,181:0.52:350
chr1	1273278	rs307370	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.93;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	1275264	.	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	5108.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=9.377;MLEAC=2;MLEAF=1.000;MQ=59.99;MQRankSum=0.111;QD=37.29;ReadPosRankSum=2.203;SOR=5.533;set=HC	GT:AD:AF:DP	1/1:2,135:0.99:137
chr1	1275291	.	G	A	2633	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=6;HapScore=1;MGOF=21;MMLQ=28;MQ=59.49;NF=14;NR=120;PP=2633;QD=20;SC=AGCAGCCCCCGCAGACCCACC;SbPval=0.96;Source=Platypus;TC=194;TCF=35;TCR=159;TR=134;WE=1275299;WS=1275281;set=Platypus	GT:AD:AF:DP	1/0:60,134:0.69:194
chr1	1275329	.	TA	CG	2476	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=4;HapScore=2;MGOF=30;MMLQ=23;MQ=59.19;NF=2;NR=55;PP=2476;QD=44.3766293835;SC=CAGCAGCCCCTACAGACCCAC;SbPval=1.0;Source=Platypus;TC=124;TCF=26;TCR=98;TR=57;WE=1275338;WS=1275319;set=Platypus	GT:AD:AF:DP	1/0:67,57:0.46:124
chr1	1276973	rs145370195	G	GACAC	27054.73	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr1	1277533	rs307362	T	C	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	1278237	rs307361	T	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	1284490	rs150789461	G	A	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	1288471	rs3766183	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	1288583	rs3845295	C	G	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	1288823	rs2296471	A	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	1289367	rs140777846	CTG	C	13841.73	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	1289911	rs4970365	G	A	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	1291159	rs201260508	GA	G	490.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	1293764	rs34841888	G	C	7306.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	1296691	rs2765025	C	G	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	1309982	.	AAG	A	2058.73	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,61:0.55:111
chr1	1310074	rs2765035	C	G	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.72;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	1323078	rs12729599	A	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	1323143	rs35654872	CCT	C	4041.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	1323945	.	GTCTC	G,GTC	383.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.90;QD=31.98;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:0,6,6:0.50,0.50:12
chr1	1361530	rs144957058	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.948;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=7.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.623;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:30,26:0.46:56
chr1	1362848	rs12116538	A	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-1.231;QD=1.10;ReadPosRankSum=-1.156;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr1	1386016	rs34301361	A	G	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:190,171:0.47:361
chr1	1387348	rs1781143	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr1	1387667	rs1781144	C	G	16140.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr1	1387726	rs9793066	A	G	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:326,187:0.36:513
chr1	1387764	rs9793256	G	A	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:215,115:0.35:330
chr1	1387891	rs1624483	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr1	1387920	rs1625156	G	A	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.923;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	1389695	rs35096659	C	T	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.33;MQRankSum=-1.400;QD=10.04;ReadPosRankSum=0.044;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	1390717	rs1695866	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-0.973;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	1390875	rs1781147	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr1	1390997	rs1781148	T	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr1	1391304	rs1695873	T	C	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:59,62:0.51:121
chr1	1391459	rs369694676	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=36.600;MLEAC=1;MLEAF=0.500;MQ=45.90;MQRankSum=-1.048;QD=1.44;ReadPosRankSum=-1.358;SOR=2.507;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr1	1395449	.	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.674;QD=2.81;ReadPosRankSum=-1.099;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	1417696	rs819970	C	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.99;QD=27.73;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1417782	rs819971	A	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-4.813;QD=2.12;ReadPosRankSum=-0.606;SOR=1.249;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr1	1418531	rs819973	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	1421916	rs201951488	T	C	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.302;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=54.89;MQRankSum=-8.230;QD=1.43;ReadPosRankSum=4.038;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:359,80:0.18:439
chr1	1451380	rs9439458	T	C	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:156,171:0.52:327
chr1	1454069	.	A	ACC	2061.73	.	AC=1;AF=0.500;AN=2;DP=206;set=Intersection	GT:AD:AF:DP	0/1:95,96:0.50:191
chr1	1469289	rs28370384	G	C	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr1	1469546	rs3128344	G	A	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,67:0.57:117
chr1	1551927	rs7418389	T	C	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.081;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:59,63:0.52:122
chr1	1558792	rs12755088	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr1	1560100	rs28441650	G	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.687;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr1	1563789	rs74892851	C	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:150,118:0.44:268
chr1	1564952	rs112177324	TG	T	1060.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,46:0.41:111
chr1	1566068	rs28730454	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr1	1571640	rs377058079	G	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=-0.479;QD=10.88;ReadPosRankSum=1.098;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	1574019	rs9442412	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:60,50:0.45:110
chr1	1575616	rs80012316	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	1575836	rs72468213	C	G	2565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.231;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=8.834;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-7.286;QD=7.21;ReadPosRankSum=-0.400;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:209,147:0.41:356
chr1	1580738	rs149767621	T	A	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=47.79;MQRankSum=-6.298;QD=7.65;ReadPosRankSum=1.729;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:174,129:0.43:303
chr1	1581486	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=4.823;MLEAC=1;MLEAF=0.500;MQ=51.66;MQRankSum=-1.258;QD=2.15;ReadPosRankSum=0.870;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr1	1581558	rs117719933	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=10.793;MLEAC=1;MLEAF=0.500;MQ=52.62;MQRankSum=-5.086;QD=1.59;ReadPosRankSum=-0.909;SOR=2.277;set=HC	GT:AD:AF:DP	0/1:54,10:0.16:64
chr1	1581586	rs61774914	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	1581713	rs76922129	A	C	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr1	1581759	rs61774915	G	A	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.761;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=12.236;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-12.746;QD=3.68;ReadPosRankSum=-6.005;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:293,97:0.25:390
chr1	1581926	rs61774917	G	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:97,67:0.41:164
chr1	1582106	rs79942991	T	C	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:133,187:0.58:320
chr1	1582202	rs61774918	C	T	4809.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:273,240:0.47:513
chr1	1582794	rs4648754	C	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.15;MQRankSum=-1.840;QD=11.84;ReadPosRankSum=1.076;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	1582841	rs61774920	A	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=48.89;MQRankSum=-0.736;QD=10.84;ReadPosRankSum=0.464;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	1582844	rs61774921	G	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.61;MQRankSum=-0.580;QD=10.46;ReadPosRankSum=0.320;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	1582880	rs61774922	G	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=46.02;MQRankSum=-1.734;QD=5.40;ReadPosRankSum=-0.119;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr1	1582961	rs61774949	G	C	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.404;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=9.531;MLEAC=1;MLEAF=0.500;MQ=48.11;MQRankSum=0.057;QD=3.68;ReadPosRankSum=-1.930;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:157,53:0.25:210
chr1	1583003	rs72468214	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:142,89:0.39:231
chr1	1583495	rs61774952	T	C	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.129;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=30.147;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-9.726;QD=1.37;ReadPosRankSum=-0.657;SOR=3.521;set=HC	GT:AD:AF:DP	0/1:138,22:0.14:160
chr1	1585597	rs7531938	A	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,54:0.40:134
chr1	1585642	rs3936009	G	T	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.069;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:141,96:0.41:237
chr1	1586752	rs11486023	T	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr1	1588670	rs61774958	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr1	1588717	rs61774959	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr1	1588737	rs61776760	C	T	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.798;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=54.45;MQRankSum=-2.506;QD=7.27;ReadPosRankSum=2.167;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:113,36:0.24:149
chr1	1588743	rs61776761	A	T	1062.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=6.004;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=-2.171;QD=6.44;ReadPosRankSum=2.791;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:130,35:0.21:165
chr1	1588744	rs79724854	AGCG	A	1047.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=6.160;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-2.215;QD=6.24;ReadPosRankSum=3.025;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:134,34:0.20:168
chr1	1599812	rs12729295	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.809;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=18.094;MLEAC=1;MLEAF=0.500;MQ=48.02;MQRankSum=-4.915;QD=0.94;ReadPosRankSum=1.511;SOR=3.340;set=HC	GT:AD:AF:DP	0/1:94,14:0.13:108
chr1	1599888	rs2072923	A	G	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.914;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=5.723;MLEAC=1;MLEAF=0.500;MQ=53.21;MQRankSum=2.702;QD=2.47;ReadPosRankSum=-2.190;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:187,50:0.21:237
chr1	1635004	rs874516	T	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	1635619	rs2076329	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.70;QD=25.00;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	1635749	rs55880629	C	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	1636044	rs1059822	G	A	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	1636274	rs2179381	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	1639046	rs138369165	C	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.35;QD=31.21;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	1639062	rs149613000	T	C	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	1639801	rs74378830	T	C	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.35;QD=23.80;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	1644718	.	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.55;MQRankSum=1.021;QD=3.24;ReadPosRankSum=1.022;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr1	1644908	rs2179383	C	T	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.63;QD=28.41;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1645050	rs77869096	C	T	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.23;QD=26.48;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	1645838	rs33938712	CA	C	1065.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=35.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1646113	rs199941510	G	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	1646231	rs200994957	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	1646236	rs202149796	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	1646789	rs760927	T	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.14;QD=23.55;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1647722	rs114460890	G	T	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.22;ReadPosRankSum=0.156;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:49,40:0.45:89
chr1	1647725	rs368680882	GT	AG	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.529;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.212;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=-0.429;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:51,47:0.48:98
chr1	1647729	.	CA	TG	2514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.812;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=4.464;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.45;ReadPosRankSum=0.382;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:59,53:0.47:112
chr1	1647745	rs72634830	G	A	3170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.46;ReadPosRankSum=-0.018;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:75,80:0.52:155
chr1	1647753	rs74045984	C	T	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.034;QD=19.78;ReadPosRankSum=1.137;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:92,88:0.49:180
chr1	1647778	rs72901773	C	G	4483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.986;QD=16.13;ReadPosRankSum=0.524;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:136,142:0.51:278
chr1	1647814	rs72901775	T	C	4426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.076;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.971;QD=10.85;ReadPosRankSum=0.142;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:197,211:0.52:408
chr1	1647871	rs72909014	T	C	5069.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:275,252:0.48:527
chr1	1647893	rs144636354	C	CTTTCTT	6545.73	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:223,174:0.44:397
chr1	1647968	rs146207119	C	CAT	1868.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:120,53:0.31:173
chr1	1647971	rs77394327	G	A	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.905;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=12.225;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-4.695;QD=9.89;ReadPosRankSum=0.206;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:119,45:0.27:164
chr1	1647983	rs74429813	T	A	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=10.434;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-4.800;QD=10.84;ReadPosRankSum=-0.273;SOR=1.690;set=HC	GT:AD:AF:DP	0/1:89,37:0.29:126
chr1	1647990	rs76519969	C	T	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.433;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=6.144;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-4.883;QD=9.63;ReadPosRankSum=0.085;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr1	1648002	rs77107184	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr1	1648018	rs79409185	C	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.088;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-5.082;QD=8.94;ReadPosRankSum=1.345;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr1	1648027	rs61776857	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	1650657	.	C	G	551	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=2;HapScore=2;MGOF=27;MMLQ=27;MQ=59.76;NF=25;NR=6;PP=551;QD=18.895845566;SC=CTTTCAGCTACAGTTTGCTTT;SbPval=0.3;Source=Platypus;TC=62;TCF=53;TCR=9;TR=31;WE=1650665;WS=1650655;set=Platypus	GT:AD:AF:DP	0/1:31,31:0.50:62
chr1	1650787	rs1137003	T	C	6931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=-0.842;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:190,182:0.49:372
chr1	1650797	rs1059830	A	G	7371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=0.057;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:202,183:0.48:385
chr1	1650801	rs1137004	T	C	7187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=0.083;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:208,191:0.48:399
chr1	1650807	rs1137005	T	C	4642.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:190,214:0.53:404
chr1	1650832	rs72909030	A	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:249,211:0.46:460
chr1	1650845	rs1059831	G	A	5361.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:217,254:0.54:471
chr1	1650920	rs36191908	G	A	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.187;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.359;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:367,94:0.20:461
chr1	1650938	.	CGG	C	6133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.408;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.814;QD=14.92;ReadPosRankSum=1.014;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:246,165:0.40:411
chr1	1650942	.	A	AAG	6084.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.803;QD=15.02;ReadPosRankSum=1.716;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:245,160:0.40:405
chr1	1650960	rs72634834	G	A	5077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=4.352;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-0.820;QD=15.48;ReadPosRankSum=-0.592;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:195,133:0.41:328
chr1	1650967	rs75384210	T	C	4462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=6.458;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.798;QD=15.39;ReadPosRankSum=-0.187;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:176,114:0.39:290
chr1	1650996	rs74223875	T	C	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.794;QD=13.49;ReadPosRankSum=-1.564;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:108,70:0.39:178
chr1	1651003	rs76941027	G	A	2187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.988;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.787;QD=14.49;ReadPosRankSum=-1.904;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:92,59:0.39:151
chr1	1651047	.	C	T	1877	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=4;MGOF=61;MMLQ=26;MQ=58.75;NF=5;NR=37;PP=1877;QD=45.5183622035;SC=TCTCCAACTTCAGGCATCTTT;SbPval=0.78;Source=Platypus;TC=94;TCF=15;TCR=79;TR=42;WE=1651089;WS=1651037;set=Platypus	GT:AD:AF:DP	0/1:52,42:0.45:94
chr1	1651057	.	T	TTTTTTC	297	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=18;HapScore=4;MGOF=61;MMLQ=17;MQ=58.39;NF=1;NR=18;PP=297;QD=15.7894736842;SC=CAGGCATCTTTTTTTTTTTTT;SbPval=0.43;Source=Platypus;TC=67;TCF=2;TCR=65;TR=19;WE=1651089;WS=1651037;set=Platypus	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	1651077	rs70937183	CGG	CTCGCTCTGTCACCCAGGCTGG,C	546.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	1/1:1.00:13
chr1	1653004	rs36039898	T	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	1653028	rs16825265	C	T	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	1654038	rs61777494	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	1654058	rs61777495	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.68;QD=48.16;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	1654064	rs200615789	A	T	2671.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.09;QD=44.53;SOR=2.381;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	1654065	rs35174499	AGCG	A	2662.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	1657021	rs9439499	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.15;QD=26.51;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	1663696	.	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=1.512;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	1663831	rs3817856	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,58:0.49:119
chr1	1663851	rs2294486	G	C	2476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=0.474;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:62,67:0.52:129
chr1	1663861	rs2294487	G	A	2448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.419;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.13;ReadPosRankSum=1.241;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:63,65:0.51:128
chr1	1664019	rs2294488	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	1666175	rs61777509	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=43.79;MQRankSum=3.951;QD=7.61;ReadPosRankSum=-0.415;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	1666251	rs77655487	G	A	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.874;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.085;MLEAC=1;MLEAF=0.500;MQ=46.95;MQRankSum=-3.668;QD=15.05;ReadPosRankSum=-1.608;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chr1	1666338	rs2072924	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.70;QD=27.85;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	1669646	rs201497363	ACT	A	705.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	1669734	rs80140081	G	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr1	1669748	rs115554296	A	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chr1	1669964	rs369037660	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.92;MQRankSum=0.615;QD=9.67;ReadPosRankSum=0.026;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	1670570	rs150051592	T	C	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.51;QD=28.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	1684347	rs150880809	C	CCCT	5855.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:30,243:0.89:273
chr1	1684472	rs7407	C	T	7799.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	1685213	rs2072928	C	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	1685921	rs139385870	TCCCTGGGACCGAAGTCGCCCCA	T	6028.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	1686943	rs2072929	T	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr1	1686962	rs2076327	C	T	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr1	1688192	rs2281173	A	G	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	1688384	rs79052177	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,44:0.53:83
chr1	1688469	rs4648623	C	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	1690126	rs79655042	A	AAC	1798.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	1690793	rs2235538	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	1696659	rs5021859	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	1823922	rs6688000	A	G	14718.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr1	1846582	rs2748987	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	1846765	rs2247560	G	A	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	1847856	rs2748986	G	T	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	1848109	rs2803296	G	C	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	1849529	rs28640257	A	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr1	1850428	rs2295363	A	G	3495.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.79;ReadPosRankSum=-0.376;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:2,139:0.99:141
chr1	1850627	.	CAGCGGCAGG	C	1190.73	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	1853615	rs113294876	T	TCTGA	1357.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	1854109	rs2803348	A	G	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	1854321	rs2250833	A	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	1855450	rs28423370	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	1858309	rs941530	T	C	10883.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr1	1859296	rs2748984	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	1860087	rs2748983	C	T	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	1861582	rs2803295	C	T	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr1	1870210	rs2803323	G	A	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	1871979	rs2748982	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	1873453	rs2748981	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	1873514	rs2803326	A	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	1873525	rs2803327	T	C	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	1873697	rs2748980	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	1873697	.	GAG	AAC	1553	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=5;HapScore=1;MGOF=1;MMLQ=26;MQ=60.0;NF=10;NR=26;PP=1553;QD=44.6241076351;SC=CCAAGCCCCCGAGAGGTGCTC;SbPval=0.49;Source=Platypus;TC=38;TCF=10;TCR=28;TR=36;WE=1873707;WS=1873687;set=Platypus	GT:AD:AF:DP	1/1:2,36:0.95:38
chr1	1873699	rs2748979	G	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.90;SOR=2.356;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	1875858	rs2803336	CA	GG	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	1878628	rs2803341	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	1886483	.	C	A	89	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=3;HapScore=2;MGOF=35;MMLQ=27;MQ=57.47;NF=7;NR=1;PP=89;QD=15.4714015684;SC=ACCGGAAGTGCGGCTCACACC;SbPval=0.76;Source=Platypus;TC=18;TCF=15;TCR=3;TR=8;WE=1886491;WS=1886473;set=Platypus	GT:AD:AF:DP	1/0:10,8:0.44:18
chr1	1886501	.	C	A	342	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=3;HapScore=2;MGOF=28;MMLQ=28;MQ=57.92;NF=14;NR=5;PP=342;QD=19.8300638183;SC=ACCGGAAGTGCGGCTCACACC;SbPval=0.49;Source=Platypus;TC=21;TCF=16;TCR=5;TR=19;WE=1886509;WS=1886491;set=Platypus	GT:AD:AF:DP	1/1:2,19:0.90:21
chr1	1886517	.	T	TGAG	868.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	1886519	.	C	A	612	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=3;HapScore=1;MGOF=17;MMLQ=27;MQ=58.57;NF=20;NR=9;PP=612;QD=22.3024556051;SC=ACCGGAAGTGCGGCTCACACA;SbPval=0.52;Source=Platypus;TC=30;TCF=21;TCR=9;TR=29;WE=1886527;WS=1886509;set=Platypus	GT:AD:AF:DP	1/1:1,29:0.97:30
chr1	1886519	.	C	CTCACACCGGAAGTGA,CTCACACCGGAAGTGAGGCTCACACCGGAAGTGA	1103.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=68.98;SOR=2.584;set=HC	GT:AD:AF:DP	1/2:0,7,9:0.44,0.56:16
chr1	1887019	rs28548017	A	G	10740.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr1	1891263	rs2474454	A	T	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:94,100:0.52:194
chr1	1900186	rs35269416	T	C	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=1.888;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:62,75:0.55:137
chr1	1900232	rs16824588	T	C	1675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-2.503;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:79,85:0.52:164
chr1	1903357	rs13303329	G	C	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr1	1905526	rs200214481	C	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:83,48:0.37:131
chr1	1905790	rs16824603	A	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	1918488	rs4350140	A	G	2880.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:190,143:0.43:333
chr1	1922303	rs13303195	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr1	1956362	rs2376805	G	A	13881.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:1,526:1.00:527
chr1	1957037	rs2229110	T	C	7826.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:320,370:0.54:690
chr1	1960674	rs28408173	C	T	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:180,184:0.51:364
chr1	1960926	rs28581504	T	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	1961408	rs28431879	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:113,83:0.42:196
chr1	1987803	rs2803309	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	1987993	rs12184	T	C	2400.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:103,119:0.54:222
chr1	1991014	rs1878745	A	G	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:133,134:0.50:267
chr1	1991123	rs1878746	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:81,86:0.51:167
chr1	1991173	rs2247923	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr1	2005740	rs2459986	T	C	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-1.868;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:43,52:0.55:95
chr1	2005805	rs28694018	C	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=1.382;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr1	2075560	rs427811	T	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	2075570	rs377283	T	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.38;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	2077409	rs385039	A	G	7815.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	2082458	rs262670	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	2082489	rs262669	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	2103477	rs371280307	G	A	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:267,191:0.42:458
chr1	2106840	rs12135175	T	C	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	2106896	rs12135178	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	2113266	rs262689	G	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr1	2113565	rs262688	T	G	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	2114271	rs74912021	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr1	2118539	rs2503699	T	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	2121118	rs2503701	C	T	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	2125942	rs71511332	C	G	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	2126139	rs6662296	C	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	2132394	rs147332899	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr1	2144982	rs2480714	G	T	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	2234903	rs2256178	C	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,67:0.47:144
chr1	2235662	rs2645073	G	A	2686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=0.618;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:81,71:0.47:152
chr1	2235672	rs2843159	C	T	2614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=1.055;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:91,74:0.45:165
chr1	2286947	rs1039100	A	G	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr1	2322726	rs71630976	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr1	2328714	rs2645081	A	G	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	2332391	rs12037485	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:98,77:0.44:175
chr1	2337032	rs1129171	C	T	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr1	2338126	rs3795269	C	A	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:142,114:0.45:256
chr1	2340200	rs2494598	T	C	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	2399119	rs2494632	A	G	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-1.557;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:48,42:0.47:90
chr1	2399149	rs2494631	A	G	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-0.680;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr1	2409892	rs12727342	A	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr1	2411451	rs10797428	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:100,68:0.40:168
chr1	2418625	rs7512269	C	T	3575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.186;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:159,179:0.53:338
chr1	2418935	rs10910082	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	2420590	rs10752744	T	C	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	2420913	rs6668720	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr1	2422614	rs2477699	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	2426766	rs3001347	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	2428874	rs2477706	T	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.51;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	2430617	rs2296442	C	T	9015.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	2433900	rs12736998	C	T	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	2444414	rs7535528	G	A	5943.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:254,291:0.53:545
chr1	2452569	rs2985862	T	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	2460944	.	C	CGCG	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.27;ReadPosRankSum=0.825;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	2518186	rs10752746	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	2527678	rs2260976	A	G	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	2528133	rs2843401	T	C	12013.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr1	2530259	rs368959152	GGA	G	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.338;QD=1.48;ReadPosRankSum=-0.416;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr1	2530341	rs34705971	A	AG	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	2535496	rs35642779	C	A	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr1	2560735	rs4648657	A	G	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.45;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	2560818	.	CCAG	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.500;QD=0.20;ReadPosRankSum=0.131;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:243,20:0.08:263
chr1	2560882	rs4648658	G	A	10245.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	2560903	rs4648659	T	G	9536.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.77;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	2573199	rs4648662	A	G	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	2700117	rs4648502	C	G	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	2938989	rs3795263	G	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:113,108:0.49:221
chr1	2983963	rs2297828	G	A	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:123,144:0.54:267
chr1	2984087	rs2297829	C	A	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:127,150:0.54:277
chr1	2985885	rs7413494	C	G	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=1.309;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr1	3301721	rs2282198	C	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:74,64:0.46:138
chr1	3310928	rs145881072	C	CCG	361.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	3311212	rs2493253	C	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr1	3311261	rs6702992	C	T	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr1	3312914	rs871822	T	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:102,122:0.54:224
chr1	3328358	rs870124	T	C	13271.77	.	AC=1;AF=0.500;AN=2;DB;DP=1237;set=Intersection	GT:AD:AF:DP	0/1:594,634:0.52:1228
chr1	3342804	rs870171	G	T	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.645;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:108,109:0.50:217
chr1	3350134	rs10752734	T	C	2956.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:8,106:0.93:114
chr1	3379769	.	TCC	T	5835.73	.	AC=1;AF=0.500;AN=2;DP=353;set=Intersection	GT:AD:AF:DP	0/1:189,156:0.45:345
chr1	3383593	rs3893316	G	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	3383665	rs7550948	G	A	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	3383898	rs6424078	A	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	3385250	rs1417897	C	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr1	3385256	rs1891143	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr1	3385330	rs2493249	T	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	3389727	rs2185639	C	T	13813.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:2,528:1.00:530
chr1	3390238	rs2493323	T	A	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	3392523	rs199967083	A	G	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.413;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:78,89:0.53:167
chr1	3394456	rs4638054	T	C	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	3394640	rs4422946	A	G	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	3394674	rs4534324	T	C	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	3395039	rs10797395	G	A	9774.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	3395229	rs4553117	T	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	3395973	rs70938094	ACC	A	8415.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	3396278	rs200308477	T	TGCCCCG	1886.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr1	3396609	rs881978	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	3397188	rs2487677	T	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	3407007	rs2821039	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:83,62:0.43:145
chr1	3407112	rs57484147	C	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:74,81:0.52:155
chr1	3410223	rs74050550	A	G	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,66:0.55:119
chr1	3410644	rs61742508	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr1	3411038	rs61730954	G	A	1742.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:108,88:0.45:196
chr1	3411367	rs7516439	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	3412465	rs57804877	C	T	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:79,79:0.50:158
chr1	3413504	rs112892496	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr1	3414105	rs10909951	C	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:79,83:0.51:162
chr1	3416449	rs7553399	C	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:143,86:0.38:229
chr1	3417131	rs2821031	A	G	2529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.354;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:116,128:0.52:244
chr1	3417960	rs4648507	G	A	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:121,136:0.53:257
chr1	3418391	rs4648508	C	T	5896.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:262,289:0.52:551
chr1	3418565	.	T	C	2638	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=3;HapScore=1;MGOF=22;MMLQ=23;MQ=53.61;NF=42;NR=98;PP=2638;QD=20;SC=GGGCTCCTGGTGAGTGTGCCC;SbPval=0.52;Source=Platypus;TC=143;TCF=43;TCR=100;TR=140;WE=3418588;WS=3418555;set=Platypus	GT:AD:AF:DP	1/1:3,140:0.98:143
chr1	3418613	.	CCG	C	1564	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=6;HapScore=1;MGOF=40;MMLQ=26;MQ=44.78;NF=1;NR=35;PP=1564;QD=44.0277777778;SC=GTGTGCCCCCCCGGCGCCTCC;SbPval=0.83;Source=Platypus;TC=40;TCF=2;TCR=38;TR=36;WE=3418626;WS=3418602;set=Platypus	GT:AD:AF:DP	1/0:4,36:0.90:40
chr1	3418616	.	GCG	ACA	1531	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=26;MQ=45.86;NF=5;NR=28;PP=1531;QD=48.0141780261;SC=TGCCCCCCCGGCGCCTCCTCA;SbPval=0.9;Source=Platypus;TC=49;TCF=12;TCR=37;TR=33;WE=3418626;WS=3418602;set=Platypus	GT:AD:AF:DP	1/0:16,33:0.67:49
chr1	3421625	rs148387225	ACACCGGTAGCAAGGCAC	A	738.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr1	3421658	rs2821009	A	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	3421897	rs2821008	A	G	8975.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr1	3422144	rs2105305	G	C	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-0.110;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:51,26:0.34:77
chr1	3422597	rs72852490	C	G	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=1.743;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:94,74:0.44:168
chr1	3422642	rs2247236	A	G	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=1.317;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:85,105:0.55:190
chr1	3422730	.	G	A	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-1.397;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:39,85:0.69:124
chr1	3424508	rs41315296	G	A	2075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.216;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:128,104:0.45:232
chr1	3425183	rs61735125	G	A	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:115,138:0.55:253
chr1	3425867	rs2794359	C	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	3426594	rs2821005	A	G	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=0.512;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:89,77:0.46:166
chr1	3426717	rs2821003	A	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr1	3428160	rs2820999	T	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,100:0.50:199
chr1	3428424	rs4648391	G	T	2152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=0.237;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:62,58:0.48:120
chr1	3428428	rs4648514	C	T	2167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=0.249;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:58,56:0.49:114
chr1	3431235	rs7543634	A	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr1	3440647	rs2794322	T	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	3440943	rs12049449	A	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	3477414	rs138354618	GGGCT	G	452.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr1	3496328	rs2821051	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	3496479	rs2794340	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	3518944	rs7521546	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	3527944	rs10797402	C	G	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	3528082	rs10797403	T	C	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=1.517;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	3548136	rs2760321	T	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr1	3563428	rs76161888	C	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr1	3563512	rs34514629	GC	G	1199.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	3566625	rs145464993	AGCAGGCTG	A	832.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	3566706	rs2251098	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	3607520	rs3765730	G	A	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:161,127:0.44:288
chr1	3638674	rs1801174	C	T	24084.77	.	AC=2;AF=1.00;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	1/1:0,918:1.00:918
chr1	3640085	rs6424091	C	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=29.07;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	3640134	rs35939665	TCTGC	T	403.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	3644085	rs10910017	G	A	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr1	3644349	rs2181486	A	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	3644374	rs2146657	A	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	3644669	rs2236367	C	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr1	3644805	rs2236366	A	G	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:118,118:0.50:236
chr1	3644858	rs2236365	G	C	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:68,71:0.51:139
chr1	3645835	rs2254530	C	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.344;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	3645844	rs2096224	G	A	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=-0.305;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr1	3646137	rs11589885	C	T	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:171,156:0.48:327
chr1	3646192	rs1885867	G	A	12744.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	3646214	rs1885866	T	C	12173.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	3646291	rs1885865	G	A	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	3647962	rs1745813	T	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,38:0.52:73
chr1	3662845	rs3737589	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	3669172	rs41315312	C	T	5419.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:306,268:0.47:574
chr1	3669201	rs10797410	A	G	7245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=-0.524;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:264,196:0.43:460
chr1	3669205	rs10910021	C	G	7285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.84;ReadPosRankSum=0.027;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:265,195:0.42:460
chr1	3677933	rs1181883	T	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=0.891;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:63,48:0.43:111
chr1	3679139	rs1181879	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=-0.576;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr1	3680056	rs56079032	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	3683690	rs1181873	A	C	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr1	3686415	rs41315316	C	T	1706.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:109,94:0.46:203
chr1	3688030	rs3737592	C	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,52:0.45:115
chr1	3698017	rs12745312	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	3698224	rs17411384	G	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr1	3701491	rs2996426	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.631;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	3701580	rs57217928	G	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr1	3701663	rs2298227	T	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr1	3701832	rs71634371	C	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr1	3703337	rs2368537	G	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	3731959	rs12729542	C	T	5955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=-0.055;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:146,155:0.51:301
chr1	3731965	rs12728401	G	A	6094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=1.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.41;ReadPosRankSum=-0.456;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:153,161:0.51:314
chr1	3732103	rs4648409	T	C	2791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.661;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=2.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=1.193;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:117,141:0.55:258
chr1	3732172	rs4233019	C	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr1	3732639	rs6702916	T	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	3732707	rs6702935	T	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	3732782	rs6703035	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr1	3742257	rs12759497	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	3743109	rs2275834	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr1	3743132	rs4648344	T	C	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:118,114:0.49:232
chr1	3743151	rs4648345	G	A	5599.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:164,169:0.51:333
chr1	3743319	rs6663840	G	A	4841.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:254,230:0.48:484
chr1	3743433	rs5772126	T	TG	3334.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	3745787	rs2275832	T	C	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.799;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:95,85:0.47:180
chr1	3746583	rs2275828	G	T	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-3.218;SOR=1.327;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr1	3746589	rs2275826	C	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.52;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	3746710	rs17403773	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	3747580	rs6424058	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	3747603	rs6413779	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	3751728	rs34966926	G	GT	74.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	3753013	rs12746541	G	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.63;ReadPosRankSum=-1.070;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	3753136	rs2275824	A	T	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:131,117:0.47:248
chr1	3755675	rs1891941	T	C	21649.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,810:1.00:810
chr1	3756120	rs1539649	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr1	3759784	rs10797347	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	3761479	rs2275822	C	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr1	3761650	rs2275821	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	3765095	.	C	CAAAAA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.158;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	3765424	rs10492943	G	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr1	3769033	rs3819006	AA	TT	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;JOINED;set=Intersection	GT:AD:AF:DP	0/1:111,114:0.51:225
chr1	3774130	rs34891610	A	G	2595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.19;ReadPosRankSum=-0.607;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:84,67:0.44:151
chr1	3774138	rs12723005	T	C	2719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-1.402;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:90,77:0.46:167
chr1	3774296	rs12722891	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr1	3774312	rs12726906	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	3775454	rs4376673	C	G	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	3776989	rs12129902	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr1	3782608	rs10909809	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	3786189	rs1141070	G	A	3058.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr1	3788968	rs111645751	G	A	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	3789178	.	G	GGGCCCTGTCCCTGCCGC	2900	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=10;MMLQ=23;MQ=67.18;NF=6;NR=53;PP=2900;QD=20;SC=AGTGCCTGCAGGGCCCTGTCC;SbPval=0.45;Source=Platypus;TC=77;TCF=7;TCR=70;TR=59;WE=3789186;WS=3789168;set=Platypus	GT:AD:AF:DP	1/1:18,59:0.77:77
chr1	3789194	.	G	GCGGCCC	6212.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.14;QD=40.61;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	3789195	.	T	C	1536	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=72;MMLQ=23;MQ=66.79;NF=28;NR=54;PP=1536;QD=19.1557464945;SC=GTCCCTGCCGTGGCCCTGTCC;SbPval=0.51;Source=Platypus;TC=83;TCF=28;TCR=55;TR=82;WE=3789203;WS=3789185;set=Platypus	GT:AD:AF:DP	1/1:1,82:0.99:83
chr1	3789195	.	T	TGTCCCTGCCGC	6292.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.09;QD=44.63;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	3800242	rs3205087	A	G	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:246,185:0.43:431
chr1	3807593	rs4274008	G	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	3816897	.	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.31;ReadPosRankSum=-0.074;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	4772053	rs1061968	T	C	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:175,194:0.53:369
chr1	4772717	rs242056	G	A	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	4834606	rs389959	T	C	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	4847845	rs4654460	G	A	9515.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:2,349:0.99:351
chr1	5623965	rs9439613	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	5922834	rs12133533	C	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	5925040	rs11121682	G	A	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	5925371	rs1287634	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	5926507	rs555164	T	C	8218.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	5927031	rs12122135	A	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	5927738	rs2297791	G	A	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	5934490	rs868163	A	G	9896.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.97;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	5934490	.	ATCAGCCAAAT	GTCAGCCAAAC,GTCAGCCAAAT	1784	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=72,149;NR=55,116;PP=1466,1784;QD=11.9643139753;SC=TCCCACCGTCATCAGCCAAAT;SbPval=0.57;Source=Platypus;TC=265;TCF=149;TCR=116;TR=127,265;WE=5934508;WS=5934480;set=Platypus	GT:AF:DP	0/1:0.48:265
chr1	5934500	rs905467	T	C	2849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=1.768;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:154,143:0.48:297
chr1	5934837	rs1287638	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	5935162	rs1287637	A	T	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	5935222	rs963030	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr1	5937327	rs3747990	C	T	6934.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	5937391	rs3747989	C	T	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	5939544	rs11121915	T	G	8033.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:2,308:0.99:310
chr1	5947308	rs41280814	G	A	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr1	5948677	rs2282281	G	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	5964991	rs3737234	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	5965381	rs12120967	C	T	7455.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	5987696	rs7520105	T	C	6300.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	6038583	rs4908639	G	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	6111757	rs11589347	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	6145365	rs2294936	A	G	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	6150637	rs12081978	C	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	6155332	rs1555144	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	6156306	rs116536189	G	A	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	6157282	rs749434	C	T	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	6157434	rs2311802	C	T	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	6158562	rs2229002	A	G	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	6162054	rs6696489	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	6184092	rs2843493	A	G	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:84,138:0.62:222
chr1	6184192	rs2273041	A	G	2811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-1.691;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:91,131:0.59:222
chr1	6184286	rs2273040	A	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr1	6185064	rs55930553	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr1	6185532	rs2273037	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,72:0.46:157
chr1	6186961	rs2746060	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	6188044	rs3215558	TG	T	451.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	6188377	rs72632513	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr1	6188546	rs2273034	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr1	6188779	rs2273033	G	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr1	6204222	rs17489787	C	G	2396.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:159,120:0.43:279
chr1	6204266	rs9435102	A	G	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,89:0.49:180
chr1	6209363	rs12565328	T	C	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,112:0.55:204
chr1	6210970	rs12564469	G	A	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr1	6211183	rs9434711	G	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr1	6212408	rs746122	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr1	6215736	rs12074369	C	G	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:143,165:0.54:308
chr1	6239937	rs70981314	C	CG	6921.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	6257826	rs2294714	T	C	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.219;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:45,61:0.58:106
chr1	6257856	rs2294713	G	A	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	6272134	rs201365005	C	CG	1681.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:178,100:0.36:278
chr1	6272137	rs709208	A	G	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:160,126:0.44:286
chr1	6278414	rs709209	A	G	3707.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:176,181:0.51:357
chr1	6279370	rs846111	G	C	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	6305292	rs61760836	C	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr1	6305303	rs61760837	C	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,48:0.44:110
chr1	6309319	rs1883608	C	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-1.373;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	6313938	rs12735670	C	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:68,55:0.45:123
chr1	6314349	rs6696630	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr1	6314479	rs12740426	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr1	6314822	rs11590458	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:97,98:0.50:195
chr1	6342795	rs41278926	C	T	1413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=1.247;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:55,70:0.56:125
chr1	6453520	rs76483502	C	CG	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	6500626	.	C	CG	295	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=8;HapScore=2;MGOF=35;MMLQ=23;MQ=54.09;NF=1;NR=3;PP=295;QD=80.0;SC=GTACAGGGGGCGGGCCTACAG;SbPval=0.58;Source=Platypus;TC=5;TCF=1;TCR=4;TR=4;WE=6500634;WS=6500616;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr1	6525920	rs11574660	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	6529182	rs113541584	TTCC	T	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=4.122;QD=1.27;ReadPosRankSum=1.339;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:151,18:0.11:169
chr1	6530965	rs111312565	C	CG	3440.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	6534643	rs141032388	C	T	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:169,153:0.48:322
chr1	6579607	rs1556035	C	T	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	6585804	rs13513	C	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	6586070	rs7548042	C	T	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	6591937	rs932112	T	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	6601773	rs3761927	T	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	6609559	rs11122091	C	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	6609851	rs10864622	A	G	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	6609896	rs11579888	G	A	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	6610366	rs2063805	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	6610382	rs2063806	C	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	6614391	rs6693391	A	C	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	6614415	rs6693400	A	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	6614535	rs4908923	G	A	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	6614653	rs4908924	C	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	6615690	rs925745	A	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	6615695	rs925744	C	T	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	6635231	rs10864628	A	G	9089.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	6636461	rs17492553	C	T	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:84,92:0.52:176
chr1	6645867	rs6682920	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr1	6646959	rs3833475	GCCTGCCTTC	G	12629.73	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	6659505	rs2232460	G	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:122,107:0.47:229
chr1	6662913	rs6674407	G	A	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.083;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	6677064	rs10779795	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	6679848	rs2072948	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr1	6681375	rs6695474	C	T	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,60:0.56:108
chr1	6681744	rs3747994	C	T	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	6685442	rs12746591	A	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	6690140	rs742394	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	6692273	rs34491693	C	CA	242.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.039;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.723;SOR=0.160;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr1	6693097	rs3174820	A	G	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr1	6694207	rs12727844	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr1	6694574	rs6804	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr1	6695802	rs6577583	A	G	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	6704635	rs200458	A	G	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	6711146	rs12145525	T	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:98,86:0.47:184
chr1	6713114	rs2235564	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr1	6761702	rs3761925	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:84,98:0.54:182
chr1	6845564	rs192783463	G	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-0.426;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr1	6866978	rs660880	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr1	7166332	rs72857584	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.263;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr1	7202190	rs970973	T	C	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	7289777	rs4243824	G	A	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=1.208;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:33,44:0.57:77
chr1	7527996	rs1201529	T	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	7624855	rs17031140	G	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.712;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	7737799	rs3011926	A	G	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	7807897	rs12133253	A	G	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:129,122:0.49:251
chr1	7807966	rs34083763	GT	G	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.936;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:54,23:0.30:77
chr1	7809728	.	CT	C,CTT	1026.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.464;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.590;QD=11.67;ReadPosRankSum=0.746;SOR=1.121;set=HC	GT:AD:AF:DP	1/2:11,45,32:0.51,0.36:88
chr1	7811014	rs1573753	G	A	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=-0.252;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:30,31:0.51:61
chr1	7811215	rs10779689	A	G	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:95,99:0.51:194
chr1	7812398	rs9919223	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr1	7833485	rs11576572	G	A	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr1	7845695	rs228729	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	7847362	rs35115980	C	CT	114.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	7854209	rs11807683	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	7861153	rs34433622	C	CT	1313.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	7861345	rs488728	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	7863293	rs228642	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	7869915	rs228668	G	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	7870048	rs228669	T	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	7870144	rs228670	A	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	7880469	rs228691	A	G	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	7880683	rs10462020	T	G	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	7887493	rs228696	T	C	18570.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr1	7889804	rs228701	C	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	7889972	.	GAGAATCCATCCCATCCTACTGCCAGCGCTCTGTCCACAGGATCGCCTCCCATGA	G	9269.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;MQRankSum=-0.520;QD=27.59;ReadPosRankSum=-1.230;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:2,334:0.99:336
chr1	7890053	.	GCT	ACA	2944	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=27;MQ=56.53;NF=66;NR=84;PP=2944;QD=20;SC=TACTGCCAGCGCTCTGTCCAC;SbPval=0.72;Source=Platypus;TCR=235;TR=150;WE=7890063;WS=7890043;set=Platypus	GT:AD:AF:DP	1/0:307,150:0.33:457
chr1	7890117	rs2640909	T	C	23026.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:0,878:1.00:878
chr1	7890264	rs1773135	A	G	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	7897133	rs10462021	A	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	7906364	rs139237447	A	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr1	7906476	rs172932	G	T	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	7906859	rs141522407	T	TAAGA	11360.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	7911099	rs228651	C	T	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	7913184	rs34962249	CA	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.187;QD=4.81;ReadPosRankSum=0.561;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	7913430	rs228648	G	A	2897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.044;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:114,141:0.55:255
chr1	7998963	rs226476	T	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	8384268	rs6702047	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	8390495	rs1058619	A	G	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	8395441	rs2305016	T	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:106,89:0.46:195
chr1	8397803	rs7520373	C	T	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr1	8404093	rs1055236	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,52:0.43:120
chr1	8418644	rs11121172	C	A	3372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=5.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=1.058;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:174,94:0.35:268
chr1	8418650	rs1058766	T	C	3449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=0.593;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:182,98:0.35:280
chr1	8421092	rs2784735	C	T	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=2.248;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:46,43:0.48:89
chr1	8421203	rs13596	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr1	8422676	rs2252865	T	C	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr1	8526142	rs4908760	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	8557320	rs7518608	C	G	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	8557691	rs7530745	A	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	8926285	rs3831913	A	AG	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr1	8926329	rs2781066	C	T	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr1	8926752	rs2781065	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	8928125	rs2071412	G	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.041;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chr1	8930369	rs2781060	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	8930385	rs2765511	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	8935149	rs2038904	A	G	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	9006101	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.23;ReadPosRankSum=-0.784;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	9011586	rs3765968	T	G	3085.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:153,152:0.50:305
chr1	9011722	rs3765966	G	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,42:0.47:89
chr1	9017091	rs2274332	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	9017204	rs2274333	A	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:154,183:0.54:337
chr1	9034421	rs3765964	G	A	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	9034598	rs3765963	A	G	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	9034815	rs35753212	C	CAGA	6261.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	9063602	rs4908804	G	C	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,53:0.44:120
chr1	9063646	rs4908805	T	C	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr1	9084924	rs2027222	T	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	9085006	rs148146441	G	GGCCCACCTTGT	3072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=3.284;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:177,145:0.45:322
chr1	9098742	rs11121306	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr1	9099912	rs139477702	G	A	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:110,154:0.58:264
chr1	9107849	rs3737661	G	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr1	9117532	.	C	T	1868.77	.	AC=1;AF=0.500;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	0/1:91,90:0.50:181
chr1	9165868	rs1705303	A	G	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	9323910	rs6688832	G	A	6289.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:256,295:0.54:551
chr1	9324571	rs9434742	T	C	4692.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:283,234:0.45:517
chr1	9324670	rs9434743	A	G	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:314,224:0.42:538
chr1	9325001	rs41280760	C	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	9416073	rs140636579	G	A	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:142,156:0.52:298
chr1	9416346	rs3795309	C	T	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,313:0.99:315
chr1	9599823	rs148840119	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	9627521	rs6698575	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	9642329	rs56026893	C	T	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.39;ReadPosRankSum=-0.726;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:50,60:0.55:110
chr1	9655795	rs4073710	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr1	9657120	rs150789257	G	A	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr1	9658465	rs9430181	T	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,96:0.52:184
chr1	9658707	rs9430182	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,50:0.53:94
chr1	9661061	rs9430184	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr1	9670483	rs4244632	T	A	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:107,118:0.52:225
chr1	9670529	rs140667569	G	A	4008.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:222,203:0.48:425
chr1	9670834	rs4926472	C	T	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:100,98:0.49:198
chr1	9671257	rs70979767	CT	C	713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.956;QD=5.76;ReadPosRankSum=0.035;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:53,71:0.57:124
chr1	9714177	rs7511971	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr1	9714538	rs150187930	GT	GGAT,G	1101.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	0/1:0.53:55
chr1	9714539	rs56017286	T	G	1110.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.735;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.57;ReadPosRankSum=2.079;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:26,28:0.52:54
chr1	9714540	.	G	GAGGCCAGACC	2962	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=12;PP=2962;QD=20;SC=CAATGGTTGTGCGAAAGCCAG;SbPval=0.38;Source=Platypus;TC=27;TCF=1;TCR=26;TR=13;WE=9714552;WS=9714528;set=Platypus	GT:AD:AF:DP	1/0:14,13:0.48:27
chr1	9714541	rs56235370	C	CCA	1101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.297;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=6.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.60;ReadPosRankSum=1.658;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr1	9714542	.	GAA	CAG	2212	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=12;PP=2212;QD=174.266759605;SC=ATGGTTGTGCGAAAGCCAGCC;SbPval=0.97;Source=Platypus;TC=36;TCF=9;TCR=27;TR=13;WE=9714552;WS=9714528;set=Platypus	GT:AD:AF:DP	1/0:23,13:0.36:36
chr1	9714543	rs55851927	A	ACCCC	1110.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.36;ReadPosRankSum=1.226;SOR=1.871;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr1	9714544	rs55746245	A	AG	1110.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.599;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.21;ReadPosRankSum=1.559;SOR=2.115;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr1	9770690	.	CAG	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.736;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr1	9781412	rs12735071	C	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	9782556	rs11589267	C	T	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	9792105	rs377673198	G	GA	564.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	9816620	rs6680090	T	C	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	9910659	rs71643073	G	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr1	10001235	rs137978085	TTTCG	T	2267.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.96;QD=42.79;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	10027540	rs2890358	G	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	10041298	.	AT	A	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.512;QD=1.45;ReadPosRankSum=-0.354;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:108,37:0.26:145
chr1	10155453	rs368215683	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr1	10177680	.	T	TA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.549;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr1	10190644	rs373123755	C	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr1	10190884	rs2295294	A	T	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:62,56:0.47:118
chr1	10318652	rs12402052	C	G	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,124:0.51:244
chr1	10322054	rs4846209	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:87,91:0.51:178
chr1	10322153	rs4846210	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr1	10327407	rs12141246	A	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr1	10328338	rs1339458	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:73,77:0.51:150
chr1	10335315	rs6685773	G	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	10339209	rs35347635	CAT	C	4704.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:169,132:0.44:301
chr1	10342352	rs3748575	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	10342629	rs3748576	G	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	10355834	rs3753037	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	10356562	rs2275424	C	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	10356848	rs912961	A	G	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr1	10357206	rs58344165	A	AT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.575;QD=3.88;ReadPosRankSum=0.909;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr1	10384176	rs3831405	C	CTTGAAA	1044.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr1	10394536	rs2276100	C	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:97,79:0.45:176
chr1	10402009	rs33942183	CA	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.850;QD=5.34;ReadPosRankSum=1.472;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr1	10403482	rs1556916	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr1	10420918	rs3748578	G	A	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:92,81:0.47:173
chr1	10420937	rs3748579	C	T	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:111,95:0.46:206
chr1	10425117	rs34161257	AT	A	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	10428452	rs12130563	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr1	10431158	rs17411502	T	C	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=12.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.583;SOR=0.131;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	10435170	rs11121551	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr1	10435324	rs11121552	C	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-0.948;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:73,52:0.42:125
chr1	10459779	rs3737155	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr1	10460485	rs1049887	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr1	10460716	rs35314429	A	AT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=0.677;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	10471789	rs2236678	A	T	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	10473196	rs2229687	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-1.325;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:102,98:0.49:200
chr1	10479055	rs5772408	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.265;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.506;QD=1.05;ReadPosRankSum=1.132;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr1	10479635	rs2298570	C	G	5513.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:293,273:0.48:566
chr1	10479678	rs1889309	G	A	6171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.540;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.126;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:300,302:0.50:602
chr1	10502307	rs33919161	AT	A	708.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	10511330	rs3838398	AT	A	318.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	10511544	rs628462	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	10511589	rs666103	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	10529194	rs2781233	T	C	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr1	10555257	rs622623	C	T	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	10596388	rs2480779	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	10707812	rs3790638	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	10713765	rs284294	T	C	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	10714436	rs35604552	C	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr1	10719645	rs475980	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	11036050	rs79323519	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	11042201	rs56848003	C	CAG	587.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;MQ=60.36;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	11115169	rs191275910	G	T	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=-1.232;QD=13.24;ReadPosRankSum=0.278;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:29,46:0.61:75
chr1	11115177	rs376653450	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.641;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	11119899	rs7545802	T	C	1862.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.28;ReadPosRankSum=2.210;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:2,78:0.97:80
chr1	11133934	.	C	CA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.547;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	11134470	.	A	AT	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.953;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr1	11140620	rs1194754	A	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.680;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=-1.326;QD=1.56;ReadPosRankSum=0.334;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	11181327	rs11121691	C	T	10199.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	11187893	rs1770344	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	11190526	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.000;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr1	11190646	rs2275527	G	A	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	11561593	rs2817580	G	A	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:153,133:0.47:286
chr1	11575375	rs2594318	T	A	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr1	11579470	rs2072994	G	A	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:158,134:0.46:292
chr1	11593676	rs34784547	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr1	11593793	rs113116961	T	TGCACACACGCAC	5653.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	11594400	rs2235663	T	C	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:188,196:0.51:384
chr1	11595038	rs2076467	A	G	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:93,110:0.54:203
chr1	11595203	rs2235662	A	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,48:0.35:137
chr1	11708736	rs1055547	T	C	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	11709051	rs56192923	A	AG	3716.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=41.30;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	11709052	.	C	G	1497	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=3;HapScore=2;MGOF=15;MMLQ=27;MQ=60.29;NF=39;NR=36;PP=1497;QD=20.4236161673;SC=GCCCAGCCCACCCCAGCCCAG;SbPval=0.3;Source=Platypus;TC=86;TCF=50;TCR=36;TR=75;WE=11709069;WS=11709041;set=Platypus	GT:AD:AF:DP	1/1:11,75:0.87:86
chr1	11709052	.	C	CCCAG	3715.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.93;QD=41.29;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	11714368	rs2272983	T	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	11718195	rs3125816	A	G	77.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	11728894	rs3125818	G	A	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:150,151:0.50:301
chr1	11731927	rs3215521	AG	A	882.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr1	11734049	rs1063301	C	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr1	11735262	rs2233027	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr1	11735652	rs2233025	G	A	2768.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:106,135:0.56:241
chr1	11735841	rs2233024	C	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:92,138:0.60:230
chr1	11735877	rs2233022	A	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:114,74:0.39:188
chr1	11737051	rs2294638	G	C	10504.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,404:1.00:406
chr1	11740329	rs151210857	AGGCGTGAGCCAC	A	2947.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,78:0.52:149
chr1	11740358	rs7417320	A	G	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:97,104:0.52:201
chr1	11772303	rs1883574	A	G	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	11772491	rs76390929	C	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr1	11772526	rs1883573	A	G	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	11779499	rs4846028	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	11782781	rs7533583	G	C	1410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=-0.682;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:67,72:0.52:139
chr1	11782814	rs7414943	G	A	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=1.437;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:74,72:0.49:146
chr1	11782886	rs6540990	C	T	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	11796168	rs146190997	CGGGCG	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	11807426	rs12752700	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	11808706	rs11121819	T	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr1	11824242	rs4845876	A	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr1	11824303	rs4845877	T	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr1	11824346	rs4845878	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:81,70:0.46:151
chr1	11824556	rs4845879	A	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:70,50:0.42:120
chr1	11824575	rs10864536	T	C	1620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=-1.815;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:47,44:0.48:91
chr1	11824578	rs11121825	C	T	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-1.060;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:47,41:0.47:88
chr1	11825851	rs10218813	G	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:119,94:0.44:213
chr1	11826630	rs6668699	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr1	11827180	rs6540995	A	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.82;SOR=1.921;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	11827304	rs6540996	A	G	7182.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=-0.858;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:2,279:0.99:281
chr1	11827355	rs6540997	A	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=15.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.687;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:109,54:0.33:163
chr1	11828238	rs4845880	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr1	11828319	rs4845881	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr1	11831615	rs6667720	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:105,60:0.36:165
chr1	11831756	rs6680385	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	11832100	rs11121827	T	A	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr1	11832311	rs10779764	G	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr1	11836441	rs6699669	T	C	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.72;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	11836441	.	TG	CA,CG	750	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=26;MQ=60.0;NF=33,63;NR=21,40;PP=750,569;QD=14.8790347197;SC=AAGAGGGGCCTGAGGCAGCAG;SbPval=0.54;Source=Platypus;TC=106;TCF=65;TCR=41;TR=54,103;WE=11836450;WS=11836431;set=Platypus	GT:AF:DP	0/1:0.51:106
chr1	11836442	rs6659541	G	A	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-2.343;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:53,65:0.55:118
chr1	11836628	rs6699881	T	C	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.202;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:41,64:0.61:105
chr1	11836682	rs7538516	C	T	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr1	11838848	rs6697244	G	T	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=0.050;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:102,95:0.48:197
chr1	11839033	rs55668272	G	T	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:73,73:0.50:146
chr1	11839923	rs12561919	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-1.974;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr1	11839966	rs4846043	G	A	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-1.360;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr1	11839998	rs4846044	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr1	11842144	rs10864542	C	G	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-1.435;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr1	11844330	rs10864543	C	T	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:97,119:0.55:216
chr1	11845113	rs11587953	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	11845169	rs11586659	T	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:79,74:0.48:153
chr1	11847334	rs35134728	G	GGAA	499.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	11847740	rs35562212	CCT	C	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	11847759	rs3737966	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	11848139	rs11559040	G	A	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:117,96:0.45:213
chr1	11848879	rs2077360	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	11849447	rs868014	A	G	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	11854457	rs4846051	G	A	9391.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	11854476	rs1801131	T	G	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:170,131:0.44:301
chr1	11854755	rs1994798	G	A	3103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-2.670;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:225,170:0.43:395
chr1	11856378	rs1801133	G	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,57:0.44:129
chr1	11860465	rs13306567	C	G	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr1	11866183	rs13306560	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr1	11866442	rs111334345	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.769;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr1	11867044	rs3737964	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	11879468	rs78366115	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr1	11879685	rs198393	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:75,43:0.36:118
chr1	11879699	rs2050265	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,36:0.38:96
chr1	11883731	rs12567136	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr1	11884555	rs198400	A	G	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	11884619	rs41275474	G	A	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr1	11886124	rs111975660	C	CT	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.565;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr1	11886383	rs138460149	C	CTG	1398.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr1	11887125	rs41275476	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr1	11887303	rs7537765	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	11888384	rs198401	A	G	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr1	11889213	rs41275482	T	G	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	11889468	rs535107	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.286;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr1	11893830	rs74771026	T	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr1	11893869	rs76337233	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr1	11895966	rs41275496	G	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr1	11896345	rs198402	T	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	11897271	rs198405	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr1	11897592	rs198406	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:90,78:0.46:168
chr1	11898849	rs198409	T	G	6286.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:339,315:0.48:654
chr1	11900035	rs198410	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	11900142	rs77785799	C	T	3300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=0.829;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:169,155:0.48:324
chr1	11905981	rs5067	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr1	11905995	rs5066	C	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr1	11906068	rs5065	A	G	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:112,118:0.51:230
chr1	11917620	rs35207557	T	TA	560.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr1	11971266	rs143477276	C	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.064;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr1	11971345	rs4845889	T	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	11980449	rs17037529	T	C	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	11982544	rs2639453	T	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	11983041	rs33910280	G	A	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:70,68:0.49:138
chr1	11983206	rs3795408	A	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	11986229	rs112019995	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-1.002;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	12004479	rs112065997	TACACAC	T,TACAC	1885.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=32.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:0,35,23:0.60,0.40:58
chr1	12009956	rs7551175	G	A	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.07;ReadPosRankSum=-0.292;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:43,51:0.54:94
chr1	12010046	rs41278622	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	12010469	rs2273285	G	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:71,56:0.44:127
chr1	12024607	rs7529028	T	A	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:146,124:0.46:270
chr1	12026355	rs2230898	A	C	2743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-0.355;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:159,147:0.48:306
chr1	12027204	rs2273293	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chr1	12033113	rs3737961	A	G	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=9.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=-0.014;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:55,45:0.45:100
chr1	12033120	rs3820190	G	C	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.075;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=10.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=0.566;SOR=1.931;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr1	12056440	rs2236056	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	12058802	rs41278626	T	C	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:101,104:0.51:205
chr1	12062017	rs6680984	T	C	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:130,115:0.47:245
chr1	12062205	rs2236057	A	G	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:45,86:0.66:131
chr1	12065170	rs3766742	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	12065841	rs1042837	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:156,99:0.39:255
chr1	12066813	rs2273295	T	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr1	12067388	rs11586204	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr1	12069798	rs77262016	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,60:0.60:100
chr1	12071680	rs1042842	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr1	12082334	rs11553925	A	T	9721.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	12082461	rs11588712	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:144,109:0.43:253
chr1	12082881	rs11588779	C	T	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	12082926	rs2295283	A	G	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	12090001	rs4514248	T	C	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	12091210	rs946461	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	12157288	rs11569835	T	C	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr1	12164391	rs11569850	G	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr1	12164675	rs11569852	G	A	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:109,121:0.53:230
chr1	12170288	rs2297729	G	A	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:106,119:0.53:225
chr1	12175729	rs1763642	C	T	8601.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	12175818	rs598661	A	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:109,92:0.46:201
chr1	12183174	rs4846096	A	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	12183245	rs2486316	G	T	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:73,68:0.48:141
chr1	12198297	rs476488	T	C	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	12198635	rs6419481	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	12248942	rs945439	A	G	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:116,101:0.47:217
chr1	12248965	rs945438	A	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:88,71:0.45:159
chr1	12249020	rs1815530	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr1	12249031	rs1201157	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr1	12251191	rs472093	T	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,29:0.43:67
chr1	12251765	rs498906	T	G	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:94,87:0.48:181
chr1	12251808	rs653667	T	G	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:143,131:0.48:274
chr1	12252333	.	CTGTG	C	657.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr1	12252892	rs1768642	C	T	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr1	12252955	rs1061622	T	G	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr1	12253351	rs636964	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr1	12254201	rs2275416	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	12261884	rs185947453	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	12261972	rs5746051	A	G	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr1	12401868	rs28551666	A	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:100,99:0.50:199
chr1	12418700	rs10864552	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	12439825	rs368778602	AT	A	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=0.623;QD=4.72;ReadPosRankSum=0.570;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	12470019	rs41279470	T	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,45:0.46:97
chr1	12567232	rs7554257	A	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	12638964	rs2275875	T	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	12639018	rs2275874	C	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	12639168	rs3128461	A	G	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	12776218	rs3000860	A	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	12776344	rs3000859	A	T	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-1.440;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:68,69:0.50:137
chr1	12779560	rs3010876	T	C	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:134,140:0.51:274
chr1	12779618	rs3010877	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:96,89:0.48:185
chr1	12785093	rs4361998	T	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	12785494	rs7513079	G	T	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:132,110:0.45:242
chr1	12786070	rs3000930	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	12820870	rs1132185	T	C	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr1	12835868	rs1812242	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr1	12835994	rs145223711	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr1	12837634	rs848578	T	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=0.629;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:74,69:0.48:143
chr1	12837840	rs848577	G	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	12854428	rs1769774	C	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:100,70:0.41:170
chr1	12854530	rs1063776	C	G	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:207,145:0.41:352
chr1	12854544	rs1063778	T	C	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:185,133:0.42:318
chr1	12888601	rs113914674	G	GC	1375.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	12888706	rs61777005	C	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=0.494;QD=9.40;ReadPosRankSum=1.434;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	12907282	rs139731855	G	C	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=6.862;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-9.048;QD=8.65;ReadPosRankSum=1.313;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:164,57:0.26:221
chr1	12907284	rs149796618	TG	CC	1947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=5.627;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-9.187;QD=8.73;ReadPosRankSum=1.193;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:165,58:0.26:223
chr1	12907316	rs112607517	T	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.737;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-13.452;QD=3.65;ReadPosRankSum=1.134;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:201,69:0.26:270
chr1	12907350	rs2359486	CA	TG	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=10.587;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-15.596;QD=5.18;ReadPosRankSum=0.558;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:272,62:0.19:334
chr1	12907370	rs2076063	A	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=11.651;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-13.239;QD=2.28;ReadPosRankSum=-2.181;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:313,51:0.14:364
chr1	12907379	rs74055698	TC	CA	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.631;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=25.761;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-10.919;QD=1.30;ReadPosRankSum=-0.406;SOR=1.906;set=HC	GT:AD:AF:DP	0/1:358,36:0.09:394
chr1	12907385	rs150590256	G	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.038;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=20.751;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-11.271;QD=0.62;ReadPosRankSum=-1.526;SOR=2.630;set=HC	GT:AD:AF:DP	0/1:377,35:0.08:412
chr1	12907777	rs28391533	T	C	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.034;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=40.746;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-14.009;QD=4.98;ReadPosRankSum=-0.908;SOR=2.922;set=HC	GT:AD:AF:DP	0/1:257,48:0.16:305
chr1	12907781	rs28441396	T	C	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.896;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=31.739;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-12.638;QD=4.39;ReadPosRankSum=-0.957;SOR=2.349;set=HC	GT:AD:AF:DP	0/1:267,53:0.17:320
chr1	12907798	rs150096254	A	C	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=23.947;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-9.958;QD=6.32;ReadPosRankSum=-0.364;SOR=1.823;set=HC	GT:AD:AF:DP	0/1:283,70:0.20:353
chr1	12907802	rs138087690	CC	TT	2394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=28.072;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-9.295;QD=6.45;ReadPosRankSum=-0.452;SOR=1.915;set=HC	GT:AD:AF:DP	0/1:294,77:0.21:371
chr1	12907829	rs74866336	T	C	3148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=5.734;QD=7.12;ReadPosRankSum=-0.167;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:275,167:0.38:442
chr1	12907837	rs1736811	C	T	2189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=5.728;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-5.878;QD=4.91;ReadPosRankSum=-0.684;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:317,129:0.29:446
chr1	12907885	rs848418	T	C	7071.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:182,330:0.64:512
chr1	12908236	rs1736809	G	T	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=5.281;MLEAC=1;MLEAF=0.500;MQ=49.13;MQRankSum=-7.163;QD=10.32;ReadPosRankSum=-3.096;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:100,48:0.32:148
chr1	12908243	rs1736808	A	G	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.585;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=49.44;MQRankSum=-7.301;QD=10.09;ReadPosRankSum=-1.357;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:92,37:0.29:129
chr1	12919081	rs45443899	C	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr1	12919983	rs77138000	G	A	3529.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:221,179:0.45:400
chr1	12921127	rs12139549	A	G	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.557;QD=8.57;ReadPosRankSum=-0.497;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:129,106:0.45:235
chr1	13183439	rs28713604	T	C	2271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-6.244;QD=8.06;ReadPosRankSum=1.552;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:166,116:0.41:282
chr1	13183511	rs72864546	T	C	3026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.932;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=8.226;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-10.045;QD=9.31;ReadPosRankSum=-0.858;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:225,100:0.31:325
chr1	13183528	rs76937665	A	C	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.942;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=5.477;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-10.608;QD=8.35;ReadPosRankSum=0.105;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:223,74:0.25:297
chr1	13183532	rs77505369	CC	TT	2395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.093;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=4.574;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-10.406;QD=7.96;ReadPosRankSum=-0.362;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:227,74:0.25:301
chr1	13183567	rs78160026	C	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=13.427;MLEAC=1;MLEAF=0.500;MQ=56.48;MQRankSum=-11.793;QD=3.90;ReadPosRankSum=-2.792;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:199,44:0.18:243
chr1	13183573	rs76669210	G	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.050;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=32.428;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-11.641;QD=2.89;ReadPosRankSum=-0.642;SOR=3.110;set=HC	GT:AD:AF:DP	0/1:193,30:0.13:223
chr1	13183966	rs80025711	G	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=18.156;MLEAC=1;MLEAF=0.500;MQ=52.61;MQRankSum=-5.552;QD=0.69;ReadPosRankSum=-0.611;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:118,22:0.16:140
chr1	13695974	rs142734546	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	13802325	rs3013105	T	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	13839382	rs2990682	C	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr1	13936822	rs404658	G	T	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	13937089	rs2487643	G	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	13940365	.	CTTT	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.82;ReadPosRankSum=1.368;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	13940864	rs2486188	C	G	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	14042309	rs7411176	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	14049497	rs11580827	C	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	14057425	rs35643856	G	GA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=3.220;QD=1.28;ReadPosRankSum=1.628;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr1	14059395	rs33969518	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	14096821	rs1210110	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	14099763	rs10803426	C	T	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	14105139	rs2076324	T	A	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:8,260:0.97:268
chr1	14105298	rs1203678	G	A	9289.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	14106394	rs2308040	A	ACTC	10894.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	14107360	rs41269807	T	A	6485.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:367,328:0.47:695
chr1	14109114	rs1203651	A	G	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	14143003	rs1046331	A	G	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	14149505	rs2697970	C	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	14149601	rs2697969	C	T	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	14149622	rs2697968	T	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	14220186	rs1358577	A	G	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:105,89:0.46:194
chr1	14507057	rs10928050	A	G	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:72,78:0.52:150
chr1	15370458	rs41310369	G	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr1	15386573	.	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:87,70:0.45:157
chr1	15427934	rs10927676	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	15427982	rs502918	G	A	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:102,87:0.46:189
chr1	15428358	rs477953	T	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	15438990	rs10803354	G	A	1584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-1.374;QD=7.37;ReadPosRankSum=-0.974;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:132,83:0.39:215
chr1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	1641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.271;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.510;QD=16.58;ReadPosRankSum=-0.960;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:54,45:0.45:99
chr1	15490865	rs61561984	T	A	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:97,85:0.47:182
chr1	15497727	rs6429722	T	C	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	15497844	rs10429935	T	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	15541412	.	G	A	21	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=3;HapScore=2;MGOF=27;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=21;QD=18.5904041824;SC=GCAGCCATCCGCACGGGAGGC;SbPval=1.0;Source=Platypus;TC=8;TCF=8;TCR=0;TR=3;WE=15541420;WS=15541407;set=Platypus	GT:AD:AF:DP	1/0:5,3:0.38:8
chr1	15541537	rs3753314	C	T	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	15541607	rs3820065	T	C	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.933;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-0.219;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:68,91:0.57:159
chr1	15573699	.	A	AC	89	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=4;HapScore=2;MGOF=3;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=89;QD=41.0;SC=ATTAGGCTGGACCCCGCGGCG;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=3;WE=15573707;WS=15573689;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr1	15650784	rs3765354	T	G	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=-1.096;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	15650791	rs3765355	G	C	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=-1.956;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	15651062	rs3765356	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr1	15653503	rs7532559	A	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr1	15653563	rs3765357	C	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:129,99:0.43:228
chr1	15654737	rs144888008	C	CT	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.150;QD=4.12;ReadPosRankSum=2.005;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr1	15656200	.	T	TA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.887;QD=0.90;ReadPosRankSum=1.420;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	15668276	rs763821	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr1	15692510	rs34038275	G	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr1	15702130	rs17368978	A	G	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:63,63:0.50:126
chr1	15702297	rs2496342	T	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr1	15707984	rs2473333	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	15708540	rs1010294	A	G	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-2.539;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:83,53:0.39:136
chr1	15709555	rs3820067	A	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:74,45:0.38:119
chr1	15710411	rs2496338	G	C	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.580;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:51,53:0.51:104
chr1	15714774	.	T	A	55	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=5;HapScore=2;MGOF=123;MMLQ=22;MQ=57.88;NF=2;NR=5;PP=55;QD=12.8244589353;SC=CCTCTGCCCCTCGTCCCTCCC;SbPval=0.6;Source=Platypus;TC=22;TCF=6;TCR=16;TR=7;WE=15714782;WS=15714764;set=Platypus	GT:AD:AF:DP	1/0:15,7:0.32:22
chr1	15714809	.	G	C	247	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=3;HapScore=2;MGOF=225;MMLQ=28;MQ=55.01;NF=0;NR=12;PP=247;QD=23.4809343789;SC=CCCTCCCCAGGCCCTGCCCCA;SbPval=1.0;Source=Platypus;TC=22;TCF=6;TCR=16;TR=12;WE=15714817;WS=15714799;set=Platypus	GT:AD:AF:DP	1/0:10,12:0.55:22
chr1	15714831	.	CC	TC	1410	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=76;MMLQ=12;MQ=57.83;NF=4,16;NR=3,10;PP=1410,892;QD=204.857142857;SC=CTCCCTCCCTCCCCTCCCCAG;SbPval=0.33;Source=Platypus;TC=36;TCF=15;TCR=21;TR=7,26;WE=15714850;WS=15714821;set=Platypus	GT:AD:AF:DP	0/1:17,26:0.60:43
chr1	15714831	rs113932963	CC	CCATTC	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	0/1:0.43:30
chr1	15714842	rs3002000	G	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	15717838	rs2473338	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr1	15724003	rs2253371	A	G	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:61,70:0.53:131
chr1	15724033	rs2253372	A	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:39,46:0.54:85
chr1	15754484	rs2473356	T	C	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=1.249;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr1	15769139	rs3765373	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:69,64:0.48:133
chr1	15769876	rs35149641	G	GC	4042.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	15783096	rs5772641	GA	G	5300.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.525;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.85;ReadPosRankSum=-0.214;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:7,260:0.97:267
chr1	15783117	rs5772642	C	CA	11958.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	15788269	rs3737696	A	C	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	15808198	rs7520335	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;MQ=59.57;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	15808702	rs4661635	C	T	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	15808767	rs3820071	G	A	11647.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr1	15808872	rs3766160	G	A	13201.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:2,500:1.00:502
chr1	15809876	rs10927792	G	A	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr1	15812432	rs6429745	A	G	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	15813751	rs2011159	C	T	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	15813969	rs3737704	A	C	3641.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	15820576	rs2020900	T	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	15820607	rs2020895	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	15820618	rs2020898	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	15822073	rs4646090	A	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	15832383	rs1800614	G	T	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	15832543	rs1052576	T	C	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	15834297	rs2020903	G	A	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	15834491	rs4646032	G	A	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	15844615	rs1132312	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	15844926	rs1820205	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	15845022	rs112189619	C	CTGAG	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	15850483	rs4645985	G	A	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	15850553	rs4645984	C	CGGGGGCG	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	15850613	rs1052571	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	15873386	rs7515244	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	15873410	.	CTT	C	1710.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=-0.548;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:13,75:0.85:88
chr1	15874961	rs2295626	T	A	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	15890342	rs71002909	CA	C	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;QD=17.33;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	15906696	rs34166013	CT	C	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.756;QD=10.90;ReadPosRankSum=-0.234;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr1	15909547	rs6429756	G	A	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	15909624	rs111921608	TGAGTACAG	T	2257.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	15909850	rs6429757	C	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	15909895	rs6429758	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	15911031	rs10927808	T	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	15911349	rs3737705	G	A	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	15911493	rs6687474	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	15959886	rs3795762	C	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	16011005	.	G	GGGC	1643.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.386;QD=22.52;ReadPosRankSum=1.055;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:4,69:0.95:73
chr1	16065303	rs147907985	ACACACT	A	1339.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	16095316	rs2271545	C	T	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	16096934	rs10927851	C	T	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.23;SOR=2.056;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	16097237	rs10803398	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	16242620	rs12063905	C	A	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:229,136:0.37:365
chr1	16245362	rs848201	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.138;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr1	16255644	rs848208	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr1	16256007	rs848209	T	C	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:134,138:0.51:272
chr1	16259813	rs848210	A	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:73,97:0.57:170
chr1	16260916	rs848211	C	T	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=4.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-1.158;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:104,140:0.57:244
chr1	16262404	rs61749277	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr1	16264264	rs848213	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:129,134:0.51:263
chr1	16265422	rs848214	A	G	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:89,111:0.56:200
chr1	16271180	rs848216	T	C	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr1	16272250	rs848217	A	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:97,84:0.46:181
chr1	16272933	rs61782258	A	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr1	16274769	rs698891	C	T	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:129,119:0.48:248
chr1	16330816	rs1763617	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:144,106:0.42:250
chr1	16330937	rs1763615	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr1	16332679	rs3738646	T	C	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:153,150:0.50:303
chr1	16342237	rs1739840	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr1	16344360	rs732286	A	G	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-0.731;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:46,55:0.54:101
chr1	16344402	rs945416	G	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=0.000;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:36,42:0.54:78
chr1	16344466	rs3738640	C	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr1	16344494	rs1572381	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr1	16344625	rs945417	C	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,66:0.58:114
chr1	16344664	rs872222	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr1	16344684	rs56783248	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr1	16344730	rs945418	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	16345619	rs945422	T	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr1	16346009	rs3841842	G	GC	1116.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr1	16349336	rs61771056	C	T	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:127,127:0.50:254
chr1	16351275	rs10927887	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr1	16352937	rs1010069	G	A	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr1	16353400	rs9442216	T	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	16354590	rs12126269	A	T	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:182,194:0.52:376
chr1	16355425	rs45451292	A	G	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:134,150:0.53:284
chr1	16356501	rs1805152	G	A	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=-0.709;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:58,75:0.56:133
chr1	16356583	rs3737218	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr1	16358148	rs2015509	T	C	7946.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr1	16358685	rs6669935	C	G	10789.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	16358932	rs10803407	T	C	15806.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr1	16359051	rs10927892	C	A	3900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-0.438;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:168,183:0.52:351
chr1	16359051	.	CA	AG	2290	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=23;MQ=60.0;NF=66;NR=92;PP=2290;QD=14.8320751574;SC=GTGACACACGCAGCCCCCGGG;SbPval=0.55;Source=Platypus;TC=329;TCF=139;TCR=190;TR=158;WE=16359060;WS=16359041;set=Platypus	GT:AD:AF:DP	1/0:171,158:0.48:329
chr1	16359052	rs10927893	A	G	12659.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.97;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	16359106	rs10803408	C	T	2059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=2.747;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:60,57:0.49:117
chr1	16359113	.	C	T	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=8.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=2.008;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:48,51:0.52:99
chr1	16359123	rs9442217	A	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	16361875	rs11807054	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.83;QD=27.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	16361916	rs11811753	G	A	373.56	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	16362005	.	GCCCT	G	21	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=4;HapScore=1;MGOF=13;MMLQ=23;MQ=53.31;NF=1;NR=1;PP=21;QD=24.5;SC=CCAGCTCCTCGCCCTCCCTCT;SbPval=0.23;Source=Platypus;TC=16;TCF=2;TCR=14;TR=2;WE=16362016;WS=16361995;set=Platypus	GT:AD:AF:DP	0/1:14,2:0.12:16
chr1	16362561	rs55731534	C	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	16362621	rs2009044	G	A	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	16362661	rs3978493	A	C	7164.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr1	16363132	rs1889787	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr1	16363148	rs150833594	AG	A	806.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr1	16363237	rs143626665	C	T	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.326;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=50.72;MQRankSum=-1.177;QD=5.68;ReadPosRankSum=-0.780;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr1	16363243	rs35030434	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.103;MLEAC=1;MLEAF=0.500;MQ=50.28;MQRankSum=-0.448;QD=4.94;ReadPosRankSum=1.077;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr1	16370899	rs945394	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	16371067	rs2015352	G	T	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:133,145:0.52:278
chr1	16371932	rs6604909	A	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	16372003	rs6604910	G	C	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:72,76:0.51:148
chr1	16372282	rs67016480	GT	G	155.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.930;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	16372283	rs6604911	T	G	379.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=0.973;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	16373124	rs5257	A	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	16373199	rs35820664	CCTT	C	11181.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	16373282	rs2095540	A	G	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	16374533	rs2014562	G	C	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr1	16374622	rs2863440	C	G	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	16374656	rs2902490	A	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr1	16374994	rs1889788	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	16375063	rs1889789	CA	GC	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	16375210	rs9633514	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	16376191	rs7367494	C	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	16376230	rs59006537	A	AT	6586.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	16376232	rs59924562	A	T	6595.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.15;QD=45.18;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	16376238	rs34589727	TC	T	4610.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	16376278	rs7365182	G	A	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr1	16376319	rs7368151	T	C	8620.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	16376458	rs7368166	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	16376494	rs72651918	C	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr1	16377660	.	G	A	919.77	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr1	16378649	rs2297726	C	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr1	16379008	rs2050522	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	16379015	rs199907733	G	GGGGGCTGGGA	377.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	16380196	rs5253	T	C	10673.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	16380243	rs2275166	A	G	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.38;QD=42.54;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	16380252	rs2275167	C	T	8592.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.95;QD=45.95;SOR=1.937;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	16381718	rs1414498	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.92;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	16381722	rs12691552	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	16381792	rs12047858	T	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	16381816	rs12029508	C	T	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	16382086	rs2297727	C	T	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	16382730	rs12030469	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	16382791	rs12023153	G	C	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	16382827	rs77508204	CTCT	C	21234.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr1	16382831	rs61769890	T	A	21496.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr1	16382834	rs61769891	T	A	21630.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr1	16382877	rs7517792	A	G	21193.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr1	16383329	rs138507185	T	TC	987.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr1	16383336	rs12746138	G	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	16383448	rs10803415	A	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	16383581	rs1057844	G	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.329;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.500;MQ=43.35;MQRankSum=1.500;QD=34.13;ReadPosRankSum=2.153;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr1	16383605	rs1057845	A	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr1	16383668	rs6660218	T	G	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	16383682	rs1057854	G	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:105,42:0.29:147
chr1	16383742	rs1057857	C	G	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:53,147:0.73:200
chr1	16384986	rs28496958	G	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	16384998	rs1807285	G	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.84;MQRankSum=-1.415;QD=6.92;ReadPosRankSum=-0.621;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	16384998	.	GG	CA	137	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=5;HapScore=4;MGOF=9;MMLQ=23;MQ=47.62;NF=3;NR=1;PP=137;QD=47.6169687156;SC=GGGAGCCCGGGGGGTGGGTCC;SbPval=0.58;Source=Platypus;TC=15;TCF=12;TCR=3;TR=4;WE=16385007;WS=16384976;set=Platypus	GT:AD:AF:DP	0/1:11,4:0.27:15
chr1	16384999	rs1807284	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-2.048;QD=7.98;ReadPosRankSum=-1.441;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	16385042	rs77667563	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.925;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=0.055;QD=4.05;ReadPosRankSum=-0.131;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	16385175	rs17853748	G	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=51.58;MQRankSum=-5.060;QD=12.86;ReadPosRankSum=1.196;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr1	16385178	rs80297394	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=51.58;MQRankSum=5.086;QD=8.65;ReadPosRankSum=-0.239;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	16385184	rs75273615	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.081;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.691;MLEAC=1;MLEAF=0.500;MQ=51.69;MQRankSum=-3.259;QD=1.02;ReadPosRankSum=0.794;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr1	16385248	rs74054903	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.604;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-3.806;QD=8.51;ReadPosRankSum=-1.521;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	16385248	.	CCA	TCG	251	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=23;MQ=49.36;NF=2;NR=5;PP=251;QD=43.4954106946;SC=GAATGGCGTCCCAGATCCAGC;SbPval=0.9;Source=Platypus;TC=19;TCF=9;TCR=10;TR=7;WE=16385258;WS=16385238;set=Platypus	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	16385250	rs74054904	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.867;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=54.72;MQRankSum=-3.806;QD=8.51;ReadPosRankSum=-1.326;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	16385323	rs77017249	A	G	273.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.05;QD=39.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	16385330	rs3978476	G	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.98;QD=40.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	16385797	rs3978478	C	G	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:41,89:0.68:130
chr1	16385874	rs3978464	T	C	3039.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:308,168:0.35:476
chr1	16385969	rs114702760	C	G	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.474;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=4.795;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-1.977;QD=2.99;ReadPosRankSum=1.592;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:260,113:0.30:373
chr1	16385980	rs3884058	G	A	8736.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr1	16386008	rs2863452	T	C	6765.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	16386065	rs61769893	T	A	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr1	16386247	rs2095543	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.54;QD=26.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	16386305	rs372070031	G	GC	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=52.73;MQRankSum=3.000;QD=16.78;ReadPosRankSum=-0.725;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr1	16386416	rs9442230	G	A	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	16386447	rs11576236	G	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	16386495	rs71510977	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	16388485	rs58894453	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.15;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	16388556	rs2863455	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.70;QD=42.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	16388565	rs7524413	C	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.44;QD=40.92;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	16388646	rs2863456	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	16388709	rs28570004	G	T	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	16388766	rs3978469	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	16388875	rs34673312	GCCC	G,GC	1220.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.10;QD=33.91;SOR=3.026;set=HC	GT:AD:AF:DP	1/2:0,17,19:0.47,0.53:36
chr1	16525056	rs451260	G	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.368;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr1	16525549	rs221032	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr1	16528218	rs6676143	G	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr1	16528233	rs221037	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr1	16528469	rs58225172	GCCTACCCTAGGGAC	GTACCCTAGGGAC,G	2124.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AF:DP	1/1:1.00:49
chr1	16528472	rs200243292	TACCCTAGGGACC	T	2122.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=2.078;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	16528484	.	C	T	949	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=12;NR=25;PP=949;QD=26.5884111499;SC=CCCTAGGGACCCATGTCTGCC;SbPval=0.51;Source=Platypus;TC=38;TCF=12;TCR=26;TR=37;WE=16528492;WS=16528459;set=Platypus	GT:AD:AF:DP	1/1:1,37:0.97:38
chr1	16528823	rs71574165	GCCATGGGGACGGGGTGCCCA	G	726.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr1	16528843	rs1693540	A	G	406.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr1	16529117	rs221039	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,53:0.48:110
chr1	16532803	rs221050	G	A	2732.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:135,133:0.50:268
chr1	16532848	rs221051	A	G	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:209,181:0.46:390
chr1	16533022	rs221052	C	T	12675.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr1	16533085	rs34933259	A	AC	2055.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr1	16533096	rs221053	C	T	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-0.763;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:68,52:0.43:120
chr1	16533105	rs221054	G	C	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=7.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=-1.323;SOR=0.063;set=HC	GT:AD:AF:DP	0/1:59,47:0.44:106
chr1	16533817	rs170234	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	16534002	rs221056	C	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:82,101:0.55:183
chr1	16534255	rs221057	C	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:109,80:0.42:189
chr1	16534646	rs221058	C	G	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:105,92:0.47:197
chr1	16534730	rs221059	G	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	16543175	rs221024	A	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	16558838	rs6700888	C	A	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr1	16562968	rs6603850	C	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr1	16621183	rs1007150	C	T	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr1	16641899	rs2273311	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,72:0.44:163
chr1	16730582	rs17419150	C	G	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr1	16731510	rs525409	C	G	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=0.451;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:62,78:0.56:140
chr1	16731646	rs3106498	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.23;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	16731646	.	TGTCATTCATCCCATT	CCTCATTTATCCCATC,CGTCATTCATCCCATT	1435	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=2;MMLQ=26;MQ=60.0;NF=9,27;NR=12,32;PP=1165,1435;QD=58.9746607077;SC=TTCTTGTTTCTGTCATTCATC;SbPval=0.67;Source=Platypus;TC=59;TCF=27;TCR=32;TR=21,59;WE=16731669;WS=16731636;set=Platypus	GT:AF:DP	0/1:0.36:59
chr1	16731647	rs526481	G	C	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.008;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=0.628;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr1	16731653	rs526489	C	T	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.92;ReadPosRankSum=-1.108;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr1	16731661	rs526513	T	C	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.87;ReadPosRankSum=-2.310;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr1	16736546	rs10907226	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr1	16778265	rs279782	G	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr1	16802342	rs140332538	C	T	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr1	16802890	rs696095	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	16803267	rs156846	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	16862296	rs1759227	G	C	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=10.342;MLEAC=1;MLEAF=0.500;MQ=49.46;MQRankSum=-5.907;QD=4.17;ReadPosRankSum=0.111;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:158,52:0.25:210
chr1	16862454	rs71248115	T	G	23963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=1471;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=48.40;MQRankSum=-22.864;QD=16.29;ReadPosRankSum=0.503;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:834,637:0.43:1471
chr1	16862461	rs145386412	T	A	24309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;ClippingRankSum=0.000;DB;DP=1503;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=48.35;MQRankSum=-23.158;QD=16.17;ReadPosRankSum=0.357;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:845,658:0.44:1503
chr1	16862502	rs141629643	A	G	14673.77	.	AC=1;AF=0.500;AN=2;DB;DP=1575;set=Intersection	GT:AD:AF:DP	0/1:858,715:0.45:1573
chr1	16862708	rs1762987	T	G	1951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.922;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.296;MLEAC=1;MLEAF=0.500;MQ=47.75;MQRankSum=-6.299;QD=22.96;ReadPosRankSum=-1.901;SOR=1.760;set=HC	GT:AD:AF:DP	0/1:33,52:0.61:85
chr1	16862712	rs61769538	G	T	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.965;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.541;MLEAC=1;MLEAF=0.500;MQ=47.69;MQRankSum=-6.423;QD=25.62;ReadPosRankSum=-2.387;SOR=1.919;set=HC	GT:AD:AF:DP	0/1:29,45:0.61:74
chr1	16862714	rs61769539	T	G	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.599;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.500;MQ=47.69;MQRankSum=-6.539;QD=24.64;ReadPosRankSum=-2.218;SOR=1.842;set=HC	GT:AD:AF:DP	0/1:29,43:0.60:72
chr1	16862727	.	A	C	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.534;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-1.742;QD=1.94;ReadPosRankSum=-1.567;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr1	16862732	.	A	G	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=6.351;MLEAC=1;MLEAF=0.500;MQ=47.98;MQRankSum=-5.773;QD=16.07;ReadPosRankSum=-1.964;SOR=2.570;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr1	16863257	.	A	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.224;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=35.394;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-13.629;QD=0.55;ReadPosRankSum=-2.907;SOR=2.949;set=HC	GT:AD:AF:DP	0/1:300,36:0.11:336
chr1	16863259	rs114741004	T	G	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=21.710;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-15.265;QD=2.44;ReadPosRankSum=-3.173;SOR=1.993;set=HC	GT:AD:AF:DP	0/1:296,48:0.14:344
chr1	16863304	rs61769542	T	C	5265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=8.501;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-14.513;QD=8.86;ReadPosRankSum=-3.948;SOR=1.326;set=HC	GT:AD:AF:DP	0/1:438,156:0.26:594
chr1	16863308	rs112689425	G	T	5541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.801;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=8.261;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-14.384;QD=9.01;ReadPosRankSum=-2.466;SOR=1.290;set=HC	GT:AD:AF:DP	0/1:453,162:0.26:615
chr1	16863313	rs76539488	C	T	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.836;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=6.783;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-8.107;QD=2.44;ReadPosRankSum=0.483;SOR=1.261;set=HC	GT:AD:AF:DP	0/1:504,128:0.20:632
chr1	16863314	rs74927161	A	G	5801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=8.239;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-14.432;QD=9.11;ReadPosRankSum=-1.284;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:462,175:0.27:637
chr1	16863328	rs61769543	T	G	5321.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:466,225:0.33:691
chr1	16863352	rs61769544	C	T	6284.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:443,266:0.38:709
chr1	16863382	rs1759237	A	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=3.862;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-17.254;QD=0.52;ReadPosRankSum=5.223;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:496,82:0.14:578
chr1	16863398	rs61769545	A	C	5904.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:224,266:0.54:490
chr1	16946407	rs10796418	T	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.857;QD=6.58;ReadPosRankSum=-1.786;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr1	16946535	rs437905	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	16948473	rs446948	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=6.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=1.758;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr1	16948474	rs2781579	C	G	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.82;ReadPosRankSum=1.561;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:27,51:0.65:78
chr1	16948509	rs11260842	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=0.576;QD=1.42;ReadPosRankSum=0.743;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr1	16950449	.	A	G	31	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=23;MQ=48.61;NF=2;NR=3;PP=31;QD=13.1542425094;SC=GCCAGCTGCCATTGCACCTCA;SbPval=0.72;Source=Platypus;TC=9;TCF=4;TCR=5;TR=5;WE=16950457;WS=16950439;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	16950470	rs12144467	C	T	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.52;MQRankSum=1.150;QD=10.70;ReadPosRankSum=0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	16969246	rs11260857	G	A	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:252,114:0.31:366
chr1	16969381	rs9727604	C	T	6266.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:122,270:0.69:392
chr1	16971948	rs2209174	C	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	16972067	rs1360574	CA	TG	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=49.65;MQRankSum=0.069;QD=5.32;ReadPosRankSum=1.398;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr1	16972134	rs4661404	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-8.091;QD=1.69;ReadPosRankSum=1.762;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr1	16972239	rs11260860	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:34,7:0.17:41
chr1	16972940	rs1970921	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:136,65:0.32:201
chr1	16973152	rs1970920	A	G	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-7.988;QD=5.27;ReadPosRankSum=-1.015;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:178,59:0.25:237
chr1	16973155	rs371280231	C	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=9.648;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-12.867;QD=1.32;ReadPosRankSum=-5.061;SOR=1.740;set=HC	GT:AD:AF:DP	0/1:224,21:0.09:245
chr1	16973159	rs374474199	A	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=12.705;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-13.454;QD=1.44;ReadPosRankSum=-5.422;SOR=1.766;set=HC	GT:AD:AF:DP	0/1:227,31:0.12:258
chr1	16973184	rs55828106	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.936;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=2.384;QD=1.36;ReadPosRankSum=0.320;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:221,44:0.17:265
chr1	16973198	rs368927391	G	A	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=8.453;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-9.794;QD=2.07;ReadPosRankSum=2.731;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:196,47:0.19:243
chr1	16973606	rs76859932	G	T	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=54.22;MQRankSum=0.692;QD=1.40;ReadPosRankSum=0.728;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:467,95:0.17:562
chr1	16973919	rs141898836	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,66:0.32:207
chr1	16973996	rs200256873	A	G	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-2.386;QD=2.94;ReadPosRankSum=-1.381;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr1	16974010	rs201140718	G	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.30;MQRankSum=-2.254;QD=2.95;ReadPosRankSum=-1.624;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	16974021	rs142740321	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=7.670;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=1.114;QD=0.72;ReadPosRankSum=0.104;SOR=2.775;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr1	16974243	rs372123873	G	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=45.84;MQRankSum=-3.693;QD=3.19;ReadPosRankSum=-1.089;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr1	16974256	.	G	C	1227.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr1	16974277	rs201514041	A	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=52.48;MQRankSum=-1.584;QD=0.47;ReadPosRankSum=0.436;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:136,18:0.12:154
chr1	16974511	rs58679574	G	A	5052.77	.	AC=1;AF=0.500;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	0/1:622,290:0.32:912
chr1	16974637	rs16854791	T	C	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:182,114:0.39:296
chr1	16974662	rs28460410	C	A	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:152,78:0.34:230
chr1	16974666	rs28503658	C	T	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=56.28;MQRankSum=0.202;QD=3.36;ReadPosRankSum=1.289;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:167,52:0.24:219
chr1	16974745	rs28526603	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.364;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=26.552;MLEAC=1;MLEAF=0.500;MQ=49.43;MQRankSum=-5.478;QD=2.16;ReadPosRankSum=0.365;SOR=4.574;set=HC	GT:AD:AF:DP	0/1:77,15:0.16:92
chr1	16974758	rs28484638	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,23:0.29:80
chr1	16974780	rs28537673	C	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.994;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=13.600;MLEAC=1;MLEAF=0.500;MQ=48.38;MQRankSum=-4.098;QD=0.93;ReadPosRankSum=1.975;SOR=3.486;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr1	16974786	rs28622547	G	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=26.367;MLEAC=1;MLEAF=0.500;MQ=48.26;MQRankSum=-5.769;QD=6.27;ReadPosRankSum=1.000;SOR=4.849;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	16974869	rs4570422	G	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr1	16974901	rs28562993	A	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.959;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=11.331;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-7.377;QD=1.32;ReadPosRankSum=-2.980;SOR=3.309;set=HC	GT:AD:AF:DP	0/1:50,6:0.11:56
chr1	16974915	rs59636978	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.560;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=10.767;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-7.642;QD=1.60;ReadPosRankSum=-1.774;SOR=3.235;set=HC	GT:AD:AF:DP	0/1:53,7:0.12:60
chr1	16974972	rs58464479	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-12.364;QD=3.99;ReadPosRankSum=-0.830;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:117,40:0.25:157
chr1	16975002	rs2093773	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:169,78:0.32:247
chr1	16975045	rs55763726	G	A	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.754;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=11.527;MLEAC=1;MLEAF=0.500;MQ=51.28;MQRankSum=-7.269;QD=1.34;ReadPosRankSum=-2.606;SOR=1.624;set=HC	GT:AD:AF:DP	0/1:370,68:0.16:438
chr1	16975202	rs28602904	T	C	7812.77	.	AC=1;AF=0.500;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	0/1:551,405:0.42:956
chr1	16975230	rs2761535	G	C	18266.77	.	AC=2;AF=1.00;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	1/1:97,783:0.89:880
chr1	16975724	rs149232270	GC	G	1084.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=-3.661;QD=6.74;ReadPosRankSum=1.166;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:116,45:0.28:161
chr1	16975868	rs200822664	T	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=7.633;MLEAC=1;MLEAF=0.500;MQ=46.73;MQRankSum=-1.337;QD=2.41;ReadPosRankSum=0.362;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:134,34:0.20:168
chr1	16975912	rs148656339	CCCTGTT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=26.829;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-1.317;QD=1.06;ReadPosRankSum=-0.025;SOR=4.758;set=HC	GT:AD:AF:DP	0/1:85,10:0.11:95
chr1	16975994	rs2261801	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:129,48:0.27:177
chr1	16976032	rs2483047	A	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=3.422;QD=1.63;ReadPosRankSum=1.541;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:235,47:0.17:282
chr1	16976193	rs61772256	C	T	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=66.810;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-13.324;QD=3.63;ReadPosRankSum=-0.995;SOR=2.562;set=HC	GT:AD:AF:DP	0/1:264,79:0.23:343
chr1	16976539	rs199931165	A	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:95,66:0.41:161
chr1	16976569	rs78288272	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:198,77:0.28:275
chr1	16976585	rs1135350	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=49.72;MQRankSum=-5.469;QD=2.86;ReadPosRankSum=-0.108;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:278,78:0.22:356
chr1	16976641	rs1057417	C	T	6644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=48.40;MQRankSum=-10.912;QD=9.59;ReadPosRankSum=-0.472;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:499,194:0.28:693
chr1	16976649	rs1057333	C	T	6727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.249;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-10.951;QD=9.31;ReadPosRankSum=0.059;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:518,205:0.28:723
chr1	16976679	rs1065528	G	A	3040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=2.025;QD=5.12;ReadPosRankSum=-0.594;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:412,182:0.31:594
chr1	16976681	rs3175284	G	T	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.39;MQRankSum=-11.359;QD=4.14;ReadPosRankSum=2.134;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:420,171:0.29:591
chr1	16976772	rs79425189	G	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.281;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=47.95;MQRankSum=-1.279;QD=2.19;ReadPosRankSum=-1.120;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:83,18:0.18:101
chr1	17017675	rs2743471	C	A	6602.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:348,328:0.49:676
chr1	17017717	rs12561804	C	T	2249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.998;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:295,84:0.22:379
chr1	17017734	rs12561805	C	T	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=6.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=-0.723;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:233,67:0.22:300
chr1	17022909	rs557582	C	G	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=1.351;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:176,63:0.26:239
chr1	17022952	rs557690	C	A	9398.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=25.61;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	17023110	rs11260887	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-2.644;QD=3.19;ReadPosRankSum=-0.769;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:133,38:0.22:171
chr1	17023143	rs559507	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:103,79:0.43:182
chr1	17023182	rs614461	C	G	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:61,124:0.67:185
chr1	17023209	rs112071224	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-0.074;QD=1.27;ReadPosRankSum=1.998;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:154,28:0.15:182
chr1	17023376	rs613579	C	T	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:195,215:0.52:410
chr1	17023403	rs10907267	G	A	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.843;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:290,85:0.23:375
chr1	17023483	rs563062	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr1	17023509	rs563142	T	C	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=5.061;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.061;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:48,44:0.48:92
chr1	17023509	.	TCC	CCA	688	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=2;MGOF=23;MMLQ=28;MQ=59.99;NF=10;NR=28;PP=688;QD=19.5123124964;SC=CCTTCCCAACTCCAGATTGGA;SbPval=0.34;Source=Platypus;TC=87;TCF=19;TCR=68;TR=38;WE=17023519;WS=17023499;set=Platypus	GT:AD:AF:DP	1/0:49,38:0.44:87
chr1	17023511	rs563144	C	A	2514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.969;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=29.24;ReadPosRankSum=0.769;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:17,69:0.80:86
chr1	17025992	rs12026928	G	A	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=1.374;QD=5.33;ReadPosRankSum=2.420;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:104,51:0.33:155
chr1	17026004	rs9661305	C	G	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=-2.784;QD=8.39;ReadPosRankSum=-0.128;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:99,77:0.44:176
chr1	17026043	.	G	GGCA	3995.73	.	AC=1;AF=0.500;AN=2;DP=240;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr1	17026087	rs678369	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:106,107:0.50:213
chr1	17026516	.	C	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.295;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr1	17026551	rs665763	G	C	442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-1.461;QD=9.22;ReadPosRankSum=0.333;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	17029462	rs11260891	A	G	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.522;QD=2.59;ReadPosRankSum=0.737;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:234,63:0.21:297
chr1	17029513	rs523936	C	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:71,83:0.54:154
chr1	17029542	.	A	G	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=2.45;ReadPosRankSum=1.105;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr1	17030325	rs601893	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	17030504	rs601031	T	A	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:217,116:0.35:333
chr1	17030515	rs201665864	G	A	4467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.662;QD=13.26;ReadPosRankSum=-0.332;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:217,120:0.36:337
chr1	17030518	rs200139772	CT	TG	4363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.416;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.895;QD=12.83;ReadPosRankSum=-0.165;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:220,120:0.35:340
chr1	17030590	rs590170	G	A	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:364,151:0.29:515
chr1	17030716	rs4661917	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:117,50:0.30:167
chr1	17030729	rs12029338	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.831;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:104,24:0.19:128
chr1	17033758	rs1736691	A	G	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:44,108:0.71:152
chr1	17033805	rs59259153	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-10.306;QD=4.30;ReadPosRankSum=-1.719;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:140,57:0.29:197
chr1	17033854	rs2476568	C	T	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:48,129:0.73:177
chr1	17034041	rs2743505	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	17034125	rs141324796	C	CAGCT	169.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	17034250	rs61773400	C	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	17034268	rs55732718	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	17034285	.	C	G	165	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=4;MGOF=6;MMLQ=23;MQ=60.0;NF=4;NR=1;PP=165;QD=39.9542425094;SC=CAGGCCCCGCCCACGGTCCTC;SbPval=0.83;Source=Platypus;TC=26;TCF=18;TCR=8;TR=5;WE=17034305;WS=17034275;set=Platypus	GT:AD:AF:DP	0/1:21,5:0.19:26
chr1	17034297	rs9728482	G	A	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	17034455	rs140689885	CGCGCGCGT	C	825.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-2.850;QD=5.62;ReadPosRankSum=-0.570;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:118,29:0.20:147
chr1	17044511	rs2773185	T	C	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.594;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr1	17044589	rs944147	G	A	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-0.968;QD=12.89;ReadPosRankSum=0.352;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:48,78:0.62:126
chr1	17044662	rs13374664	G	C	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=1.853;QD=3.16;ReadPosRankSum=-0.107;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:83,26:0.24:109
chr1	17046361	rs3856291	A	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.905;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.398;SOR=1.264;set=HC	GT:AD:AF:DP	0/1:63,20:0.24:83
chr1	17046439	rs9728204	C	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.639;QD=3.81;ReadPosRankSum=-0.515;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:182,67:0.27:249
chr1	17046456	rs3856292	T	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.554;QD=3.25;ReadPosRankSum=0.396;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:218,65:0.23:283
chr1	17046549	rs1755332	G	A	5169.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:72,228:0.76:300
chr1	17046595	rs3856293	T	C	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.624;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:234,60:0.20:294
chr1	17046613	rs3856294	C	T	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:160,125:0.44:285
chr1	17046698	rs3982089	C	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.307;QD=3.37;ReadPosRankSum=-1.889;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:105,35:0.25:140
chr1	17083671	rs1057420	C	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=53.10;MQRankSum=0.760;QD=2.39;ReadPosRankSum=1.565;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr1	17083685	rs3197973	C	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.336;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.17;MQRankSum=-0.281;QD=5.17;ReadPosRankSum=-0.434;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	17083778	rs28455793	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.25;MQRankSum=-0.383;QD=4.84;ReadPosRankSum=-0.687;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	17083807	rs9286084	T	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.51;QD=26.68;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	17083872	rs61635893	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=42.90;MQRankSum=-1.276;QD=1.26;ReadPosRankSum=0.406;SOR=2.621;set=HC	GT:AD:AF:DP	0/1:22,4:0.15:26
chr1	17083984	rs71269410	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=45.97;MQRankSum=-1.330;QD=1.02;ReadPosRankSum=0.043;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:90,14:0.13:104
chr1	17084006	rs2446544	C	T	3150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-4.490;QD=13.13;ReadPosRankSum=-0.566;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:106,134:0.56:240
chr1	17084510	rs61769731	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=52.55;MQRankSum=-2.517;QD=0.74;ReadPosRankSum=1.264;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:263,41:0.13:304
chr1	17084536	rs142741624	TGGAACA	T	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=8.202;MLEAC=1;MLEAF=0.500;MQ=49.39;MQRankSum=-2.415;QD=2.95;ReadPosRankSum=-0.067;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:184,29:0.14:213
chr1	17084755	rs140682808	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr1	17084968	rs2761533	G	C	2729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=2.602;QD=5.43;ReadPosRankSum=0.155;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:341,162:0.32:503
chr1	17085165	rs2490828	G	C	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.43;QD=29.59;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	17085412	rs872964	C	T	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:352,167:0.32:519
chr1	17085427	rs2002186	T	C	7888.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:296,245:0.45:541
chr1	17085502	rs2329006	T	C	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:187,122:0.39:309
chr1	17085542	rs2261754	G	A	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=51.33;MQRankSum=-4.340;QD=4.48;ReadPosRankSum=-0.327;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:162,56:0.26:218
chr1	17085564	rs3851921	A	G	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:130,54:0.29:184
chr1	17085671	rs3863806	C	G	2263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=51.19;MQRankSum=-9.731;QD=15.83;ReadPosRankSum=0.933;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:80,63:0.44:143
chr1	17085677	rs3863805	G	A	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=51.27;MQRankSum=-7.890;QD=7.30;ReadPosRankSum=2.414;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:81,55:0.40:136
chr1	17085712	rs3863803	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,52:0.41:127
chr1	17085834	rs2005622	G	T	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:71,163:0.70:234
chr1	17085908	rs1805293	C	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.365;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-11.924;QD=1.59;ReadPosRankSum=-0.415;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:342,70:0.17:412
chr1	17085995	.	G	GC	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=7.636;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-0.441;QD=3.07;ReadPosRankSum=1.605;SOR=0.104;set=HC	GT:AD:AF:DP	0/1:105,29:0.22:134
chr1	17086052	rs1057286	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.92;QD=24.60;SOR=3.750;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	17086870	rs201604637	T	C	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.281;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=27.727;MLEAC=1;MLEAF=0.500;MQ=52.57;MQRankSum=-7.390;QD=1.98;ReadPosRankSum=-1.988;SOR=3.155;set=HC	GT:AD:AF:DP	0/1:107,21:0.16:128
chr1	17087244	rs58502471	AC	A	1651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=56.02;MQRankSum=2.838;QD=4.76;ReadPosRankSum=1.038;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:260,87:0.25:347
chr1	17087292	rs2179161	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=21.067;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-18.679;QD=0.22;ReadPosRankSum=-2.291;SOR=2.372;set=HC	GT:AD:AF:DP	0/1:437,60:0.12:497
chr1	17087299	rs2179162	T	C	1919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.480;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=13.996;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=-18.278;QD=3.76;ReadPosRankSum=-2.507;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:436,74:0.15:510
chr1	17087305	rs12046578	G	C	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.742;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=11.044;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-19.406;QD=3.88;ReadPosRankSum=-2.118;SOR=1.631;set=HC	GT:AD:AF:DP	0/1:432,83:0.16:515
chr1	17087365	rs2446556	C	G	9838.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:100,414:0.81:514
chr1	17087465	rs11260924	G	A	4398.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:280,216:0.44:496
chr1	17087541	rs113982165	GGTGCT	G	6231.73	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:258,169:0.40:427
chr1	17087582	rs10907280	G	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:216,134:0.38:350
chr1	17087593	rs12145944	C	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=6.184;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-9.642;QD=0.50;ReadPosRankSum=-0.045;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:276,41:0.13:317
chr1	17091129	rs61769748	G	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	17197563	rs7556482	G	T	4659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.188;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=6.462;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-20.083;QD=8.94;ReadPosRankSum=-0.397;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:352,169:0.32:521
chr1	17197571	rs76372883	G	A	3585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.280;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=11.237;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=-14.488;QD=6.54;ReadPosRankSum=-4.480;SOR=1.630;set=HC	GT:AD:AF:DP	0/1:437,111:0.20:548
chr1	17197595	rs201521253	A	C	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:458,150:0.25:608
chr1	17197609	rs150993810	T	C	5749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=8.226;MLEAC=1;MLEAF=0.500;MQ=54.40;MQRankSum=-16.159;QD=9.43;ReadPosRankSum=4.456;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:444,166:0.27:610
chr1	17197615	rs146936960	C	A	6142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=8.028;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-15.825;QD=10.14;ReadPosRankSum=4.656;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:430,176:0.29:606
chr1	17197619	rs113661539	A	G	6187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=9.157;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-15.693;QD=10.28;ReadPosRankSum=5.010;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:421,181:0.30:602
chr1	17197685	rs7513766	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-3.128;QD=0.07;ReadPosRankSum=3.279;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:362,49:0.12:411
chr1	17197690	rs72642967	T	G	6445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.381;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=5.177;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-13.850;QD=16.74;ReadPosRankSum=-1.895;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:210,175:0.45:385
chr1	17197694	rs72642969	G	A	6337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.280;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=4.671;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-13.746;QD=17.22;ReadPosRankSum=-1.813;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:200,168:0.46:368
chr1	17197710	rs114564385	G	C	4870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.075;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-11.919;QD=17.33;ReadPosRankSum=0.342;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:157,124:0.44:281
chr1	17197715	rs202012907	G	A	4549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=-11.501;QD=17.37;ReadPosRankSum=1.676;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:151,111:0.42:262
chr1	17197724	rs3897252	C	G	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.858;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-0.323;QD=1.37;ReadPosRankSum=-0.221;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:189,37:0.16:226
chr1	17197725	rs75030124	C	G	1828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-8.803;QD=8.27;ReadPosRankSum=0.721;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:156,65:0.29:221
chr1	17197758	rs143100028	C	G	2416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.115;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-8.197;QD=17.77;ReadPosRankSum=0.386;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:69,67:0.49:136
chr1	17197764	.	G	A	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.782;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=-6.509;QD=13.60;ReadPosRankSum=0.290;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:62,58:0.48:120
chr1	17197771	rs139655267	G	A	2064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.811;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=-6.942;QD=19.12;ReadPosRankSum=-0.010;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:54,54:0.50:108
chr1	17197777	rs149102001	T	G	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-6.244;QD=20.83;ReadPosRankSum=-0.676;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:49,51:0.51:100
chr1	17197779	rs138448635	G	A	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.133;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=2.807;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-6.159;QD=20.27;ReadPosRankSum=-0.663;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:48,49:0.51:97
chr1	17198381	rs199674141	T	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=28.65;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	17248500	rs6683035	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr1	17248532	rs6586566	A	G	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	17248618	rs193268849	G	A	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:107,63:0.37:170
chr1	17249128	rs74056000	C	T	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=2.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.257;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:435,148:0.25:583
chr1	17249138	rs56191217	C	A	5164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.139;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:504,169:0.25:673
chr1	17249395	rs6586567	A	G	8705.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:239,392:0.62:631
chr1	17250762	rs58609892	G	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	17250836	rs57174186	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:84,30:0.26:114
chr1	17250991	rs60275838	T	C	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-1.663;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:134,86:0.39:220
chr1	17251055	rs9435703	C	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:34,74:0.69:108
chr1	17251056	rs59784123	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:70,34:0.33:104
chr1	17256313	rs9435710	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.97;ReadPosRankSum=1.611;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	17262942	rs7529769	G	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=6.829;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.582;QD=10.30;ReadPosRankSum=0.846;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr1	17262944	rs7521985	A	G	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=8.430;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-2.648;QD=10.97;ReadPosRankSum=0.047;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr1	17262953	rs7521989	A	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=9.055;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-3.264;QD=10.02;ReadPosRankSum=-0.422;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:53,26:0.33:79
chr1	17263462	rs78906531	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	17264863	rs4275496	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.60;ReadPosRankSum=-1.720;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	17264920	rs4463721	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	17264939	rs4558023	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	17265327	rs4269813	A	G	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:279,134:0.32:413
chr1	17265366	rs4269812	C	G	3274.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:362,190:0.34:552
chr1	17265560	rs9435793	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr1	17266514	rs141271666	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	17266608	rs57581056	TG	T	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	17266616	rs56247222	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	17267302	rs6586577	A	G	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.205;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-2.149;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:127,41:0.24:168
chr1	17267496	rs6586578	C	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:94,55:0.37:149
chr1	17270751	rs12025984	G	A	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:25,92:0.79:117
chr1	17273493	rs7537563	A	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr1	17275054	rs6698564	G	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	17280735	rs140178093	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	17281003	rs2076606	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	17295679	rs4920574	T	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	17297289	rs9435656	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	17299013	rs201543544	CA	C	63.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.879;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:42,9:0.18:51
chr1	17299014	rs6661019	A	C	995.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr1	17301448	rs2235933	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	17301672	rs761423	T	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,51:0.46:110
chr1	17301780	rs761422	A	G	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=3.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-1.001;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:65,57:0.47:122
chr1	17301900	rs3830850	AGACAGAACCTGGCACGGGAGCCCG	A	599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.09;MQRankSum=3.719;QD=14.63;ReadPosRankSum=-1.881;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	17303589	rs2235932	C	T	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:105,109:0.51:214
chr1	17303792	rs4920588	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	17312743	rs3170740	C	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr1	17313157	rs2076605	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr1	17313343	rs9435659	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr1	17313454	rs7531163	G	A	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.41;ReadPosRankSum=-0.961;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:37,75:0.67:112
chr1	17313654	rs761421	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:90,113:0.56:203
chr1	17314702	rs3738815	C	T	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:193,146:0.43:339
chr1	17314942	rs9435662	G	A	2839.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:115,133:0.54:248
chr1	17319011	rs2076603	G	A	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:160,153:0.49:313
chr1	17323449	rs9435736	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	17331676	rs3738814	A	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr1	17359676	rs1022580	C	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	17371152	rs12073028	T	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr1	17380497	rs2746462	G	T	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	17395480	rs2076599	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr1	17395521	rs2076598	G	A	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:88,112:0.56:200
chr1	17396498	rs2076596	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	17396703	rs2076595	T	C	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:126,147:0.54:273
chr1	17398066	rs875219	G	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=-1.913;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	17398069	rs875218	T	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=-2.367;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	17401283	rs3818041	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	17402116	rs3818035	G	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:93,59:0.39:152
chr1	17402135	rs3818034	T	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:126,77:0.38:203
chr1	17402159	rs3818033	G	A	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:156,105:0.40:261
chr1	17402255	rs3818032	C	T	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:213,184:0.46:397
chr1	17402347	rs2647205	C	T	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	17402418	rs3818031	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr1	17402420	rs2647204	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr1	17405809	rs2057096	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:100,85:0.46:185
chr1	17405916	rs2057095	C	T	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.011;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:90,61:0.40:151
chr1	17405949	rs2057094	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,45:0.41:109
chr1	17406015	rs2057093	C	T	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	17406045	rs2057092	C	T	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	17409017	rs2076617	G	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	17409241	rs2235925	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr1	17410364	rs1883913	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	17413121	rs2076615	A	C	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:110,132:0.55:242
chr1	17418883	rs2647184	A	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	17419024	rs11203297	G	A	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	17431618	rs11203300	A	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	17431681	rs2647172	C	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr1	17531582	rs2293910	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	17550185	rs144910180	G	A	1196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-0.073;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:89,65:0.42:154
chr1	17550225	rs3003481	T	C	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	17551034	rs2293915	A	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	17552573	rs150923523	A	G	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:56,96:0.63:152
chr1	17552611	rs370394605	C	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.471;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.232;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:92,45:0.33:137
chr1	17555316	rs2977233	C	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr1	17555508	rs2977234	G	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	17597423	rs144080386	C	T	2431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.542;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.861;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:129,126:0.49:255
chr1	17600954	rs192878003	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	17604437	rs72646786	C	T	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	17683041	rs1635567	T	C	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	17683157	rs1635566	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	17685174	rs2428735	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	17686050	rs1635563	C	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	17689954	rs2477150	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr1	17698725	rs1204873	C	T	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,61:0.55:110
chr1	17698961	rs1204872	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr1	17699463	rs1204869	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr1	17699509	rs2308230	G	GGTGA	3235.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr1	17699539	rs1204868	C	T	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:99,111:0.53:210
chr1	17706297	rs1204900	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	17707739	rs1204898	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr1	17707798	rs10788668	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	17708627	rs55754476	G	A	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:52,52:0.50:104
chr1	17715081	rs2526842	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr1	17715135	rs2526841	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	17715475	rs2800688	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	17718671	rs10709483	AG	A	4193.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	17718750	rs12737852	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.734;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=1.059;QD=12.34;ReadPosRankSum=-0.822;SOR=0.241;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr1	17718756	rs74058825	G	C	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=-0.754;QD=14.57;ReadPosRankSum=-0.854;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr1	17720439	rs6695849	T	C	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.702;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr1	17720615	rs10458537	A	C	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:66,84:0.56:150
chr1	17720686	rs34075690	AG	A	1626.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr1	17721695	rs35197313	GT	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.04;ReadPosRankSum=-2.453;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	17721707	rs12239645	T	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=1.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=-0.124;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	17725154	.	CCCCCCCCA	C	274.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	17725358	rs2244936	C	G	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:140,116:0.45:256
chr1	17738570	rs71014950	AC	A	3195.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:130,114:0.47:244
chr1	17739820	rs1075535	T	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr1	17740357	rs2003871	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=1.341;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	17914846	rs1193343	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	17929972	rs75764220	G	T	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=-0.710;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:83,80:0.49:163
chr1	17929980	rs1193338	C	G	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-0.703;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:83,90:0.52:173
chr1	17929990	rs111461054	A	C	3651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-1.650;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:96,108:0.53:204
chr1	17934319	rs114551094	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr1	17948305	rs139721173	G	GGGCCACAGCAGGTACT	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	17964288	rs7521850	C	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:97,91:0.48:188
chr1	17965194	rs2297916	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr1	17981184	rs35255680	A	C	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.436;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:127,101:0.44:228
chr1	17982559	rs867984	G	A	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-0.294;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:61,59:0.49:120
chr1	17991052	rs6695710	T	C	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	17991196	rs11203432	A	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr1	18016162	rs74061959	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	18016402	rs13376020	A	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr1	18016441	rs13376112	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,36:0.40:91
chr1	18016491	rs13375581	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	18017522	rs871087	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr1	18017558	rs871088	A	G	3355.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:204,178:0.47:382
chr1	18017704	rs871089	C	T	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:88,100:0.53:188
chr1	18021406	rs905389	T	C	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:144,101:0.41:245
chr1	18023290	rs2270979	C	T	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=1.022;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr1	18023365	rs2270978	C	T	1816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.691;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:96,93:0.49:189
chr1	18023509	rs2270977	T	C	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:107,83:0.44:190
chr1	18023690	rs2270976	A	G	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:121,125:0.51:246
chr1	18023877	rs11589634	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr1	18023997	rs3835471	G	GC	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	18149510	rs694214	G	T	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	18149566	rs2296035	C	A	11506.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr1	18434518	rs9660391	G	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	18554345	rs61762155	T	C	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:190,145:0.43:335
chr1	18554356	rs3738087	C	T	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:211,167:0.44:378
chr1	18691614	rs12079178	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr1	18691665	rs41300138	G	T	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:69,61:0.47:130
chr1	18702988	rs10796450	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	18703544	rs10465915	G	A	3159.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:160,153:0.49:313
chr1	18704862	rs1043459	A	G	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:93,78:0.46:171
chr1	18807897	rs2992755	C	G	9162.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	18807953	rs11261022	C	A	10589.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	18808292	rs2992753	C	A	11385.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr1	18808465	rs3007718	T	A	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	18808526	rs2992752	A	C	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr1	18809896	rs2992745	A	T	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	18810344	rs2992740	G	T	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	19071179	rs140528968	GATAA	G	740.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.15;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19071182	.	AAATGGATGG	GGATAAATGG,GGATGGATAA	713	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.29;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=7,7;NR=1,0;PP=713,636;QD=98.3084843578;SC=ATGGATGGATAAATGGATGGA;SbPval=0.66;Source=Platypus;TC=31;TCF=27;TCR=4;TR=8,7;WE=19071199;WS=19071169;set=Platypus	GT:AF:DP	0/1:0.26:31
chr1	19071187	.	G	GATAA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=3.324;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	19071191	.	G	GATAA	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=0.859;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	19175846	rs28374389	T	C	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr1	19181015	rs34447754	G	C	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:92,112:0.55:204
chr1	19181082	rs28470550	A	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:130,150:0.54:280
chr1	19181393	rs35874116	T	C	4162.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:253,216:0.46:469
chr1	19184077	rs68081213	A	G	3565.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:163,175:0.52:338
chr1	19184176	rs72953138	G	A	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:66,69:0.51:135
chr1	19186129	rs9701796	G	C	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	19186260	rs9700646	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	19186320	rs9701803	G	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	19199487	rs35255325	A	G	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	19200895	rs35657817	C	T	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	19201184	rs6665917	G	C	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	19201956	rs2230708	A	G	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	19202770	rs7550822	T	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	19202896	rs2230707	G	A	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	19202917	rs7550938	T	C	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	19202926	rs2230706	T	C	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	19203997	rs2230705	C	G	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	19204154	rs6426813	G	A	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	19204173	rs6426814	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	19208145	rs112548638	G	GGGTTGCCT	5257.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	19208944	rs28566028	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	19209543	rs6426611	A	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	19215834	rs941495	T	C	7469.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	19216428	rs4592275	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr1	19237107	rs2024724	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	19238001	.	T	TTTTATTTA	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=0.889;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	19243589	rs3748586	A	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr1	19282944	rs4912132	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.024;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr1	19282981	rs1886768	A	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	19401405	rs2281748	G	A	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:200,138:0.41:338
chr1	19408294	rs67232976	G	GC	7683.73	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:273,290:0.52:563
chr1	19408380	rs12164540	T	C	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:95,107:0.53:202
chr1	19411129	rs1043905	A	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	19412464	rs2274009	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19413261	rs12584	T	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	19413420	rs2274008	T	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	19415304	rs1043899	C	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	19420392	rs1106839	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	19426199	rs2236377	G	A	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	19433449	rs6426677	A	G	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	19437185	rs10916957	G	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	19440107	rs9661719	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19441594	rs56030256	C	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	19444552	rs17392444	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	19446587	rs6693149	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	19447819	rs35802543	T	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:61,44:0.42:105
chr1	19447843	rs1044010	C	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	19448326	rs6681662	C	T	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	19448608	rs7535738	C	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	19450938	rs6681943	G	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr1	19474975	rs2296108	T	G	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:60,56:0.48:116
chr1	19483209	rs10799710	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	19486839	rs946419	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	19487656	rs3748759	T	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr1	19491514	rs12133185	G	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr1	19491857	rs3748757	T	C	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	19499560	rs16862578	T	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr1	19499835	rs951908	G	C	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	19499873	rs952789	G	T	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr1	19499954	rs952790	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:100,82:0.45:182
chr1	19500729	rs6694521	G	A	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	19510394	rs3762396	A	G	10529.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr1	19513570	rs59833909	TTA	T	963.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.309;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.571;QD=25.36;ReadPosRankSum=-0.265;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:4,34:0.89:38
chr1	19518659	rs11588032	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr1	19519782	rs10799734	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr1	19526363	rs12122656	A	G	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	19554099	rs7515397	T	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19557281	rs12128595	G	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	19557713	rs2275403	G	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	19558018	rs55748756	C	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr1	19559729	rs16862625	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	19565338	rs709682	C	T	3133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.22;ReadPosRankSum=0.624;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:87,85:0.49:172
chr1	19565344	rs709683	C	G	3109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.658;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=0.280;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:88,83:0.49:171
chr1	19566881	rs12084825	C	T	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:178,154:0.46:332
chr1	19568722	rs710866	G	C	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr1	19568972	rs710865	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr1	19570426	rs2294944	C	G	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr1	19578053	rs6680255	C	G	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:108,119:0.52:227
chr1	19578404	rs41264060	G	A	1836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.548;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:95,89:0.48:184
chr1	19581226	rs735026	G	A	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	19581442	rs112100063	G	GA,GAA	1389.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.000;QD=22.42;ReadPosRankSum=-0.944;SOR=0.952;set=HC	GT:AD:AF:DP	1/2:5,13,44:0.21,0.71:62
chr1	19581467	rs1774081	C	T	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	19582338	rs6694099	C	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr1	19582563	rs1557133	G	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	19583400	rs1774075	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	19583684	rs1774074	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	19583725	rs1738017	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	19584004	rs1042380	G	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	19584578	rs12121472	T	C	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:78,104:0.57:182
chr1	19585207	rs2294939	G	A	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:70,72:0.51:142
chr1	19593748	rs116049134	A	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:76,55:0.42:131
chr1	19595194	rs75616155	A	G	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:199,145:0.42:344
chr1	19600386	rs112053480	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr1	19600538	rs144376466	C	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	19609254	rs1738025	T	C	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:156,187:0.55:343
chr1	19609522	rs140599506	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,58:0.46:125
chr1	19611241	rs1738023	T	C	6434.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:312,299:0.49:611
chr1	19632757	rs2231204	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr1	19635011	rs1043657	C	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr1	19638284	rs116824369	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	19638309	rs2227295	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	19638557	rs148182255	G	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	19644218	rs12140547	G	A	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:116,109:0.48:225
chr1	19652872	rs77915465	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr1	19652874	rs41264079	G	A	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:51,61:0.54:112
chr1	19653148	rs61764959	G	A	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:112,113:0.50:225
chr1	19654019	.	A	ATCCCTCCC	137.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	19654023	.	AT	CT	653	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=19;MMLQ=25;MQ=60.44;NF=0,0;NR=13,12;PP=653,164;QD=50.9230769231;SC=CCATCCATCCATCCCTCCCTC;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=13,12;WE=19654031;WS=19654009;set=Platypus	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	19654023	.	AT	ATCCCTCCCTCCCT	653	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=19;MMLQ=25;MQ=60.44;NF=0,0;NR=13,12;PP=653,164;QD=50.9230769231;SC=CCATCCATCCATCCCTCCCTC;SbPval=1.0;Source=Platypus;TC=24;TCF=0;TCR=24;TR=13,12;WE=19654031;WS=19654009;set=Platypus	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	19654023	rs144383076	A	C,ATCCCTCCCTCCC	686.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.90;QD=45.78;SOR=5.549;set=HC	GT:AD:AF:DP	1/2:0,7,8:0.47,0.53:15
chr1	19654112	rs7543391	G	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:84,70:0.45:154
chr1	19654141	rs7552150	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:109,97:0.47:206
chr1	19669510	rs61766681	G	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	19683301	rs169957	G	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	19683355	rs112399355	C	CT	132.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	19684103	rs41264087	T	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr1	19775246	rs10442634	C	T	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:158,96:0.38:254
chr1	19775492	rs10442635	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	19927553	rs860847	C	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr1	19934724	rs61740467	C	T	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:124,96:0.44:220
chr1	19934900	rs61740466	G	A	3536.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:118,160:0.58:278
chr1	19948507	rs728611	A	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.670;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=-0.025;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr1	19950062	rs1737428	T	C	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.013;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr1	19972330	rs79540600	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:82,92:0.53:174
chr1	19992513	rs1805054	C	T	6269.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:259,295:0.53:554
chr1	20005346	rs8192532	A	C	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr1	20009737	rs10917514	G	A	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:98,92:0.48:190
chr1	20020993	rs4370779	A	G	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	20027404	rs10799834	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:100,144:0.59:244
chr1	20027423	rs10737480	T	G	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:88,115:0.57:203
chr1	20066485	rs6426824	G	A	3700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=5.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.71;ReadPosRankSum=2.031;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:109,100:0.48:209
chr1	20066490	rs6426825	T	C	3724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=6.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.99;ReadPosRankSum=1.989;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:110,97:0.47:207
chr1	20067186	rs12065466	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr1	20073146	rs36067693	G	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr1	20097941	rs10917536	G	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	20107018	rs12035882	G	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	20304785	rs2236772	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	20304962	rs2236771	C	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=1.497;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr1	20305065	rs10732279	C	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	20395587	rs2148911	G	A	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:156,136:0.47:292
chr1	20442054	rs584367	T	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,99:0.52:192
chr1	20446170	rs11298078	GT	G	2195.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=3.535;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	20469854	rs12745152	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr1	20490518	rs6426616	T	C	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=0.018;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:90,76:0.46:166
chr1	20499168	rs2301475	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr1	20501362	rs6692902	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	20501582	rs12139100	G	A	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.442;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:54,45:0.45:99
chr1	20517965	rs41307769	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr1	20637043	rs12726937	C	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:79,65:0.45:144
chr1	20637374	rs10916761	T	C	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:95,84:0.47:179
chr1	20643944	rs4654851	G	C	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr1	20645086	rs35480773	T	A	6445.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:308,311:0.50:619
chr1	20649814	rs4655194	T	C	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:136,134:0.50:270
chr1	20656824	rs2072752	A	G	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:95,91:0.49:186
chr1	20657352	rs2072753	T	C	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:98,147:0.60:245
chr1	20662938	rs10916769	A	G	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=-0.006;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:60,68:0.53:128
chr1	20668864	rs368745611	TCTC	T	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.724;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:46,7:0.13:53
chr1	20671833	rs10799629	C	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr1	20671961	rs11582960	G	A	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=1.561;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:68,67:0.50:135
chr1	20672101	rs4655200	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr1	20676932	rs179471	T	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	20680718	rs2072751	G	A	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.155;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:58,54:0.48:112
chr1	20680760	rs230180	A	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.469;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	20827216	rs595980	C	T	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:78,81:0.51:159
chr1	20829560	rs2641114	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	20829808	rs60519890	TA	T	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	20915589	rs3215400	TC	T	4756.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	20915701	rs2072671	A	C	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:189,124:0.40:313
chr1	20940258	rs488991	T	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	20940463	rs3738130	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	20944889	rs77158575	G	A	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	20944909	rs61781969	G	A	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	20944922	rs61781970	C	T	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	20945055	rs1048977	C	T	6172.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr1	20964328	rs2298298	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr1	20972048	rs3131713	G	A	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:42,43:0.51:85
chr1	20974836	rs148894314	GC	G	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	20977000	rs1043424	A	C	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr1	20977221	rs686658	A	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr1	20978832	rs6893	T	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr1	20979573	rs36110575	C	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.188;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=0.151;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr1	20979580	rs12410193	T	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=1.800;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	20980085	rs35610874	AC	A	1904.73	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:133,84:0.39:217
chr1	20980922	rs2070658	G	A	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.341;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.84;ReadPosRankSum=-0.085;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:67,72:0.52:139
chr1	20981806	rs592851	G	A	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	20982151	rs3738140	G	A	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=1.841;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:62,68:0.52:130
chr1	20982631	rs4704	G	A	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,125:0.50:251
chr1	20987873	rs537816	G	C	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	20992819	rs631357	G	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:64,56:0.47:120
chr1	20992887	rs61778493	C	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	21016906	.	G	T	252	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=5;HapScore=2;MGOF=1;MMLQ=24;MQ=59.6;NF=5;NR=13;PP=252;QD=15.9317340304;SC=ATTCCTTTTTGGTTATTCAAA;SbPval=0.81;Source=Platypus;TC=36;TCF=13;TCR=23;TR=18;WE=21016914;WS=21016896;set=Platypus	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	21030902	rs900039	G	T	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr1	21040079	rs10799661	C	A	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr1	21040151	rs10916851	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr1	21042300	rs554111	C	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	21043913	rs604659	T	C	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:77,77:0.50:154
chr1	21043926	rs604645	T	C	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:87,99:0.53:186
chr1	21044161	rs601329	A	G	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:136,104:0.43:240
chr1	21044219	rs601392	A	C	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	21050958	rs592060	C	T	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr1	21091861	rs1985278	G	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-1.123;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr1	21143762	rs35569463	T	A	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	21143770	rs376814165	TA	T	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.78;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	21143782	rs76848587	A	AAT	1097.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	21167404	rs2230573	A	G	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	21175855	rs7525082	C	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	21179969	rs7542882	G	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	21180181	rs2305463	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	21180250	rs7543140	G	A	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	21181595	rs1463273	A	G	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr1	21188703	rs10916885	A	T	6408.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:39,309:0.89:348
chr1	21324035	rs41265975	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr1	21327637	rs1395508	C	T	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	21377314	rs6426663	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	21494635	rs74580828	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-1.416;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr1	21502724	.	T	TGCCGCC	1110.73	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr1	21548068	rs2076281	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	21554319	rs6426676	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	21554573	rs3026901	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr1	21571601	rs12562197	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr1	21573603	rs212513	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr1	21573722	rs2229450	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.750;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:44,26:0.37:70
chr1	21582425	rs212522	C	T	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	21625145	rs10916958	T	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr1	21671943	rs2072654	T	G	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	21751142	rs150916531	A	G	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.789;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=7.719;MLEAC=1;MLEAF=0.500;MQ=46.77;MQRankSum=-7.343;QD=15.89;ReadPosRankSum=0.500;SOR=1.808;set=HC	GT:AD:AF:DP	0/1:28,47:0.63:75
chr1	21751214	rs72476501	G	A	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:119,208:0.64:327
chr1	21751325	rs140609058	G	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:122,59:0.33:181
chr1	21752682	rs71512992	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=47.98;MQRankSum=-4.653;QD=1.71;ReadPosRankSum=0.471;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr1	21752766	rs144829292	A	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.03;MQRankSum=-6.769;QD=2.26;ReadPosRankSum=0.601;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:74,21:0.22:95
chr1	21752782	rs140348908	T	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.97;MQRankSum=-6.512;QD=2.56;ReadPosRankSum=0.344;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr1	21752830	rs139145324	C	T	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=45.91;MQRankSum=-3.706;QD=3.78;ReadPosRankSum=-0.421;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr1	21753562	rs146549873	A	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.65;QD=23.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	21754993	rs187509109	A	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.634;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=0.238;QD=8.56;ReadPosRankSum=0.173;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	21754996	rs12024079	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.99;QD=34.93;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	21755055	rs12024104	C	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.49;QD=31.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	21755135	rs41302024	T	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=10.414;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=17.65;ReadPosRankSum=0.718;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	21755288	.	A	ACCGCCGCGACT	905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=7.664;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-1.414;QD=15.62;ReadPosRankSum=-0.684;SOR=1.754;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr1	21755347	rs41310392	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr1	21755453	rs3856177	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.11;QD=33.63;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	21755539	rs3855556	C	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.54;QD=31.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	21755747	rs41310412	A	G	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=0.041;QD=8.40;ReadPosRankSum=-1.758;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:82,66:0.45:148
chr1	21755756	rs56343055	G	C	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.21;QD=34.09;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	21755867	rs7522332	A	G	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	21755906	rs3738922	G	A	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	21756008	rs3894725	G	T	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	21756029	rs369179740	A	T	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	21756069	rs7532750	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.93;QD=24.71;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	21795388	rs1827293	A	G	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:93,83:0.47:176
chr1	21799489	rs1971327	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	21799823	rs1971328	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr1	21800185	rs7520015	T	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr1	21801346	rs7531217	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr1	21804815	rs7535654	T	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	21805730	rs2316504	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	21808159	rs71512991	G	A	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-4.960;QD=3.34;ReadPosRankSum=1.255;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:213,70:0.25:283
chr1	21808207	rs146564096	A	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=47.32;MQRankSum=-6.627;QD=2.16;ReadPosRankSum=0.254;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:145,36:0.20:181
chr1	21808223	rs145079058	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.16;MQRankSum=-6.422;QD=2.87;ReadPosRankSum=-2.299;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr1	21887290	rs1767430	C	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr1	21889635	rs1780316	T	C	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:2,338:0.99:340
chr1	21890464	rs1767428	A	G	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.94;SOR=4.431;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	21896767	rs1256328	C	T	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:179,175:0.49:354
chr1	21900420	rs2275370	A	G	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr1	21900459	rs35488260	A	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	21925077	rs61775975	C	T	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	21925108	rs2794278	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	21926187	rs1767445	C	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	21928344	rs2275366	C	G	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	21929260	rs829368	A	G	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	21929456	rs3215988	GC	G	2424.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	21930542	rs3767111	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	21932530	rs1767443	C	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	21932625	rs2275365	G	A	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.316;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:75,66:0.47:141
chr1	21934667	rs829371	G	A	2582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.622;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:138,132:0.49:270
chr1	21935433	rs861212	G	T	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.290;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr1	21935492	rs61775976	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr1	21935884	rs34097078	GA	G	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:6,60:0.91:66
chr1	21938375	rs2275364	T	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr1	21939493	rs3767113	G	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr1	21939741	rs1256282	G	C	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:80,42:0.34:122
chr1	21940555	rs2275363	C	T	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-1.832;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:66,88:0.57:154
chr1	21943820	rs2275360	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr1	21944045	rs748489	C	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	21946415	rs1681255	G	A	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	21948936	rs829415	G	C	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	21953287	rs7354914	G	A	3676.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:154,172:0.53:326
chr1	21953304	rs1531829	G	A	11001.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr1	21953436	rs829412	A	G	13858.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr1	21961091	rs829380	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	21961338	rs12045185	G	A	3627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.190;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:211,188:0.47:399
chr1	21961339	rs10799706	A	T	13610.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.11;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	21978465	rs181939530	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	22013561	rs829420	C	A	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	22013771	rs10493008	G	A	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.893;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:52,58:0.53:110
chr1	22016678	rs11422483	T	TA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.48;ReadPosRankSum=0.987;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	22027858	rs35780642	C	CA	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.870;QD=7.26;ReadPosRankSum=0.185;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr1	22030189	rs829372	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	22032472	rs11426922	A	AT	738.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	22032570	rs333173	T	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:81,61:0.43:142
chr1	22050649	rs2275668	C	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,51:0.48:106
chr1	22063149	rs10753517	G	A	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr1	22082923	rs10458384	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	22082967	rs35545280	CA	C	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.918;QD=8.40;ReadPosRankSum=-0.965;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr1	22084145	rs17458515	T	C	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:106,108:0.50:214
chr1	22109370	rs10917042	G	A	2773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=1.227;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:145,141:0.49:286
chr1	22139141	rs34297508	C	T	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.056;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:46,59:0.56:105
chr1	22141206	rs10917051	A	C	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr1	22149935	rs897467	T	C	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.327;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:124,104:0.46:228
chr1	22150257	rs3736357	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr1	22156393	.	C	A	1532.77	.	AC=1;AF=0.500;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	0/1:132,80:0.38:212
chr1	22157689	rs3736355	G	A	4547.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:194,223:0.53:417
chr1	22158363	rs4654771	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	22160148	rs7547731	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr1	22161635	rs11338283	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=8.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.445;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	22168216	rs7556412	C	T	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:33,36:0.52:69
chr1	22168968	rs66533518	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr1	22169325	rs41266007	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=6.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=1.774;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:114,100:0.47:214
chr1	22174600	rs3767138	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:81,67:0.45:148
chr1	22177119	rs61777200	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	22179673	rs12049614	T	C	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr1	22180548	rs12117402	T	C	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:205,196:0.49:401
chr1	22183471	rs12024579	A	C	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:68,64:0.48:132
chr1	22183739	rs2305562	A	G	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:250,212:0.46:462
chr1	22186234	rs10917056	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	22191454	rs897471	G	A	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	22199081	rs2501266	A	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	22199245	rs2229482	C	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:65,56:0.46:121
chr1	22199821	rs2454290	G	A	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	22200067	rs2247741	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr1	22200082	rs2445136	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	22200835	rs2445135	C	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	22201331	rs2290494	C	T	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:89,96:0.52:185
chr1	22202109	rs2501265	C	T	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	22203259	rs2454295	A	G	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr1	22204630	rs7513608	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	22205408	rs2454294	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	22205466	rs2454293	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	22206649	rs989994	T	C	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	22206942	rs1874793	G	A	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	22207235	rs1874792	T	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	22207804	rs139046040	ACCCAGGGTGGCAG	A	9054.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	22208030	rs921847	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	22211217	rs2290493	G	A	1933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=7.50;ReadPosRankSum=3.057;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:155,103:0.40:258
chr1	22211222	rs4654994	T	C	9146.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=33.14;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr1	22214127	rs2229478	A	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr1	22215088	rs2445140	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	22215193	rs149677207	G	A	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr1	22216574	rs2254358	C	A	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:194,135:0.41:329
chr1	22216604	rs2254357	C	G	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:192,131:0.41:323
chr1	22217108	rs2501260	G	A	17849.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr1	22303702	rs4415533	C	A	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,61:0.47:131
chr1	22304463	rs12058649	A	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=29.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	22307340	rs7528228	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.15;QD=29.58;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	22307358	rs7528300	C	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	22307538	rs7528405	C	T	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	22310080	rs10799723	G	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	22310139	rs10733031	T	G	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.70;QD=45.39;SOR=1.566;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	22310145	rs10733032	C	T	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.25;QD=43.71;SOR=1.630;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	22310262	rs10733033	G	C	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	22310411	rs28468423	A	G	2577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.74;MQRankSum=-0.183;QD=41.58;ReadPosRankSum=1.685;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr1	22310411	.	AGA	GGG	2740	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=48.23;NF=22;NR=41;PP=2740;QD=20;SC=CACCAAGACCAGACCTTGTAC;SbPval=0.79;Source=Platypus;TC=70;TCF=29;TCR=41;TR=63;WE=22310421;WS=22310401;set=Platypus	GT:AD:AF:DP	1/1:7,63:0.90:70
chr1	22310413	rs7549398	A	G	2577.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.79;MQRankSum=-0.146;QD=42.26;ReadPosRankSum=1.822;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr1	22310662	rs6426735	G	T	21046.77	.	AC=2;AF=1.00;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	1/1:0,804:1.00:804
chr1	22310674	rs7538207	C	T	19551.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr1	22310725	rs3820287	G	C	10828.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr1	22310824	rs1803531	T	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	22313161	rs1803530	T	C	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.64;QD=25.54;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	22313197	rs34963341	C	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr1	22315662	rs12082371	C	T	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.54;MQRankSum=-1.642;QD=8.90;ReadPosRankSum=0.581;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:128,47:0.27:175
chr1	22315666	rs55665598	G	A	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.27;MQRankSum=-1.356;QD=8.95;ReadPosRankSum=0.494;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:127,47:0.27:174
chr1	22315710	rs12071902	G	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=49.63;MQRankSum=-1.643;QD=3.31;ReadPosRankSum=-0.040;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:131,44:0.25:175
chr1	22315738	rs4655006	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.02;QD=27.84;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	22324705	rs7534936	T	C	3130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.562;QD=10.87;ReadPosRankSum=0.696;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:129,159:0.55:288
chr1	22328279	rs12751986	C	T	2647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-0.910;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:145,133:0.48:278
chr1	22329041	rs71016961	GC	G	812.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=5.357;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-6.263;QD=3.60;ReadPosRankSum=1.049;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:182,44:0.19:226
chr1	22329062	rs143337942	CC	GT	5587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.298;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.414;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-11.328;QD=17.46;ReadPosRankSum=0.010;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:173,147:0.46:320
chr1	22329220	rs55638883	G	A	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:196,87:0.31:283
chr1	22329346	rs200212152	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr1	22329407	rs12756442	G	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-4.772;QD=8.05;ReadPosRankSum=0.604;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr1	22329414	rs10917107	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,53:0.62:85
chr1	22329645	rs4543768	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr1	22333595	rs3820290	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr1	22333688	rs3820289	T	C	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr1	22336277	rs3820285	C	G	5448.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	22336305	rs9187	C	T	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.928;QD=12.83;ReadPosRankSum=0.594;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:133,74:0.36:207
chr1	22336308	rs12908	G	A	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=0.971;QD=13.02;ReadPosRankSum=0.458;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:130,74:0.36:204
chr1	22336371	rs3806297	C	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,75:0.65:116
chr1	22408106	rs2501282	G	A	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	22447148	rs12756110	G	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	22447645	rs41420150	C	CTG	2095.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	22818139	.	A	AT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.030;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr1	22832743	rs209732	A	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	22835677	rs209729	A	G	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:135,116:0.46:251
chr1	22837586	rs34404742	CT	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.509;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.048;QD=4.18;ReadPosRankSum=-0.957;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	22846709	rs209720	G	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	22849003	rs998978	A	C	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	22852715	rs881646	G	C	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.069;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:126,101:0.44:227
chr1	22921794	rs200214765	C	T	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:179,134:0.43:313
chr1	22925292	rs664340	C	G	7101.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	22928265	rs209700	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr1	22965438	rs172378	A	G	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:199,189:0.49:388
chr1	22970642	rs15940	C	T	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.270;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:56,53:0.49:109
chr1	22970828	rs666656	G	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	22974297	rs9434	C	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	22987958	rs10580	A	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	23045943	rs2869513	A	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr1	23101688	rs1561624	T	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	23108089	rs2817904	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	23216712	rs309474	T	C	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=1.286;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:24,32:0.57:56
chr1	23219187	rs116119	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	23219493	rs309472	T	C	9338.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	23223116	rs309466	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,90:0.49:183
chr1	23232400	rs309502	C	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	23236826	rs309497	C	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr1	23280424	rs12048993	G	T	2179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-1.610;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:99,108:0.52:207
chr1	23289568	rs10799777	T	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-1.777;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:49,48:0.49:97
chr1	23289624	.	G	C	1112.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:71,60:0.46:131
chr1	23291582	rs4655138	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr1	23342193	rs10917344	C	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	23342362	rs681648	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	23356864	rs10799788	G	A	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	23380198	rs579785	A	G	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	23385826	rs79588010	CTT	C	1007.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr1	23399932	rs967605	C	T	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	23405794	rs2072945	A	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	23405872	rs2072944	T	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	23409538	rs2235546	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	23418153	rs10799790	C	T	5458.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	23419261	rs477717	G	A	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	23419374	rs3765407	G	T	11841.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	23419383	rs477830	C	T	12271.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	23419855	rs1983965	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	23519477	rs623988	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	23519508	rs113803399	T	TA	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.051;QD=4.81;ReadPosRankSum=0.434;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:59,37:0.39:96
chr1	23664493	rs201750367	GT	G	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	23664511	rs11586100	T	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	23688933	rs2849028	A	G	6378.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	23693422	rs2849025	T	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	23696152	rs665977	G	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	23710805	rs605468	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	23713952	rs676363	T	G	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	23720260	rs2486078	T	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	23724183	rs2275355	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	23735241	rs1198423	G	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	23743581	rs2156087	C	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	23751140	rs71514235	G	T	4268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.273;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:272,217:0.44:489
chr1	23755513	rs1198430	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	23758134	rs1198434	A	G	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	23760253	rs80255798	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr1	23761028	rs74415268	G	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr1	23763449	rs115515935	G	A	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,60:0.48:125
chr1	23765472	rs1767148	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	23765807	rs12132844	C	G	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr1	23767669	rs12117542	A	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr1	23782722	rs78337828	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr1	23810658	rs71514236	G	A	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=0.859;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	23836364	rs2075993	A	G	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.579;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:92,70:0.43:162
chr1	23847464	rs2075995	C	A	2284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.484;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:63,108:0.63:171
chr1	23885498	rs11574	T	C	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	23885599	rs2067053	T	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:90,68:0.43:158
chr1	23954126	rs34020220	T	TAC	1543.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:5,48:0.91:53
chr1	23955186	rs139494227	T	TTTATTATTATTATTA,TTTATTATTATTATTATTATTATTATTA	1235.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.55;QD=53.73;SOR=1.708;set=HC	GT:AD:AF:DP	1/2:0,12,11:0.52,0.48:23
chr1	24018277	rs10917413	C	G	5966.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	24022437	rs2280437	A	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:95,111:0.54:206
chr1	24082286	rs10917422	T	A	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.522;QD=1.52;ReadPosRankSum=2.044;SOR=1.430;set=HC	GT:AD:AF:DP	0/1:103,30:0.23:133
chr1	24083494	rs2076345	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr1	24106510	rs3831910	A	AT	547.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr1	24129126	rs2076343	A	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:85,105:0.55:190
chr1	24134721	rs719400	T	C	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:113,96:0.46:209
chr1	24143932	rs2076344	A	G	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.844;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:45,45:0.50:90
chr1	24151996	rs6697805	C	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	24172765	rs11456086	C	CT,CTT	483.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.90;MQRankSum=0.000;QD=12.40;ReadPosRankSum=1.027;SOR=0.476;set=HC	GT:AD:AF:DP	1/2:8,18,13:0.46,0.33:39
chr1	24180806	rs55699941	TA	T	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.503;QD=4.72;ReadPosRankSum=1.237;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:51,35:0.41:86
chr1	24180962	rs13551	T	C	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-1.679;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:100,129:0.56:229
chr1	24192200	rs34902309	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	24194748	rs2070956	G	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr1	24194773	rs2070955	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr1	24194788	rs2070954	A	G	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	24201162	rs2229579	G	A	3161.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:130,151:0.54:281
chr1	24255844	rs71575785	C	CTAT,CTATTATTAT	496.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=38.21;SOR=2.147;set=HC	GT:AD:AF:DP	1/2:0,5,8:0.38,0.62:13
chr1	24294587	rs145191744	G	A	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	24383819	rs7540491	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.384;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr1	24388371	rs4649168	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	24389509	rs67138023	GAA	G	436.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	24390731	rs7555384	C	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	24393656	rs12026723	G	A	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:111,116:0.51:227
chr1	24393729	rs11249090	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr1	24395003	rs6660675	T	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	24397473	rs34631595	G	GC	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	24400584	rs6660949	G	C	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	24400633	rs10903083	C	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	24406535	rs35446243	G	A	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:185,200:0.52:385
chr1	24406647	rs4649175	G	A	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:193,167:0.46:360
chr1	24408015	rs10903090	C	G	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr1	24408765	rs4333801	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr1	24409191	rs4320729	C	T	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:151,150:0.50:301
chr1	24413159	rs6424152	T	C	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:96,110:0.53:206
chr1	24413427	rs6686608	T	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	24416059	rs4393101	T	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	24416070	rs7533060	G	C	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:51,70:0.58:121
chr1	24418768	rs7556176	T	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	24419496	rs4233050	A	G	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	24421334	rs6678411	G	T	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	24421474	rs6678540	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	24421875	rs11249143	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	24421950	rs4319261	C	G	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	24424380	rs200555878	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr1	24434717	rs11447181	T	TC	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	24448084	rs17852648	G	A	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	24460797	rs17852649	T	G	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	24484441	rs946671	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	24485518	rs10751769	T	C	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	24485813	rs4649194	T	C	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	24486216	rs6143167	G	GTTTTGTTTTTTTTGTTT	376.75	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	24513768	rs4090311	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	24671287	rs4648859	C	T	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.823;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.610;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:124,88:0.42:212
chr1	24671464	.	ACCCTCCACACCTGTGCC	A	352.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	24673247	rs6702097	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	24673866	rs6691722	A	G	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,84:0.48:174
chr1	24684116	rs7527465	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	24684728	rs11249092	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr1	24687653	rs532147	T	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	24718075	rs2294520	T	C	2681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.48;ReadPosRankSum=1.058;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:123,133:0.52:256
chr1	24727678	rs2078445	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr1	24746205	rs12125143	C	T	2655.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr1	24768778	rs4648863	G	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	24779855	rs2272934	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=1.457;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr1	24780521	rs56978150	C	CT	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.040;QD=5.17;ReadPosRankSum=-1.370;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr1	24784139	rs10903089	A	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr1	24784197	rs195718	T	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr1	24785393	rs2272935	C	T	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:116,110:0.49:226
chr1	24792617	rs195725	T	A	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:148,106:0.42:254
chr1	24840768	rs196403	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	24861704	rs196432	G	A	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.436;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr1	24922129	rs10903095	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	24927561	rs4553122	T	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	24927625	rs4378146	C	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	24989762	rs4649011	G	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	25098245	rs9332415	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	25098341	rs7548438	C	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:61,91:0.60:152
chr1	25140825	rs3890756	A	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	25153692	rs4649022	G	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	25153698	.	T	G	939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.769;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr1	25234062	rs34878696	T	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	25254317	rs7517302	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr1	25256444	rs71514255	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	25291010	rs6672420	A	T	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	25350186	rs416365	G	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	25569296	.	T	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=1.101;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	25570081	rs1043879	T	C	2210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.146;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:105,112:0.52:217
chr1	25570550	rs5773124	A	AT	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.684;QD=11.41;ReadPosRankSum=0.500;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr1	25634205	rs2257611	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	25648349	rs28669938	T	C	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	25678000	.	T	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=-1.095;QD=5.02;ReadPosRankSum=0.651;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr1	25678002	rs66744254	TA	T	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.011;QD=9.92;ReadPosRankSum=0.797;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	25678238	rs3093616	T	A	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	25717365	rs609320	C	G	2857.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:121,137:0.53:258
chr1	25747230	rs586178	G	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.88;QD=32.92;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	25889342	rs10687390	CAG	C	2395.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	25889422	rs12096438	C	T	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr1	25889632	rs6687605	T	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:9,138:0.94:147
chr1	25889672	rs6688931	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	25890050	rs6661159	A	G	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	25890189	rs28969504	A	G	10224.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr1	26085048	rs11321223	AG	A	4528.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	26090072	rs807270	A	G	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	26098107	rs2072747	G	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	26098333	rs807264	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	26107688	rs807273	C	A	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr1	26109237	rs12567324	A	G	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	26110065	rs3820514	A	G	5867.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	26110143	rs3767877	G	A	11769.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	26127425	rs6659086	G	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr1	26131654	rs7349185	G	A	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr1	26135116	rs115852080	G	A	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:114,158:0.58:272
chr1	26138136	rs760598	C	A	4247.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:239,211:0.47:450
chr1	26138262	rs760597	T	C	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:133,145:0.52:278
chr1	26139137	rs10902685	C	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr1	26139392	rs3738451	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	26139444	rs10751726	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.898;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	26139919	rs6676509	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-0.672;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	26140573	rs2294228	C	A	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:155,107:0.41:262
chr1	26146884	rs984412	C	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr1	26150023	rs11247758	C	T	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:47,40:0.46:87
chr1	26152666	rs6598923	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr1	26152758	rs6598924	A	G	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:114,126:0.53:240
chr1	26227608	.	CAAAA	C	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.130;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr1	26310394	rs2275102	A	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	26314564	rs2245979	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	26349967	rs1938405	C	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	26357178	rs368362104	AC	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.154;QD=1.06;ReadPosRankSum=1.252;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr1	26357656	rs2736831	C	A	15598.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr1	26357855	rs2802321	A	G	7672.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	26358752	rs5773143	T	TA	4388.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	26365374	rs4659404	T	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	26365549	rs2997452	C	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	26372144	rs6686190	A	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	26392824	rs35123100	C	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr1	26496383	rs2232647	G	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	26496455	rs2232648	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr1	26510336	rs115982258	C	T	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:52,66:0.56:118
chr1	26510439	rs12733981	G	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	26511139	rs2297711	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	26511700	rs2783680	A	G	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	26515956	rs1045105	C	A	6795.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:408,341:0.46:749
chr1	26517667	rs11247864	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=1.193;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:38,35:0.48:73
chr1	26524706	rs9970046	A	G	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	26527783	rs6703730	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.681;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr1	26527863	rs17163674	C	T	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=2.111;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:56,87:0.61:143
chr1	26528922	rs10902720	C	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	26529121	rs6691747	G	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	26582091	rs3795686	G	A	4591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=0.296;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:262,235:0.47:497
chr1	26597435	rs4659419	G	A	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	26597673	rs11247894	G	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	26601385	rs3795685	G	A	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	26608649	rs12750420	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	26608782	rs34209692	C	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=-0.169;QD=9.67;ReadPosRankSum=-0.954;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:51,47:0.48:98
chr1	26608811	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T	1366.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=12.724;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=-0.879;QD=9.49;ReadPosRankSum=-0.664;SOR=0.196;set=HC	GT:AD:AF:DP	0/1:102,42:0.29:144
chr1	26608814	rs6672357	A	G	1616.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.553;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.877;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=2.078;QD=19.96;ReadPosRankSum=0.053;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:42,39:0.48:81
chr1	26608825	.	TGGGGCCG	T	1792.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=8.840;MLEAC=1;MLEAF=0.500;MQ=61.08;MQRankSum=1.759;QD=19.70;ReadPosRankSum=-2.114;SOR=1.607;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	1836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=8.660;MLEAC=1;MLEAF=0.500;MQ=61.06;MQRankSum=1.706;QD=19.75;ReadPosRankSum=-2.324;SOR=1.556;set=HC	GT:AD:AF:DP	0/1:42,51:0.55:93
chr1	26609259	rs7522905	C	T	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	26609307	rs6598952	G	T	10283.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	26610891	rs4332350	A	C	6677.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:1,256:1.00:257
chr1	26612042	rs11247898	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	26620846	rs3832184	C	CA	7771.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	26627478	rs2276712	T	C	18197.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr1	26629465	rs11803933	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	26646611	rs111668601	TA	T	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.700;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.144;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:84,36:0.30:120
chr1	26646726	rs1071849	A	G	13704.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	26646730	rs17645	A	G	13490.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	26648551	rs11247913	G	C	9291.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr1	26650550	rs11247915	C	A	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	26654937	rs11589684	G	C	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	26655208	rs11247916	C	T	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	26655462	rs12057290	C	T	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	26655507	rs11247917	C	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	26662774	rs7517559	C	T	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	26663362	rs10751735	C	T	9108.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:1,347:1.00:348
chr1	26664968	rs11247919	C	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	26671505	.	AACCTCTTTCCAGGTGGGAAATGAGGCATCAGGAGCACCGGGGCCCTTCACG	A	1910	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=1;HapScore=1;MGOF=27;MMLQ=23;NF=10;NR=14;SC=GGCCCTTCACAACCTCTTTCC;SbPval=0.53;Source=Platypus;TC=42;TCF=17;TCR=25;TR=24;WE=26671563;WS=26671495;set=Platypus	GT:AD:AF:DP	1/1:18,24:0.57:42
chr1	26671522	.	GAAATGAGGCATCA	G	3559.73	.	AC=2;AF=1.00;AN=2;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.58;QD=45.06;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	26671538	.	AGCAC	A	3712.73	.	AC=2;AF=1.00;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.90;QD=47.60;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	26671544	.	GGGGCCCTTCACGACCTCTTTCCAGGTGGGGAACA	G	3543.73	.	AC=2;AF=1.00;AN=2;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.86;QD=44.86;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	26689659	rs11247932	G	A	1917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=1.470;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:107,97:0.48:204
chr1	26691174	rs11247933	C	A	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr1	26700795	rs7520030	T	C	8747.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	26752992	rs4659441	T	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	26786627	rs3816539	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	26856462	rs11800553	T	G	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	26869610	rs921893	G	A	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	26870730	rs1466286	C	G	5649.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	26872554	rs12723936	A	G	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	26879376	rs7543005	T	C	10677.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.31;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	26879792	rs4970489	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	26879920	rs4970490	T	C	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	26880989	rs873151	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	26881806	rs897641	C	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	26887150	rs34062688	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	26887592	rs1064196	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	26898142	rs188158	A	G	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	26898956	rs282176	T	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	26899687	rs282178	C	A	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:130,103:0.44:233
chr1	26900735	rs282179	C	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	26901090	rs11113	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	27179062	rs10902645	G	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr1	27210721	rs3170660	T	C	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	27320356	rs6689941	T	C	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	27339103	rs4970471	G	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.893;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr1	27426796	rs4266911	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	27427041	rs4418629	T	C	10523.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	27609980	rs6670124	T	G	7704.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr1	27610043	rs41291064	T	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr1	27660340	rs12758154	T	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	27660568	rs35771571	G	A	10323.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr1	27661037	rs12565684	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	27661755	rs71294466	T	TGTA	2444.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	27676289	.	G	T	2655.77	.	AC=1;AF=0.500;AN=2;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,125:0.52:241
chr1	27676925	rs6702341	G	A	13467.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr1	27677409	rs113120872	G	A	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:103,112:0.52:215
chr1	27679692	rs11247639	A	G	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	27679797	rs3813795	A	G	10022.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:2,393:0.99:395
chr1	27679954	rs1128918	G	A	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	27680292	rs8533	A	G	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	27682126	rs12742921	T	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	27686063	rs7521552	G	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	27687366	rs35733093	C	G	9553.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	27688633	rs1138294	G	A	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	27696011	rs10218730	C	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	27720178	rs2504786	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr1	27720353	rs11586015	C	A	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:96,105:0.52:201
chr1	27875824	rs4908364	C	T	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr1	27876482	rs2076457	C	A	11511.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:2,438:1.00:440
chr1	27877418	rs113173951	G	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:208,217:0.51:425
chr1	27878162	rs112179924	C	T	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:151,120:0.44:271
chr1	27944000	rs1292089	T	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	27995077	rs56015130	G	T	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,117:0.99:118
chr1	28086955	rs10902671	C	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	28206588	rs12568383	T	C	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:137,133:0.49:270
chr1	28209305	rs3766398	A	G	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:108,109:0.50:217
chr1	28209362	rs3766399	T	C	3682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=-1.327;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:123,101:0.45:224
chr1	28209366	rs3766400	A	G	3608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.991;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.55;ReadPosRankSum=-0.217;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:125,93:0.43:218
chr1	28211650	rs1467464	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr1	28212272	rs11247705	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr1	28220484	rs17257252	C	A	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.064;QD=10.50;ReadPosRankSum=-0.528;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:68,75:0.52:143
chr1	28233572	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=1.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.352;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr1	28240648	rs28988897	C	T	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:119,122:0.51:241
chr1	28261658	rs3831926	T	TG	587.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr1	28261902	rs3737807	C	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr1	28268573	rs10902678	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	28268706	rs4908341	G	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-1.550;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:31,38:0.55:69
chr1	28268833	rs11386058	C	CG	2287.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:81,60:0.43:141
chr1	28268835	rs5018921	A	C	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr1	28282292	rs3813803	T	C	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:75,87:0.54:162
chr1	28282819	rs4908381	T	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	28290231	rs4373781	C	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	28323718	rs3831309	TG	T	1453.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chr1	28369279	rs2476547	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr1	28422847	rs2989472	C	T	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	28422967	rs34450732	C	CT	2841.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.039;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:287,201:0.41:488
chr1	28535044	.	TAA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.34;ReadPosRankSum=1.029;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	28832713	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.052;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	28920274	rs148442336	A	G	3327.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:137,150:0.52:287
chr1	29016716	rs6678913	T	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=6.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.431;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:43,31:0.42:74
chr1	29018316	rs10538696	TTTTA	T	724.06	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	29019724	rs4654365	G	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	29037240	rs11415888	C	CT	224.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.530;QD=12.50;ReadPosRankSum=-0.783;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr1	29063559	rs6697540	A	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	29070609	rs3835537	A	AG	366.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	29138975	rs1042114	G	T	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	29189597	rs2234918	C	T	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:305,274:0.47:579
chr1	29345009	rs5773229	C	CTT	859.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	29475341	rs2230678	C	T	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	29475394	rs2230677	C	G	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	29475648	rs2230679	T	G	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	29508350	rs571016	C	T	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:60,47:0.44:107
chr1	29529699	rs1062924	T	C	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:1,217:1.00:218
chr1	29542435	rs2640469	C	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	29542637	rs1128400	A	G	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	29557224	rs2640466	C	T	11696.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr1	29563059	rs75011501	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	29616318	rs2076620	C	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:118,128:0.52:246
chr1	29631236	rs3831903	C	CTA	12819.73	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:386,334:0.46:720
chr1	29842261	rs10915168	A	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	29842303	rs140458694	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=2.155;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	29842354	rs111593358	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.379;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:64,15:0.19:79
chr1	31186254	rs1188405	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	31188089	rs1065755	C	T	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	31188901	rs20566	A	G	8357.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	31191516	rs10914186	G	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	31192128	rs3790493	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr1	31196464	rs74975149	C	T	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.82;ReadPosRankSum=1.686;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:38,29:0.43:67
chr1	31206637	rs3795438	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr1	31206806	rs3795437	T	C	1829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.044;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:96,93:0.49:189
chr1	31206957	rs12404920	T	C	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	31208042	rs35351292	C	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:82,95:0.54:177
chr1	31210667	rs1188355	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	31215364	rs1050663	T	C	12955.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr1	31406286	rs58664754	TAC	T	352.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=3.479;QD=23.52;ReadPosRankSum=0.475;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	31409726	rs56387244	CCT	C	876.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr1	31415039	rs374274848	TA	T	774.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=9.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.82;ReadPosRankSum=3.646;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr1	31415041	rs376153577	TATATATATATATATA	T	487.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=7.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=3.679;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	31418119	rs12142833	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr1	31426815	rs2275741	A	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-1.352;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr1	31440921	rs4317854	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	31445932	rs2491135	C	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	31446069	rs146432389	TG	T	940.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=-0.060;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	31446071	rs368200818	T	A	949.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=0.110;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	31446099	.	TA	T	108.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.246;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	31478638	rs10580059	AAGAGAG	A	1451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.04;ReadPosRankSum=0.012;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:24,45:0.65:69
chr1	31479005	rs1337046	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	31501755	rs4949331	T	C	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:75,77:0.51:152
chr1	31654940	rs2297959	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	31732390	rs6425725	G	A	124.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	31732602	rs59591825	CA	C	748.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=13.87;ReadPosRankSum=0.042;SOR=0.532;set=HC	GT:AD:AF:DP	1/1:5,49:0.91:54
chr1	31732892	rs2292165	G	A	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	31733674	rs36125997	C	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=23.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	31733710	rs72241834	C	CAA	182.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=22.84;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	31733926	rs12121460	A	G	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	31744505	rs113021667	A	AT	409.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.996;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:4,25:0.86:29
chr1	31754367	rs7513215	T	C	6148.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	31761989	rs1532859	G	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	31762374	rs1532858	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	31764930	rs10733007	T	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	31819407	rs34746219	A	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.99;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	31821932	rs34282779	TA	T	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	31838551	rs5773353	T	TAA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.166;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=-0.349;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	31838909	.	ATGTGTGTG	A,ATG	268	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5003,0.4997;HP=2;HapScore=2;MGOF=11;MMLQ=24;MQ=60.0;NF=0,0;NR=8,8;PP=268,26;QD=33.875;SC=ATATGTATGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=8,8;WE=31838924;WS=31838899;set=Platypus	GT:AF:DP	0/1:0.73:11
chr1	31882582	rs4012494	G	GGCCTCA	2290.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	31883295	rs6701521	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	31886163	rs12042883	C	T	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:166,181:0.52:347
chr1	31886750	rs142597528	G	GTCCC	2834.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr1	31886833	rs10914377	T	C	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	31897493	rs1320585	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	31897773	rs12145995	C	T	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr1	31899684	rs10454445	A	T	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	31899704	rs10454446	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr1	31902279	rs34728687	G	A	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:242,216:0.47:458
chr1	31902418	rs10047085	A	G	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr1	31905889	rs3050461	A	ACAG	3983.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:143,108:0.43:251
chr1	31906882	rs11587589	A	G	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	31907102	rs7417775	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	31971675	rs201052102	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.596;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=9.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.169;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:26,4:0.13:30
chr1	31971680	.	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.658;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=9.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.419;SOR=0.025;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr1	31971684	rs1316427	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=9.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.753;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr1	31971701	rs201612393	GC	G	1952.75	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:4,47:0.92:51
chr1	31971707	rs35567548	G	A	2043.94	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:4,51:0.93:55
chr1	32044589	rs12736080	T	C	85.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=54.84;MQRankSum=-1.645;QD=17.17;ReadPosRankSum=1.645;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,3:0.60:5
chr1	32044595	rs12750558	C	G	87.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=55.10;MQRankSum=-1.645;QD=17.57;ReadPosRankSum=1.645;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,3:0.60:5
chr1	32044641	rs12753402	G	A	1208.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	32052145	rs45611233	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	32084904	rs1056526	C	T	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:152,160:0.51:312
chr1	32086912	rs2280386	A	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr1	32092525	rs2271933	A	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:129,98:0.43:227
chr1	32092605	rs1056527	G	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr1	32092735	rs2176807	T	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	32092918	rs141988488	T	TTCC	5053.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:145,132:0.48:277
chr1	32096265	rs1061770	A	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	32100551	rs3835520	GA	G	1813.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:90,91:0.50:181
chr1	32118160	rs1061392	C	A	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-1.011;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	32119347	rs67961612	AACAC	A	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr1	32119431	rs3817398	T	C	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.838;QD=12.45;ReadPosRankSum=0.042;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:38,57:0.60:95
chr1	32122164	rs7545321	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	32126135	rs41263967	C	T	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:167,124:0.43:291
chr1	32127911	rs2271927	C	T	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:61,173:0.74:234
chr1	32127953	rs2271928	G	A	3556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=43.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=0.456;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:70,165:0.70:235
chr1	32128283	rs1568396	C	G	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=18.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=1.183;SOR=4.199;set=HC	GT:AD:AF:DP	0/1:14,27:0.66:41
chr1	32131163	rs1356803	C	G	5932.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:306,292:0.49:598
chr1	32133737	rs2292988	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr1	32134491	rs2271929	C	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:85,74:0.47:159
chr1	32136168	rs2292990	G	C,T	3253.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=137;set=Intersection	GT:AF:DP	1/2:0.39,0.61:137
chr1	32136398	rs1474182	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr1	32140733	rs2292993	C	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr1	32145009	rs4949461	C	T	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	32148571	rs10737358	A	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	32155284	rs2297682	T	C	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.793;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:145,130:0.47:275
chr1	32155911	rs6425780	G	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	32155929	rs2297681	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	32156722	rs10914467	G	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:106,110:0.51:216
chr1	32156869	rs10798884	A	T	17445.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:3,655:1.00:658
chr1	32157531	rs2297676	T	C	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:140,147:0.51:287
chr1	32158374	rs3818788	T	C	3287.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:127,162:0.56:289
chr1	32159588	rs2275097	A	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-0.181;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr1	32160918	rs6656079	A	G	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:114,147:0.56:261
chr1	32163950	rs2297674	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr1	32164206	rs2228550	T	G	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr1	32165495	rs2228552	G	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:77,72:0.48:149
chr1	32167526	rs1815465	G	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	32193647	rs1127100	T	C	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:136,101:0.43:237
chr1	32196889	rs10914473	G	A	2469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.771;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:130,127:0.49:257
chr1	32266026	rs552124	A	G	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	32280610	rs6664445	T	C	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:149,134:0.47:283
chr1	32538782	rs2296450	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.892;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	32541440	.	GGT	G	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.573;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr1	32628786	rs189176322	G	A	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=1.219;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr1	32658062	rs79952364	G	GGT	4441.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	32689857	rs589034	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	32692168	.	A	AT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.030;QD=7.42;ReadPosRankSum=0.333;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	32768065	rs76067435	T	C	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.669;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=-1.424;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	32860161	rs547329	T	C	8486.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	32946720	rs61781220	T	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr1	33002066	.	C	CT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=1.576;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	33065947	rs704886	G	C	8655.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr1	33099798	rs704877	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr1	33117071	rs583114	T	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	33127730	rs1085416	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	33133968	rs2762904	T	C	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	33134774	rs359955	A	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-2.495;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr1	33134989	rs359956	A	G	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	33160878	rs360042	C	T	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	33161212	rs360041	T	C	16028.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr1	33231380	rs6694085	T	G	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=1.710;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:58,67:0.54:125
chr1	33231403	rs6702519	G	T	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=1.427;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:59,74:0.56:133
chr1	33233323	rs360523	A	G	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	33234128	rs3737992	G	A	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-1.296;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	33234136	rs360522	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.98;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	33252099	rs149745059	TCACATGCATGACTATTCCTAGCC	T	2542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=3.085;QD=14.53;ReadPosRankSum=-0.924;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:106,69:0.39:175
chr1	33256884	rs1765223	C	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.133;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr1	33272307	rs145764358	T	TA	437.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	33276424	rs4951787	G	A	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	33293748	rs10753266	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	33299816	rs4951773	A	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	33318561	rs702836	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	33318634	rs785274	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	33330432	rs1284368	A	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	33409551	rs194644	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr1	33409693	rs194645	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:93,65:0.41:158
chr1	33412186	.	A	C	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-1.433;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:46,29:0.39:75
chr1	33430102	rs113840389	T	G	90.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	33476353	rs66599471	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-6.313;QD=0.98;ReadPosRankSum=3.417;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:69,13:0.16:82
chr1	33476385	rs76881767	C	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-7.209;QD=1.51;ReadPosRankSum=-1.474;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:91,11:0.11:102
chr1	33476387	rs201842558	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-7.285;QD=1.42;ReadPosRankSum=-1.733;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:93,11:0.11:104
chr1	33485789	rs140580245	AACACACAC	A,AACAC	2806.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=154;set=Intersection	GT:AF:DP	1/2:0.63,0.36:76
chr1	33497070	rs1012884	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	33502184	rs11591185	G	A	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr1	33547768	rs1871322	T	C	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr1	33560338	rs804428	A	G	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	33631069	rs2306257	C	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	33641932	rs604941	A	G	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	33642152	rs643402	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr1	33646950	rs622407	A	G	1929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.336;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:81,96:0.54:177
chr1	33741615	rs7514338	T	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr1	33741787	rs12743549	G	A	5434.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:233,268:0.53:501
chr1	33741895	rs12743740	G	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:105,117:0.53:222
chr1	33742228	rs4475712	T	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	33746163	rs10914676	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	33760743	rs4641276	T	C	6021.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:247,280:0.53:527
chr1	33777524	rs6679416	T	C	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	33778226	rs12563102	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	33778591	rs6664593	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	33790496	rs11554674	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,41:0.36:114
chr1	33799548	rs12044118	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	33799900	rs12734630	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	33820134	rs12026290	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,45:0.39:114
chr1	33832865	rs6425816	A	G	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	33834416	rs12144672	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	33836796	rs7545416	C	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	33957152	rs4403594	T	G	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	33960062	rs9943259	A	G	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	33961147	rs3795420	T	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	34038214	rs2641962	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	34038413	rs2794602	A	C	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	34043169	rs11291100	TC	T	2028.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	34052305	rs12727575	C	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr1	34052605	rs7526990	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	34070826	rs12733436	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	34071434	rs1874044	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	34071525	rs1874045	C	T	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	34158472	rs12757315	C	T	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=0.409;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:80,56:0.41:136
chr1	34158482	rs12757320	C	T	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.044;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:92,67:0.42:159
chr1	34189917	rs519370	C	T	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	34189957	rs11346874	AG	A	2552.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	34238283	rs474474	T	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:72,66:0.48:138
chr1	34254108	rs34557326	C	CA	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=2.071;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr1	34270498	rs10737374	G	A	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:119,136:0.53:255
chr1	34285342	rs17342512	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chr1	34285381	rs11578857	C	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr1	34285995	rs3795414	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr1	34286189	rs3843294	A	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.201;QD=10.44;ReadPosRankSum=0.934;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr1	34329897	rs911218	T	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	34330067	rs10379	A	C	8997.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	34383554	rs12124122	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	34631200	rs150837376	AAC	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.538;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.584;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:80,11:0.12:91
chr1	34663208	rs1382602	C	G	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:116,120:0.51:236
chr1	34663411	rs1414474	C	G	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:126,111:0.47:237
chr1	34667863	rs12746310	C	A	2477.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:96,119:0.55:215
chr1	34673701	rs41266413	A	C	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:164,118:0.42:282
chr1	34684463	rs705207	G	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	35135315	rs2147385	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	35135349	rs149069469	G	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	35183838	rs683589	A	C	1288.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	35184033	rs693582	C	T	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	35184084	rs693852	C	T	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	35227007	rs146812843	TTGTC	T	8441.73	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:249,222:0.47:471
chr1	35332926	rs1001616	G	C	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr1	35561510	rs2101973	G	A	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	35562965	rs2971408	G	A	8833.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	35563206	rs6658571	C	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	35576145	rs2935955	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	35652935	rs113612711	A	G	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr1	35925861	rs2819002	C	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:5,104:0.95:109
chr1	36031117	rs55743884	C	T	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=1.948;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:120,93:0.44:213
chr1	36203715	rs67465242	AT	A	1503.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.69;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	36203717	.	ATAT	A	204.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.214;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=2.197;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr1	36203720	rs201555109	T	A	49.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.124;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	36203722	rs199569493	T	A	1242.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.51;ReadPosRankSum=1.671;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr1	36203724	.	T	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=1.870;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr1	36205166	rs577483	A	G	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	36213712	rs516992	G	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	36216835	rs535638	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	36282417	rs2791960	A	G	1480.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=0.000;QD=20.86;ReadPosRankSum=0.244;SOR=0.578;set=HC	GT:AD:AF:DP	1/1:1,70:0.99:71
chr1	36307120	rs41308341	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,64:0.47:136
chr1	36307412	rs5773512	CAT	C	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.38;ReadPosRankSum=-0.562;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	36316418	rs11403763	C	CA	1367.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-1.108;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:11,76:0.87:87
chr1	36316571	rs4652895	A	C	4962.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	36384028	rs61751004	G	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:101,71:0.41:172
chr1	36553673	rs399393	A	G	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	36556779	rs67749899	CA	C	1090.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.957;QD=9.83;ReadPosRankSum=-0.237;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:52,59:0.53:111
chr1	36563158	rs3738360	C	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	36565584	rs274753	C	G	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	36565617	rs274754	G	A	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	36602943	rs2231318	C	T	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr1	36641729	rs2296263	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	36642420	rs475591	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr1	36643700	rs141305015	GAGA	G	3216.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:105,88:0.46:193
chr1	36752152	rs2242428	C	T	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:93,75:0.45:168
chr1	36752433	rs6425977	C	T	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	36762396	rs1566589	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	36767400	rs882799	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	36773405	rs35343437	T	G	4279.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:263,212:0.45:475
chr1	36773819	rs11263871	C	G	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	36785103	.	C	T	2746.77	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:150,131:0.47:281
chr1	36787888	rs58971913	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr1	36788356	rs7536394	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	36807481	rs3795498	C	T	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr1	36881871	.	C	CTTT	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=8.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=1.201;SOR=2.964;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr1	36883946	rs16822888	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr1	36884473	rs57413616	A	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.356;QD=6.93;ReadPosRankSum=-1.357;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr1	36884529	rs202052052	AG	A	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.688;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr1	36886364	rs2275478	C	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	36887702	rs2236565	C	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	36887870	rs16822940	C	T	2629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.60;ReadPosRankSum=0.577;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:120,128:0.52:248
chr1	36887965	rs16822942	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr1	36888302	rs35889349	C	CT	1236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.519;QD=8.90;ReadPosRankSum=-0.391;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:48,91:0.65:139
chr1	36888462	rs1416840	A	G	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:107,118:0.52:225
chr1	36888520	rs16822952	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr1	36888889	rs115230603	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	36889005	rs16822954	G	A	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-0.173;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:81,83:0.51:164
chr1	36889197	rs11263892	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.21;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	36889197	.	TG	CA,CG	126	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=3;HapScore=3;MGOF=12;MMLQ=23;MQ=60.0;NF=2,8;NR=5,12;PP=82,126;QD=19.3525535517;SC=AGGGAGAGGCTGGGCGCAGTG;SbPval=0.82;Source=Platypus;TC=20;TCF=8;TCR=12;TR=7,20;WE=36889206;WS=36889187;set=Platypus	GT:AF:DP	0/1:0.35:20
chr1	36889198	rs114936259	G	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.189;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	36893968	rs61308377	A	G	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:176,184:0.51:360
chr1	36898338	rs76403041	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	36909385	rs10908303	G	A	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	36909567	rs3795495	G	A	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:194,185:0.49:379
chr1	36913601	rs16823009	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	36921533	rs2275480	A	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	36923494	rs12023818	G	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:81,62:0.43:143
chr1	36923643	rs16823045	G	C	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr1	36926409	rs3738838	G	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr1	36926461	rs3738840	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr1	36926946	rs2275475	T	G	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=2.053;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:59,54:0.48:113
chr1	36927733	rs7065	G	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	36927846	rs16823052	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr1	36929660	rs71713603	A	ATCTCCCCTACTCCTGTGCTTCCT	6955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=13.640;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.412;QD=20.83;ReadPosRankSum=0.749;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:197,137:0.41:334
chr1	36929988	rs3806289	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr1	36933096	rs3918000	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr1	36934976	rs3917990	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	36935128	rs3917989	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr1	36935317	rs3917988	C	T	4510.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:205,218:0.52:423
chr1	36937059	rs3917981	A	G	3894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=4.621;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=17.70;ReadPosRankSum=0.414;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:112,108:0.49:220
chr1	36937065	rs3917980	A	G	3808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=18.49;ReadPosRankSum=1.155;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:106,100:0.49:206
chr1	37282884	rs3012032	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:75,68:0.48:143
chr1	37285555	rs61769768	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	37307281	rs553882	T	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr1	37335458	rs577094	A	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	37335485	rs509284	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.10;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	37335494	rs577813	G	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	37626981	rs215756	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	37948212	rs215205	C	G	6549.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:350,331:0.49:681
chr1	37959450	rs215210	T	C	1642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=1.560;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:111,89:0.45:200
chr1	37959470	rs215211	C	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:95,77:0.45:172
chr1	37959499	rs215212	G	C	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr1	37961317	rs215213	A	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.682;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr1	37975279	rs215214	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	37975312	rs2036637	T	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	37978897	rs61779866	G	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr1	37980446	rs215873	A	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	38006359	rs2174769	A	G	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,51:0.50:101
chr1	38023316	rs11749	C	T	4626.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:289,240:0.45:529
chr1	38046920	rs2360010	G	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-1.418;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:60,42:0.41:102
chr1	38049552	rs6426024	C	G	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr1	38061572	rs6697632	G	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	38078630	rs55852308	A	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	38082122	rs12039431	GC	AT	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	38148765	rs684260	A	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	38149193	rs686083	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr1	38155265	rs586252	G	C	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:70,87:0.55:157
chr1	38161694	rs615530	A	G	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:80,72:0.47:152
chr1	38164724	rs557290	C	G	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr1	38166022	rs513826	T	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr1	38167345	.	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.266;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr1	38167361	rs67680207	A	AC	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=3.736;SOR=1.474;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr1	38174185	rs557897	G	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr1	38181503	rs7512242	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr1	38184316	rs609437	T	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr1	38185647	rs2170809	G	A	3458.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:147,169:0.53:316
chr1	38185723	rs6670599	C	T	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr1	38186206	rs12726343	C	G	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:171,143:0.46:314
chr1	38186310	rs12729055	G	A	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr1	38187447	rs579908	A	G	1697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.828;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:110,49:0.31:159
chr1	38187453	rs33970734	G	A	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=1.490;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:114,53:0.32:167
chr1	38187802	rs372211780	CA	C	572.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr1	38187879	rs17511136	C	T	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:121,82:0.40:203
chr1	38187989	rs12123842	T	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:58,49:0.46:107
chr1	38188029	rs12756715	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr1	38188604	rs7517651	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:71,65:0.48:136
chr1	38188697	rs16824420	T	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:101,75:0.43:176
chr1	38188740	rs12405650	C	T	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-4.522;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:119,96:0.45:215
chr1	38188768	rs17464871	C	T	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:140,103:0.42:243
chr1	38188787	rs17511304	A	G	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:140,97:0.41:237
chr1	38188880	rs11582856	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:115,97:0.46:212
chr1	38188934	rs11577529	T	C	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:131,110:0.46:241
chr1	38220109	rs11584465	G	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr1	38227086	rs4653328	A	T	3384.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:250,179:0.42:429
chr1	38227442	.	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DP=356;set=Intersection	GT:AD:AF:DP	0/1:221,135:0.38:356
chr1	38260503	rs2306627	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr1	38272660	rs2291297	G	A	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:83,69:0.45:152
chr1	38289383	rs12751325	T	C	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=5.153;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.295;QD=6.24;ReadPosRankSum=-1.659;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:126,74:0.37:200
chr1	38293992	rs9329568	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	38301220	rs28378413	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	38301250	rs3912368	A	G	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	38301476	rs3762359	G	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.196;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:39,27:0.41:66
chr1	38327935	rs140670679	CAG	C	949.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr1	38327982	rs3843	G	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	38332057	.	T	TTC	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.477;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	38332078	.	T	TCACACACACACACACACA	177	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=23;MQ=57.38;NF=4;NR=10;PP=177;QD=12.8571428571;SC=TCTCTCTCTCTCACACACACA;SbPval=0.65;Source=Platypus;TC=39;TCF=12;TCR=27;TR=14;WE=38332087;WS=38332068;set=Platypus	GT:AD:AF:DP	1/0:25,14:0.36:39
chr1	38334317	rs2306425	TC	AA	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	38338795	rs11488569	A	G	7405.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	38345896	rs2306427	A	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr1	38352849	rs2279261	G	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	38397341	rs34655914	G	A	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:205,188:0.48:393
chr1	38397369	rs35267671	C	T	4609.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:233,215:0.48:448
chr1	38411350	rs11485595	C	T	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr1	38411445	rs871524	G	A	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:159,183:0.54:342
chr1	38423853	rs9293	G	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	38425629	rs34993722	CAA	C	387.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.160;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.46;ReadPosRankSum=-0.114;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr1	38425724	rs17531342	T	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	38425880	.	G	A	705.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:90,41:0.31:131
chr1	38425895	rs28675056	T	C	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	38442547	rs10890216	G	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	38444749	rs7555461	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	38447615	rs7533079	G	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	38449910	rs11210870	T	C	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:94,113:0.55:207
chr1	38450367	rs6680796	A	G	8055.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr1	38453576	rs10890285	A	C	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:124,109:0.47:233
chr1	38455389	rs3935867	C	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	38462898	rs4274021	T	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	38462905	rs12724533	C	G	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	38463504	rs7366048	C	T	5054.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:230,240:0.51:470
chr1	38464639	rs4570384	C	G	11055.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:1,407:1.00:408
chr1	38483498	rs12067225	A	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.858;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr1	38484665	rs200532400	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.240;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	38488506	rs34251728	C	CT	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=5.960;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.689;QD=7.59;ReadPosRankSum=-1.411;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:31,40:0.56:71
chr1	38554876	rs111227048	TG	T	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.301;MLEAC=1;MLEAF=0.500;MQ=63.98;MQRankSum=5.318;QD=13.34;ReadPosRankSum=-1.801;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	38554878	.	TG	T	380	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=4;MGOF=4;MMLQ=23;MQ=64.42;NF=4;NR=3;PP=380;QD=58.0;SC=TCCTTGTGTGTGGATGCACAC;SbPval=0.39;Source=Platypus;TC=18;TCF=8;TCR=10;TR=7;WE=38554886;WS=38554867;set=Platypus	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	38554879	rs58437512	G	T	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=64.19;MQRankSum=5.410;QD=13.19;ReadPosRankSum=-1.991;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	38555026	rs6671895	C	T	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.099;QD=10.77;ReadPosRankSum=-1.769;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:33,39:0.54:72
chr1	38555083	rs531013	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-0.981;QD=10.22;ReadPosRankSum=1.666;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr1	39325063	rs1925678	T	C	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr1	39340504	rs41270783	T	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr1	39385086	rs7522863	A	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	39457006	rs12043492	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.413;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	39457016	rs11547138	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	39457293	rs111311750	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.221;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=0.983;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	39466626	rs11205525	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr1	39466786	rs10888613	C	G	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.216;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.197;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:84,86:0.51:170
chr1	39466955	.	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-0.699;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	39494666	rs35464164	C	CT	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.279;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:23,41:0.64:64
chr1	39494687	rs3768323	G	A	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	39550210	rs260972	C	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	39568765	rs2282232	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr1	39571211	rs13374459	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	39717566	rs2490948	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	39719812	rs66880209	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr1	39734598	rs16826022	G	C	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.312;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:82,105:0.56:187
chr1	39748921	rs2275188	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr1	39757799	rs16826036	G	C	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr1	39758634	rs16826038	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,89:0.45:196
chr1	39758993	rs6688708	C	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	39763242	rs2275187	G	A	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:90,89:0.50:179
chr1	39766041	rs41270803	A	G	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr1	39766055	rs2275186	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr1	39796844	.	CTTTTTTTTTTTTTTT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=2.515;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr1	39797055	rs16826069	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr1	39801815	rs41270807	A	C	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr1	39802168	rs17570718	A	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr1	39806610	rs3116396	C	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	39812620	rs2490944	G	T	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	39812822	rs2761764	C	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	39815143	rs16826093	T	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:90,88:0.49:178
chr1	39815344	rs41270811	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr1	39816546	rs41270815	G	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:105,70:0.40:175
chr1	39823032	rs147223845	A	AT	1621.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:130,103:0.44:233
chr1	39824718	rs2256614	C	G	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	39826343	rs149306191	T	TATA	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	39826391	rs10632223	A	ATTAT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.247;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr1	39835817	rs2296172	A	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,55:0.45:121
chr1	39843958	rs663449	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	39851576	rs143338205	T	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr1	39879366	rs604316	T	C	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:191,163:0.46:354
chr1	39889677	rs663892	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.032;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:45,30:0.40:75
chr1	39893093	rs625384	C	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr1	39894839	rs645061	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	39895460	rs683135	G	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	39908506	rs587404	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	39908726	rs588326	A	G	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	39913351	rs2296173	A	G	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:93,90:0.49:183
chr1	39914363	rs668556	G	C	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=-0.586;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:83,69:0.45:152
chr1	39927507	rs783820	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	39929240	rs7554206	T	C	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:105,87:0.45:192
chr1	39957913	rs4660269	A	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=24.51;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	39958080	rs10888798	C	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr1	39981522	rs200818147	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:104,58:0.36:162
chr1	39981740	rs372271083	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	39987922	rs61779338	C	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr1	39988084	rs6525	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.764;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-7.233;QD=0.90;ReadPosRankSum=-0.586;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:159,27:0.15:186
chr1	39988145	rs6524	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-9.095;QD=1.66;ReadPosRankSum=2.992;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:168,35:0.17:203
chr1	39988799	rs41270825	G	A	3966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.923;QD=10.36;ReadPosRankSum=0.694;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:191,192:0.50:383
chr1	39991588	rs3738676	G	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr1	40028180	rs4660293	A	G	1133.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr1	40035686	rs17513135	C	T	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:116,120:0.51:236
chr1	40036847	rs2293476	G	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	40037354	rs41264487	C	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.829;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr1	40041371	rs79094524	G	GA	992.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr1	40041699	rs201925786	T	TCGGAGC	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr1	40092089	rs2695320	T	C	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	40096053	rs1148945	T	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=0.309;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	40098328	rs784625	T	C	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	40131089	rs734497	G	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr1	40149515	rs784633	A	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	40149642	rs784634	G	T	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	40149870	rs113763288	C	G	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=39.50;SOR=2.393;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	40149875	rs113459798	C	T	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=42.53;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	661.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	40150156	rs9662128	G	A	4820.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	40150370	rs2746058	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	40205803	rs201305192	TC	T	818.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr1	40207169	rs497333	T	G	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	40229297	rs71060328	A	AC	1649.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	40229319	rs493473	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	40229393	rs77290565	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=6.976;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-9.569;QD=1.56;ReadPosRankSum=-4.330;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:84,18:0.18:102
chr1	40229616	rs202005319	T	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	40230336	rs76376226	C	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.23;MQRankSum=-2.686;QD=3.68;ReadPosRankSum=-0.356;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:125,45:0.26:170
chr1	40230531	rs115705483	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:47,20:0.30:67
chr1	40235277	rs374340047	A	G	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	40235331	.	C	T	68	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=23;MQ=43.86;NF=7;NR=0;PP=68;QD=14.6816017925;SC=CCCGGTGGCACCCGCCCTGAG;SbPval=1.0;Source=Platypus;TC=33;TCF=30;TCR=3;TR=7;WE=40235339;WS=40235321;set=Platypus	GT:AD:AF:DP	0/1:26,7:0.21:33
chr1	40236074	rs230321	A	C	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	40240691	rs370056406	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.56;MQRankSum=-1.383;QD=8.08;ReadPosRankSum=0.967;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	40253726	rs230328	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.57;QD=23.90;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	40253768	rs60164088	C	CA	2360.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	40253770	rs4068800	C	T	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	40253786	rs230329	C	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	40253810	rs56694047	GC	G	1852.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr1	40253812	rs57439527	G	A	1861.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr1	40313107	rs79540048	G	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr1	40319587	rs2294814	A	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:110,57:0.34:167
chr1	40349131	rs3845570	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:57,88:0.61:145
chr1	40363054	rs3134614	G	C	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr1	40367592	rs804719	A	G	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=24.30;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	40367598	.	G	GCCC	1326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.295;QD=13.54;ReadPosRankSum=0.051;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:55,43:0.44:98
chr1	40432468	rs149937233	C	T	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:164,146:0.47:310
chr1	40526003	rs3122419	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	40528222	.	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=6.726;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-3.774;QD=3.67;ReadPosRankSum=-0.135;SOR=2.819;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr1	40528225	.	C	CATCACTATTCATAACAACAGACTTTTGGTGGTCAAGGGTCACAGGATAA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=6.726;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-3.774;QD=2.92;ReadPosRankSum=-1.081;SOR=2.819;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr1	40528445	rs111329903	T	TTGTGTG	674.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	40533266	rs11207440	T	G	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	40533287	rs6665926	T	G	7031.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	40533315	rs6665933	T	G	6485.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=43.82;SOR=3.080;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	40533320	rs6665936	T	G	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=44.65;SOR=3.105;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	40533326	rs6665937	T	G	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=45.21;SOR=3.241;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	40533347	rs6665944	T	G	5532.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	40536074	rs58190778	C	CT	5620.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	40545964	rs3122428	T	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	40555321	rs3131651	C	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	40556922	rs3122439	T	C	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	40557656	rs6672053	G	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	40558256	rs4481840	C	G	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	40737516	rs6677717	T	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	40771973	rs2076696	C	G	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:116,86:0.43:202
chr1	40773149	rs2228564	T	C	2813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.306;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:114,140:0.55:254
chr1	40776752	rs3737815	C	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr1	40777800	rs1979785	T	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr1	40777842	rs209918	A	G	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.359;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr1	40778377	rs1983658	C	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:57,82:0.59:139
chr1	40781175	rs111700365	CG	C	5459.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:179,145:0.45:324
chr1	40781177	rs115504008	A	C	5468.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:180,146:0.45:326
chr1	40840268	.	C	CGTGCGT	360	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=3;MGOF=15;MMLQ=21;MQ=59.39;NF=15;NR=19;PP=360;QD=10.6764705882;SC=TGCGTGCGTGCGTGTGTGTGT;SbPval=0.27;Source=Platypus;TC=53;TCF=19;TCR=34;TR=34;WE=40840280;WS=40840256;set=Platypus	GT:AD:AF:DP	1/0:19,34:0.64:53
chr1	40840270	rs10645094	T	TGC	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=1.280;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr1	40840296	.	T	TGTGA	945.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=8.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=1.759;SOR=2.158;set=HC	GT:AD:AF:DP	0/1:21,54:0.72:75
chr1	40859213	rs35913943	CTT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.544;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	40879808	rs209605	G	T	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	40881041	rs209606	C	G	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	40923019	rs2272994	G	A	4561.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:174,217:0.55:391
chr1	40955156	rs10789144	A	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.324;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	41094320	rs2076334	C	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	41095171	rs2076333	A	G	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	41101572	rs2253835	A	G	1742.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	41107239	rs7535398	G	A	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:66,48:0.42:114
chr1	41107360	rs491619	T	C	16962.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr1	41107612	rs2076332	C	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr1	41204569	rs1057925	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	41215075	rs3818758	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.754;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	41228898	rs4660454	G	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	41229180	rs4660455	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	41235177	rs10889608	G	C	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-1.371;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr1	41235946	rs3754176	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	41284366	rs2361660	G	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr1	41284406	rs2361659	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	41285087	rs4660468	T	C	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:315,290:0.48:605
chr1	41296828	rs34287852	T	G	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:204,185:0.48:389
chr1	41298652	rs913378	T	C	10339.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr1	41300536	rs34480358	G	A	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr1	41300682	rs55925184	C	T	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:262,233:0.47:495
chr1	41453286	rs5773721	GT	G	4417.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	41456808	rs111518708	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.456;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:66,16:0.20:82
chr1	41540853	rs2011981	A	T	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	41540861	rs2011982	T	C	5507.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	41618442	rs213768	A	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	41848060	rs12092825	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=2.939;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	41848296	rs4359027	G	A	3498.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:166,173:0.51:339
chr1	41949595	rs2759256	G	A	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	41949628	rs2759257	A	C	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	41950312	rs2984691	T	C	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	41976017	rs678110	C	T	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.346;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr1	41976328	rs9439043	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	41978566	rs2991344	T	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	41978825	rs2483689	C	G	4884.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	41979156	rs615177	A	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	41983912	rs2810547	C	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr1	41990686	rs116807289	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	42046613	rs12132697	G	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr1	42046812	rs2810565	C	T	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	42048745	rs2810566	T	C	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	42049032	rs2984694	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	42049140	rs2475842	C	G	7141.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr1	42050366	rs2146315	C	T	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:88,52:0.37:140
chr1	42619152	rs2297567	C	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:75,55:0.42:130
chr1	42619377	rs2297566	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	42629040	rs2232224	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	42630364	rs2071499	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr1	42647536	rs143175153	TCACA	T	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	42647568	rs150006846	ACT	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-1.723;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	42654364	rs554500	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr1	42656868	rs1085252	C	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	42693597	rs343376	A	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:104,65:0.38:169
chr1	42846786	rs11210626	G	C	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.277;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:53,39:0.42:92
chr1	42880516	rs1055055	T	C	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr1	42898843	rs1034268	A	G	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr1	42915527	rs12142723	C	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	43002199	rs372826618	AAG	A	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.005;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:195,28:0.13:223
chr1	43055243	rs10789417	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	43110276	rs7523056	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	43124701	rs6600419	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr1	43124859	rs3738494	C	T	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:118,100:0.46:218
chr1	43126733	rs3768025	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr1	43126766	rs3768026	C	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr1	43132393	rs35844708	G	GA	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	43162182	.	G	GC	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.776;QD=3.99;ReadPosRankSum=-0.879;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	43212431	rs4660662	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,130:0.99:131
chr1	43213499	rs3738499	C	T	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	43228189	rs2816593	T	A	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	43239395	rs2760075	G	A	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	43296173	rs33950227	C	T	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.295;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:97,106:0.52:203
chr1	43296195	rs33953680	C	T	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	43300663	rs4660672	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	43300921	rs4660673	C	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	43301454	rs34475455	G	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:44,78:0.64:122
chr1	43392250	rs4658	C	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	43393245	rs11282849	G	GGGTGAGAAAT	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	43395635	rs2229682	C	T	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	43396414	rs11537641	G	A	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr1	43408966	rs1385129	G	A	9741.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr1	43424519	rs11537640	T	G	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	43630229	rs12135134	G	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:54,45:0.45:99
chr1	43649393	rs663336	T	C	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:70,48:0.41:118
chr1	43649508	rs663824	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=1.808;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr1	43650741	rs598336	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr1	43652222	rs1976285	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	43652281	.	CAA	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=0.108;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	43652369	rs6413971	T	C	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr1	43663376	rs513009	A	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.029;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:57,57:0.50:114
chr1	43672636	rs11210812	T	G	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr1	43675467	rs2453412	G	A	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:126,150:0.54:276
chr1	43680855	rs4233492	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	43681184	rs612626	C	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr1	43687702	rs79533911	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	43692506	rs143693731	G	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr1	43697968	rs3120045	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	43699813	rs3820588	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	43699935	rs2477561	C	T	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	43700140	rs2483688	A	G	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:208,187:0.47:395
chr1	43738340	rs10890247	A	C	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr1	43771016	rs3831248	TA	T	2974.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:149,110:0.42:259
chr1	43771090	rs3120044	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr1	43773033	rs2275180	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr1	43774437	rs1467809	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	43774495	rs2282225	G	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr1	43774878	rs2282226	C	T	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr1	43777852	rs1999595	C	T	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	43779564	rs3120276	T	C	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:138,134:0.49:272
chr1	43779869	rs2991990	T	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr1	43782846	rs1198982	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr1	43784956	rs1199039	A	G	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:50,76:0.60:126
chr1	43812075	rs1760670	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	43814864	rs839995	T	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr1	43825644	rs839763	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr1	43826312	rs710251	C	A	13925.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr1	43855546	rs839752	A	G	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:155,166:0.52:321
chr1	43855578	rs839753	G	C	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	43869235	rs710249	G	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	43886494	rs2782643	C	T	2482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-0.328;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:152,127:0.46:279
chr1	43887146	rs2782644	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	43888602	rs2782645	G	A	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:70,66:0.49:136
chr1	43890737	.	C	G	3521.77	.	AC=1;AF=0.500;AN=2;DP=300;set=Intersection	GT:AD:AF:DP	0/1:134,164:0.55:298
chr1	43892189	rs2782646	G	A	7566.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:378,370:0.49:748
chr1	43901011	rs2039531	A	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,72:0.54:133
chr1	43903589	rs2782648	G	T	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,38:0.42:91
chr1	43906896	rs2027130	A	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr1	43907092	rs12407785	G	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:62,79:0.56:141
chr1	43909265	rs2255632	T	C	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:142,155:0.52:297
chr1	43912590	rs2782650	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr1	43916642	rs6954	T	C	9385.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	43917409	rs2251804	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:77,53:0.41:130
chr1	43917637	rs2251802	G	A	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:115,131:0.53:246
chr1	43919413	rs6692611	A	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	43919486	rs182798940	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.391;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=0.273;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr1	43998397	rs11350891	GT	G	806.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	44035472	rs943513	G	A	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,53:0.62:85
chr1	44070691	rs17371903	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr1	44071221	rs631248	G	A	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:110,84:0.43:194
chr1	44072420	rs539096	A	G	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:66,68:0.51:134
chr1	44075227	rs517622	T	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	44078384	rs499257	T	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr1	44078602	rs3791151	C	A	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:67,102:0.60:169
chr1	44079411	rs603542	T	C	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:137,117:0.46:254
chr1	44083110	rs571862	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr1	44083507	rs641365	T	C	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:132,143:0.52:275
chr1	44083519	rs641351	G	A	2615.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,125:0.50:251
chr1	44084739	rs1143701	C	T	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:169,146:0.46:315
chr1	44086080	rs568639	T	C	3297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-1.992;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:200,167:0.46:367
chr1	44086831	rs1143702	C	T	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:155,155:0.50:310
chr1	44087001	.	C	T	526.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr1	44087496	rs673485	C	T	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr1	44121557	rs2274465	C	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	44137257	rs586339	C	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr1	44280381	rs37468	A	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	44290530	rs37458	A	G	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr1	44303786	.	C	CAAAAAAAAAA	716.73	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.34;QD=89.59;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	44323736	rs2906465	T	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	44386305	rs3120802	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	44386615	rs3120803	A	G	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	44395786	rs2108202	C	T	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	44401384	rs2242637	A	G	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	44415415	rs2240447	C	T	12199.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	44426025	rs2301993	G	A	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	44426948	rs2906596	G	A	12103.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr1	44432500	rs4660759	C	G	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	44442521	rs12410334	A	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	44451115	rs61096284	A	AGG	820.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,29:0.37:78
chr1	44457215	rs12403025	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	44457305	rs12403036	G	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	44457739	rs11376967	T	TC	927.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	44594966	rs2485653	G	A	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr1	44595113	rs2429051	G	C	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:177,133:0.43:310
chr1	44595410	rs2485652	A	G	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:135,161:0.54:296
chr1	44595426	rs2429050	G	A	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:142,170:0.54:312
chr1	44595995	rs35084281	G	GC	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr1	44679556	rs803369	A	G	2062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.572;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.024;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:114,104:0.48:218
chr1	44686322	rs12419	T	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr1	44788398	rs161721	A	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	45170012	rs12088087	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	45225149	rs139235533	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	45362992	rs263978	T	C	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:58,58:0.50:116
chr1	45470130	rs7528534	T	C	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	45472798	rs147908761	TTGTGTGTG	T,TTG	1407.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/1:0.95:41
chr1	45474157	rs2298006	G	A	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	45475566	rs6429552	A	G	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	45479874	rs6698485	G	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	45504720	rs7551698	G	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	45524213	rs3738246	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	45793086	.	G	A	2193.77	.	AC=1;AF=0.500;AN=2;DP=204;set=Intersection	GT:AD:AF:DP	0/1:98,103:0.51:201
chr1	45796269	rs3219493	G	C	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	45796354	rs3219492	G	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	45797505	rs3219489	C	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr1	45798555	rs3219487	T	C	12458.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	45805566	rs3219468	G	C	16395.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,623:1.00:623
chr1	45806933	rs61789859	G	A	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:61,83:0.58:144
chr1	45813441	rs2298018	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	45813820	rs2153607	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	45864695	rs7532762	C	A	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	45887288	rs3790582	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	45961955	rs937290	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	45965307	rs12568144	G	A	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:115,119:0.51:234
chr1	45965340	rs7546268	T	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr1	45973928	rs2275276	G	A	4384.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:210,215:0.51:425
chr1	45981512	rs2356559	T	C	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.248;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:94,82:0.47:176
chr1	46027355	rs512083	T	C	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-0.048;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:61,76:0.55:137
chr1	46032307	rs61751012	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr1	46050004	rs57257530	TTCGG	T	2098.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	46057144	rs2991981	A	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	46065998	rs3014211	T	C	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	46073489	rs2230657	G	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.735;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	46078630	rs2050376	A	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	46078854	rs2230658	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	46078884	rs2230659	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=26.46;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	46080530	rs2991985	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr1	46080947	rs1972410	A	C	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	46081940	rs2356581	T	A	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	46081960	rs2253862	C	T	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	46082431	rs2991988	C	A	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	46083706	rs41310432	C	G	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.126;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:103,81:0.44:184
chr1	46085852	rs2275085	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	46085879	rs2275086	C	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	46086077	rs3014246	C	T	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	46086329	rs11590549	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr1	46086812	rs115882398	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr1	46086913	rs3014245	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	46087577	rs3014242	G	A	11644.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr1	46087879	rs3014241	A	G	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	46089225	rs3014240	C	G	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	46124663	rs6671802	A	G	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:92,94:0.51:186
chr1	46347875	rs56242896	A	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.31;QD=43.94;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	46347878	rs201525530	AT	A	1578.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.69;QD=42.67;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	46347910	rs6665193	G	A	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	46379518	rs4256763	A	G	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	46424964	rs4460582	G	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	46466721	rs11589562	T	C	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr1	46476587	rs11211247	T	G	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	46485548	rs946529	G	T	229.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	46485562	rs946528	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	46487552	rs2275426	G	A	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	46487560	rs946524	A	G	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.45;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	46491635	rs785478	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	46493460	rs1707336	T	G	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	46495434	rs2236560	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	46496709	rs925524	A	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	46498375	rs1622208	A	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	46499526	rs1052607	A	G	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:137,114:0.45:251
chr1	46500251	rs33931638	G	A	4878.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:233,228:0.49:461
chr1	46511487	rs2297883	G	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	46521517	rs785468	G	A	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	46521559	rs785467	A	T	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	46546208	rs1768803	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	46598269	rs1707304	C	A	15786.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	46598273	rs1707303	A	C	16090.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr1	46641741	rs11211261	A	G	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	46655158	rs6659553	T	C	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	46806393	rs41293273	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.58;ReadPosRankSum=-0.573;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	46806429	rs41293275	A	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.386;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=2.134;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr1	46806480	rs17361749	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr1	46806550	rs41293277	C	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=2.190;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:86,56:0.39:142
chr1	46806703	rs10489769	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:64,48:0.43:112
chr1	46810405	rs79697925	TG	T	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr1	46810530	rs3737744	A	G	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:86,68:0.44:154
chr1	46810670	rs17361763	T	C	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:145,130:0.47:275
chr1	46810842	rs6684274	C	T	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr1	46812444	rs17357676	A	G	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	46812519	rs17361791	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr1	46818442	rs41294478	G	A	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.12;ReadPosRankSum=0.540;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	46818452	rs17413701	A	G	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=0.778;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr1	46818479	rs7515598	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	46818508	rs7529674	T	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr1	46826587	rs55887761	C	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	46827214	rs324414	A	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	46827485	rs1053624	C	T	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.730;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:64,71:0.53:135
chr1	46860237	rs72890727	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	46871986	rs324419	T	C	11899.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr1	46877180	rs6662982	G	A	2395.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:127,114:0.47:241
chr1	46976837	rs1886116	C	T	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:231,252:0.52:483
chr1	47013180	rs10890404	A	G	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr1	47013364	rs1258041	T	C	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	47014821	.	A	AAAAAG	2850.73	.	AC=2;AF=1.00;AN=2;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.61;QD=39.59;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	47059934	rs1258021	T	C	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	47099346	rs723333	C	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	47108828	rs736188	T	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	47109089	rs1745377	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr1	47110668	rs1258054	G	C	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	47110712	rs1258053	C	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	47110766	rs3215990	G	GC	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	47118067	rs620913	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	47118096	rs2289446	C	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr1	47118168	rs2289447	C	T	3802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.841;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:125,102:0.45:227
chr1	47118189	rs620431	G	T	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:155,128:0.45:283
chr1	47123898	rs71697665	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.65;ReadPosRankSum=1.565;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	47124204	rs34308534	C	CA	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	47124479	rs611468	A	G	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr1	47130873	rs594118	A	G	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr1	47133811	rs11211337	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	47138444	rs616249	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	47138819	rs614486	T	G	6555.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:313,308:0.50:621
chr1	47139103	rs1025806	C	T	5335.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:214,248:0.54:462
chr1	47154272	rs2304745	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	47155462	rs2241862	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr1	47182206	rs3737731	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr1	47276728	rs2297812	G	C	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:119,91:0.43:210
chr1	47348573	rs202002284	C	G	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=16.48;ReadPosRankSum=1.210;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	47348578	rs199844718	T	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=17.80;ReadPosRankSum=0.795;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	47351034	rs5003006	T	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	47351052	rs5003005	A	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	47395973	rs1126743	G	A	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	47398743	rs3890011	G	C	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=26.13;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	47400059	rs71500102	A	G	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.08;QD=30.36;SOR=1.812;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr1	47401424	rs2269231	A	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.13;QD=28.26;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	47402487	.	TTGTGTG	T,TTG	6104.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=220;set=Intersection	GT:AF:DP	1/2:0.23,0.76:158
chr1	47571943	rs10534549	CT	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.681;QD=1.27;ReadPosRankSum=-0.584;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:171,61:0.26:232
chr1	47652870	rs10549554	CCTTGAG	CAG,C	1209.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=65;set=Intersection	GT:AF:DP	0/1:0.50:64
chr1	47652875	rs10549555	AGC	A	1301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.34;ReadPosRankSum=-0.631;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	47652877	.	CCT	ACA	1800	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=20;NR=1;PP=1800;QD=88.2603749934;SC=TTCCCTTGAGCCTCAGGGGGA;SbPval=0.97;Source=Platypus;TC=65;TCF=54;TCR=11;TR=21;WE=47652887;WS=47652860;set=Platypus	GT:AD:AF:DP	1/0:44,21:0.32:65
chr1	47652879	rs60327556	T	A	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.946;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=-1.352;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr1	47655816	rs2248907	A	G	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	47685455	rs927462	T	C	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	47689842	rs34087210	C	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr1	47691090	rs2273834	T	C	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	47691568	rs145295250	GCAGA	G	2959.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr1	47717189	rs2758735	A	G	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:181,138:0.43:319
chr1	47735280	rs2742104	T	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	47753405	rs12125261	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr1	47765490	rs9436838	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	47767141	rs6689687	C	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	47767914	rs3125630	G	A	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:100,107:0.52:207
chr1	47770441	rs3122615	A	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	47770466	rs3122616	T	C	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	47770786	rs6692734	T	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	47799639	rs7543016	G	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	47799803	rs72553939	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	47841038	rs3214951	G	GA	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	47841104	rs2306470	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=2.056;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	47841109	rs2253511	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	47842431	rs3125648	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	47883019	rs6666370	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	47883024	rs2820969	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	47904668	rs3046924	T	TCCGCAC	13530.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	47904909	rs2405913	G	C	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	48260116	rs3738314	C	T	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr1	48690680	.	C	G	1401.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:48,56:0.54:104
chr1	48697733	rs212991	T	G	9412.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	48697751	rs61997212	C	T	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:163,138:0.46:301
chr1	48697928	rs1004833	T	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	48707838	rs705430	A	G	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	48764419	rs1056042	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:100,63:0.39:163
chr1	48902552	rs78784453	G	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr1	48902977	rs2261674	G	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	48937691	rs2275309	A	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=2.732;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr1	49052933	rs2803277	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	49056695	rs7543402	T	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.069;QD=8.62;ReadPosRankSum=-2.086;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr1	49056766	.	C	CCCG	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=0.765;QD=15.86;ReadPosRankSum=-0.936;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	49056772	rs71501782	A	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=0.674;QD=15.60;ReadPosRankSum=-1.465;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	49100332	rs319983	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	49113319	rs319953	T	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	49128720	rs320007	C	T	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	49193394	rs1385152	G	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	49224584	rs1128934	G	T	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	49332724	rs6703833	A	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	49332969	rs61785986	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	49711281	rs7528510	C	T	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	50331725	rs10788920	T	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	50661411	rs2480683	C	T	10083.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr1	50666515	rs2494876	C	T	3645.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	50884778	rs2746610	G	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=25.25;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	50956212	rs149582773	C	CAAATACAGTGG	9182.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr1	50957509	rs1149790	A	T	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	51078089	rs17387761	G	A	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.975;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:56,57:0.50:113
chr1	51078223	rs74738164	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr1	51439506	rs66462949	T	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	51567930	rs72692268	A	G	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:78,89:0.53:167
chr1	51753812	rs635590	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr1	51754726	rs12734773	C	T	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.859;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr1	51761602	rs2297182	G	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	51767432	rs41287292	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr1	51767711	.	G	A	2346.77	.	AC=1;AF=0.500;AN=2;DP=191;set=Intersection	GT:AD:AF:DP	0/1:83,106:0.56:189
chr1	51767912	rs375305601	GC	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.246;SOR=0.041;set=HC	GT:AD:AF:DP	0/1:83,17:0.17:100
chr1	51777748	rs7521849	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	51808567	rs12072333	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	51826921	rs17567	T	C	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:132,130:0.50:262
chr1	51831570	rs77742485	T	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:85,88:0.51:173
chr1	51869004	rs74898383	T	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:54,43:0.44:97
chr1	51871438	rs10529789	G	GACTC	458.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	51873951	rs1065754	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	51905949	.	CTG	C	630.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	51905956	.	T	C	619.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	51913564	rs79437178	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	51913572	rs112593986	T	TA	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;MQ=60.47;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	51924159	rs56167325	G	A	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.712;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	51924226	rs6672300	C	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.942;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	51926978	rs72696157	C	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-0.428;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr1	51929504	rs5774101	TA	T	563.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr1	51931089	rs56326822	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr1	51938639	rs41292535	G	A	2974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=3.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.352;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:160,147:0.48:307
chr1	51955827	rs60698990	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=-1.691;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	51956050	rs60294217	T	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	51956057	.	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-2.556;QD=1.93;ReadPosRankSum=-0.529;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,2:0.12:17
chr1	51956065	rs60723428	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr1	51956080	.	A	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-1.741;QD=2.98;ReadPosRankSum=0.897;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr1	51985020	.	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.97;ReadPosRankSum=-0.647;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	51985042	rs2275004	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr1	52179818	.	G	GT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=9.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.045;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr1	52266242	rs8375	G	A	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,77:0.48:159
chr1	52279650	rs2982846	T	G	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-1.098;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chr1	52289220	rs67976949	TGTATTAAGGTCAA	T	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr1	52290984	rs11205896	T	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-1.702;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	52293570	rs2077725	G	A	2020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=-0.209;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:70,96:0.58:166
chr1	52293638	rs706495	G	A	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	52303005	rs12944	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr1	52306063	rs35723519	ATCT	A	2065.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr1	52344414	rs736756	A	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr1	52402856	rs10888741	T	G	1305.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	52402956	rs10888742	G	A	4939.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	52489322	rs2783178	G	A	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	52490418	rs4926906	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	52517412	rs7529324	A	G	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	52520740	rs142456533	G	A	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:103,139:0.57:242
chr1	52761799	.	G	GTA	23	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.4999;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=1;PP=23;QD=34.0;SC=ATATGTATGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=1;WE=52761807;WS=52761789;set=Platypus	GT:AD:AF:DP	0/1:4,1:0.20:5
chr1	52820226	rs2820334	G	A	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	52820460	rs41312652	C	T	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr1	52851729	.	G	A	25	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=25;QD=29.8856062736;SC=GAGAGGTGGTGAATTCCTCTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=52851737;WS=52851719;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	52878300	rs4319263	T	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	52882406	rs6677047	A	G	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	52882512	.	T	G	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=21.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.789;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr1	52882515	.	T	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=18.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.668;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr1	52947711	rs17107242	T	C	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	52959245	.	T	TA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.526;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr1	52961339	rs56251001	C	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	53153432	rs443751	T	C	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:95,120:0.56:215
chr1	53192187	rs269298	C	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	53262151	rs56078509	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr1	53308665	rs532242	C	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	53320274	rs480299	G	T	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	53323492	rs10788945	C	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	53333116	rs557847	A	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	53364976	rs576891	A	G	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	53387379	rs7552139	G	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	53416721	rs35364355	G	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr1	53543112	rs946590	C	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	53543312	rs12745973	C	T	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:123,142:0.54:265
chr1	53544439	rs1288388	G	A	8496.77	.	AC=1;AF=0.500;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	0/1:438,423:0.49:861
chr1	53544578	rs11206088	T	C	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:94,87:0.48:181
chr1	53544597	rs1288389	T	C	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	53553702	rs1288400	A	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	53553754	rs1288401	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.843;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:56,42:0.43:98
chr1	53554533	rs35707549	A	AT	2953.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:118,98:0.45:216
chr1	53555783	rs1288403	A	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	53558270	rs1288406	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:123,81:0.40:204
chr1	53559310	rs11206091	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr1	53568980	rs2242274	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr1	53571288	rs1288422	C	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	53574123	rs1769289	C	T	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	53608133	rs3737990	C	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:123,86:0.41:209
chr1	53684525	rs436887	C	G	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=-0.188;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:41,65:0.61:106
chr1	53686383	rs1679913	C	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr1	53699093	rs140348522	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	53738386	rs41294756	G	A	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:148,144:0.49:292
chr1	53738419	rs41294758	C	T	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:104,75:0.42:179
chr1	53746473	rs2297658	T	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr1	53755117	rs13306535	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr1	53792651	rs3820198	A	C	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	53793510	.	CTG	C	40.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.889;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:80,8:0.09:88
chr1	53793511	rs4926972	T	C	1682.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:8,78:0.91:86
chr1	53972205	rs2296758	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr1	53974987	rs10749691	G	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-0.134;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:26,37:0.59:63
chr1	53980389	rs41313369	C	T	1260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=1.521;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:63,62:0.50:125
chr1	53990321	rs541224	C	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr1	54060016	rs35227000	G	C	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:107,112:0.51:219
chr1	54060248	rs4307514	T	C	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,96:0.53:182
chr1	54258880	rs2273139	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,49:0.45:108
chr1	54284551	rs72662323	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	54284814	rs12089209	C	T	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.891;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:39,31:0.44:70
chr1	54298297	rs72662336	T	C	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=1.694;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr1	54370306	rs2294512	G	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	54387577	rs12090789	T	C	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	54389471	rs12067895	C	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	54389517	rs3830768	G	GT	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	54395673	rs56847995	CA	C	272.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=1.022;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr1	54432019	rs2294514	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	54476147	rs17109656	G	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	54483636	rs74085128	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.91;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	54483641	rs74085130	C	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.45;SOR=1.420;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	54502264	.	T	TGGTCTAAG	2894	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=28;MQ=60.42;NF=17;NR=16;PP=2894;QD=20;SC=AGTCTTCAAATGGTAAGAATT;SbPval=0.18;Source=Platypus;TC=94;TCF=37;TCR=57;TR=33;WE=54502276;WS=54502254;set=Platypus	GT:AD:AF:DP	0/1:61,33:0.35:94
chr1	54502266	rs201845711	G	GTC	2874.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=-0.523;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:93,72:0.44:165
chr1	54502268	.	A	T	2708	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.31;NF=33;NR=19;PP=2708;QD=20;SC=TTCAAATGGTAAGAATTAAAT;SbPval=0.67;Source=Platypus;TC=150;TCF=90;TCR=60;TR=52;WE=54502276;WS=54502254;set=Platypus	GT:AD:AF:DP	0/1:98,52:0.35:150
chr1	54502268	.	A	AAGGGTT	3104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.619;QD=17.84;ReadPosRankSum=-0.164;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:98,76:0.44:174
chr1	54507506	rs79481007	C	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-1.002;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	54511200	rs41538044	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr1	54519800	rs74085143	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.141;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr1	54561916	rs7555099	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,54:0.48:112
chr1	54605095	rs625370	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	54605107	rs636426	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	54605177	rs636533	G	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.870;QD=7.98;ReadPosRankSum=-0.760;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:41,33:0.45:74
chr1	54605318	rs3841798	T	TG	1353.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr1	54605520	rs648573	T	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:118,108:0.48:226
chr1	54606804	rs3766465	C	T	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	54607051	rs671103	A	G	10660.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	54607157	rs671539	G	A	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	54618435	rs7528345	A	T	4845.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:275,243:0.47:518
chr1	54636977	rs10493175	T	C	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,62:0.58:106
chr1	54637167	rs625643	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	54644859	rs61738851	C	T	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-1.281;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:66,57:0.46:123
chr1	54653291	rs61775225	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr1	54661150	rs946448	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr1	54661234	rs79743819	C	T	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=2.558;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:52,44:0.46:96
chr1	54681920	rs13571	G	C	4047.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	54686374	rs612711	T	C	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:136,133:0.49:269
chr1	54686464	rs613158	C	T	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:130,139:0.52:269
chr1	54690954	rs3088379	T	C	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:110,134:0.55:244
chr1	54694214	rs2297026	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	54706733	rs2297027	A	G	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:156,125:0.44:281
chr1	55064898	rs112040476	A	T	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.43;QD=23.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	55074922	rs2289016	G	A	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	55078046	rs1655528	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	55080612	rs147772009	GGTGT	G	2710.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	55080629	rs1702015	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.56;QD=44.55;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	55118566	rs1655520	C	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	55119515	rs1655519	T	G	18669.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr1	55119546	rs1655518	A	G	21515.77	.	AC=2;AF=1.00;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	1/1:0,796:1.00:796
chr1	55130972	rs471724	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr1	55134379	rs627095	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr1	55134487	rs478513	G	A	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:158,151:0.49:309
chr1	55136067	rs2251719	T	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	55136529	rs480963	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:126,89:0.41:215
chr1	55138673	rs564400	C	T	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	55139618	rs571199	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr1	55139741	rs570218	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	55167773	rs646356	T	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr1	55172076	.	G	T	2652.77	.	AC=1;AF=0.500;AN=2;DP=230;set=Intersection	GT:AD:AF:DP	0/1:102,128:0.56:230
chr1	55182300	rs1147990	T	A	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-0.924;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr1	55197149	rs3815226	T	C	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:140,160:0.53:300
chr1	55199420	.	ATTTTTTTT	A	445.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr1	55247097	rs2286203	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,60:0.51:117
chr1	55248074	rs12144325	A	G	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:204,183:0.47:387
chr1	55250479	rs78948067	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,61:0.48:128
chr1	55251689	rs586462	T	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	55252514	rs11581256	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	55253346	rs2269999	G	A	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr1	55253575	rs665118	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	55266845	rs1147984	C	T	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr1	55271774	rs757581	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	55272643	rs6666034	C	G	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:215,197:0.48:412
chr1	55273580	rs9782980	G	T	1559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=1.688;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:52,76:0.59:128
chr1	55277430	rs10788986	T	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr1	55277599	rs600499	T	C	8908.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	55279345	rs149536795	CCCGGCCT	C	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	55282556	rs733168	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr1	55318108	rs667222	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,70:0.50:140
chr1	55319008	rs631749	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr1	55319902	rs718265	A	G	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr1	55319935	rs141309546	GA	G	775.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr1	55330966	rs611057	T	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	55336950	rs608458	C	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	55446664	rs2253467	G	C	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=2.548;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	55446671	rs2253466	C	T	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=2.255;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	55446697	rs2253465	G	A	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr1	55457710	rs2500326	G	A	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	55457815	rs2495513	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	55464743	rs2500340	T	C	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	55464790	rs2500341	C	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	55473043	rs6687801	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	55474262	rs33938617	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:107,88:0.45:195
chr1	55474325	rs6682884	A	C	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:128,118:0.48:246
chr1	55474476	rs4339899	C	G	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	55505732	rs2495482	A	G	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	55516781	rs599037	G	T	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	55518160	rs11806638	C	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr1	55518166	rs625619	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr1	55518198	rs7552350	C	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	55518316	rs2483205	C	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.378;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	55518528	rs494198	C	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	55521899	rs201349983	GGGGCGGA	G	505.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	55523033	rs509504	A	G	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	55524197	rs540796	A	G	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-1.495;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	55524237	rs562556	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=0.982;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	55527323	rs630431	G	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr1	55529187	rs505151	G	A	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	55538385	rs654674	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	55541174	rs487230	A	G	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-1.138;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:59,41:0.41:100
chr1	55541298	.	GACAACAACA	G	227.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	55546895	rs683880	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	55548991	rs61739739	C	T	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:87,97:0.53:184
chr1	55549374	rs6588545	T	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	55555285	rs548852	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr1	55557859	rs34673217	A	ATT	858.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	55557864	rs3736992	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.920;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	55562125	rs580485	G	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	55564026	rs2274539	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr1	55565598	rs17111621	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	55566411	rs67540253	TTAGTC	T	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=-0.154;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr1	55567143	rs1165282	T	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	55567410	rs615652	A	G	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	55572867	rs594226	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr1	55575670	rs534741	A	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	55591283	rs17111657	C	A	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:92,83:0.47:175
chr1	55614036	rs34030121	CAT	C	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=1.169;QD=21.69;ReadPosRankSum=-0.859;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	55631650	rs17111697	G	T	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:76,101:0.57:177
chr1	55638075	rs1165222	G	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	55643837	rs11350615	TA	T	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	57111169	rs61772962	C	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	57158293	rs7419053	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	57170229	rs932447	T	C	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	57185818	rs857141	A	G	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=1.031;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:42,25:0.37:67
chr1	57209695	rs1156845	T	C	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,39:0.43:91
chr1	57219631	rs11404547	G	GA	337.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	57221553	rs1774808	GA	TG	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	57224460	rs857103	G	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	57340727	rs652785	C	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr1	57372591	rs619545	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr1	57395228	rs61737417	G	A	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr1	57395251	rs605648	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:104,104:0.50:208
chr1	57397301	rs683824	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr1	57422484	rs1013579	C	T	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	57476377	rs141647150	G	A	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.075;QD=9.53;ReadPosRankSum=1.458;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:50,45:0.47:95
chr1	57477034	rs697580	G	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	57480424	rs944923	C	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	57499275	rs17417626	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	57528772	rs1261611	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	57535198	rs3738556	C	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr1	58946855	rs150425165	A	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr1	58946947	rs338224	T	C	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	58971831	rs3087585	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:106,94:0.47:200
chr1	58971940	rs11207245	C	A	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr1	58996427	rs2271005	C	T	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	58999651	rs17117678	T	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr1	59000056	rs17096876	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	59002221	rs7537470	T	C	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	59002282	rs17117699	A	C	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:93,90:0.49:183
chr1	59002460	rs7548097	A	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr1	59002525	rs6587829	G	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	59004438	rs41296155	A	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr1	59004617	rs17117720	G	A	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:101,87:0.46:188
chr1	59004979	rs902925	C	T	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	59041809	rs41311174	C	T	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:111,103:0.48:214
chr1	59042181	rs14008	G	T	4894.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:252,239:0.49:491
chr1	59042311	rs35075952	T	G	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:124,121:0.49:245
chr1	59042882	rs232835	T	G	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	59125894	rs12092264	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	59125899	rs12082192	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	59126676	rs232779	A	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	59127024	rs4912364	T	G	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	59131311	rs232790	G	T	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	59134586	rs11207284	G	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	59134607	rs57822474	C	CAG	5298.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	59137783	rs539141	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	59139223	rs2064370	C	G	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	59142713	rs579110	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	59147420	rs11207292	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	59147926	rs12139511	T	C	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	59150941	rs2206764	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	59150997	rs5774421	TA	T	230.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.38;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr1	59156155	rs12076049	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	59158632	rs12097333	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	59160724	rs66629118	TA	T	198.50	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:3,16:0.84:19
chr1	59165838	rs11207297	T	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	59247993	rs11688	C	T	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:176,161:0.48:337
chr1	59248813	rs2760499	G	C	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	60228310	rs10626387	T	TTC	5349.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	60280749	rs113730234	GT	G	1661.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	60299820	rs618716	C	G	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	60312676	rs142054826	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	60466814	rs626251	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	60466911	rs67112814	ACAG	A	1219.06	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:2,31:0.94:33
chr1	60475930	rs616949	C	G	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	60505578	rs680390	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	61548344	rs113913435	TTC	T	851.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.611;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:216,56:0.21:272
chr1	61818381	rs11587835	C	T	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=26.77;SOR=1.337;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	61818422	rs7528918	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	61818428	rs10544967	TAC	T	1191.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	61872215	.	GCC	G	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=-1.035;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	61872541	rs10889221	G	A	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr1	61892301	rs5774558	T	TG	7132.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	61921185	rs11423561	A	AT	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.121;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr1	62149237	rs12134205	C	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	62160525	rs149200386	T	TTA	397.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:2,10:0.83:12
chr1	62160542	rs1151765	A	G	406.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:2,9:0.82:11
chr1	62231924	rs141761262	T	TTGA	1017.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	62232031	rs1286835	C	T	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.84;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	62232130	rs11207827	T	C	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	62261168	rs7516332	A	G	2962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.186;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:132,150:0.53:282
chr1	62329885	rs35853578	AT	A	610.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	62330080	rs2799627	T	G	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr1	62340855	rs12753462	G	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	62341157	rs4598521	T	C	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	62350123	rs72229771	GTTTTT	G	655.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	62365217	rs1412622	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=-0.082;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr1	62365428	rs5774578	G	GA	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr1	62374267	rs2151122	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	62380124	rs4915789	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr1	62380195	rs2482858	A	G	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.581;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:63,69:0.52:132
chr1	62380223	rs11585422	G	T	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:114,106:0.48:220
chr1	62380270	rs1134766	C	T	7740.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	62380298	rs1056513	G	A	3293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-0.329;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:142,169:0.54:311
chr1	62393394	rs2251182	A	G	8952.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	62417925	.	T	TGA,TGAGAGAGA	169	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=23;MMLQ=26;MQ=59.76;NF=10,10;NR=1,1;PP=168,169;QD=15.6363636364;SC=GAACAAAATCTGAGAGAGAGA;SbPval=0.93;Source=Platypus;TC=18;TCF=14;TCR=4;TR=11,11;WE=62417933;WS=62417915;set=Platypus	GT:AF:DP	0/1:0.61:18
chr1	62417951	.	A	AG	790.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=34.38;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	62417952	.	A	G	710	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=4;HapScore=1;MGOF=18;MMLQ=28;MQ=60.28;NF=27;NR=4;PP=710;QD=24.0248778241;SC=GAGAGAGAGAAAAATAGGCCC;SbPval=0.56;Source=Platypus;TC=31;TCF=27;TCR=4;TR=31;WE=62417960;WS=62417942;set=Platypus	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	62417952	rs34366135	A	AG,AGAGAGAG	720.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;QD=34.32;SOR=2.636;set=HC	GT:AD:AF:DP	1/2:0,13,8:0.62,0.38:21
chr1	62456014	rs1134767	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:72,63:0.47:135
chr1	62456048	rs12730210	G	A	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr1	62483415	rs140898379	A	G	228.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=2.620;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr1	62483599	rs34726576	G	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr1	62483657	rs7528797	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr1	62516683	rs2498982	G	C	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	62545085	rs17379217	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:45,54:0.55:99
chr1	62579672	rs1475564	A	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	62579823	rs1475563	G	A	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr1	62587014	rs4019806	T	TA	1966.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-0.299;SOR=0.564;set=HC	GT:AD:AF:DP	1/1:19,117:0.86:136
chr1	62593893	rs2481664	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	62594593	rs2476194	C	T	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	62594677	rs2481665	T	C	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:43,41:0.49:84
chr1	62614164	rs61777734	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr1	62644118	rs2481703	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	62644172	rs61775686	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	62672546	rs2457829	G	A	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	62673037	rs7542665	T	C	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:103,109:0.51:212
chr1	62673225	rs7533274	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr1	62673365	rs17379608	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	62675892	rs2481694	A	G	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.993;QD=10.07;ReadPosRankSum=-0.249;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:74,73:0.50:147
chr1	62676612	rs66958136	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,52:0.55:94
chr1	62677048	rs1056517	G	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-2.181;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	62677050	rs12137401	C	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.973;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr1	62713224	rs2941679	C	G	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	62728784	rs2666472	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	62728838	rs2258470	T	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	62728861	rs2260581	T	C	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	62728918	rs2262110	G	A	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	62729015	rs2262106	G	A	6638.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	62732421	rs11207949	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	62738904	rs7516290	T	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	62740446	rs2666506	T	C	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	62740449	rs2666507	T	C	7739.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	62939634	rs1168007	C	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	62943264	rs1168008	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	62945418	rs1183260	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	62953183	rs1168025	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	62960250	rs1168041	T	C	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	62961928	rs1168038	T	C	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	62970184	rs1168027	T	C	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	62973795	rs1184865	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	62976472	rs1168043	T	G	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	63001120	rs1168018	A	C	2608.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.231;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.09;ReadPosRankSum=-0.634;SOR=0.490;set=HC	GT:AD:AF:DP	1/1:1,99:0.99:100
chr1	63027411	rs5774610	AG	A	1514.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	63044388	.	C	CAA	58	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.33;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	63052344	rs56200511	CTA	C	1061.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr1	63085483	rs34571440	T	TA	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	63113511	rs746735	C	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	63113689	rs1168088	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	63113719	rs1168089	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	63128836	.	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.769;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr1	63300855	.	TA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.420;QD=2.05;ReadPosRankSum=-0.705;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	63871881	rs1012872	A	G	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	63872871	rs6588028	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr1	63879926	.	C	CTT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.908;QD=4.88;ReadPosRankSum=0.365;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr1	63881552	rs4630153	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr1	63912563	rs3838450	ACAATT	A	289.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	63920515	rs17319708	C	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.245;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	63975830	rs6588047	T	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	63975859	.	C	CA	46	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5694;HP=10;HapScore=3;MGOF=17;MMLQ=24;MQ=60.0;NF=2;NR=2;PP=46;QD=14.5;SC=AAAACTGTCTCAAAAAAAAAA;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=63975867;WS=63975849;set=Platypus	GT:AD:AF:DP	1/0:0,4:1.00:4
chr1	63988574	.	G	T	187.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	63991140	rs9436686	T	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	63991267	rs217478	T	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.354;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:65,35:0.35:100
chr1	63999087	rs217454	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr1	63999138	rs147278933	A	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:64,60:0.48:124
chr1	64015217	rs217485	G	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=1.334;QD=8.90;ReadPosRankSum=-0.157;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr1	64017262	rs35587501	GA	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.460;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	64097432	rs1126728	C	T	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:199,156:0.44:355
chr1	64100478	rs6588052	A	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-3.106;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr1	64102114	rs2269248	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	64114301	rs11208257	T	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr1	64117537	rs2269238	G	T	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:101,69:0.41:170
chr1	64475036	.	G	A	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=-0.867;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:136,111:0.45:247
chr1	64515379	rs1772626	C	T	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	64608329	rs2762833	G	T	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	64624612	rs4362024	G	A	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	64624842	rs6668545	A	G	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:142,144:0.50:286
chr1	64643277	rs7527017	C	T	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:176,171:0.49:347
chr1	64669567	rs2806529	A	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.953;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	64680682	rs825174	C	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr1	64698411	rs2029868	T	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	64707243	.	G	C	31	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=31;QD=32.8856062736;SC=CACATATCAAGTTAATGAGAA;SbPval=1.0;Source=Platypus;TC=5;TCF=4;TCR=1;TR=2;WE=64707251;WS=64707233;set=Platypus	GT:AD:AF:DP	1/0:3,2:0.40:5
chr1	64726414	rs705542	A	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr1	65016349	rs2164571	A	T	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	65045602	rs5774708	TA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.790;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	65068638	rs6665437	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	65095054	rs17383227	G	A	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=0.450;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:108,103:0.49:211
chr1	65099701	rs5774715	G	GT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.067;QD=5.35;ReadPosRankSum=-0.511;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr1	65099978	rs2118102	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	65107372	rs6664905	C	T	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	65113351	rs7534210	T	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	65113568	rs6588100	T	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	65119397	rs7518616	A	G	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-1.673;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:56,35:0.38:91
chr1	65124699	rs11208491	G	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.801;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	65131892	rs10713356	CA	C	562.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	65141676	rs67286337	TTAATAATAATAATAATAATAA	T,TTAATAATAATAATAA	1743.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.41;QD=35.59;SOR=1.508;set=HC	GT:AD:AF:DP	1/2:0,23,26:0.47,0.53:49
chr1	65830297	rs2296478	G	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	65830299	rs2296479	T	G	884.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=7.404;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.22;ReadPosRankSum=1.895;SOR=3.127;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr1	65830608	rs1570868	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	65844963	rs3818449	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	65858088	rs6588144	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	65858145	rs4325172	G	A	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=2.404;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr1	65860687	rs4582839	A	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:176,151:0.46:327
chr1	65867391	rs4592284	C	G	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr1	65874626	.	A	AT	24	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5764;HP=10;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=24;QD=12.0;SC=AAACAACAGGATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=0;TCR=7;TR=3;WE=65874634;WS=65874616;set=Platypus	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	65886398	rs3790435	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr1	65886448	rs3790434	T	C	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:104,110:0.51:214
chr1	65887013	rs12145690	A	C	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,73:0.44:166
chr1	65895578	.	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr1	66036441	rs1137100	A	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr1	66036501	rs2186248	G	T	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	66058513	rs1137101	A	G	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	66064293	rs3762273	A	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	66067109	rs1805134	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=-1.021;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr1	66083537	rs4655564	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.64;ReadPosRankSum=-0.921;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr1	66085574	rs3790439	T	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.302;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	66087301	rs4655743	G	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	66088701	rs12067936	C	A	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	66091656	rs145580828	ACACT	A	1254.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr1	66102257	rs1805096	G	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:88,110:0.56:198
chr1	66618316	rs202241040	TACACACACAC	T,TACACAC	484.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.29;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,8,5:0.62,0.38:13
chr1	66731886	rs6588193	G	C	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	66732386	rs6588194	G	A	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	66732529	rs6701329	A	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	66829262	rs783039	A	G	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	67098664	rs7531750	G	A	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.817;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.598;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr1	67101802	rs7546825	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	67109410	rs145373755	T	TTGTG	5923.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=19.75;ReadPosRankSum=-0.317;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:131,169:0.56:300
chr1	67109479	rs17129244	A	G	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr1	67126114	rs12094526	A	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:138,129:0.48:267
chr1	67136560	rs45467391	G	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.822;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	67136610	rs7540244	G	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr1	67142675	rs11208943	T	C	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:83,58:0.41:141
chr1	67142852	rs6689451	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr1	67145322	rs10889644	C	A	10465.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	67149706	rs10749764	G	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	67154730	rs35898963	CA	C	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.668;QD=9.93;ReadPosRankSum=-0.015;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:18,73:0.80:91
chr1	67155862	rs71660869	TCTC	T	9275.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	67160336	rs2146904	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	67160884	rs16844	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	67160938	rs34260051	T	TAAA	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=8.030;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=20.24;ReadPosRankSum=-0.365;SOR=2.595;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr1	67160981	rs1325268	C	T	5700.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	67194911	rs3078564	TTC	T	4150.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	67236097	rs1060575	A	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:114,77:0.40:191
chr1	67242087	rs3816989	G	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:114,90:0.44:204
chr1	67242200	rs7541120	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr1	67242225	rs35979624	CAT	C	839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.53;ReadPosRankSum=0.554;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr1	67242241	rs72451064	TGG	T	828.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.72;ReadPosRankSum=-0.857;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr1	67242243	rs148639880	G	GGT	214.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.163;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	67242253	rs370292327	T	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-2.146;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr1	67242260	rs35737694	GTA	G	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-2.063;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	67243024	rs2133173	C	A	2243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.552;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:115,114:0.50:229
chr1	67266756	rs549148	T	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	67288045	rs482082	C	T	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:142,111:0.44:253
chr1	67292473	rs34718535	A	AT	1608.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr1	67292478	rs36067642	T	A	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr1	67303303	rs6698076	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr1	67306054	rs11208966	C	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	67313793	rs79498460	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr1	67314162	rs79916150	C	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	67337285	rs1280338	C	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	67359195	rs3008881	T	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-1.471;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	67390416	rs3008858	G	C	8202.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	67390468	rs1886686	C	G	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	67396222	rs3008861	T	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	67425311	rs2985794	T	G	76.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	67425476	rs34957598	A	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	67425494	rs35465377	A	AT	117.74	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	67487119	rs2065002	C	A	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	67487374	rs66809311	TCCAACA	T	2628.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	67487393	rs72331230	CAG	C	208.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	67487395	rs11576752	G	C	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.929;MLEAC=1;MLEAF=0.500;MQ=64.04;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.000;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	67487401	rs11576753	G	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.03;QD=41.04;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	67487407	rs11208992	G	C	1143.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.63;QD=42.36;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	67512903	rs1024229	G	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	67512920	rs1024230	A	C	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	67516316	rs2815383	T	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	67558739	rs6588237	C	T	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	67560897	rs10889653	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	67560956	rs11208997	C	T	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	67561056	rs61782288	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr1	67562106	rs6670381	G	T	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	67577367	rs6588240	A	T	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	67579245	rs2144655	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	67579386	rs2144656	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	67591347	rs6691094	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	67591611	.	GAA	G	487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-1.196;QD=11.61;ReadPosRankSum=-1.833;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	67591660	rs4655520	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	67633812	rs1884444	G	T	1822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=-0.090;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:50,88:0.64:138
chr1	67633963	rs11465770	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr1	67648460	rs6687620	T	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	67685387	rs7530511	T	C	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	67685443	rs7518660	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr1	67702526	rs11465804	T	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,96:0.59:162
chr1	67705726	rs10889671	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	67705958	rs11209026	G	A	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.329;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	67795319	rs1495963	T	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	67852141	rs12138812	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	67852335	rs2228420	G	A	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	67861520	rs2229546	C	A	8812.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	67890526	rs6702742	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	68151980	rs2759219	T	G	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	68152363	rs3783468	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	68152388	rs681673	T	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	68173264	rs2295942	C	T	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-0.019;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:87,72:0.45:159
chr1	68614013	rs2566789	A	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	68624878	rs3748705	C	T	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	68652184	rs5774920	T	TA	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=5.58;ReadPosRankSum=1.243;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:44,37:0.46:81
chr1	68659600	rs79073450	C	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	68659982	rs3748703	C	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr1	68905358	rs1925955	G	C	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:60,88:0.59:148
chr1	68915479	rs3125907	A	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr1	68943436	rs1924542	G	A	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=2.433;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:49,35:0.42:84
chr1	68943442	rs3790476	A	G	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=1.109;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr1	68943665	rs12119046	T	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr1	68947318	rs3833522	C	CA	9534.73	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	68949139	rs10789263	T	C	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.659;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:26,44:0.63:70
chr1	68952564	.	AACACAC	A	326.73	.	AC=1;AF=0.500;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.67;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	70034263	rs72671185	C	G	5523.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:252,266:0.51:518
chr1	70034370	rs11280966	C	CCAGCCGCGTG	3340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=8.810;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=6.808;QD=18.66;ReadPosRankSum=-2.264;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:85,94:0.53:179
chr1	70144097	rs115352313	G	A	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.372;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:55,55:0.50:110
chr1	70225832	rs17397812	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	70587360	rs641909	C	T	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	70639111	.	T	TGG	553.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr1	70654919	rs4650030	A	G	2107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=4.196;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.919;QD=11.21;ReadPosRankSum=0.559;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:85,103:0.55:188
chr1	70700491	rs201325006	A	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr1	70904523	rs112004441	T	TTGTG,TTG	1781.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=105;set=Intersection	GT:AF:DP	0/1:0.90:49
chr1	70904800	rs1021737	G	T	5458.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	71331287	rs78823391	T	A	60.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	71331498	rs1409986	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr1	71334870	rs1536537	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr1	71419499	rs571705	C	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	71440217	rs2072947	C	T	60.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	71477841	rs5673	A	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	71512643	rs5671	C	A	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:138,165:0.54:303
chr1	71536574	rs11583800	G	C	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-1.842;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:67,56:0.46:123
chr1	71537980	rs41287936	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.809;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr1	71538191	rs11556475	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,22:0.31:71
chr1	71544069	rs74544306	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:27,34:0.56:61
chr1	72058367	rs1334004	C	T	182.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	72058405	rs1334005	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	72058552	rs1413368	G	A	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	72242039	rs6424448	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	72400656	rs11209871	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr1	72747844	rs3101341	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	74506942	rs79435376	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr1	74507315	rs17094777	C	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr1	74507711	rs7538410	T	G	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	74575049	rs12133827	A	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	74575182	rs1340472	C	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	74646514	rs6701961	C	T	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	74648408	rs17094900	C	T	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.002;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=1.617;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:106,86:0.45:192
chr1	74666507	rs9804006	T	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.699;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:23,29:0.56:52
chr1	74669973	rs9425024	T	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	74670172	rs12046751	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr1	74670369	rs143587621	A	T	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:65,62:0.49:127
chr1	74701295	rs505508	T	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	74801864	rs11210450	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr1	74819077	rs6424586	T	G	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	74836228	rs3765667	T	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	74841173	rs2880795	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	74929075	rs3737563	T	C	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr1	74936374	rs596204	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr1	74937082	rs3765673	A	G	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:143,141:0.50:284
chr1	74937828	rs3765675	C	T	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,84:0.51:166
chr1	74941293	rs649058	G	A	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:243,203:0.46:446
chr1	74946373	rs41289204	C	T	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr1	75006027	rs3895907	A	G	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:65,84:0.56:149
chr1	75006076	rs3845348	G	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	75036783	rs9326115	T	C	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	75036812	rs9326116	C	T	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	75037845	rs12723334	A	G	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr1	75038228	rs11580409	A	C	4033.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:204,190:0.48:394
chr1	75042626	.	TA	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.681;QD=1.13;ReadPosRankSum=-0.659;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr1	75065441	rs696698	C	T	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.946;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:111,93:0.46:204
chr1	75086412	rs41289218	G	C	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-1.231;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:77,47:0.38:124
chr1	75108863	rs623171	A	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr1	75132462	rs5775255	T	TA	906.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,54:0.50:107
chr1	75172001	rs7527057	T	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:104,99:0.49:203
chr1	75172756	rs71695861	TAA	T,TA	1767.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=21.04;SOR=1.223;set=HC	GT:AD:AF:DP	1/2:0,49,35:0.58,0.42:84
chr1	75190452	rs1051122	C	T	3448.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.232;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.177;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.93;ReadPosRankSum=-0.572;SOR=0.369;set=HC	GT:AD:AF:DP	1/1:1,132:0.99:133
chr1	75199152	rs277373	C	T	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	75214375	rs142935215	CCAAA	C	742.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr1	75214390	rs749690	G	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=1.689;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr1	75596388	rs41289234	C	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,40:0.53:76
chr1	75603055	rs1526503	A	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	75614380	rs35220110	CT	C	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=14.828;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.707;QD=3.26;ReadPosRankSum=0.767;SOR=1.733;set=HC	GT:AD:AF:DP	0/1:120,70:0.37:190
chr1	75622616	rs941032	C	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,84:0.59:142
chr1	75626420	rs2462955	A	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr1	75672376	rs1948874	A	G	3440.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:184,170:0.48:354
chr1	75679569	rs3831898	C	CT	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr1	75680433	rs687715	G	A	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=1.314;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:31,45:0.59:76
chr1	75680545	rs688513	T	G	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	75681351	rs594470	A	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	75681511	rs595009	T	C	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	75685403	rs600734	T	C	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:167,146:0.47:313
chr1	75685643	rs12042874	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr1	75699646	rs10493564	T	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,73:0.45:162
chr1	75699771	rs10493565	A	G	3801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.045;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:190,195:0.51:385
chr1	75699831	rs10493566	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:95,100:0.51:195
chr1	75702674	rs17096508	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr1	75704070	rs141512125	CATATATATATAT	C	671.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr1	75707652	rs7556057	C	T	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=-0.750;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:86,78:0.48:164
chr1	75708529	rs1856128	A	T	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr1	75716925	rs588098	C	T	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=0.874;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:100,87:0.47:187
chr1	75740845	rs1144298	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	75766186	rs623850	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	75823084	rs1249833	C	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	75868236	rs1249777	G	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	76143443	rs7513363	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;MQ=59.54;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr1	76143458	rs7516122	T	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr1	76143505	rs1746748	T	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	76190569	rs1251075	C	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr1	76194054	rs7524467	C	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr1	76194229	rs11316888	GT	G	1624.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	76194306	rs1146572	A	G	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	76198436	rs2275378	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.060;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr1	76198785	rs3818855	G	A	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.830;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:148,128:0.46:276
chr1	76199345	rs2153126	C	G	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:72,92:0.56:164
chr1	76205643	rs12127402	C	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr1	76216330	rs11161521	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	76227022	rs1061337	A	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr1	76234886	rs1146593	A	G	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	76235001	rs1826978	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	76252011	rs1146634	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	76252687	rs1146636	T	C	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr1	76255228	rs11161620	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr1	76257074	rs35837562	A	AT	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.997;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	76257892	rs12703	A	T	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	76260837	rs11161626	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	76269372	rs5745323	T	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	76272837	rs3737574	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr1	76276353	rs12122939	T	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=-0.271;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	76280543	rs1144339	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	76333163	rs5745433	T	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=2.247;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr1	76344011	rs1493367	C	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-0.134;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr1	76344705	rs5745448	T	C	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.81;ReadPosRankSum=-0.710;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:47,45:0.49:92
chr1	76344711	rs5745449	A	T	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.56;ReadPosRankSum=-1.483;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:48,48:0.50:96
chr1	76344920	rs5745453	G	A	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	76345640	rs2307077	G	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr1	76345884	rs2307078	T	A	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	76346920	rs5745466	C	CAT	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	76363699	rs114139185	A	C	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=1.651;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:34,36:0.51:70
chr1	76363756	rs114093703	G	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	76365191	rs5745544	C	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.330;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr1	76378360	.	T	TA	770.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.591;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr1	76378361	rs5020911	T	A	442.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.430;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:61,33:0.35:94
chr1	76378362	rs2881857	T	A	878.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=0.060;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:50,50:0.50:100
chr1	76378363	rs28693610	T	A	610.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.586;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:54,41:0.43:95
chr1	76387748	rs12567390	T	A	374.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr1	76397972	rs3795251	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr1	76608491	rs289686	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.439;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr1	76608507	rs172333	C	G	784.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.763;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-2.303;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:57,24:0.30:81
chr1	76608508	rs71071986	CT	C	905.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr1	76608532	rs597362	T	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr1	76608691	rs12064337	G	T	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	76608777	rs184095	C	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	76771475	rs10782610	G	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	76771495	rs11162118	G	C	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr1	77093010	rs680442	CT	TG	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	77093180	rs1184626	C	A	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	77094242	rs41291522	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	77627096	rs839825	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	77634948	rs1779199	G	A	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	77759380	rs2815310	C	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr1	77759578	rs2815311	A	G	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:65,78:0.55:143
chr1	77763542	rs1167206	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	77949123	rs7515509	G	A	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=2.454;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	77949129	rs7528932	A	T	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.98;ReadPosRankSum=0.411;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	78001881	rs10873948	T	C	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	78024284	rs6675743	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	78024345	rs79671213	C	CTAT	2572.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	78031994	rs7552291	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	78033981	rs145860524	AAAATG	A	1035.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	78034156	rs10581619	CAA	C	98.37	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.05;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	78045369	rs1565852	G	A	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	78179032	rs71075758	AT	A	163.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.696;QD=11.70;ReadPosRankSum=-0.801;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	78184433	rs1963170	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.97;ReadPosRankSum=1.383;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	78267163	rs140911803	G	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr1	78281002	rs11162386	T	C	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	78383467	rs1749913	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	78392446	rs1166698	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr1	78399207	rs4483454	C	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	78430689	rs11409017	A	AG	7747.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	78432506	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.652;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr1	78444764	rs140681455	C	CGGCCG	1395.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr1	78478622	rs183696182	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	78478675	rs3790586	G	A	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	78481640	rs1039863	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	78560583	rs565164	G	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=-0.494;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	78578177	rs6666954	T	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr1	78585086	rs540742	T	C	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:68,61:0.47:129
chr1	78591740	rs139844601	TAAC	T	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	78601465	rs3838409	C	CT	369.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr1	78963437	rs1322934	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr1	78998049	.	T	TTATATATA	72.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.18;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	79093818	rs273259	A	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,61:0.64:95
chr1	79094081	rs1333973	T	A	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.91;ReadPosRankSum=-0.584;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr1	79094593	rs273257	A	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	79095339	rs273256	A	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.666;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:26,40:0.61:66
chr1	79095526	rs3820093	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,59:0.50:117
chr1	79106899	rs273252	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr1	79107372	rs41309155	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr1	79115905	rs2070123	T	C	1363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-0.461;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:61,65:0.52:126
chr1	79124961	rs57140825	G	T	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	79128320	rs11577395	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	79128570	.	G	GT	1215.73	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr1	79355596	rs1061728	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	79358743	.	CA	C,CAA	272.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=1.078;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:4,13,16:0.39,0.48:33
chr1	79383300	rs5775467	CA	C	76.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	79383458	rs12569007	A	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:59,47:0.44:106
chr1	79392756	rs12754818	C	A	163.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	79401927	rs61770681	A	G	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.197;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr1	79403751	rs985277	T	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.785;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:44,43:0.49:87
chr1	79411888	rs723898	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr1	79472141	rs1571992	C	A	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.790;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr1	82302600	rs12064537	T	C	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-0.879;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr1	82415814	rs9438715	T	C	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	82416220	rs2148630	G	A	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	82417552	rs7413275	T	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	82421596	rs11163397	C	T	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	82437670	rs144957268	ATTTGT	A	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	82437682	rs41292976	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	84355734	rs71826512	AAGAACTTCAAGGAT	A	1567.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:95,45:0.32:140
chr1	84383079	rs17534614	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	84640691	rs582201	T	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	84765340	rs10658515	G	GTATA	260.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr1	84765360	rs1625305	T	A	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=1.749;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr1	84791239	rs315555	T	C	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	84810396	rs315528	A	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	84810815	rs315527	A	G	10794.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	84853957	rs665074	A	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	84854097	rs142654778	T	C	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=0.893;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:99,112:0.53:211
chr1	84864256	rs3738573	G	C	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	84867563	rs41293023	C	T	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.51;ReadPosRankSum=-0.069;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	84867569	rs41293025	C	G	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=0.548;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr1	84867610	rs3754274	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr1	84867806	rs41293027	T	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	84874242	rs3116406	C	G	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr1	84876501	rs41298531	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:67,70:0.51:137
chr1	84876711	rs3216015	C	CA	2570.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,76:0.58:132
chr1	84876731	rs1506700	T	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr1	84880380	rs3768250	T	C	3467.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:163,172:0.51:335
chr1	84944989	rs2292191	A	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr1	84946745	rs7413066	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	84956161	rs11440073	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.351;QD=0.20;ReadPosRankSum=-0.044;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:209,36:0.15:245
chr1	84963000	rs1246159	A	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr1	84986213	rs5775789	AT	A	325.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	84991488	rs2292808	T	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	84999571	rs10874451	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	85009894	rs12143652	A	G	3280.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:142,161:0.53:303
chr1	85014433	.	CTTTTTTTTTTTTTTT	C	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.321;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=31.412;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.764;QD=25.19;ReadPosRankSum=1.623;SOR=2.934;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	85016177	rs1400777	A	G	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.211;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	85029077	rs15911	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr1	85031630	rs2994953	G	A	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr1	85036239	rs2303306	C	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:102,65:0.39:167
chr1	85039828	rs41299545	G	A	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:112,138:0.55:250
chr1	85039955	rs2303307	G	A	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,112:0.57:195
chr1	85039998	rs142534762	CGCAGCGCCA	C	1751.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr1	85040069	rs2911592	GC	AA	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr1	85096592	rs11164027	C	T	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	85096920	rs6695249	A	G	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	85097247	rs12031476	T	G	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	85113203	rs2994949	T	C	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	85128280	rs2994437	T	C	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	85131982	rs3096445	T	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	85279394	rs41289033	T	A	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	85331808	rs146269415	G	GAGA	5090.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	85392324	rs6681025	C	T	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.977;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:73,72:0.50:145
chr1	85397286	rs34793286	G	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:60,72:0.55:132
chr1	85412989	rs150462929	CCA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.747;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr1	85418307	rs677476	C	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr1	85422061	rs632545	C	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:119,106:0.47:225
chr1	85462582	rs11161503	C	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr1	85462652	rs11161504	G	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	85462665	rs11161505	T	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	85488030	rs2028304	G	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:95,84:0.47:179
chr1	85488154	rs2039814	G	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	85537502	rs4907131	T	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	85537522	rs4907132	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	85538655	rs28417745	A	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.40;ReadPosRankSum=2.838;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	85547945	rs7534574	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	85555672	rs1417351	A	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	85559118	rs11304107	CT	C	1138.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr1	85559396	rs41289039	G	C	3609.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:213,177:0.45:390
chr1	85573705	.	A	ACT	2898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=2.294;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.266;QD=22.30;ReadPosRankSum=0.237;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:57,73:0.56:130
chr1	85575831	rs200131490	G	T	2898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=4.089;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.086;QD=10.82;ReadPosRankSum=-0.560;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:122,146:0.54:268
chr1	85575838	.	T	TA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.826;QD=0.24;ReadPosRankSum=0.917;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:154,31:0.17:185
chr1	85589842	rs17121745	A	G	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:172,151:0.47:323
chr1	85589939	rs11356964	GT	G	3016.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:102,103:0.50:205
chr1	85592126	rs817474	G	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	85594392	rs2305930	T	C	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.704;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr1	85594573	rs2305931	T	C	115.28	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	85595645	rs1020770	C	T	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=0.516;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:67,66:0.50:133
chr1	85598527	rs36118758	TC	T	2992.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	85598679	rs145165915	T	TA	1967.73	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:133,106:0.44:239
chr1	85624549	rs709786	C	T	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	85624864	rs817412	G	A	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	85647713	rs817444	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	85648620	rs817443	C	T	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	85648905	rs11161539	T	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	85725353	rs112918702	GCCGGAAA	G	1776.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	85741921	rs2735594	G	C	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	85742012	rs11576939	G	C	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	85787114	rs233116	A	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	85930272	rs4001153	GAC	G,GACAC	1411.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.62,0.34:61
chr1	85930469	rs139393958	G	A	6367.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:219,300:0.58:519
chr1	86046561	rs2297140	C	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	86046924	rs2297141	G	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	86119898	rs2274738	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr1	86167957	rs1764298	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	86173298	rs1539444	C	T	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:136,108:0.44:244
chr1	86202016	rs1481200	C	T	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	86202102	rs12037785	C	A	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:150,130:0.46:280
chr1	86210241	rs11387251	G	GT	812.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	86210546	rs7547023	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	86211325	rs10747324	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	86246849	rs313722	A	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr1	86246998	.	T	TA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=4.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.430;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr1	86249063	rs313724	C	T	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	86249911	rs313725	A	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	86250106	.	T	C	580.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr1	86252025	rs12746325	A	G	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.000;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:24,37:0.61:61
chr1	86334070	rs313775	T	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	86334316	rs17411495	T	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=0.585;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr1	86340193	rs11161696	G	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	86340262	rs12136023	C	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	86340523	rs1564518	T	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	86340524	rs1564517	G	A	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=-0.444;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	86340794	rs1564516	T	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	86340880	rs1564515	A	G	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:44,35:0.44:79
chr1	86340892	rs7536101	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:41,48:0.54:89
chr1	86341153	rs12122234	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	86361802	rs7541806	C	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	86372839	rs5775877	T	TG	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr1	86375654	rs1502657	C	G	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	86377028	rs10493777	C	T	1178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=3.229;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:43,55:0.56:98
chr1	86453237	rs11799965	T	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr1	86482922	rs557928	A	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr1	86487981	rs516213	G	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,82:0.59:140
chr1	86487992	rs5775882	A	AACAG	2339.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,63:0.55:115
chr1	86488232	rs641712	G	A	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-1.752;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr1	86497769	rs582141	C	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	86515958	rs17415366	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	86554813	rs56934354	G	GA	438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.39;MQRankSum=4.061;QD=16.25;ReadPosRankSum=-0.806;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr1	86554821	rs12405791	G	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.89;MQRankSum=3.384;QD=14.72;ReadPosRankSum=-1.965;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr1	86557967	rs11161732	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	86578449	rs2039602	A	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.875;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.37;ReadPosRankSum=-0.778;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	86578453	rs11161738	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.362;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.76;ReadPosRankSum=-0.807;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	86590915	rs2174767	G	A	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr1	86590948	rs11161746	A	G	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:136,125:0.48:261
chr1	86591837	rs11161747	G	A	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:100,86:0.46:186
chr1	86621992	rs1999747	C	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	86818572	rs272496	T	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	86820267	rs1182098	C	T	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	86821194	rs10676142	A	ACT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	86838158	rs421105	C	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	86852621	rs2390096	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	86890931	rs1158505	T	A	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	86891005	rs1158506	C	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=2.778;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr1	86891179	rs2210641	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr1	86896354	rs4292929	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	86896541	rs3737672	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	86897973	rs1334150	T	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	86898315	rs3737159	T	C	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr1	86904930	rs56187142	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	86906055	rs55812833	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr1	86906114	rs1981082	T	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	86913265	rs2275001	C	T	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:120,125:0.51:245
chr1	86919011	rs3820041	G	A	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	86920904	rs2390057	A	G	5014.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:234,243:0.51:477
chr1	86939130	rs2145412	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	86939390	rs2180762	G	A	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	86947975	rs1321694	A	T	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:119,143:0.55:262
chr1	86952324	rs2734705	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	86954880	rs5744379	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	86956772	rs2753341	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	86956785	rs2753342	C	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	86959173	rs2791494	T	C	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr1	86959748	rs5744403	A	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	86959796	rs1321689	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,53:0.52:102
chr1	86961210	rs5744408	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr1	86964185	rs145400644	AAGAAAAC	A	894.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr1	87025819	rs2231582	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr1	87036746	rs772599	C	A	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	87036946	rs2231595	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr1	87045896	rs4001061	TCCTACA	T	16554.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	87101245	rs2292831	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr1	87101375	rs2292830	C	G	799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=1.886;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:56,44:0.44:100
chr1	87101649	rs2292829	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr1	87200729	rs263483	C	G	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:125,129:0.51:254
chr1	87458695	rs10873810	G	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	87538182	rs34124612	TTG	T	2871.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	87538200	rs10782592	G	A	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=42.08;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	87549858	rs2798675	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	87558066	rs66709085	CCACATA	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	87563668	rs1199677	G	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	87570398	rs1621247	G	A	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	87598117	rs6686259	T	G	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	87599697	rs6576865	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	87633761	rs10782593	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	89225976	rs430600	T	C	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-1.266;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:48,40:0.45:88
chr1	89236029	rs7541301	T	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:80,40:0.33:120
chr1	89271574	rs786906	T	C	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.266;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=1.009;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:129,102:0.44:231
chr1	89280965	rs786918	A	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-1.675;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:24,25:0.51:49
chr1	89289954	.	A	AT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=0.063;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr1	89322982	rs2794318	G	A	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	89426902	rs3738055	G	A	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	89427252	rs10922530	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	89430420	rs1536259	A	G	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	89449383	rs147771633	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-4.748;QD=3.25;ReadPosRankSum=0.997;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:26,5:0.16:31
chr1	89449390	rs112636230	T	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-5.259;QD=3.63;ReadPosRankSum=0.835;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr1	89449399	rs77567101	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-5.245;QD=3.94;ReadPosRankSum=-0.476;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	89475230	rs4142706	T	G	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:54,73:0.57:127
chr1	89477830	rs6659829	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	89478854	rs4656076	C	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	89479063	rs4656077	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr1	89479074	rs4656078	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:46,34:0.42:80
chr1	89479758	rs3795543	T	C	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:135,104:0.44:239
chr1	89486037	rs7555039	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr1	89520329	rs72054220	GAAAAAC	G	1189.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr1	89520574	rs10922554	C	A	1739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=4.628;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.736;QD=10.36;ReadPosRankSum=-0.049;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:84,84:0.50:168
chr1	89520636	rs10922555	G	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.180;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-0.983;QD=14.22;ReadPosRankSum=-0.520;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	89520643	rs10922556	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.051;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=16.516;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-1.126;QD=15.30;ReadPosRankSum=-0.142;SOR=0.051;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr1	89522512	rs4376712	C	T	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr1	89522646	rs1048425	G	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr1	89574026	rs1329119	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=1.005;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr1	89575677	rs2026043	T	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	89579941	rs2230338	T	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:184,155:0.46:339
chr1	89582690	rs1803632	G	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr1	89583544	rs2209956	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	89597755	rs942442	T	C	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	89607479	rs6666846	G	T	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.557;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr1	89607486	rs6658235	T	C	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.943;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.601;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr1	89615979	rs586609	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	89618472	.	GAA	G	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=-0.792;QD=3.14;ReadPosRankSum=1.690;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	89637578	rs676913	G	A	2510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.475;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.708;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:133,128:0.49:261
chr1	89650850	rs623134	A	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	89652071	rs561042	TC	CT	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=4.043;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-5.077;QD=12.94;ReadPosRankSum=0.110;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:97,53:0.35:150
chr1	89652078	rs608339	A	T	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=6.073;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-5.213;QD=12.94;ReadPosRankSum=-0.603;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:100,56:0.36:156
chr1	89652087	rs1142890	CC	TG	1919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-5.697;QD=12.80;ReadPosRankSum=1.275;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:102,48:0.32:150
chr1	89652090	rs1142888	T	G	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.407;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-5.723;QD=11.32;ReadPosRankSum=1.033;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:103,48:0.32:151
chr1	89652094	rs1142887	G	A	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-5.723;QD=11.04;ReadPosRankSum=0.797;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:103,48:0.32:151
chr1	89652097	rs1142886	C	T	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.795;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-5.823;QD=11.03;ReadPosRankSum=0.734;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:102,46:0.31:148
chr1	89652102	rs655260	A	T	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-5.732;QD=10.93;ReadPosRankSum=0.418;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:101,47:0.32:148
chr1	89661228	rs650448	T	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	89726592	rs535351	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr1	89730723	rs9628688	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr1	89731959	rs12729209	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	89733273	rs6690597	T	C	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr1	89845926	rs11361992	GT	G	1444.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:80,91:0.53:171
chr1	89847372	rs4658359	G	T	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:139,131:0.49:270
chr1	89847411	rs4658360	C	T	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:133,113:0.46:246
chr1	89847444	rs4658146	A	G	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:106,100:0.49:206
chr1	89849201	rs928652	C	G	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.846;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	89849350	rs928653	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-0.974;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr1	89849441	rs928654	T	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.67;ReadPosRankSum=1.294;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr1	89849574	rs928655	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	89849742	rs959460	A	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr1	89851100	rs369061637	G	GT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.112;QD=5.03;ReadPosRankSum=-0.170;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	89885854	rs6673154	G	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.957;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:77,40:0.34:117
chr1	89888530	rs4261099	C	T	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:81,71:0.47:152
chr1	89888552	rs4282800	T	A	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:108,91:0.46:199
chr1	89888585	rs4415545	C	G	4721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.464;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-0.997;QD=15.48;ReadPosRankSum=1.490;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:178,127:0.42:305
chr1	89888588	rs4506445	G	T	4715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-1.071;QD=15.07;ReadPosRankSum=1.586;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:184,129:0.41:313
chr1	90048132	rs2279085	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	90049040	rs36084789	A	G	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:132,120:0.48:252
chr1	90058242	rs34096201	G	GT	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.760;QD=7.11;ReadPosRankSum=0.125;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:23,27:0.54:50
chr1	90171835	rs6657969	C	T	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.440;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	90178743	rs474536	A	G	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	90470915	rs11808927	T	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	90486412	rs2816881	T	G	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,63:0.51:124
chr1	90493026	rs10922744	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=0.563;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:71,54:0.43:125
chr1	91447985	rs358691	C	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	91727781	rs580070	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.15;ReadPosRankSum=0.842;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	91728053	rs585898	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	91728202	rs555432	T	C	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	91739208	rs281964	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	91739414	rs281963	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	91742055	rs281959	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	91781304	rs281991	T	C	208.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	91781413	rs281992	T	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr1	91781644	rs11589490	C	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.129;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chr1	91782031	rs11584478	T	C	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-1.157;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:21,51:0.71:72
chr1	91784887	rs10493845	G	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=1.650;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:92,28:0.23:120
chr1	91793877	rs281972	T	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	91813184	rs281936	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	91841301	rs282036	T	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	91846374	rs282033	C	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	91846595	rs5776097	T	TA	257.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;MQ=63.51;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	91846654	rs282032	A	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	91851253	rs282026	T	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	91851439	rs17485293	C	T	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.538;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	91859795	rs282009	T	C	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.68;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	91859795	.	TATGTGA	CATGTGA,CATGTGG	666	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=11;MQ=60.0;NF=64,32;NR=52,29;PP=621,666;QD=5.65320010817;SC=TTGCCAGCAATATGTGATAAG;SbPval=0.54;Source=Platypus;TC=116;TCF=64;TCR=52;TR=116,61;WE=91859809;WS=91859785;set=Platypus	GT:AF:DP	0/1:1.00:116
chr1	91859801	rs11165778	A	G	1385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.537;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:61,69:0.53:130
chr1	91870626	rs55841380	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	91967142	rs13447458	G	GC	1050.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr1	91973557	rs553606	T	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	91974034	rs1876264	G	A	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	91980447	rs483532	A	G	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:131,105:0.44:236
chr1	91980649	rs10874758	G	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr1	91989572	rs488126	T	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	92108274	.	TA	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.175;QD=0.68;ReadPosRankSum=-0.620;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	92108899	rs2493202	C	T	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:179,206:0.54:385
chr1	92161459	.	A	G	272.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	92174260	rs284878	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:77,103:0.57:180
chr1	92177938	rs1805113	A	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:109,99:0.48:208
chr1	92185657	rs1805112	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr1	92195601	rs10783002	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr1	92200437	rs41286789	T	C	3690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.739;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:206,191:0.48:397
chr1	92200593	rs11165376	A	G	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	92200627	rs10874913	T	C	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.62;SOR=2.540;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	92200634	rs11165377	C	T	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	92428495	rs10783071	C	A	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	92430435	.	CGT	C	306.74	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.34;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	92445257	rs3088232	C	G	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	92446112	rs11165911	T	C	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	92446398	rs2303967	T	A	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	92446961	rs148496128	T	TTGTA	367.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr1	92447004	rs10875104	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	92457843	rs10747493	C	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	92457969	rs55996004	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.56;ReadPosRankSum=0.003;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	92573404	rs114520917	T	A	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	92647532	rs565156	C	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,46:0.42:110
chr1	92712266	rs974924	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	92764828	rs10875348	T	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	92799151	rs1487537	C	T	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	92852504	rs10747411	A	G	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=25.40;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	92944314	.	CAGAG	C	712.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=26.40;ReadPosRankSum=-0.772;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr1	92946479	rs11164605	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr1	92979354	rs6603979	A	G	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:128,122:0.49:250
chr1	93029453	rs6656432	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	93029479	rs68039687	A	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-1.383;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	93071048	rs2050597	G	T	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr1	93073228	rs11808092	C	A	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:79,51:0.39:130
chr1	93089823	rs7514716	T	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr1	93128854	rs10747450	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-1.641;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr1	93160002	rs34202284	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.53;ReadPosRankSum=0.209;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr1	93160902	rs2391199	T	C	2114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=1.167;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:79,104:0.57:183
chr1	93163633	rs1017008	C	T	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr1	93167610	rs10218567	C	T	300.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr1	93167854	rs10218670	A	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr1	93306317	rs10874744	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr1	93426866	rs945629	T	C	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.21;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	93426866	.	TGCG	CGCC,CGCG	508	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.27;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=20;MQ=60.0;NF=21,34;NR=10,17;PP=508,213;QD=18.111866931;SC=GGGCGAGTCCTGCGCGGCGCG;SbPval=0.61;Source=Platypus;TC=51;TCF=34;TCR=17;TR=31,51;WE=93426877;WS=93426856;set=Platypus	GT:AF:DP	0/1:0.61:51
chr1	93426869	rs1415069	G	C	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=0.655;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:19,37:0.66:56
chr1	93545157	rs2815419	G	A	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	93580402	rs11164874	T	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	93580581	rs2815427	G	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	93580992	rs566843	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr1	93581024	rs2295423	T	C	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:83,78:0.48:161
chr1	93583818	.	CTT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.30;ReadPosRankSum=1.710;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	93584870	.	C	CT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.555;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr1	93602194	rs2281524	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	93620393	rs1060622	G	A	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:176,145:0.45:321
chr1	93646207	rs2297707	T	C	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:115,112:0.49:227
chr1	93649732	rs6682670	A	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr1	93659350	rs2815411	A	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr1	93672723	rs2815413	A	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-1.207;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr1	93676314	rs555161	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	93676578	rs797676	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.029;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	93683210	rs624131	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	93687091	rs797661	G	T	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	93691855	rs34227600	GT	G	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.93;ReadPosRankSum=0.891;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	93698222	rs661566	C	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr1	93704793	rs5776176	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.792;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	93712532	rs670650	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	93744055	rs10874767	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr1	93998640	rs34814765	AT	A	737.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr1	94012287	rs237425	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	94041787	rs25569	G	GAC	2193.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	94312482	rs5776191	T	TC	20162.73	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:2,562:1.00:564
chr1	94312528	rs147446599	G	GC	15698.73	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr1	94312533	rs202198870	G	GC	15205.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr1	94312542	.	G	GC	14497.73	.	AC=2;AF=1.00;AN=2;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=46.47;SOR=1.920;set=HC	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	94312543	.	C	CCG	2971	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=46;MMLQ=23;MQ=60.0;NF=16;NR=54;PP=2971;QD=20;SC=GCGGCGCTCGCGCGCAGGTCC;SbPval=0.53;Source=Platypus;TC=70;TCF=16;TCR=54;TR=70;WE=94312580;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	94312544	.	G	C	1895	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=46;MMLQ=23;MQ=60.0;NF=26;NR=48;PP=1895;QD=26.0779893587;SC=CGGCGCTCGCGCGCAGGTCCA;SbPval=0.17;Source=Platypus;TC=107;TCF=29;TCR=78;TR=74;WE=94312580;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:33,74:0.69:107
chr1	94312544	.	G	GC	14002.73	.	AC=2;AF=1.00;AN=2;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=47.15;SOR=1.965;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	94312554	.	A	AG	12427.73	.	AC=2;AF=1.00;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	94312558	.	G	GC	11572.73	.	AC=2;AF=1.00;AN=2;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	94312566	rs2391318	G	T	10366.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=45.87;SOR=2.100;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	94312566	.	GT	TC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=2;HapScore=1;MGOF=46;MMLQ=23;MQ=60.0;NF=24;NR=48;PP=2947;QD=20;SC=CCGCGGCTGGGTCGGGCGCGG;SbPval=0.05;Source=Platypus;TC=115;TCF=25;TCR=90;TR=72;WE=94312580;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:43,72:0.63:115
chr1	94312567	rs2391319	T	C	10321.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=45.87;SOR=2.090;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	94312571	.	G	GC	4706.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=3.556;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.177;QD=28.88;ReadPosRankSum=-0.505;SOR=2.288;set=HC	GT:AD:AF:DP	1/1:2,161:0.99:163
chr1	94312572	.	CG	C	2352	.	AC=2;AF=1.00;AN=2;BRF=0.66;FR=1.0000;HP=4;HapScore=1;MGOF=46;MMLQ=23;MQ=60.0;NF=5;NR=48;PP=2352;QD=44.9245283019;SC=CTGGGTCGGGCGCGGCGGCCG;SbPval=0.55;Source=Platypus;TC=53;TCF=5;TCR=48;TR=53;WE=94312580;WS=94312518;set=Platypus	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	94312573	.	G	GC	4706.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=3.602;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.176;QD=28.53;ReadPosRankSum=-0.588;SOR=2.317;set=HC	GT:AD:AF:DP	1/1:2,163:0.99:165
chr1	94312576	.	G	GC	9318.73	.	AC=2;AF=1.00;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=45.46;SOR=2.332;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	94312579	.	G	GC	4813.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=202;ExcessHet=3.0103;FS=3.647;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.174;QD=28.82;ReadPosRankSum=-0.861;SOR=2.346;set=HC	GT:AD:AF:DP	1/1:2,165:0.99:167
chr1	94312584	.	G	C	1572	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=1;MGOF=188;MMLQ=23;MQ=60.0;NF=24;NR=50;PP=1572;QD=21.7131244939;SC=CGGCGGCCGGGCGCGAGGGAA;SbPval=0.04;Source=Platypus;TC=123;TCF=25;TCR=98;TR=74;WE=94312592;WS=94312571;set=Platypus	GT:AD:AF:DP	1/1:49,74:0.60:123
chr1	94312584	rs200230769	G	GC	8465.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=49.51;SOR=2.403;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	94343233	rs3789457	T	C	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:72,83:0.54:155
chr1	94344580	rs6675820	C	A	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:122,119:0.49:241
chr1	94344840	rs6681078	A	C	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:87,87:0.50:174
chr1	94360107	rs769211	C	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	94367097	rs7515191	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.761;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr1	94374576	rs2273406	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr1	94374742	rs743119	C	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr1	94471075	rs1762114	A	G	8417.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	94471154	rs4147863	C	T	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	94473029	rs67601772	TGTTGG	T	1317.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	94473605	rs3789386	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	94473845	rs2275029	T	C	12286.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	94473864	rs1800739	C	T	12456.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	94473896	rs2275031	G	T	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,225:1.00:226
chr1	94474185	rs2275032	A	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,146:0.99:147
chr1	94474328	rs4147857	T	C	10720.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr1	94474452	rs4147856	T	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	94476203	rs112614086	CT	C	5006.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	94476388	rs1801574	C	G	7967.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	94476991	rs4147899	CT	C	6558.73	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:9,225:0.96:234
chr1	94480037	rs2275033	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr1	94487354	rs472908	G	A	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	94495930	rs547806	T	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	94496253	rs2297671	G	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	94511533	rs3789398	G	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	94544135	rs4147887	A	AC	583.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr1	94544234	rs3112831	T	C	2318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.043;QD=9.83;ReadPosRankSum=-1.312;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:122,114:0.48:236
chr1	94544805	rs139796930	T	TCA	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	94549029	rs526016	A	G	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-2.900;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:69,61:0.47:130
chr1	94549083	rs574741	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr1	94568491	rs4847278	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	94568822	rs2297636	T	C	901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-1.150;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:44,45:0.51:89
chr1	94578548	rs4847281	T	C	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	94639337	rs1330858	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.37;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	94639447	rs1999272	C	T	8165.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	94643531	rs1048854	T	C	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-1.679;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:91,115:0.56:206
chr1	94667430	rs5776210	G	GA	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr1	94668046	rs1541099	C	T	5109.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	94674723	rs6684237	G	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.93;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	94674726	rs2274788	T	C	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.673;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr1	94980671	rs3118109	C	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	95001600	rs698946	A	C	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	95211285	rs6541364	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	95211525	rs1333953	G	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	95286094	rs10782992	G	T	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr1	95286658	rs6676991	C	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	95286675	rs11274910	GTCCCAAATGTAAA	G	2529.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	95290003	rs6687749	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	95290305	rs6541372	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	95291366	rs10874894	A	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	95330372	rs859098	G	A	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	95332864	rs12137650	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:52,42:0.45:94
chr1	95333068	rs859096	G	T	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	95358096	rs859063	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	95364845	rs11449294	C	CA	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	95367108	rs10605235	ACC	A	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	95367136	rs859059	G	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	95367649	rs859058	T	C	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	95367894	rs859057	A	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	95369198	rs11165268	G	C	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr1	95369211	rs859054	T	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	95427041	rs3831103	AT	A	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.430;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=2.074;QD=4.43;ReadPosRankSum=-0.476;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	95428414	rs2766005	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	95530591	rs12751061	A	T	1460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=1.822;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:93,76:0.45:169
chr1	95530709	rs6674467	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	95614215	rs76921353	G	A	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=2.400;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	95705615	rs640527	G	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr1	95709821	rs259358	T	C	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	95709939	rs2296308	T	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:99,101:0.51:200
chr1	95710329	rs1062076	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	95712050	rs148395594	TGAGACTCA	T	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.63;ReadPosRankSum=0.376;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr1	97189091	rs3762411	G	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.797;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr1	97189288	rs3762410	T	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	97278804	rs273886	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr1	97544760	rs17116357	C	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	97547831	rs290854	G	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	97771947	rs7556439	C	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	97771973	rs55776428	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.21;ReadPosRankSum=1.655;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	97981242	rs2811178	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.45;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	97981242	.	TG	CA,CG	128	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.0;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=4;MMLQ=24;MQ=60.0;NF=6,14;NR=0,0;PP=66,128;QD=19.911312477;SC=TTAAAATATATGATAGACATT;SbPval=1.0;Source=Platypus;TC=14;TCF=14;TCR=0;TR=6,14;WE=97981251;WS=97981232;set=Platypus	GT:AF:DP	0/1:0.43:14
chr1	97981243	rs2786783	G	A	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.390;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.55;ReadPosRankSum=1.088;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	97981395	rs1801159	T	C	2165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-2.192;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:108,107:0.50:215
chr1	98348885	rs1801265	G	A	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	98349390	rs111231337	C	CA	551.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr1	99127205	rs12723363	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.74;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	99127392	rs9728148	T	C	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	99150635	rs9433747	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	99156904	rs183435886	T	A	54.18	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	99164434	rs6577322	G	A	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr1	99225627	rs2019213	G	A	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	99358542	rs55842403	C	T	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=-1.920;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:92,95:0.51:187
chr1	99358761	rs7524256	T	C	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr1	99387628	rs34854879	T	TA	2850.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:3,128:0.98:131
chr1	99418647	rs309087	G	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr1	99418948	rs377156706	T	TGTGA,TGTGTGA	678.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/1:0.95:19
chr1	99470269	rs12057990	T	C	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:99,74:0.43:173
chr1	100111956	rs834997	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr1	100152183	rs7546477	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.80;ReadPosRankSum=0.156;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	100152206	rs7515433	T	C	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=1.532;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	100154467	rs6678252	G	A	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr1	100154643	rs150035005	C	T	2823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=2.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.116;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:202,150:0.43:352
chr1	100159418	rs12130813	T	C	85.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	100159552	rs58405312	C	CT	226.52	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr1	100176571	rs149861109	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr1	100182884	rs6696586	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr1	100185282	rs6679013	G	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr1	100194200	rs149243286	C	CAA	6881.73	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:250,219:0.47:469
chr1	100194305	rs7522921	C	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:66,71:0.52:137
chr1	100203501	rs7537095	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;MQ=59.85;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	100203571	rs7548709	A	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr1	100203597	rs7513916	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:71,75:0.51:146
chr1	100203648	rs7537296	C	T	2015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.009;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:95,99:0.51:194
chr1	100203693	rs7514021	G	A	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.081;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:85,101:0.54:186
chr1	100203902	rs10875245	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr1	100214391	rs1416237	T	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr1	100316765	rs663848	C	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	100318245	rs145049634	T	G	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-1.067;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:77,87:0.53:164
chr1	100326966	rs41285736	C	G	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	100327183	rs2230305	T	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=0.781;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:39,33:0.46:72
chr1	100328060	rs114575037	T	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr1	100336361	rs2230306	C	T	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.653;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:34,38:0.53:72
chr1	100340224	.	C	CATCTTTTCTTTCTTTTA	1877.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.891;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=21.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.81;ReadPosRankSum=-1.012;SOR=3.645;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr1	100340225	.	G	GAAAATAGTGACAGTTTTAATCTCTTTGTAGATATTTGCATTTAAGGTATCA	1877.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.693;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=12.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.82;ReadPosRankSum=-2.158;SOR=2.277;set=HC	GT:AD:AF:DP	0/1:44,26:0.37:70
chr1	100340454	rs142990156	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	100340782	rs28730701	G	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr1	100342227	rs3736295	C	T	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:62,67:0.52:129
chr1	100345455	rs115666491	C	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:54,80:0.60:134
chr1	100346327	rs141944878	G	T	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:137,130:0.49:267
chr1	100346741	rs3736296	T	C	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:57,66:0.54:123
chr1	100349983	rs150441555	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr1	100350383	rs2234707	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	100353675	rs555929	G	A	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.492;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:140,104:0.43:244
chr1	100358200	rs594249	G	A	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr1	100361823	rs140333425	G	A	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr1	100366141	rs572231	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr1	100366453	rs548255	T	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=4.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.422;SOR=1.338;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr1	100376448	rs2274570	G	A	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=0.789;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr1	100376456	rs1541041	T	A	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.30;ReadPosRankSum=1.178;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr1	100377973	rs28730706	T	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.972;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:29,38:0.57:67
chr1	100472604	rs534252	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr1	100480826	rs186284804	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr1	100481062	rs3835492	AG	A	127.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	100483201	rs75080379	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.07;ReadPosRankSum=2.065;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	100488177	rs482466	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr1	100503875	rs187489161	G	A	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr1	100503993	rs1395332	A	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	100535250	rs200249815	CT	C	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr1	100535425	rs145607815	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr1	100542638	rs6699449	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	100543962	rs644835	A	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr1	100546230	rs147084068	A	G	1426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=0.751;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:96,72:0.43:168
chr1	100575974	rs150364529	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,39:0.44:89
chr1	100584746	rs6662945	A	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr1	100591669	rs114057168	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	100598439	rs55863167	G	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:78,98:0.56:176
chr1	100598866	rs472498	GC	AT	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;JOINED;set=Intersection	GT:AD:AF:DP	0/1:72,70:0.49:142
chr1	100609743	rs41287244	T	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr1	100609820	rs41287246	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr1	100617887	rs2784177	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	100625934	rs147675956	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	100671867	rs183058253	A	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=7.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=2.770;SOR=1.595;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr1	100672060	rs12021720	T	C	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	100680593	rs11431894	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.04;ReadPosRankSum=-1.990;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	100681587	rs146249007	A	G	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.147;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:47,50:0.52:97
chr1	100700972	rs201469612	C	CT	259.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	100715454	rs3806235	G	A	7799.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	100733207	rs60634058	G	GT,GTT	2352.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.057;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=1.947;SOR=0.422;set=HC	GT:AD:AF:DP	1/2:23,84,50:0.54,0.32:157
chr1	100733552	rs4298755	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	100750733	rs58046505	AGTTTT	A	5273.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	100817529	rs35169146	AGT	A	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.730;QD=17.67;ReadPosRankSum=-0.085;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	100818464	rs594529	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	100818537	.	C	A	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=1.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-1.660;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:82,84:0.51:166
chr1	100961779	rs149672640	ATT	A	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;QD=25.78;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr1	100970346	rs10875295	T	C	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:174,201:0.54:375
chr1	101005090	rs2809819	G	A	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:87,84:0.49:171
chr1	101194965	rs68164684	G	GT	440.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=2.076;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr1	101203698	rs3176878	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr1	101203827	rs3176879	G	A	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	101342497	rs2295280	T	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	101372607	rs4908106	C	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	101487373	rs67726104	AACACAC	A	74.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.35;ReadPosRankSum=0.189;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	102271774	rs4907955	G	A	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	102296144	rs10493974	T	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:62,46:0.43:108
chr1	102296279	rs10493973	T	C	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:120,123:0.51:243
chr1	102462446	rs67744758	GTCAGT	G	1819.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr1	103343470	rs1031820	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr1	103352451	rs2229783	A	G	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:74,77:0.51:151
chr1	103353991	rs2783570	T	A	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	103354138	rs1676486	A	G	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	103354428	rs1763347	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	103354939	rs113226085	C	CTGTGTGTGTG	844.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;QD=40.23;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	103356168	rs1085	A	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	103379918	rs3753841	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	103380379	rs34228277	T	TA	295.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=-1.265;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr1	103400491	rs11164641	GA	AT	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	103405793	rs2126642	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr1	103427381	rs1012282	A	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr1	103428389	rs1841834	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	103435626	rs2061710	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	103444497	rs1903787	A	G	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr1	103444679	rs11164649	T	G	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:90,96:0.52:186
chr1	103444821	.	G	A	772.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr1	103445223	rs2622846	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	103449598	rs2615978	G	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	103455217	rs1463034	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	103461508	rs2622867	T	A	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	103462473	rs2786125	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	103463976	rs2622870	G	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	103467596	rs12135531	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr1	103467615	rs2929162	C	T	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	103468609	rs2251895	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=2.110;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	103468767	rs12136577	A	T	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.113;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:72,71:0.50:143
chr1	103471456	rs71752747	CCAT	C	6521.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	103471734	rs71592255	A	AAAATAAATAAAT	1461.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,37:0.43:87
chr1	103483514	rs945748	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.45;ReadPosRankSum=-0.000;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	103487394	rs35291481	CT	C	1380.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=0.298;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:6,73:0.92:79
chr1	103496620	rs7523441	G	T	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	103496805	rs36076089	GA	G	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr1	103540489	rs34822172	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	103544191	rs6668897	C	T	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr1	103544434	rs12136865	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr1	103548319	rs11164662	C	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	103573547	rs6691654	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	104076462	rs6697444	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.648;QD=4.16;ReadPosRankSum=0.185;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	104076495	rs6702220	A	G	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-0.808;QD=7.25;ReadPosRankSum=-0.684;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr1	104076537	rs6702324	A	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.087;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr1	104080169	rs10736038	G	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr1	104084226	rs10881232	A	G	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr1	104086145	rs10785725	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	104089773	rs7529928	C	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	107946262	rs12126267	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr1	107946324	rs71897263	CA	C	758.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.564;QD=4.49;ReadPosRankSum=0.069;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:92,77:0.46:169
chr1	107979396	rs480392	A	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	107998298	rs151001860	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.07;ReadPosRankSum=0.299;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:41,29:0.41:70
chr1	108139003	rs3748702	C	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr1	108152332	rs1328208	T	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr1	108152630	rs2296877	G	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr1	108160260	rs5776894	GA	G	836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.035;QD=6.49;ReadPosRankSum=-0.240;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:63,66:0.51:129
chr1	108292260	rs6672483	A	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	108293874	rs7516071	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr1	108293899	rs7518423	T	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr1	108297908	rs17236011	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr1	108299775	rs34437461	ATG	A	806.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.500;QD=32.27;ReadPosRankSum=-0.955;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr1	108299809	rs12138353	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-1.067;QD=6.02;ReadPosRankSum=-0.843;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr1	108307642	rs7514025	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr1	108307727	rs7528153	T	A	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,66:0.46:142
chr1	108313258	rs6583048	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-1.177;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr1	108315305	rs4611048	C	T	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	108507209	rs56193625	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr1	108507541	rs71796067	GGCC	G	1452.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	108724518	rs490680	A	G	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	108724693	rs491785	G	A	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	108771721	rs79996376	T	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-13.802;QD=3.93;ReadPosRankSum=1.100;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:175,69:0.28:244
chr1	109143457	rs7534348	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	109154974	rs2358522	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	109170746	rs2133198	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	109173710	rs17025410	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr1	109242392	rs34748332	A	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:93,80:0.46:173
chr1	109255513	rs3006864	G	T	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	109268573	rs4494160	T	C	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	109270402	rs10494096	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr1	109273269	rs4622086	A	G	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-2.613;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:57,62:0.52:119
chr1	109273456	rs4970809	A	G	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:152,129:0.46:281
chr1	109273610	rs4970810	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,44:0.51:86
chr1	109289353	rs1124427	C	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	109289487	rs6604120	C	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	109299453	rs1277044	C	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	109301019	rs3841723	GC	G	166.84	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr1	109301250	rs1277042	G	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	109315211	rs1623641	A	G	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	109321824	rs1759481	G	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	109325028	rs1277051	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=0.816;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:15,31:0.67:46
chr1	109338861	rs1127635	G	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.260;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:42,26:0.38:68
chr1	109339414	.	G	GT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.461;QD=2.63;ReadPosRankSum=-1.487;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	109350198	.	G	GT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=2.139;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr1	109358755	rs11453763	A	AT	1298.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:83,73:0.47:156
chr1	109358958	rs6696787	T	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr1	109366370	rs7522260	C	T	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	109369791	rs11102505	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=0.696;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:20,29:0.59:49
chr1	109369797	rs11102506	T	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.69;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	109369915	rs7551421	G	T	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	109372968	rs1277221	T	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	109377157	rs5776950	TA	T	839.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:13,60:0.82:73
chr1	109391486	rs1149142	G	A	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	109395105	rs1277207	C	T	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	109486196	rs338466	A	G	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:201,158:0.44:359
chr1	109486240	rs3215062	TA	T	3672.73	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:182,165:0.48:347
chr1	109490457	rs839543	T	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=1.005;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr1	109493134	rs34131552	G	GTTA	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	109524584	rs487901	C	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr1	109529322	rs61696019	T	TAA	1883.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	109545046	rs184606	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109618308	rs34069017	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	109649162	rs62623711	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr1	109650484	.	GA	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.748;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr1	109704390	rs643197	C	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	109704618	rs678238	A	G	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	109727475	rs649531	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	109734157	rs606066	T	C	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	109734225	rs643785	G	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109734541	rs645128	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	109735298	rs658779	T	C	6209.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	109735416	rs659543	A	C	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	109735504	rs659659	T	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	109737063	rs2359246	C	T	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	109737090	rs2359245	G	A	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	109737132	rs2359244	T	C	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	109737172	rs2359243	C	T	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	109737314	rs2359242	T	C	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.35;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	109737320	rs2359241	G	A	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	109740310	rs10573144	AGT	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-2.946;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr1	109742452	rs913178	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	109742485	rs913179	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr1	109743622	rs3736956	C	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	109745618	rs1052878	T	C	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	109771063	rs683182	T	C	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,102:0.53:192
chr1	109771881	rs657511	G	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	109773705	rs141018095	ATT	A	60.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=-1.465;SOR=0.061;set=HC	GT:AD:AF:DP	1/1:3,4:0.57:7
chr1	109777764	rs114166723	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr1	109778577	rs658092	T	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:73,58:0.44:131
chr1	109779556	rs631927	T	A	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	109779621	rs11439617	T	TC	1061.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr1	109792735	rs144034706	A	ACGC	1465.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:112,78:0.41:190
chr1	109794252	rs454107	T	C	16082.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr1	109795026	rs413380	T	C	8469.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	109795608	rs437444	T	C	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr1	109796053	rs2359414	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr1	109801121	rs684138	C	T	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:226,229:0.50:455
chr1	109806313	rs653635	T	C	6196.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:386,310:0.45:696
chr1	109810544	rs2281894	C	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:117,81:0.41:198
chr1	109814721	rs614174	G	A	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr1	109815252	rs611917	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr1	109816176	rs441853	A	C	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	109825198	.	C	A	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=3.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-2.511;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:56,71:0.56:127
chr1	109825360	rs643457	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	109836835	rs3738777	A	G	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:124,111:0.47:235
chr1	109836842	rs646335	C	G	2634.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:105,127:0.55:232
chr1	109838833	rs616899	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	109838918	rs629001	C	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	109839063	rs59806839	A	AT	120.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=1.229;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr1	109839392	rs604349	A	G	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	109839433	rs1278285	A	G	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	109839954	rs603624	G	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	109856842	rs372331171	TG	T	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=13.798;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.335;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr1	109883576	rs3217347	C	CAT	3981.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	109884775	rs2228604	T	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	109897103	rs11142	A	G	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	109898263	.	A	ACC	434	.	AC=2;AF=1.00;AN=2;BRF=0.03;FR=1.0000;HP=5;HapScore=1;MGOF=6;MMLQ=23;MQ=62.5;NF=0;NR=12;PP=434;QD=41.9925007032;SC=AGAACATTCCACCCGCCCCCC;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=12;WE=109898271;WS=109898253;set=Platypus	GT:AD:AF:DP	1/1:4,12:0.75:16
chr1	109958035	rs1465607	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	110009434	rs2787015	A	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	110009654	rs138525393	AC	A	8854.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	110018148	rs530565	C	T	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	110031188	rs12049330	T	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	110086451	rs17575798	G	A	7660.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr1	110091271	rs3737182	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	110141421	rs1889470	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	110153198	rs6658641	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	110155524	rs2304355	T	C	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	110199172	.	C	CTG	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=43.41;ReadPosRankSum=0.157;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	110199225	.	TG	T	303	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=14;HapScore=2;MGOF=63;MMLQ=23;MQ=60.0;NF=12;NR=6;PP=303;QD=17.5;SC=TGCGCCGGGGTGGGGGGGGGG;SbPval=0.1;Source=Platypus;TC=34;TCF=28;TCR=6;TR=18;WE=110199233;WS=110199215;set=Platypus	GT:AD:AF:DP	0/1:16,18:0.53:34
chr1	110200360	rs560018	T	C	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr1	110201580	rs650985	C	T	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr1	110201699	rs506008	T	C	4574.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	110201809	rs562996	G	T	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=45.69;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr1	110201812	rs563003	A	G	10476.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=43.47;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	110210780	rs530021	C	G	6354.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=26.26;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	110252010	rs1292098	T	C	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	110252091	rs35677255	G	A	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:143,142:0.50:285
chr1	110255174	rs929166	T	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr1	110256075	rs2479390	A	G	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:76,74:0.49:150
chr1	110256507	rs886177	G	A	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:73,88:0.55:161
chr1	110279701	rs7483	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:77,60:0.44:137
chr1	110279821	rs1537234	C	A	4850.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:262,243:0.48:505
chr1	110279914	rs1571858	C	T	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:117,111:0.49:228
chr1	110281941	rs10735234	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr1	110282972	rs1332018	G	T	4587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.446;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=0.229;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:227,229:0.50:456
chr1	110292856	rs15864	G	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	110295772	rs1887547	T	C	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-1.597;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:78,90:0.54:168
chr1	110295890	rs1887548	C	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr1	110300441	rs3818562	G	A	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:76,99:0.57:175
chr1	110300504	rs10776700	A	G	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	110301766	rs35360175	AGT	A	662.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr1	110304537	rs6676659	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr1	110466338	rs333970	C	A	9604.77	.	AC=1;AF=0.500;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	0/1:413,449:0.52:862
chr1	110466466	rs1058885	T	C	6126.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:341,310:0.48:651
chr1	110466709	rs333971	T	C	8660.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr1	110467745	rs333972	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	110468009	rs3138072	C	A	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.176;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	110558276	rs11384766	A	AC	1681.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	110560915	rs186724	C	T	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr1	110580693	.	AATATATATATATAT	A	924	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=25;MQ=60.0;NF=0;NR=4;PP=924;QD=231.75;SC=AGTTCTATCAAATATATATAT;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=4;WE=110580714;WS=110580683;set=Platypus	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	110592048	.	CTT	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=-0.368;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr1	110603286	rs144523285	A	AGGTGCTTCCTCCGTGGTGTCCAGGCAGG	1615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.434;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=25.735;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=7.082;QD=16.83;ReadPosRankSum=-0.568;SOR=4.611;set=HC	GT:AD:AF:DP	0/1:74,22:0.23:96
chr1	110612925	rs2274568	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	110709719	rs7527375	TG	CA	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;JOINED;set=Intersection	GT:AD:AF:DP	0/1:56,40:0.42:96
chr1	110716511	rs12747833	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	110735037	rs2603583	T	G	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr1	110738296	rs2784140	G	A	2970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.864;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:119,143:0.55:262
chr1	110740273	rs2603581	G	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr1	110740688	rs2761445	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:118,89:0.43:207
chr1	110765535	rs611587	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr1	110768590	rs78186862	C	T	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.970;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=-0.380;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:111,101:0.48:212
chr1	110882444	rs814771	A	G	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	110883569	rs3738752	A	T	15420.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,562:1.00:563
chr1	110924353	rs3738750	G	A	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	110925550	rs35653868	T	G	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:173,162:0.48:335
chr1	110998766	rs7551116	T	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	110998854	rs7514102	G	A	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	111059812	rs3841846	C	CGA	1314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=1.265;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:60,49:0.45:109
chr1	111060669	rs1281175	T	C	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:106,131:0.55:237
chr1	111061062	rs1281174	T	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:97,61:0.39:158
chr1	111136611	rs17026168	G	A	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=1.147;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:117,134:0.53:251
chr1	111144526	rs4839071	T	G	210.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=63.02;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	111144661	rs12407942	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr1	111144859	rs75305356	AT	A	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr1	111390624	rs112561357	AT	A	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.999;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.747;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	111436857	rs1578956	TC	GT	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;JOINED;set=Intersection	GT:AD:AF:DP	0/1:92,85:0.48:177
chr1	111437129	rs1343817	A	C	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr1	111441829	rs1803259	C	T	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:106,110:0.51:216
chr1	111441858	rs12030938	G	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:107,87:0.45:194
chr1	111492807	rs2232044	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	111726213	rs694180	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	111726869	rs3795823	G	A	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr1	111731215	rs2297702	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr1	111732003	rs35906145	T	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	111737183	rs660173	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	111737398	rs9970286	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	111739771	rs3833538	G	GCAGGACAAA	8580.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	111742838	rs639306	G	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	111770423	rs755467	T	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	111770591	rs2147790	A	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	111773568	rs2255089	G	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:100,100:0.50:200
chr1	111773830	rs2147789	A	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:66,51:0.44:117
chr1	111778187	rs2251715	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	111778241	rs2764544	C	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	111778824	rs2251608	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	111783982	rs13721	C	A,T	2348.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=100;set=Intersection	GT:AF:DP	1/2:0.46,0.54:100
chr1	111783996	rs2494007	A	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	111784138	rs942694	T	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=-0.097;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr1	111784148	rs2764551	T	G	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	111784158	rs942693	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.474;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr1	111784227	rs2182114	C	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr1	111784816	rs11102221	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr1	111785930	rs1056825	T	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	111825883	rs4406629	T	C	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,235:0.99:237
chr1	111826007	rs58982671	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:108,102:0.49:210
chr1	111833441	rs11102235	G	A	7545.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	111833488	rs34698010	C	CCT	12548.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	111833517	rs12026825	G	A	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	111854207	rs4839122	T	C	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	111854223	rs6537695	C	T	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	111854755	rs4423003	A	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	111857087	rs2786151	C	T	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr1	111857154	rs2786152	T	C	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr1	111858291	rs2786155	T	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr1	111858444	rs2786156	C	T	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:190,153:0.45:343
chr1	111858499	rs6661725	A	G	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:121,97:0.44:218
chr1	111858525	rs371155945	TAAATATAAGAATAAGA	T	2134.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.826;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=12.373;MLEAC=1;MLEAF=0.500;MQ=61.49;MQRankSum=5.566;QD=15.81;ReadPosRankSum=-0.077;SOR=1.686;set=HC	GT:AD:AF:DP	0/1:77,58:0.43:135
chr1	111858526	.	AAATATAAGAATAAGACACTATCCTTGGCTT	CAATATAAGAATAAGACACTATCCTTGGCTT	2912	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=61.98;NF=2,6;NR=13,13;PP=2912,1324;QD=20;SC=TTGTCAGGCTAAATATAAGAA;SbPval=0.28;Source=Platypus;TC=57;TCF=4;TCR=53;TR=15,19;WE=111858563;WS=111858516;set=Platypus	GT:AD:AF:DP	0/1:66,19:0.22:85
chr1	111858526	.	AAATATAAGAATAAGACACTATCCTTGGCTT	A	2912	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=61.98;NF=2,6;NR=13,13;PP=2912,1324;QD=20;SC=TTGTCAGGCTAAATATAAGAA;SbPval=0.28;Source=Platypus;TC=57;TCF=4;TCR=53;TR=15,19;WE=111858563;WS=111858516;set=Platypus	GT:AD:AF:DP	0/1:42,15:0.26:57
chr1	111858542	rs376128132	CACTATCCTTGGCTT	C	2187.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=6.796;MLEAC=1;MLEAF=0.500;MQ=61.82;MQRankSum=4.937;QD=18.70;ReadPosRankSum=0.564;SOR=1.413;set=HC	GT:AD:AF:DP	0/1:59,58:0.50:117
chr1	111858589	rs2786157	G	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr1	111858603	rs2786158	G	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr1	111861714	rs2786161	T	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,59:0.53:111
chr1	111861841	rs2275253	A	G	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr1	111861898	rs12046235	C	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:91,72:0.44:163
chr1	111861974	rs2275254	T	C	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=0.279;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:75,63:0.46:138
chr1	111862952	rs2256721	T	G	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:124,120:0.49:244
chr1	111892905	rs3820443	T	C	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr1	111893708	rs10158004	G	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr1	111893788	rs371457544	GTTTTT	G	1120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.027;QD=19.32;ReadPosRankSum=0.508;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:19,39:0.67:58
chr1	111893958	rs1668	A	G	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:79,73:0.48:152
chr1	111957097	rs7825	C	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr1	111957311	rs10067	G	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:85,61:0.42:146
chr1	111957693	rs2485319	A	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:81,68:0.46:149
chr1	111964144	rs1264885	G	C	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr1	111968121	rs1264887	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	111969294	rs1264892	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:88,50:0.36:138
chr1	111969432	rs1264893	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr1	111969719	rs1264894	A	G	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr1	111970431	.	TACAC	T	289.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DP=65;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.319;QD=24.15;ReadPosRankSum=1.097;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	111985229	rs1264902	G	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	111991845	rs1270853	C	A	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:178,194:0.52:372
chr1	111992095	rs1264899	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:102,74:0.42:176
chr1	112020222	rs3831358	GC	G	1883.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:8,46:0.85:54
chr1	112020224	rs115634476	C	A	1892.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:10,48:0.83:58
chr1	112020238	rs2211494	A	C	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	112026198	rs9025	T	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	112029189	rs2252740	C	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=-0.209;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr1	112029193	rs2252739	A	G	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.12;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	112029325	rs2800906	A	G	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	112029414	rs2800907	C	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	112031278	rs41282516	G	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr1	112032126	rs58712964	T	C	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=1.268;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:68,52:0.43:120
chr1	112032131	rs61002431	T	G	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.526;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:74,57:0.44:131
chr1	112032205	rs7544118	C	T	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:114,94:0.45:208
chr1	112033456	rs3831359	G	GA	1521.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr1	112033515	rs2252198	T	C	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.90;ReadPosRankSum=-0.238;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr1	112033519	rs2252197	A	G	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.78;ReadPosRankSum=-0.950;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chr1	112042632	rs2229155	A	G	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr1	112042787	rs35511654	T	G	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:173,141:0.45:314
chr1	112106342	rs1591711	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr1	112106444	rs1591712	G	A	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	112234084	rs10489469	G	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:64,76:0.54:140
chr1	112237915	rs7525307	A	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	112240038	.	CT	C	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.472;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:99,53:0.35:152
chr1	112251983	rs3738300	C	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:143,124:0.46:267
chr1	112269766	.	A	G	1543.77	.	AC=1;AF=0.500;AN=2;DP=182;set=Intersection	GT:AD:AF:DP	0/1:107,74:0.41:181
chr1	112269872	rs197434	G	A	14322.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	112305406	.	TA	T	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.495;QD=2.44;ReadPosRankSum=-1.782;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:83,48:0.37:131
chr1	112539061	rs2366125	A	G	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=1.019;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:116,127:0.52:243
chr1	112991698	rs2256883	T	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:80,67:0.46:147
chr1	112999227	rs1175641	G	A	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:78,85:0.52:163
chr1	113052155	rs3790605	C	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	113052186	rs3790606	G	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr1	113063125	rs910697	A	G	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	113068577	rs35147679	C	T	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=1.514;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:80,53:0.40:133
chr1	113083439	rs10745330	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	113098534	rs6658555	C	T	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.674;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:110,108:0.50:218
chr1	113113167	rs71584748	GTATATATATATATA	G	1114.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	113140583	rs12049572	T	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,48:0.49:97
chr1	113162538	rs199900757	C	G	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-1.200;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:40,33:0.45:73
chr1	113202571	rs12120956	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	113202585	rs114534388	T	C	127.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	113236681	rs3748656	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:106,67:0.39:173
chr1	113237171	rs883593	A	G	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr1	113238665	rs71584764	T	TA	153.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr1	113239382	rs17030651	G	A	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:142,150:0.51:292
chr1	113240790	rs12133583	G	T	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr1	113241052	rs2306940	T	C	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:106,107:0.50:213
chr1	113243048	rs6679	C	T	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-2.738;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:108,70:0.39:178
chr1	113244433	rs2279500	T	C	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:68,84:0.55:152
chr1	113246506	rs2306937	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	113247713	rs35221527	G	A	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr1	113248365	rs954679	A	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	113252614	rs41310100	C	A	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	113254484	rs4839258	A	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	113254648	rs78366259	A	G	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr1	113255389	rs10857971	C	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	113456546	rs1049434	A	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:87,100:0.53:187
chr1	113459676	rs71659381	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr1	113460676	rs149491709	CAATA	C	241.92	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	113460687	rs201021807	T	G	250.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.86;ReadPosRankSum=0.589;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	113616382	rs56062000	G	GA	681.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	113636924	rs1216802	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	113657018	.	A	AT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=5.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.933;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	113657092	rs1216793	A	C	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	113658887	rs1216791	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr1	113659065	rs10541977	ACT	A	3593.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:108,98:0.48:206
chr1	113666351	rs1728222	G	T	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.13;ReadPosRankSum=2.219;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	113666383	.	G	GTGTGTGTT	253	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=28;MQ=60.0;NF=6;NR=0;PP=253;QD=42.6666666667;SC=GTGTGTGTGTGATTTCAGTGT;SbPval=1.0;Source=Platypus;TC=18;TCF=12;TCR=6;TR=6;WE=113666391;WS=113666373;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	114092111	.	G	GT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.612;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	114137013	rs3834733	C	CAT	1063.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	114157326	rs3761932	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	114161116	rs1217200	C	A	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.49;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	114191994	rs1743594	G	A	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=1.543;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:80,72:0.47:152
chr1	114196364	rs2359174	T	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	114196495	rs2359173	A	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr1	114224782	rs11438160	A	AT,ATT	2247.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.914;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=13.46;ReadPosRankSum=0.507;SOR=0.951;set=HC	GT:AD:AF:DP	1/2:36,57,74:0.34,0.44:167
chr1	114226705	rs141967702	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.913;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	114234690	rs12138638	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr1	114240319	rs3835263	T	TA	6280.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	114242122	rs3752954	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr1	114242250	rs3752953	C	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.260;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:41,34:0.45:75
chr1	114249382	rs6698586	C	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	114267347	rs1230640	C	T	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	114280717	rs2273758	A	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	114309873	rs34345741	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=1.569;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chr1	114339956	rs34169583	C	CTAAA	1096.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	114372332	rs57877024	TA	T	570.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr1	114377093	rs1599971	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	114377148	rs1970559	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr1	114377568	rs2476601	A	G	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:2,260:0.99:262
chr1	114400195	rs11386228	G	GA	208.14	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr1	114401231	rs1217418	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	114401904	rs1217419	T	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	114423653	rs1217382	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr1	114424601	rs1217381	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	114429340	rs1746860	T	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr1	114438951	rs1217401	A	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:117,79:0.40:196
chr1	114444026	.	C	T	1559.77	.	AC=1;AF=0.500;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	0/1:67,73:0.52:140
chr1	114449826	.	G	GTT	44.94	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	114472218	rs1217441	A	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	114495348	.	G	GT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.454;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr1	114512939	rs3811018	A	T	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	114515717	rs2358996	G	A	17543.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr1	114522285	rs12728679	A	G	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr1	114523465	rs3789614	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	114634485	rs1053135	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	114641685	rs2774285	A	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	114680540	rs17032441	C	T	5003.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:289,247:0.46:536
chr1	114940632	rs5777192	CA	C	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:6,69:0.92:75
chr1	114948281	rs6537825	A	G	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	115128087	rs222493	A	G	99.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	115144703	rs28398	A	G	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	115165472	rs222502	T	A	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	115166350	rs148413143	ATTGT	A	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	115168097	rs12136548	T	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr1	115218413	rs2070986	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr1	115220420	.	CTCCT	C	835.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=37.99;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	115222434	rs761755	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	115231254	rs61752479	G	A	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:106,70:0.40:176
chr1	115236057	rs17602729	G	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:49,51:0.51:100
chr1	115236251	.	ATTTTC	A	1049.73	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr1	115238016	.	C	CA	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.622;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr1	115256669	rs969273	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr1	115268065	rs139626410	G	C	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr1	115280193	.	C	CA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.145;QD=0.34;ReadPosRankSum=1.771;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:98,20:0.17:118
chr1	115398044	rs60659641	GC	G	989.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	115399940	rs360614	T	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr1	115401136	rs360615	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	115420905	rs360636	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr1	115452848	rs12117860	G	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.41;ReadPosRankSum=0.584;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	115488821	rs360674	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.40;ReadPosRankSum=0.712;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr1	115524216	rs12026343	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	115576023	rs10776792	A	G	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	115576482	rs28566771	C	G	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr1	115601615	rs7523818	A	G	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	115604681	rs11102881	A	G	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:87,97:0.53:184
chr1	115604798	rs10776795	C	T	4456.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:261,235:0.47:496
chr1	115631924	rs4240540	C	T	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	115829313	rs6330	G	A	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:117,91:0.44:208
chr1	116283343	rs9428083	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr1	116283526	rs7538337	G	A	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	116287682	rs9428211	T	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	116311198	rs4074537	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	116534952	rs10923941	GC	TT	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr1	116569530	rs2488429	G	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.721;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr1	116577981	rs1935828	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	116579951	rs138938338	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:73,54:0.43:127
chr1	116605423	rs3748743	C	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:91,92:0.50:183
chr1	116607254	rs1281748	G	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	116609126	rs3833541	TC	T	2484.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:121,93:0.43:214
chr1	116655492	rs1146356	A	G	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr1	116663724	rs41275550	C	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:96,102:0.52:198
chr1	116666569	rs960675	T	A	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr1	116670774	rs10754431	A	G	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=8.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.822;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:50,46:0.48:96
chr1	116676035	rs10802159	A	C	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr1	116940481	.	C	CT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=5.616;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.619;QD=1.24;ReadPosRankSum=1.893;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:105,29:0.22:134
chr1	117078921	rs41275570	A	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	117122285	.	G	GTCC	1141.73	.	AC=1;AF=0.500;AN=2;DP=334;set=Intersection	GT:AD:AF:DP	0/1:168,68:0.29:236
chr1	117122288	rs647711	G	C	4092.73	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:156,127:0.45:283
chr1	117131773	.	C	T	341.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr1	117142531	rs631461	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr1	117236970	rs614477	G	C	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	117452968	.	C	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-1.368;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr1	117487270	rs56209138	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	117487710	rs10159095	AT	GA	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	117503940	rs34625170	G	A	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:134,125:0.48:259
chr1	117527645	rs36119404	GTCT	G	1874.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr1	117529458	rs10801922	G	A	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:158,119:0.43:277
chr1	117555898	rs2764849	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	117559598	rs60689130	C	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	117559726	rs2249265	A	G	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr1	117560818	rs3736908	A	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr1	117602960	rs2244501	C	A	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	117603188	rs2244406	G	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	117605130	.	C	CT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=6.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-0.219;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr1	117617705	rs998532	A	G	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	117618067	rs1289673	C	T	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	117618722	rs1289672	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	117622286	rs2801939	A	G	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	117631391	rs1555792	T	C	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	117656088	rs1289658	A	G	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=1.419;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:68,79:0.54:147
chr1	117656276	rs1290530	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	117660608	rs1289655	C	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	117660754	rs749902	C	T	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:112,138:0.55:250
chr1	117663913	rs3795655	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-1.420;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr1	117690272	rs10754339	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	117715026	rs6657810	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	117715987	rs140251705	A	AAC,AACAC	906.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=54;set=Intersection	GT:AF:DP	1/2:0.53,0.33:36
chr1	117957288	rs1289948	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr1	118065841	rs1290558	A	G	745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.269;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:73,43:0.37:116
chr1	118165328	rs844108	T	C	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr1	118165691	rs1630312	C	T	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:113,104:0.48:217
chr1	118165973	rs1627787	C	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:84,63:0.43:147
chr1	118166096	rs2884587	C	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:130,98:0.43:228
chr1	118320859	rs1775749	T	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	118321119	rs114485606	T	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:76,28:0.27:104
chr1	118484265	rs10733098	G	A	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	118526592	rs4347199	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	118623681	.	TAC	T	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.442;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	118634812	rs41310092	G	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	118693217	rs1935992	T	C	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=1.869;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr1	119456589	rs11586475	C	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	119466275	rs4659129	A	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr1	120057158	rs6203	C	T	3402.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:246,172:0.41:418
chr1	120057246	rs1047303	C	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr1	120165826	rs12076924	C	T	19589.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:0,737:1.00:737
chr1	120166681	rs12067843	G	A	12650.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr1	120267505	rs483180	C	G	12137.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr1	120267597	rs3838425	GC	G	2871.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:49,90:0.65:139
chr1	120277194	rs59445927	TTAA	T	1080.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.022;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:75,32:0.30:107
chr1	120285546	rs543703	G	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:184,89:0.33:273
chr1	120293367	rs667246	T	C	1524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.178;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:181,91:0.33:272
chr1	120296033	.	A	AAC	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=-0.000;DP=49;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.45;ReadPosRankSum=0.057;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr1	120300054	rs1992376	G	A	4098.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:90,187:0.68:277
chr1	120302419	rs12121219	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:102,60:0.37:162
chr1	120336785	rs1052972	C	T	2044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.993;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:284,127:0.31:411
chr1	120336876	rs699778	T	G	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:49,132:0.73:181
chr1	120337384	rs947270	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr1	120337403	rs947271	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr1	120341256	rs71672737	G	A	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:56,118:0.68:174
chr1	120378678	rs3009182	C	T	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	120380008	rs3009184	T	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	120381686	rs5777416	G	GT,GTGTGAGTCA	2538.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	1/1:1.00:50
chr1	120381687	.	G	C	783	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=29;NR=4;PP=783;QD=24.7809458348;SC=TGATTATATGGAGCACCTAGC;SbPval=0.85;Source=Platypus;TC=49;TCF=40;TCR=9;TR=33;WE=120381695;WS=120381682;set=Platypus	GT:AD:AF:DP	1/1:16,33:0.67:49
chr1	120381687	rs34302627	G	GTGAGTCAC	2538.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.78;SOR=2.746;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	120384205	rs2994820	A	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	120387120	rs12405228	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr1	120437718	rs2793823	G	A	12433.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:267,570:0.68:837
chr1	120458924	rs3795666	G	A	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:87,151:0.63:238
chr1	120464165	rs835573	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr1	120466754	rs17024521	G	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	120477998	rs2453056	C	A	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr1	120478285	rs5025718	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-0.400;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:76,34:0.31:110
chr1	120478352	rs17024536	T	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr1	120480394	rs2453057	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	120484421	rs2493420	G	A	2540.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:49,115:0.70:164
chr1	120491301	rs17024559	G	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr1	120506032	rs17024577	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	120512104	rs2493409	T	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	120534091	.	T	C	61.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.00;QD=20.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	120539213	rs2691745	G	T	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=22.469;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-11.944;QD=3.62;ReadPosRankSum=1.190;SOR=3.421;set=HC	GT:AD:AF:DP	0/1:123,33:0.21:156
chr1	120539331	rs2124109	C	T	4918.77	.	AC=1;AF=0.500;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	0/1:576,287:0.33:863
chr1	120572547	rs141882865	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=6.88;ReadPosRankSum=0.431;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	120572572	rs146242578	C	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=7.41;ReadPosRankSum=0.284;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	120611496	rs138685616	C	A	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.646;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=13.351;MLEAC=1;MLEAF=0.500;MQ=50.53;MQRankSum=-6.465;QD=9.08;ReadPosRankSum=-5.799;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:95,45:0.32:140
chr1	120611498	rs2489097	G	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=8.128;MLEAC=1;MLEAF=0.500;MQ=50.24;MQRankSum=-1.704;QD=1.68;ReadPosRankSum=-4.060;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:121,21:0.15:142
chr1	120611554	rs75248693	TT	CG	3427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.718;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=3.118;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.23;MQRankSum=-9.278;QD=8.90;ReadPosRankSum=-0.458;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:282,103:0.27:385
chr1	120611715	rs2794167	A	G	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=6.991;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-2.924;QD=2.49;ReadPosRankSum=2.090;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:239,63:0.21:302
chr1	120611758	rs61790276	G	A	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=0.465;QD=5.29;ReadPosRankSum=1.966;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:135,55:0.29:190
chr1	120611830	rs61790277	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr1	120611876	rs11801062	C	T	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr1	120611964	rs11810554	G	C	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:115,72:0.39:187
chr1	120612006	rs4021006	G	A	8197.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:18,252:0.93:270
chr1	120612031	.	G	GCCTCCTCCT	2974	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=1;MGOF=41;MMLQ=23;MQ=49.89;NF=14;NR=54;PP=2974;QD=20;SC=CTTCTCGGTCGCCTCCTCCTC;SbPval=0.46;Source=Platypus;TC=174;TCF=34;TCR=140;TR=68;WE=120612050;WS=120612021;set=Platypus	GT:AD:AF:DP	0/1:106,68:0.39:174
chr1	120612040	.	T	TCCTCCTCCG,TCCTCCG	2490.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=301;set=Intersection	GT:AF:DP	0/1:0.27:287
chr1	120612154	rs56375229	C	G	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.893;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=5.779;MLEAC=1;MLEAF=0.500;MQ=54.61;MQRankSum=-5.361;QD=12.48;ReadPosRankSum=1.472;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:85,47:0.36:132
chr1	120612163	rs55899574	C	A	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=7.390;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-5.835;QD=13.33;ReadPosRankSum=1.344;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:79,46:0.37:125
chr1	120612168	rs11801102	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-2.307;QD=2.74;ReadPosRankSum=1.919;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:97,26:0.21:123
chr1	120612265	rs375584849	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.296;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.602;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=-5.280;QD=8.85;ReadPosRankSum=-0.820;SOR=1.825;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr1	120612269	.	A	G	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=8.154;MLEAC=1;MLEAF=0.500;MQ=48.89;MQRankSum=-3.196;QD=2.65;ReadPosRankSum=-1.968;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	121115761	rs150166046	T	G	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr1	121115786	rs199825051	C	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=22.641;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-1.836;QD=1.17;ReadPosRankSum=0.413;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:145,35:0.19:180
chr1	121116121	rs201302047	T	C	243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=46.74;MQRankSum=-2.250;QD=4.43;ReadPosRankSum=-0.626;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr1	121116647	rs2772072	T	A	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=10.606;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-8.938;QD=3.43;ReadPosRankSum=-0.019;SOR=0.225;set=HC	GT:AD:AF:DP	0/1:111,44:0.28:155
chr1	121116733	rs61806691	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=9.347;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-12.141;QD=0.99;ReadPosRankSum=1.721;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:352,66:0.16:418
chr1	144013853	rs6600697	T	C	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.219;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=3.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.626;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:314,105:0.25:419
chr1	144013865	rs6600696	T	G	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.344;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:352,120:0.25:472
chr1	144014051	rs1884147	G	A	3882.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:390,209:0.35:599
chr1	144014068	rs1884146	T	C	6461.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:170,304:0.64:474
chr1	144052641	.	CAA	C	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=12.522;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=0.000;QD=6.43;ReadPosRankSum=1.115;SOR=2.522;set=HC	GT:AD:AF:DP	0/1:41,40:0.49:81
chr1	144676632	rs75239917	T	C	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	144676646	rs75500033	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	144680070	rs150219082	T	C	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.94;QD=27.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	144854412	rs77812232	A	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr1	144854491	rs2798856	T	G	3288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=3.002;QD=13.00;ReadPosRankSum=-1.862;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:163,90:0.36:253
chr1	144854497	rs2653676	A	G	3448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=3.203;QD=12.68;ReadPosRankSum=-1.829;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:175,97:0.36:272
chr1	144854501	rs142453097	CCT	C	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=1.187;QD=2.22;ReadPosRankSum=0.657;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:245,34:0.12:279
chr1	144854528	rs78461771	A	G	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.566;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-13.261;QD=3.44;ReadPosRankSum=0.772;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:296,51:0.15:347
chr1	144854537	rs3851872	T	C	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.996;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.238;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-12.425;QD=3.84;ReadPosRankSum=-1.808;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:296,58:0.16:354
chr1	144854564	rs147331822	G	A	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=3.024;QD=3.25;ReadPosRankSum=2.417;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:286,94:0.25:380
chr1	144854581	rs78371650	T	C	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-11.670;QD=4.11;ReadPosRankSum=-0.938;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:282,58:0.17:340
chr1	144854594	rs79028512	G	T	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-10.846;QD=4.39;ReadPosRankSum=1.838;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:249,50:0.17:299
chr1	144854597	rs3851873	T	C	6283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-4.150;QD=22.13;ReadPosRankSum=1.450;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:123,161:0.57:284
chr1	144854597	.	TC	CT	2653	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=2;MGOF=26;MMLQ=27;MQ=58.5;NF=45;NR=50;PP=2653;QD=20;SC=TCTGAAGGAGTCGCTCCTGTT;SbPval=0.58;Source=Platypus;TC=268;TCF=128;TCR=140;TR=95;WE=144854606;WS=144854571;set=Platypus	GT:AD:AF:DP	1/0:173,95:0.35:268
chr1	144854598	rs3863691	C	T	4043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=3.768;QD=14.44;ReadPosRankSum=0.390;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:172,108:0.39:280
chr1	144859720	rs678786	G	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr1	144860026	rs1699819	G	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:86,77:0.47:163
chr1	144865850	rs1613780	G	T	4366.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:234,217:0.48:451
chr1	144866509	rs924667	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:157,93:0.37:250
chr1	144866643	rs1620560	G	A	6625.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:491,350:0.42:841
chr1	144866662	rs1064044	T	C	6218.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:445,322:0.42:767
chr1	144868170	rs1628310	C	T	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:118,115:0.49:233
chr1	144868204	rs1747951	A	C	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr1	144871738	rs1698605	C	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr1	144871755	rs1778159	A	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr1	144871782	rs1778158	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr1	144871889	rs1698606	A	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=-0.139;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr1	144873818	rs1610566	A	G	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr1	144873840	rs1627335	A	G	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:96,79:0.45:175
chr1	144873887	rs1699787	C	T	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:188,180:0.49:368
chr1	144873962	rs11341221	CT	C	1923.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=4.868;QD=2.68;ReadPosRankSum=2.454;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:613,104:0.15:717
chr1	144874038	rs1419160	T	C	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:177,186:0.51:363
chr1	144874070	rs1610565	C	T	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:85,91:0.52:176
chr1	144874088	rs1419158	G	C	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr1	144874641	rs1610771	G	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr1	144874760	rs1610774	T	C	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:175,175:0.50:350
chr1	144874815	rs1778155	T	C	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.221;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=1.007;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.971;QD=5.10;ReadPosRankSum=0.701;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:183,85:0.32:268
chr1	144874835	rs111839403	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=5.143;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-1.691;QD=1.80;ReadPosRankSum=-1.414;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:191,42:0.18:233
chr1	144874950	rs1747957	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:45,73:0.62:118
chr1	144877176	rs2762875	C	T	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr1	144877366	rs1807092	A	G	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr1	144877390	rs1807093	G	A	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr1	144879264	rs2798901	A	G	6087.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:95,276:0.74:371
chr1	144879339	rs145959230	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:162,77:0.32:239
chr1	144879375	rs1747958	T	C	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:124,127:0.51:251
chr1	144880832	rs12568796	T	C	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=1.592;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:139,84:0.38:223
chr1	144881711	rs937714	T	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.367;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=8.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=1.688;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr1	144882581	rs1699836	A	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:102,69:0.40:171
chr1	144882823	rs1698647	C	T	10392.77	.	AC=1;AF=0.500;AN=2;DB;DP=1104;set=Intersection	GT:AD:AF:DP	0/1:579,522:0.47:1101
chr1	144882912	rs1698646	G	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-0.226;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:254,50:0.16:304
chr1	144886063	rs1625285	T	C	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,46:0.35:130
chr1	144886092	rs1343472	C	T	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:113,71:0.39:184
chr1	144886197	rs1698624	A	T	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:167,127:0.43:294
chr1	144886409	rs1620507	A	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr1	144890833	rs11447	T	C	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr1	144892089	rs1614098	G	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr1	144892149	rs1698709	G	A	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-2.683;QD=7.51;ReadPosRankSum=-0.932;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:113,79:0.41:192
chr1	144892368	rs1698708	A	T	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:154,99:0.39:253
chr1	144895460	rs1698703	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:95,35:0.27:130
chr1	144909956	rs638260	G	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.583;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:72,15:0.17:87
chr1	144910082	rs638780	A	G	1268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.69;ReadPosRankSum=-0.210;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:68,63:0.48:131
chr1	144912153	rs1628172	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:7,42:0.86:49
chr1	144912233	rs1629011	C	T	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=0.828;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:42,51:0.55:93
chr1	144915412	rs1698684	T	C	1885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.133;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:129,100:0.44:229
chr1	144915561	rs1778111	G	A	4084.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:121,193:0.61:314
chr1	144915624	rs1778112	G	A	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr1	144916748	rs1747930	C	G	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:204,172:0.46:376
chr1	144917546	rs1698682	A	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:107,77:0.42:184
chr1	144917841	rs1698681	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr1	144918957	rs1061308	T	A	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:257,236:0.48:493
chr1	144919094	rs1698680	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr1	144922109	rs1343469	A	G	11169.77	.	AC=1;AF=0.500;AN=2;DB;DP=1109;set=Intersection	GT:AD:AF:DP	0/1:573,536:0.48:1109
chr1	144922171	rs1343470	C	T	13784.77	.	AC=1;AF=0.500;AN=2;DB;DP=1422;set=Intersection	GT:AD:AF:DP	0/1:723,695:0.49:1418
chr1	144922583	rs1359300	G	A	7682.77	.	AC=1;AF=0.500;AN=2;DB;DP=797;set=Intersection	GT:AD:AF:DP	0/1:417,376:0.47:793
chr1	144923576	rs112261846	A	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=0.005;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr1	144923823	rs11268079	TAGGAAGAAACGGCA	T	8485.73	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:177,217:0.55:394
chr1	144930562	rs199782170	A	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.582;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:104,18:0.15:122
chr1	144930571	rs2762866	C	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr1	144930596	rs2762867	C	A	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:96,101:0.51:197
chr1	144930940	rs2147326	T	C	6706.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:300,311:0.51:611
chr1	144931087	rs41315684	T	C	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.445;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.484;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:240,70:0.23:310
chr1	144931330	rs2762745	C	T	10225.77	.	AC=1;AF=0.500;AN=2;DB;DP=1005;set=Intersection	GT:AD:AF:DP	0/1:508,496:0.49:1004
chr1	144931392	rs2798893	G	A	6900.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:430,341:0.44:771
chr1	144931461	rs41315685	A	T	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:420,200:0.32:620
chr1	144931727	rs2985363	G	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.475;QD=2.18;ReadPosRankSum=1.393;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:182,43:0.19:225
chr1	144946510	rs2488977	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr1	144946768	rs2762733	G	A	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:118,126:0.52:244
chr1	144946876	rs2798887	C	T	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=-0.423;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	144951959	rs142985095	T	C	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=3.003;QD=1.07;ReadPosRankSum=-1.528;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:453,78:0.15:531
chr1	144951973	rs77471170	T	C	10209.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:208,456:0.69:664
chr1	144952078	rs71220421	C	A	7049.77	.	AC=1;AF=0.500;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	0/1:602,369:0.38:971
chr1	144952207	rs3121544	C	T	1230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-11.734;QD=2.25;ReadPosRankSum=1.745;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:440,108:0.20:548
chr1	144952220	rs139438772	C	T	3691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=47.27;MQRankSum=-12.970;QD=7.74;ReadPosRankSum=2.586;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:289,188:0.39:477
chr1	144952255	rs148545794	G	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=6.023;MLEAC=1;MLEAF=0.500;MQ=47.06;MQRankSum=-8.192;QD=0.82;ReadPosRankSum=-0.577;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:288,50:0.15:338
chr1	144994658	rs1664022	C	A	6857.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:428,348:0.45:776
chr1	144994861	rs2442640	C	T	18003.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:82,738:0.90:820
chr1	145014096	.	G	A	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=5.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.712;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:108,29:0.21:137
chr1	145014103	rs1778711	G	C	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.746;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:87,66:0.43:153
chr1	145014186	rs67011214	GA	G	3818.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=5.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.669;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:357,145:0.29:502
chr1	145014210	rs1778710	G	A	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.303;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:601,170:0.22:771
chr1	145014263	rs1778708	C	T	8790.77	.	AC=1;AF=0.500;AN=2;DB;DP=1232;set=Intersection	GT:AD:AF:DP	0/1:752,477:0.39:1229
chr1	145014324	.	AC	A	2186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;ClippingRankSum=0.000;DP=1169;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.414;QD=1.89;ReadPosRankSum=2.083;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:989,170:0.15:1159
chr1	145014394	rs1107089	C	T	5589.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:279,171:0.38:450
chr1	145014411	rs1778707	T	C	4936.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:210,132:0.39:342
chr1	145014436	rs3856006	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.276;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=5.142;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.724;QD=0.98;ReadPosRankSum=-0.251;SOR=1.350;set=HC	GT:AD:AF:DP	0/1:187,28:0.13:215
chr1	145016020	rs657162	T	G	21616.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,789:1.00:789
chr1	145016032	rs112952246	C	CA	1004.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.413;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:426,120:0.22:546
chr1	145016034	.	A	AC	1777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DP=624;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=3.05;ReadPosRankSum=2.895;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:424,159:0.27:583
chr1	145016076	rs75512061	C	T	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.060;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:208,49:0.19:257
chr1	145017784	rs11300211	CT	C	518.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.373;QD=12.35;ReadPosRankSum=1.601;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:6,36:0.86:42
chr1	145017831	.	T	TCCCTCCCCTCCCCTCCCTTCCCCCTCCCTCCCTC	845.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=11.800;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-0.832;QD=21.14;ReadPosRankSum=4.029;SOR=3.567;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	145017851	.	T	TCCTC	1169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.928;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.111;QD=10.63;ReadPosRankSum=2.450;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:62,48:0.44:110
chr1	145018023	rs2799192	G	T	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:137,92:0.40:229
chr1	145018102	.	G	GAGAA	776.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.631;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:46,24:0.34:70
chr1	145021024	rs1778692	G	C	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.284;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=8.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.275;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:237,82:0.26:319
chr1	145021089	rs1613515	G	A	6905.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:443,338:0.43:781
chr1	145038686	rs67176560	AG	A	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=3.596;QD=2.62;ReadPosRankSum=-0.503;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:127,30:0.19:157
chr1	145038736	rs1663882	C	G	2995.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:207,159:0.43:366
chr1	145038815	rs2442664	A	G	20232.77	.	AC=2;AF=1.00;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr1	145038952	rs1663881	C	T	6422.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:447,318:0.42:765
chr1	145039026	rs1663880	T	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:222,147:0.40:369
chr1	145039523	rs1663879	G	T	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.879;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.438;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:462,88:0.16:550
chr1	145039562	rs1663878	C	T	7614.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	0/1:530,379:0.42:909
chr1	145039821	rs7554603	C	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.768;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.580;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:250,45:0.15:295
chr1	145074939	rs1663854	T	C	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.463;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:327,105:0.24:432
chr1	145074975	rs56128713	G	A	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.070;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:456,83:0.15:539
chr1	145075208	rs6424335	T	A	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.789;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:133,48:0.27:181
chr1	145075234	rs9424815	C	T	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-2.421;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:98,24:0.20:122
chr1	145075519	rs2596337	G	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr1	145075683	rs2762779	C	T	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.597;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:373,108:0.22:481
chr1	145075775	rs76199660	G	A	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-2.148;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:633,106:0.14:739
chr1	145075854	rs1663853	G	C	5822.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:457,304:0.40:761
chr1	145075923	rs6656135	C	T	2578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-2.918;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:438,163:0.27:601
chr1	145103844	rs2590144	G	A	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-1.410;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:270,107:0.28:377
chr1	145103947	rs2794062	T	C	4031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=970;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.571;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:705,264:0.27:969
chr1	145104052	.	AGT	A	2689.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.367;QD=8.18;ReadPosRankSum=-0.273;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:242,87:0.26:329
chr1	145109430	rs2442653	A	T	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.585;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=9.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.574;SOR=1.568;set=HC	GT:AD:AF:DP	0/1:217,42:0.16:259
chr1	145109456	rs7553975	C	T	2207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.115;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:300,124:0.29:424
chr1	145109468	rs2442652	A	G	18552.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr1	145109493	rs2442651	C	T	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-3.056;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:610,144:0.19:754
chr1	145109549	rs2596331	G	T	4910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;ClippingRankSum=0.000;DB;DP=1425;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-2.190;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:1086,336:0.24:1422
chr1	145109583	rs2794053	C	A	15155.77	.	AC=1;AF=0.500;AN=2;DB;DP=1640;set=Intersection	GT:AD:AF:DP	0/1:891,744:0.46:1635
chr1	145109661	rs2655551	G	A	4818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=1788;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.050;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:1399,379:0.21:1778
chr1	145109809	rs2596327	T	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.372;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:125,38:0.23:163
chr1	145112284	.	CCG	C	3556.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.633;ClippingRankSum=0.000;DP=346;ExcessHet=3.0103;FS=7.361;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.193;QD=10.46;ReadPosRankSum=0.207;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:239,101:0.30:340
chr1	145112287	rs2794042	T	C	1637.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=1.516;QD=4.76;ReadPosRankSum=1.466;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:250,94:0.27:344
chr1	145112288	.	G	GCA	3583.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DP=357;ExcessHet=3.0103;FS=8.314;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.202;QD=10.18;ReadPosRankSum=-0.561;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:248,104:0.30:352
chr1	145112313	rs2596302	T	C	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=2.756;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:351,119:0.25:470
chr1	145112414	rs2590131	T	C	11067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=1742;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=1.115;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:1371,366:0.21:1737
chr1	145112420	rs2794041	C	T	5484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.255;ClippingRankSum=0.000;DB;DP=1821;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.284;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:1405,410:0.23:1815
chr1	145112428	rs2794040	C	T	11221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=1919;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=1.156;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:1515,398:0.21:1913
chr1	145112485	rs2794039	C	T	3909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=1678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.031;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:1330,336:0.20:1666
chr1	145115658	.	TATTTTTAA	T	1691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.691;QD=3.75;ReadPosRankSum=1.115;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:353,98:0.22:451
chr1	145115810	rs2655557	A	G	21076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=1943;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=0.419;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:1143,795:0.41:1938
chr1	145115820	rs2655558	T	C	3210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DB;DP=1898;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.025;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:1543,349:0.18:1892
chr1	145139088	rs150935736	C	CG	3504.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.46;QD=38.51;SOR=9.044;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	5405.73	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:12,134:0.92:146
chr1	145209869	rs80228373	AA	CG	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=4.593;JOINED;MLEAC=1;MLEAF=0.500;MQ=49.41;MQRankSum=-11.755;QD=1.70;ReadPosRankSum=-3.521;SOR=1.212;set=HC	GT:AD:AF:DP	0/1:663,78:0.11:741
chr1	145210041	.	C	A	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630;ClippingRankSum=0.000;DP=503;ExcessHet=3.0103;FS=0.663;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-1.847;QD=2.66;ReadPosRankSum=-0.241;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:396,107:0.21:503
chr1	145273302	rs201646101	A	G	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=1668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-2.061;QD=0.63;ReadPosRankSum=0.285;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:1443,224:0.13:1667
chr1	145273345	rs75987820	T	C	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=2399;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-1.315;QD=0.68;ReadPosRankSum=-1.683;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:2068,330:0.14:2398
chr1	145273473	rs202082259	T	C	2700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=1510;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=-2.816;QD=1.79;ReadPosRankSum=1.022;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:1240,269:0.18:1509
chr1	145273520	rs2793994	G	A	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=47.37;MQRankSum=-6.138;QD=4.15;ReadPosRankSum=0.232;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:474,157:0.25:631
chr1	145281247	rs74721027	T	A	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.775;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.500;MQ=45.94;MQRankSum=-4.183;QD=9.31;ReadPosRankSum=2.016;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:70,46:0.40:116
chr1	145281408	rs201164506	C	T	3311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=2257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.43;MQRankSum=-2.818;QD=1.47;ReadPosRankSum=-0.667;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:1876,379:0.17:2255
chr1	145281543	rs8002	C	T	8640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=1691;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-1.651;QD=5.11;ReadPosRankSum=0.291;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:1200,491:0.29:1691
chr1	145281613	rs12120756	C	A	4979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.779;ClippingRankSum=0.000;DB;DP=1080;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-0.365;QD=4.61;ReadPosRankSum=0.275;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:878,202:0.19:1080
chr1	145281633	rs28576333	C	A	4366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.122;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-0.086;QD=4.58;ReadPosRankSum=0.726;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:787,166:0.17:953
chr1	145281780	rs190671398	T	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=14.161;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-2.659;QD=0.94;ReadPosRankSum=0.087;SOR=1.602;set=HC	GT:AD:AF:DP	0/1:276,47:0.15:323
chr1	145281824	rs4089950	T	G	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.733;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.500;MQ=54.21;MQRankSum=0.184;QD=3.51;ReadPosRankSum=-0.008;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:191,49:0.20:240
chr1	145282093	rs199946317	G	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:250,115:0.32:365
chr1	145456732	rs375314716	GA	G	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.620;QD=1.17;ReadPosRankSum=-1.332;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:361,111:0.24:472
chr1	145507826	rs872786	A	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr1	145510376	rs147038428	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.50;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	145515057	rs148070621	CA	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.550;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr1	145517561	rs4471211	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr1	145531980	rs4384171	T	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	145532010	rs370509438	CTG	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.958;QD=1.59;ReadPosRankSum=-1.331;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr1	145532032	.	GTGTGTGTGTGTGTGTGTGTA	G	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.511;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=6.833;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=1.047;QD=6.14;ReadPosRankSum=1.071;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:90,48:0.35:138
chr1	145532549	rs1328584	T	C	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	145532994	rs34834904	GT	G	1850.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.899;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:129,54:0.30:183
chr1	145533001	rs35103913	T	C	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=1.122;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:142,57:0.29:199
chr1	145533175	rs11590105	T	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:173,73:0.30:246
chr1	145533314	rs2274619	T	C	8343.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr1	145535921	rs2274617	T	C	18704.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr1	145536082	rs2274616	G	A	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:113,208:0.65:321
chr1	145538139	rs2274615	C	T	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.13;ReadPosRankSum=0.388;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:63,81:0.56:144
chr1	145538664	rs1109216	A	G	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	145539461	rs56240846	G	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:26,76:0.75:102
chr1	145539892	rs35315146	T	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:64,142:0.69:206
chr1	145542281	rs2282014	G	A	3867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=-0.788;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:79,178:0.69:257
chr1	145555653	rs6424379	C	T	13835.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr1	145556986	rs56110740	C	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.865;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr1	145558565	rs11801520	C	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	145558824	rs17352281	A	C	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.622;QD=4.52;ReadPosRankSum=-0.894;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:252,95:0.27:347
chr1	145562087	rs41315701	G	A	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:73,162:0.69:235
chr1	145562293	rs11579366	G	C	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	145585317	rs4128488	A	G	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	145588536	rs9286836	C	T	10902.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:213,470:0.69:683
chr1	145597116	rs9728311	C	T	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	145597417	rs9728345	C	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr1	145598459	rs9729715	T	C	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	145601861	rs9286837	G	A	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	145696694	rs2231375	G	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:155,94:0.38:249
chr1	145706564	.	C	CAA	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.972;QD=9.85;ReadPosRankSum=1.265;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr1	146514576	rs34026136	T	C	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:372,188:0.34:560
chr1	146633933	rs1036852	G	A	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr1	146643555	rs1348316	A	G	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	146650058	rs1816802	T	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.400;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=8.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.660;SOR=1.486;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr1	146656292	rs4950385	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	146672906	rs894469	C	T	10773.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr1	146673178	rs6683215	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	146680262	rs2354433	A	G	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	146684131	rs2297753	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	146685121	rs1530336	G	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	146687250	rs1822312	A	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	146714255	rs1890040	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=0.135;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr1	146714392	rs1890042	G	C,T	1766.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=75;set=Intersection	GT:AF:DP	1/2:0.21,0.79:75
chr1	146714588	rs1890043	C	T	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr1	146723941	rs1890038	C	T	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.863;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:142,41:0.22:183
chr1	146724093	rs1890037	A	G	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	146727388	rs17160051	G	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	146727593	rs3737846	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.950;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:129,32:0.20:161
chr1	146728162	rs61409326	T	TA	4637.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	146736092	rs4950315	C	T	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:34,95:0.74:129
chr1	146739277	rs4143738	T	C	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.707;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=4.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.356;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:217,78:0.26:295
chr1	146740502	rs17356233	C	G	3533.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:91,156:0.63:247
chr1	146740576	rs11576360	G	A	9648.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr1	146747153	rs6680778	T	C	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	146747232	rs6672850	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr1	146748008	rs3831929	CAGCCA	C	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.493;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr1	146748072	rs7534963	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	146751782	rs7547279	A	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	146756222	rs146052781	AAAAC	A	1133.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr1	146759306	rs6703892	T	C	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=0.599;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:30,74:0.71:104
chr1	146759528	rs12755465	A	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr1	146763089	rs10900333	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,64:0.37:175
chr1	146763415	rs3737854	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.087;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	146766069	rs71083827	C	CAT	9086.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	146767149	rs4950394	G	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	146767320	rs6537	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.288;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	147086504	rs7512513	A	C	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:46,88:0.66:134
chr1	147087721	rs3737843	T	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:183,85:0.32:268
chr1	147091005	rs61729410	C	T	5895.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:118,260:0.69:378
chr1	147091416	rs80312516	G	A	5672.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:108,240:0.69:348
chr1	147091972	rs3820129	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:104,50:0.32:154
chr1	147096794	rs867270	A	G	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	147096828	rs946902	C	G	2440.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	147119273	rs1344	G	A	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.875;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:258,93:0.26:351
chr1	147121977	rs6593795	C	T	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	147124310	rs2153463	T	G	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	147127195	rs74879731	C	T	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr1	147131025	rs41295837	G	A	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:46,123:0.73:169
chr1	147131465	rs6674938	T	C	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	147131501	rs34675044	A	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.305;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:117,36:0.24:153
chr1	147131945	rs2275552	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	147142296	rs2883202	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	147230217	rs1692141	T	C	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	147380024	rs115981722	G	T	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr1	147381397	rs34123490	G	GA	1081.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.509;QD=6.52;ReadPosRankSum=0.002;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:83,83:0.50:166
chr1	147381444	rs1532399	A	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr1	147400513	.	C	T	536.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr1	147400824	.	A	C	327.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr1	147415585	rs142935665	T	C	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=45.06;MQRankSum=1.175;QD=5.30;ReadPosRankSum=-1.131;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:141,60:0.30:201
chr1	147806559	rs10752439	C	T	4472.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	147806874	rs2999607	G	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=2.439;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	147806880	rs537191	T	C	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.27;SOR=2.507;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	149376834	.	A	G	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.021;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=51.90;MQRankSum=-1.176;QD=3.33;ReadPosRankSum=-0.904;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:160,49:0.23:209
chr1	149379605	.	C	G	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-0.719;QD=6.81;ReadPosRankSum=-0.909;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr1	149379694	rs79328769	C	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-0.138;QD=10.42;ReadPosRankSum=2.393;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr1	149379780	rs79713217	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	149676264	rs199745503	T	C	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.11;MQRankSum=-12.352;QD=2.13;ReadPosRankSum=-1.842;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:322,80:0.20:402
chr1	149676401	rs146138154	A	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:297,123:0.29:420
chr1	149676508	rs142083788	A	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.57;MQRankSum=-0.607;QD=4.32;ReadPosRankSum=-0.772;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:101,34:0.25:135
chr1	149676532	rs138339323	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.32;MQRankSum=0.469;QD=3.85;ReadPosRankSum=-0.585;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr1	149900985	rs71664710	CA	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.133;QD=1.82;ReadPosRankSum=-1.595;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:121,55:0.31:176
chr1	149905279	rs72692821	G	A	549.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-2.547;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:145,40:0.22:185
chr1	149908108	rs1868992	A	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:100,68:0.40:168
chr1	149931541	rs4926400	G	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.837;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:93,28:0.23:121
chr1	150053389	rs115802109	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:96,37:0.28:133
chr1	150122493	rs4553237	T	C	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	150128425	rs1545762	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	150129267	rs10749675	G	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	150199039	rs68136184	CTCCTCT	C	8573.73	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:109,217:0.67:326
chr1	150199123	rs7522034	G	T	4353.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:95,197:0.67:292
chr1	150203082	rs201009025	C	CT	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.305;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.462;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr1	150203984	rs113913866	AT	A	1114.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr1	150236107	rs41304255	G	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,78:0.67:116
chr1	150248767	rs116349314	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr1	150249101	rs11205354	C	A	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr1	150255587	rs2147324	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr1	150258838	rs1122967	C	G	4451.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:106,195:0.65:301
chr1	150259400	rs9126	A	C	4189.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:91,181:0.67:272
chr1	150276429	rs471738	G	A	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:33,77:0.70:110
chr1	150276461	rs471657	G	A	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr1	150277387	rs11205359	T	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr1	150280801	rs8006	G	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	150281202	rs580060	A	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr1	150300727	rs834225	T	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.858;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:63,23:0.27:86
chr1	150307270	rs1260408	T	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	150321486	rs1625468	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.109;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr1	150389964	.	GA	G	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.181;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.000;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:39,21:0.35:60
chr1	150432802	rs12029359	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:99,52:0.34:151
chr1	150432870	.	GGTT	G	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.329;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.031;QD=11.02;ReadPosRankSum=-1.273;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr1	150445819	rs7002	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	150470322	rs11590324	C	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.892;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.030;QD=5.28;ReadPosRankSum=1.560;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr1	150471848	rs34802685	A	AT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=2.050;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr1	150477061	rs3738487	C	T	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-2.221;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:282,119:0.30:401
chr1	150482738	rs11205387	G	A	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:326,153:0.32:479
chr1	150483236	rs9661040	A	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:43,10:0.19:53
chr1	150483355	rs3737240	C	T	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:243,100:0.29:343
chr1	150483840	rs4970979	C	T	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr1	150484395	rs149815479	ACC	A	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,13:0.24:55
chr1	150484987	rs13294	G	A	3757.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:454,218:0.32:672
chr1	150485566	rs12031973	T	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.998;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-0.043;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr1	150485571	rs12031974	T	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	150522471	rs10668635	C	CTG	2096.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:106,59:0.36:165
chr1	150525240	.	G	A	777.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr1	150526044	rs41317515	G	C	4489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.128;ClippingRankSum=0.000;DB;DP=937;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=1.534;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:664,273:0.29:937
chr1	150528090	rs146160043	G	GACAC	5871.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:67,144:0.68:211
chr1	150528118	rs149100901	T	TACAC	4223.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:48,107:0.69:155
chr1	150528175	rs35233292	GCA	G	1780.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr1	150528758	rs149722020	C	T	5340.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:117,246:0.68:363
chr1	150529322	rs34379037	T	TAA	3862.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	150530548	rs56228576	C	G	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=2.842;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:331,119:0.26:450
chr1	150531008	rs10888382	T	C	10078.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	150531050	rs10749657	G	A	12084.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	150531170	rs10749658	C	T	15322.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr1	150550019	rs11428742	T	TA	5658.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	150552042	rs16837903	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:198,82:0.29:280
chr1	150595354	.	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=0.159;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr1	150666797	rs7412396	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	150671243	rs139837908	AC	A	2443.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	150676674	rs367543855	TA	T	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.941;QD=3.58;ReadPosRankSum=0.260;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr1	150678910	rs1336899	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	150679033	rs1336900	G	A	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	150679358	rs11586422	C	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	150680988	rs3768005	A	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	150691769	rs201335673	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	150705755	rs1415148	G	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	150727539	rs2230061	G	A	9166.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr1	150730184	rs11204722	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	150730279	rs2275235	A	G	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	150771703	rs10788796	T	C	12651.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr1	150779755	rs6587522	C	T	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	150789961	rs3894771	A	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	150790289	rs35672926	C	CA	894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.970;QD=9.04;ReadPosRankSum=1.400;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:28,71:0.72:99
chr1	150801466	rs3738483	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	150802272	rs3215133	AT	A	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-1.361;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr1	150804401	rs200891935	G	GA	978.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.615;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.332;QD=8.90;ReadPosRankSum=-0.768;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:40,70:0.64:110
chr1	150804429	rs10305704	A	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,94:0.99:95
chr1	150808889	rs2228099	C	G	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	150811794	rs2256355	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	150825511	rs10305673	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	150849071	rs34415707	AC	A	1276.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.506;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.495;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=-0.322;SOR=0.148;set=HC	GT:AD:AF:DP	1/1:5,56:0.92:61
chr1	150914922	rs11430191	C	CA	826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=0.432;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:22,62:0.74:84
chr1	150923774	rs2124952	T	A	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr1	150932953	rs374284707	GA	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.337;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr1	150935872	rs2280627	A	G	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	150938571	rs8444	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	150938616	rs267739	G	A	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	150939744	rs11204750	C	A	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	150940357	rs6656535	GC	TT	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	150941381	rs752376	C	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	150944541	rs267737	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	150958977	rs2305814	T	C	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	150960350	rs7532008	A	C	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:43,110:0.72:153
chr1	150969992	rs2925740	T	C	11975.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr1	150970577	rs2925741	G	T	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	150970836	rs1673160	T	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.854;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.627;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr1	150972538	rs708909	G	A	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	150974162	rs771204	G	A	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	150974311	rs59942146	G	A	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:56,129:0.70:185
chr1	150975108	rs771205	T	C	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	150981267	rs2305813	G	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=1.335;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:94,48:0.34:142
chr1	150990466	rs71090118	C	CAT	3484.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:35,89:0.72:124
chr1	150990825	rs3738480	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	150991285	rs6664220	A	G	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr1	150996971	.	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=1.517;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:104,21:0.17:125
chr1	150997940	rs3738478	T	C	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr1	150998221	rs55774303	AT	A	715.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=1.932;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:29,52:0.64:81
chr1	150999863	rs55717234	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.413;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:70,19:0.21:89
chr1	151001583	rs6691701	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	151006539	rs3738476	C	A	9602.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr1	151019180	rs6587553	A	G	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	151026815	rs2902810	C	T	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr1	151028234	rs11204767	G	T	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr1	151039609	rs3738481	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	151070252	rs35034487	CA	C	1245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.904;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.950;QD=9.51;ReadPosRankSum=-0.574;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:37,94:0.72:131
chr1	151104598	rs4971005	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	151104950	rs10788800	G	A	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	151105824	rs4971006	C	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	151108137	rs4971007	T	G	14904.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr1	151114882	rs11464219	C	CT	4889.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	151144314	rs200165349	C	CT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.360;QD=1.65;ReadPosRankSum=0.992;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr1	151144891	rs28730724	C	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.417;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.831;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:95,22:0.19:117
chr1	151146186	rs7552226	C	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	151146276	rs7521416	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	151149601	rs6656261	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	151157066	.	C	CT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.959;QD=6.09;ReadPosRankSum=0.290;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr1	151212399	rs141190258	C	CCTT	6316.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	151227371	rs3811405	A	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr1	151254023	rs59912932	A	C	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:64,136:0.68:200
chr1	151254041	rs3811406	T	C	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.305;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=1.144;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:86,174:0.67:260
chr1	151259043	rs2298265	C	T	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:97,192:0.66:289
chr1	151259543	rs3748545	G	A	13246.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:291,576:0.66:867
chr1	151260673	rs12745008	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,124:0.63:197
chr1	151280400	rs1536617	C	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr1	151282841	rs1752388	A	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr1	151288391	rs1752379	A	G	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr1	151314379	rs1752387	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	151316161	rs1752386	G	A	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	151341728	rs35093538	G	GC	737.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr1	151372138	rs7172	G	A	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.380;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:171,83:0.33:254
chr1	151372770	rs2495390	A	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	151373200	rs2495391	T	C	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	151374025	rs4603	T	C	7021.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:137,310:0.69:447
chr1	151377248	rs6667714	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	151379250	rs2274535	G	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.036;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr1	151379687	rs373979372	T	C	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr1	151380504	rs200057999	AAAAG	A	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=1.482;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr1	151380727	rs2025899	A	G	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr1	151381320	rs3831142	GA	G	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=1.383;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:116,35:0.23:151
chr1	151383971	rs71625121	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr1	151384052	.	T	TA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.852;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.918;QD=0.79;ReadPosRankSum=0.339;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:103,25:0.20:128
chr1	151384711	rs1887545	A	G	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-1.826;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:143,41:0.22:184
chr1	151384733	rs3748550	G	A	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=0.753;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:192,53:0.22:245
chr1	151395782	rs2274533	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr1	151396037	rs2274534	A	C	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=0.776;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:153,40:0.21:193
chr1	151402045	rs6587577	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.392;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:159,63:0.28:222
chr1	151413613	rs115951766	A	G	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	151499635	rs2298168	C	T	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	151501698	rs2096232	A	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	151501737	rs6678068	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	151508061	rs11204842	A	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	151512802	rs16833376	G	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr1	151512895	rs3828054	A	G	4921.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:112,233:0.68:345
chr1	151518484	rs71580387	T	TTC	1324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=1.922;QD=26.49;ReadPosRankSum=0.032;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr1	151535020	rs143684177	A	ATC	471.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr1	151538507	rs11405272	T	TC	57.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	151538784	rs201554325	TTC	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.129;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:52,7:0.12:59
chr1	151542099	rs3748610	G	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:44,109:0.71:153
chr1	151546931	rs6660238	A	G	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	151547253	rs16833391	C	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	151551320	rs3748608	G	A	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-0.641;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:17,44:0.72:61
chr1	151552301	rs3833527	TG	T	692.87	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,20:0.91:22
chr1	151553918	rs10494267	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	151554503	rs1891592	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:52,94:0.64:146
chr1	151633127	rs35898674	C	CCA	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	151634512	rs3831367	A	AT	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,29:0.33:88
chr1	151675486	rs3790508	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	151675618	rs1308150	T	C	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	151679441	rs1308152	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr1	151679900	rs10888428	C	T	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:119,169:0.59:288
chr1	151679963	rs2280473	C	T	6221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=2.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=1.923;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:167,289:0.63:456
chr1	151681567	rs2280474	G	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:150,76:0.34:226
chr1	151681635	rs2280475	T	C	4159.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:120,181:0.60:301
chr1	151686983	rs939592	T	A	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr1	151694241	rs1879533	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	151701466	rs80113901	A	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	151732700	rs10888433	A	G	10212.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	151733335	rs8480	T	G	11609.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.74;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	151733379	rs57922119	C	CAA	1068.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.321;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:14,64:0.82:78
chr1	151735576	rs7007	T	C	11681.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:4,448:0.99:452
chr1	151740479	rs1196457	C	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	151740666	rs2495397	T	C	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	151747799	rs1781419	G	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	151748425	rs3923394	C	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	151753805	rs11355113	AT	A	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=22.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=1.957;SOR=0.029;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr1	151755284	rs6681093	C	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	151783688	rs939595	A	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr1	151789588	rs151171878	C	CTGTGTGTG	1490.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	151789609	rs56273334	C	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=42.53;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	151789609	.	CGC	TGT	762	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=1;MGOF=24;MMLQ=23;MQ=59.5;NF=29;NR=9;PP=762;QD=21.4596809174;SC=TGTGTGTGTGCGCGCGCGCGC;SbPval=0.77;Source=Platypus;TC=51;TCF=36;TCR=15;TR=38;WE=151789619;WS=151789597;set=Platypus	GT:AD:AF:DP	1/1:13,38:0.75:51
chr1	151789611	rs55841824	C	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=42.53;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	151789647	rs12144914	T	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr1	151803449	rs80223568	G	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=7.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.381;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:134,56:0.29:190
chr1	151811226	rs6673556	G	A	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	3051.73	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=44.88;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	151820298	rs6587624	G	C	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr1	151820324	rs6587625	T	C	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	151825991	rs7556386	G	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr1	151862661	rs1060870	G	A	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr1	151867560	rs3762427	G	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	151881885	rs3748805	A	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	152009530	rs3811422	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	152085505	rs2515663	A	C	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	152185500	rs12726613	C	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:60,22:0.27:82
chr1	152185750	rs12729662	G	A	4902.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:275,239:0.46:514
chr1	152185762	rs41266112	C	G	8576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.814;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-4.294;QD=18.85;ReadPosRankSum=-3.548;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:226,229:0.50:455
chr1	152185768	rs41266114	T	G	8254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.738;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-4.511;QD=19.11;ReadPosRankSum=-4.483;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:225,207:0.48:432
chr1	152185774	rs61814932	A	G	7437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.029;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=4.056;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-4.696;QD=18.19;ReadPosRankSum=-5.667;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:221,188:0.46:409
chr1	152185780	rs41266116	G	A	6453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.398;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-4.976;QD=17.21;ReadPosRankSum=-6.702;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:213,162:0.43:375
chr1	152185790	rs76102381	T	C	4285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.867;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-5.072;QD=14.33;ReadPosRankSum=-6.993;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:194,105:0.35:299
chr1	152185792	rs74493243	G	A	3796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-5.119;QD=13.51;ReadPosRankSum=-8.077;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:183,98:0.35:281
chr1	152185796	rs41266118	A	G	3331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.452;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.902;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-5.276;QD=12.67;ReadPosRankSum=-9.279;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:174,89:0.34:263
chr1	152185812	.	C	CAG	1274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.662;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-5.828;QD=6.28;ReadPosRankSum=-8.555;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:162,41:0.20:203
chr1	152185817	.	CCA	C	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.385;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=19.373;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-3.828;QD=1.80;ReadPosRankSum=-5.952;SOR=3.262;set=HC	GT:AD:AF:DP	0/1:159,16:0.09:175
chr1	152191709	rs6662450	C	G	10253.77	.	AC=1;AF=0.500;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	0/1:239,453:0.65:692
chr1	152191879	rs10788828	G	A	8887.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:166,383:0.70:549
chr1	152192114	rs7520249	C	T	7351.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:154,316:0.67:470
chr1	152192293	rs7520375	C	T	4133.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:83,167:0.67:250
chr1	152192555	rs41266134	T	C	3574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.630;QD=4.65;ReadPosRankSum=-0.222;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:551,217:0.28:768
chr1	152192631	rs6587647	C	T	14637.77	.	AC=1;AF=0.500;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	0/1:295,636:0.68:931
chr1	152192687	rs6587648	T	C	24332.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr1	152192978	rs6587649	T	C	23968.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,898:1.00:898
chr1	152193052	rs6587650	A	G	22507.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:0,854:1.00:854
chr1	152193121	rs6587651	G	T	8460.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:187,359:0.66:546
chr1	152193291	rs6587652	G	T	13685.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:265,581:0.69:846
chr1	152193544	rs7535536	A	G	8427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.712;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:182,359:0.66:541
chr1	152193547	rs6587653	G	A	20655.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr1	152193851	rs11204937	C	T	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:148,220:0.60:368
chr1	152193990	rs11204938	A	G	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:22,58:0.72:80
chr1	152195579	rs74127901	G	A	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:203,92:0.31:295
chr1	152195728	rs34061715	AT	A	4089.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:5,211:0.98:216
chr1	152276149	rs77422831	C	T	3067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-1.334;QD=4.82;ReadPosRankSum=1.053;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:444,192:0.30:636
chr1	152276671	rs7518080	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=8.036;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-6.541;QD=2.10;ReadPosRankSum=-4.336;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:239,39:0.14:278
chr1	152276772	rs72697000	C	A	3488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.395;QD=3.96;ReadPosRankSum=3.430;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:645,237:0.27:882
chr1	152276871	rs3126066	A	G	6567.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:464,212:0.31:676
chr1	152276889	rs3126067	A	G	5869.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:370,168:0.31:538
chr1	152277168	rs3091276	A	G	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:408,166:0.29:574
chr1	152277345	rs2065956	C	T	5093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=1104;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.079;QD=4.61;ReadPosRankSum=0.920;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:790,314:0.28:1104
chr1	152277396	rs6681433	T	C	3831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DB;DP=788;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.289;QD=4.87;ReadPosRankSum=-1.255;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:562,225:0.29:787
chr1	152277717	rs9436066	C	A	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=13.296;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=-4.971;QD=2.16;ReadPosRankSum=3.021;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:376,92:0.20:468
chr1	152278689	rs57672167	C	A	11674.77	.	AC=1;AF=0.500;AN=2;DB;DP=1356;set=Intersection	GT:AD:AF:DP	0/1:810,544:0.40:1354
chr1	152278788	.	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676;ClippingRankSum=0.000;DP=2335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-14.521;QD=0.25;ReadPosRankSum=-1.504;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:2166,167:0.07:2333
chr1	152278856	rs11582087	T	G	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.001;ClippingRankSum=0.000;DB;DP=1087;ExcessHet=3.0103;FS=0.735;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=2.025;QD=1.24;ReadPosRankSum=0.436;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:912,174:0.16:1086
chr1	152279642	rs149024902	G	C	3438.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:340,183:0.35:523
chr1	152279729	rs3126072	C	T	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	0/1:619,334:0.35:953
chr1	152279841	rs3126074	G	C	2875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.409;QD=6.52;ReadPosRankSum=0.470;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:294,147:0.33:441
chr1	152280736	rs78974621	T	C	3415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=1248;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-15.284;QD=2.75;ReadPosRankSum=0.230;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:1078,166:0.13:1244
chr1	152280759	rs2338554	A	G	3983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=1119;ExcessHet=3.0103;FS=1.593;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-14.742;QD=3.57;ReadPosRankSum=4.423;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:946,171:0.15:1117
chr1	152280782	rs2184953	A	G	11630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=956;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-6.897;QD=12.23;ReadPosRankSum=2.041;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:526,425:0.45:951
chr1	152280788	rs66954353	T	G	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=898;ExcessHet=3.0103;FS=2.341;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-13.436;QD=2.09;ReadPosRankSum=2.618;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:724,170:0.19:894
chr1	152280864	rs2184954	A	G	4560.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:232,201:0.46:433
chr1	152280900	rs74129452	T	G	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.248;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-12.983;QD=3.27;ReadPosRankSum=0.120;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:355,107:0.23:462
chr1	152281007	rs7512553	AA	GG	5177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-4.689;QD=6.64;ReadPosRankSum=0.839;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:612,168:0.22:780
chr1	152281039	rs7522925	G	A	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.656;QD=2.84;ReadPosRankSum=0.868;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:607,172:0.22:779
chr1	152281228	rs7546186	C	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-9.237;QD=0.30;ReadPosRankSum=-0.574;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:836,116:0.12:952
chr1	152281523	rs80059102	A	C	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=10.634;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-10.126;QD=4.97;ReadPosRankSum=2.573;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:320,72:0.18:392
chr1	152281534	rs113544881	A	T	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.676;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=10.976;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-10.449;QD=4.39;ReadPosRankSum=1.600;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:333,67:0.17:400
chr1	152281690	rs12407748	C	T	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	0/1:734,318:0.30:1052
chr1	152281948	rs12405241	G	A	1905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.173;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.139;QD=4.13;ReadPosRankSum=-0.759;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:336,125:0.27:461
chr1	152282267	rs12405278	G	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:259,111:0.30:370
chr1	152282311	rs12407807	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:165,66:0.29:231
chr1	152282917	rs11204978	G	T	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.803;QD=3.49;ReadPosRankSum=-0.579;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:438,140:0.24:578
chr1	152283236	rs11581433	T	C	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-9.022;QD=4.24;ReadPosRankSum=1.308;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:274,101:0.27:375
chr1	152283283	rs11586631	C	T	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:211,90:0.30:301
chr1	152283568	rs11581512	T	C	5211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=1039;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.954;QD=5.04;ReadPosRankSum=0.093;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:712,323:0.31:1035
chr1	152283975	rs66831674	A	G	3043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.512;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-3.101;QD=4.49;ReadPosRankSum=0.754;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:487,191:0.28:678
chr1	152284854	rs3120653	A	G	1773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.417;QD=4.08;ReadPosRankSum=-0.020;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:318,117:0.27:435
chr1	152285099	rs74129461	C	T	3264.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:449,193:0.30:642
chr1	152285930	rs11584340	G	A	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:380,169:0.31:549
chr1	152286002	rs2011331	T	C	3445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-1.222;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:436,205:0.32:641
chr1	152286032	rs11588170	C	T	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:504,220:0.30:724
chr1	152286367	rs41267154	C	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:150,77:0.34:227
chr1	152287341	rs34224823	CT	C	161.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr1	152323132	rs12568784	G	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:209,96:0.31:305
chr1	152325732	rs12022217	G	A	5118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=1160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.225;QD=4.43;ReadPosRankSum=-1.432;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:838,317:0.27:1155
chr1	152328411	rs6679449	A	G	4108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.908;ClippingRankSum=0.000;DB;DP=1551;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=51.95;MQRankSum=-9.498;QD=2.65;ReadPosRankSum=-1.319;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:1260,289:0.19:1549
chr1	152329435	rs2282303	C	T	4887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.071;ClippingRankSum=0.000;DB;DP=982;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.047;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:698,281:0.29:979
chr1	152331240	rs3818831	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:233,98:0.30:331
chr1	152382062	rs10888486	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.486;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr1	152382120	rs3829868	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-1.170;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:284,71:0.20:355
chr1	152384498	rs3215709	G	GT	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	152384759	rs7521839	A	G	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.087;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:127,66:0.34:193
chr1	152384833	rs1923492	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	152484129	rs2105117	G	A	36081.77	.	AC=2;AF=1.00;AN=2;DB;DP=1364;set=Intersection	GT:AD:AF:DP	1/1:0,1357:1.00:1357
chr1	152487979	rs2282296	C	T	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	152488063	rs1053588	C	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	152552285	rs512208	C	A	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:261,139:0.35:400
chr1	152636843	rs9793541	A	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:167,69:0.29:236
chr1	152681543	rs1332496	T	C	27212.77	.	AC=2;AF=1.00;AN=2;DB;DP=1023;set=Intersection	GT:AD:AF:DP	1/1:0,1021:1.00:1021
chr1	152681680	rs6143428	C	CAGCTCTGGGGGCTGCTGT	4887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=799;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.476;QD=8.09;ReadPosRankSum=-0.084;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:455,149:0.25:604
chr1	152691943	rs1332499	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr1	152692074	rs1332500	G	C	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.862;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:385,136:0.26:521
chr1	152692472	rs873775	A	C	4754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.571;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:570,263:0.32:833
chr1	152692588	rs944682	A	G	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:439,202:0.32:641
chr1	152692781	rs3814350	G	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:110,50:0.31:160
chr1	152692862	rs3814351	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	152732436	rs4845480	G	C	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=7.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.337;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:237,90:0.28:327
chr1	152733301	rs4329520	T	A	7621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=1473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.513;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:1026,443:0.30:1469
chr1	152759950	rs11205106	A	G	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:332,169:0.34:501
chr1	152777868	rs36107483	A	G	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-10.315;QD=4.35;ReadPosRankSum=-1.861;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:449,175:0.28:624
chr1	152777964	rs17624493	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:280,129:0.32:409
chr1	152882982	.	C	CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	1268.73	.	AC=2;AF=1.00;AN=2;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.93;QD=79.30;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	152944594	rs3170863	C	T	3349.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:404,193:0.32:597
chr1	152957573	rs1611760	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr1	152957832	rs1611762	C	A	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:362,174:0.32:536
chr1	152957887	rs1611764	G	A	2907.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:350,157:0.31:507
chr1	152975495	rs2075739	G	A	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.561;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:277,99:0.26:376
chr1	152975763	rs1977734	C	A	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.781;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:148,60:0.29:208
chr1	152975829	rs1970328	A	G	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=4.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.399;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:235,88:0.27:323
chr1	152975941	rs1055935	C	G	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.072;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:274,93:0.25:367
chr1	153004721	rs1334848	A	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.130;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.333;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr1	153004778	rs3820141	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:251,107:0.30:358
chr1	153004809	rs3181787	T	C	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.929;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:374,151:0.29:525
chr1	153004848	rs3795381	T	C	7092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.095;QD=10.51;ReadPosRankSum=0.282;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:468,207:0.31:675
chr1	153004853	rs3795382	C	T	7181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.101;QD=10.45;ReadPosRankSum=0.157;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:478,209:0.30:687
chr1	153004983	rs12195	C	T	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:371,175:0.32:546
chr1	153005156	rs2711	C	T	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:468,201:0.30:669
chr1	153122310	rs510277	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	153190590	rs35221508	G	GT	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr1	153233488	rs150026164	C	CGGCGGT	5163.73	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:111,247:0.69:358
chr1	153233510	rs6661601	A	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:235,96:0.29:331
chr1	153233701	rs1143390	A	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,77:0.65:119
chr1	153233991	rs11275959	A	ACTCTGGCGGCGG	4383.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr1	153234295	rs12043009	G	A	4843.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:91,212:0.70:303
chr1	153271713	rs190690639	G	A	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:96,149:0.61:245
chr1	153277423	rs843971	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=-1.363;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:135,45:0.25:180
chr1	153277660	rs2771112	A	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.371;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:90,23:0.20:113
chr1	153279462	rs66966700	TAAG	T	8128.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	153282892	rs821424	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr1	153283004	rs821423	C	T	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	153283179	rs3006473	A	G	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr1	153314153	rs3006448	C	A	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	153314347	rs3006449	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	153315467	rs5777858	T	TAAG	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	153315579	rs3014863	A	G	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	153315784	rs1865234	T	C	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	153320334	rs3006457	T	C	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	153320372	rs3006458	T	G	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr1	153320581	rs3006459	T	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	153346263	rs4772	A	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=11.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.040;SOR=2.063;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr1	153362507	rs3006488	A	G	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.269;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr1	153363105	rs3795391	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:89,34:0.28:123
chr1	153390626	rs55985140	G	A	3644.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:62,161:0.72:223
chr1	153391729	rs3006414	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:218,91:0.29:309
chr1	153391786	rs3014813	T	C	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:264,110:0.29:374
chr1	153412392	rs3006428	T	G	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr1	153431406	rs3014837	C	G	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	153509890	rs3795393	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=4.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-1.739;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:183,53:0.22:236
chr1	153588340	rs11548103	C	T	8806.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr1	153598695	.	C	T	589.77	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr1	153604029	rs1046379	C	T	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.927;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:252,86:0.25:338
chr1	153617749	rs41313936	C	T	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:174,79:0.31:253
chr1	153636432	rs10598064	TTAC	T	1143.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr1	153642372	rs79913857	G	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:103,32:0.24:135
chr1	153642835	rs6663046	G	C	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	153658480	rs11264236	G	A	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr1	153662617	rs149726910	T	TCA	70.94	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=11.82;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	153701376	rs12074957	G	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.26;QD=25.12;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	153719645	rs41302547	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.652;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:94,33:0.26:127
chr1	153742534	.	GGTGTGT	G	232	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=4;MGOF=25;MMLQ=23;MQ=61.01;NF=7;NR=9;PP=232;QD=14.6875;SC=AGTGGATTGGGGTGTGTGTGT;SbPval=0.6;Source=Platypus;TC=18;TCF=8;TCR=10;TR=16;WE=153742549;WS=153742524;set=Platypus	GT:AD:AF:DP	0/1:2,16:0.89:18
chr1	153742535	rs144771560	GTGT	G	412.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=62.45;MQRankSum=-0.000;QD=19.65;ReadPosRankSum=0.586;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	153742610	rs12120312	G	T	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-1.221;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr1	153743234	rs6675978	T	C	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:49,84:0.63:133
chr1	153743289	rs12068256	C	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr1	153743317	rs4345834	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr1	153750207	rs139720425	C	CCTT	10091.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:122,244:0.67:366
chr1	153750214	rs374974027	TC	T	10432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.433;QD=26.02;ReadPosRankSum=1.506;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:135,266:0.66:401
chr1	153784666	rs11264420	CT	C,CTT	551.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.051;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.877;QD=6.27;ReadPosRankSum=0.591;SOR=0.324;set=HC	GT:AD:AF:DP	1/2:16,50,22:0.57,0.25:88
chr1	153790501	rs4363451	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.020;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr1	153790790	rs35175263	CT	C	61.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=7.74;ReadPosRankSum=0.157;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr1	153800931	rs144104082	TACACACAC	T	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.12;ReadPosRankSum=-3.588;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr1	153904574	rs11264620	T	C	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.198;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:81,41:0.34:122
chr1	153906397	rs11264621	A	G	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-1.743;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:183,89:0.33:272
chr1	153907278	rs3835302	CCTGCTGCTG	C	3812.73	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:298,122:0.29:420
chr1	153909069	rs1043608	G	C	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.331;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:159,58:0.27:217
chr1	153912623	rs113191295	G	A	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:356,168:0.32:524
chr1	153913699	rs1110165	T	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:143,55:0.28:198
chr1	153913770	rs2252508	A	G	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.825;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:244,94:0.28:338
chr1	153917369	rs6680140	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	153920564	rs10559	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:102,43:0.30:145
chr1	153921483	rs111395902	AC	A	1585.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:122,66:0.35:188
chr1	153926078	rs11264680	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr1	153941514	rs11264743	C	T	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=5.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=0.656;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:184,64:0.26:248
chr1	153954674	rs10908578	T	C	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.496;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr1	153954778	rs371625659	AAC	A	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	153964396	rs34521811	C	CAA	2282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-0.920;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:183,70:0.28:253
chr1	153967487	.	C	CA	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.93;ReadPosRankSum=1.173;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:71,29:0.29:100
chr1	153974621	rs6701341	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	153994647	rs11264875	C	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-2.494;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:87,39:0.31:126
chr1	154027381	rs3834774	AT	A	534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.933;QD=4.53;ReadPosRankSum=-0.029;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:70,48:0.41:118
chr1	154029450	rs11264964	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr1	154061855	rs2066135	T	G	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	154076366	rs7521047	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	154091017	rs6661101	G	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr1	154108387	rs3001361	G	A	7593.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	154110733	rs11318139	GA	G	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=4.391;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.321;QD=3.72;ReadPosRankSum=-0.395;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr1	154112167	rs2500223	A	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.881;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,40:0.62:64
chr1	154141908	rs4845364	A	G	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.747;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:178,58:0.25:236
chr1	154178079	rs74957241	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.700;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:153,72:0.32:225
chr1	154186359	rs200334403	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:153,67:0.30:220
chr1	154186918	rs12408458	G	C	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:142,92:0.39:234
chr1	154192143	rs9803862	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr1	154192463	rs34176728	G	GT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.964;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.120;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr1	154208877	rs3762339	A	G	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:40,8:0.17:48
chr1	154218639	rs4040743	TTCAG	T	654.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr1	154227239	rs1194604	C	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,26:0.28:94
chr1	154227292	rs11412846	G	GT	774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.468;QD=2.96;ReadPosRankSum=-0.283;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:178,84:0.32:262
chr1	154228287	rs1194603	T	C	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.230;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:195,73:0.27:268
chr1	154243097	rs2282227	G	A	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:50,82:0.62:132
chr1	154243115	rs1044013	C	T	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr1	154245142	rs11265425	T	G	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr1	154245771	rs186146689	T	C	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:188,89:0.32:277
chr1	154285078	rs11581043	T	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.720;QD=3.10;ReadPosRankSum=0.069;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:73,24:0.25:97
chr1	154293675	rs6668968	G	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.950;QD=3.06;ReadPosRankSum=0.664;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:149,44:0.23:193
chr1	154294656	rs1194607	T	C	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr1	154295592	rs6685323	C	T	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:173,72:0.29:245
chr1	154296925	rs141365858	C	A	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:249,132:0.35:381
chr1	154303705	rs12727865	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	154303976	rs6702754	T	C	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=0.019;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:66,21:0.24:87
chr1	154305010	rs1209264	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	154305190	rs12077870	G	C	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.841;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:115,63:0.35:178
chr1	154310048	rs1760795	C	G	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:85,170:0.67:255
chr1	154313232	rs1194588	T	C	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	154313689	rs34968830	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr1	154316434	rs2274988	C	T	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.832;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:143,39:0.21:182
chr1	154317153	rs1194587	C	T	4070.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:94,184:0.66:278
chr1	154317418	rs1194586	T	C	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,47:0.62:76
chr1	154320942	rs2297607	A	G	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.235;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:242,70:0.22:312
chr1	154321072	rs1194591	A	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	154321084	rs2297606	G	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=4.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.759;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:65,31:0.32:96
chr1	154401679	rs2228144	G	A	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.612;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.021;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:212,79:0.27:291
chr1	154401972	rs6694817	T	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:144,76:0.35:220
chr1	154408340	rs4845371	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr1	154408748	.	C	A	1866.77	.	AC=1;AF=0.500;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	0/1:20,75:0.79:95
chr1	154422580	.	CTGTGTG	C,CTGTGTGTGTG	887.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=46;set=Intersection	GT:AF:DP	0/1:0.77:26
chr1	154426947	rs4845374	T	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.379;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:87,30:0.26:117
chr1	154437896	rs2229238	T	C	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	154442960	rs11265621	G	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:30,92:0.75:122
chr1	154459197	rs4845633	C	G	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	154474131	rs4845635	C	G	5345.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:129,244:0.65:373
chr1	154474557	rs6703672	T	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	154479657	rs10654618	C	CAT	3656.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	154479670	rs6664608	C	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:37,60:0.62:97
chr1	154492702	rs10908842	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr1	154493721	rs6684225	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	154514331	rs4845647	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	154514338	rs4845648	A	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	154516571	rs6678164	T	C	14097.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	154523215	rs4520411	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	154523562	rs9427082	G	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr1	154523588	rs10908849	T	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	154528086	rs4078519	T	C	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	154557685	rs9427094	C	T	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	154561261	rs9427095	G	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	154562624	rs201932953	CG	C	189.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=7.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=1.680;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	154562625	rs7532276	G	C	268.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr1	154571174	rs143817514	T	TGGA	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	154573967	rs2229857	T	C	14674.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr1	154574820	rs1466731	T	C	12521.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr1	154575040	rs1802645	C	T	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	154600372	rs6426859	A	G	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	154709525	.	A	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.198;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.989;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:82,19:0.19:101
chr1	154744807	rs1051614	C	G	6185.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:122,256:0.68:378
chr1	154744852	rs1131820	A	G	3606.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:73,156:0.68:229
chr1	154744937	rs11589471	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr1	154832304	rs4845397	T	C	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	154832322	rs1218586	A	C	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	154841415	rs57846577	TCTCTCTCTCTCACA	T	4437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.952;MLEAC=1;MLEAF=0.500;MQ=63.65;MQRankSum=6.822;QD=26.10;ReadPosRankSum=4.643;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:58,112:0.66:170
chr1	154842199	.	G	GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT	9226.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=377;set=Intersection	GT:AF:DP	1/2:0.46,0.52:187
chr1	154917701	rs906594	A	G	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	154918352	rs41264253	G	A	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:340,170:0.33:510
chr1	154919080	rs2061690	C	T	9375.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:195,415:0.68:610
chr1	154931238	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=0.004;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:113,15:0.12:128
chr1	154948327	rs12087657	G	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:111,49:0.31:160
chr1	154983539	rs6686021	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr1	154987526	rs11264295	C	T	8220.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:213,369:0.63:582
chr1	154988957	rs2242195	A	G	12586.77	.	AC=1;AF=0.500;AN=2;DB;DP=884;set=Intersection	GT:AD:AF:DP	0/1:310,573:0.65:883
chr1	155001929	rs10908452	T	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr1	155006091	rs10908453	A	G	11470.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:209,509:0.71:718
chr1	155006999	rs6680600	C	T	5548.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:131,247:0.65:378
chr1	155007293	rs4845404	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.11;ReadPosRankSum=0.329;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:7,37:0.84:44
chr1	155007302	rs4845405	C	A	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.82;ReadPosRankSum=1.044;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr1	155019710	rs11264300	A	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:52,71:0.58:123
chr1	155025361	rs2306125	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	155026114	rs6660884	C	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=2.156;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr1	155026942	rs6427128	A	C	11835.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr1	155028522	rs11264302	G	A	6723.77	.	AC=1;AF=0.500;AN=2;DB;DP=1047;set=Intersection	GT:AD:AF:DP	0/1:667,374:0.36:1041
chr1	155030557	rs11264303	A	C	4385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.155;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:719,287:0.29:1006
chr1	155031376	rs12023499	C	T	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:20,72:0.78:92
chr1	155033317	rs11264304	T	C	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	155033918	rs41264285	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:237,123:0.34:360
chr1	155057499	rs3766918	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr1	155105882	rs4971066	T	G	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr1	155106550	rs9297	A	G	13779.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	155108287	rs11264333	G	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	155142210	rs4421576	A	G	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	155142229	rs4276914	G	A	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	155148520	rs80254867	G	A	4716.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:105,203:0.66:308
chr1	155148781	rs4971059	G	A	3839.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	155149718	rs3814316	G	A	28245.77	.	AC=2;AF=1.00;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	1/1:1,1047:1.00:1048
chr1	155162067	rs4072037	C	T	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	155173180	rs142293248	G	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr1	155178782	rs760077	A	T	6313.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	155181843	rs2974935	G	T	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	155182164	rs2075570	C	T	11278.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr1	155184975	rs140081212	A	G	14068.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr1	155186729	rs28445596	T	C	5989.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr1	155186742	rs1057941	G	A	5056.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	155194531	.	C	CA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=1.255;QD=2.37;ReadPosRankSum=0.891;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr1	155205669	rs28559737	G	T	11774.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	155209962	rs114217696	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr1	155257970	.	G	A	3156.77	.	AC=1;AF=0.500;AN=2;DP=459;set=Intersection	GT:AD:AF:DP	0/1:291,167:0.36:458
chr1	155280104	rs35556344	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.536;QD=1.42;ReadPosRankSum=-0.417;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr1	155294274	rs914616	A	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	155294772	rs4971075	A	G	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr1	155313047	rs4971051	T	C	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	155408635	rs4971053	T	C	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	155532316	rs12403379	T	C	25967.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=45.24;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,574:1.00:574
chr1	155532325	rs12403380	T	C	28802.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=46.46;SOR=1.113;set=HC	GT:AD:AF:DP	1/1:0,620:1.00:620
chr1	155532332	rs34869594	T	C	30762.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=46.40;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,663:1.00:663
chr1	155532341	rs61812107	T	C	30303.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=43.67;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,694:1.00:694
chr1	155533153	rs148794484	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr1	155618415	rs5777949	CT	C	10123.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr1	155631307	.	A	AAC	326.86	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr1	155686739	rs377724521	CA	C	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.589;QD=1.36;ReadPosRankSum=1.675;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:73,30:0.29:103
chr1	155691191	.	GTA	G	41	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=60.57;NF=4;NR=0;PP=41;QD=12.25;SC=ATGTATGTATGTATATATATA;SbPval=1.0;Source=Platypus;TC=17;TCF=12;TCR=5;TR=4;WE=155691200;WS=155691181;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr1	155701055	rs111619259	C	CA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.891;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.875;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr1	155724315	.	G	GT	112.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.369;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	155737385	rs849712	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.87;QD=28.60;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	155737425	.	AACACAC	A,AAC	994	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=25;MMLQ=25;MQ=49.12;NF=1,1;NR=26,26;PP=108,994;QD=4.11111111111;SC=GATCAAGAGAAACACACACAC;SbPval=0.59;Source=Platypus;TC=30;TCF=1;TCR=29;TR=27,27;WE=155737438;WS=155737415;set=Platypus	GT:AF:DP	0/1:0.90:30
chr1	155746340	rs60525991	CTT	CT,C	259.79	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:0.90:20
chr1	155755097	rs822021	G	A	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	155785578	rs148569012	CAACT	C	9372.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	155822971	rs822490	C	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	155823002	rs822491	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	155829360	rs1749412	C	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	155837865	rs822522	G	C	10154.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr1	155838267	rs822521	T	C	11981.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	155850558	rs822508	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	155850811	rs822509	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	155870416	rs1749409	G	A	12473.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr1	155880573	rs493446	C	G	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr1	155880760	rs5777961	C	CA	2732.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	155891045	rs625658	A	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	155891877	rs4020747	C	CAG	2602.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	155899020	rs539602	A	T	10387.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr1	155903310	rs4661150	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	155903408	rs4661151	C	T	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	155904177	rs2275079	T	C	47140.77	.	AC=2;AF=1.00;AN=2;DB;DP=1775;set=Intersection	GT:AD:AF:DP	1/1:0,1771:1.00:1771
chr1	155904392	rs2275081	G	A	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	155912486	rs2152051	T	C	11116.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr1	155917880	rs1010033	T	A	13774.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr1	155928232	rs2364404	T	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	155928242	rs2886069	C	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	155931368	rs4661175	G	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	155955076	rs4661216	A	G	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	155979571	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.101;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	155981489	rs1475766	C	G	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	155989179	.	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=7.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.640;SOR=0.107;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr1	156011444	rs2297792	T	C	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=26.12;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	156013676	rs34673835	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:81,45:0.36:126
chr1	156025096	rs7541	C	T	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:404,199:0.33:603
chr1	156124628	rs184869627	A	G	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr1	156131050	rs191795474	A	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.822;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.093;QD=3.09;ReadPosRankSum=0.818;SOR=0.068;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	156131095	.	C	CGGGGCGG,CGGGGGGG	572	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.4;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=24;MMLQ=22;MQ=56.93;NF=10,10;NR=4,4;PP=572,169;QD=42.3571428571;SC=GCTGGGGGGTCGGGGCGCCCG;SbPval=0.33;Source=Platypus;TC=44;TCF=35;TCR=9;TR=14,14;WE=156131108;WS=156131085;set=Platypus	GT:AF:DP	0/1:0.32:44
chr1	156132909	rs143862668	GCA	G	1435.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr1	156133038	rs7555253	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	156146086	.	C	CA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.594;QD=1.96;ReadPosRankSum=-0.567;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr1	156146218	rs12401573	C	T	12672.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	156169610	rs2072499	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr1	156177871	.	C	G	727.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:85,39:0.31:124
chr1	156182710	rs2241107	T	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr1	156202173	rs1052053	A	G	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.381;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:204,82:0.29:286
chr1	156203572	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=1.322;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	156206121	rs1052067	G	A	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:254,137:0.35:391
chr1	156247907	rs2248273	C	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	156255833	rs2842883	G	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	156279210	rs3001784	T	C	3425.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	156280296	rs72414608	GATAA	G	2763.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.67;QD=43.18;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	156287360	rs2249790	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	156288906	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.863;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	156303527	rs2764402	C	A,T	1175.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	1/2:0.40,0.60:43
chr1	156347131	rs2245623	G	A	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:572,248:0.30:820
chr1	156347834	rs11586833	T	A	6581.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:101,297:0.75:398
chr1	156351066	rs942679	C	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:191,82:0.30:273
chr1	156351699	rs3748569	G	A	6076.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:123,272:0.69:395
chr1	156351792	rs3748568	G	A	4819.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:115,220:0.66:335
chr1	156352447	rs954916	G	T	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,49:0.77:64
chr1	156354367	rs6668857	A	G	14202.77	.	AC=1;AF=0.500;AN=2;DB;DP=1027;set=Intersection	GT:AD:AF:DP	0/1:355,669:0.65:1024
chr1	156374256	rs3431	C	T	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:66,122:0.65:188
chr1	156376680	rs6662064	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	156446242	rs2274316	C	A	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	156446450	rs12131289	C	T	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	156446903	rs2274317	T	C	6676.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr1	156450740	rs1925950	G	A	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	156452870	rs2282286	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	156496188	rs6427315	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	156497857	.	C	G	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DP=469;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.941;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:357,110:0.24:467
chr1	156498673	rs1171564	T	A	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:162,97:0.37:259
chr1	156499969	rs1171566	T	C	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:436,225:0.34:661
chr1	156500128	rs746505	T	C	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.853;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=2.003;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr1	156502991	rs1609666	A	G	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr1	156503541	rs6699212	T	C	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	156505061	rs942965	C	T	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:72,30:0.29:102
chr1	156509552	rs1171570	C	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	156518379	rs744224	G	A	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:200,88:0.31:288
chr1	156520173	rs1778819	T	A	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	156520320	rs1778818	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr1	156524221	rs6694580	G	T	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:113,58:0.34:171
chr1	156526234	rs2489139	C	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	156526387	rs11264498	C	G	6084.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:75,267:0.78:342
chr1	156526444	rs2488269	T	C	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	156526564	rs2489138	C	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=1.784;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr1	156531871	rs1171545	A	G	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	156532344	rs7548309	T	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:32,76:0.70:108
chr1	156532908	rs16837492	C	A	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:92,155:0.63:247
chr1	156532977	rs1171547	T	C	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	156534525	rs4661184	A	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr1	156534539	rs4661185	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	156536123	rs2066378	T	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=2.876;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	156536133	rs4382715	A	G	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.08;SOR=2.658;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	156536221	rs2066377	G	C	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	156536251	rs947662	T	C	9748.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	156536353	rs947663	A	G	12750.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr1	156536480	rs947664	T	C	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	156539154	rs6427319	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	156551848	rs6682716	A	G	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr1	156553102	rs34924172	AG	A	937.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:115,46:0.29:161
chr1	156553762	rs11264502	A	C	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	156556321	rs10796961	G	A	14787.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:1,566:1.00:567
chr1	156561414	rs6698493	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	156561557	rs149629319	G	GGGGCCGGGCC,GGGGTCGGGCC	2284.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;set=Intersection	GT:AF:DP	1/2:0.75,0.25:52
chr1	156561651	rs7516274	G	C	5626.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	156562008	rs1925949	G	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	156562143	rs942959	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	156563375	rs6427321	G	A	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	156563726	rs6427322	A	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	156563813	rs6668178	G	A	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	156563852	rs942963	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	156563898	rs1270	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	156564640	rs3795732	G	A	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:39,80:0.67:119
chr1	156564922	rs3795733	C	T	8125.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:178,352:0.66:530
chr1	156565049	rs72559129	A	AAC	30684.73	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr1	156565834	rs12024215	G	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:63,29:0.32:92
chr1	156566111	rs6666910	T	C	5913.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:141,264:0.65:405
chr1	156567496	rs879461	C	T	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr1	156594364	rs12405992	T	C	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=4.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.181;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:210,77:0.27:287
chr1	156594656	rs12567958	C	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr1	156617968	rs2277873	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr1	156618768	rs4661209	T	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	156622252	rs1056695	G	A	7641.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	156626358	rs6700323	C	A	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	156626920	rs7524611	T	C	16863.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr1	156628717	rs951964	C	A	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	156629037	rs11360	A	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	156641537	rs951781	C	T	9106.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	156646668	rs4278369	A	G	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr1	156670545	rs4661213	C	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	156693135	rs1133856	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:172,97:0.36:269
chr1	156705593	rs4311877	G	C	15134.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr1	156706559	rs8658	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	156707775	rs6670122	T	G	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	156713512	rs4437869	C	T	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	156713558	rs4399146	G	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	156752048	rs2274503	C	G	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:70,160:0.70:230
chr1	156752231	rs367770256	AT	A	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	156760887	rs11264554	C	A	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:104,182:0.64:286
chr1	156761618	rs2644615	C	T	1685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.923;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:344,118:0.26:462
chr1	156784982	rs926103	T	C	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:56,78:0.58:134
chr1	156785617	rs1800601	G	A	6105.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:142,272:0.66:414
chr1	156785762	rs11325907	AG	A	7885.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:121,199:0.62:320
chr1	156785771	rs7546838	A	G	8478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=5.400;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.756;QD=27.00;ReadPosRankSum=0.273;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:113,201:0.64:314
chr1	156785779	rs1800600	G	A	7527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.724;QD=26.05;ReadPosRankSum=0.138;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:98,191:0.66:289
chr1	156823801	rs55757706	G	T	13011.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:247,575:0.70:822
chr1	156845492	rs144271100	A	AGT,AGTGT	3405.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=362;set=Intersection	GT:AF:DP	1/2:0.28,0.64:162
chr1	156848995	rs6337	C	T	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.129;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:162,63:0.28:225
chr1	156874874	rs78436112	TGG	T	1801.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:13,51:0.80:64
chr1	156875037	rs6676171	T	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr1	156875092	rs4661074	G	A	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.705;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=1.524;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:78,34:0.30:112
chr1	156875097	rs4661075	G	A	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=1.263;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:84,37:0.31:121
chr1	156875107	rs2644590	C	A	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=2.789;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:106,39:0.27:145
chr1	156875377	rs2644591	G	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	156875985	rs2644593	G	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	156877457	rs1952294	T	C	18378.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,693:1.00:693
chr1	156878420	rs4661076	GC	AT	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;JOINED;set=Intersection	GT:AD:AF:DP	0/1:5,31:0.86:36
chr1	156882261	rs57731889	C	T	7834.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:154,345:0.69:499
chr1	156883493	rs11264581	G	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr1	156883546	rs12137505	A	G	8343.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	156884365	rs749256	T	C	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr1	156894006	rs822438	C	G	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	156900129	rs143968626	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr1	156902259	rs822430	G	A	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr1	156907081	rs945508	T	C	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	156907115	rs868188	T	C	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	156912646	.	C	CAG	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=2.761;QD=8.84;ReadPosRankSum=-0.547;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr1	156912650	.	G	GAGTGC	771	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=60.88;NF=1;NR=9;PP=771;QD=80.6;SC=GGGTGACAGAGTGGGACTCAA;SbPval=0.61;Source=Platypus;TC=44;TCF=4;TCR=40;TR=10;WE=156912661;WS=156912640;set=Platypus	GT:AD:AF:DP	1/0:34,10:0.23:44
chr1	156912652	.	G	GCA	426.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=0.109;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr1	156912653	.	G	GT	426.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.592;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr1	156914240	rs5778015	CCATT	C	2623.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	156918137	rs12138039	C	T	1846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.937;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-2.105;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:321,117:0.27:438
chr1	156948956	rs3831270	CCCT	C	661.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:75,23:0.23:98
chr1	156949153	rs36031299	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.198;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	156954267	rs6427339	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:129,63:0.33:192
chr1	156954384	rs6427340	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	157062364	rs1176536	G	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr1	157062696	rs1176537	G	T	5717.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:124,264:0.68:388
chr1	157067893	.	AT	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=1.711;QD=1.62;ReadPosRankSum=-0.356;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	157095470	rs2231856	A	G	10507.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:239,488:0.67:727
chr1	157485561	rs3811035	G	A	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.86;SOR=1.719;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	157485720	rs1002967	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	157489516	rs1332714	T	G	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=0.491;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:23,55:0.71:78
chr1	157491173	rs6427383	T	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	157497263	rs3761961	T	C	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	157508882	rs6427384	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	157509025	rs2012199	C	T	10676.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr1	157514097	rs6679793	A	G	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	157550066	rs10489673	T	C	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=1.875;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:455,141:0.24:596
chr1	157551405	rs143188744	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.549;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr1	157557701	rs2777962	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:64,21:0.25:85
chr1	157557957	rs11799853	T	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:61,145:0.70:206
chr1	157559122	rs11582663	C	T	1841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.241;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.876;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:261,108:0.29:369
chr1	157566019	rs10489674	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr1	157566211	rs12744410	A	G	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:72,119:0.62:191
chr1	157567751	rs1361889	A	G	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr1	157651017	rs1806798	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr1	157652929	rs141977401	TA	T	1998.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:64,119:0.65:183
chr1	157653118	.	C	T	1197.77	.	AC=1;AF=0.500;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	0/1:98,64:0.40:162
chr1	157668390	rs7522061	T	C	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:58,180:0.76:238
chr1	157669580	rs58517866	T	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:41,97:0.70:138
chr1	157670290	rs945635	C	G	4460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=1.911;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:82,210:0.72:292
chr1	157718231	rs143605468	CAAAT	C	3235.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:25,84:0.77:109
chr1	157718283	rs6696643	A	T	7471.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:55,186:0.77:241
chr1	157718325	rs3818813	T	G	8319.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:87,234:0.73:321
chr1	157718430	rs2275232	T	G	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:63,140:0.69:203
chr1	157718645	rs2275233	T	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr1	157718780	rs3818814	A	G	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=2.926;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:24,57:0.70:81
chr1	157718835	rs6662117	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr1	157737504	rs2873413	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr1	157739631	rs56360917	C	T	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:123,55:0.31:178
chr1	157740186	rs10540465	GTC	G	6809.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:60,169:0.74:229
chr1	157740189	rs57139984	A	G	6818.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:57,169:0.75:226
chr1	157771880	rs4971154	C	T	2957.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:315,165:0.34:480
chr1	157802877	rs2765500	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	157802979	rs2261295	C	T	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	157806006	rs2765503	G	A	10778.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.09;SOR=1.326;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr1	157806006	.	GTACTC	ATACTC,ATACTT	2568	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=100,60;NR=170,106;PP=1124,2568;QD=4.29174523166;SC=CCTTAGGCATGTACTCAGTCA;SbPval=0.5;Source=Platypus;TC=271;TCF=100;TCR=171;TR=270,166;WE=157806019;WS=157805996;set=Platypus	GT:AF:DP	0/1:1.00:271
chr1	157806011	.	C	T	4004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=3.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-1.526;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:86,177:0.67:263
chr1	157811392	rs2260040	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	158047657	rs12133744	G	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	158056299	rs7367384	C	G	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	158057420	rs7514301	A	T	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	158058109	rs6427419	C	A	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	158058266	rs10578077	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=12.854;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.122;QD=3.45;ReadPosRankSum=0.774;SOR=2.240;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr1	158064165	.	G	A	1247.77	.	AC=1;AF=0.500;AN=2;DP=238;set=Intersection	GT:AD:AF:DP	0/1:158,76:0.32:234
chr1	158066834	rs6427420	A	G	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	158067047	rs874844	A	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	158067060	rs11339854	TG	T	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	158146946	rs3021477	T	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	158151218	rs859013	A	G	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:29,82:0.74:111
chr1	158153996	rs426336	T	C	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	158224575	rs55696033	CTGTG	C,CTGTGTG	647.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=366;set=Intersection	GT:AF:DP	0/1:0.30:141
chr1	158260878	rs375739413	CT	C	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.852;QD=0.61;ReadPosRankSum=1.072;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:280,72:0.20:352
chr1	158549449	rs950164	C	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:72,119:0.62:191
chr1	158565115	rs1332688	G	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	158577167	rs2427808	A	T	826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.273;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:138,53:0.28:191
chr1	158587784	rs857717	T	G	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	158607788	rs2518492	T	G	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	158619728	rs2482965	A	C	4732.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.86;ReadPosRankSum=-1.674;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr1	158624601	.	CA	C	1568.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr1	158637865	rs5778087	GA	G	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.072;QD=6.18;ReadPosRankSum=1.372;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:37,49:0.57:86
chr1	158639601	rs2298801	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=6.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-2.210;SOR=1.243;set=HC	GT:AD:AF:DP	0/1:112,35:0.24:147
chr1	158644105	rs703116	T	A	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.469;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.632;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:204,76:0.27:280
chr1	158647495	rs325996	A	T	9126.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	158647522	rs703121	A	G	4531.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:91,208:0.70:299
chr1	158647631	rs325995	T	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	158647669	rs703122	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr1	158654786	rs385096	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	158654852	rs857937	A	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,75:0.64:117
chr1	158655036	rs435080	G	A	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	158655162	rs2564859	C	A	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr1	158656281	rs2564858	T	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	158656347	rs111674514	C	CAG,CAGAG	1693.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	1/2:0.24,0.70:50
chr1	158724537	rs34126693	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr1	158735595	rs857824	C	T	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	158735691	rs857825	T	C	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	158735740	rs857826	A	G	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	158735892	rs857827	A	G	7076.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr1	158736215	rs6666753	G	A	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	158736445	rs1864346	C	T	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	158736517	rs1864347	A	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	158813819	rs857870	A	G	10473.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	158817474	rs2261107	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	158906555	rs1633280	A	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	158913525	rs856082	A	G	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	158943295	rs144676333	T	TCA	854.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr1	158946629	rs145608153	A	AATATATGTAT	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.178;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	158946658	rs145640162	CTATATATATATATATATATATATATATA	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=1.871;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	158986477	rs866484	G	C	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.354;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:339,107:0.24:446
chr1	158987941	rs856046	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:72,37:0.34:109
chr1	158990247	rs1057024	A	G	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:51,103:0.67:154
chr1	159002222	rs861318	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr1	159002301	rs2518553	T	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:179,99:0.36:278
chr1	159002377	rs1057027	C	A	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:296,136:0.31:432
chr1	159002389	rs1057028	T	A	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:262,122:0.32:384
chr1	159021445	rs3737522	A	G	4550.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:76,195:0.72:271
chr1	159024424	rs7532207	A	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	159024668	rs6940	A	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr1	159043352	rs74555135	G	A	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:61,135:0.69:196
chr1	159169641	rs862999	T	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	159174824	rs863001	G	C	23628.77	.	AC=2;AF=1.00;AN=2;DB;DP=898;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,896:1.00:896
chr1	159175004	rs17838198	CT	C	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr1	159175428	rs118062001	C	T	13523.77	.	AC=1;AF=0.500;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	0/1:285,604:0.68:889
chr1	159249187	rs10489855	G	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr1	159249451	rs57414108	T	TA	2912.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:53,151:0.74:204
chr1	159249743	rs11265163	G	T	4240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.026;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.30;ReadPosRankSum=1.197;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:73,109:0.60:182
chr1	159249743	.	GTG	TTT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=30;NR=64;PP=2944;QD=20;SC=CCTTATCACTGTGTGGTTCTC;SbPval=0.61;Source=Platypus;TC=171;TCF=57;TCR=114;TR=94;WE=159249753;WS=159249733;set=Platypus	GT:AD:AF:DP	0/1:77,94:0.55:171
chr1	159249745	rs11265164	G	T	4240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.754;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.82;ReadPosRankSum=1.921;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:73,105:0.59:178
chr1	159272764	rs12119226	C	T	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:86,191:0.69:277
chr1	159275706	rs2269718	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	159277804	rs79965525	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr1	159320979	rs10908710	G	A	10244.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:265,471:0.64:736
chr1	159401992	rs116790194	C	T	1924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.569;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:298,112:0.27:410
chr1	159402115	rs151220456	C	T	4890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=1057;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.478;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:754,299:0.28:1053
chr1	159402584	rs11419544	G	GT	4627.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	159409196	rs6691297	T	C	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	159409533	rs10908721	G	A	5080.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	159409734	rs10908722	G	T	19964.77	.	AC=2;AF=1.00;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	1/1:0,748:1.00:748
chr1	159409857	rs12048482	A	G	12574.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr1	159505297	rs4656837	C	T	12432.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr1	159558258	rs2808661	A	G	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr1	159684047	rs113155790	CCACACACA	C	1196.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.472;QD=26.58;ReadPosRankSum=-0.057;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:7,38:0.84:45
chr1	159750802	rs3806189	G	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr1	159772291	rs145368576	G	A	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=2.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.540;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:327,113:0.26:440
chr1	159778699	rs12042065	G	A	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=4.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.255;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:170,63:0.27:233
chr1	159783412	rs76282094	A	G	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:62,173:0.74:235
chr1	159785284	rs4411129	C	G	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	159799599	rs11422063	C	CA	4061.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	159802627	rs2494480	A	C	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:38,105:0.73:143
chr1	159807969	rs2494491	A	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:18,63:0.78:81
chr1	159824967	rs2501340	G	C	14803.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr1	159825061	rs2501339	G	C	10018.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	159826561	rs111861505	C	CCACA	1473.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.019;QD=21.67;ReadPosRankSum=0.432;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:23,45:0.66:68
chr1	159827416	rs4477268	C	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr1	159827456	rs2494503	A	G	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr1	159827475	rs11584200	G	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr1	159828128	rs2494504	A	G	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	159828746	rs2501337	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr1	159842088	rs2494518	T	A	438.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.95;ReadPosRankSum=-0.058;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr1	159842691	rs4460634	C	G	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:26,111:0.81:137
chr1	159850401	rs7550537	C	G	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.118;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:131,44:0.25:175
chr1	159854392	rs2501325	C	A	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr1	159889686	rs2252815	G	A	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:51,136:0.73:187
chr1	159890459	rs11265297	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:73,25:0.26:98
chr1	159897126	rs13052	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	159897388	rs1934074	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:85,45:0.35:130
chr1	159897559	rs1319080	G	T	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:37,60:0.62:97
chr1	159897681	rs77828868	TAAA	T,TA	3615.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.206;QD=24.77;ReadPosRankSum=-0.758;SOR=0.578;set=HC	GT:AD:AF:DP	1/2:12,48,86:0.33,0.59:146
chr1	159898100	rs3747615	A	G	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	159898913	rs7543462	A	G	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr1	159901250	rs145015387	G	A	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:503,228:0.31:731
chr1	159902526	rs3827531	T	C	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	159906156	rs10908750	A	G	2210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.303;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:374,143:0.28:517
chr1	159906849	rs10797055	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr1	159907362	rs7524321	A	G	2125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.739;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.289;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:113,59:0.34:172
chr1	159907367	rs7526647	T	C	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.967;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:130,64:0.33:194
chr1	159907441	rs12751760	C	T	9048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=2.172;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:230,417:0.64:647
chr1	159922369	rs2840583	C	T	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	159922458	rs1317520	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr1	159923111	rs2789417	T	G	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr1	160057522	rs3001040	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-1.354;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	160064592	rs12044027	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr1	160068068	rs12046504	A	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr1	160090674	rs2854246	T	C	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	160090681	rs67915591	CCCTT	C	6761.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	160093222	rs2820581	C	T	14390.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr1	160093911	rs2820582	T	C	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	160095127	rs7548116	T	A	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	160097666	rs6695366	G	A	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr1	160098927	rs5778151	A	AG	2045.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	160121746	rs746362	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	160122826	rs11265335	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:3,81:0.96:84
chr1	160125802	rs41288131	C	T	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:98,138:0.58:236
chr1	160126020	rs12410580	G	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=1.047;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr1	160128671	rs4656888	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	160128994	rs10908764	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	160134205	rs11265338	C	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	160137300	rs4656889	A	C	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	160140998	rs1209804	G	A	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	160141196	rs625549	C	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	160141285	rs669162	CC	TG	13395.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr1	160145707	rs11805919	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr1	160147502	rs731852	T	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=0.922;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:92,45:0.33:137
chr1	160147517	rs11801984	A	G	1344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.628;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.524;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:78,40:0.34:118
chr1	160147521	rs11806793	C	T	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=0.587;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chr1	160163446	rs3747621	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	160163509	rs3747623	C	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	160164668	rs1186693	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	160165442	rs35846599	G	GC	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-1.144;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr1	160168368	rs822450	G	A	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:59,122:0.67:181
chr1	160169473	rs959166	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	160178356	rs667306	A	G	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	160232929	rs61480108	AT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=6.122;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.000;QD=0.54;ReadPosRankSum=-0.294;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr1	160233265	rs11455653	C	CA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.878;QD=3.06;ReadPosRankSum=0.636;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	160233345	rs6688586	C	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-1.453;QD=7.80;ReadPosRankSum=-0.566;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	160247185	rs10594	G	C	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=4.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.972;SOR=0.401;set=HC	GT:AD:AF:DP	0/1:124,52:0.30:176
chr1	160251792	rs2795067	A	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:164,87:0.35:251
chr1	160260233	rs2298104	T	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.575;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:67,40:0.37:107
chr1	160263124	rs1317944	C	T	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:282,122:0.30:404
chr1	160265515	rs3789042	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr1	160275434	rs2066320	A	G	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.613;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=5.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.803;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:142,71:0.33:213
chr1	160303416	rs1802778	G	A	2116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.532;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:350,139:0.28:489
chr1	160309664	rs1886419	T	G	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.417;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:202,67:0.25:269
chr1	160313733	rs1886417	C	A	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=2.444;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:82,31:0.27:113
chr1	160313744	rs35301624	GT	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.000;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	160318940	rs6669689	A	G	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.736;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.884;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:111,40:0.26:151
chr1	160319055	rs12239946	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr1	160321181	rs141903340	A	T	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:37,132:0.78:169
chr1	160458782	rs3795327	A	G	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr1	160580015	rs1061217	A	G	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	160582213	rs2025515	C	A	826.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=0.345;SOR=0.680;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr1	160582248	rs11265449	C	G	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	160585554	rs149160	C	G	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr1	160585706	rs151607	C	T	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	160650913	rs4656926	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	160681653	rs57782077	G	GA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.654;QD=1.42;ReadPosRankSum=0.069;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr1	160717872	rs527733	T	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	160720074	rs11581248	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr1	160722064	rs527342	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	160766179	rs3831924	C	CT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	160789196	rs537540	A	C	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	160803802	rs11265493	A	G	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr1	160809003	rs6682654	G	A	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	160849030	rs3766358	T	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr1	160849060	rs3766359	G	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,29:0.30:97
chr1	160849082	rs3820094	A	G	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:93,41:0.31:134
chr1	160849367	rs2274905	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr1	160850280	rs4656957	G	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr1	160850936	rs2236515	T	C	4633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=1100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.979;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:795,302:0.28:1097
chr1	160851594	rs56380748	GAAAAAAA	G	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=1.039;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	160851619	rs10908808	A	G	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.295;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr1	160851826	rs2274907	A	T	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-2.216;QD=4.65;ReadPosRankSum=0.527;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:154,58:0.27:212
chr1	160851894	rs2274908	G	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.624;QD=4.11;ReadPosRankSum=1.097;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:136,51:0.27:187
chr1	160852022	rs2274909	C	T	1313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.106;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:221,85:0.28:306
chr1	160852046	rs2274910	T	C	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.254;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:185,66:0.26:251
chr1	160854526	rs2297559	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.271;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr1	160917902	rs1556519	T	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	160920809	rs3829790	A	G	21009.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=44.61;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,471:1.00:471
chr1	160920813	rs790059	A	G	20925.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=44.81;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,467:1.00:467
chr1	160920966	rs6680969	C	T	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr1	160921230	rs4656971	T	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	160924426	rs12401642	G	A	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.368;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:278,110:0.28:388
chr1	160968609	rs41269993	G	A	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:34,112:0.77:146
chr1	160969008	rs3831190	T	TG	2231.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr1	160969110	rs2297222	T	C	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:45,134:0.75:179
chr1	160969585	rs790056	C	T	9105.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:248,420:0.63:668
chr1	160969930	rs869985	A	C	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr1	160970968	rs2297221	G	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr1	160971015	rs2297220	G	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr1	160971146	rs790055	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.80;ReadPosRankSum=2.451;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:30,76:0.72:106
chr1	160971155	rs2297219	G	C	3142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.10;ReadPosRankSum=0.921;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:28,80:0.74:108
chr1	160990906	rs2481085	G	A	8027.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:165,339:0.67:504
chr1	161010762	rs2073658	C	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr1	161010774	rs2516841	A	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr1	161010791	rs2073657	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr1	161011716	rs2774276	G	C	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:33,84:0.72:117
chr1	161012590	rs2073655	G	A	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:47,119:0.72:166
chr1	161013121	rs2516839	C	T	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:36,116:0.76:152
chr1	161019040	rs3813609	G	C	11602.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:205,519:0.72:724
chr1	161022380	rs4396136	G	A	5217.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:82,214:0.72:296
chr1	161022639	rs3813610	C	G	55.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.16;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	161043735	rs4656285	A	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr1	161043764	rs4656978	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr1	161047125	rs60601836	CTATA	C	929.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	161049358	rs3820097	G	A	7433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.55;ReadPosRankSum=-0.218;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:171,340:0.67:511
chr1	161088583	rs41270017	T	G	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.008;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:106,42:0.28:148
chr1	161089450	rs111473243	C	CTAAACT	1188.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr1	161092761	rs17389237	A	G	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=1.819;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:189,66:0.26:255
chr1	161094190	rs1135783	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:154,81:0.34:235
chr1	161126641	rs61124670	T	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.364;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:99,39:0.28:138
chr1	161126705	rs76617482	A	G	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:194,98:0.34:292
chr1	161126975	rs12031437	C	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:116,65:0.36:181
chr1	161136843	rs2301287	C	G	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.600;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:208,85:0.29:293
chr1	161139738	rs36013429	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:149,65:0.30:214
chr1	161143801	rs3813619	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:154,70:0.31:224
chr1	161143969	rs11265561	A	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	161145005	rs3813620	C	T	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.513;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:153,54:0.26:207
chr1	161161284	rs41270041	G	C	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.250;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:214,93:0.30:307
chr1	161162173	rs7512012	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	161163037	rs4233367	T	C	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.110;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr1	161163633	rs3813622	C	T	14418.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr1	161167698	rs4589131	T	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	161168004	rs33941127	C	T	9455.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:219,423:0.66:642
chr1	161172233	rs11538340	C	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:113,52:0.32:165
chr1	161176137	rs4656993	A	G	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	161179877	rs4656994	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:126,61:0.33:187
chr1	161184059	rs10629771	C	CTG,CTGTGTG	510.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;set=Intersection	GT:AF:DP	1/2:0.36,0.43:28
chr1	161184097	rs1136224	A	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	161185058	rs2070901	G	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:45,73:0.62:118
chr1	161187665	rs2070902	C	T	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:33,65:0.66:98
chr1	161191339	rs12721035	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr1	161191450	.	CTTTTTTT	C	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=5.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=2.375;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr1	161191462	.	T	C	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=1.106;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr1	161191522	rs685	A	G	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr1	161192316	rs6413453	G	A	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr1	161192845	.	CCACACACACA	C,CCACA	9318.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=4.214;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.167;QD=38.35;ReadPosRankSum=0.720;SOR=1.090;set=HC	GT:AD:AF:DP	1/2:4,91,148:0.37,0.61:243
chr1	161192879	.	ACACACT	A	2997	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=28;MMLQ=28;MQ=60.23;NF=18;NR=156;PP=2997;QD=20;SC=ACACACACACACACACTCTTT;SbPval=0.88;Source=Platypus;TC=213;TCF=31;TCR=182;TR=174;WE=161192892;WS=161192869;set=Platypus	GT:AD:AF:DP	0/1:39,174:0.82:213
chr1	161196166	rs3813628	A	C	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-2.218;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr1	161197244	rs4233368	C	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	161200487	rs4073054	C	A	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	161201350	rs11265567	G	T	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.127;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr1	161201350	.	GCG	TCA	509	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=28;MQ=59.48;NF=5;NR=8;PP=509;QD=43.2667596048;SC=GAGTGCAGTGGCGTGATCTCT;SbPval=0.46;Source=Platypus;TC=36;TCF=12;TCR=24;TR=13;WE=161201360;WS=161201340;set=Platypus	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	161201352	rs11265568	G	A	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.389;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr1	161202605	rs2307424	G	A	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.637;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.436;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:125,45:0.26:170
chr1	161204906	rs3123553	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	161205050	rs7414014	T	C	186.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=1.335;QD=14.31;ReadPosRankSum=2.096;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr1	161205898	rs6686001	G	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr1	161208254	.	AAG	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.697;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:105,17:0.14:122
chr1	161209164	rs79769623	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.590;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr1	161228843	rs16832733	G	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr1	161253657	rs4255401	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	161253684	rs66526557	AT	A	363.75	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr1	161276434	rs6674383	A	G	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	161293492	.	A	AT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.772;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.368;QD=2.76;ReadPosRankSum=0.142;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	161332091	rs34744926	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.920;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	161487863	rs143182858	C	T	14115.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:278,633:0.69:911
chr1	161488017	rs150991486	T	C	3452.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:68,139:0.67:207
chr1	161495040	rs63749092	C	T	4054.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:78,169:0.68:247
chr1	161495477	rs72633678	A	T	8158.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:193,358:0.65:551
chr1	161495885	rs404508	T	C	8225.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:140,356:0.72:496
chr1	161496134	rs753856	C	G	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr1	161496178	rs368844	G	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr1	161514542	rs396991	A	C	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:76,162:0.68:238
chr1	161518214	rs148181339	T	C	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=7.256;MLEAC=1;MLEAF=0.500;MQ=50.22;MQRankSum=-4.362;QD=0.72;ReadPosRankSum=2.082;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:225,37:0.14:262
chr1	161518908	rs138032965	C	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,71:0.72:98
chr1	161559256	rs114945036	C	T	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,40:0.32:124
chr1	161559327	rs3933769	A	G	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:232,101:0.30:333
chr1	161559571	rs138747765	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:84,49:0.37:133
chr1	161561287	rs151302833	A	G	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.68;QD=30.03;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	161563386	rs72700089	C	T	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr1	161565324	rs61801822	C	T	2266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.967;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=2.088;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-16.106;QD=4.11;ReadPosRankSum=-0.504;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:413,139:0.25:552
chr1	161565479	rs111504845	G	A	2759.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:350,157:0.31:507
chr1	161569419	rs430178	C	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.61;QD=29.88;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	161576227	rs145679054	C	G	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.076;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.09;MQRankSum=-2.007;QD=4.87;ReadPosRankSum=0.735;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	161577204	rs200837054	G	T	4583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.55;MQRankSum=1.518;QD=16.31;ReadPosRankSum=-2.618;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:90,191:0.68:281
chr1	161577669	rs61802307	G	A	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:197,98:0.33:295
chr1	161594226	rs61803008	C	T	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	161594246	rs61803009	G	T	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	161594525	rs61803010	GT	CG	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	161596283	rs418215	G	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	161599693	rs76714703	T	C	4091.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.705;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.763;MLEAC=2;MLEAF=1.000;MQ=47.84;MQRankSum=-3.236;QD=22.86;ReadPosRankSum=0.645;SOR=1.324;set=HC	GT:AD:AF:DP	1/1:16,163:0.91:179
chr1	161600287	rs143868437	AT	A	837.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr1	161600995	rs34085961	C	T	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.677;QD=3.94;ReadPosRankSum=-1.189;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:255,90:0.26:345
chr1	161601118	rs61803026	G	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr1	161601133	rs61803027	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	161642985	rs182968886	G	A	6392.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:22,269:0.92:291
chr1	161644976	rs1674758	C	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	161676904	rs1340977	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr1	161676970	rs1340978	A	G	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr1	161680159	rs151210623	G	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:112,45:0.29:157
chr1	161680258	rs6427618	G	A	4543.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:95,204:0.68:299
chr1	161681661	rs1105238	C	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.388;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:103,23:0.18:126
chr1	161681780	rs2275603	A	G	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.887;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:271,72:0.21:343
chr1	161683136	rs11746	G	A	4436.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:87,194:0.69:281
chr1	161693003	rs4657093	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.119;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-2.371;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr1	161693306	.	C	T	1969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DP=378;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.605;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:260,116:0.31:376
chr1	161695639	rs7520519	G	T	6181.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	161696088	rs1417582	T	C	7984.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:115,342:0.75:457
chr1	161696782	rs11585450	G	C	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:33,113:0.77:146
chr1	161696998	rs1875763	C	G	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=16.27;ReadPosRankSum=0.219;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:14,44:0.76:58
chr1	161721351	rs7540096	A	G	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=10.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=1.172;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr1	161721707	rs1063178	C	T	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=2.925;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:24,45:0.65:69
chr1	161722779	rs35439833	C	CAAA	1569.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr1	161736035	rs2298019	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	161748056	rs2070151	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.635;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:114,27:0.19:141
chr1	161751741	rs1058405	A	G	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:69,83:0.55:152
chr1	161753802	rs2271013	T	C	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:201,95:0.32:296
chr1	161753841	rs2271012	G	A	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:205,99:0.33:304
chr1	161753917	rs1910480	G	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:96,54:0.36:150
chr1	161754004	rs1503807	T	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	161761099	rs12045480	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	161761276	rs2070150	G	C	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.622;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:182,62:0.25:244
chr1	161761312	rs1135983	C	T	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-2.137;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:183,72:0.28:255
chr1	161789625	rs3817085	C	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:96,40:0.29:136
chr1	161822959	rs2340717	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	161823011	rs2257107	T	A	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr1	161823197	rs3215134	G	GT	8198.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	161829973	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-1.378;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr1	161928327	rs9482	A	G	3412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-0.374;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:79,164:0.67:243
chr1	161954448	rs12726227	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	161967681	rs2499836	A	G	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:216,114:0.35:330
chr1	161976234	rs12022536	A	G	3426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=-0.018;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:63,163:0.72:226
chr1	161976272	rs34863451	G	GA	2244.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:85,134:0.61:219
chr1	161993192	rs12130792	T	C	12541.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr1	162302635	rs347306	T	C	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	162302689	rs347307	C	T	6617.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	162313597	rs347278	T	C	12300.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr1	162335052	rs905721	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:62,40:0.39:102
chr1	162335424	rs1964052	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.48;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	162343774	rs7512126	A	G	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr1	162344102	rs2282397	C	T	5611.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:120,249:0.67:369
chr1	162344390	rs164159	A	G	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	162345091	rs164181	G	A	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	162345199	rs164182	T	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.834;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:141,46:0.25:187
chr1	162346433	rs150155141	CA	C	2124.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:42,116:0.73:158
chr1	162348662	rs164188	C	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	162352819	rs1123005	A	G	189.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	162367071	rs17852003	C	T	14307.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr1	162467014	rs10919549	C	G	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:107,45:0.30:152
chr1	162470733	.	C	T	1273.77	.	AC=1;AF=0.500;AN=2;DP=243;set=Intersection	GT:AD:AF:DP	0/1:165,77:0.32:242
chr1	162470961	rs5778280	A	AT	111.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	162560360	.	TTC	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.232;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:119,15:0.11:134
chr1	162722846	rs1632311	C	G	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	162725655	rs1115570	A	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	162740327	rs1780003	T	C	11654.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr1	162742180	rs1704762	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	162743418	rs1355287	G	T	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr1	162745733	rs114960952	G	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.173;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.177;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:60,16:0.21:76
chr1	162748588	rs907074	C	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	162754049	rs11338	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.93;QD=26.21;SOR=1.480;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	162754244	rs61812969	T	G	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.06;QD=30.78;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	162760551	rs1704754	C	T	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.92;QD=45.20;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	162760554	rs71519246	T	C	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.08;QD=44.04;SOR=1.470;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	162765475	rs2684884	G	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.75;QD=25.72;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	162766476	rs1780019	C	T	10839.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr1	162774236	rs77482353	A	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	162775267	rs12563263	C	T	4095.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:107,184:0.63:291
chr1	162787243	rs2803865	T	A	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr1	162822771	rs2684878	A	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	162825258	rs12036026	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=1.841;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr1	163117351	rs3768560	G	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	163122528	rs1354939	G	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	163142537	rs10917691	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr1	163142555	rs12035879	G	A	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	163308027	rs11330875	TA	T	183.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	163309302	rs2999852	C	T	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	163310259	rs61812220	A	G	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=0.209;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:5,27:0.84:32
chr1	163313695	.	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=2.048;QD=2.77;ReadPosRankSum=-3.330;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	164532325	rs4657364	T	C	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr1	164789444	rs1538488	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr1	165173216	rs1354509	A	G	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	165175374	rs4656435	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	165180089	rs1532815	T	A	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	165218792	rs10753668	G	A	20940.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr1	165375895	rs283697	A	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	165376043	rs283696	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	165376227	rs111545739	C	CCG	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	165376231	.	CTG	C	1627.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	165377389	rs283692	T	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	165377552	rs2134095	G	A	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	165378729	rs66800417	TACAC	T,TAC	6531.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=162;set=Intersection	GT:AF:DP	1/2:0.19,0.81:155
chr1	165378733	rs12406497	C	T	3801.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.18;ReadPosRankSum=0.286;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:29,122:0.81:151
chr1	165378733	.	CAC	TAT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=22;MQ=59.9;NF=65;NR=35;PP=2947;QD=20;SC=TGTGTATACACACACACACAC;SbPval=0.37;Source=Platypus;TC=143;TCF=97;TCR=46;TR=100;WE=165378743;WS=165378719;set=Platypus	GT:AD:AF:DP	1/1:43,100:0.70:143
chr1	165378735	rs138671935	C	T	6286.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.108;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.56;ReadPosRankSum=-1.620;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:4,151:0.97:155
chr1	165378737	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.754;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:136,29:0.18:165
chr1	165386567	rs2281986	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	165389129	rs1128977	G	A	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	165513439	rs285446	A	C	227.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	165513456	rs285445	A	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.87;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	165513463	rs285444	C	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.87;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	165533005	rs453717	C	A	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:291,138:0.32:429
chr1	165533188	rs367199	A	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr1	165601466	rs9333378	G	A	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr1	165621129	rs10642555	C	CAAAAAAA	312.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=62.55;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	165621322	rs77176546	TATTATC	T	3516.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:47,88:0.65:135
chr1	165624799	rs8133	G	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr1	165630475	rs7544840	C	T	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr1	165630495	rs7511691	T	C	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	165630698	rs6667681	A	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=9.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=1.218;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:20,48:0.71:68
chr1	165634425	rs3820362	C	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:17,61:0.78:78
chr1	165636749	rs2176151	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:28,69:0.71:97
chr1	165648559	rs4646897	T	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	165648886	rs4646896	G	A	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.55;ReadPosRankSum=-0.656;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:20,51:0.72:71
chr1	165648894	rs4646895	C	G	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.25;ReadPosRankSum=0.094;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,41:0.71:58
chr1	165651153	rs2882006	T	A	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	165651502	rs1913844	G	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	165652273	rs1143659	A	G	7977.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	165652445	rs4233407	A	G	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr1	165667781	rs12408101	T	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr1	165721489	rs72699929	A	T	395.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.600;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	165737704	rs2790053	C	G	6814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=0.898;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:184,341:0.65:525
chr1	165859630	rs477033	C	G	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	165859640	rs138035087	G	GTGT	1952.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=1.164;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:133,57:0.30:190
chr1	166029970	rs4353067	T	C	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.085;QD=5.02;ReadPosRankSum=0.812;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:107,50:0.32:157
chr1	166124134	rs896402	A	G	13485.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr1	166818566	rs2075946	A	G	7595.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:147,348:0.70:495
chr1	166826773	rs6675153	C	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr1	166827602	rs10800270	A	T	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr1	166831404	rs2075947	A	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	166831703	rs35181816	C	CA	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.656;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr1	166833199	rs2272793	C	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:127,58:0.31:185
chr1	166838866	rs71253526	A	AATTTT	940.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr1	166839174	rs4657609	G	A	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr1	166944256	rs59211434	TTC	T	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr1	166944273	rs67253020	TCACA	T,ACACA	895.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	1/2:0.32,0.64:28
chr1	166958601	rs2296837	T	C	5953.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:131,270:0.67:401
chr1	166958710	rs11578336	T	G	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:78,158:0.67:236
chr1	167042762	rs2274531	C	T	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:63,165:0.72:228
chr1	167059336	rs2281964	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	167059462	rs2281963	G	C	17969.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr1	167059575	rs28384507	G	T	15252.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:1,583:1.00:584
chr1	167082869	rs12122365	G	A	10582.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr1	167095163	rs267745	G	C	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	167096931	rs267746	A	C	3760.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:79,162:0.67:241
chr1	167096997	rs113448705	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:130,62:0.32:192
chr1	167097567	rs61748784	G	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:173,94:0.35:267
chr1	167097739	rs2281959	C	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:79,34:0.30:113
chr1	167097945	rs267747	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	167353258	rs35617253	AT	A	2261.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.084;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.239;QD=20.19;ReadPosRankSum=-0.671;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,110:0.98:112
chr1	167367193	rs7524019	C	T	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	167382374	rs10753757	A	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=25.57;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	167382399	.	AGTGTGT	A,AGT	2748.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=95;set=Intersection	GT:AF:DP	1/2:0.22,0.78:67
chr1	167385178	rs35216157	G	GA,GAA	1030.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.056;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.64;MQRankSum=0.895;QD=13.21;ReadPosRankSum=-1.431;SOR=0.230;set=HC	GT:AD:AF:DP	1/2:17,33,28:0.42,0.36:78
chr1	167385222	.	AAAAG	A	1140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-1.371;QD=8.77;ReadPosRankSum=0.738;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:95,35:0.27:130
chr1	167403212	rs952963	G	A	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:72,35:0.33:107
chr1	167403504	rs952962	A	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:25,102:0.80:127
chr1	167404078	rs3108156	G	A	1991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=-2.331;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:28,89:0.76:117
chr1	167404184	.	C	CTCCTCCAGCCCT	2867	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=28;MQ=44.95;NF=6;NR=8;PP=2867;QD=20;SC=CTCCGGAGCCCTCCTCCAGCC;SbPval=0.09;Source=Platypus;TC=53;TCF=12;TCR=41;TR=14;WE=167404192;WS=167404174;set=Platypus	GT:AD:AF:DP	1/0:39,14:0.26:53
chr1	167407858	rs33937946	G	A	2970.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:63,137:0.69:200
chr1	167407915	rs34359201	C	T	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.728;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:118,49:0.29:167
chr1	167408565	rs12141641	G	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:221,88:0.28:309
chr1	167511595	rs41270716	A	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	167515272	rs7513428	T	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	167523004	rs12410167	G	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	167673738	rs34762939	T	TA	309.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr1	167805439	rs7550383	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr1	167806642	rs35986349	C	G	2535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.747;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:181,75:0.29:256
chr1	167806647	rs1034463	T	A	2572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.301;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:173,75:0.30:248
chr1	167806696	rs1034464	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:91,39:0.30:130
chr1	167806714	rs1034465	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr1	167817639	rs203795	A	G	4519.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:81,205:0.72:286
chr1	167871297	.	G	GA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.454;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=9.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=2.553;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:84,19:0.18:103
chr1	167889094	rs17556487	T	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	167893759	rs9618	G	A	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=0.973;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:10,43:0.81:53
chr1	167906239	rs203788	A	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	167971979	rs436256	G	T	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=0.431;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	167971979	.	GC	TG	41	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=41;QD=47.2339374311;SC=GTGGAATGGCGCAGTCACTGG;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=167971988;WS=167971969;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	167971980	rs428694	C	G	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=0.431;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr1	167973976	rs1060041	C	T	8251.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:213,380:0.64:593
chr1	167985326	rs3831959	TG	T	216.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	167988590	rs73026184	A	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr1	167988653	rs202255	A	G	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,72:0.74:97
chr1	167992344	rs201541	T	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,101:0.64:157
chr1	168013850	rs11558511	T	C	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=2.093;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:71,48:0.40:119
chr1	168035104	rs380095	G	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	168056724	rs275143	A	G	4243.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:81,181:0.69:262
chr1	168059866	rs275149	A	G	4594.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:71,207:0.74:278
chr1	168073601	rs2294817	C	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:13,55:0.81:68
chr1	168074145	rs6427119	G	A	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr1	168106716	rs6664903	T	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:188,78:0.29:266
chr1	168165767	.	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=7.968;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.054;QD=0.48;ReadPosRankSum=-0.432;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:113,23:0.17:136
chr1	168260377	rs140045735	A	AGTTTC	2475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.798;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:193,67:0.26:260
chr1	168262289	rs7543224	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:63,36:0.36:99
chr1	168262525	.	G	GTT	340	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=25;MQ=60.0;NF=3;NR=29;PP=340;QD=10.71875;SC=AGGTAAGAGTGTGTGTGTGTG;SbPval=0.26;Source=Platypus;TC=109;TCF=6;TCR=103;TR=32;WE=168262535;WS=168262512;set=Platypus	GT:AD:AF:DP	0/1:77,32:0.29:109
chr1	168262526	rs199592560	TG	T	240.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.063;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr1	168262527	rs12096093	G	T	451.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=1.720;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr1	168262528	.	TG	T	240.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=2.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-0.436;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr1	168274201	rs4656579	G	A	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:21,79:0.79:100
chr1	168278264	rs1883148	G	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr1	168510122	rs470733	T	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	168511155	rs76400946	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	168513067	rs61801330	C	A	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.39;QD=25.88;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	168513109	rs3820404	A	G	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.28;QD=26.90;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	168513214	rs3820406	C	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.092;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=10.682;MLEAC=1;MLEAF=0.500;MQ=45.33;MQRankSum=-4.272;QD=5.07;ReadPosRankSum=1.036;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr1	168513228	rs3820407	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.51;QD=29.68;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	168513274	rs3820410	A	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.28;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	168513320	rs474414	A	G	178.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.12;QD=25.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	168545821	rs61079363	G	A	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr1	168545864	rs116453184	A	G	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:279,109:0.28:388
chr1	168545949	rs34933908	G	A	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:177,238:0.57:415
chr1	168546011	rs371404303	A	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.227;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=17.079;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-12.914;QD=1.22;ReadPosRankSum=-5.923;SOR=2.455;set=HC	GT:AD:AF:DP	0/1:178,23:0.11:201
chr1	168546016	rs138163442	A	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.071;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=25.458;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-12.779;QD=0.71;ReadPosRankSum=-4.493;SOR=4.346;set=HC	GT:AD:AF:DP	0/1:172,14:0.08:186
chr1	168665747	rs78760104	C	CT	17137.73	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:1,432:1.00:433
chr1	168665974	rs524705	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	168670134	.	TGTGTGTGTGTGG	T	255.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.412;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=5.902;MLEAC=1;MLEAF=0.500;MQ=62.61;MQRankSum=0.000;QD=4.92;ReadPosRankSum=1.395;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr1	168670136	.	TGTGTGTGTGG	T	906.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr1	168683476	rs35449613	C	T	14257.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr1	169076212	rs1200128	G	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-2.440;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr1	169080837	rs1200138	C	T	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	169094100	rs968304	T	A	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	169099061	rs1200157	G	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	169099137	rs75112989	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr1	169101257	rs34447553	A	AT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=1.781;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr1	169101269	rs199593766	T	TG	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.843;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr1	169101273	rs1779796	T	G	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=1.404;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr1	169102223	rs61803315	G	C	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:41,96:0.70:137
chr1	169159866	rs7526721	G	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-2.388;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr1	169216412	rs2040445	C	G	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	169272299	rs10919130	A	T	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.373;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr1	169272451	rs10800427	A	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-0.926;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr1	169272453	rs10800428	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-1.022;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr1	169279196	rs34054662	T	TA	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.364;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr1	169293721	rs1140523	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:153,64:0.29:217
chr1	169345704	rs12563090	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:65,25:0.28:90
chr1	169349608	rs3830533	C	CTA	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	169351596	rs3905328	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr1	169391154	rs3820059	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr1	169394226	rs10919168	A	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-1.257;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:51,24:0.32:75
chr1	169435027	rs2678166	C	T	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	169484552	rs3820060	T	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,31:0.38:81
chr1	169492676	rs9332643	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	169493953	rs12131397	A	C	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,73:0.64:114
chr1	169494196	rs2301515	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr1	169498834	rs6009	T	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	169498975	rs6030	T	C	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-2.620;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:217,72:0.25:289
chr1	169499190	rs2157581	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr1	169499951	rs9332620	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=1.469;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	169510233	rs9332607	G	A	4888.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:98,214:0.69:312
chr1	169510380	rs9287090	G	A	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-0.248;QD=3.52;ReadPosRankSum=0.304;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:364,118:0.24:482
chr1	169510524	rs1800594	A	G	1603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.256;QD=4.15;ReadPosRankSum=-1.489;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:284,102:0.26:386
chr1	169511555	rs6032	T	C	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:305,125:0.29:430
chr1	169511734	rs4525	T	C	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.010;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:360,117:0.25:477
chr1	169511755	rs4524	T	C	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=1.449;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:327,101:0.24:428
chr1	169512027	rs6021	T	C	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.003;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:370,113:0.23:483
chr1	169512093	rs6017	A	G	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-1.402;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:397,152:0.28:549
chr1	169512120	rs6016	G	A	2605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.135;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:394,155:0.28:549
chr1	169513436	rs9287092	C	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr1	169515874	rs13306345	T	A	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:134,61:0.31:195
chr1	169515916	rs13306344	G	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr1	169519049	rs6025	T	C	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr1	169525766	rs2239853	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	169525808	rs2239854	G	A	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.499;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	169551682	rs6028	T	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	169560624	rs13306837	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr1	169560727	rs35706397	T	TA,TAA	1218.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.127;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=-2.445;SOR=0.876;set=HC	GT:AD:AF:DP	1/2:6,26,35:0.39,0.52:67
chr1	169564167	rs742127	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	169566313	rs6127	C	T	8619.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	169572545	.	CTGTGTGTGTG	C,CTG	2314.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=65;set=Intersection	GT:AF:DP	1/2:0.37,0.61:38
chr1	169572555	rs201923719	G	C	590.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=8.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=1.176;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr1	169572557	rs199963384	G	C	1334.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.486;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=8.278;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.37;ReadPosRankSum=-0.082;SOR=2.061;set=HC	GT:AD:AF:DP	1/1:5,35:0.88:40
chr1	169572559	.	G	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.342;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr1	169580885	rs6131	C	T	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.695;QD=3.90;ReadPosRankSum=-0.555;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:133,47:0.26:180
chr1	169580972	rs3917730	C	CAT	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.901;QD=6.53;ReadPosRankSum=0.563;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr1	169582317	rs6125	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	169582401	rs3917721	C	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr1	169588354	rs3917696	G	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:109,52:0.32:161
chr1	169672343	rs4987314	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr1	169673838	rs2229569	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr1	169677709	rs1051091	A	G	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:351,162:0.32:513
chr1	169678024	rs4987285	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr1	169679472	rs4987281	G	GCT	1062.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr1	169694918	rs5356	A	G	2105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.618;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:321,136:0.30:457
chr1	169695110	rs3917432	T	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.803;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=1.158;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chr1	169695984	rs3917428	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr1	169696946	rs5368	G	A	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:147,80:0.35:227
chr1	169697444	rs1076637	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chr1	169698825	rs1534904	T	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:175,79:0.31:254
chr1	169699839	rs60632494	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-1.140;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr1	169702705	rs932307	G	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:290,129:0.31:419
chr1	169768080	rs6668114	C	A	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.786;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:106,21:0.17:127
chr1	169773160	rs3766138	T	C	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr1	169773317	rs11590604	G	A	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.545;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:230,118:0.34:348
chr1	169777169	rs34657513	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	169795214	rs57068023	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.159;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.442;QD=1.76;ReadPosRankSum=0.862;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	169795276	rs6682137	A	C	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=8.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.710;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	169800062	rs10489175	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr1	169812765	rs3062271	ATTC	A	263.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	169819605	rs6664099	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-1.107;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:51,25:0.33:76
chr1	169820999	rs116769474	T	A	4447.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:91,200:0.69:291
chr1	169823296	rs112604424	G	GCTTGA	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr1	169823718	rs4656197	T	C	1887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=5.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=1.777;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:234,113:0.33:347
chr1	169831993	rs7525259	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr1	169890933	rs518928	A	G	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	169891056	rs3838393	CT	C	548.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	169923041	rs35674215	G	GT	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr1	169941761	rs511443	A	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	169947146	rs11396984	C	CA	702.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.447;QD=16.34;ReadPosRankSum=-2.473;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:5,38:0.88:43
chr1	169951748	rs638486	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	169951997	rs33943686	C	T	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:62,128:0.67:190
chr1	169952385	rs2057249	G	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	169985796	rs16862933	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	170004722	rs4656732	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:119,63:0.35:182
chr1	170008281	rs74942897	CAT	C	640.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr1	170043482	rs3841721	A	AAACTAGCG	1940.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.805;QD=7.92;ReadPosRankSum=0.450;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:187,58:0.24:245
chr1	170115156	rs550297	G	A	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:68,128:0.65:196
chr1	170135608	rs61825691	C	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:57,28:0.33:85
chr1	170501385	rs7531125	A	C	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	170502517	rs1412892	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	170508755	rs141412003	G	GT	186.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr1	170511604	rs7538037	T	C	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.447;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr1	170521376	rs913257	G	A	7595.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	170633186	rs11286665	AT	A,ATT	458.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/2:0.71,0.24:34
chr1	170633229	.	C	CCTCTCTCTCTCTCTCTCTCT	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.015;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.172;SOR=1.534;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr1	170916646	rs4656817	G	T	1782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-0.101;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:237,108:0.31:345
chr1	170927570	rs374865486	CT	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.885;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:116,51:0.31:167
chr1	170993444	rs3077629	G	GGT	298.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr1	170993566	rs17346397	C	G	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:285,125:0.30:410
chr1	171061990	rs2064074	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr1	171070472	rs12404455	G	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr1	171072862	rs28363536	G	T	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:35,100:0.74:135
chr1	171076966	rs2266782	G	A	4884.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:146,224:0.61:370
chr1	171077165	rs2066529	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,84:0.59:142
chr1	171077198	rs1920149	G	A	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:70,128:0.65:198
chr1	171077502	rs28363550	TC	T	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr1	171083174	rs909530	C	T	5874.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:121,260:0.68:381
chr1	171083242	rs2266780	A	G	8142.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:173,360:0.68:533
chr1	171083537	rs909531	T	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr1	171085314	rs2066528	A	AT	761.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr1	171112490	rs1736565	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:37,87:0.70:124
chr1	171115483	rs72712685	A	G	2781.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:66,121:0.65:187
chr1	171115567	rs11812044	G	A	5899.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:139,278:0.67:417
chr1	171115645	rs11812061	G	T	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:92,181:0.66:273
chr1	171116760	rs7063044	C	T	3154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-2.336;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:71,148:0.68:219
chr1	171118840	rs2272797	G	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr1	171121173	rs7889839	A	G	8256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-0.308;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:173,397:0.70:570
chr1	171121268	rs7886938	G	A	12974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=839;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.46;ReadPosRankSum=0.217;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:255,584:0.70:839
chr1	171121421	rs7887142	G	T	4598.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:97,191:0.66:288
chr1	171121571	rs11406277	T	TG	147.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.157;QD=18.47;ReadPosRankSum=0.157;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	171227216	rs10912675	T	C	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:52,91:0.64:143
chr1	171227487	rs12141555	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr1	171250044	rs742350	C	T	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:106,175:0.62:281
chr1	171251509	rs12091482	G	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	171252287	rs1126692	A	G	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:25,99:0.80:124
chr1	171252449	.	G	GA	442	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=14;HapScore=4;MGOF=33;MMLQ=25;MQ=59.23;NF=3;NR=18;PP=442;QD=21.7142857143;SC=AAATGAAAAAGAAAAAAAAAC;SbPval=0.47;Source=Platypus;TC=25;TCF=3;TCR=22;TR=21;WE=171252457;WS=171252432;set=Platypus	GT:AD:AF:DP	1/0:4,21:0.84:25
chr1	171292017	rs2076322	A	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr1	171301033	rs2294483	C	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.50;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	171301043	rs71103398	G	GA	396.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr1	171303925	rs3820170	C	T	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr1	171306323	rs3737924	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	171306582	rs35591720	C	T	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:75,126:0.63:201
chr1	171311003	rs1042772	A	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:1,252:1.00:253
chr1	171482686	rs2294292	A	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:35,90:0.72:125
chr1	171482699	rs2294293	G	C	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr1	171483717	rs1055417	A	C	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:53,111:0.68:164
chr1	171496895	rs10753126	A	G	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr1	171505524	rs12139715	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr1	171509327	rs760644	G	A	5310.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:75,235:0.76:310
chr1	171511039	rs1687064	C	G	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:130,225:0.63:355
chr1	171514731	rs235468	C	G	4537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=1.151;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:95,210:0.69:305
chr1	171514848	rs144272003	T	TTTTA,TTTTATTTA	1269.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=105;set=Intersection	GT:AF:DP	1/2:0.24,0.70:33
chr1	171519487	rs235470	A	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.179;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr1	171526570	rs1687057	G	A	32256.77	.	AC=1;AF=0.500;AN=2;DB;DP=1981;set=Intersection	GT:AD:AF:DP	0/1:556,1420:0.72:1976
chr1	171527322	rs235482	A	G	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr1	171548868	rs235489	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr1	171553778	rs235495	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr1	171556165	rs235501	G	C	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:110,210:0.66:320
chr1	171558516	rs235503	C	T	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:80,184:0.70:264
chr1	171607702	rs2032555	C	T	1871.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:60,89:0.60:149
chr1	171621525	rs2234926	C	T	2344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-1.298;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:313,131:0.30:444
chr1	171751051	rs2294719	A	G	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:59,105:0.64:164
chr1	171751236	rs2294720	T	C	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:21,71:0.77:92
chr1	171753039	rs2232816	A	G	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:86,184:0.68:270
chr1	171754865	rs732304	A	G	151.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr1	171755170	rs2232818	G	A	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:76,175:0.70:251
chr1	171763522	rs909958	C	A	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:59,106:0.64:165
chr1	171765591	rs2232826	G	A	3445.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:90,152:0.63:242
chr1	171810682	rs114247451	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	172038079	rs12760234	T	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr1	172222629	rs145316116	TCTCTCCTCTCCTCTC	T	3613.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	172356437	rs6688654	A	G	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	172410967	rs1063412	G	A	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	172411496	rs2230471	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	172417781	rs2157451	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	172425529	rs2285170	C	G	15381.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr1	172431210	rs4916261	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	172434309	rs9425328	G	A	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	172434375	rs2901655	G	A	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	172434812	rs2901656	C	T	8733.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr1	172437592	rs1129942	G	A	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	172501643	rs2239816	T	C	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	172502340	rs2285143	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	172502479	rs2285144	T	C	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	172502617	rs45505403	C	T	3167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.356;QD=12.57;ReadPosRankSum=-0.901;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:105,147:0.58:252
chr1	172502727	rs55696309	TA	T	3794.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	172522602	rs1159378	G	A	168.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr1	172547465	rs2285664	A	G	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:114,232:0.67:346
chr1	172554867	rs10752995	T	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	172577864	rs372623434	CT	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.438;QD=2.59;ReadPosRankSum=-1.289;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chr1	172634734	rs2639653	T	C	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	173457017	rs78495657	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr1	173470105	rs12065426	A	G	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-1.807;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:27,40:0.60:67
chr1	173472465	rs72709309	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:88,36:0.29:124
chr1	173490407	rs200616970	TAA	T	1392.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.046;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:30,73:0.71:103
chr1	173490547	.	G	GA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.568;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:128,27:0.17:155
chr1	173490616	rs146332693	CTATATA	C	929.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.06;ReadPosRankSum=-1.070;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr1	173493312	rs10912633	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	173494210	rs6696443	C	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr1	173556699	rs301698	G	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	173606179	rs12065988	A	T	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chr1	173606207	rs12067170	T	A	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr1	173702764	rs45467799	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr1	173724942	rs2273366	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	173794587	rs139694771	CATTATTATT	C	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	173795803	.	CT	C	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.700;QD=1.11;ReadPosRankSum=-1.268;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:138,48:0.26:186
chr1	173797451	rs55878143	T	C	464.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:82,42:0.34:124
chr1	173802433	rs3835254	GA	G	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr1	173808677	rs141298312	G	A	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:77,190:0.71:267
chr1	173819743	rs66665709	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-0.511;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr1	173835211	rs2067079	C	T	3009.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:58,123:0.68:181
chr1	173839240	rs1322774	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr1	173842467	rs9286895	A	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr1	173854659	rs4652283	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr1	173855298	rs1322775	A	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,71:0.66:107
chr1	173876561	rs677	C	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr1	173878832	rs5878	T	C	8390.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:153,369:0.71:522
chr1	173878862	rs5877	T	C	7700.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:138,333:0.71:471
chr1	173907812	rs6703547	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr1	173921301	rs199536039	C	CA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-2.484;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr1	173950205	rs7530661	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	173952539	rs6686083	T	A	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:75,134:0.64:209
chr1	173952836	rs61826774	A	G	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:35,86:0.71:121
chr1	173953860	rs60551050	G	C	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:17,59:0.78:76
chr1	173961807	rs34709821	A	AAC	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.270;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr1	174188231	.	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=1.587;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:100,21:0.17:121
chr1	174210539	.	T	TA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=3.010;QD=1.65;ReadPosRankSum=-1.507;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr1	174219799	rs41265242	G	T	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:74,209:0.74:283
chr1	174221887	rs11351373	GT	G	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr1	174417231	rs7516240	G	A	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	174926860	rs34143059	CT	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.285;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr1	174927388	rs10798329	G	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	174934354	rs142017254	ATGTAAGCAGTGTCTCC	A	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr1	174959108	rs41266060	G	A	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:423,182:0.30:605
chr1	174969271	rs1046439	C	T	10509.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr1	174978933	rs41266068	G	A	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:68,145:0.68:213
chr1	174984069	rs368085151	CT	C	813.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=3.278;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:38,49:0.56:87
chr1	175046488	rs2072033	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.367;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:87,36:0.29:123
chr1	175046789	rs2072032	A	G	1987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.522;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:351,133:0.27:484
chr1	175052828	rs2072031	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr1	175053101	rs2072030	A	T	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:202,77:0.28:279
chr1	175054548	rs1573758	C	T	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.473;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:113,45:0.28:158
chr1	175067580	rs61747978	T	C	4686.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:104,210:0.67:314
chr1	175092674	rs2285215	C	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.292;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:199,84:0.30:283
chr1	175092707	rs10798333	C	T	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.459;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.383;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:226,73:0.24:299
chr1	175092840	rs2072041	T	C	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.192;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:202,64:0.24:266
chr1	175095936	rs7515770	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr1	175096333	rs2072040	A	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr1	175097331	rs10912891	G	A	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	175097349	rs7547567	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:100,38:0.28:138
chr1	175097357	rs2269652	C	G	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:33,88:0.73:121
chr1	175097864	rs12022593	G	A	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:48,148:0.76:196
chr1	175104796	rs4651324	G	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	175105880	rs2072037	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	175105942	rs4650703	G	A	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	175113578	rs10912897	T	C	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	175116046	rs11450833	C	CT	1583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.393;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.753;QD=8.12;ReadPosRankSum=-2.118;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:75,120:0.62:195
chr1	175116252	rs4651335	C	G	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	175129945	rs60195884	TC	T	300.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.505;QD=5.57;ReadPosRankSum=-1.417;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr1	175129946	rs2072035	C	T	978.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=2.566;QD=18.13;ReadPosRankSum=1.488;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:13,41:0.76:54
chr1	175129947	.	TTCTTCTTG	T	282.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.683;QD=4.71;ReadPosRankSum=-1.447;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	175130204	rs1057239	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr1	175293424	rs2213635	T	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr1	175299301	rs2027867	T	C	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.438;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:215,103:0.32:318
chr1	175324518	rs55715761	GCA	G	1171.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=62.73;MQRankSum=8.270;QD=11.60;ReadPosRankSum=-2.436;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:67,34:0.34:101
chr1	175324519	.	CAA	TAA	893	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=62.48;NF=5,16;NR=10,10;PP=877,893;QD=61.8186858157;SC=AGCTGATGAGCAATCCTTGTG;SbPval=0.13;Source=Platypus;TC=61;TCF=33;TCR=28;TR=15,26;WE=175324528;WS=175324509;set=Platypus	GT:AD:AF:DP	0/1:69,26:0.27:95
chr1	175324519	.	CAA	C	893	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=62.48;NF=5,16;NR=10,10;PP=877,893;QD=61.8186858157;SC=AGCTGATGAGCAATCCTTGTG;SbPval=0.13;Source=Platypus;TC=61;TCF=33;TCR=28;TR=15,26;WE=175324528;WS=175324509;set=Platypus	GT:AD:AF:DP	0/1:46,15:0.25:61
chr1	175324521	rs55973835	A	T	1180.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=62.70;MQRankSum=8.318;QD=11.58;ReadPosRankSum=-2.113;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr1	175324651	rs2228359	A	G	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.580;QD=5.22;ReadPosRankSum=-0.968;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:229,109:0.32:338
chr1	175336530	rs6697701	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr1	175336619	rs6697801	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr1	175348723	rs859427	C	T	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	175355128	rs859436	C	G	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	175355152	rs72723450	C	T	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:68,243:0.78:311
chr1	175355391	rs859437	A	G	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	175360690	rs859444	C	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	175362736	rs3752517	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	175365663	rs859446	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:130,62:0.32:192
chr1	175375334	rs859400	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:80,47:0.37:127
chr1	175375469	rs2239819	C	A	2615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.325;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:413,159:0.28:572
chr1	175375683	rs859399	T	C	10693.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	175375802	rs859398	T	C	17797.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr1	175916267	rs6674353	T	C	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr1	175916506	rs34893141	A	AT	344.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.839;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;MQRankSum=0.665;QD=10.77;ReadPosRankSum=0.000;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:5,27:0.84:32
chr1	175937540	rs4534339	C	T	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:58,132:0.69:190
chr1	175951347	rs10798430	T	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,54:0.75:72
chr1	176012807	rs4233165	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr1	176050430	rs56720201	GA	G	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.767;QD=1.77;ReadPosRankSum=0.941;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:76,35:0.32:111
chr1	176103053	rs34010407	TAC	T	1620.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr1	176105710	rs373330844	CA	C	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.226;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr1	176118219	rs3748618	G	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr1	176153658	rs791744	T	C	609.74	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr1	176659463	rs10913241	C	T	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:253,112:0.31:365
chr1	176661229	rs115416265	C	T	6182.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:110,260:0.70:370
chr1	176664842	rs12138725	C	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:148,69:0.32:217
chr1	176665102	rs67178111	ATGTGTGTGTGTGTGTGTGTG	A	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	176671881	.	T	TTG	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.644;QD=2.40;ReadPosRankSum=0.741;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr1	176671912	.	TGAGAGAGA	T	903	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=1;MGOF=19;MMLQ=23;MQ=58.45;NF=1;NR=24;PP=903;QD=36.24;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=0.64;Source=Platypus;TC=49;TCF=2;TCR=47;TR=25;WE=176671927;WS=176671902;set=Platypus	GT:AD:AF:DP	0/1:24,25:0.51:49
chr1	176681165	rs66731142	ATG	A	551.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr1	176734756	rs3737759	C	T	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.337;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:111,43:0.28:154
chr1	176769358	rs10913256	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:75,35:0.32:110
chr1	176809368	rs12118034	C	T	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:314,158:0.33:472
chr1	176845528	rs2076341	C	T	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	176857347	rs2072935	A	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	176863836	rs2281180	G	C	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	176863867	rs2228956	T	C	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr1	176913215	rs35968661	AT	A	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.693;QD=11.49;ReadPosRankSum=-1.135;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr1	176992553	rs172917	A	G	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr1	176992676	rs10798496	C	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	176998368	rs10753142	T	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	177247854	rs3176443	C	G	6568.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:128,291:0.69:419
chr1	177901619	rs7531399	G	A	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:222,116:0.34:338
chr1	177901655	rs3748792	G	A	5849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.06;ReadPosRankSum=1.628;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:363,166:0.31:529
chr1	177901658	rs7554597	C	T	5840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=1.643;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:372,168:0.31:540
chr1	177901713	rs522367	T	C	3340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.774;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=1.054;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:505,205:0.29:710
chr1	177901741	rs684227	A	G	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:422,174:0.29:596
chr1	177902387	rs61745560	C	A	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:256,134:0.34:390
chr1	177902482	rs3813648	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:297,188:0.39:485
chr1	177902725	rs3813649	C	T	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=5.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.733;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:253,80:0.24:333
chr1	177902753	rs591120	G	C	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.346;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:287,89:0.24:376
chr1	177905469	rs7522194	C	A	1363.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:156,78:0.33:234
chr1	177906292	rs61816275	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr1	177913980	rs532842	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	177915474	rs842192	A	C	705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.784;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:88,43:0.33:131
chr1	177915698	rs75650660	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.219;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr1	177916889	.	AA	GG	378	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=2;MGOF=20;MMLQ=28;MQ=58.85;NF=9;NR=0;PP=378;QD=47.9408749847;SC=GGAGGTGAGGAAAGGGACAGG;SbPval=1.0;Source=Platypus;TC=25;TCF=23;TCR=2;TR=9;WE=177916898;WS=177916879;set=Platypus	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.899;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	177917479	rs6695715	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:194,90:0.32:284
chr1	177923440	rs12129817	T	G	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:53,194:0.79:247
chr1	177929987	rs12040910	T	C	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:100,176:0.64:276
chr1	177930096	rs867275	T	C	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:82,180:0.69:262
chr1	177930894	rs945641	C	T	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr1	177935275	rs1415085	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr1	178483231	rs10913563	G	A	11202.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr1	178484834	rs10798611	A	G	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	178489978	rs3813636	T	G	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,115:0.98:117
chr1	178492447	rs7527160	T	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	178514622	rs12568310	C	T	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:266,156:0.37:422
chr1	178646752	rs2773075	A	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	178646884	rs56088671	C	T	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=0.926;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr1	178745798	rs11323887	CT	C	1084.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.738;QD=13.39;ReadPosRankSum=-0.126;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:9,72:0.89:81
chr1	178745947	rs6665037	T	G	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:59,136:0.70:195
chr1	178746031	rs75184054	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr1	178776985	rs6690324	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	178780650	rs12131426	A	G	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	178820159	rs1544124	C	A	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	178848223	rs3766637	A	G	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,50:0.61:82
chr1	178854162	rs6425503	C	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	178858624	rs34280213	A	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-1.718;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	178858711	rs10798635	C	A	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	178858759	rs3753534	G	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	178863266	rs10913637	C	T	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	178871217	rs2275100	G	A	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:40,135:0.77:175
chr1	179023879	rs12735672	T	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr1	179041011	rs3820163	A	G	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	179051300	rs2296377	T	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	179051733	rs78417185	C	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr1	179052002	rs2274228	T	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:125,51:0.29:176
chr1	179052006	rs2274227	G	T	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:51,131:0.72:182
chr1	179054557	rs369392265	CA	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.135;QD=4.10;ReadPosRankSum=-1.372;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:32,28:0.47:60
chr1	179054692	rs912758	T	G	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr1	179066907	rs79003648	T	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr1	179067071	rs10913690	C	A	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:55,89:0.62:144
chr1	179080115	rs34446538	CT	C	813.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.568;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:9,55:0.86:64
chr1	179084080	rs2274230	T	G	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:176,87:0.33:263
chr1	179084268	rs2274229	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr1	179086419	rs56346584	T	TA	846.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.327;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:118,73:0.38:191
chr1	179087934	rs2171959	T	C	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr1	179089213	rs1858551	C	T	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:29,79:0.73:108
chr1	179089475	rs9726961	C	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr1	179089491	rs9728480	A	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr1	179089518	rs9727252	C	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr1	179100710	rs17277358	C	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.637;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.885;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:103,43:0.29:146
chr1	179312102	rs4651024	T	C	2008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.350;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:284,126:0.31:410
chr1	179312249	rs11350945	AT	A	459.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr1	179316687	rs13306729	A	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-1.089;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr1	179317895	rs71751221	ATGTGTGTGTGTGTGTGTGTGTGTG	A	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=8.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-0.554;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr1	179335499	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.490;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	179339334	rs6666358	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr1	179348646	rs141815555	T	TG	430.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr1	179351606	rs4625243	G	C	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr1	179354304	rs7541905	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.963;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr1	179380472	rs5779024	GT	G	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr1	179398875	rs4652383	T	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	179401379	rs11314780	CT	C	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.623;QD=4.67;ReadPosRankSum=-0.836;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr1	179401526	rs7550638	C	G	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.845;QD=3.17;ReadPosRankSum=0.461;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:269,85:0.24:354
chr1	179401559	rs7550656	C	T	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.121;QD=2.84;ReadPosRankSum=-0.410;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:216,63:0.23:279
chr1	179401564	rs10706073	CT	C	450.73	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:157,57:0.27:214
chr1	179401599	rs7550736	C	T	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.053;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:116,30:0.21:146
chr1	179402037	rs199738366	C	CA	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.192;QD=5.45;ReadPosRankSum=0.279;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:46,37:0.45:83
chr1	179414105	rs11577579	A	C	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:90,60:0.40:150
chr1	179418132	rs10913770	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr1	179418181	rs10913771	T	C	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.938;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr1	179437827	rs7514278	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr1	179462149	rs7549194	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	179494612	rs35486954	CTACA	C	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	179494665	rs4620484	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=1.647;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr1	179497359	rs6698201	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.650;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr1	179520254	rs1410591	C	G	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	179520506	rs1410592	G	A	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	179528917	rs12401708	G	A	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	179528942	rs12401711	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	179544898	rs1079292	T	C	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	179545050	rs12406197	C	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr1	179590352	rs61826406	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr1	179599327	rs35061972	T	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-1.147;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr1	179604864	rs4628468	C	T	7643.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:134,351:0.72:485
chr1	179609589	rs16854429	G	T	5926.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:119,266:0.69:385
chr1	179631242	rs35448215	G	A	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.285;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:74,29:0.28:103
chr1	179852074	rs1281378	T	C	7910.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr1	179852552	rs605807	T	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	179858333	rs1300068	C	T	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	179858444	rs2245425	G	A	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	179876988	rs609521	C	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	179877048	.	C	CTTTT	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DP=46;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.07;ReadPosRankSum=1.534;SOR=2.526;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr1	179887125	rs627897	G	A	11322.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	179983665	rs2501607	G	A	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr1	179989742	rs2477120	G	C	7435.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	179992076	rs2477117	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	179993793	rs4622030	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	180010702	rs4652461	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	180022343	rs9425854	T	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr1	180059736	rs67852047	GACATACCT	G	1481.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	180059811	rs10798729	A	C	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	180080115	rs3767202	T	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	180124061	rs10913933	G	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.588;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:52,29:0.36:81
chr1	180124379	rs35481032	T	C	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	180144485	rs10913939	G	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:41,71:0.63:112
chr1	180145088	rs2298206	A	G	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	180148012	rs17855475	G	C	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:43,96:0.69:139
chr1	180155382	rs3216058	AG	A	1340.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	180158668	rs3894210	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	180158927	rs3889149	C	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:19,60:0.76:79
chr1	180159654	rs7521513	C	T	11113.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	180159657	rs1050154	C	T	11015.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.71;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	180159728	rs12091378	C	G	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.981;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:75,26:0.26:101
chr1	180163578	rs67343209	G	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:111,65:0.37:176
chr1	180167440	rs3843273	A	G	2163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.651;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:428,139:0.25:567
chr1	180180669	rs164980	A	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	180240752	rs3845397	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr1	180243524	rs7536561	A	G	7276.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:161,318:0.66:479
chr1	180257692	rs2254465	A	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	180283659	rs2764433	T	C	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	180471054	rs12723183	C	A	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.423;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=7.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=2.888;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:65,40:0.38:105
chr1	180757056	rs3761904	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.389;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr1	180757117	rs34984251	G	GT	806.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	180772414	rs3002117	G	A	71.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.39;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	180803922	rs2271669	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr1	180849494	rs10914123	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr1	180885430	rs10732273	T	C	16447.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr1	180886810	rs3761905	C	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr1	180897521	rs7544551	C	T	17965.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr1	180897569	rs3747958	C	T	9419.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:191,434:0.69:625
chr1	180897792	rs35197779	ATGC	A	2723.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	180905352	rs3795505	C	T	4854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.347;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:794,304:0.28:1098
chr1	180905448	rs3795504	G	T	5005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=1115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.312;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:804,310:0.28:1114
chr1	180905694	rs3795503	C	T	7119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.38;ReadPosRankSum=0.987;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:232,343:0.60:575
chr1	180913597	rs2331995	A	G	15950.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr1	180933601	rs114269908	A	G	5708.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:121,260:0.68:381
chr1	180953853	rs3747957	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:146,77:0.35:223
chr1	181018180	rs2236411	C	G	5868.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:92,270:0.75:362
chr1	181018258	rs3863720	G	A	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-10.251;QD=3.17;ReadPosRankSum=3.096;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:143,41:0.22:184
chr1	181021483	rs35223984	C	T	5819.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:127,268:0.68:395
chr1	181022895	rs2275469	C	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	181024404	rs3747956	G	A	8223.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:166,367:0.69:533
chr1	181058313	rs3747955	G	A	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	181058618	rs1416829	C	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	181058643	rs1361365	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	181548341	rs17443123	A	G	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.822;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:414,141:0.25:555
chr1	181680082	rs17743547	G	A	4531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=0.630;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:75,207:0.73:282
chr1	181684605	rs12407563	A	G	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:52,91:0.64:143
chr1	181686216	rs7540850	T	C	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.026;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:44,86:0.66:130
chr1	181708168	rs73045109	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr1	181714319	.	A	G	2056.77	.	AC=1;AF=0.500;AN=2;DP=162;set=Intersection	GT:AD:AF:DP	0/1:58,102:0.64:160
chr1	181714466	rs375841404	AT	A	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.798;QD=1.27;ReadPosRankSum=-0.393;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:170,53:0.24:223
chr1	181719679	rs704332	C	T	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:67,151:0.69:218
chr1	181726413	rs704330	G	A	117.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr1	181727030	rs12564606	A	T	3933.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:76,172:0.69:248
chr1	181740419	.	TCTC	T	7287.73	.	AC=1;AF=0.500;AN=2;DP=281;set=Intersection	GT:AD:AF:DP	0/1:84,181:0.68:265
chr1	181740576	rs373521307	T	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,68:0.64:107
chr1	181752769	rs144664284	A	AT	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.024;QD=6.86;ReadPosRankSum=-0.112;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:45,49:0.52:94
chr1	181752784	.	G	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.699;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.547;QD=3.07;ReadPosRankSum=0.860;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:87,28:0.24:115
chr1	181752923	rs36163765	AAGCTT	A	3418.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:68,89:0.57:157
chr1	181759458	rs77370814	C	G	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.01;ReadPosRankSum=-0.352;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,43:0.78:55
chr1	182419540	rs138137377	G	A	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr1	182427355	rs2765278	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:81,35:0.30:116
chr1	182429295	rs10572829	CTG	C	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr1	182443462	rs649437	T	C	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:114,254:0.69:368
chr1	182491107	rs607269	A	C	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.07;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	182491107	.	AGTGT	CGTGC,CGTGT	295	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=17,29;NR=3,7;PP=295,246;QD=17.4233937431;SC=CTTATAATATAGTGTTCTCCA;SbPval=0.76;Source=Platypus;TC=36;TCF=29;TCR=7;TR=20,36;WE=182491119;WS=182491097;set=Platypus	GT:AF:DP	0/1:0.56:36
chr1	182491111	rs12142736	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-1.999;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr1	182501933	rs266534	C	A	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.821;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:321,101:0.24:422
chr1	182502033	rs266535	G	T	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	182509269	rs266531	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	182509292	rs3856115	A	G	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.382;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:108,35:0.24:143
chr1	182509617	rs3911280	C	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr1	182517357	rs6657620	G	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr1	182517642	rs10911094	C	A	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:112,228:0.67:340
chr1	182522552	rs266544	C	T	3511.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:56,158:0.74:214
chr1	182544815	rs11807829	T	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr1	182549019	rs533259	A	G	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	182551337	rs627928	A	C	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:80,172:0.68:252
chr1	182554557	rs486907	C	T	6357.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:174,292:0.63:466
chr1	182569626	rs1144566	T	C	8475.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	182571003	rs610367	C	T	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.067;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr1	182571277	rs569790	C	T	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.523;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:170,64:0.27:234
chr1	182573227	rs509476	T	C	9808.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr1	182778367	rs971040	G	A	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	182784022	rs2275171	T	C	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:193,104:0.35:297
chr1	182812410	rs376728056	CT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.794;QD=4.95;ReadPosRankSum=-1.979;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	182850727	rs6677840	T	C	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	182854017	rs3130492	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr1	182920665	.	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=0.091;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	182993025	rs10911194	C	T	4366.77	.	AC=1;AF=0.500;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	0/1:518,256:0.33:774
chr1	183072590	rs2296288	T	C	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.731;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:222,95:0.30:317
chr1	183077296	rs3835273	A	AG	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr1	183077615	rs3765521	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.577;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-1.115;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	183077618	rs3765522	C	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-0.815;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr1	183079509	rs2296291	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr1	183079853	rs6672093	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.142;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr1	183084607	rs3736888	AC	GA	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.804;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.50;ReadPosRankSum=1.475;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:98,31:0.24:129
chr1	183085611	rs10689020	C	CA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.555;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr1	183085696	rs6424888	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:147,68:0.32:215
chr1	183085755	rs20563	A	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:223,108:0.33:331
chr1	183086757	rs2296292	A	C	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.604;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:99,52:0.34:151
chr1	183093875	rs20557	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.177;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:191,62:0.25:253
chr1	183094547	rs20558	T	C	1159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.565;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:181,72:0.28:253
chr1	183094802	rs10797850	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	183095185	rs55856623	TAA	T	506.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.440;QD=4.92;ReadPosRankSum=1.133;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:74,29:0.28:103
chr1	183095234	rs1886501	A	G	1143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.392;QD=6.25;ReadPosRankSum=0.176;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:120,63:0.34:183
chr1	183095477	rs2296293	G	A	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.261;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:81,26:0.24:107
chr1	183096253	rs3066017	T	TATA	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:17,3:0.15:20
chr1	183096634	rs1413390	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	183096668	rs1413389	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	183097956	rs34133998	G	GTTA	1611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.391;QD=12.12;ReadPosRankSum=-2.054;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:87,46:0.35:133
chr1	183098001	rs10797851	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.428;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.188;SOR=2.019;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr1	183099701	rs2296300	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr1	183100555	rs2333620	T	C	1498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-1.221;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:182,57:0.24:239
chr1	183100562	.	G	GT	1332.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=5.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.639;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:151,43:0.22:194
chr1	183100563	.	G	GTGTGTGTGTGT	1407.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.348;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:138,46:0.25:184
chr1	183100596	rs2333619	A	G	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=-0.192;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr1	183100598	rs4047797	T	G	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.337;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-0.280;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr1	183101427	rs148796825	AAAT	A	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=0.820;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	183101444	rs12071514	A	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-0.052;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr1	183101451	rs12066735	T	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=-0.055;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr1	183101471	rs12061219	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr1	183101686	rs12095664	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:124,51:0.29:175
chr1	183104013	rs2296299	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:107,43:0.29:150
chr1	183104340	rs35182436	AT	A	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.188;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:106,69:0.39:175
chr1	183105399	rs2296296	C	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.193;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr1	183105534	rs20560	T	C	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-1.051;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:281,127:0.31:408
chr1	183105705	rs20561	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:127,60:0.32:187
chr1	183105770	rs141723674	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	183106739	rs10797854	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr1	183155482	rs684527	C	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr1	183155700	rs6678888	C	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:105,67:0.39:172
chr1	183155715	rs60707856	CT	C	1700.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:90,50:0.36:140
chr1	183155717	rs61418038	C	A	1709.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:87,51:0.37:138
chr1	183155778	rs6703054	A	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr1	183176970	rs11480551	G	GT	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.638;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:96,53:0.36:149
chr1	183177218	rs647347	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,29:0.38:77
chr1	183205523	rs34154823	CAA	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-1.915;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	183253213	rs607332	G	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=0.479;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr1	183253959	rs603850	T	G	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:38,116:0.75:154
chr1	183471295	rs789193	G	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	183486859	rs789169	G	A	12193.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr1	183516100	rs699246	G	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	183516440	rs2702182	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	183525452	rs699244	T	G	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	183532580	rs17849502	G	T	4294.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:106,193:0.65:299
chr1	183534935	rs2296164	C	T	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr1	183542323	rs17849501	C	T	2494.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:24,100:0.81:124
chr1	183542387	rs2274064	T	C	6320.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	183546641	rs55651413	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr1	183617266	rs17436878	C	G	6213.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:116,276:0.70:392
chr1	183711483	rs3820689	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	183775704	rs368701909	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.028;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr1	183816683	rs10494570	G	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.019;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr1	183852914	rs10797919	G	C	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:38,101:0.73:139
chr1	183867085	rs3814330	C	T	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:23,70:0.75:93
chr1	183871637	rs4604659	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr1	183873898	rs10797920	A	G	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr1	183876182	rs11591089	C	T	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.356;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:392,134:0.25:526
chr1	183876287	rs16861715	T	C	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr1	183891159	rs11803613	C	G	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	183895178	rs4328036	G	A	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr1	183942950	rs2296714	C	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	183944089	rs2077202	A	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	183944444	rs2378795	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	183947757	rs3833521	G	GA	1125.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr1	184006128	rs74767794	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.442;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr1	184006549	rs114661926	C	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr1	184020945	rs2274432	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.743;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:121,36:0.23:157
chr1	184023529	rs1046934	A	C	1543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.003;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:217,99:0.31:316
chr1	184662181	rs1061508	C	T	4017.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:76,174:0.70:250
chr1	184663537	rs9425343	A	C	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:70,112:0.62:182
chr1	184663581	rs9425634	T	C	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr1	184663643	rs34236444	TA	T	496.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr1	184675814	rs1062994	G	A	6417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=-0.945;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:136,294:0.68:430
chr1	184677464	rs3736757	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:45,155:0.78:200
chr1	184681081	rs7525074	A	G	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr1	184681802	rs4651230	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	184688237	rs111917956	CGT	C	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.202;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr1	184692999	rs71101940	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.480;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr1	184695571	rs10752941	C	T	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:17,80:0.82:97
chr1	184706212	rs10711907	GT	G	1704.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr1	184718750	rs35957626	GAAA	G	888.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=0.755;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:11,34:0.76:45
chr1	184760001	rs570441	T	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,79:0.69:115
chr1	184763999	rs79046430	A	G	4926.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:65,213:0.77:278
chr1	184764681	rs35545276	G	A	5645.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:122,252:0.67:374
chr1	184764824	rs35704242	C	T	5367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=0.637;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:103,241:0.70:344
chr1	184765072	rs28927681	A	G	5900.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:166,275:0.62:441
chr1	184777467	rs338566	A	T	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr1	184801065	rs487675	T	C	10672.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr1	184868251	rs3753575	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:109,58:0.35:167
chr1	185061018	rs12408074	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr1	185094277	rs7523448	G	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	185119794	rs1544051	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	185120927	.	G	GA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.498;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:58,16:0.22:74
chr1	185135745	rs950327	A	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.110;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:63,37:0.37:100
chr1	185137454	rs58809696	T	TAAATGATAGAC	614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=2.945;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr1	185137461	rs56166198	A	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=3.290;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:73,17:0.19:90
chr1	185137464	.	T	TAA	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=2.811;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:69,19:0.22:88
chr1	185143721	rs10489579	A	G	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:209,103:0.33:312
chr1	185144347	rs6696591	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=7.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.884;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr1	185153545	rs76544683	G	GT	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:42,9:0.18:51
chr1	185171869	rs6698109	A	G	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:150,88:0.37:238
chr1	185240427	rs78745917	C	T	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=0.458;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:45,51:0.53:96
chr1	185240474	rs12041704	A	G	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=0.202;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:69,42:0.38:111
chr1	185259731	rs2378909	A	G	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.609;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr1	185267114	rs10174	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr1	185270777	rs141708498	C	CT	5110.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:73,158:0.68:231
chr1	185833565	rs7556537	A	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr1	185834851	rs57584779	C	CT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.349;QD=3.14;ReadPosRankSum=-0.714;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:69,33:0.32:102
chr1	185891409	rs55890842	G	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.562;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:132,42:0.24:174
chr1	185950325	rs28535260	C	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr1	185958904	.	A	AT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.147;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr1	185984517	rs6665753	T	C	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:92,204:0.69:296
chr1	185988567	rs11290212	CT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.640;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr1	186022032	rs10911808	T	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,10:0.24:41
chr1	186026474	rs12129650	T	C	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=0.465;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:327,106:0.24:433
chr1	186030902	rs10737266	G	T	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.046;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.740;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr1	186031041	rs7522627	C	T	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.560;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:206,74:0.26:280
chr1	186039006	rs761905	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr1	186050417	rs10798035	A	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:176,83:0.32:259
chr1	186055371	rs6425017	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:109,55:0.34:164
chr1	186057181	rs10911816	T	C	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:292,127:0.30:419
chr1	186064760	rs1022671	A	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.083;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.269;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr1	186077463	rs1555495	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr1	186081918	rs7555520	C	T	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=5.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.242;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:239,76:0.24:315
chr1	186086578	rs10157742	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.834;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:151,59:0.28:210
chr1	186089072	rs2891230	G	A	2051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=5.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.554;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:268,115:0.30:383
chr1	186089112	rs2383434	T	C	1616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.370;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:254,102:0.29:356
chr1	186089363	rs10752962	C	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr1	186092076	rs2057388	A	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=-0.012;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr1	186101539	rs10911825	A	G	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.048;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:142,48:0.25:190
chr1	186113931	rs3737941	T	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr1	186114443	rs5779272	CT	C	660.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:104,53:0.34:157
chr1	186141301	rs4651302	G	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.917;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:200,59:0.23:259
chr1	186157184	rs1008840	T	G	9248.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:190,430:0.69:620
chr1	186265948	rs1293987	T	A	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr1	186274133	rs6425024	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-1.035;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	186275760	rs16825150	G	A	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:372,190:0.34:562
chr1	186277088	rs68069719	G	C	32550.77	.	AC=2;AF=1.00;AN=2;DB;DP=1209;set=Intersection	GT:AD:AF:DP	1/1:0,1204:1.00:1204
chr1	186277527	rs75928540	T	C	10348.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:213,457:0.68:670
chr1	186286782	rs34585917	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.519;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr1	186295021	rs76057663	A	G	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:210,105:0.33:315
chr1	186313249	rs2950829	A	G	6797.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	186313293	rs76557279	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.006;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.964;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:85,28:0.25:113
chr1	186316488	rs3753565	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:285,131:0.31:416
chr1	186319580	rs6667940	C	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	186329869	rs2026187	C	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:76,35:0.32:111
chr1	186330643	rs10494586	T	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.194;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.468;QD=4.80;ReadPosRankSum=1.347;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr1	186330700	rs36117514	A	AG	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.191;QD=4.89;ReadPosRankSum=-0.948;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:122,49:0.29:171
chr1	186344876	rs3831933	A	AG	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.267;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.180;QD=1.52;ReadPosRankSum=-2.772;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr1	186357523	rs1290390	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	186649221	rs2745557	A	G	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.070;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr1	186901738	rs12720584	TTCTTCTTTTAAAA	T	1809.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	186919732	rs4650709	A	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=2.463;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	186919993	rs969357	G	A	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	186925168	rs5007825	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	186925194	rs5007824	T	C	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	186925552	rs2307199	T	C	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr1	186946912	rs2307198	G	A	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	187610538	rs10157977	C	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	187610698	rs10157987	C	A	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	187610777	rs61822202	C	G	11460.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	187610852	rs10159182	A	C	14206.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr1	192128139	.	T	G	102	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5001;HP=2;HapScore=2;MGOF=21;MMLQ=19;MQ=60.0;NF=11;NR=0;PP=102;QD=12.4337465952;SC=TGAAATATAATCTCAAATACT;SbPval=1.0;Source=Platypus;TC=18;TCF=18;TCR=0;TR=11;WE=192128147;WS=192128138;set=Platypus	GT:AD:AF:DP	1/0:7,11:0.61:18
chr1	192128183	rs4454527	G	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	192129370	rs4329489	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	192544795	rs2984920	A	G	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	192545099	rs7535818	G	A	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	192548229	rs2816307	G	T	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:50,129:0.72:179
chr1	192548543	rs1323291	T	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr1	192548559	rs2816308	G	C	1609.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr1	192778159	rs12130714	A	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr1	192779227	rs2746073	T	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	192780088	rs5779653	GCT	G	5314.73	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:325,168:0.34:493
chr1	192780337	rs10607546	CAA	C	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr1	192780498	rs17647363	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr1	193029046	rs41265201	C	A	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.957;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.550;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:301,101:0.25:402
chr1	193039658	.	C	CT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=2.124;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.920;QD=0.86;ReadPosRankSum=0.252;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr1	193051685	rs2275444	G	A	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	193054154	rs10921309	G	A	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	193074371	rs10801175	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	193074651	rs10921310	T	A	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	193090865	rs10737621	C	A	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.111;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	193094375	rs4466634	T	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	193104827	rs10921318	G	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	193202001	rs10921328	C	G	548.81	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr1	193205272	rs3738244	T	A	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	196227526	rs977157	A	G	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	196242764	rs558895	T	G	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr1	196251522	rs2477357	T	C	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	196254970	rs2477360	C	T	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	196295914	rs41304558	C	G	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-2.273;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:60,24:0.29:84
chr1	196303297	rs35078847	TAG	T	478.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.952;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.764;QD=23.94;ReadPosRankSum=1.454;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	196311513	rs6658788	G	A	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	196398619	rs1538684	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	196398974	rs12121250	T	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	196461513	rs4607811	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	196654324	rs1061147	A	C	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:428,184:0.30:612
chr1	196658497	rs482934	G	T	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=0.492;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	196658905	rs12029785	G	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	196659237	rs1061170	C	T	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:155,66:0.30:221
chr1	196682947	rs2274700	G	A	2100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.532;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.181;QD=4.93;ReadPosRankSum=0.930;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:300,126:0.30:426
chr1	196684625	rs203674	G	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	196705926	rs375046	C	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.412;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr1	196874356	rs10801578	G	T	8058.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr1	196887181	rs1971579	T	G	63.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr1	196887274	rs3795341	G	A	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=0.254;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr1	196887457	rs10494745	G	A	6896.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:125,301:0.71:426
chr1	196920178	rs3828032	C	T	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.523;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:168,66:0.28:234
chr1	196926956	rs3748556	C	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.138;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chr1	196926973	rs3748555	C	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:123,48:0.28:171
chr1	196946869	rs3748557	T	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=4.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=3.672;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:179,60:0.25:239
chr1	196952268	rs45489701	C	T	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.417;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:291,109:0.27:400
chr1	196965420	.	T	C	410.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr1	197008597	rs5990	A	C	1066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=-0.210;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:14,48:0.77:62
chr1	197009798	rs5998	A	G	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.684;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:45,85:0.65:130
chr1	197026672	rs1759009	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	197029345	rs1332661	G	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=-0.842;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr1	197030201	rs5997	T	C	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr1	197030237	rs17549277	CT	C	901.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.753;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.311;QD=15.28;ReadPosRankSum=-1.830;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr1	197031021	rs6003	C	T	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr1	197053373	rs12677	G	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	197053561	rs200839523	T	TA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.480;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:37,16:0.30:53
chr1	197055925	rs10754213	T	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	197059878	rs4915315	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	197059892	rs10754214	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	197059928	rs4915316	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	197063352	rs41304071	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-2.622;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:138,33:0.19:171
chr1	197070442	rs3762271	G	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.532;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr1	197070697	rs41310927	T	C	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.318;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:109,43:0.28:152
chr1	197070707	rs41308365	G	A	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=-0.422;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:116,46:0.28:162
chr1	197070815	rs1412640	T	C	7151.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	197070901	rs964201	A	G	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr1	197072420	rs41310925	T	C	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:150,87:0.37:237
chr1	197073932	rs2878749	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.201;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:81,39:0.33:120
chr1	197091537	rs4915337	A	T	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	197091808	rs61819088	T	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr1	197094030	rs6676084	C	T	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr1	197097891	rs150344996	AAAAT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-0.588;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	197098326	rs33987824	G	A	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-0.155;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:65,84:0.56:149
chr1	197101621	rs3737111	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr1	197104149	rs35659894	TA	T	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	197109042	rs1332663	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	197112533	rs6677082	G	A	6492.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	197113073	rs1571964	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	197141243	rs6428389	A	C	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	197144097	rs75233406	C	G	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.692;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:276,106:0.28:382
chr1	197147471	rs61819118	A	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	197316435	rs1337167	T	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	197325908	rs2786098	T	G	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	197390368	rs3902057	A	G	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	197398086	rs7534863	A	G	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.242;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:87,33:0.28:120
chr1	197407942	rs980371	A	G	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	197446702	rs1135810	G	T	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.955;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:135,54:0.29:189
chr1	197480927	rs12142127	C	T	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.491;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:181,37:0.17:218
chr1	197482167	rs2013617	C	G	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	197510025	rs3902061	G	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	197510299	rs3850628	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	197515253	rs11276673	ATGTTCAG	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	197515715	rs4303099	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	197515777	rs4316386	A	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	197515981	rs10922249	T	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr1	197576307	rs11411505	A	AT	1298.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	197611925	rs7523384	G	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.500;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:277,85:0.23:362
chr1	197704717	rs17641524	C	T	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.859;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:298,97:0.25:395
chr1	197741951	rs2477067	C	A	2591.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:3,115:0.97:118
chr1	197742171	rs2488396	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	197744098	rs117405403	G	C	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	197871771	.	G	A	903.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr1	197874949	rs2270763	T	C	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	197876533	rs1546244	C	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	197890422	rs12122995	C	G	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,235:1.00:236
chr1	197890802	rs13376365	T	C	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=2.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-2.024;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:368,125:0.25:493
chr1	197898023	rs10664707	C	CA,CAA	707.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.809;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.550;SOR=0.638;set=HC	GT:AD:AF:DP	1/2:5,15,23:0.35,0.53:43
chr1	198498325	rs139314248	AAT	A	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.399;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:87,22:0.20:109
chr1	198698349	rs190387811	A	G	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=-0.332;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr1	198701289	rs1932433	T	C	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:9,3:0.25:12
chr1	198711170	.	C	CA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=4.199;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.45;ReadPosRankSum=1.587;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr1	198717218	rs71286550	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.444;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	200014762	rs2817008	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:55,23:0.29:78
chr1	200014790	rs2817009	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	200017586	rs2821368	C	G	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.357;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:395,139:0.26:534
chr1	200080462	rs111949351	A	AT	365.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-0.302;SOR=1.798;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	200080463	rs3828110	C	T	254.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=6.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.372;SOR=0.181;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr1	200080464	rs202167972	C	A	368.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.214;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,27:0.55:49
chr1	200089872	rs10494808	C	T	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	200090120	rs3762398	G	A	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	200143064	rs71770449	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.144;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr1	200143281	rs1060060	C	T	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:172,82:0.32:254
chr1	200143442	rs1060061	T	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	200182654	rs6427805	T	C	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	200311868	rs2790109	C	G	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr1	200312546	rs61101900	CA	C	222.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=1.182;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	200342046	rs6677545	A	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	200544650	rs142403729	TACAC	T,TAC	6036.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.178;QD=29.74;ReadPosRankSum=-1.191;SOR=0.642;set=HC	GT:AD:AF:DP	1/2:2,25,176:0.12,0.87:203
chr1	200550243	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.114;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	200569392	rs2809357	C	A	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.536;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:194,65:0.25:259
chr1	200574959	rs2808238	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr1	200575744	rs10577607	CTAAA	C	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.551;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:55,24:0.30:79
chr1	200575794	rs2794410	A	G	916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=6.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.115;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:135,54:0.29:189
chr1	200578093	rs2794409	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=1.103;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr1	200583380	rs2808241	T	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=-0.375;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr1	200594005	rs2808257	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:38,92:0.71:130
chr1	200594240	rs2809350	G	A	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	200610525	rs5780032	TA	T	189.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=0.938;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr1	200618238	rs6665604	T	C	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	200619530	rs2809365	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	200776641	rs7552353	C	T	5006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=1.229;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:107,227:0.68:334
chr1	200801935	rs41306231	A	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=0.571;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:243,82:0.25:325
chr1	200802045	rs78225055	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr1	200811313	rs149419826	A	AT	290.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr1	200816521	rs2172666	G	T	1583.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.954;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.96;ReadPosRankSum=0.061;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr1	200816643	rs115765157	C	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr1	200816658	rs2131834	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	200824978	rs61825260	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=2.025;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr1	200824980	rs2029752	CC	TT	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=2.025;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr1	200843307	rs34290042	T	TCCCG	2444.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:27,61:0.69:88
chr1	200867552	rs2271017	C	T	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=1.257;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:55,113:0.67:168
chr1	200868493	rs72225687	GTGTGTGTGCA	G	334.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:80,24:0.23:104
chr1	200876788	.	T	TA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.003;QD=5.40;ReadPosRankSum=-0.593;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr1	200877850	rs41299637	T	G	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.088;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:158,65:0.29:223
chr1	200880702	rs61740234	C	T	13953.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:240,630:0.72:870
chr1	200880978	rs296520	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr1	200881392	rs10800746	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	200943793	rs71991687	CAGGA	C	9730.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	200944840	rs296563	T	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr1	200956404	.	A	AT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.563;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-0.415;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr1	200957697	rs12142704	A	G	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.927;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=0.458;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:73,38:0.34:111
chr1	200960307	rs2297909	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr1	200965601	rs10920088	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.300;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr1	200967490	rs10920089	A	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr1	201009556	rs1546416	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:213,90:0.30:303
chr1	201009897	rs6427875	T	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	201010525	.	C	A	745.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,30:0.77:39
chr1	201010862	rs6675915	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=10.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-0.610;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr1	201012597	rs41267497	G	A	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.584;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:221,84:0.28:305
chr1	201016296	rs3850625	G	A	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:104,200:0.66:304
chr1	201020105	rs6702590	A	G	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:30,91:0.75:121
chr1	201020360	rs12138260	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:92,42:0.31:134
chr1	201031307	rs2297903	A	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	201035488	rs41267503	A	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:194,85:0.30:279
chr1	201038650	rs139956524	C	T	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:87,198:0.69:285
chr1	201038687	rs7415038	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:213,86:0.29:299
chr1	201042618	rs9333652	G	A	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	201044748	rs1998721	A	G	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	201046025	rs7549030	G	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:176,77:0.30:253
chr1	201047062	rs4915476	G	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:240,112:0.32:352
chr1	201047075	rs4915477	A	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:269,137:0.34:406
chr1	201060865	rs2296383	G	A	4071.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:125,190:0.60:315
chr1	201079458	rs1325309	T	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:173,73:0.30:246
chr1	201081283	rs112984935	AC	A	972.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr1	201112981	rs8158	A	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	201113118	rs3738266	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	201115822	rs3752978	A	G	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:170,91:0.35:261
chr1	201116018	rs3752979	C	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	201120730	rs2068152	C	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	201122784	rs6684980	C	T	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	201122947	rs1925361	T	G	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	201162411	rs12089471	G	A	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:110,53:0.33:163
chr1	201162643	rs10800761	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	201163191	rs1107128	G	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr1	201166281	rs7533096	C	T	4195.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:86,187:0.68:273
chr1	201166383	rs4915221	G	A	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:123,229:0.65:352
chr1	201166435	rs11589317	T	C	6964.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	201169601	rs35998091	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr1	201170772	rs10157730	A	G	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr1	201170824	rs10158976	C	G	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	201171007	rs10800762	T	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	201173104	rs832160	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	201174215	rs11584104	C	A	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.355;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:238,79:0.25:317
chr1	201175227	rs832156	C	A	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.158;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:115,48:0.29:163
chr1	201175274	rs9651057	A	G	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:58,124:0.68:182
chr1	201175715	rs1341631	G	T	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-2.569;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:183,73:0.29:256
chr1	201175768	rs116753369	G	C	961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-1.751;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:149,58:0.28:207
chr1	201176018	rs10753895	A	G	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.391;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr1	201176711	rs12568690	G	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr1	201178904	.	A	G	1398	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=26;MQ=47.43;NF=53;NR=32;PP=1398;QD=16.8561319123;SC=GGGGGTTCTGAAGAAATGGGG;SbPval=0.11;Source=Platypus;TC=243;TCF=119;TCR=124;TR=85;WE=201178912;WS=201178894;set=Platypus	GT:AD:AF:DP	0/1:158,85:0.35:243
chr1	201178924	.	AAG	GAA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=1;MGOF=25;MMLQ=25;MQ=45.85;NF=72;NR=42;PP=2944;QD=20;SC=GTCAGTGAATAAGGCAGGTTA;SbPval=0.93;Source=Platypus;TC=243;TCF=124;TCR=119;TR=114;WE=201178934;WS=201178914;set=Platypus	GT:AD:AF:DP	0/1:129,114:0.47:243
chr1	201181223	rs12070919	A	G	14454.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr1	201183424	rs41304263	G	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:158,67:0.30:225
chr1	201184097	rs4915496	G	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:58,170:0.75:228
chr1	201184878	rs61743921	C	A	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.615;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:311,106:0.25:417
chr1	201186661	.	C	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.125;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:118,35:0.23:153
chr1	201187764	rs10920144	T	C	9319.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	201187828	rs3738268	T	C	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr1	201187954	rs6667020	C	T	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	201190732	rs3738269	G	A	5390.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:100,242:0.71:342
chr1	201193668	rs6687494	G	T	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	201195119	rs3738270	C	T	12561.77	.	AC=1;AF=0.500;AN=2;DB;DP=892;set=Intersection	GT:AD:AF:DP	0/1:316,574:0.64:890
chr1	201197331	rs3753971	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr1	201197358	rs3753972	G	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:27,65:0.71:92
chr1	201197471	rs3753973	T	C	8730.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:154,393:0.72:547
chr1	201282167	rs1772860	C	G	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	201285759	rs1779297	A	G	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	201285909	rs1534051	A	G	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	201286614	rs11336457	GA	G	2668.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:5,135:0.96:140
chr1	201286628	rs1772823	C	G	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr1	201288007	rs1794868	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	201288898	rs1722759	A	C	6635.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr1	201290968	rs1779292	T	G	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	201291066	rs2071960	C	T	12052.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr1	201292110	rs1779288	T	C	8387.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	201293512	rs36076398	TG	T	2852.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	201293970	rs1620046	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	201293985	rs854505	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	201294910	rs61818256	C	T	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.562;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:409,106:0.21:515
chr1	201331554	rs1104859	T	G	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	201331664	rs2365652	C	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	201334382	rs3729547	G	A	8042.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	201335899	rs1573230	C	T	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr1	201336984	rs3729843	C	T	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	201337170	rs3729842	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	201338553	rs10800776	T	C	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	201338586	rs10920183	A	G	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	201338896	rs10920184	T	C	9995.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr1	201339043	rs12049476	C	T	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	201341175	rs45533739	CAGAAG	C	10030.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	201341341	rs868407	C	T	5722.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	201353827	rs10920189	G	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	201356428	rs4915230	C	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	201383616	rs2026593	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	201383643	rs2026594	A	C	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	201434740	rs1053592	G	A	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr1	201453289	rs576697	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	201687406	rs11588142	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:93,37:0.28:130
chr1	201687451	rs11576721	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:160,68:0.30:228
chr1	201688515	rs9662744	T	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr1	201688832	rs67974334	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr1	201749520	rs529581	G	C	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:215,85:0.28:300
chr1	201752429	rs527725	A	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr1	201754410	.	CTT	C,CT	1004.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=7.691;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.644;QD=12.56;ReadPosRankSum=-1.221;SOR=1.322;set=HC	GT:AD:AF:DP	1/2:10,38,32:0.47,0.40:80
chr1	201755469	rs12563363	C	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr1	201763184	rs564440	T	C	3031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=-0.102;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:39,132:0.77:171
chr1	201763499	rs567185	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr1	201772863	rs34105833	T	TG	5416.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	201773707	.	TA	T	517.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=2.081;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:59,66:0.53:125
chr1	201827919	rs72742073	C	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,34:0.30:112
chr1	201837934	rs34353605	CGT	C	4320.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:19,171:0.90:190
chr1	201837956	.	TGA	T	1380	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=28;MQ=60.01;NF=14;NR=95;PP=1380;QD=12.7064220183;SC=TGTGTGTGTGTGAGAGAGATC;SbPval=0.73;Source=Platypus;TC=137;TCF=21;TCR=116;TR=109;WE=201837965;WS=201837946;set=Platypus	GT:AD:AF:DP	0/1:28,109:0.80:137
chr1	201840059	rs150361248	GTTATT	G	3205.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	201840464	rs2644124	T	C	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr1	201840537	rs12756688	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	201844128	rs2678203	G	A	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr1	201858887	rs7539696	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr1	201860626	rs2250377	A	G	18171.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr1	201865763	rs8028	A	G	8465.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	201868333	rs3738290	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr1	201938482	rs58623305	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	201952294	rs73074403	C	G	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr1	201952310	rs112370844	T	G	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr1	201952574	rs4950806	T	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr1	201952755	rs4950807	T	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:32,75:0.70:107
chr1	201958312	rs35164608	C	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr1	201966774	rs10920300	T	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr1	201969082	rs1130790	G	A	2565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-2.576;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:60,121:0.67:181
chr1	201970562	rs4332408	T	C	9298.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr1	201970748	rs4131469	G	A	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,102:0.67:153
chr1	201980119	rs2819361	C	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.555;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	201983242	rs2819365	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr1	202092046	rs3795593	C	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	202092360	rs3795595	G	A	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr1	202092415	rs3795596	A	G	14008.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr1	202092580	rs7516762	T	C	10400.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	202096815	rs3820380	G	A	9604.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr1	202103802	rs4342901	G	A	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr1	202107422	rs140055888	AACACAC	A,AAC	2015.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=79;set=Intersection	GT:AF:DP	1/2:0.73,0.27:55
chr1	202113835	rs4989100	T	G	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	202119308	rs7551879	T	C	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.516;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr1	202121643	rs10920337	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:52,35:0.40:87
chr1	202122783	rs11590076	C	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr1	202129826	rs4309039	T	C	4735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-2.141;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:527,272:0.34:799
chr1	202130754	rs3934648	T	C	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:74,134:0.64:208
chr1	202152859	rs2993441	A	C	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr1	202155331	.	C	CTGCCCCCTTGCCCCCT	728.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr1	202155543	rs2993432	A	C	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:236,100:0.30:336
chr1	202156135	rs139095833	C	CCCTCGCT	1005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=0.626;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:62,27:0.30:89
chr1	202156154	.	G	T	1494.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,69:0.61:114
chr1	202156482	rs3010088	G	A	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.526;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:246,74:0.23:320
chr1	202156618	.	G	C	6063.77	.	AC=1;AF=0.500;AN=2;DP=368;set=Intersection	GT:AD:AF:DP	0/1:104,264:0.72:368
chr1	202156628	rs3010089	A	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:227,96:0.30:323
chr1	202163063	rs2361431	T	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr1	202163364	rs2077598	C	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr1	202163516	rs1812761	C	A	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr1	202163621	rs3120747	G	A	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-1.663;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:195,84:0.30:279
chr1	202183308	rs10920362	C	T	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr1	202194441	rs3010067	G	C	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr1	202196931	rs1452070	G	A	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	202197161	rs3795598	C	T	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr1	202304868	rs14451	T	C	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr1	202318316	rs930734	A	C	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-1.480;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:130,69:0.35:199
chr1	202386075	rs2843413	T	C	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr1	202457784	rs3820374	T	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr1	202531741	rs2249811	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=1.333;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:79,20:0.20:99
chr1	202536848	rs2292489	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-3.146;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr1	202565747	rs138552846	AAAAC	A	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr1	202565948	rs504261	G	A	6844.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:87,303:0.78:390
chr1	202572105	rs55968420	GCC	G	7178.73	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:312,215:0.41:527
chr1	202701185	rs201909287	AC	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	202703053	rs4310498	G	A	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	202705455	rs1141109	G	C	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	202715244	rs3216061	G	GA	6512.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr1	202715284	rs1141108	G	A	13363.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr1	202718028	rs1892163	A	G	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr1	202718202	rs1892164	G	A	9037.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:175,412:0.70:587
chr1	202718310	rs10920472	T	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:130,58:0.31:188
chr1	202722277	rs4950742	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr1	202731986	rs140328663	C	CCTCAA	1022.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr1	202733238	rs3196669	C	T	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	202735751	rs12140729	T	C	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr1	202735879	rs7528426	C	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.311;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.765;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	202743634	rs12410981	G	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr1	202777215	rs12028388	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.954;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:90,37:0.29:127
chr1	202777961	rs10920486	C	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr1	202794787	rs12139944	T	C	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:145,246:0.63:391
chr1	202795068	rs10800870	C	T	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:272,109:0.29:381
chr1	202888947	rs3182429	T	C	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=1.002;QD=5.30;ReadPosRankSum=-0.063;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:150,74:0.33:224
chr1	202889207	rs7520522	T	C	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	202915555	rs2275735	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr1	202931839	rs2232854	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.549;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:102,36:0.26:138
chr1	202933657	rs2232847	T	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr1	202933992	rs1418445	G	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr1	202934761	rs141825609	C	CT	840.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.080;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.03;ReadPosRankSum=0.135;SOR=0.138;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	202934765	rs12125832	C	T	849.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.123;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.47;ReadPosRankSum=0.727;SOR=0.121;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr1	202956236	rs870094	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:166,68:0.29:234
chr1	202956340	rs705754	T	G	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:27,102:0.79:129
chr1	202977809	rs6678040	G	A	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.173;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=1.070;QD=2.85;ReadPosRankSum=2.543;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr1	202978032	rs1418444	C	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr1	202985327	rs75329371	T	G	4197.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:64,174:0.73:238
chr1	202990110	rs71142585	CT	C	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=5.379;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.503;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:42,44:0.51:86
chr1	203003641	rs10920550	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=5.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.118;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr1	203003870	rs782800	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:110,45:0.29:155
chr1	203004367	rs10920551	C	T	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:84,195:0.70:279
chr1	203004627	rs5780134	A	AC	6005.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.61;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr1	203004930	rs139600380	T	TAGC	686.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr1	203006098	rs782803	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr1	203006179	rs782804	G	A	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:66,169:0.72:235
chr1	203006243	rs782805	A	G	16298.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr1	203008174	rs61821060	G	C	14508.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr1	203008286	rs10920553	C	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:202,77:0.28:279
chr1	203012661	rs372177187	CGT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.911;QD=0.43;ReadPosRankSum=0.882;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:159,19:0.11:178
chr1	203012705	rs7547566	C	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.357;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr1	203012906	rs4950908	G	A	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr1	203023122	rs2291691	A	C	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:77,150:0.66:227
chr1	203023240	rs10635298	G	GGC	2407.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:19,60:0.76:79
chr1	203024767	rs3736314	C	T	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:187,94:0.33:281
chr1	203025209	rs11590950	G	C	5147.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:111,242:0.69:353
chr1	203025428	rs12097602	G	A	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=1.257;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr1	203028711	rs4590732	C	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	203029017	rs2270546	A	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.984;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr1	203030071	rs2270545	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:80,38:0.32:118
chr1	203030685	rs2270543	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	203032922	rs1416262	C	T	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	203036757	rs2275354	T	C	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr1	203040673	rs9803710	A	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	203040740	rs11583155	T	C	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	203040816	rs2270540	G	C	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	203040922	rs2270541	G	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-0.062;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:94,26:0.22:120
chr1	203045413	rs11578206	G	T	6420.77	.	AC=1;AF=0.500;AN=2;DB;DP=1033;set=Intersection	GT:AD:AF:DP	0/1:687,346:0.33:1033
chr1	203045583	rs6682652	T	C	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:389,217:0.36:606
chr1	203053768	rs903356	T	C	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr1	203053889	rs12143972	C	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,24:0.28:85
chr1	203054727	rs138462164	G	T	7942.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:184,354:0.66:538
chr1	203055101	rs4950877	A	G	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:74,191:0.72:265
chr1	203097327	rs56013064	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr1	203098275	rs2228079	T	G	18802.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr1	203098455	rs10920569	T	C	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	203137784	rs35823777	A	ACT	13890.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	203138304	rs33945931	C	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr1	203148633	rs4950927	A	G	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr1	203152801	rs880633	T	C	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:58,100:0.63:158
chr1	203153555	rs12128727	C	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr1	203153634	rs2071579	C	G	5491.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:121,241:0.67:362
chr1	203154532	rs1538372	A	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:10,54:0.84:64
chr1	203155882	rs4950928	G	C	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:19,73:0.79:92
chr1	203175107	rs2494296	A	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr1	203187341	rs142759151	T	TGGTCAA	2811.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:29,70:0.71:99
chr1	203188692	rs2486958	A	C	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:45,120:0.73:165
chr1	203192137	rs3820145	T	C	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:86,175:0.67:261
chr1	203192567	rs2297949	G	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr1	203192820	rs10920586	C	T	1920.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr1	203194186	rs2297950	C	T	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:49,81:0.62:130
chr1	203274618	rs55810826	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:138,58:0.30:196
chr1	203274936	rs6682806	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-1.182;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr1	203311736	rs1891180	T	C	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	203317162	rs7543148	C	T	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:64,138:0.68:202
chr1	203452409	rs41313926	G	A	3354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=796;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.544;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:584,211:0.27:795
chr1	203452720	rs2233725	C	T	3842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.002;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:641,229:0.26:870
chr1	203465396	rs2242199	T	C	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.866;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:125,38:0.23:163
chr1	203465450	rs72743632	G	A	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr1	203471963	rs72743636	T	C	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:291,138:0.32:429
chr1	203472119	rs72743637	G	A	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.015;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:335,121:0.27:456
chr1	203652444	rs1419114	A	G	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr1	203667409	rs2228445	T	C	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr1	203667577	rs139986068	TA	T	1167.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr1	203677250	rs3753036	G	A	5648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-1.595;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:93,256:0.73:349
chr1	203679934	rs2032018	A	G	1666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-0.634;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:40,75:0.65:115
chr1	203689936	rs4951112	C	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr1	203698627	rs2365862	C	T	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=10.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-1.494;SOR=2.807;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr1	203698672	rs5780193	CA	C	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.792;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.053;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr1	203740458	rs3820196	C	A	1052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=0.143;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:89,31:0.26:120
chr1	203740462	rs3820195	G	A	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=0.253;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:96,33:0.26:129
chr1	203740615	rs3737976	T	C	3443.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:44,148:0.77:192
chr1	203741368	rs3737973	C	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr1	203766827	rs872032	T	C	5037.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:101,232:0.70:333
chr1	203768328	rs7552670	T	C	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:361,179:0.33:540
chr1	203769532	rs7540041	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr1	203787700	rs4951260	T	C	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	203803016	rs6694647	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	203821200	rs7512877	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	203833062	rs142737263	CTCTG	C	813.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr1	204006538	rs4951291	T	C	390.85	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr1	204006597	rs4951039	G	A	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr1	204010389	rs10437107	G	T	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:48,97:0.67:145
chr1	204081655	rs374243810	A	ACACACT,ACACACACACT	2884.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.74;QD=61.38;SOR=1.455;set=HC	GT:AD:AF:DP	1/2:1,18,28:0.38,0.60:47
chr1	204081892	rs2250538	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	204085609	rs7551756	A	G	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:301,146:0.33:447
chr1	204086147	rs16852889	T	C	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:35,118:0.77:153
chr1	204095280	rs41306221	T	C	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:58,115:0.66:173
chr1	204101421	rs12730254	G	A	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:24,68:0.74:92
chr1	204103618	rs2293335	G	A	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:125,69:0.36:194
chr1	204108961	rs11799485	A	G	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr1	204110334	rs10793755	A	G	10706.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr1	204115934	rs2293337	C	T	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:73,181:0.71:254
chr1	204130376	rs2272237	G	C	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr1	204198209	rs3795571	A	G	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	204199614	rs10900562	C	T	10622.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	204210750	rs4412655	C	A	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	204210791	rs4951325	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	204214975	.	TACACACAC	T,TAC	4659.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=168;set=Intersection	GT:AF:DP	1/2:0.25,0.75:115
chr1	204216410	rs4951329	C	T	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	204216468	rs4512713	C	T	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr1	204216601	rs4288652	G	A	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	204219850	rs4951331	G	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	204230581	rs3795569	G	A	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	204234196	.	G	GGT	3575.73	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:13,112:0.90:125
chr1	204234222	rs4076020	T	C	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=41.90;SOR=1.657;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	204234225	rs4073136	G	A	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=47.03;SOR=1.583;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	204237416	rs10900571	C	T	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr1	204379452	rs2089891	T	C	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:67,135:0.67:202
chr1	204379617	rs3014626	T	C	7588.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	204394888	rs372358199	CA	C	1092.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr1	204396728	rs17406271	A	C	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:75,112:0.60:187
chr1	204396745	rs370349965	GA	G	2394.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:83,136:0.62:219
chr1	204396830	rs17334387	G	A	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:99,191:0.66:290
chr1	204398073	rs61758009	C	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.82;ReadPosRankSum=-1.760;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	204398077	rs61758008	C	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.82;ReadPosRankSum=-2.048;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	204399061	rs2271419	A	G	7150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=2.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.82;ReadPosRankSum=-0.721;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:82,175:0.68:257
chr1	204399064	rs2271420	G	A	7188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.82;ReadPosRankSum=-0.865;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:86,182:0.68:268
chr1	204403659	rs3747636	A	G	2809.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:65,133:0.67:198
chr1	204409281	rs3014631	C	G	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	204411942	rs1107339	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr1	204413297	rs2292459	C	T	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=1.185;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:123,72:0.37:195
chr1	204413297	.	CGG	TGA	1757	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=32;NR=27;PP=1757;QD=30.6858961841;SC=GGGCCTGTTTCGGAGAAAGGG;SbPval=0.48;Source=Platypus;TC=177;TCF=99;TCR=78;TR=59;WE=204413307;WS=204413287;set=Platypus	GT:AD:AF:DP	0/1:118,59:0.33:177
chr1	204413299	rs2292460	G	A	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=1.206;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:122,71:0.37:193
chr1	204416501	rs3827534	C	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr1	204418889	rs2999492	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr1	204418939	rs3014637	C	T	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=3.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.490;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr1	204425028	rs3765156	G	A	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:43,98:0.70:141
chr1	204426052	.	A	ACACC	187	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=3;HapScore=2;MGOF=24;MMLQ=28;MQ=61.6;NF=5;NR=4;PP=187;QD=21.7777777778;SC=ACACACACACACCAGCCGAAC;SbPval=0.48;Source=Platypus;TC=13;TCF=8;TCR=5;TR=9;WE=204426060;WS=204426042;set=Platypus	GT:AD:AF:DP	1/0:4,9:0.69:13
chr1	204426295	rs1008833	A	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr1	204426373	rs2137255	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	204429212	rs5013460	AT	TG	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	204429215	rs5013458	TA	AG	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.57;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	204429285	rs2999485	A	G	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	204429838	rs2271414	C	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	204433093	rs2271415	A	C	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr1	204433511	rs11455991	T	TC	2694.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	204434277	rs2942149	T	C	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	204434325	rs58247897	C	CCT	2716.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:50,68:0.58:118
chr1	204434326	rs17847779	A	G	2724.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:50,70:0.58:120
chr1	204436066	rs16853773	G	A	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:45,125:0.74:170
chr1	204438334	rs1124777	C	T	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	204438643	rs1553921	G	T	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr1	204494756	.	G	GT	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DP=348;ExcessHet=3.0103;FS=8.230;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.900;QD=1.30;ReadPosRankSum=-1.659;SOR=1.369;set=HC	GT:AD:AF:DP	0/1:195,61:0.24:256
chr1	204495595	rs200388119	G	GT,GTT	734.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.72;MQRankSum=-0.401;QD=17.09;ReadPosRankSum=1.905;SOR=0.404;set=HC	GT:AD:AF:DP	1/2:4,26,13:0.60,0.30:43
chr1	204501383	rs4252697	C	T	5768.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:116,262:0.69:378
chr1	204505976	rs35493922	GA	G	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	204506107	rs4245738	C	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	204506174	rs4252704	CT	C	1065.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,47:0.58:81
chr1	204512100	rs4252717	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	204515863	rs2290855	C	T	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	204516025	rs2290854	A	G	17712.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr1	204518842	rs4245739	C	A	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr1	204587047	rs11588857	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chr1	204587240	rs3747632	G	A	1101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.279;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:174,68:0.28:242
chr1	204587569	rs3747631	G	C	10896.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:204,485:0.70:689
chr1	204588140	rs3747630	G	A	4951.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:77,216:0.74:293
chr1	204589066	rs36012907	C	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=3.208;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:91,39:0.30:130
chr1	204589101	rs3789044	G	A	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.138;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:47,77:0.62:124
chr1	204915393	rs2595960	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chr1	204921258	rs12141283	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:344,141:0.29:485
chr1	204942591	rs149576580	C	T	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:50,107:0.68:157
chr1	204943285	rs2595945	A	T	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	204943947	rs2246662	C	A	2491.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:35,104:0.75:139
chr1	204943991	rs2246661	C	T	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.60;ReadPosRankSum=-0.093;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:11,67:0.86:78
chr1	204943991	.	CA	TG	895	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=3;HapScore=1;MGOF=16;MMLQ=28;MQ=60.0;NF=13;NR=33;PP=895;QD=20.6188668448;SC=TGGAGAGGGACAAGGAGGCCA;SbPval=0.42;Source=Platypus;TC=58;TCF=15;TCR=43;TR=46;WE=204944000;WS=204943981;set=Platypus	GT:AD:AF:DP	0/1:12,46:0.79:58
chr1	204943992	rs2794861	A	G	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.936;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	204945316	rs6656887	T	C	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.357;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:131,45:0.26:176
chr1	204945458	rs6659514	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr1	204945489	rs6693024	C	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr1	204945665	rs6668275	G	A	1942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.324;QD=4.09;ReadPosRankSum=-1.338;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:348,127:0.27:475
chr1	204945678	rs58682625	A	AT	4056.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.185;QD=7.95;ReadPosRankSum=-2.707;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:365,145:0.28:510
chr1	204945746	rs6668366	G	C	1824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=1.497;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:243,107:0.31:350
chr1	204945934	rs6657372	A	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:196,101:0.34:297
chr1	204946668	rs6663231	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.774;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:107,39:0.27:146
chr1	204946764	rs6663324	T	C	2138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-1.772;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:369,145:0.28:514
chr1	204966428	rs2802808	C	G	37970.77	.	AC=2;AF=1.00;AN=2;DB;DP=1412;set=Intersection	GT:AD:AF:DP	1/1:0,1405:1.00:1405
chr1	204966690	rs2794858	G	A	8590.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	204966749	rs2595944	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	204978533	rs1530745	A	G	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:447,229:0.34:676
chr1	204978643	rs1530744	C	A	4590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.123;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:820,297:0.27:1117
chr1	205028581	rs2305278	C	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr1	205028883	rs35182846	CAG	C	1813.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr1	205030862	rs41264869	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	205031116	rs2229866	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:366,158:0.30:524
chr1	205031744	rs2242001	G	A	1342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.460;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.831;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:222,87:0.28:309
chr1	205031769	rs2242000	G	A	1301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.902;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:204,84:0.29:288
chr1	205033283	rs1470637	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.913;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=5.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.305;SOR=1.915;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr1	205033374	rs2305277	T	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-1.580;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:130,49:0.27:179
chr1	205034488	rs4460698	A	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.101;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:92,31:0.25:123
chr1	205034852	rs143128501	A	ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC	2551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=15.301;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=3.160;QD=35.44;ReadPosRankSum=0.209;SOR=2.497;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr1	205038731	rs2305275	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr1	205039295	rs56283998	A	C	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-1.456;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:116,43:0.27:159
chr1	205041158	rs2229868	C	T	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:57,184:0.76:241
chr1	205041542	rs3903399	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr1	205042115	rs56338794	C	T	599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.916;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:82,30:0.27:112
chr1	205042939	rs17416088	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,38:0.35:109
chr1	205052939	rs4950979	G	A	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	205053219	rs4951168	C	T	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr1	205069404	rs11240356	G	A	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:80,164:0.67:244
chr1	205085358	rs12025836	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr1	205091105	rs12033568	G	C	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:46,97:0.68:143
chr1	205116635	rs11367	A	T	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:40,96:0.71:136
chr1	205119981	rs3851295	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,84:0.59:142
chr1	205129319	rs1062715	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-1.248;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:111,39:0.26:150
chr1	205130413	rs3851294	A	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	205133169	rs61822658	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr1	205138321	rs35845538	G	C	2283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.354;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:411,150:0.27:561
chr1	205240913	rs9659978	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	205272926	rs1106201	C	T	8575.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr1	205272983	rs1106202	C	G	11318.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr1	205274174	rs10793728	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	205275206	rs4951195	AG	TT	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	205275421	rs4951197	A	G	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr1	205312280	rs7549293	C	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	205325458	rs2298251	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	205385412	rs16855539	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:159,72:0.31:231
chr1	205385498	rs6688045	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:209,97:0.32:306
chr1	205389460	rs16855560	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr1	205417586	rs74141216	C	T	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-1.115;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr1	205492756	rs7529442	A	G	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr1	205495392	rs2297837	A	G	10069.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr1	205495976	rs1544154	A	G	10489.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr1	205498021	rs7531230	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	205499577	rs6668356	C	G	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	205499660	rs41264895	C	T	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr1	205500543	rs11240507	T	C	15036.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr1	205553346	rs372542132	A	ATT	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.316;QD=6.53;ReadPosRankSum=-0.494;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr1	205554085	rs7526132	G	C	15572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.01;ReadPosRankSum=-0.605;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:154,402:0.72:556
chr1	205554095	rs7515820	A	C	14742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.19;ReadPosRankSum=-0.189;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:142,363:0.72:505
chr1	205555145	rs7531623	G	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	205561372	rs7529077	C	T	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:89,176:0.66:265
chr1	205561511	rs6593956	T	A	913.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-0.144;QD=29.48;ReadPosRankSum=-0.443;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr1	205568442	rs2282452	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:55,18:0.25:73
chr1	205600653	rs6593957	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	205615791	rs6673283	A	G	6054.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:124,289:0.70:413
chr1	205615947	rs4951250	C	A	1691.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=1.441;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:9,83:0.90:92
chr1	205686523	.	G	GTT	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-2.005;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr1	205687348	rs71709139	CTTTTTTCTTT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.819;SOR=1.616;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr1	205689807	rs823094	T	G	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:101,47:0.32:148
chr1	205696671	rs1772147	G	A	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr1	205697138	rs77732109	G	A	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	205739396	rs823139	T	G	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	205744138	rs708725	G	T	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:222,118:0.35:340
chr1	205764640	rs823156	G	A	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr1	205766159	rs5780304	CA	C	11273.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr1	205767885	rs708727	G	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:366,152:0.29:518
chr1	205779231	rs11240569	G	A	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:67,167:0.71:234
chr1	205801872	rs1361754	A	G	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=1.289;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:240,87:0.27:327
chr1	205809642	rs10900525	G	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.048;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr1	205812879	rs139066269	A	G	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-0.086;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:53,125:0.70:178
chr1	205812912	rs7518979	A	G	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=1.255;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:57,126:0.69:183
chr1	205814485	rs1104899	G	A	8323.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:149,369:0.71:518
chr1	205814497	rs1891460	T	C	20179.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr1	205859798	rs12028467	G	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr1	205890679	rs12759719	T	C	6003.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	205896475	rs7366204	C	T	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	205896948	rs3811424	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	206327510	rs61742539	T	C	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=2.336;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:156,56:0.26:212
chr1	206328647	rs28694519	G	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr1	206328803	rs41302235	T	C	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:302,165:0.35:467
chr1	206516159	rs199928990	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.60;MQRankSum=0.809;QD=5.49;ReadPosRankSum=0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr1	206516261	rs201036189	C	T	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.276;MLEAC=1;MLEAF=0.500;MQ=49.05;MQRankSum=-0.455;QD=10.18;ReadPosRankSum=0.336;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:88,76:0.46:164
chr1	206566860	rs11361942	TA	T	1520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.271;MLEAC=1;MLEAF=0.500;MQ=51.41;MQRankSum=-10.712;QD=7.64;ReadPosRankSum=-1.025;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:92,107:0.54:199
chr1	206566904	rs2919105	T	C	7991.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:196,328:0.63:524
chr1	206567084	rs75573336	C	T	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-9.837;QD=2.41;ReadPosRankSum=0.513;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:667,164:0.20:831
chr1	206567100	rs2480377	C	T	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:447,198:0.31:645
chr1	206574682	rs12146010	C	G	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=54.30;MQRankSum=0.378;QD=9.85;ReadPosRankSum=1.050;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr1	206579936	rs201644221	A	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-1.184;QD=4.87;ReadPosRankSum=1.130;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr1	206603535	rs2297539	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,112:0.67:166
chr1	206623685	rs12725078	G	T	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	206623866	rs11809494	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr1	206626607	rs11120575	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:164,72:0.31:236
chr1	206626779	rs2483059	A	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr1	206626828	rs2483058	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr1	206631518	rs10864212	G	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr1	206634429	rs17018890	A	G	4959.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:106,212:0.67:318
chr1	206646427	rs1930437	C	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:33,64:0.66:97
chr1	206647742	rs1539242	A	G	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:2,329:0.99:331
chr1	206647787	rs1539243	T	C	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	206648037	rs2297546	C	G	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	206648378	rs1059704	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr1	206665896	rs2336940	C	G	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr1	206666734	rs12026566	T	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:159,59:0.27:218
chr1	206667441	rs2184030	G	A	3342.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:72,149:0.67:221
chr1	206669465	rs3748022	C	T	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.621;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:129,56:0.30:185
chr1	206670827	rs12754274	G	T	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:76,172:0.69:248
chr1	206680983	rs2095124	A	C	9947.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	206757857	rs4845112	C	A	10071.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:191,437:0.70:628
chr1	206758077	rs4418597	T	A	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr1	206765254	rs12079722	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr1	206766799	.	GGAGA	G	190	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5208;HP=1;HapScore=3;MGOF=86;MMLQ=23;MQ=50.74;NF=6;NR=4;PP=190;QD=19.5;SC=AAAACTAAATGGAGAGAGAGA;SbPval=0.38;Source=Platypus;TC=13;TCF=9;TCR=4;TR=10;WE=206766810;WS=206766792;set=Platypus	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	206766819	rs138574590	AGAGC	A	347.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	206766845	.	AGTGTGTGT	A	647.73	.	AC=1;AF=0.500;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.39;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr1	206766855	rs111968081	T	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.65;ReadPosRankSum=1.189;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr1	206766857	rs28629842	C	A	497.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.89;ReadPosRankSum=1.200;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr1	206766859	.	T	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.358;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr1	206769047	rs11584983	T	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr1	206770283	rs11284613	AC	A	716.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr1	206772194	rs373767533	ACT	A	1805.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,45:0.78:58
chr1	206772753	rs4845116	A	G	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	206773659	rs6662929	A	G	8683.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr1	206776200	rs6668054	C	T	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	206776203	rs6675741	T	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	206778642	rs4077413	A	C	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr1	206810946	rs17013271	C	T	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	206904644	rs58152125	C	CGT	2221.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:19,97:0.84:116
chr1	206905043	rs4073250	C	T	12295.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr1	206943351	rs3024494	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	206944233	rs1554286	A	G	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.600;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:163,68:0.29:231
chr1	206944645	rs1518111	T	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr1	206944861	rs1518110	A	C	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr1	207009910	rs2243170	T	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	207014472	rs2243188	A	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.357;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr1	207015957	rs2243191	T	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:117,55:0.32:172
chr1	207040659	rs2232360	G	A	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr1	207087053	rs72758947	A	G	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr1	207111257	rs291095	G	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	207134104	rs61729352	G	T	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:325,145:0.31:470
chr1	207195779	rs2842726	A	G	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,213:0.99:215
chr1	207237233	.	GGT	G	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.370;QD=4.77;ReadPosRankSum=-0.487;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr1	207243851	rs923109	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	207288897	rs12031629	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.798;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.350;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:100,38:0.28:138
chr1	207297484	rs2842707	G	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr1	207297680	rs1126618	T	C	5194.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:93,242:0.72:335
chr1	207500293	rs4844591	C	T	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	207504669	rs2184476	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	207510289	rs2490257	T	C	15760.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:154,568:0.79:722
chr1	207510548	rs10746462	A	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	207510596	rs10746463	G	A	9963.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr1	207512577	rs10641442	T	TTAA	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	207520376	rs2404781	T	C	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	207520610	rs368894631	AT	A	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.410;QD=1.53;ReadPosRankSum=0.086;SOR=0.348;set=HC	GT:AD:AF:DP	0/1:79,29:0.27:108
chr1	207527285	rs11120753	G	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	207532861	rs56253023	C	CT	1297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.416;QD=7.09;ReadPosRankSum=0.417;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:75,108:0.59:183
chr1	207627998	rs17258955	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr1	207643949	rs10863322	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	207653395	rs17617	C	A	11135.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr1	207679229	rs4844599	T	G	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.968;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=1.028;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:354,123:0.26:477
chr1	207679307	rs4844600	A	G	14019.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr1	207753621	rs2274567	A	G	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=4.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.876;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:258,103:0.29:361
chr1	207757936	rs646817	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,49:0.35:141
chr1	207758232	rs1752688	A	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:314,144:0.31:458
chr1	207760773	rs3737002	C	T	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:75,163:0.68:238
chr1	207782916	rs4844609	A	T	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr1	207782931	rs6691117	A	G	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=5.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.791;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:179,66:0.27:245
chr1	207784968	rs3818361	A	G	19287.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr1	207790088	rs3811381	C	G	2649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.552;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:376,168:0.31:544
chr1	207795320	rs2296160	A	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	207818719	rs11118237	G	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:137,67:0.33:204
chr1	207850560	rs67422482	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-1.367;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr1	207850589	rs34451130	A	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr1	207851611	rs2296158	A	G	2112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.649;QD=3.88;ReadPosRankSum=0.408;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:399,146:0.27:545
chr1	207857158	rs12411037	T	C	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.231;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.040;QD=4.93;ReadPosRankSum=2.215;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:258,100:0.28:358
chr1	207888739	rs7553211	G	T	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=1.977;QD=3.08;ReadPosRankSum=-0.078;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:169,53:0.24:222
chr1	207888760	rs2796261	C	T	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:40,135:0.77:175
chr1	207890866	rs2796257	T	C	12572.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:220,556:0.72:776
chr1	207941191	rs2724374	G	T	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	207956559	rs1962149	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr1	207959122	.	CTTTT	C	469.73	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	207959136	.	T	TAAA	469.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.14;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	207992546	rs12123251	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr1	208042423	rs188716815	G	A	5083.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:81,230:0.74:311
chr1	208061530	rs2235766	A	G	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.481;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:102,42:0.29:144
chr1	208062260	rs2745952	T	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	208063100	rs5780411	G	GA,GAA	3131.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.054;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.542;QD=17.11;ReadPosRankSum=1.516;SOR=1.009;set=HC	GT:AD:AF:DP	1/2:21,112,50:0.61,0.27:183
chr1	208200737	rs659192	C	G	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:38,95:0.71:133
chr1	208204794	rs76190764	CTGTT	C	3462.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	208211887	rs905100	T	C	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	208212397	rs2767566	A	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	208213125	rs1751580	A	G	9538.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:2,356:0.99:358
chr1	208219164	rs1536471	A	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr1	208225909	rs841865	G	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:38,84:0.69:122
chr1	208233984	rs2498035	C	G	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,116:0.63:183
chr1	208233998	rs2251465	C	T	3374.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:75,142:0.65:217
chr1	208255877	rs6540453	T	C	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:39,114:0.75:153
chr1	208270244	rs3818517	A	C	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:63,43:0.41:106
chr1	208276399	rs10654695	C	CCTCT	10829.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,231:1.00:232
chr1	208390086	rs1664227	G	C	7396.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:163,332:0.67:495
chr1	208391098	rs11119014	T	C	3045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.574;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:517,201:0.28:718
chr1	208391254	rs2782948	C	T	4644.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:71,199:0.74:270
chr1	209605636	rs3842530	TAGCAGCAGCAGC	T	1539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.904;QD=4.48;ReadPosRankSum=-0.464;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:241,103:0.30:344
chr1	209781417	.	TAC	T	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.714;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr1	209782545	rs9430006	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	209784663	rs10746421	A	C	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.202;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr1	209784927	rs2076230	G	T	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=5.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.539;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:156,62:0.28:218
chr1	209785011	rs2076226	G	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.330;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.769;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr1	209785206	rs11119315	G	A	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:517,249:0.33:766
chr1	209785957	rs2272879	T	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	209786078	rs2272880	G	A	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=2.454;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:133,54:0.29:187
chr1	209788703	rs1049607	T	C	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.151;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:164,93:0.36:257
chr1	209792015	rs5780528	A	AC	8549.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr1	209799253	rs2179402	A	G	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	209804095	rs4844863	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	209807972	rs1130667	G	A	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	209811886	rs2076356	T	G	4239.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.457;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.257;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=-0.503;SOR=0.423;set=HC	GT:AD:AF:DP	1/1:1,162:0.99:163
chr1	209812063	rs2076357	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	209849002	rs3817870	T	C	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	209849399	rs3830766	AG	A	4755.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	209849406	rs1473683	T	G	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	209879205	rs149277936	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.679;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.118;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:60,24:0.29:84
chr1	209880216	rs72215241	C	CA	5631.73	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:120,209:0.64:329
chr1	209880259	rs12086634	T	G	6934.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:146,307:0.68:453
chr1	209880508	rs58182526	GA	G	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.945;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.726;QD=9.74;ReadPosRankSum=1.326;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr1	209905734	rs932335	G	C	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:18,85:0.83:103
chr1	209933331	rs6685077	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr1	209933540	rs2076150	A	G	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:97,212:0.69:309
chr1	209933757	rs6696463	G	C	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:83,166:0.67:249
chr1	209935778	rs10489342	A	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:41,107:0.72:148
chr1	209936466	rs7548219	A	G	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:79,161:0.67:240
chr1	209936571	rs6540555	A	G	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	209936631	rs6540556	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr1	209936914	rs17015169	C	T	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:97,175:0.64:272
chr1	209936964	rs34406510	T	TCA	4341.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:55,109:0.66:164
chr1	209950681	rs649275	T	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr1	209950760	rs669694	C	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr1	209953706	rs11590807	C	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	209965587	rs2235375	G	C	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.951;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:145,62:0.30:207
chr1	209968684	rs2013162	C	A	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:161,77:0.32:238
chr1	209969902	rs7552506	G	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.923;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr1	210001543	rs12404886	A	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-1.036;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:112,29:0.21:141
chr1	210003402	rs599649	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr1	210004199	rs585627	C	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.398;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=2.108;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:134,50:0.27:184
chr1	210006437	rs655712	GC	AT	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr1	210006603	rs656566	C	T	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-1.000;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:226,93:0.29:319
chr1	210008367	rs685248	C	G	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=-0.996;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr1	210008374	rs41274838	C	T	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-2.009;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:98,50:0.34:148
chr1	210008673	rs686582	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr1	210012102	rs1962735	A	G	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr1	210015568	rs10570454	GCT	G	1192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=1.362;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:127,39:0.23:166
chr1	210111722	.	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-1.192;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr1	210411266	rs11347154	GT	G	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=5.606;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.071;QD=4.43;ReadPosRankSum=-1.016;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:56,41:0.42:97
chr1	210414879	.	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.180;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr1	210536025	rs7527939	C	T	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.116;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr1	210536078	rs2294848	C	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.730;QD=2.82;ReadPosRankSum=-0.535;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:151,41:0.21:192
chr1	210577873	rs2066721	G	C	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr1	210591742	rs3215542	TG	T	883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=-0.360;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:115,45:0.28:160
chr1	210686570	rs4545340	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	210761462	rs4297293	G	C	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	210970823	rs142798110	T	TG	5733.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:67,177:0.73:244
chr1	211263836	rs17188860	T	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr1	211264140	rs79802694	A	G	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr1	211276828	rs3762452	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:99,41:0.29:140
chr1	211280724	rs199641326	TAA	T	1109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.596;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:264,83:0.24:347
chr1	211280737	rs56223346	A	AC	6748.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-1.791;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:96,251:0.72:347
chr1	211380770	rs7525401	T	C	2682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.561;QD=4.58;ReadPosRankSum=-0.358;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:416,170:0.29:586
chr1	211444382	rs36104032	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr1	211447435	rs5780634	CT	C	176.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	211451393	rs72088513	TATC	T	972.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	211451467	rs11577985	T	C	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:54,137:0.72:191
chr1	211452529	rs10708960	TA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.120;QD=5.44;ReadPosRankSum=0.552;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr1	211527609	rs7530570	C	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	211527958	rs114065494	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr1	211533352	rs2230779	A	G	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-2.202;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:121,48:0.28:169
chr1	211538597	rs75135266	C	A	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.010;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:97,34:0.26:131
chr1	211545442	rs10717294	CT	C	214.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=-0.528;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,22:0.69:32
chr1	211652755	rs11119749	T	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,50:0.74:68
chr1	211832096	rs146064437	GA	G	30.25	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=10.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	211836789	rs12031285	T	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.979;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr1	211840498	rs2230489	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr1	211846876	rs701929	A	G	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.910;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:220,78:0.26:298
chr1	212142054	rs11322485	GA	G	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.962;QD=9.32;ReadPosRankSum=1.171;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:13,39:0.75:52
chr1	212151914	rs112654546	A	G	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:18,87:0.83:105
chr1	212154688	rs114914822	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	212209367	rs3215984	T	TC	1225.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	212217971	rs35704923	C	CTT	2133.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:14,55:0.80:69
chr1	212220847	rs2970592	G	A	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:15,54:0.78:69
chr1	212236157	rs4951436	G	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	212240063	rs3738449	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr1	212241714	rs201294353	TA	T	1015.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.089;QD=7.69;ReadPosRankSum=-0.233;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:45,87:0.66:132
chr1	212250820	rs17656453	T	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr1	212251103	rs6658972	A	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	212251367	rs5780675	GT	G	1972.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:4,99:0.96:103
chr1	212251402	rs17718437	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:109,57:0.34:166
chr1	212273639	rs3135474	C	T	8725.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	212274413	rs6540718	A	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	212515613	rs1774249	C	T	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:60,92:0.61:152
chr1	212521639	rs701908	T	G	8591.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	212526288	rs792442	C	T	7744.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr1	212530192	rs792439	T	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	212538771	rs71690513	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=7.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.567;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr1	212553111	rs701905	G	C	728.79	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:4,28:0.88:32
chr1	212560327	rs792449	A	G	10097.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr1	212588206	rs518793	C	G	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:63,126:0.67:189
chr1	212615875	rs521469	T	C	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-0.207;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:32,101:0.76:133
chr1	212616080	rs150643811	C	CATTTT	441.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr1	212617829	rs2275712	C	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=0.204;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:52,84:0.62:136
chr1	212617860	.	C	CGT	393.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-0.204;QD=28.08;ReadPosRankSum=1.005;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr1	212619339	rs4804	T	C	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:64,110:0.63:174
chr1	212791288	rs3839030	CGT	C	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=31.69;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	212799870	rs3122713	A	G	8882.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr1	212799949	rs3795842	C	T	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr1	212870410	rs2233924	G	A	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:256,111:0.30:367
chr1	212873181	rs113665144	C	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr1	212900434	rs3835160	C	CG	368.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr1	212900487	rs2244935	A	G	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	212911836	rs15702	T	C	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.388;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:199,73:0.27:272
chr1	212912108	rs67229635	ATT	A	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.814;QD=6.47;ReadPosRankSum=-1.569;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr1	212939477	.	C	CA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=4.820;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.536;QD=3.27;ReadPosRankSum=0.721;SOR=1.665;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr1	212955454	rs11120026	G	A	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.315;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:127,41:0.24:168
chr1	212965149	rs2792559	C	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,60:0.69:87
chr1	212970375	rs1284800	A	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr1	212985466	rs12130945	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr1	213009178	rs369495200	CA	C	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.175;QD=6.83;ReadPosRankSum=-2.770;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:23,39:0.63:62
chr1	213009469	rs10864004	A	G	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	213031709	rs2201603	C	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	213031948	rs11120047	G	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:142,67:0.32:209
chr1	213032568	rs12023052	T	A	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:97,42:0.30:139
chr1	213036924	rs3086478	C	CAAAA	251.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr1	213037244	rs2252377	A	G	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:40,123:0.75:163
chr1	213056819	rs2644547	A	G	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	213056892	rs12125982	A	G	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-3.336;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr1	213058852	rs7536716	T	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr1	213062017	rs112024320	T	TTTG	928.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr1	213068192	rs2792558	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	213068233	rs12408694	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr1	213068595	rs3207090	C	T	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.541;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:275,100:0.27:375
chr1	213124871	rs3123305	G	A	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	213134407	rs71634696	G	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr1	213139748	rs3738805	T	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:80,41:0.34:121
chr1	213140362	rs10779597	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.290;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr1	213140398	rs10779598	A	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=2.277;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:69,34:0.33:103
chr1	213146944	rs7511930	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=0.037;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr1	213173457	rs3738806	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	213178340	rs11120076	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.005;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr1	213180441	rs202124670	GA	G	215.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.680;QD=3.26;ReadPosRankSum=0.575;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr1	213224719	rs4951476	T	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-1.997;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:58,26:0.31:84
chr1	213405414	rs11271079	GGCAACTGAGGAT	G	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=4.523;QD=7.90;ReadPosRankSum=-1.001;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:68,25:0.27:93
chr1	214491536	rs55760458	G	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr1	214492286	rs1134647	G	A	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr1	214497861	rs6695148	G	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	214500907	rs17022608	A	C	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	214504604	rs2270704	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	214542668	rs3002311	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.773;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr1	214542819	rs1135352	T	C	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.449;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:304,121:0.28:425
chr1	214551276	rs3013451	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,33:0.30:111
chr1	214558228	rs3013446	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	214564340	rs7550799	T	C	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:323,139:0.30:462
chr1	214566845	rs7355212	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	214566952	rs4655342	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=0.399;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr1	214567013	rs11322819	CG	C	883.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:110,45:0.29:155
chr1	214625431	rs7355177	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr1	214638172	rs10864100	C	T	12049.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr1	214787130	rs2070064	G	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr1	214814571	rs3795521	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.485;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:73,16:0.18:89
chr1	214820099	rs3748697	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:92,42:0.31:134
chr1	214825289	rs71679696	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=3.597;QD=1.86;ReadPosRankSum=-0.888;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr1	214826196	rs335524	G	A	1816.78	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:12,79:0.87:91
chr1	214826364	rs335523	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr1	214826810	.	CTT	C,CT	3126.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.126;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.98;ReadPosRankSum=-1.067;SOR=0.651;set=HC	GT:AD:AF:DP	1/2:38,58,165:0.22,0.63:261
chr1	214828812	rs435043	A	G	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:50,107:0.68:157
chr1	214830617	rs438034	A	G	6511.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:143,290:0.67:433
chr1	214837110	rs7289	C	G	6644.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	215256544	.	C	CT	670.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=35.30;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	215345263	rs3834061	GTCTCTC	G	1937.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=41.23;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	215368514	rs1556907	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	215793834	rs14137	G	A	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	215814186	rs66968954	CA	C	360.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.68;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	215848587	rs2797234	T	C	14296.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr1	215848641	rs2797235	T	C	14173.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr1	215853748	rs5780842	GT	G	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.522;QD=2.33;ReadPosRankSum=-1.743;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chr1	215901492	rs2820718	C	T	2496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-1.062;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:76,116:0.60:192
chr1	215914751	rs41303285	G	T	4006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=-0.439;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:78,185:0.70:263
chr1	215916713	.	C	CATATATATATAT	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572;ClippingRankSum=-0.000;DP=54;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.674;QD=10.68;ReadPosRankSum=2.333;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr1	215916728	.	ATG	A	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=2.796;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.524;QD=12.04;ReadPosRankSum=1.158;SOR=0.129;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr1	215916730	.	G	A	494	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=3;MGOF=32;MMLQ=26;MQ=57.89;NF=4;NR=10;PP=494;QD=37.7693723248;SC=ATATATATATGTGTGTGTGTG;SbPval=0.47;Source=Platypus;TC=28;TCF=7;TCR=21;TR=14;WE=215916766;WS=215916718;set=Platypus	GT:AD:AF:DP	1/0:14,14:0.50:28
chr1	215916732	rs4053764	G	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.862;QD=7.34;ReadPosRankSum=1.814;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	215916742	.	G	GTATATA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-1.228;QD=11.53;ReadPosRankSum=0.411;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr1	215916744	.	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=9.084;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-1.313;QD=12.66;ReadPosRankSum=0.075;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	215916746	.	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=9.084;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-1.313;QD=10.66;ReadPosRankSum=-0.075;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr1	215916754	.	G	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.968;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-0.921;QD=13.84;ReadPosRankSum=-0.914;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	215916756	rs376300286	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-0.921;QD=11.05;ReadPosRankSum=-0.980;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr1	215916758	rs377724243	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-0.967;QD=12.90;ReadPosRankSum=-0.838;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	215956304	rs7518466	A	G	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr1	215960167	rs10864198	T	G	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:57,134:0.70:191
chr1	216144049	rs41277210	C	T	4810.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:87,216:0.71:303
chr1	216172380	rs10864219	A	G	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=0.101;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:24,71:0.75:95
chr1	216219781	rs6657250	A	G	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.147;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.027;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:163,49:0.23:212
chr1	216246675	rs35944387	AG	A	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.092;QD=2.71;ReadPosRankSum=-1.687;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr1	216348764	rs1805049	C	T	3449.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr1	216348918	rs150518677	T	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr1	216370130	rs386851	T	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr1	216373476	.	G	GA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.196;QD=0.60;ReadPosRankSum=-0.631;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:86,20:0.19:106
chr1	216390694	rs1324330	C	T	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	216592003	rs4253963	T	C	10235.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr1	216595306	rs10779261	C	T	8152.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	216679858	rs144848582	A	AT	841.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr1	216824505	rs10863261	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.267;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr1	216880662	rs11572672	G	A	6986.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:117,305:0.72:422
chr1	217604777	rs7520483	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr1	217671771	rs724803	C	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:38,115:0.75:153
chr1	217783810	rs12749938	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr1	217784431	rs145143662	A	AC	5932.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=7.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.50;ReadPosRankSum=-0.957;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:256,309:0.55:565
chr1	217793938	rs111668135	T	TTAA	171.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	217804325	rs944730	G	A	24832.77	.	AC=2;AF=1.00;AN=2;DB;DP=922;set=Intersection	GT:AD:AF:DP	1/1:0,922:1.00:922
chr1	217804635	rs34121469	T	C	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr1	217804955	rs10495062	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr1	217856803	rs12073566	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	217947738	rs6604561	G	A	4893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.888;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:124,226:0.65:350
chr1	218458551	rs946213	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	218458557	rs3831934	AG	A	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr1	218578726	rs142802402	ACT	A	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.976;QD=3.06;ReadPosRankSum=-0.416;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr1	218683417	.	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.495;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	219366400	rs35359058	T	TG	496.79	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr1	219383848	rs5781096	A	ACTTTTT	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	219383867	rs940571	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	219383905	rs940570	A	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=26.81;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr1	219706428	rs10746385	T	C	19567.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:2,762:1.00:764
chr1	219783279	rs79789352	T	A	8965.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.78;QD=26.22;SOR=1.223;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr1	220089352	rs2231734	A	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.696;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr1	220142023	rs1061248	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	220142070	rs1061242	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr1	220145371	rs2795315	T	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	220145584	rs1982986	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.335;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr1	220145637	rs1982985	A	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr1	220145655	rs1982984	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	220151808	rs3215088	C	CAA	522.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:51,16:0.24:67
chr1	220153332	rs34917248	T	TAA	4622.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr1	220154246	rs35193743	AT	A	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:8,55:0.87:63
chr1	220154659	rs10595099	TAAA	T	2669.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=18.80;ReadPosRankSum=-1.424;SOR=2.250;set=HC	GT:AD:AF:DP	1/1:16,126:0.89:142
chr1	220154768	rs1061160	C	T	9033.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:172,415:0.71:587
chr1	220156090	rs2647462	T	C	10966.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr1	220156427	rs1391566	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr1	220160360	rs2647435	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	220160433	rs2647434	A	G	7236.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr1	220162195	rs2254494	T	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	220178717	rs5781162	T	TA	1873.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr1	220184150	rs34170326	CA	C	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:5,31:0.86:36
chr1	220184164	rs28570471	A	G	2038.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.41;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	220192192	rs34320023	TA	T	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=1.089;QD=10.52;ReadPosRankSum=-0.664;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr1	220192495	rs2245457	C	G	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	220197545	rs2577159	C	T	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	220197625	rs2230301	G	T	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr1	220205943	rs2789816	G	A	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	220205980	rs2577138	A	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	220207017	rs2647456	C	T	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	220208154	rs2789817	C	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	220231180	rs34887640	CT	C	339.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr1	220239448	rs1146773	T	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	220240862	rs17563262	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr1	220321023	rs11095	A	G	3143.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:62,138:0.69:200
chr1	220331319	rs3767654	T	G	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:44,99:0.69:143
chr1	220332552	rs2789792	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	220332876	rs2808026	G	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	220335430	rs2164790	A	G	69.82	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr1	220355433	rs11343960	CT	C	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr1	220362857	rs35162828	AT	A	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.667;QD=10.29;ReadPosRankSum=0.430;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr1	220369745	rs35396665	TA	T	1209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-2.379;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:35,82:0.70:117
chr1	220406291	rs10863538	A	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr1	220603310	rs10553491	TGTGA	T	1348.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:17,64:0.79:81
chr1	220607685	rs1361256	G	A	6702.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	220607891	rs1338767	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	220789236	rs2786599	C	T	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	220789362	rs12137627	T	A	1145.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.46;ReadPosRankSum=-0.692;SOR=0.621;set=HC	GT:AD:AF:DP	1/1:3,53:0.95:56
chr1	220808921	rs10746403	T	C	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	220824115	rs12123306	G	C	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr1	220825523	rs3737296	A	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	220970028	rs2642438	A	G	11161.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:1,434:1.00:435
chr1	220986516	rs12144830	C	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	221053545	rs12141189	T	C	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:543,259:0.32:802
chr1	221054761	rs17597773	C	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:127,60:0.32:187
chr1	221507141	rs7555947	C	T	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	221509332	rs4382729	G	A	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.033;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:127,43:0.25:170
chr1	221912361	rs1141714	T	C	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:38,108:0.74:146
chr1	222734662	rs149239943	TC	T	1428.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:117,50:0.30:167
chr1	222736498	rs11485180	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,50:0.68:73
chr1	222736778	rs11487813	T	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	222737265	rs35877231	G	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	222737568	rs3008640	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	222750744	rs3008644	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr1	222751034	rs2936033	T	C	3226.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:45,131:0.74:176
chr1	222798106	rs3008617	G	A	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	222800913	rs17530776	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr1	222802006	rs2936053	A	G	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	222802803	rs3748626	T	G	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:97,210:0.68:307
chr1	222802926	rs3008620	C	T	6501.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:143,291:0.67:434
chr1	222803831	rs3748629	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr1	222821211	rs61824282	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,55:0.69:80
chr1	222823529	rs17465637	A	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=-0.527;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr1	222823743	rs67180937	T	G	780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.16;ReadPosRankSum=0.455;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,36:0.84:43
chr1	222825403	rs3002150	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	222825717	rs10495198	T	C	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:82,196:0.71:278
chr1	222825761	rs2936019	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr1	222826481	rs2291832	G	A	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:47,91:0.66:138
chr1	222832295	rs2291834	T	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr1	222833601	rs3002153	T	C	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr1	222837594	rs2270707	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	222837608	rs79024999	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr1	222838216	rs2936026	C	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	222846882	rs12138316	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr1	222860734	rs3008638	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	222886119	rs3811465	A	G	12416.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr1	222919854	rs111682421	CCT	C	90.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr1	222919895	rs2378607	T	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr1	222923001	rs2068814	A	G	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,69:0.69:100
chr1	222923351	rs6683071	A	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	223116109	rs75109669	C	T	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	223152868	rs1815607	G	A	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr1	223156382	rs2926159	C	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	223156406	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.000;QD=0.83;ReadPosRankSum=0.806;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:83,19:0.19:102
chr1	223178478	rs9441940	G	A	6971.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:154,302:0.66:456
chr1	223178561	rs9441941	A	C	19187.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr1	223283910	rs7512943	A	G	11204.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr1	223284069	rs56243703	G	A	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:253,129:0.34:382
chr1	223397037	rs851149	T	C	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:60,140:0.70:200
chr1	223441743	rs77730518	C	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:33,63:0.66:96
chr1	223715248	rs36108579	GT	G	1696.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:75,58:0.44:133
chr1	223716349	rs4072246	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.831;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=2.543;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:174,61:0.26:235
chr1	223717379	rs61823524	A	C	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr1	223717484	rs34158997	G	A	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:181,85:0.32:266
chr1	223718518	rs61823552	C	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=1.674;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr1	223718651	rs61823553	G	A	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.878;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:195,81:0.29:276
chr1	223718670	rs61823554	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=2.289;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:194,78:0.29:272
chr1	223718764	rs35808016	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,74:0.67:111
chr1	223722646	rs34630115	T	TA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.633;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr1	223722780	rs34606532	G	A	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=2.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.255;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:183,67:0.27:250
chr1	223728083	rs202073012	A	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	223799857	rs34786756	C	T	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:67,130:0.66:197
chr1	223799871	rs35116708	C	T	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:68,130:0.66:198
chr1	223805804	rs34893034	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr1	223807239	rs34693465	C	G	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:32,65:0.67:97
chr1	223807262	rs34900680	G	A	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr1	223813586	rs35539373	G	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.328;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:122,47:0.28:169
chr1	223814671	rs61825208	A	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr1	223814682	rs67990281	A	T	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chr1	223815575	rs34187970	G	A	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	223816322	rs66602040	A	G	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr1	223816347	rs61825210	A	G	7208.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr1	223830566	rs11584107	G	A	7111.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:166,328:0.66:494
chr1	223841913	rs11585533	C	A	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:62,160:0.72:222
chr1	223900408	rs25655	C	G	13688.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:1,506:1.00:507
chr1	223905532	rs17596	G	A	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:131,231:0.64:362
chr1	223931648	rs1222137	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	223934720	rs17600	G	A	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	223949158	rs6687003	G	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.628;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.157;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:64,29:0.31:93
chr1	223949314	rs28370127	G	C	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.080;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.033;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:280,89:0.24:369
chr1	223951985	rs737066	C	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:150,68:0.31:218
chr1	223954080	rs17599	A	C	3043.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:73,140:0.66:213
chr1	223954278	rs28370151	T	C	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:47,109:0.70:156
chr1	223959796	rs1153950	G	A	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:194,78:0.29:272
chr1	223959959	rs1153949	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-2.230;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:97,27:0.22:124
chr1	223980207	rs1153936	G	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.280;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:167,71:0.30:238
chr1	223984306	rs28364803	G	GA	63.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr1	223989966	rs1153933	C	T	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.783;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:263,93:0.26:356
chr1	224008913	rs3738370	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:74,31:0.30:105
chr1	224301749	rs6690695	C	T	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr1	224302154	rs3066024	T	TGAG	8449.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr1	224318151	rs3065998	T	TTTG	4858.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	224321984	rs1472167	C	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	224345012	rs7543762	G	A	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	224379893	.	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.351;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	224444628	rs10799556	C	T	14625.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr1	224444901	rs2897055	G	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	224468986	rs34156240	C	CGT	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=12.76;ReadPosRankSum=3.306;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr1	224482216	rs2404783	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	224492381	rs7522125	C	T	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr1	224492746	rs3754090	C	T	20530.77	.	AC=2;AF=1.00;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	1/1:0,788:1.00:788
chr1	224495852	rs7534447	C	T	8893.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr1	224505570	rs3066969	T	TAA	2913.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	224505719	rs4436353	T	G	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	224514275	rs4653578	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	224517842	rs2896990	C	T	7745.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr1	224517907	rs4146965	A	T	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	224544529	rs7517754	A	G	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	224600910	rs10916612	C	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.21;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	224600920	rs10916613	C	A	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.74;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	224621282	rs80059326	C	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr1	224621368	rs2405033	G	C	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	224926997	.	CTT	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.291;QD=8.74;ReadPosRankSum=0.610;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:16,24:0.60:40
chr1	224927217	rs3738362	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr1	225230608	rs2501107	C	T	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr1	225237850	rs2501086	A	C	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	225266966	rs3105559	C	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	225268343	rs3128651	A	G	10993.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=0.858;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr1	225268346	rs3128652	G	A	11042.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr1	225270409	rs3128655	A	T	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	225273248	rs3128658	G	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr1	225273633	rs3105565	T	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	225477491	rs12024361	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=0.955;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr1	225477546	rs12042076	A	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr1	225477793	rs12042900	T	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr1	225512481	rs200310916	G	A	6639.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:174,311:0.64:485
chr1	225555512	rs11578981	C	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.190;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:145,53:0.27:198
chr1	225555602	rs12737248	T	G	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=0.845;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:105,26:0.20:131
chr1	225562385	rs10915816	C	T	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.094;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:126,57:0.31:183
chr1	225565015	rs3856154	T	C	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:124,60:0.33:184
chr1	225565073	rs3856155	C	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:95,44:0.32:139
chr1	225569241	rs950210	T	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:75,26:0.26:101
chr1	225576058	rs6679430	T	C	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.587;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-3.632;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:126,46:0.27:172
chr1	225576311	rs10753405	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr1	225577648	rs12134158	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.410;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:82,26:0.24:108
chr1	225601647	rs3766928	C	T	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:302,126:0.29:428
chr1	225607144	rs2230419	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	225609884	rs1056608	A	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=4.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=1.514;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr1	225611661	rs1056607	C	T	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.788;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:223,78:0.26:301
chr1	225611845	rs1340867	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr1	225685621	rs145776060	TAAG	T	1030.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	225707271	.	GA	G	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.138;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr1	225840539	rs116481763	C	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr1	226016633	rs3738047	G	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr1	226019500	rs2234698	T	C	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr1	226019633	rs1051740	T	C	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:107,171:0.62:278
chr1	226019653	rs1131873	G	A	1646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=0.801;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:180,99:0.35:279
chr1	226019774	rs2260863	G	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	226027067	rs35708670	G	GGTGT,GGTGTGT	1274.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.000;QD=34.45;ReadPosRankSum=1.735;SOR=0.990;set=HC	GT:AD:AF:DP	1/2:5,13,19:0.35,0.51:37
chr1	226027659	rs2292568	C	T	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr1	226032018	rs56301120	G	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr1	226033030	rs4149230	G	C	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	226034774	rs2292559	C	T	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	226036309	rs360063	A	G	12196.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr1	226041438	rs2292556	C	T	8948.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr1	226043474	rs3738051	A	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	226043855	rs3766936	A	G	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	226044391	rs140423726	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr1	226044489	rs60955535	G	GC	1500.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	226044500	rs3215220	GC	G	1535.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	226044591	rs2292560	C	T	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr1	226044767	rs184619392	C	T	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:81,49:0.38:130
chr1	226046974	rs2292561	T	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	226048746	rs74150534	A	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	226049909	rs74150536	T	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	226050678	rs74229306	G	A	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr1	226054681	rs360085	T	A	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	226061956	rs2271544	G	A	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr1	226074373	rs3766941	C	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	226074985	rs2236143	T	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr1	226075473	rs77296604	C	G	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;MQ=59.07;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	226075558	rs191758097	C	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	226075708	rs145431393	A	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	226076669	rs41310561	C	T	4464.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr1	226108894	rs10915897	C	T	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.241;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:127,57:0.31:184
chr1	226111718	rs138311498	G	GCCGCCTC	9025.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=973;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=4.422;QD=11.32;ReadPosRankSum=0.200;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:544,253:0.32:797
chr1	226125543	rs60825997	G	GA	734.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	226127443	rs74578461	G	C	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:33,96:0.74:129
chr1	226127746	rs428237	C	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr1	226127789	rs201495449	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr1	226180813	rs151278173	TTTC	T	77.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.657;QD=1.85;ReadPosRankSum=0.027;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr1	226180816	rs61170616	C	CT	41.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.976;QD=0.85;ReadPosRankSum=2.433;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr1	226252232	rs2036870	C	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	226253316	rs1849032	G	T	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr1	226334578	rs1219666	G	A	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	226352498	rs2306120	T	G	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:317,149:0.32:466
chr1	226411317	rs10915962	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr1	226420412	rs145896802	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr1	226420722	rs2306119	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	226438449	rs6678137	T	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.37;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	226474132	rs10799347	G	A	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	226485327	rs11390947	A	AT	1663.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	226550924	rs747657	G	C	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:27,69:0.72:96
chr1	226553485	rs118165556	A	C	59.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.43;ReadPosRankSum=0.814;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	226553486	rs146042055	C	A	340.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.557;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.40;ReadPosRankSum=1.645;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	226553490	rs34917861	C	A	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.067;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.43;ReadPosRankSum=1.097;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	226553494	rs11378196	C	CA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.61;ReadPosRankSum=0.985;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr1	226555302	rs1136410	A	G	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:210,91:0.30:301
chr1	226556094	rs1805400	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr1	226566726	rs907190	A	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr1	226567172	rs2271345	A	C	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:49,71:0.59:120
chr1	226568005	rs61835379	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr1	226570840	rs1805415	T	C	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,74:0.75:99
chr1	226573364	rs1805414	A	G	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:379,161:0.30:540
chr1	226576270	rs2255403	A	G	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:178,90:0.34:268
chr1	226589709	rs2666428	C	T	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.923;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr1	226589958	rs1805404	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:97,33:0.25:130
chr1	226595647	rs907187	C	G	4347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.048;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:635,266:0.30:901
chr1	226836590	rs2298169	A	G	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr1	226923505	rs708776	G	T	11257.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr1	226923938	rs6667260	A	C	7040.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:158,296:0.65:454
chr1	226924642	rs3754415	C	T	8328.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:105,355:0.77:460
chr1	226924982	.	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	0/1:101,57:0.36:158
chr1	227069677	rs11405	T	C	3608.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:77,170:0.69:247
chr1	227069737	rs6759	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:33,89:0.73:122
chr1	227071364	rs1295643	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr1	227071377	rs1295644	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr1	227071525	rs1046240	C	T	4146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-2.342;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:67,191:0.74:258
chr1	227073410	rs2236910	G	C	6252.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:109,275:0.72:384
chr1	227078955	rs2802267	T	C	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:19,82:0.81:101
chr1	227079222	rs2236915	C	G	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr1	227081622	rs10753428	A	G	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:68,108:0.61:176
chr1	227081850	rs2855562	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:26,67:0.72:93
chr1	227085155	rs11802358	G	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr1	227149203	rs11549708	G	A	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:89,168:0.65:257
chr1	227165097	rs3806263	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:98,41:0.29:139
chr1	227170298	rs2297412	A	G	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr1	227171584	rs3215919	GT	G	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr1	227171736	rs149374145	G	GT	2405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=-0.573;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:41,62:0.60:103
chr1	227171738	rs377335668	G	T	2408.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.94;ReadPosRankSum=-0.484;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:42,63:0.60:105
chr1	227171739	rs1574185	G	C	867.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.651;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.593;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:69,43:0.38:112
chr1	227171958	rs7530213	G	C	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:59,92:0.61:151
chr1	227172290	rs12593	C	T	10946.77	.	AC=1;AF=0.500;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	0/1:219,491:0.69:710
chr1	227172518	rs1317490	C	T	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:43,94:0.69:137
chr1	227172762	.	C	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=1.330;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr1	227172903	rs2297415	G	A	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:37,86:0.70:123
chr1	227172935	rs2297416	C	G	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:56,132:0.70:188
chr1	227174122	rs41303131	C	G	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:64,127:0.66:191
chr1	227174145	rs7552783	T	C	4843.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:99,205:0.67:304
chr1	227174210	rs3738725	T	C	11389.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:243,527:0.68:770
chr1	227181923	rs3795451	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr1	227182033	rs2802269	G	A	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	227182179	rs61833999	C	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr1	227182575	rs1045247	A	G	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr1	227192579	rs2297418	A	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	227198775	rs12403978	C	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr1	227210820	rs11580229	G	A	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr1	227210888	rs11578479	A	T	1375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-0.263;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:30,61:0.67:91
chr1	227213968	rs7535826	G	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chr1	227216662	rs1929861	T	C	5774.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:84,247:0.75:331
chr1	227218069	rs5781458	C	CAT	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	227218085	rs34370338	CA	C	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.978;QD=9.74;ReadPosRankSum=0.053;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr1	227219314	rs1319103	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	227221251	rs12031609	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.531;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:79,24:0.23:103
chr1	227222515	rs113874316	G	GACAA	13863.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	227227740	rs12026688	A	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr1	227228037	rs10495270	A	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr1	227235832	.	TTAA	T	433.73	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr1	227239739	rs55865118	T	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.25;ReadPosRankSum=-0.600;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr1	227239746	rs10799381	G	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	227246890	rs59693176	C	CA	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.143;QD=3.62;ReadPosRankSum=0.142;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr1	227247016	rs10495266	G	C	3150.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:60,145:0.71:205
chr1	227247160	rs10495265	A	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr1	227259884	rs10495263	G	A	4671.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:80,217:0.73:297
chr1	227268488	rs1929853	T	G	2637.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:51,110:0.68:161
chr1	227288655	rs2104863	G	A	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	227289078	rs497291	A	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr1	227299978	rs2458521	C	T	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:72,146:0.67:218
chr1	227300277	rs488104	G	A	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	227330759	rs12139502	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.093;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:130,47:0.27:177
chr1	227333141	rs60079575	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr1	227335329	rs6685954	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr1	227348126	rs11800062	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	227381326	rs6696485	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr1	227381373	rs3768436	G	T	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr1	227381674	rs35780410	TA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.045;QD=3.65;ReadPosRankSum=0.400;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr1	227387143	rs3768435	A	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr1	227387361	rs3768434	A	G	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr1	227400792	rs1513612	A	T	420.22	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr1	227401072	rs67834063	GC	G	149.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	227834228	rs79145640	AT	A	5427.73	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:191,279:0.59:470
chr1	227842122	.	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.356;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:162,62:0.28:224
chr1	227920061	rs1060295	T	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr1	227920103	rs3087908	G	A	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,67:0.73:92
chr1	227920447	rs751748	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:30,82:0.73:112
chr1	227922918	rs2295994	A	C	9352.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:173,409:0.70:582
chr1	227923081	rs7419238	G	A	19990.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr1	227935280	rs2236361	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:31,80:0.72:111
chr1	227935355	rs2236360	T	C	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:133,244:0.65:377
chr1	227935444	rs2236359	A	G	7538.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:177,348:0.66:525
chr1	227963491	rs754224	G	T	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.226;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:28,54:0.66:82
chr1	227968107	rs10799448	G	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr1	228003839	rs79840641	C	T	5202.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:78,234:0.75:312
chr1	228033197	rs9426581	A	G	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr1	228033333	rs16848162	T	A	4591.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:95,208:0.69:303
chr1	228112121	rs4653889	A	G	2330.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:45,97:0.68:142
chr1	228113163	rs3795768	A	G	3924.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:70,180:0.72:250
chr1	228129197	rs631768	T	C	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:56,84:0.60:140
chr1	228285662	.	G	C	3011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826;ClippingRankSum=0.000;DP=578;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.458;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:390,185:0.32:575
chr1	228289843	rs1128456	C	T	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:16,56:0.78:72
chr1	228294300	rs12564763	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr1	228334418	rs3216021	GAT	G	2010.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,50:0.75:67
chr1	228334436	rs55873533	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr1	228352160	rs4348717	T	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr1	228353651	rs55873785	G	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.805;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:109,32:0.23:141
chr1	228362682	rs2298014	G	A	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:84,151:0.64:235
chr1	228391808	rs11800309	G	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:74,46:0.38:120
chr1	228399766	rs55971985	T	C	1766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=1.443;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:157,102:0.39:259
chr1	228400646	rs3121192	T	C	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.592;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:174,66:0.28:240
chr1	228400653	rs3121191	A	T	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.898;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:156,65:0.29:221
chr1	228402047	rs1620111	A	G	2692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=1.596;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:462,174:0.27:636
chr1	228402121	rs1771487	A	G	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.269;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:348,123:0.26:471
chr1	228402508	rs2776853	C	T	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:80,142:0.64:222
chr1	228404668	rs3795777	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:19,51:0.73:70
chr1	228405118	rs5781507	G	GA	569.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=1.481;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr1	228412106	rs1771482	T	C	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:35,123:0.78:158
chr1	228412227	rs1771480	TG	CA	9655.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;JOINED;set=Intersection	GT:AD:AF:DP	0/1:74,237:0.76:311
chr1	228412308	rs1757152	G	A	4857.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:92,194:0.68:286
chr1	228431095	rs1771455	A	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	228431235	rs11584385	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr1	228431930	rs10916293	C	T	11632.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr1	228432987	rs1757129	G	C	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr1	228433217	rs2487384	A	G	7562.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr1	228434395	rs7517088	T	C	9095.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr1	228434467	rs7517108	T	C	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr1	228437603	rs6426494	T	C	8397.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr1	228438045	rs12737540	G	A	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,36:0.35:104
chr1	228444297	rs7532141	T	G	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:77,178:0.70:255
chr1	228444318	rs7532144	T	G	8510.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	228444565	rs7532342	T	A	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr1	228444741	rs3795780	C	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	228447513	rs7525075	T	G	5694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.92;ReadPosRankSum=0.423;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:59,145:0.71:204
chr1	228447519	rs7525078	T	A	5443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.50;ReadPosRankSum=0.322;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:57,134:0.70:191
chr1	228451826	rs453140	C	T	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:337,140:0.29:477
chr1	228456147	rs878388	T	C	13405.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr1	228461129	rs1188724	A	G	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr1	228461408	rs11398292	A	AG	4952.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr1	228463433	rs510931	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr1	228464248	rs1188721	T	G	7550.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr1	228464276	rs1188722	T	C	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr1	228464842	rs936885	C	G	13135.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr1	228465346	rs493945	A	G	6316.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:157,295:0.65:452
chr1	228465370	rs867599	T	G	11113.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr1	228466750	rs3795782	T	C	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:27,100:0.79:127
chr1	228468458	rs1188697	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:116,62:0.35:178
chr1	228470995	rs1150906	G	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.387;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=6.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.707;SOR=1.408;set=HC	GT:AD:AF:DP	0/1:100,36:0.26:136
chr1	228471046	rs41303079	C	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr1	228471379	rs56168609	G	C	6475.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:157,293:0.65:450
chr1	228475848	rs437129	G	A	3254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.444;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:508,194:0.28:702
chr1	228480282	rs1150908	A	G	16440.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr1	228480964	rs10158357	A	G	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr1	228482010	rs449133	C	T	20046.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr1	228482285	rs1150909	T	C	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	228492044	rs1150910	G	A	17839.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,671:1.00:671
chr1	228494382	rs1150911	T	G	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,305:1.00:306
chr1	228494790	rs435776	G	A	9851.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr1	228495696	rs419173	T	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	228497053	rs379620	A	G	8974.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr1	228503677	rs1150912	A	G	13231.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr1	228504472	rs1188732	T	C	5580.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr1	228504670	rs11810627	C	T	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr1	228504701	rs111792077	G	GCTCC	1945.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr1	228505668	rs1188729	C	G	9149.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr1	228505699	rs1188728	T	C	10730.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr1	228509427	rs373610	A	G	14642.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr1	228520763	rs384553	G	A	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	228520880	rs416564	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	228520973	rs369909	C	G	4600.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	228522029	rs57891072	TA	T	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	228522047	rs520552	A	T	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	228523005	rs60787858	T	TG	436.37	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	228523042	rs55678904	T	TG	117.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	228523442	rs1684868	T	C	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.64;SOR=1.239;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr1	228523447	rs10799473	TG	CA	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr1	228523618	rs1757160	G	A	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr1	228524919	rs3795807	G	A	12818.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr1	228524961	rs3795808	C	A	16528.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr1	228525627	rs1757127	C	A	7578.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr1	228525898	rs1188717	C	G	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	228526486	rs58480216	G	A	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr1	228526665	rs505629	T	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	228528412	rs1150916	G	A	17336.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr1	228528563	rs1188710	C	G	10520.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr1	228529429	rs141828109	A	AGACGGCTCAGCCAGCCTGTGGCATGG	2120.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	228560139	rs498382	A	G	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:80,145:0.64:225
chr1	228566151	.	C	CCCCGCCCCCTCCTCCCGT	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=3.245;MLEAC=1;MLEAF=0.500;MQ=61.16;MQRankSum=2.136;QD=18.46;ReadPosRankSum=1.229;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr1	228612838	rs2230656	G	T	13576.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr1	228613052	rs1188474	T	C	8745.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	228645063	rs10916317	A	G	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:65,145:0.69:210
chr1	228646356	rs144766104	CGT	C	192.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr1	228681749	rs3795817	C	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr1	228699477	rs6665115	T	C	12892.77	.	AC=1;AF=0.500;AN=2;DB;DP=846;set=Intersection	GT:AD:AF:DP	0/1:257,588:0.70:845
chr1	228785805	rs10916348	C	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr1	229385658	.	CCTCT	C	4871.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=5.025;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-2.520;QD=22.55;ReadPosRankSum=-0.389;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:84,132:0.61:216
chr1	229385669	rs71561726	TTC	T	2060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=8.403;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=3.772;QD=9.24;ReadPosRankSum=0.688;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:148,75:0.34:223
chr1	229407233	rs7519709	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr1	229422088	rs237763	A	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.083;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr1	229422193	rs237764	T	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	229438530	.	C	CT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.170;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr1	229438828	rs237787	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	229461024	rs2282083	C	T	5253.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:133,243:0.65:376
chr1	229477725	.	GA	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.168;QD=0.27;ReadPosRankSum=-1.772;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:158,34:0.18:192
chr1	229567660	rs201427429	C	CG	2967.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;MQ=60.46;set=Intersection	GT:AD:AF:DP	0/1:50,118:0.70:168
chr1	229567663	rs6673359	C	G	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:48,132:0.73:180
chr1	229567683	rs59228224	TC	T	3233.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:38,95:0.71:133
chr1	229568231	rs527621	T	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=27.76;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr1	229568243	.	C	CGGCGGG	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=-0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.000;QD=15.73;ReadPosRankSum=-0.824;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr1	229568632	rs11803533	A	G	23926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=881;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=0.685;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:274,604:0.69:878
chr1	229568637	rs41271481	C	G	23723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DB;DP=854;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.88;ReadPosRankSum=0.332;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:266,585:0.69:851
chr1	229568934	rs57214022	AG	A	1537.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr1	229580593	rs67514588	C	CA	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.001;QD=8.27;ReadPosRankSum=0.592;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr1	229596260	rs1328219	A	G	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr1	229599225	rs7525324	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr1	229600336	rs2904	A	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr1	229602284	rs7555749	C	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr1	229622162	rs1065675	A	G	8964.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:229,414:0.64:643
chr1	229623131	rs6678721	G	C	3402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.38;ReadPosRankSum=2.363;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:30,82:0.73:112
chr1	229623137	rs4925493	T	C	3569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.79;ReadPosRankSum=0.422;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:30,94:0.76:124
chr1	229623338	rs1065674	T	C	3163.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:69,150:0.68:219
chr1	229623409	rs10653575	A	ATTTG	1222.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr1	229631193	rs3818237	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.54;ReadPosRankSum=-0.777;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr1	229631734	rs11805194	T	C	1850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-3.408;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:40,90:0.69:130
chr1	229635521	rs10916495	A	G	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:102,205:0.67:307
chr1	229636388	rs6673421	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	229636441	rs192379186	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr1	229637645	rs754022	C	A	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:30,87:0.74:117
chr1	229637881	rs2381108	T	G	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:74,200:0.73:274
chr1	229663064	rs113712941	GAGGAA	G	5143.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	229683264	rs3738187	G	A	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,42:0.76:55
chr1	229693846	rs4148757	A	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr1	229730452	rs2295625	G	A	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:338,147:0.30:485
chr1	229738170	rs3753886	T	G	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.347;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:213,72:0.25:285
chr1	229738236	rs4925500	G	A	8243.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr1	229746019	rs2273573	C	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:97,58:0.37:155
chr1	229750036	rs7547607	C	T	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:96,182:0.65:278
chr1	229750343	rs2273574	T	G	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:144,77:0.35:221
chr1	229768297	rs1473719	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.642;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr1	229772693	rs3811473	T	G	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:180,88:0.33:268
chr1	229781532	rs881694	T	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	229781744	rs2274994	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:175,69:0.28:244
chr1	229783236	rs6587349	T	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.43;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr1	229783236	.	TTATT	CTATC,CTATT	1651	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=30,87;NR=15,45;PP=498,1651;QD=12.2548416636;SC=CATTTTTCCTTTATTTTATTT;SbPval=0.61;Source=Platypus;TC=133;TCF=87;TCR=46;TR=45,132;WE=229783248;WS=229783226;set=Platypus	GT:AF:DP	0/1:0.34:133
chr1	229783240	rs2274995	T	C	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=2.143;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:104,56:0.35:160
chr1	229787055	rs41310553	G	A	4605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.615;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:95,214:0.69:309
chr1	230313911	rs678050	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.769;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:136,61:0.31:197
chr1	230371883	rs3811488	G	A	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:46,82:0.64:128
chr1	230384970	rs1923950	G	A	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-0.341;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:42,87:0.67:129
chr1	230386341	rs2273966	T	A	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:70,148:0.68:218
chr1	230410162	rs12091838	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:36,112:0.76:148
chr1	230415025	rs6698963	A	G	8871.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr1	230451846	.	T	A	68	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=4;MGOF=25;MMLQ=26;MQ=59.02;NF=5;NR=0;PP=68;QD=20.5542425094;SC=ATACATATGTTTATGTGTACA;SbPval=1.0;Source=Platypus;TC=12;TCF=12;TCR=0;TR=5;WE=230451854;WS=230451822;set=Platypus	GT:AD:AF:DP	1/0:7,5:0.42:12
chr1	230451864	.	C	G	73	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=35;MMLQ=25;MQ=59.23;NF=6;NR=0;PP=73;QD=17.9618687579;SC=ACACATATATCTATGTGTATA;SbPval=1.0;Source=Platypus;TC=16;TCF=16;TCR=0;TR=6;WE=230451872;WS=230451854;set=Platypus	GT:AD:AF:DP	0/1:10,6:0.38:16
chr1	230451864	.	C	CTATGTGTATACATACATATGTATATGTGTACACATATATG	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-1.282;QD=22.07;ReadPosRankSum=-0.253;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,2:0.20:10
chr1	230451935	rs144363709	C	CAT	2687.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	230451978	rs11122492	G	A	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	230459433	rs35048134	GC	G	814.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr1	230461079	rs2306813	G	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.603;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:154,43:0.22:197
chr1	230473103	rs10864744	A	C	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	230497940	rs828479	G	T	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:134,60:0.31:194
chr1	230498196	rs76196701	C	T	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:32,95:0.75:127
chr1	230498232	rs2820384	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.851;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.380;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr1	230503684	rs2632571	C	T	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr1	230513128	rs828463	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-1.696;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	230778491	rs4846864	G	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:58,113:0.66:171
chr1	230814668	rs11558606	A	G	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:55,139:0.72:194
chr1	230819479	rs5781597	G	GT	1225.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.768;MLEAC=2;MLEAF=1.000;MQ=60.76;MQRankSum=0.825;QD=16.13;ReadPosRankSum=-0.085;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:7,69:0.91:76
chr1	230820763	rs150768186	C	CACATT	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.662;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr1	230820780	rs3215851	TA	T	1741.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:24,71:0.75:95
chr1	230822607	rs1536591	G	A	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr1	230825942	rs3000064	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.010;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr1	230828966	rs41314282	T	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:112,45:0.29:157
chr1	230828987	rs2478534	C	A	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.151;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:155,59:0.28:214
chr1	230841559	rs3827749	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr1	230841687	rs7080	T	C	10011.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr1	230883484	rs6690251	T	C	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr1	230883499	rs6690254	T	C	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	230907799	rs28359655	C	T	7870.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:158,348:0.69:506
chr1	230914706	rs1933630	C	A	2855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.20;ReadPosRankSum=1.318;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:34,75:0.69:109
chr1	230914729	rs1933631	A	C	2895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.96;ReadPosRankSum=0.487;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:38,78:0.67:116
chr1	230916162	.	G	A	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=3.499;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=1.912;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:111,37:0.25:148
chr1	230916260	rs28359687	C	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:22,72:0.77:94
chr1	230923151	rs2297830	T	C	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,59:0.74:80
chr1	230923187	rs12731671	C	G	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:44,112:0.72:156
chr1	230923313	rs12731961	C	T	4195.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:65,193:0.75:258
chr1	230928512	rs7522057	C	G	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:58,147:0.72:205
chr1	230975454	rs1202550	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	231042732	rs3811502	T	A	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:51,113:0.69:164
chr1	231047143	rs6699285	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.079;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr1	231047310	rs10580953	TAC	T	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	231047392	rs2153049	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	231057287	rs9432260	A	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr1	231057310	rs2275334	C	T	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	231059784	rs3748774	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	231060736	rs3748775	T	C	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:59,130:0.69:189
chr1	231064578	rs5781609	T	TCTC	1614.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	231064611	rs950029	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr1	231067236	rs11122624	C	T	4495.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:94,203:0.68:297
chr1	231067318	rs11122625	G	T	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:24,62:0.72:86
chr1	231069348	rs9431601	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr1	231069652	rs1890351	A	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr1	231071876	rs12131329	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr1	231081304	rs6673085	T	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr1	231353589	rs4658907	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.810;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:101,35:0.26:136
chr1	231362923	rs491182	G	A	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:147,91:0.38:238
chr1	231376806	rs2274067	G	C	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=1.730;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:278,105:0.27:383
chr1	231377081	rs518686	C	T	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:266,114:0.30:380
chr1	231400905	rs849714	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr1	231401204	rs6702011	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:93,44:0.32:137
chr1	231401596	rs532226	T	C	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,66:0.32:207
chr1	231401902	rs574553	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.432;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:170,47:0.22:217
chr1	231471268	rs35468792	AT	A	516.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr1	231502230	rs371155853	TA	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=1.858;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:68,25:0.27:93
chr1	231664607	rs41303127	C	T	1923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.351;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:62,89:0.59:151
chr1	231697030	rs1982095	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr1	231830295	rs3738401	G	A	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.506;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.132;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:407,139:0.25:546
chr1	231936016	rs2759354	A	G	9133.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr1	231954872	rs11588937	C	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.44;ReadPosRankSum=-2.232;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr1	231956086	rs11122343	A	T	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.791;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr1	232094729	rs2794273	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	232098847	rs12754734	C	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	232098859	rs4266866	C	G	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	232144598	rs821616	A	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr1	232144887	rs821617	A	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr1	232172374	rs17773715	G	A	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:52,113:0.68:165
chr1	232534776	rs586719	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	232534957	rs12043251	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:134,54:0.29:188
chr1	232535030	rs629939	C	T	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr1	232538234	rs17177525	T	G	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:42,110:0.72:152
chr1	232551416	rs12569188	G	A	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:89,220:0.71:309
chr1	232564096	rs34949132	CT	C	219.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=7.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=1.189;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr1	232564297	rs3210731	T	A	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:64,149:0.70:213
chr1	232568293	rs1547741	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr1	232574921	rs2275307	T	C	4732.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:116,219:0.65:335
chr1	232577281	rs573140	T	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr1	232579597	rs4649372	T	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr1	232581247	rs1409369	C	G	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=0.490;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr1	232581436	rs12757779	G	A	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.37;ReadPosRankSum=-1.246;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:26,68:0.72:94
chr1	232581667	rs12723697	G	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr1	232596814	.	C	T	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DP=623;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=1.566;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:446,176:0.28:622
chr1	232597987	rs12142629	T	A	6116.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:116,275:0.70:391
chr1	232601241	rs12145798	T	C	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,55:0.76:72
chr1	232601261	rs34840482	CAT	C	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr1	232607050	rs12116796	T	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr1	232607094	rs12116822	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:35,70:0.67:105
chr1	232629170	rs11294872	TA	T	2607.73	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:85,152:0.64:237
chr1	232629475	rs3737839	C	T	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr1	232650750	rs3795366	A	G	13439.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr1	232650867	rs4649383	C	T	20564.77	.	AC=2;AF=1.00;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr1	233086456	rs13381	T	C	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:384,168:0.30:552
chr1	233113827	rs1045158	G	T	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.534;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.142;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:142,53:0.27:195
chr1	233121791	rs12038915	G	A	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=10.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.139;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:108,37:0.26:145
chr1	233122127	rs41309639	C	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=3.119;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:74,48:0.39:122
chr1	233137225	rs140788891	CATAA	C	3059.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr1	233152910	rs11271054	A	AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=2.245;SOR=2.016;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr1	233296891	rs2296515	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr1	233296908	rs2296516	T	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr1	233336044	rs12024129	T	A	942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.931;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.793;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.574;QD=3.80;ReadPosRankSum=2.564;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:185,63:0.25:248
chr1	233362930	rs701176	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:125,57:0.31:182
chr1	233395214	rs2139998	T	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr1	233489499	rs7539016	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	233489529	rs7549137	G	A	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	233489707	rs7551511	G	T	4105.22	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.911;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=0.036;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:18,185:0.91:203
chr1	233490536	rs137943316	A	AATGTCTTGGGGATAATCTG	7402.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr1	233490543	rs2049182	G	A	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr1	233490764	rs4649219	G	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr1	233490776	rs4649220	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,30:0.33:90
chr1	233498026	rs56052041	C	T	3061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.51;ReadPosRankSum=-0.584;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:71,140:0.66:211
chr1	233511913	rs35806537	TAGAG	T	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=-1.444;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr1	233515413	rs1402815	G	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:226,112:0.33:338
chr1	233749855	rs2795294	A	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr1	233749896	rs140745317	C	CTTGGCTTTGGCT	1773.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr1	233785716	rs17814096	T	G	4467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-0.808;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:74,202:0.73:276
chr1	233785786	rs4649241	A	C	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.746;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:142,55:0.28:197
chr1	234040742	rs12136133	A	C	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:60,117:0.66:177
chr1	234041422	rs57010808	G	C	12868.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:231,583:0.72:814
chr1	234442376	rs674385	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	234444761	rs11359233	TA	T,TAAAAA	681.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.60;MQRankSum=0.838;QD=13.11;ReadPosRankSum=-1.624;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:9,31,12:0.60,0.23:52
chr1	234458668	rs35870005	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr1	234509259	rs10910420	G	C	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr1	234510262	rs4300255	A	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr1	234519385	rs10797539	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr1	234519452	rs58896934	C	CT	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr1	234527575	rs3862040	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	234528006	rs3754317	A	G	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr1	234528087	.	C	CA	1001.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=4.787;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.223;QD=3.68;ReadPosRankSum=-1.155;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:189,83:0.31:272
chr1	234529552	rs2175594	C	T	4120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.68;ReadPosRankSum=0.938;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:58,109:0.65:167
chr1	234529570	rs2175593	G	A	4127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=0.284;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:49,105:0.68:154
chr1	234546245	rs1141264	C	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-0.530;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,76:0.67:113
chr1	234546354	rs41266235	C	T	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=1.024;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:60,33:0.35:93
chr1	234564951	rs12135427	A	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.307;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr1	234603451	rs6657924	A	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr1	234606799	rs6694349	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr1	234607055	rs10713847	TG	T	3748.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	234607086	rs6687548	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr1	234607104	rs6697027	C	T	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	234608725	rs34245359	A	ATT	119.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	234613860	rs12082841	A	G	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:54,101:0.65:155
chr1	234614698	rs941965	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.960;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=0.212;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr1	234614879	rs941966	C	A	325.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.17;ReadPosRankSum=-0.404;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr1	234744480	rs11502	G	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr1	234745009	rs7545855	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-1.194;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:90,27:0.23:117
chr1	235285740	rs4659823	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr1	235299492	rs61837172	C	T	2507.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:395,162:0.29:557
chr1	235301496	rs367780945	CA	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.480;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:70,36:0.34:106
chr1	235316185	rs11351017	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.21;ReadPosRankSum=0.423;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	235357303	rs34768226	A	ATG	2029.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr1	235357314	rs35180803	AT	A	1887.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr1	235357543	rs10802438	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr1	235383188	rs4659654	A	G	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:47,70:0.60:117
chr1	235384838	rs12117563	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr1	235388178	rs116749491	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr1	235392546	rs12731746	T	C	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-1.134;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:78,150:0.66:228
chr1	235394541	rs7518225	A	C	261.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	235397937	rs35818300	GCA	G	411.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr1	235420493	rs61740940	G	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=2.028;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:97,56:0.37:153
chr1	235490391	rs3840452	CA	C	1161.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr1	235505313	rs3841735	A	AT	1809.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:28,89:0.76:117
chr1	235543476	rs10524346	TTGTGTGTGTGTGTGTGTGTGTG	T,TTGTGTGTGTGTGTGTG	2398.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;QD=30.36;SOR=2.746;set=HC	GT:AD:AF:DP	1/2:0,32,47:0.41,0.59:79
chr1	235590559	rs12757197	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:174,66:0.28:240
chr1	235594182	rs2291687	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	235601958	rs3819974	G	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr1	235612219	rs7537	T	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:87,36:0.29:123
chr1	235616309	rs6702967	T	C	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.926;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.043;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:164,65:0.28:229
chr1	235628908	rs1305556	G	A	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,68:0.64:107
chr1	235647631	rs291387	G	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr1	235652513	rs291396	T	C	7344.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:163,329:0.67:492
chr1	235667690	rs291348	A	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,37:0.88:42
chr1	235715523	rs14326	A	G	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:65,152:0.70:217
chr1	235715556	rs423026	C	G	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:38,98:0.72:136
chr1	235715601	rs400948	A	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr1	235747005	rs2774335	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr1	235747154	rs2774336	A	G	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:73,163:0.69:236
chr1	235826382	rs36014994	TA	T	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:8,40:0.83:48
chr1	235827443	rs3819013	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	235827641	rs12092604	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	235856901	rs3754232	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	235860340	rs7541057	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr1	235887276	rs6667717	G	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr1	235896726	rs6429275	C	T	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	235910392	rs6676149	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr1	235910542	rs3754234	C	T	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	235918688	rs149138177	CAAAAG	C	3511.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.45;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	235922228	rs3738519	T	C	3290.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr1	235940450	rs2273584	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	235945294	rs6696123	T	C	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	235972435	rs3820553	T	C	12896.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr1	235972867	rs1063128	T	C	13337.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr1	236142565	rs1536132	T	C	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	236175327	rs3738531	C	A	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,93:0.61:152
chr1	236175339	rs2031487	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:63,101:0.62:164
chr1	236180580	rs3768081	C	G	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:41,81:0.66:122
chr1	236187365	rs3738533	T	C	2540.78	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:11,105:0.91:116
chr1	236205121	rs4297282	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,45:0.73:62
chr1	236208688	rs10733131	AT	GA	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr1	236208773	rs10733133	C	T	4740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=0.945;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:91,212:0.70:303
chr1	236209024	rs3768088	C	G	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:47,96:0.67:143
chr1	236209081	rs3768089	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr1	236212038	rs6665008	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,56:0.58:97
chr1	236393654	rs2812471	A	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr1	236395979	rs11388266	C	CT	328.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.26;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr1	236413230	rs2477599	T	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr1	236433135	rs3834089	AT	A	2426.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr1	236444879	rs11281666	G	GGCCCGGCCCT	936.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr1	236557771	rs966365	G	A	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	236557928	rs966364	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	236577762	rs61021118	C	CT	82.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	236590675	.	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.015;QD=0.42;ReadPosRankSum=0.819;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:77,17:0.18:94
chr1	236645670	rs604070	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:218,99:0.31:317
chr1	236700673	rs62670060	GAGC	G	1300.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	236700807	rs1126407	T	A	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr1	236700823	rs1041934	T	C	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.40;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr1	236700857	rs1041935	C	T	8261.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr1	236700982	rs2737706	T	C	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr1	236702153	rs2244808	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236702209	rs1041936	CA	TG	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	236702374	rs2472126	G	A	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr1	236702447	rs12744425	T	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	236702450	rs12744427	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	236702475	rs11807205	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	236702497	rs111502141	AGTTT	A	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	236702517	rs11807542	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	236703700	rs2244659	A	G	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr1	236703734	rs2243405	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	236703767	rs2758994	C	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236703832	rs34818366	CG	C	2436.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr1	236704888	.	A	AACAGGT	592.73	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	236704891	.	TAAA	T	592.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236704897	.	ATT	A	592.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr1	236706352	rs2758174	A	C	7151.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr1	236706371	rs2758175	A	G	5521.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr1	236706425	rs2244267	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr1	236706671	rs2243530	T	A	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236706780	rs2243527	C	T	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr1	236706862	rs2243525	G	C	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	236707007	rs2799410	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr1	236707036	rs2794786	A	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=1.963;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr1	236707045	rs2799409	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	236708022	rs5781896	GT	G	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:7,55:0.89:62
chr1	236708224	rs2244063	A	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	236708316	rs2758181	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	236708357	rs60495052	C	CCCTT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	236711297	rs2254823	A	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	236711323	rs15701	T	C	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr1	236711586	rs1160	G	A	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr1	236714064	rs6989	A	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr1	236714292	rs373763274	T	TA,TAA	1418.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.457;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.212;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.000;QD=13.77;ReadPosRankSum=0.631;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:20,28,55:0.27,0.53:103
chr1	236714335	rs2254487	C	T	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	236716741	rs1475132	G	A	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	236716959	rs2275685	C	T	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	236717104	rs2275686	A	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	236717926	rs2275687	T	C	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr1	236718524	rs6668848	G	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	236718561	rs6668926	G	A	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr1	236718620	rs1126627	T	C	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr1	236719135	rs1885532	T	C	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr1	236719193	rs1885533	A	G	9753.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr1	236719259	rs1885534	G	A	12826.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr1	236720761	rs2799404	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	236721610	rs2275688	G	A	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr1	236721660	rs2275689	T	C	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr1	236721731	rs819431	T	C	8939.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr1	236721780	rs16833884	C	T	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=4.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.200;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:242,73:0.23:315
chr1	236722182	rs819432	A	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	236722489	rs2146122	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr1	236723177	rs10754576	GC	AA	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	236724504	rs1077439	G	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	236724605	rs1077438	G	T	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr1	236724715	rs1077437	T	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr1	236724766	rs1077436	C	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	236729867	rs2758172	C	T	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr1	236732198	rs12135604	C	A	828.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.63;ReadPosRankSum=2.222;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr1	236732199	.	A	AC	502.80	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=3.394;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr1	236735939	rs2853602	T	C	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	236739416	rs2115740	C	T	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr1	236740039	rs6658793	G	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr1	236744424	rs35257076	A	AT	823.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr1	236744712	rs4518892	C	A	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.94;SOR=1.683;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr1	236746275	rs2794769	G	C	5736.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr1	236746443	rs2794768	C	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr1	236748505	rs1006456	T	C	24607.77	.	AC=2;AF=1.00;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	1/1:0,933:1.00:933
chr1	236748630	rs1006455	C	T	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=4.525;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr1	236748636	rs1006454	G	A	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=5.918;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr1	236749022	rs10925166	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	236749026	rs10925167	T	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.17;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	236749348	rs2794764	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr1	236749451	rs3831993	TA	T	538.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	236749649	rs2794763	T	C	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr1	236749817	rs2799420	C	T	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr1	236751519	rs34200005	GA	G	858.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	236755170	rs2794760	G	T	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr1	236755427	rs2794759	A	G	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	236755690	rs2794758	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	236755814	rs2794757	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	236755837	rs2564739	C	T	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr1	236755937	rs67239913	TA	T	482.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr1	236757200	rs2564738	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	236757229	rs2794754	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	236757507	rs2794753	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr1	236758887	rs2794751	T	C	10238.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr1	236759060	rs2794750	T	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr1	236767072	rs1529540	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	236767176	rs1529541	C	G	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=45.21;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr1	236767178	rs375752396	AG	A	1169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.414;QD=10.73;ReadPosRankSum=0.003;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:30,79:0.72:109
chr1	236767182	rs6650089	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=-1.128;QD=0.54;ReadPosRankSum=1.228;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:97,20:0.17:117
chr1	236767330	rs10802551	A	G	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr1	236881403	rs2275399	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	236882110	rs1341865	G	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr1	236882303	rs1341864	T	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr1	236883240	rs1768053	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	236883421	rs1341863	C	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	236883564	rs1341862	G	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr1	236890781	rs1768056	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	236897633	rs707203	A	G	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr1	236899899	rs11355106	TC	T	5731.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	236900018	rs7542508	G	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr1	236900598	rs7521191	C	T	35.74	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	236902532	.	AT	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=3.521;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.44;ReadPosRankSum=1.294;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:107,25:0.19:132
chr1	236902560	rs7527525	C	T	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr1	236902594	rs2288601	C	G	11070.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr1	236902865	rs2288602	A	C	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr1	236902955	rs7544174	T	C	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr1	236914610	rs3738545	G	C	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr1	236924506	rs2282366	A	G	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr1	236958532	rs28372871	G	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr1	236978992	rs5781924	T	TTCTG	8912.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr1	236988593	rs5781926	A	AT	3464.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:71,156:0.69:227
chr1	237001926	rs3820568	A	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr1	237013550	rs146375090	AT	A	1552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.83;ReadPosRankSum=-1.523;SOR=1.258;set=HC	GT:AD:AF:DP	0/1:30,38:0.56:68
chr1	237013553	rs200399202	T	A	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.39;ReadPosRankSum=-2.167;SOR=1.631;set=HC	GT:AD:AF:DP	0/1:31,42:0.58:73
chr1	237023333	rs10925254	T	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	237037998	.	CTTT	C	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.182;QD=4.41;ReadPosRankSum=0.120;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:37,38:0.51:75
chr1	237048500	rs1805087	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.533;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:91,20:0.18:111
chr1	237048562	rs2275566	G	A	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr1	237049879	rs12065382	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr1	237054569	rs2229276	A	G	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:36,83:0.70:119
chr1	237057608	rs2297965	G	A	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr1	237058744	rs12070777	C	A	4565.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:86,207:0.71:293
chr1	237058828	rs1131449	C	T	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr1	237058996	rs75739277	C	CTATT	705.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	237060433	rs3820571	G	T	6130.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	237060945	rs67705775	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.426;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr1	237061056	rs2853522	A	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr1	237063335	rs1050996	G	C	8381.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr1	237063504	rs9779	A	G	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,83:0.75:111
chr1	237551241	rs71561868	G	GTC	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr1	237551376	rs10754602	T	A	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,60:0.65:93
chr1	237580606	rs6673182	G	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=5.031;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr1	237580612	rs6673187	G	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr1	237617612	rs75144658	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr1	237617757	rs3765097	C	T	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr1	237619875	rs60132900	AT	A	2012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.866;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.483;QD=9.91;ReadPosRankSum=-0.418;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:57,146:0.72:203
chr1	237620049	rs2045955	T	C	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.169;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.569;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:177,53:0.23:230
chr1	237632285	rs35662567	A	AT	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr1	237632595	rs71561877	T	TGTG	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr1	237670140	rs2618702	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:96,53:0.36:149
chr1	237675163	rs67622164	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr1	237693610	rs34521733	C	CA	696.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.441;QD=4.58;ReadPosRankSum=0.178;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:88,64:0.42:152
chr1	237693921	rs2779365	A	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	237711644	rs2618661	T	C	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr1	237711797	rs2253273	A	G	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	237730124	rs2805390	A	G	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	237730169	rs2779401	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr1	237778084	rs3766871	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr1	237794603	rs1759123	A	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr1	237794913	.	ATTTTTTTTTTTT	A	538.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-1.279;QD=29.93;ReadPosRankSum=1.550;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr1	237794986	.	T	TGAA	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.67;MQRankSum=-0.897;QD=34.89;ReadPosRankSum=-0.764;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	237794989	.	ACG	A	418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.07;MQRankSum=-0.707;QD=34.89;ReadPosRankSum=-2.063;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr1	237796759	rs10925478	G	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr1	237796837	rs10802626	G	A	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr1	237797082	rs1967579	T	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr1	237797103	rs1967580	C	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr1	237798450	rs3736543	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr1	237801770	rs707189	T	C	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr1	237802559	rs530109	T	C	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr1	237813126	rs625006	A	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr1	237814783	rs684923	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr1	237814898	rs2184014	C	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr1	237817514	rs3831940	GA	G	896.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr1	237817784	rs669375	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr1	237819014	rs515474	C	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr1	237819090	.	A	AT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.053;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:99,22:0.18:121
chr1	237821109	rs607785	T	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr1	237823476	rs1342834	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr1	237824332	rs471647	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	237831103	rs477245	C	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr1	237841390	rs34967813	A	G	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.221;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr1	237850666	rs41267515	C	T	561.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.406;MLEAC=1;MLEAF=0.500;MQ=61.10;MQRankSum=2.538;QD=5.11;ReadPosRankSum=1.732;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:64,46:0.42:110
chr1	237862164	rs1521745	G	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr1	237862436	rs1521744	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=1.656;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr1	237863439	rs12754190	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.794;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr1	237863718	rs2797436	T	G	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr1	237863790	.	G	GT	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.595;QD=0.95;ReadPosRankSum=-0.683;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr1	237865203	rs939699	C	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	237872714	rs35261418	GT	G	1326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.801;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.294;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.920;QD=12.17;ReadPosRankSum=1.067;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:22,87:0.80:109
chr1	237881770	rs2797441	C	T	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr1	237890437	rs2685301	C	T	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr1	237893674	rs2797445	C	T	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr1	237905570	rs71656371	C	CT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.578;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr1	237923053	rs2253831	C	T	3409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-0.118;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:96,166:0.63:262
chr1	237923243	rs3817436	A	G	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:57,106:0.65:163
chr1	237924114	rs6143694	C	CAATGAATGGAGACATGT	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.39;ReadPosRankSum=0.108;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr1	237944814	rs12135982	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr1	237951451	rs2256242	A	G	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:76,43:0.36:119
chr1	237951482	rs16835818	G	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr1	237955666	.	T	TGTGTGTGCGCGC	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=-0.000;DP=52;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.24;ReadPosRankSum=0.568;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr1	237957146	rs790902	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr1	237957161	rs790901	A	G	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=5.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=1.015;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:36,67:0.65:103
chr1	237957309	rs790900	A	C	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:61,120:0.66:181
chr1	237958750	rs35572672	A	AT	106.75	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr1	237993724	rs2275692	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr1	238045590	.	C	T	31	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=31;QD=21.9237375157;SC=GTATCAGTTTCTATTCTATTC;SbPval=1.0;Source=Platypus;TC=16;TCF=16;TCR=0;TR=3;WE=238045598;WS=238045580;set=Platypus	GT:AD:AF:DP	0/1:13,3:0.19:16
chr1	238045995	rs2275694	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:66,37:0.36:103
chr1	238046228	rs79981930	A	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr1	238046253	rs2794814	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.37;ReadPosRankSum=1.531;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr1	238048325	rs2298100	A	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	238051933	rs2236595	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.586;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	238053524	rs538499	T	C	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.916;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-0.047;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr1	240255203	rs12727981	G	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr1	240255568	rs140531536	GGGC	G	1272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-1.558;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:80,38:0.32:118
chr1	240256822	rs10926124	C	A	1839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.888;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=14.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=1.738;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:245,93:0.28:338
chr1	240286773	rs3820506	C	G	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr1	240341119	rs3765590	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr1	240341164	rs3765589	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr1	240341268	rs3765588	A	G	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:59,171:0.74:230
chr1	240341423	rs55930966	G	T	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr1	240343621	rs7519493	A	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr1	240351628	rs4659948	T	C	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr1	240370629	rs10926166	C	G	27750.77	.	AC=2;AF=1.00;AN=2;DB;DP=1052;set=Intersection	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr1	240371106	rs11586155	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=48.40;MQRankSum=3.031;QD=15.20;ReadPosRankSum=-1.726;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr1	240601269	rs2356386	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr1	240635491	rs2210861	G	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr1	240655330	rs9287248	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr1	240656824	rs10926280	C	A	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr1	240939391	rs12757054	C	T	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.979;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:304,122:0.29:426
chr1	240975213	rs2275742	T	C	5198.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:65,218:0.77:283
chr1	240975435	rs2275744	C	T	2514.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:40,102:0.72:142
chr1	240977964	rs12744536	G	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr1	240979803	rs3738068	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	241519098	rs4659599	T	A	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	241667233	rs4660099	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:38,83:0.69:121
chr1	241667244	rs4659607	G	T	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:46,107:0.70:153
chr1	241675119	rs6673988	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr1	241676758	rs10926500	C	T	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr1	241728198	rs12139441	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr1	241755567	rs1053221	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr1	241767930	rs632966	G	A	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr1	241798631	rs3737604	C	T	3813.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:66,166:0.72:232
chr1	241838057	rs67170285	C	T	3127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=5.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.93;ReadPosRankSum=-0.631;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:31,81:0.72:112
chr1	241838065	rs66585415	T	C	3009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.39;ReadPosRankSum=-0.688;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:30,76:0.72:106
chr1	241847018	rs10802979	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr1	241850657	rs78752834	T	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr1	241907691	rs7418599	A	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-0.245;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:122,52:0.30:174
chr1	241907817	rs10802990	T	C	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.131;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:223,92:0.29:315
chr1	241913062	rs11432682	C	CT	1674.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	241933876	rs11809239	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr1	241946766	rs953597	A	C	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:42,137:0.77:179
chr1	241954005	.	TAA	T,TA	2656.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.505;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=8.847;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.153;SOR=1.282;set=HC	GT:AD:AF:DP	1/2:26,70,106:0.35,0.52:202
chr1	241964559	rs4658661	C	G,T	8826.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=386;set=Intersection	GT:AF:DP	1/2:0.27,0.73:385
chr1	242016590	rs4149867	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr1	242042545	rs1776148	A	G	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr1	242042690	rs1418760	A	G	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr1	242045275	rs1635498	C	T	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr1	242048514	.	G	GTAAATAAATAAA	802.73	.	AC=2;AF=1.00;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr1	242048945	rs1635488	C	T	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr1	242053042	rs851797	A	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	242383170	rs5782230	T	TAC	558.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr1	242383201	rs1973498	T	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.541;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:87,27:0.24:114
chr1	242383510	rs7547029	T	C	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr1	242511556	rs112478548	AACAAAG	A	4751.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:72,122:0.63:194
chr1	242687390	rs2810008	G	A	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=2.249;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:138,57:0.29:195
chr1	243327520	rs1815604	A	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=1.111;QD=1.77;ReadPosRankSum=0.496;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr1	243332884	rs140816120	AAG	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.36;MQRankSum=-0.457;QD=3.38;ReadPosRankSum=0.838;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr1	243335940	rs74889777	GA	G	965.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:18,58:0.76:76
chr1	243354791	rs144272877	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr1	243362331	rs2789172	C	T	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.55;QD=29.53;SOR=3.083;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr1	243388370	rs10926973	A	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr1	243419429	rs3904682	T	A	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:83,213:0.72:296
chr1	243433654	rs2275154	A	G	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr1	243471462	rs976529	C	T	5808.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:171,272:0.61:443
chr1	243493907	rs2275155	A	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-2.220;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:129,36:0.22:165
chr1	243507680	rs3215963	C	CA	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr1	243736210	rs66631932	CT	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.938;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr1	244528127	rs9782996	T	C	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr1	244538931	.	G	GT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.166;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr1	244579519	rs3123696	T	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	244681952	.	C	G	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.822;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-1.186;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:20,35:0.64:55
chr1	244773784	rs6698173	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr1	244773803	rs6698180	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr1	244803205	rs60280231	CTT	C,CT	4279.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.810;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.273;QD=22.41;ReadPosRankSum=0.859;SOR=0.730;set=HC	GT:AD:AF:DP	1/2:5,158,28:0.83,0.15:191
chr1	244993308	rs77714147	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.360;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr1	245006474	rs61749963	A	G	1399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-1.063;QD=4.14;ReadPosRankSum=-1.812;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:246,92:0.27:338
chr1	245021291	rs11299108	TA	T	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.112;QD=0.48;ReadPosRankSum=-0.590;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:194,42:0.18:236
chr1	245025697	.	T	TAA	516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=0.420;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:11,27:0.71:38
chr1	245027349	rs6675421	C	T	10186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=0.721;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:199,464:0.70:663
chr1	245133489	rs7545078	T	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr1	245133539	rs7542813	A	G	3581.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr1	245133549	rs10536649	GGC	G	2065.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr1	245133623	rs145835471	T	TCCTCC	5991.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:93,143:0.61:236
chr1	245133662	rs61844237	G	C	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:116,203:0.64:319
chr1	245179011	rs201488109	CA	C	1378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=5.246;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.810;QD=6.69;ReadPosRankSum=-1.073;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:72,134:0.65:206
chr1	245179171	rs1196365	C	T	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:87,163:0.65:250
chr1	245179188	rs1196366	G	T	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr1	245179212	rs6696296	C	A	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr1	245180639	rs34180210	AT	A	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.222;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.726;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr1	245180744	rs35571166	G	T	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=-0.524;QD=10.88;ReadPosRankSum=0.431;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr1	245180750	rs35685382	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=-0.566;QD=11.40;ReadPosRankSum=0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr1	245222634	rs694793	C	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr1	245222839	rs579269	G	T	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr1	245319505	rs67160917	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr1	245530588	rs372898228	G	C	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.245;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:162,68:0.30:230
chr1	245703819	rs7551348	T	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr1	245703990	rs9919234	G	T	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	245765800	rs7541927	T	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr1	245775356	.	T	TTGTG	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=-0.000;DP=130;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.000;QD=4.36;ReadPosRankSum=-1.803;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr1	245775403	.	TGTGTGA	T	644	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=2;MGOF=32;MMLQ=28;MQ=55.96;NF=2;NR=26;PP=644;QD=23.1071428571;SC=TGTGTGTGTGTGTGTGAGAGA;SbPval=0.64;Source=Platypus;TC=51;TCF=4;TCR=47;TR=28;WE=245775417;WS=245775393;set=Platypus	GT:AD:AF:DP	1/0:23,28:0.55:51
chr1	245851304	rs6701084	A	G	14947.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr1	245851609	rs150834033	C	G	15987.77	.	AC=1;AF=0.500;AN=2;DB;DP=1048;set=Intersection	GT:AD:AF:DP	0/1:320,726:0.69:1046
chr1	245861571	rs3205034	C	T	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr1	245913024	rs41267529	C	T	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-1.498;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:41,108:0.72:149
chr1	246021941	rs2362587	T	C	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=8.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=-0.811;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:155,70:0.31:225
chr1	246022071	rs2185370	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr1	246027024	rs12123124	A	G	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=0.144;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:120,63:0.34:183
chr1	246027029	rs61830203	A	T	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=0.150;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:133,66:0.33:199
chr1	246027034	rs2153404	G	C	7153.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr1	246091457	rs6669768	T	C	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr1	246091515	rs2275318	C	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	246091531	rs6669866	T	C	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr1	246093465	rs11295264	GA	G	4031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=2.364;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.117;QD=10.99;ReadPosRankSum=1.450;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:83,284:0.77:367
chr1	246110573	rs10802300	A	G	8691.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr1	246489706	rs57404221	GA	G	589.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.753;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:162,63:0.28:225
chr1	246489769	rs367922653	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.163;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:85,22:0.21:107
chr1	246490438	rs3737245	T	C	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-1.307;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:106,35:0.25:141
chr1	246490442	rs3737246	A	G	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.721;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:114,36:0.24:150
chr1	246490452	rs3737247	G	A	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-1.099;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:136,47:0.26:183
chr1	246498866	rs10159376	A	C	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,16:0.25:63
chr1	246670281	rs6671418	G	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	246670333	rs6426303	A	G	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr1	246670481	rs7520453	C	G	11214.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr1	246711789	rs3124131	T	A	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr1	246711816	rs5782396	GA	G	1785.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr1	246712033	rs1890160	A	G	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	246714587	rs10754526	G	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=1.893;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:39,43:0.52:82
chr1	246714631	rs80342781	TG	AA	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.66;ReadPosRankSum=-0.976;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr1	246714636	rs34850511	T	A	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.44;ReadPosRankSum=-0.926;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:25,34:0.58:59
chr1	246714728	rs9426201	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr1	246714740	rs10754527	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr1	246720174	rs3120710	A	G	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr1	246720798	rs3124071	G	A	4850.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.201;MLEAC=2;MLEAF=1.000;MQ=59.82;MQRankSum=-0.152;QD=26.08;ReadPosRankSum=1.855;SOR=0.380;set=HC	GT:AD:AF:DP	1/1:1,185:0.99:186
chr1	246727558	rs3120713	G	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr1	246755124	rs6702823	T	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.174;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:135,38:0.22:173
chr1	246903654	rs3007322	G	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr1	246929483	rs12144408	A	G	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:79,37:0.32:116
chr1	246939610	rs3838991	A	ATATT	3013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=2.569;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:177,85:0.32:262
chr1	246939856	rs3795465	G	A	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:142,70:0.33:212
chr1	246939943	rs6685364	T	C	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.582;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr1	246940179	rs3795464	G	A	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.012;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=5.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.202;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:125,42:0.25:167
chr1	246940182	rs3795463	C	A	1311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=4.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=0.319;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:126,41:0.25:167
chr1	246940442	rs3795462	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr1	246943547	rs41267531	A	C	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:32,92:0.74:124
chr1	247019277	rs74152748	T	C	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:29,65:0.69:94
chr1	247021266	rs111386980	C	CTTCT	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.88;QD=38.10;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr1	247024691	rs41304040	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr1	247031203	rs368941568	C	A	179.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=7.782;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.84;ReadPosRankSum=1.161;SOR=3.418;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr1	247031237	.	C	G	422	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=2;MGOF=82;MMLQ=27;MQ=59.02;NF=0;NR=19;PP=422;QD=24.0405901341;SC=CGTGGTAATACTAGCTAAAAA;SbPval=1.0;Source=Platypus;TC=32;TCF=3;TCR=29;TR=19;WE=247031245;WS=247031227;set=Platypus	GT:AD:AF:DP	0/1:13,19:0.59:32
chr1	247048834	.	T	C	21	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=23;MQ=52.17;NF=1;NR=2;PP=21;QD=18.5904041824;SC=GATAACATCGTTACCACTGGA;SbPval=0.27;Source=Platypus;TC=12;TCF=8;TCR=4;TR=3;WE=247048842;WS=247048824;set=Platypus	GT:AD:AF:DP	1/0:9,3:0.25:12
chr1	247054530	rs1472275	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr1	247067139	rs34620854	CA	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=1.077;QD=5.12;ReadPosRankSum=-1.279;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr1	247067492	rs34554106	AG	A	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr1	247091604	rs35687457	CA	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.098;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr1	247150740	rs3749427	T	C	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	247151557	rs2642992	A	G	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr1	247162658	rs2642973	C	T	15727.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:2,598:1.00:600
chr1	247241850	rs41305955	G	C	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=0.911;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:325,125:0.28:450
chr1	247242032	rs3806269	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:110,45:0.29:155
chr1	247267274	rs4925692	C	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=5.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.307;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:82,29:0.26:111
chr1	247287256	rs12058911	T	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-1.443;QD=1.69;ReadPosRankSum=-2.649;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:289,63:0.18:352
chr1	247287260	rs3901383	A	G	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-3.569;QD=2.64;ReadPosRankSum=0.156;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:271,73:0.21:344
chr1	247287269	rs78802037	T	C	3640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.332;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.417;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-3.679;QD=11.13;ReadPosRankSum=-2.400;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:203,124:0.38:327
chr1	247322298	rs6675536	G	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:105,50:0.32:155
chr1	247323260	rs9793102	C	A	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.269;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-0.507;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr1	247337159	rs10924931	A	G	1303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=2.438;QD=3.73;ReadPosRankSum=-1.167;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:261,89:0.25:350
chr1	247365430	rs10754539	A	G	9962.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr1	247419509	rs1778540	T	C	12052.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr1	247419664	rs1778541	C	T	17183.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr1	247420421	rs41308154	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr1	247473889	rs61838684	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.636;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr1	247485932	rs10924984	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr1	247486213	rs41268345	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:51,15:0.23:66
chr1	247486421	rs6692645	G	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	247486736	rs6426239	C	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr1	247582463	.	TATA	T	416.37	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=0.000;QD=12.62;ReadPosRankSum=0.814;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr1	247582465	rs199523445	TA	T	62.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.670;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.924;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr1	247587531	rs4925543	A	G	15234.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr1	247588858	rs35829419	C	A	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	247597329	rs12124866	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr1	247597349	.	G	GGAGCTCTCTGGTCAGATGTGTTCTGAGGCCTTCTCTATTCCA	1008	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=1;HapScore=1;MGOF=18;MMLQ=28;MQ=60.01;NF=4;NR=1;PP=1008;QD=206.8;SC=CCTCTGTTCTGGAGCTCTCTG;SbPval=0.92;Source=Platypus;TC=17;TCF=10;TCR=7;TR=5;WE=247597357;WS=247597339;set=Platypus	GT:AD:AF:DP	1/1:12,5:0.29:17
chr1	247597364	.	G	GAT	2639.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=109.99;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr1	247597365	.	G	A	1239	.	AC=2;AF=1.00;AN=2;BRF=0.1;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=25;MQ=59.77;NF=53;NR=13;PP=1239;QD=19.2995638265;SC=CTCTGGTCAGGTGTGTTCTGA;SbPval=0.53;Source=Platypus;TC=66;TCF=53;TCR=13;TR=66;WE=247597373;WS=247597355;set=Platypus	GT:AD:AF:DP	1/1:0,66:1.00:66
chr1	247597365	.	G	GTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA	2634.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=105.39;SOR=5.058;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr1	247597629	rs72771997	C	T	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr1	247611570	.	CTTT	C,CT	1286.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.59;MQRankSum=0.633;QD=21.09;ReadPosRankSum=-0.473;SOR=0.981;set=HC	GT:AD:AF:DP	1/2:7,33,21:0.54,0.34:61
chr1	247614693	rs6695302	C	T	15102.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr1	247614896	rs11583410	A	C	5895.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:143,252:0.64:395
chr1	247615261	rs35305980	GA	G	2601.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:293,105:0.26:398
chr1	247694958	rs6702695	G	A	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:97,149:0.61:246
chr1	247695612	rs6657127	G	A	7806.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr1	247695756	rs6697472	T	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr1	247712303	rs41315846	T	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.29;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr1	247729206	rs367904043	CT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.709;QD=1.73;ReadPosRankSum=0.270;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr1	247752019	rs1151687	G	C	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr1	247752161	rs10925085	T	C	9489.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr1	247752367	rs869111	A	G	8127.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr1	247769752	rs61730407	A	G	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr1	247835352	rs1151641	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	247835950	rs1151640	T	C	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr1	247921100	rs1552812	T	G	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr1	247921352	rs1552813	C	T	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr1	247921717	rs10888359	C	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=26.70;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr1	247921789	rs147960387	A	AGT	449.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,18:0.86:21
chr1	247978087	rs10888248	G	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr1	247978319	rs6695283	A	G	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr1	247978541	rs35979231	AAGG	A	14794.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr1	247978996	rs10888249	A	G	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr1	248004296	rs6681483	A	G	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:42,104:0.71:146
chr1	248004614	rs6667389	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:273,115:0.30:388
chr1	248004687	rs10888255	C	G	2864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.884;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.964;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:435,174:0.29:609
chr1	248004775	rs10888256	C	T	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:354,169:0.32:523
chr1	248004848	rs4607924	G	C	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:169,84:0.33:253
chr1	248004877	rs10888257	C	T	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.65;ReadPosRankSum=0.563;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:151,80:0.35:231
chr1	248004884	rs1339845	T	C	7460.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.22;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr1	248005213	rs7522811	G	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=0.708;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:53,30:0.36:83
chr1	248020448	rs10749636	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr1	248020556	rs11204523	G	C	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr1	248023966	rs3737277	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-0.449;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:75,28:0.27:103
chr1	248028219	rs946696	G	A	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr1	248039451	rs3811444	C	T	6217.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:123,266:0.68:389
chr1	248039713	rs3811445	A	G	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr1	248058755	rs1337876	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	248058797	rs1856248	T	G	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr1	248058845	rs4500353	A	C	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,193:0.99:194
chr1	248058879	rs6587387	A	T	9642.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr1	248059423	rs10888267	C	T	6261.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:150,289:0.66:439
chr1	248059456	rs12135078	G	A	5981.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:121,268:0.69:389
chr1	248059476	rs12139390	A	C	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:101,233:0.70:334
chr1	248059703	rs11204545	T	A	8641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.51;ReadPosRankSum=0.112;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:106,220:0.67:326
chr1	248059712	rs11204546	T	C	8419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.52;ReadPosRankSum=-0.820;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:95,211:0.69:306
chr1	248059856	rs10888268	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr1	248084434	rs11204563	G	A	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr1	248084464	rs11204564	T	C	3498.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.770;MLEAC=2;MLEAF=1.000;MQ=52.01;MQRankSum=0.073;QD=27.99;ReadPosRankSum=-0.112;SOR=1.769;set=HC	GT:AD:AF:DP	1/1:2,123:0.98:125
chr1	248084464	.	TGGGACCACC	CGGGACCACC,CGGGACCGCA	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=18;MMLQ=23;MQ=44.11;NF=47,2;NR=87,12;PP=2962,481;QD=20;SC=CCTGATTCACTGGGACCACCG;SbPval=0.58;Source=Platypus;TC=137;TCF=49;TCR=88;TR=134,14;WE=248084481;WS=248084454;set=Platypus	GT:AF:DP	0/1:0.98:137
chr1	248084471	rs149623571	A	G	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.156;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=50.25;MQRankSum=-1.471;QD=4.50;ReadPosRankSum=-1.873;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr1	248084473	rs143274587	C	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=6.405;MLEAC=1;MLEAF=0.500;MQ=49.65;MQRankSum=-3.060;QD=4.67;ReadPosRankSum=0.199;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr1	248085108	rs4625315	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr1	248085341	rs4925773	T	A	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr1	248112627	rs4925787	T	C	10155.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:234,472:0.67:706
chr1	248112745	rs4925788	G	T	15475.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr1	248112762	rs4925789	TG	CA	25468.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.99;QD=45.89;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,555:1.00:555
chr1	248112771	rs4925791	C	T	15897.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.40;MQRankSum=-0.351;QD=27.13;ReadPosRankSum=0.902;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:2,584:1.00:586
chr1	248112809	rs4925583	A	G	20280.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,738:1.00:738
chr1	248112836	rs4925792	A	G	20009.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:1,756:1.00:757
chr1	248112915	rs10888280	A	G	2272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-2.142;QD=3.84;ReadPosRankSum=-1.525;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:441,151:0.26:592
chr1	248128929	rs6664332	G	A	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:359,170:0.32:529
chr1	248129240	rs4478844	G	A	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:84,189:0.69:273
chr1	248224569	rs75239130	G	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.622;ClippingRankSum=0.000;DB;DP=1115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-18.995;QD=0.87;ReadPosRankSum=1.904;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:940,174:0.16:1114
chr1	248224595	rs76336532	C	T	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.968;ClippingRankSum=0.000;DB;DP=1122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-26.459;QD=0.39;ReadPosRankSum=-9.013;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:964,156:0.14:1120
chr1	248343543	rs9435919	C	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:182,81:0.31:263
chr1	248344442	rs4916105	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr1	248366702	rs4916112	G	A	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=822;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.067;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:581,239:0.29:820
chr1	248367415	rs4916082	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:43,13:0.23:56
chr1	248402758	rs6666148	C	T	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:228,105:0.32:333
chr1	248457979	rs6667171	C	A	3040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.290;QD=4.17;ReadPosRankSum=-0.990;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:529,200:0.27:729
chr1	248458689	rs6674940	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.562;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.977;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-4.328;QD=1.40;ReadPosRankSum=-2.023;SOR=1.373;set=HC	GT:AD:AF:DP	0/1:118,20:0.14:138
chr1	248458717	rs12745228	C	G	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-5.176;QD=1.08;ReadPosRankSum=0.398;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:172,33:0.16:205
chr1	248486895	rs4244184	G	T	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.670;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:181,65:0.26:246
chr1	248486913	rs4244185	A	G	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-2.091;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:197,80:0.29:277
chr1	248487638	rs7555310	A	G	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:225,94:0.29:319
chr1	248487768	rs7555424	A	G	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:282,128:0.31:410
chr1	248512052	rs41269349	C	G	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:77,231:0.75:308
chr1	248512064	rs28372410	T	G	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.110;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:278,94:0.25:372
chr1	248512094	rs28728105	C	T	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.215;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:328,122:0.27:450
chr1	248512637	rs2039824	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:128,70:0.35:198
chr1	248512749	rs28377739	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:116,64:0.36:180
chr1	248512767	rs28545014	G	T	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:125,57:0.31:182
chr1	248513023	rs28607995	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr1	248513088	rs28481429	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr1	248525638	rs34079073	CA	C	6125.73	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:487,206:0.30:693
chr1	248550976	rs6587467	T	G	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=1.016;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:336,147:0.30:483
chr1	248551009	rs41308164	G	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:370,168:0.31:538
chr1	248569282	rs28667896	A	G	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.317;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr1	248569369	rs28599722	A	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:153,65:0.30:218
chr1	248570440	rs6695780	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.549;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr1	248604452	rs78822516	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr1	248604454	rs113331655	CAT	C	1040.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr1	248604465	rs76925977	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr1	248604542	rs61834485	C	T	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:5,85:0.94:90
chr1	248604559	rs150497047	T	TTC	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=15.973;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-5.742;QD=1.11;ReadPosRankSum=0.841;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:94,8:0.08:102
chr1	248604614	rs201226597	A	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.423;MLEAC=1;MLEAF=0.500;MQ=49.99;MQRankSum=-3.479;QD=0.63;ReadPosRankSum=1.522;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:195,33:0.14:228
chr1	248604765	rs144165631	T	A	2734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=16.480;MLEAC=1;MLEAF=0.500;MQ=49.08;MQRankSum=-3.225;QD=10.90;ReadPosRankSum=1.626;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:122,129:0.51:251
chr1	248605436	rs71642447	C	G	3673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-9.199;QD=10.68;ReadPosRankSum=-2.333;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:195,149:0.43:344
chr1	248605442	rs71642448	G	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.611;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=7.730;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-15.554;QD=0.76;ReadPosRankSum=0.421;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:276,41:0.13:317
chr1	248617173	rs78428672	A	G	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=12.409;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-8.980;QD=6.48;ReadPosRankSum=-2.287;SOR=2.358;set=HC	GT:AD:AF:DP	0/1:84,28:0.25:112
chr1	248617181	.	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.201;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=14.741;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-7.838;QD=6.09;ReadPosRankSum=-2.002;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr1	248636579	rs1782198	C	T	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-10.219;QD=1.78;ReadPosRankSum=0.856;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:129,25:0.16:154
chr1	248637046	rs148025314	G	A	311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=14.599;MLEAC=1;MLEAF=0.500;MQ=46.98;MQRankSum=-5.487;QD=1.03;ReadPosRankSum=-1.214;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:258,45:0.15:303
chr1	248637543	rs139993642	C	T	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;ClippingRankSum=0.000;DB;DP=816;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.34;MQRankSum=-8.267;QD=1.10;ReadPosRankSum=1.506;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:691,124:0.15:815
chr1	248637685	rs201431222	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=47.11;MQRankSum=-2.173;QD=2.42;ReadPosRankSum=-1.221;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr1	248685253	rs9727474	T	C	6959.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr1	248722659	rs201896684	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.15;MQRankSum=-0.319;QD=1.31;ReadPosRankSum=-0.943;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr1	248722671	rs140437806	T	A	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.452;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.26;MQRankSum=-0.080;QD=1.53;ReadPosRankSum=-0.799;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr1	248722722	rs199528787	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.45;QD=31.05;SOR=3.198;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr1	248722777	rs77589892	T	A	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.16;MQRankSum=-0.843;QD=2.38;ReadPosRankSum=-1.569;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:121,32:0.21:153
chr1	248722883	rs78125102	A	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=7.846;MLEAC=1;MLEAF=0.500;MQ=53.68;MQRankSum=-0.873;QD=7.02;ReadPosRankSum=0.540;SOR=0.088;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr1	248722888	rs78981094	C	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=51.93;MQRankSum=-0.877;QD=10.41;ReadPosRankSum=-0.288;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr1	248737259	rs189248971	C	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.06;QD=26.26;SOR=6.439;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr1	248737343	rs61833441	C	T	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.319;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=11.380;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=1.627;QD=3.11;ReadPosRankSum=-3.987;SOR=1.930;set=HC	GT:AD:AF:DP	0/1:352,51:0.13:403
chr1	248737348	rs61833442	G	A	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.291;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.500;MQ=55.48;MQRankSum=1.489;QD=3.07;ReadPosRankSum=-4.738;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:369,65:0.15:434
chr1	248737595	rs150601708	A	G	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.294;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=9.433;MLEAC=1;MLEAF=0.500;MQ=41.27;MQRankSum=-0.355;QD=6.03;ReadPosRankSum=-0.252;SOR=2.373;set=HC	GT:AD:AF:DP	0/1:104,41:0.28:145
chr1	248737645	rs143071665	T	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=43.562;MLEAC=1;MLEAF=0.500;MQ=44.00;MQRankSum=-4.510;QD=0.35;ReadPosRankSum=0.821;SOR=5.523;set=HC	GT:AD:AF:DP	0/1:144,21:0.13:165
chr1	248789454	rs1892441	G	C	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr1	248789504	rs1892442	T	C	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr1	248790075	rs1892443	A	G	9768.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr1	248801480	.	A	G	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.796;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=27.137;MLEAC=1;MLEAF=0.500;MQ=50.42;MQRankSum=-3.927;QD=8.12;ReadPosRankSum=-3.004;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:37,13:0.26:50
chr1	248801488	.	C	T	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.688;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=20.645;MLEAC=1;MLEAF=0.500;MQ=50.09;MQRankSum=-3.873;QD=11.75;ReadPosRankSum=-3.700;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr1	248801505	.	T	TCA	1323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=13.315;MLEAC=1;MLEAF=0.500;MQ=51.37;MQRankSum=-2.686;QD=18.64;ReadPosRankSum=-3.263;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr1	248801511	.	A	G	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=18.430;MLEAC=1;MLEAF=0.500;MQ=51.75;MQRankSum=-2.579;QD=21.67;ReadPosRankSum=-2.396;SOR=2.531;set=HC	GT:AD:AF:DP	0/1:36,41:0.53:77
chr1	248801514	.	AC	A	1953.73	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr1	248801528	.	G	A	2640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=13.029;MLEAC=1;MLEAF=0.500;MQ=52.61;MQRankSum=-2.423;QD=26.67;ReadPosRankSum=-0.177;SOR=1.875;set=HC	GT:AD:AF:DP	0/1:34,65:0.66:99
chr1	248801538	.	G	A	2991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=7.545;MLEAC=1;MLEAF=0.500;MQ=52.54;MQRankSum=-1.489;QD=29.33;ReadPosRankSum=1.659;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:29,73:0.72:102
chr1	248801542	rs372631772	A	G	3120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=8.000;MLEAC=1;MLEAF=0.500;MQ=52.33;MQRankSum=-0.544;QD=31.21;ReadPosRankSum=1.892;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:25,75:0.75:100
chr1	248801550	rs374446105	C	T	3303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=8.465;MLEAC=1;MLEAF=0.500;MQ=52.49;MQRankSum=0.091;QD=31.77;ReadPosRankSum=2.880;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:23,81:0.78:104
chr1	248801556	rs79649486	C	T	3615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=10.169;MLEAC=1;MLEAF=0.500;MQ=52.66;MQRankSum=1.436;QD=35.10;ReadPosRankSum=1.940;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:16,87:0.84:103
chr1	248801566	rs74154510	T	G	4134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=12.441;MLEAC=1;MLEAF=0.500;MQ=52.57;MQRankSum=3.293;QD=38.28;ReadPosRankSum=1.980;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:12,96:0.89:108
chr1	248801592	rs78622116	C	T	4395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.363;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=25.232;MLEAC=1;MLEAF=0.500;MQ=51.68;MQRankSum=3.518;QD=38.90;ReadPosRankSum=2.556;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:7,106:0.94:113
chr1	248801602	.	T	TCA	4193.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.234;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=23.526;MLEAC=2;MLEAF=1.000;MQ=51.90;MQRankSum=3.733;QD=39.19;ReadPosRankSum=3.410;SOR=0.482;set=HC	GT:AD:AF:DP	1/1:7,100:0.93:107
chr1	248801610	rs150878651	GC	AT	4202.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.194;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=18.961;JOINED;MLEAC=2;MLEAF=1.000;MQ=51.72;MQRankSum=3.703;QD=39.27;ReadPosRankSum=3.163;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:7,100:0.93:107
chr1	248801633	rs74901534	A	G	3932.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=12.125;MLEAC=2;MLEAF=1.000;MQ=51.66;MQRankSum=2.984;QD=39.72;ReadPosRankSum=0.420;SOR=0.032;set=HC	GT:AD:AF:DP	1/1:5,94:0.95:99
chr1	248801778	rs201643849	A	T	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.11;QD=29.35;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr1	248801944	rs143010547	TCAGCACG	T	12061.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.16;QD=44.34;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr1	248813135	rs4916153	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr1	248813547	rs201161767	G	C	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.75;QD=25.64;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr1	248814052	rs28533004	T	A	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=46.74;MQRankSum=-6.215;QD=7.72;ReadPosRankSum=-0.398;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:178,125:0.41:303
chr1	248814080	rs1782242	A	C	9679.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr1	248814126	rs28418327	G	A	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:245,157:0.39:402
chr1	248814265	rs3033476	GAAC	G	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.47;QD=37.57;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr1	248844959	rs55871516	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:180,75:0.29:255
chr1	248845097	rs2000390	C	T	7622.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:126,338:0.73:464
chr1	248845356	rs41311583	G	T	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:196,112:0.36:308
chr1	248845411	rs11485825	G	A	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:90,175:0.66:265
chr1	248845458	rs4509608	C	T	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:73,168:0.70:241
chr1	248845471	rs4575113	T	C	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr1	248845499	rs4462184	A	G	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr1	249110906	rs4926508	G	C	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:40,139:0.78:179
chr2	45895	rs4241318	A	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	224919	rs2290911	A	G	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-0.388;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:17,54:0.76:71
chr2	224970	rs2290912	C	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	230912	rs2306060	A	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr2	234130	rs3748872	T	G	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:140,77:0.35:217
chr2	242732	rs113405432	T	TAAC	1727.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.337;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.00;ReadPosRankSum=-0.907;SOR=2.157;set=HC	GT:AD:AF:DP	1/1:2,62:0.97:64
chr2	242800	rs10181051	T	C	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=25.51;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	243504	rs7556816	C	T	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.056;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.021;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:174,57:0.25:231
chr2	243567	rs11383620	T	TA	5929.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:25,297:0.92:322
chr2	262553	rs7596678	T	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	264019	rs7595075	C	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr2	264895	rs4854300	G	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	269352	rs6755722	G	A	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-1.671;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:122,47:0.28:169
chr2	271797	rs59937473	G	A	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr2	271998	rs112400131	CA	C,CAA	1454.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.644;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=1.403;QD=8.31;ReadPosRankSum=-0.404;SOR=0.519;set=HC	GT:AD:AF:DP	1/2:31,86,58:0.49,0.33:175
chr2	272203	rs11553746	C	T	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:82,143:0.64:225
chr2	272840	rs12714401	G	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	272926	rs12714402	A	G	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	273070	rs12714403	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	277003	rs79716074	A	G	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	283231	rs368562757	A	AT	1633.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	287448	.	TAAAA	T,TAA	1429.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.18;ReadPosRankSum=1.884;SOR=1.542;set=HC	GT:AD:AF:DP	1/2:4,25,20:0.51,0.41:49
chr2	675831	rs2293084	G	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	676177	rs2293083	C	G	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	676457	rs2293082	G	C	16766.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr2	676478	rs3215297	T	TGTAA	22729.73	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr2	677213	rs3749138	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr2	905385	.	GGTCTGGTCTTTCATTTCCTCCCGGCCTCCTCGCCTGCACTGC	G	1993.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=10.255;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=3.459;QD=28.89;ReadPosRankSum=0.234;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:18,51:0.74:69
chr2	905427	.	C	G	902	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=4;MGOF=25;MMLQ=28;MQ=49.85;NF=10;NR=16;PP=902;QD=36.029662021;SC=GCCTGCACTGCGTCTGGTGTT;SbPval=0.58;Source=Platypus;TC=41;TCF=16;TCR=25;TR=26;WE=905450;WS=905417;set=Platypus	GT:AD:AF:DP	0/1:15,26:0.63:41
chr2	905441	.	GA	TT	713	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=4;MGOF=25;MMLQ=28;MQ=40.31;NF=3;NR=5;PP=713;QD=95.8084843578;SC=TGGTGTTTCAGATCCTCCCGG;SbPval=0.61;Source=Platypus;TC=27;TCF=10;TCR=17;TR=8;WE=905450;WS=905417;set=Platypus	GT:AD:AF:DP	0/1:19,8:0.30:27
chr2	905442	rs62103942	A	T	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=5.823;QD=35.50;ReadPosRankSum=-0.674;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:9,46:0.84:55
chr2	1079130	rs4971429	G	A	4370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.33;ReadPosRankSum=1.007;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:59,107:0.64:166
chr2	1079130	.	GCG	ACA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=25;MQ=60.0;NF=66;NR=32;PP=2944;QD=20;SC=TGAGCAGGAGGCGTGCGTCAC;SbPval=0.52;Source=Platypus;TC=153;TCF=103;TCR=50;TR=98;WE=1079151;WS=1079120;set=Platypus	GT:AD:AF:DP	1/0:55,98:0.64:153
chr2	1079132	rs4971430	G	A	4370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.56;ReadPosRankSum=0.643;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:60,111:0.65:171
chr2	1079143	rs4971431	A	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	1079320	rs4971432	C	T	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	1093965	rs11127460	G	A	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:78,129:0.62:207
chr2	1133188	rs5828807	G	GCACA	1272.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr2	1133367	rs79642551	G	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-1.477;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:100,49:0.33:149
chr2	1168756	rs4597564	G	A	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	1168982	rs7560649	T	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	1241592	rs146197111	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	1418192	rs9678281	C	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr2	1426786	rs142461054	C	T	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:73,130:0.64:203
chr2	1437410	rs4927578	C	T	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	1442551	rs34191654	AT	A	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.119;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:178,56:0.24:234
chr2	1457364	rs2070881	A	G	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr2	1459806	rs4927610	A	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	1481155	rs2280132	G	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr2	1481231	rs2175977	G	C	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr2	1488668	rs6715129	T	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr2	1491497	rs6727192	T	C	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.014;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:29,55:0.65:84
chr2	1491510	.	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.068;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr2	1497442	rs9679267	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr2	1497803	rs1126797	C	T	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:81,163:0.67:244
chr2	1499728	rs2276704	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr2	1499899	rs732608	C	T	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:156,232:0.60:388
chr2	1499927	rs732609	A	C	4581.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:143,215:0.60:358
chr2	1520676	rs1126799	T	C	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:52,76:0.59:128
chr2	1544617	rs12615819	G	A	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:109,200:0.65:309
chr2	1546327	rs1042589	C	G	2796.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:416,178:0.30:594
chr2	1642537	rs6729142	T	C	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	1642539	rs6742040	C	T	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	1642545	rs6742039	C	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.44;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	290.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=8.81;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	1647171	rs6730800	T	C	8850.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	1651842	rs11685976	C	A	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	1652660	rs3811613	G	A	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	1652822	rs1863135	T	G	6725.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr2	1664654	rs17841813	A	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	1667310	rs12475392	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	1683923	rs72763569	G	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr2	1696510	rs138859568	AAC	A	2366.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:166,79:0.32:245
chr2	1747993	rs62116430	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr2	1842892	rs111984953	G	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr2	1842968	rs6728368	T	C	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:146,66:0.31:212
chr2	1843285	rs10196494	A	G	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.039;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr2	1844458	rs4381806	T	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	1844652	rs7425544	C	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-1.010;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr2	1844675	.	TC	T	341.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=0.463;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:47,14:0.23:61
chr2	1844676	.	CT	C	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.082;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr2	1895713	.	A	G	55.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	1926437	rs1529667	G	T	14219.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr2	1982877	rs2304007	T	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:203,112:0.36:315
chr2	1983374	rs2304008	A	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:139,68:0.33:207
chr2	1983395	rs2304009	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:143,69:0.33:212
chr2	1983619	rs7561518	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:98,57:0.37:155
chr2	3200948	rs1037467	C	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	3212247	rs7584823	G	T	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	3217777	rs11127386	A	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	3217794	rs10865535	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	3217908	rs11682452	G	C	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,238:1.00:239
chr2	3277947	rs2694081	T	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr2	3322797	rs12618407	C	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:133,61:0.31:194
chr2	3342009	rs3811617	T	C	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	3356849	rs4854122	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	3356953	rs2875394	A	T	5561.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	3358295	rs12612251	T	C	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-0.611;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:68,36:0.35:104
chr2	3358458	rs146001084	ATTATGAAGTTAGAT	A	4964.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	3391826	rs11127423	C	T	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=0.044;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:100,59:0.37:159
chr2	3392075	rs10865541	T	C	6722.77	.	AC=1;AF=0.500;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	0/1:695,374:0.35:1069
chr2	3392295	rs11686212	A	G	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:348,169:0.33:517
chr2	3392513	rs12999423	TT	CA	5349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=2.623;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=2.240;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:309,151:0.33:460
chr2	3393565	rs71396985	C	CAA	1749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.682;QD=9.83;ReadPosRankSum=1.131;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:125,53:0.30:178
chr2	3425514	rs7558487	G	C	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:128,86:0.40:214
chr2	3460870	rs7579428	T	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	3469278	rs4971513	C	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.312;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr2	3469463	rs4971514	G	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr2	3470115	rs7593516	T	C	4957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=-0.564;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:262,141:0.35:403
chr2	3470124	rs7574517	G	A	4975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.056;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:274,145:0.35:419
chr2	3470186	rs11691759	G	C	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:211,116:0.35:327
chr2	3470254	rs11677515	T	G	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.014;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=5.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.027;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:125,49:0.28:174
chr2	3481637	rs4535074	T	C	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.242;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:84,30:0.26:114
chr2	3481659	rs4321399	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr2	3481716	rs4535075	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	3482796	rs11890651	T	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:158,45:0.22:203
chr2	3482912	rs13431788	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,25:0.32:79
chr2	3483205	rs6767	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:200,105:0.34:305
chr2	3483390	rs7569694	T	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	3488502	rs9752130	A	G	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:377,190:0.34:567
chr2	3502709	rs10208494	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	3502909	rs10627319	A	ACTT	14625.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr2	3502910	rs58219575	G	T	14634.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	3502932	rs10194787	G	A	6047.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	3504290	rs6146601	GTGTACCTGCCGCCGCA	G	2086.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr2	3504687	rs9950	A	G	12240.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:2,477:1.00:479
chr2	3504819	rs34240449	A	G	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	3504893	rs35008570	G	GA	1244.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	3517840	rs116205064	C	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr2	3595834	rs13002108	C	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	3627648	rs7576238	G	C	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	3652616	rs3769507	G	C	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	3653576	rs7604806	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	3653844	rs3739147	T	C	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	3660752	rs3811531	T	C	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	3685046	rs3811528	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	3685074	rs3811527	A	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	3774436	rs357940	C	T	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	3774448	rs12711970	T	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,41:0.55:74
chr2	3774519	rs357941	T	C	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	3800095	rs56857953	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr2	3800383	rs357969	C	T	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	3800496	rs357968	C	T	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	3815250	rs10180257	A	G	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	3815477	rs17017989	T	A	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.140;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:134,80:0.37:214
chr2	3815532	rs11404437	A	AT	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=7.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.217;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:27,34:0.56:61
chr2	3826324	rs13005405	C	T	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	3826387	rs13021385	T	C	7381.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	3826597	rs13035992	G	A	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	4135981	rs1024026	C	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr2	4672834	rs71906919	CTG	C	53.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr2	7001224	.	TACACACACACGC	T	672	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=23;MQ=59.18;NF=30;NR=18;PP=672;QD=14.4375;SC=CATGTACGTATACACACACAC;SbPval=0.81;Source=Platypus;TC=75;TCF=41;TCR=34;TR=48;WE=7001247;WS=7001214;set=Platypus	GT:AD:AF:DP	0/1:27,48:0.64:75
chr2	7001233	rs3085147	ACG	A	5138.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.46;SOR=1.397;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	7001249	rs202012587	ACACACACACC	A	2273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.68;ReadPosRankSum=-1.332;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:13,83:0.86:96
chr2	7001259	.	C	A	2330	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=1;MGOF=97;MMLQ=23;MQ=59.53;NF=85;NR=53;PP=2330;QD=17.1360232793;SC=ACACACACACCCACACACTTA;SbPval=0.48;Source=Platypus;TC=142;TCF=89;TCR=53;TR=138;WE=7001274;WS=7001245;set=Platypus	GT:AD:AF:DP	1/0:4,138:0.97:142
chr2	7003879	rs2712039	G	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	7005069	rs2595172	C	T	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	7005369	rs11678810	A	G	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	7005992	rs4669108	C	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	7017903	rs10182815	A	G	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	7019079	rs6704746	A	G	7624.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	7026958	rs10197837	T	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	7030541	rs2305258	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.770;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	7046272	.	TACACACACACACACACACAC	T,TAC	6502.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.95;QD=40.39;SOR=3.171;set=HC	GT:AD:AF:DP	1/2:1,21,139:0.13,0.86:161
chr2	7046309	rs13395107	A	T	6211.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=3.364;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.506;QD=25.99;ReadPosRankSum=1.103;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:21,218:0.91:239
chr2	7050483	.	ATGTG	A,ATG	1549.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;QD=28.70;SOR=2.256;set=HC	GT:AD:AF:DP	1/2:0,17,37:0.31,0.69:54
chr2	7130552	.	CACACACACACACACAG	C	855.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.77;ReadPosRankSum=-1.392;SOR=1.555;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr2	7137067	rs364891	A	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.158;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr2	7137317	rs378548	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr2	7154632	rs309325	T	C	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr2	7164578	rs376219	A	G	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:203,106:0.34:309
chr2	7164746	rs392709	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr2	7164812	rs392409	C	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	7170388	rs72180357	CTGTGTG	C	1121.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.446;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.962;QD=11.22;ReadPosRankSum=-0.211;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:59,41:0.41:100
chr2	7243449	rs10617957	AGTGTGT	A,AGT	8289.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=235;set=Intersection	GT:AF:DP	1/2:0.71,0.29:217
chr2	7403641	rs111726098	T	TAC	1440.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,54:0.51:106
chr2	7409989	rs10548278	TTG	T	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.483;QD=1.27;ReadPosRankSum=-0.785;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:189,33:0.15:222
chr2	7421557	rs4668533	C	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr2	7421569	rs142314951	C	CTG	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr2	7421778	rs4668534	A	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:112,82:0.42:194
chr2	7421860	rs57998976	A	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	7471479	rs72249212	T	TTC	182.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:78,21:0.21:99
chr2	7471480	.	TCA	T	228.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=2.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.560;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr2	7471732	rs6732990	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr2	7540516	rs77549637	G	A	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	7540646	rs5829105	C	CA	3905.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	7540695	rs2163257	C	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	7540784	rs4669196	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	8178735	rs1364054	A	G	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.383;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:164,60:0.27:224
chr2	8178798	rs62104935	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=11.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=1.605;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:131,41:0.24:172
chr2	8822912	rs3845751	A	C	4960.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=5.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=0.768;SOR=0.109;set=HC	GT:AD:AF:DP	1/1:5,191:0.97:196
chr2	8866844	rs13024421	C	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	8870814	rs6431959	A	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	8871342	rs1044280	C	A	4294.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:71,188:0.73:259
chr2	8887426	rs12622593	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=1.169;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	8887910	rs1978841	A	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	8898036	rs6750682	A	G	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr2	8910717	rs10929557	T	C	241.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	8910736	rs144280481	GT	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.318;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	8910987	rs12476359	A	T	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	8916847	rs4669338	A	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	8943291	rs2356658	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	8998624	rs10929559	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	8998775	rs71657308	C	CA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=5.381;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.393;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:128,32:0.20:160
chr2	9143540	.	C	A	55.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	9419411	rs10193043	G	A	7710.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.325;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	9419415	rs10170149	C	T	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	9463454	rs12475160	C	T	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	9484542	rs6724103	C	T	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	9484561	rs79044067	TAAAA	T	4447.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	9491017	rs4669385	C	T	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	9496291	rs2709591	T	C	2508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.122;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:309,149:0.33:458
chr2	9498863	rs80340978	T	C	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=-1.294;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:45,74:0.62:119
chr2	9515099	.	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=2.495;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr2	9528536	rs2715860	G	C	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:376,197:0.34:573
chr2	9547171	rs10929579	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,46:0.34:136
chr2	9554255	rs10208358	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr2	9554461	rs10185646	C	A	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=1.621;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:229,116:0.34:345
chr2	9558905	rs35904811	C	CT	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=8.281;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.001;QD=5.23;ReadPosRankSum=2.373;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:59,56:0.49:115
chr2	9569972	rs7589401	A	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:105,46:0.30:151
chr2	9571054	rs2002044	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	9576553	rs6432003	T	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=8.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.025;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	9580540	rs111411247	G	GT	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	9583822	rs34762720	A	AG	2786.73	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:201,116:0.37:317
chr2	9583922	rs11681316	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:69,39:0.36:108
chr2	9597276	.	A	ATGTG	33.93	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	9613289	rs2001658	T	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.10;ReadPosRankSum=-0.272;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	9614667	.	G	GGCCCC	926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.958;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chr2	9615556	rs6432007	T	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.000;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr2	9616035	rs7591166	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	9616301	rs3831465	TAGG	T	250.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	9624643	rs61737635	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:105,76:0.42:181
chr2	9630231	rs6705408	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	9630244	rs3833563	AT	A	296.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	9631340	rs10495562	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:58,23:0.28:81
chr2	9633137	rs4622692	T	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr2	9634856	rs1048610	A	G	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.278;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:163,76:0.32:239
chr2	9637403	rs41264175	A	G	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:137,72:0.34:209
chr2	9642478	rs34367192	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr2	9650350	rs35431407	C	CATAA	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr2	9661184	rs4328603	T	C	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr2	9663514	rs149287449	T	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:66,40:0.38:106
chr2	9667751	rs17525468	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	9683473	rs184217620	T	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	9695888	rs55790676	G	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr2	9983529	rs114421205	G	A	1080.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.144;QD=9.92;ReadPosRankSum=0.077;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:78,31:0.28:109
chr2	9983529	.	GC	AA	724	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=1;MGOF=23;MMLQ=22;MQ=60.33;NF=14;NR=6;PP=724;QD=38.8733937431;SC=CCCCGAGCGCGCGGTTTCCCT;SbPval=0.7;Source=Platypus;TC=70;TCF=46;TCR=24;TR=20;WE=9983538;WS=9983519;set=Platypus	GT:AD:AF:DP	1/0:50,20:0.29:70
chr2	9983530	rs114862830	C	A	1080.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.200;QD=9.74;ReadPosRankSum=-0.474;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:78,33:0.30:111
chr2	9983582	rs62621835	C	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:110,56:0.34:166
chr2	9983591	rs35818430	A	AG	6780.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	9983686	rs2303914	G	T	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr2	9983704	rs144776624	A	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:63,24:0.28:87
chr2	9983716	rs385513	A	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=31.76;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	9983817	rs116365332	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.835;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	9985247	rs76407483	A	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr2	9989442	rs16867195	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	9991556	rs287991	G	A	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	9994288	rs4669471	C	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	10008872	rs12623017	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	10044941	rs450192	G	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	10045014	rs400917	C	T	14202.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr2	10045024	rs396190	G	A	15263.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	10045147	rs448327	A	G	8652.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	10050947	rs1054561	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	10050960	rs1054565	A	G	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	10051053	rs10495576	G	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	10053412	rs12467598	C	T	8520.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	10059097	rs2303921	A	C	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=1.732;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:267,121:0.31:388
chr2	10059329	rs193108127	T	G	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr2	10059770	rs1820965	G	T	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	10094992	rs2303918	A	G	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr2	10126123	rs1835424	A	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:56,19:0.25:75
chr2	10126330	rs2303920	G	A	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.600;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:180,65:0.27:245
chr2	10126416	rs16867274	A	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:51,19:0.27:70
chr2	10130973	rs12475243	T	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:76,47:0.38:123
chr2	10133284	rs12618788	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=5.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.608;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr2	10133843	rs12472800	C	T	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr2	10139018	rs189326991	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	10140651	rs2163338	A	G	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-1.357;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:181,102:0.36:283
chr2	10183748	rs372827624	TGCC	T	788.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	10183970	rs115226520	A	G	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=1.052;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,44:0.62:71
chr2	10188649	rs11687357	A	T	9766.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr2	10223894	rs7569312	T	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:52,103:0.66:155
chr2	10225241	rs6432058	C	T	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	10226306	rs34098251	G	GC	1243.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr2	10262920	rs1130609	T	G	3860.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:125,182:0.59:307
chr2	10281903	rs5829249	G	GC	5259.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	10332618	.	G	A	1677.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr2	10332876	rs56228505	AC	A	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr2	10563236	rs55737425	G	A	2922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-1.261;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:63,131:0.68:194
chr2	10566792	rs2270306	C	G	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:113,162:0.59:275
chr2	10566804	rs2270307	A	G	3941.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:132,185:0.58:317
chr2	10595578	rs6432097	T	C	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:48,111:0.70:159
chr2	10712278	rs3732114	C	T	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=0.559;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:76,63:0.45:139
chr2	10717806	rs2287059	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:110,119:0.52:229
chr2	10729897	rs759403	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr2	10740841	rs4668692	T	C	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=7.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.11;ReadPosRankSum=0.170;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	10741141	rs10181806	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	10743153	rs2287061	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr2	10743191	rs2287062	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr2	10743319	rs2287063	T	C	1555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.752;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:91,84:0.48:175
chr2	10747246	rs6744854	C	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	10747271	rs6759740	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr2	10747298	rs71392244	A	AT	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr2	10762302	rs70953325	TA	T	7949.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	10774531	rs77767350	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	10784491	rs3732111	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr2	10784528	rs3821196	T	C	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-0.361;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr2	10799467	rs35723682	TG	T	39.25	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	10808776	rs55925118	C	CAA	2816.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	10813782	rs6748766	T	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	10908893	rs1198849	A	G	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:81,128:0.61:209
chr2	10911891	rs1198850	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:20,65:0.76:85
chr2	10912092	rs12999992	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr2	10915020	rs2969881	A	G	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:75,194:0.72:269
chr2	10917594	rs3856467	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	10922516	rs1686482	A	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr2	10923353	rs17364812	T	C	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.695;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:152,82:0.35:234
chr2	10924524	rs1198873	T	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	10927345	rs1686510	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	10928694	rs11409434	G	GA,GAA	516.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.009;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.39;MQRankSum=0.872;QD=10.13;ReadPosRankSum=1.271;SOR=1.897;set=HC	GT:AD:AF:DP	1/2:12,23,16:0.45,0.31:51
chr2	10928710	rs1734433	A	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chr2	10928777	rs2952626	A	C	7368.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	10928906	rs1734432	T	C	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	10928962	rs1734431	A	G	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	10929133	rs1734430	A	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	10929867	rs11904084	T	C	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	10930050	rs1686514	A	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	10930106	rs199881762	ATTT	A	492.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=27.37;ReadPosRankSum=0.589;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr2	10930903	rs4807	T	C	5745.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:168,260:0.61:428
chr2	10931001	rs1614107	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	10932082	rs1734421	T	C	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	10933195	rs17455876	T	A	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-1.477;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:188,80:0.30:268
chr2	10933249	rs4799	C	T	4409.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:94,203:0.68:297
chr2	10933346	rs143770934	T	TAGGC	1030.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr2	10937037	rs1734343	T	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr2	10937065	rs1734344	T	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr2	10937409	rs1686444	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	10938043	rs56346617	T	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	10942567	rs1686434	G	A	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	10942687	rs4758	C	T	11925.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr2	10950284	rs1734449	G	C	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	10952648	rs116156133	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.486;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr2	10952790	rs6726687	T	C	9389.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr2	10961184	rs1686497	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	10977585	rs76076331	C	T	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:102,47:0.32:149
chr2	10987581	rs73174567	T	A	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.299;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:36,78:0.68:114
chr2	10994418	rs1198852	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	11053020	rs3732104	A	G	9886.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	11053740	rs3732105	C	T	11480.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr2	11264830	rs7560331	G	A	12248.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr2	11273407	.	GTC	G	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.465;QD=0.75;ReadPosRankSum=-0.210;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:575,109:0.16:684
chr2	11280500	.	TAAA	T	1061.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-1.397;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:20,44:0.69:64
chr2	11295226	rs148805827	C	CG	540.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	11295247	.	G	GGGGCGAGGCGAGGTTGGCCAGA	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=-0.655;QD=9.41;ReadPosRankSum=-1.948;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	11295464	.	A	C	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.869;SOR=0.138;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	11295867	rs7598570	G	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	11300732	rs2271622	C	T	18324.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr2	11300869	rs6432182	T	C	8411.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.175;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	11300927	.	TAAAA	T,TA	2230.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=29.35;SOR=2.345;set=HC	GT:AD:AF:DP	1/2:1,26,49:0.34,0.64:76
chr2	11304471	.	A	ATATT	959.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=62.55;MQRankSum=0.467;QD=15.23;ReadPosRankSum=1.754;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:14,49:0.78:63
chr2	11312181	rs12987956	G	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	11312224	rs3732103	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	11348364	rs141148984	C	CTAACT	893.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	11348609	rs5829297	CAAAT	C	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	11356190	rs726843	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	11357100	rs57554471	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	11359031	rs9808228	G	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	11359120	rs2230774	G	T	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	11680896	rs34137466	CAA	C	1447.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	11702661	rs10929757	A	C	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	11718591	rs1529868	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:64,32:0.33:96
chr2	11725179	rs55893544	G	GA	1863.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:58,117:0.67:175
chr2	11725241	rs12470971	G	A	6373.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:155,299:0.66:454
chr2	11727507	rs13394619	G	A	7072.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:209,327:0.61:536
chr2	11731774	rs2358040	T	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr2	11738091	rs1435547	T	C	10821.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr2	11738765	rs1865575	C	T	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	11741193	rs11681838	C	A	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	11742458	rs72772088	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	11752635	rs2304399	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	11755443	rs2252958	T	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr2	11757009	rs6735957	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	11757023	rs892868	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr2	11774324	rs2304402	G	A	12969.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr2	11778184	rs33962728	G	A	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	11779005	rs149183693	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr2	11810095	rs6432225	G	A	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	11817812	rs4669769	G	C	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:88,149:0.63:237
chr2	11853774	rs12465629	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	11853988	rs12465630	A	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:36,108:0.75:144
chr2	11854012	rs10182021	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-1.478;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr2	11854099	rs4668739	T	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr2	11905636	rs3214670	GT	G	3810.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=21.65;SOR=1.735;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	11905876	rs10209969	C	T	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,75:0.66:113
chr2	11908138	rs115718398	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.624;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	11924950	rs3795974	T	C	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	11932173	rs7561070	G	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	11936798	rs2577264	A	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	11944746	rs111652164	TG	T	1218.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr2	11945108	.	GT	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=1.001;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr2	11959905	rs2716609	T	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr2	12877501	rs5829384	G	GA	14444.73	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr2	13554931	rs73916272	A	G	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=0.825;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:41,74:0.64:115
chr2	15319022	rs3731995	C	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr2	15319070	rs5829492	TA	T	1541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.172;QD=11.51;ReadPosRankSum=0.266;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:24,110:0.82:134
chr2	15326834	rs2302940	T	C	6373.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:154,287:0.65:441
chr2	15372562	rs6710817	C	T	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,111:0.67:165
chr2	15378808	rs34080125	C	G	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	15378822	rs140225141	G	GAATT	736.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	15415525	rs3755127	C	T	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:15,62:0.81:77
chr2	15417280	rs3214432	ATT	A	1150.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr2	15417285	rs75287593	T	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr2	15427173	rs4668892	C	T	3772.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:91,173:0.66:264
chr2	15448311	rs1318102	A	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:97,130:0.57:227
chr2	15491994	rs10605991	GCACACACACA	G	6318.73	.	AC=1;AF=0.500;AN=2;DB;DP=364;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:96,197:0.67:293
chr2	15493881	rs2277915	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:46,68:0.60:114
chr2	15496430	rs35489395	T	C	4672.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:151,221:0.59:372
chr2	15514902	rs146709902	T	C	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr2	15519992	rs2058866	G	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr2	15523266	rs6756934	A	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	15523307	rs3834149	TA	T	843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.361;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:12,48:0.80:60
chr2	15523549	rs3755129	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr2	15533689	rs2380650	T	C	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr2	15533734	rs139494535	G	GAAATGAAAGCGTATGTCTACAC	1970.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr2	15533779	rs9710889	G	A	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.998;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.866;QD=12.29;ReadPosRankSum=-0.824;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:70,96:0.58:166
chr2	15533884	rs9710962	C	A	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr2	15533895	rs13417550	A	G	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.18;ReadPosRankSum=1.392;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr2	15533899	rs11689153	A	G	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.37;ReadPosRankSum=1.716;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	15536509	.	G	GA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.637;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:76,20:0.21:96
chr2	15564718	rs10929367	T	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr2	15567649	rs3796002	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	15601287	rs11411624	A	AT	2518.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:53,75:0.59:128
chr2	15601441	rs7590340	C	T	4300.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:119,198:0.62:317
chr2	15601574	rs7590458	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	15607842	rs4668909	T	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=2.089;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:38,41:0.52:79
chr2	15608013	rs4668910	C	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	15614404	rs13014906	T	C	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:61,125:0.67:186
chr2	15615910	rs1990754	A	G	4987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=0.062;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:109,238:0.69:347
chr2	15616013	rs1990755	C	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:42,114:0.73:156
chr2	15616030	rs1990756	C	T	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=0.192;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:31,85:0.73:116
chr2	15618339	rs1125534	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr2	15623608	rs10201564	C	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	15644107	rs3732002	C	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.98;ReadPosRankSum=0.779;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr2	15644111	rs3732003	C	T	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.61;ReadPosRankSum=-0.134;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:19,38:0.67:57
chr2	15644401	rs2287265	C	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,88:0.71:124
chr2	15674686	rs13029846	T	C	2960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=1.617;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:80,145:0.64:225
chr2	15676686	rs10208972	G	A	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=1.678;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:63,108:0.63:171
chr2	15678368	rs7595512	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr2	15678482	rs2380657	T	C	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr2	15678501	rs66736557	GA	G	1358.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr2	15679609	rs2058868	A	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	15691791	rs55977282	G	T	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr2	15691886	rs7572131	G	A	358.78	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr2	15694164	rs34789730	T	TA	3424.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:54,97:0.64:151
chr2	15768981	rs62122280	C	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	15840505	rs4668460	C	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,74:0.56:133
chr2	15840522	rs4668461	G	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:79,98:0.55:177
chr2	15840645	rs4668962	T	C	3554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=0.110;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:84,162:0.66:246
chr2	15841230	rs1421610	T	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	15841288	rs1421609	G	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	17696573	rs834514	C	T	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.213;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:93,19:0.17:112
chr2	17698678	rs665312	A	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:82,41:0.33:123
chr2	17836722	.	T	TCA	657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.535;QD=21.22;ReadPosRankSum=0.117;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr2	17884495	rs1065381	C	T	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.640;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr2	17888457	rs6734462	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr2	17890091	rs10657992	G	GTATA	436.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr2	17897488	rs35195207	T	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:124,68:0.35:192
chr2	17898326	rs12469221	C	T	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr2	17913266	rs2052746	A	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	17927275	rs12474069	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr2	17941423	rs2555072	T	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr2	17942775	rs1812152	T	A	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:123,190:0.61:313
chr2	17954027	rs300175	G	A	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	17954140	rs300176	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	17954421	rs300177	C	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	17954647	rs300178	T	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	17959420	rs10535305	TAC	T	274.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.000;QD=12.50;ReadPosRankSum=1.169;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	17959441	rs10535306	GTA	G	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=-1.281;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr2	17959452	.	TATAC	T	294	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=47;MMLQ=28;MQ=54.17;NF=0;NR=13;PP=294;QD=23.4615384615;SC=TATATATATATATACACACAC;SbPval=1.0;Source=Platypus;TC=13;TCF=0;TCR=13;TR=13;WE=17959463;WS=17959442;set=Platypus	GT:AD:AF:DP	1/0:0,13:1.00:13
chr2	17962450	rs300168	A	G	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:52,136:0.72:188
chr2	17962518	rs300169	C	T	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:36,113:0.76:149
chr2	17962993	rs149936944	CAAGTT	C	5170.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:81,135:0.62:216
chr2	17963311	rs78136924	C	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	17998025	rs34069439	A	T	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:117,66:0.36:183
chr2	17998095	rs35858730	C	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:156,85:0.35:241
chr2	17998331	rs13001625	T	C	5765.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;set=Intersection	GT:AD:AF:DP	0/1:564,310:0.35:874
chr2	18112473	rs4240213	G	A	8274.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	18113623	rs4832524	A	G	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:214,117:0.35:331
chr2	18113789	rs3747515	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr2	18757501	rs3902946	G	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-1.500;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:61,28:0.31:89
chr2	18765728	rs35590292	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr2	18768850	rs16985306	A	G	2153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.369;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=4.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.377;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:173,115:0.40:288
chr2	18770540	rs6720633	G	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr2	20096936	rs7563410	C	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	20097874	rs12328613	T	C	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:98,59:0.38:157
chr2	20101487	rs2304589	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:102,50:0.33:152
chr2	20101717	rs2304588	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.58;ReadPosRankSum=-0.172;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr2	20130145	rs28502265	T	G	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:102,80:0.44:182
chr2	20130259	rs56395266	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:119,79:0.40:198
chr2	20130970	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-1.214;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr2	20131184	rs1191779	C	A	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	20131987	rs4294960	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	20135283	rs6741091	T	C	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr2	20137864	rs2293671	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	20160209	rs10169398	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	20160250	rs12996974	G	C	666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=-1.444;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:13,32:0.71:45
chr2	20173255	rs10153717	A	C	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	20174175	.	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.156;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.671;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:93,23:0.20:116
chr2	20189015	rs1060742	T	C	2109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=2.011;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:255,124:0.33:379
chr2	20189089	rs3731663	C	T	5979.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	20192696	rs7569975	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	20192931	rs35973216	G	A	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr2	20194036	rs3820949	G	C	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	20201922	rs55977150	T	C	344.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	20202811	rs11681705	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	20202929	rs28452699	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr2	20205423	rs5829721	A	AAAAG	3305.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	20205680	rs28401180	C	T	13958.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr2	20205848	rs28598872	G	A	11271.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr2	20233135	rs1191824	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	20233929	rs936509	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	20302490	.	GAGA	G	2921.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.855;QD=24.35;ReadPosRankSum=0.387;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:40,80:0.67:120
chr2	20302527	rs12612373	C	T	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=-1.746;QD=3.52;ReadPosRankSum=-1.456;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:139,59:0.30:198
chr2	20320489	rs376838936	AAAGG	A	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.85;ReadPosRankSum=-2.931;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr2	20403794	rs10205485	A	T	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	20403949	rs2230924	C	T	7653.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr2	20405004	rs3732166	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	20405050	rs6531225	A	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	20423154	rs4666375	A	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	20424062	rs138986173	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	20455176	rs111928251	GT	G	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=1.939;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:7,34:0.83:41
chr2	20462852	rs3796066	G	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	20525948	rs9306890	T	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	20699667	rs342089	C	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	20700900	rs342088	A	G	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	20798006	rs34750020	CT	C	1251.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:66,40:0.38:106
chr2	20818454	rs3732152	T	A	3970.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:104,184:0.64:288
chr2	20818517	rs3732150	T	C	5501.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:128,255:0.67:383
chr2	20818764	rs3732149	C	T	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:299,150:0.33:449
chr2	20818883	rs35579164	G	C	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:239,117:0.33:356
chr2	20822218	rs4666444	T	C	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	20823612	rs13030108	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	20823724	rs6531248	T	C	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	20823850	rs6733419	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.40;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	20823850	.	TGCTCTCTC	CGCTCTCTC,CGCTCTCTT	222	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=5;MMLQ=23;MQ=60.0;NF=9,4;NR=21,10;PP=221,222;QD=8.52570708491;SC=ATGCCATGGCTGCTCTCTCTC;SbPval=0.56;Source=Platypus;TC=30;TCF=9;TCR=21;TR=30,14;WE=20823866;WS=20823840;set=Platypus	GT:AF:DP	0/1:1.00:30
chr2	20823858	rs2305459	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=0.857;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	20824475	rs116314157	C	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:70,101:0.59:171
chr2	20824498	rs2305458	C	T	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	20824691	rs17663045	C	T	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr2	20838222	rs3796065	C	T	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:359,162:0.31:521
chr2	20840851	rs148915944	C	T	9261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.178;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:228,425:0.65:653
chr2	20841059	rs4666449	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	20845273	rs2304423	G	A	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	20867122	.	G	GGGCGGC,GGGCGGCGGC	1002.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.78;SOR=0.859;set=HC	GT:AD:AF:DP	1/2:0,5,19:0.21,0.79:24
chr2	20870579	rs13013489	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	20870820	rs78872016	G	T	6289.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	20871190	rs4666457	A	C	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	21225281	rs1042034	C	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	21232195	rs693	G	A	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr2	21232803	rs584542	TG	CA	8933.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	21235475	rs568413	T	C	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	21236482	rs488329	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	21250914	rs679899	G	A	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:85,40:0.32:125
chr2	21252365	rs67556837	GAGGA	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.291;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr2	21255573	rs10701091	C	CCATCT	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	21263900	rs1367117	G	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr2	21266774	rs17240441	GGCAGCGCCA	G	1482.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr2	21360583	rs312966	A	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:71,51:0.42:122
chr2	23862187	rs540290	C	G	9205.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	23865260	rs642931	T	C	17011.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr2	23865908	rs527176	G	C	6584.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr2	23919375	rs3795942	C	T	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	23925980	rs12466745	T	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	23926659	rs3795948	T	C	9369.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr2	24009163	rs9636434	A	G	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	24042550	rs2879639	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	24055058	rs10432637	G	C	15676.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr2	24103432	rs374010112	CA	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.582;QD=1.66;ReadPosRankSum=-0.105;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr2	24108652	rs7579201	T	C	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	24110911	rs34093830	G	GA	1035.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=9.748;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=0.800;SOR=2.227;set=HC	GT:AD:AF:DP	1/1:9,56:0.86:65
chr2	24194314	rs1533440	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	24246175	rs12989842	C	T	4875.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	24246679	rs925228	A	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	24255862	rs10179142	C	G	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	24369674	rs11693860	C	T	8561.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	24384424	rs4665667	T	C	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	24387178	rs113322110	G	GC	2375.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	24388096	rs4665668	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	24390517	rs2288072	G	A	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	24395269	rs918802	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	24395294	rs918803	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	24395506	rs889830	T	C	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	24398281	rs2042467	T	G	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	24398446	rs2042468	A	T	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.79;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	24398446	.	AGATAACGTG	TGATAACGAA,TGATAACGTG	2030	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=13,48;NR=17,54;PP=815,2030;QD=29.2822624954;SC=AATGGAGGTGAGATAACGTGG;SbPval=0.69;Source=Platypus;TC=103;TCF=48;TCR=55;TR=30,102;WE=24398463;WS=24398436;set=Platypus	GT:AF:DP	0/1:0.29:103
chr2	24398454	rs116450336	TG	AA	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.756;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.780;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:72,39:0.35:111
chr2	24402127	rs61193015	C	CAA	2847.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	24426438	rs112277321	C	G	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr2	24432211	rs2303293	C	T	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	24432620	rs2303294	A	G	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	24432667	rs2303295	C	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	24440997	rs2551183	A	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	24475205	rs4450560	T	C	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	24484150	rs4665680	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	24498839	rs4411652	T	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.42;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	24521493	rs7559133	C	T	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	24521766	rs6707600	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	24550867	.	CAA	C,CA	3551.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=266;set=Intersection	GT:AF:DP	1/2:0.19,0.71:256
chr2	24896389	rs4665712	T	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	24905927	rs11125744	G	C	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	24920663	rs41281513	A	G	2143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=0.541;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:73,103:0.59:176
chr2	24933689	rs7593430	A	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	24952712	rs375818965	CT	C	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=4.429;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-1.568;QD=5.60;ReadPosRankSum=0.281;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:43,45:0.51:88
chr2	24952740	rs11439247	C	CT	2663.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	24974945	rs11125763	T	G	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	25037042	rs1003064	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	25038564	rs147672058	T	G	6748.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:148,296:0.67:444
chr2	25039804	rs2099505	G	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	25040423	rs10178420	G	A	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	25046090	rs1127568	T	C	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.553;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr2	25046355	rs4665273	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.350;QD=10.82;ReadPosRankSum=0.766;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	25046361	rs5829941	A	AT,ATT	535.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.436;QD=24.35;ReadPosRankSum=1.737;SOR=0.836;set=HC	GT:AD:AF:DP	1/2:1,11,10:0.50,0.45:22
chr2	25047408	rs7604576	A	G	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:173,69:0.29:242
chr2	25048847	rs2289090	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:130,48:0.27:178
chr2	25050977	rs7566416	T	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.101;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:122,48:0.28:170
chr2	25057298	rs2278486	C	G	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=18.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.211;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:8,29:0.78:37
chr2	25061270	rs145368937	GGGGTGGGGT	G	873.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr2	25064193	rs2241759	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr2	25100738	rs10865315	C	A	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.033;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:111,40:0.26:151
chr2	25100902	rs2033656	C	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr2	25141538	rs11676272	A	G	5939.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:659,333:0.34:992
chr2	25181488	rs12986502	T	C	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:215,124:0.37:339
chr2	25194741	rs7593864	G	A	10357.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:186,472:0.72:658
chr2	25314186	rs2918630	T	C	2573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-2.891;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:77,121:0.61:198
chr2	25458546	rs2304429	C	T	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.416;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:151,59:0.28:210
chr2	25462327	rs72810046	C	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr2	25463483	rs2289195	G	A	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:54,109:0.67:163
chr2	25466888	rs2289093	G	T	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr2	25469502	rs2276598	C	T	5760.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:108,252:0.70:360
chr2	25469913	rs2276599	C	T	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr2	25472784	rs11681447	C	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	25551692	rs12995245	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr2	25650329	rs75591229	A	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr2	25655772	rs7583475	T	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	25656880	rs1395949	C	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	25656889	rs11451153	G	GT,GTT	1740.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.434;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=-0.097;SOR=1.062;set=HC	GT:AD:AF:DP	1/2:9,65,25:0.66,0.25:99
chr2	25754235	rs539879	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr2	25973309	rs10178552	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:69,37:0.35:106
chr2	25990640	rs17680828	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr2	25994412	rs71399322	A	AG	2345.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:205,102:0.33:307
chr2	26082046	rs34236477	GT	G	216.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	26082057	rs13422450	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.96;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	26082212	rs13425195	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,16:0.33:49
chr2	26161226	rs11388254	C	CA,CAA	956.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.253;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.497;QD=13.87;ReadPosRankSum=-0.008;SOR=0.452;set=HC	GT:AD:AF:DP	1/2:12,40,17:0.58,0.25:69
chr2	26174882	rs41285967	T	C	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-1.729;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:55,32:0.37:87
chr2	26177198	rs17047211	A	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:191,99:0.34:290
chr2	26203400	rs199625387	C	G	7961.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:160,347:0.68:507
chr2	26203678	rs1465878	T	C	12436.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr2	26204640	rs6721440	G	A	11282.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,437:1.00:437
chr2	26321526	rs11678157	T	C	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	26350136	rs2289022	G	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	26357748	rs2243834	G	T	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	26395074	rs184562110	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=1.874;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:102,53:0.34:155
chr2	26399214	rs4665830	G	A	6728.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:179,308:0.63:487
chr2	26405985	rs10779956	A	G	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,73:0.74:99
chr2	26408064	rs4665833	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	26415088	rs34898931	TA	T	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-0.039;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr2	26415429	rs5001914	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr2	26416301	rs7582341	A	G	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr2	26417533	rs1865324	C	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	26420708	rs13387855	T	G	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.230;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:36,71:0.66:107
chr2	26420809	rs2289019	G	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	26454996	rs7593175	A	G	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr2	26455002	rs35746418	C	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr2	26455127	rs11552518	G	A	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.760;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:106,64:0.38:170
chr2	26457267	rs3892649	T	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	26467347	rs62128457	C	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,37:0.48:77
chr2	26477125	rs147970487	G	GACT	1882.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	26500101	.	CTT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=0.817;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	26501953	rs7604564	C	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:57,19:0.25:76
chr2	26502875	rs1056389	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	26505858	rs17528590	A	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr2	26507724	rs17528653	T	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.803;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr2	26512733	rs1056632	T	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:175,78:0.31:253
chr2	26512957	rs1056471	G	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	26532491	rs2007556	G	T	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr2	26532735	rs3856397	G	A	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr2	26533023	rs3851967	C	T	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:94,199:0.68:293
chr2	26534801	rs7568529	G	A	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr2	26536299	rs11886746	C	G	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:238,118:0.33:356
chr2	26536694	rs2052937	C	T	3474.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:79,162:0.67:241
chr2	26537499	rs10187359	A	C	8994.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	26606347	rs13030294	T	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	26607992	rs934280	T	C	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	26625042	rs13003230	C	A	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	26647277	rs7423300	T	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	26652671	rs4356622	A	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	26653457	rs4450561	G	A	11756.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr2	26663187	rs138497746	T	TTGTG	1472.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=43.32;ReadPosRankSum=1.253;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,31:0.91:34
chr2	26663215	rs56218945	A	G	1530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-0.340;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:2,60:0.97:62
chr2	26667615	rs939820	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	26671092	rs34461558	C	CA	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.974;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:31,64:0.67:95
chr2	26671544	rs4072407	A	G	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	26676322	rs1402962	A	G	6331.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	26677810	rs2280516	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	26683874	rs111033329	C	T	4247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-1.822;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:93,172:0.65:265
chr2	26724725	rs6547079	T	G	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.750;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chr2	26726752	rs884390	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:260,106:0.29:366
chr2	26733500	rs939817	C	T	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:180,98:0.35:278
chr2	26739247	rs7575020	T	A	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,80:0.69:116
chr2	26739423	rs11687696	T	C	1808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=0.987;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:172,103:0.37:275
chr2	26741961	rs13031859	G	A	6639.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:149,288:0.66:437
chr2	26750557	rs10865425	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	26750645	rs1879760	G	A	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:90,162:0.64:252
chr2	26781247	rs4665880	G	C	10225.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:193,454:0.70:647
chr2	26795217	rs59491712	GT	G	760.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:5,36:0.88:41
chr2	26795235	rs13004284	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.588;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	26798893	rs13002673	A	T	8711.77	.	AC=1;AF=0.500;AN=2;DB;DP=1498;set=Intersection	GT:AD:AF:DP	0/1:987,507:0.34:1494
chr2	26799031	rs2272464	G	A	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:286,120:0.30:406
chr2	26800422	rs1053807	G	A	5453.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:135,247:0.65:382
chr2	26801586	rs1148956	G	A	2201.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:30,94:0.76:124
chr2	26802392	rs2272467	A	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr2	26804008	rs744538	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	26804122	rs744539	T	G	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:104,74:0.42:178
chr2	26804143	rs744540	T	C	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	26804218	rs935171	G	A	12210.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr2	26804247	rs935172	T	C	3269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.486;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:293,186:0.39:479
chr2	26818006	rs1148962	T	C	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr2	26818021	rs1148963	C	T	9171.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr2	26846282	rs1615551	T	C	3341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.555;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:88,155:0.64:243
chr2	26951449	rs1663002	G	A	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	26997031	rs13007156	G	A	4646.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:90,209:0.70:299
chr2	27014980	rs12992046	T	C	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.072;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:158,74:0.32:232
chr2	27015118	rs13014800	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr2	27015141	rs35344721	G	GC	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr2	27015903	rs2289017	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr2	27015969	rs2289018	G	A	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-1.607;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:109,55:0.34:164
chr2	27121394	rs79644076	G	A	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:278,149:0.35:427
chr2	27157396	rs920437	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.652;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=0.494;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	27157400	rs920436	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.22;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	27163044	rs3739085	T	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-1.080;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr2	27164806	rs3820823	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=1.455;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr2	27167784	rs3739088	C	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,38:0.84:45
chr2	27169637	rs3835821	TC	T	448.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr2	27169842	rs11126784	C	A	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:256,132:0.34:388
chr2	27246285	rs10865456	C	T	7920.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr2	27249245	rs3754733	A	G	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	27259794	rs13021112	G	A	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	27261329	rs11690454	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	27262763	rs146244277	GGGA	G	10189.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	27263122	rs1866654	T	C	13185.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr2	27276202	rs3806520	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	27279416	rs2384570	A	G	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	27280092	rs6711384	T	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	27280127	rs6721395	G	A	5220.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	27290525	rs11681145	A	G	10813.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr2	27291661	rs7575465	G	A	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	27292651	rs10865461	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	27293150	rs1053609	G	T	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr2	27302165	rs2289360	T	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	27303755	rs2736976	A	G	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	27307769	rs2304682	G	C	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	27319826	rs9677784	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	27323468	rs4665371	A	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	27324036	rs1057394	G	A	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	27324340	.	G	A	1250	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=4;HapScore=1;MMLQ=28;MQ=58.04;NF=21;NR=27;SC=CTCTGGGCCCGGGGGCATCTC;SbPval=0.24;Source=Platypus;TC=129;TCF=69;TCR=60;TR=48;WS=27324330;set=Platypus	GT:AD:AF:DP	1/0:81,48:0.37:129
chr2	27324724	rs2384571	G	C	10842.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr2	27324751	rs2384572	G	T	13256.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr2	27351279	rs1866561	G	A	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	27351948	rs6715286	T	G	10041.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr2	27354173	rs11126874	C	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	27355454	rs4665948	A	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	27359887	rs11121	C	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr2	27360773	rs61741796	G	A	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr2	27424496	rs1006898	G	A	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	27424636	rs1395	G	A	12329.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr2	27426514	rs1275521	G	C	9629.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	27428147	rs1298361	A	G	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	27428295	rs1275524	A	G	23853.77	.	AC=2;AF=1.00;AN=2;DB;DP=921;set=Intersection	GT:AD:AF:DP	1/1:0,920:1.00:920
chr2	27428702	rs1275525	A	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.61;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	27428815	rs1275526	C	G	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	27428877	rs1275527	C	G	11918.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.546;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=-0.647;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:1,468:1.00:469
chr2	27435250	rs1275533	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	27435374	rs11608	G	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:80,49:0.38:129
chr2	27440785	rs1275536	C	T	24453.77	.	AC=2;AF=1.00;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	1/1:0,892:1.00:892
chr2	27448171	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.230;QD=2.37;ReadPosRankSum=0.715;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	27457157	.	G	A	1175.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr2	27466196	rs112312126	C	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:158,68:0.30:226
chr2	27466258	rs5830040	CT	C	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.120;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr2	27481460	rs58965570	C	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr2	27497815	rs60631624	T	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	27505782	rs62130709	C	T	3983.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:76,173:0.69:249
chr2	27522543	rs141577308	C	CCTAT	4240.73	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:9,104:0.92:113
chr2	27528692	rs4665963	T	C	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr2	27532870	rs62130714	A	G	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:76,137:0.64:213
chr2	27535311	rs5830041	T	TG	14638.73	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr2	27549833	rs35568684	CA	C	786.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:5,49:0.91:54
chr2	27550967	rs1049817	A	G	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	27556721	rs3739095	G	A	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	27558252	rs11684134	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	27566520	rs11689803	T	A	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	27589810	rs2280737	T	C	11647.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr2	27591804	rs80051818	T	C	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	27592090	.	T	TA	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.355;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.279;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr2	27592423	rs7602534	C	T	8512.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	27595756	rs1528533	G	C	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	27597805	rs3215365	CTT	C	2212.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	27598097	rs4665972	T	C	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	27599132	rs12475426	G	A	10871.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr2	27600239	rs13472	G	A	8743.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr2	27606098	rs2384629	A	G	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	27656822	rs3214499	G	GA	5850.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	27659491	rs780102	T	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	27659824	rs116758259	T	G	4490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=1.571;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:103,184:0.64:287
chr2	27659832	.	C	CT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.753;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:248,60:0.19:308
chr2	27663215	rs1260341	T	A	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	27663416	rs1260342	G	T	9760.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,363:1.00:364
chr2	27665361	rs780112	C	G	11541.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:1,445:1.00:446
chr2	27667297	rs4803	A	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	27667520	rs10635082	T	TTTTG	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=43.19;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	27669341	rs11333597	AT	A	4879.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	27669365	rs11430923	G	GT	1368.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:4,68:0.94:72
chr2	27670307	rs11126999	G	A	5557.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	27672456	rs77876269	C	T	4130.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:137,183:0.57:320
chr2	27676287	rs56076827	A	T	8465.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	27677691	rs780104	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	27681598	rs780106	A	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	27684734	rs780107	A	G	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	27685388	rs780110	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	27688601	rs1647276	C	T	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	27706640	rs2272417	T	C	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	27708007	.	TA	T	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.032;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:117,44:0.27:161
chr2	27715207	rs8395	T	A	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	27715416	rs2303369	C	T	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	27716494	rs704795	G	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	27721971	rs813592	T	C	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	27722416	rs1260320	G	A	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	27728777	rs2293572	C	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	27729480	rs2293571	G	A	8670.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr2	27730940	rs1260326	T	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	27731212	rs3817588	T	C	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr2	27802927	.	G	C	3372.77	.	AC=1;AF=0.500;AN=2;DP=239;set=Intersection	GT:AD:AF:DP	0/1:79,158:0.67:237
chr2	27857992	rs4666009	T	A	5879.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:161,265:0.62:426
chr2	27858112	rs76683865	G	A	6088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.315;QD=12.76;ReadPosRankSum=1.751;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:174,303:0.64:477
chr2	27858167	.	C	CTT	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=10.586;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-0.772;SOR=2.255;set=HC	GT:AD:AF:DP	0/1:47,50:0.52:97
chr2	27861707	rs11692692	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.027;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	27864089	rs146979490	A	G	1995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=1.011;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:37,92:0.71:129
chr2	27865416	.	T	TA	3888.73	.	AC=1;AF=0.500;AN=2;DP=328;set=Intersection	GT:AD:AF:DP	0/1:94,189:0.67:283
chr2	27876641	rs74965659	C	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr2	27878490	rs148624419	A	G	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr2	27883958	rs6756254	C	T	3302.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:64,143:0.69:207
chr2	27884878	rs1569152	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	27886820	rs58106741	G	T	5227.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:118,230:0.66:348
chr2	27887034	rs9678851	C	A	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:234,134:0.36:368
chr2	27891453	rs142886666	A	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr2	27892312	rs144945988	C	T	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr2	27905388	rs373815335	ATTCT	A	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.87;ReadPosRankSum=-1.754;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	27907817	rs75617903	G	A	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:99,136:0.58:235
chr2	27907828	rs76388486	C	T	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:124,155:0.56:279
chr2	27997196	rs146922844	T	C	6749.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:140,309:0.69:449
chr2	28065875	rs34139736	C	G	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.222;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr2	28069713	rs11901133	T	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	28084530	rs141374929	T	TGG	370.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;QD=30.89;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	28236120	rs11127132	C	T	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	28464369	.	C	CT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.373;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr2	28464435	rs6737817	T	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	28615812	rs72195155	GGA	G	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.976;QD=2.99;ReadPosRankSum=-0.166;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr2	28718897	rs4665423	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	28748857	rs4666085	T	C	7785.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	28748916	rs10181687	A	C	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	28752498	rs6728486	T	C	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	28752555	rs4473343	T	C	8679.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	28752727	rs6710800	C	G	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	28752741	rs6725577	A	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	28761257	rs7589169	A	G	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	28761282	rs7589254	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	28761981	rs6753929	G	C	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr2	28763374	rs11127162	G	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:63,53:0.46:116
chr2	28771452	rs56019402	CTA	C	1557.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	28771624	rs11680168	T	G	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	28771825	rs185895091	C	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr2	28771897	rs11680304	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	28785754	rs7560628	G	C	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	28788428	rs34237604	AG	A	399.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	28789643	rs10186460	T	C	9907.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:241,454:0.65:695
chr2	28802355	rs12466173	G	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:78,39:0.33:117
chr2	28802473	rs72863332	C	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:151,78:0.34:229
chr2	28804835	rs5830085	GA	G	793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=4.502;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.444;QD=5.84;ReadPosRankSum=0.335;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:74,62:0.46:136
chr2	28805410	rs4666102	C	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.923;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:67,22:0.25:89
chr2	28805465	rs79974360	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.416;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr2	28808539	rs13393932	G	A	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr2	28812285	rs12468715	T	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.312;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-1.660;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr2	28812982	rs4666105	C	T	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:122,55:0.31:177
chr2	28814460	rs113057936	T	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr2	28816425	rs10176136	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	28816814	rs11462230	C	CTT,CTTT	2778.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=3.643;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.468;QD=15.27;ReadPosRankSum=0.089;SOR=0.334;set=HC	GT:AD:AF:DP	1/2:22,88,72:0.48,0.40:182
chr2	28816948	rs4665429	C	T	15445.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr2	28821613	rs35746006	C	T	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:83,126:0.60:209
chr2	28821662	rs7557359	C	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr2	28824793	rs7601771	C	G	4445.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:137,208:0.60:345
chr2	28825607	rs67964454	G	A	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:124,193:0.61:317
chr2	28827026	rs7573051	T	C	3189.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:57,145:0.72:202
chr2	28827625	rs34289907	C	T	4493.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:105,206:0.66:311
chr2	28827644	rs36116681	A	G	3848.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr2	28841021	rs1881256	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	28843871	rs35800423	G	C	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr2	28843909	rs35166577	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr2	28849435	rs10186023	T	C	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr2	28849473	rs899149	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	28853352	rs6713038	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr2	28853377	rs6731155	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,70:0.76:92
chr2	28855088	rs3071742	C	CT	578.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr2	28855918	rs34314459	A	AG	6569.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:2,247:0.99:249
chr2	28865675	rs114156553	G	T	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:227,117:0.34:344
chr2	28865760	rs2272387	T	C	6106.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:142,275:0.66:417
chr2	28865968	rs57817040	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=1.085;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	28865977	rs1052358	C	T	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.86;ReadPosRankSum=1.085;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	28975107	rs2276547	G	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	29001691	rs1128416	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=1.553;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	29041877	rs13009357	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	29045323	rs4436918	C	T	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	29052256	rs12998251	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	29052283	rs72449240	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.92;ReadPosRankSum=0.769;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	29087799	rs13030945	C	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr2	29087814	rs55785599	C	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr2	29092679	rs4233729	T	C	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:127,204:0.62:331
chr2	29092850	rs4666122	G	T	6428.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:189,291:0.61:480
chr2	29129300	rs36066576	AT	A	1471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.770;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=3.351;QD=6.34;ReadPosRankSum=0.119;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:93,139:0.60:232
chr2	29129418	rs11688605	A	G	4279.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:86,201:0.70:287
chr2	29135468	rs6715296	C	G	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	29136489	rs4666132	G	T	2704.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:73,127:0.64:200
chr2	29136623	rs4666133	T	C	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:60,79:0.57:139
chr2	29136653	rs4666134	T	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr2	29136685	rs12472068	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	29140711	rs4389288	G	A	3536.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:62,162:0.72:224
chr2	29145725	rs9653591	G	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	29152376	rs11685826	A	T	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.10;ReadPosRankSum=3.124;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:22,36:0.62:58
chr2	29152456	rs1140697	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:190,89:0.32:279
chr2	29161010	rs4233731	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	29169612	rs3087649	T	C	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	29226222	rs4666160	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr2	29226498	rs12613325	G	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:176,109:0.38:285
chr2	29226512	rs12623297	A	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:141,90:0.39:231
chr2	29226559	rs12619829	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr2	29240005	rs13409097	T	C	1770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-3.463;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:305,114:0.27:419
chr2	29244985	rs143610008	T	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	29274720	rs895591	A	G	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:526,237:0.31:763
chr2	29287708	rs10182566	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	29287926	rs139768554	C	CGCT	5770.73	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:104,145:0.58:249
chr2	29294239	rs144569618	G	A	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:200,116:0.37:316
chr2	29355303	rs4666167	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	29356669	rs3100232	A	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:52,96:0.65:148
chr2	29356728	rs3768674	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr2	29366830	rs3213947	A	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:125,51:0.29:176
chr2	29366875	rs3217572	C	CACAG	3246.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	29383326	.	C	T	1023.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:93,50:0.35:143
chr2	29383374	rs2305450	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr2	29386646	rs10200936	G	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	29416025	rs10625834	C	CATTG	64.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr2	29416366	rs1881421	G	C	9238.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	29416481	rs1881420	T	C	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.817;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:273,97:0.26:370
chr2	29416572	rs1670283	T	C	11168.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr2	29416615	rs56132472	G	A	5859.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:103,262:0.72:365
chr2	29416794	rs17007646	G	A	2993.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:67,142:0.68:209
chr2	29420315	rs3738870	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=-1.460;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr2	29430942	rs3832036	GTC	G	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:67,24:0.26:91
chr2	29444076	rs1534545	G	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr2	29444095	rs1569156	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	29445458	rs3795850	G	T	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.194;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:84,32:0.28:116
chr2	29446128	rs12989497	A	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,65:0.73:89
chr2	29446184	rs2276550	C	G	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.219;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:155,63:0.29:218
chr2	29449819	rs2293563	C	T	2645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.419;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:69,123:0.64:192
chr2	29455267	rs2256740	A	G	9164.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	29498210	rs4589708	A	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	29519622	rs2272409	C	T	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	29525341	rs11127213	A	G	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=2.628;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	29525345	rs11127214	T	C	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=2.564;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	29541104	rs2276549	C	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	29543663	rs2293564	T	C	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	29551161	rs62130643	G	A	3789.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:57,166:0.74:223
chr2	29917940	rs2256376	C	G	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr2	29940529	rs2246745	A	T	3967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=0.091;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:105,188:0.64:293
chr2	30143499	rs4358080	G	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	30381505	rs1137288	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr2	30480196	rs6548005	C	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr2	30682360	rs829574	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,30:0.39:76
chr2	30775299	rs12053428	G	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	30791152	rs6749074	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=1.274;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	30828792	rs2248777	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr2	30955528	rs2276567	C	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr2	30959262	rs509380	G	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:36,102:0.74:138
chr2	30961400	rs35032002	AG	A	1445.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr2	30968760	rs57880021	ATTTT	A	695.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=0.049;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	30973802	rs140906881	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	30976058	rs2926304	C	T	3880.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:86,180:0.68:266
chr2	30977073	rs485100	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:66,149:0.69:215
chr2	30980940	rs508405	C	T	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:28,76:0.73:104
chr2	30986853	rs17396613	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	30986989	rs579016	G	T	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	31009977	rs1915125	G	C	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	31188957	rs889896	C	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	31401290	rs4952052	A	C	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	31410708	rs1822496	C	T	10156.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr2	31414807	rs1562022	C	G	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	31415967	rs7591444	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr2	31416213	rs11124248	T	C	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.236;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:78,47:0.38:125
chr2	31416305	rs11124249	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.845;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-1.235;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	31416309	rs11124250	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-1.123;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	31416317	rs12619774	C	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=-0.948;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	31423365	rs111554796	G	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=2.132;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr2	31424696	rs75525195	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr2	31424885	rs11692905	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:179,90:0.33:269
chr2	31457817	rs2236170	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	31467351	rs2295473	T	A	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	31483890	rs13028669	T	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	31484334	rs654650	G	A	3735.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	31488965	rs619002	C	T	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	31489627	rs67643147	TAC	T	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.277;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	31567743	rs566224	T	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	31569471	rs7599175	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	31570376	rs1366813	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	31570626	rs4952083	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	31570631	rs4952084	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	31571241	rs13415401	G	C	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	31571786	rs1884725	A	G	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	31572398	rs1429374	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	31572482	rs11408029	T	TG	4568.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	31587235	rs1018505	G	A	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	31588218	rs11899710	G	A	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:49,87:0.64:136
chr2	31588288	rs2365842	T	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:209,120:0.36:329
chr2	31589847	rs2295475	G	A	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=-1.501;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:233,130:0.36:363
chr2	31590785	rs761926	C	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.728;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:142,46:0.24:188
chr2	31596955	rs4952086	G	A	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.11;ReadPosRankSum=0.166;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,23:0.92:25
chr2	31596963	rs4952087	T	C	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=36.34;ReadPosRankSum=0.806;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr2	31600146	rs10187719	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	31609448	rs477626	A	C	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	31611367	rs206847	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	31621598	rs10175754	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	31626045	rs1346644	G	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.365;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:98,51:0.34:149
chr2	31628705	rs1366814	T	G	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:231,151:0.40:382
chr2	31751174	.	C	CATATATATATATATATAT	915.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr2	31751175	rs192604242	G	A	1093.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.952;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.32;ReadPosRankSum=-0.401;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	31751178	rs370989010	A	T	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=-0.634;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr2	31756631	rs147277527	G	GGGGCATTTAATTCCAAAAAATGAAGGGAA	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	31805619	rs619857	T	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	31805675	rs522638	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	31805706	rs523349	G	C	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	31805880	rs142200057	A	AG	10349.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr2	31806031	rs632148	C	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	32146160	rs56156729	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	32148619	rs17011697	G	T	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:45,106:0.70:151
chr2	32148636	rs34645083	T	A	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:55,171:0.76:226
chr2	32188138	rs67493880	C	T	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:132,218:0.62:350
chr2	32248479	rs3832076	C	CCATT	1255.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr2	32264285	rs141121792	TC	T	1385.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr2	32264288	rs62142092	C	T	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr2	32312700	rs7561519	T	C	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr2	32312716	rs202142071	C	CTATT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.460;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	32324072	rs7566162	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	32362079	rs10627985	G	GTATA	2203.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr2	32369901	rs2365556	T	C	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	32372399	rs151273719	ATG	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.98;ReadPosRankSum=-1.030;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	32400532	rs28713298	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=-1.191;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr2	32418808	rs212751	T	A	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	32422366	rs151324916	G	GT	309.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr2	32434701	rs212685	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	32460348	rs212714	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr2	32461493	rs55638726	T	TC	225.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	32466029	rs212721	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr2	32475109	rs455060	G	A	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:315,146:0.32:461
chr2	32476390	rs408813	T	G	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:129,66:0.34:195
chr2	32481793	rs11295492	AT	A	1089.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:72,32:0.31:104
chr2	32481795	rs59966205	T	A	1098.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:72,32:0.31:104
chr2	32620722	rs3731581	A	T	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:75,170:0.69:245
chr2	32639736	.	A	AAAAT	738.73	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr2	32667058	rs55734616	C	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=3.215;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	32667061	rs60955793	T	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	32667182	rs60197615	G	C	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr2	32688601	rs762019	A	C	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	32706579	rs9646977	T	A	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	32712875	rs2366891	A	C	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	32713706	rs2366894	A	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	32724590	rs145668508	GTC	G	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.701;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:150,20:0.12:170
chr2	32733343	.	CTTTTTTTTTTT	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=6.362;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.66;ReadPosRankSum=1.921;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	32735881	rs3731579	A	G	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	32740138	rs34757266	T	C	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.033;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:324,119:0.27:443
chr2	32749880	rs2710609	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	32749890	rs2710610	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	32749893	rs2710611	A	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	32749903	rs2710612	T	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.42;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	32757201	.	C	CGTGTGT,CGTGTGTGT	321.75	.	AC=2,0;AF=1.00,0.00;AN=2;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:6
chr2	32772916	.	G	A	1270.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr2	32800422	rs35286811	C	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr2	32822729	rs2583713	A	G	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr2	32822957	rs2710625	G	A	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-2.371;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:130,52:0.29:182
chr2	32855615	rs2710623	A	G	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	32860415	rs11124286	C	T	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	32865308	rs139851663	A	G	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,88:0.62:141
chr2	32875084	rs34549288	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr2	32927863	rs2273659	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:157,68:0.30:225
chr2	32928119	rs7586406	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr2	32958838	rs3830967	CTT	C	1399.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr2	32959024	rs1551177	T	C	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:100,257:0.72:357
chr2	32959075	rs3818266	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:122,45:0.27:167
chr2	32961745	rs10200333	T	A	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr2	32983299	rs71407470	TA	T	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	33004907	rs34397390	G	GTCC	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	33005238	rs6729463	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	33007710	rs138656306	C	T	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-0.667;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	33036324	rs3731578	G	A	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	33045867	rs138344718	G	GT	1186.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,66:0.43:154
chr2	33172307	rs112060237	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.97;ReadPosRankSum=0.566;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	33174072	rs150654	A	C	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr2	33392911	rs6728094	G	A	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	33407186	rs6759943	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	33407285	rs2367619	G	A	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	33412077	rs1065324	G	A	4216.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	33413640	rs6712473	G	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	33413949	rs4542826	G	A	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	33414009	rs3922572	T	A	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr2	33442549	rs2290449	G	A	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	33447202	rs2290448	C	T	10268.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr2	33477964	rs3731575	C	T	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr2	33488419	rs12468099	G	A	3292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=1.418;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:99,158:0.61:257
chr2	33500848	rs3816479	A	G	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:117,206:0.64:323
chr2	33525382	rs935996	A	C	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	33525407	rs2123769	A	G	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-0.603;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr2	33540138	rs2276591	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	33540172	rs3216704	A	AT	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr2	33540248	rs1058840	G	A	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	33568191	rs5024712	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=3.214;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr2	33585796	rs4422143	T	C	10362.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr2	33586464	rs11442294	C	CT	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=0.000;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:20,45:0.69:65
chr2	33614187	rs642472	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr2	33622448	rs2367734	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	33623306	rs2034693	C	T	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr2	33623387	rs624060	AT	GC	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	33623734	rs622716	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	33643739	.	T	TG	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.12;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.467;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr2	33744958	rs7597095	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	33745208	rs2305576	T	C	3353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=-1.810;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:94,161:0.63:255
chr2	33752129	rs11292992	GC	G	260.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:48,13:0.21:61
chr2	33764286	rs7592762	T	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr2	33784135	rs12470399	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=9.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.753;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:74,37:0.33:111
chr2	33784801	rs12478742	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr2	33787976	rs10572554	CCTAA	C	1692.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	33952022	rs4670913	C	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,28:0.78:36
chr2	33952055	rs2290101	C	G	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr2	33952413	rs4477896	T	C	6991.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:145,300:0.67:445
chr2	33952456	rs2367810	C	G	13094.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr2	35696612	rs4670472	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	36739553	rs848526	T	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	36740643	rs2293254	C	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr2	36756288	rs711247	T	C	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	36775315	rs2270333	C	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr2	36775410	rs11318146	CT	C	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.424;QD=6.13;ReadPosRankSum=-1.308;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:36,52:0.59:88
chr2	36779144	rs10180760	T	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr2	36781401	rs1533946	T	C	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=-0.751;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:29,63:0.68:92
chr2	36782656	rs10178965	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr2	36783127	rs10194100	T	C	2460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=0.538;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:49,113:0.70:162
chr2	36783215	rs10181664	C	T	2846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.122;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:78,133:0.63:211
chr2	36805676	rs2075226	A	G	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,105:0.65:161
chr2	36806021	rs2072534	G	A	3834.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:100,169:0.63:269
chr2	36806051	rs2072533	A	G	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:45,101:0.69:146
chr2	36808350	rs848638	C	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:43,74:0.63:117
chr2	36808732	rs848637	T	G	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr2	36810473	rs11691767	G	T	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:66,117:0.64:183
chr2	36810586	rs14291	T	C	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr2	36824956	rs5830430	G	GC	1680.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	36825137	rs1544655	G	A	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr2	36825170	rs2287104	T	C	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	36825330	rs11441122	C	CG	2029.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	36825359	.	G	GCCCCGC	724.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	36943338	rs4670597	C	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	36943419	rs4670598	T	C	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr2	36994439	rs11124542	A	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:76,39:0.34:115
chr2	37000797	rs3770784	C	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr2	37001570	rs974964	C	T	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	37010574	rs3821147	G	A	4396.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:98,200:0.67:298
chr2	37076498	rs62132520	A	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr2	37076594	rs62132521	T	C	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:176,101:0.36:277
chr2	37077015	rs723674	C	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	37078095	rs10668550	A	AT	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=1.451;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	37094945	rs2540923	A	G	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	37095139	rs6752845	G	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	37096970	rs2160379	C	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	37111045	rs2691106	T	A	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	37113791	.	G	GA	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=1.549;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr2	37129618	rs148671880	A	ATAAT	1437.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.93;SOR=6.994;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	37193647	.	AGCGGAGGCAACAGCG	A	835.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr2	37230728	rs1007823	T	C	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:189,86:0.31:275
chr2	37234519	rs2013223	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	37241050	rs17020125	G	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:207,81:0.28:288
chr2	37248015	rs17020136	T	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr2	37255015	rs2540998	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:32,26:0.45:58
chr2	37255806	rs17020143	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:69,35:0.34:104
chr2	37260027	rs5830450	G	GT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.447;QD=2.79;ReadPosRankSum=3.043;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	37265193	rs139662639	A	C	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.15;ReadPosRankSum=0.105;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:88,62:0.41:150
chr2	37276993	.	TA	T	92.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.744;QD=4.01;ReadPosRankSum=0.789;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	37292890	rs11903252	T	G	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr2	37297329	rs4327218	C	G	3821.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:94,181:0.66:275
chr2	37299145	rs12621276	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr2	37302556	rs34545380	GA	G	2421.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=21.82;SOR=1.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	37306343	rs6743906	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	37316717	.	T	TA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=1.055;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr2	37317869	rs4670654	C	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	37319211	rs55823009	A	G	1358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=-0.397;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:45,63:0.58:108
chr2	37347062	rs4648217	T	TTA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=-0.106;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	37365251	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=1.335;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	37373982	rs2307475	A	AT	5095.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	37402270	rs11569755	C	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr2	37402373	rs11569758	A	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.499;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.145;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:38,6:0.14:44
chr2	37406644	rs10182091	A	G	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:143,187:0.57:330
chr2	37406680	rs10205833	C	G	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:106,149:0.58:255
chr2	37406761	rs4459710	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr2	37406807	rs2111630	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	37410537	rs6544061	C	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr2	37414431	rs6724820	A	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.197;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr2	37415496	rs11124566	G	C	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	37428743	rs2540973	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.80;ReadPosRankSum=-1.501;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	37438993	rs1137437	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:145,113:0.44:258
chr2	37447465	rs11124567	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=13.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.628;SOR=3.908;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	37447473	rs57004489	T	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.988;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.906;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	37447475	rs74177066	T	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=7.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=2.326;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	37455232	rs35414551	C	A	4656.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:145,211:0.59:356
chr2	37456032	rs2098386	C	T	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	37458711	rs3213745	G	A	3672.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:321,194:0.38:515
chr2	37480249	rs1056021	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	37483771	rs373754065	ATTTT	A	165.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.42;ReadPosRankSum=1.383;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	37487620	rs139549993	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr2	37499289	rs11124574	T	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	37518045	rs10177176	G	C	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=-3.205;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:297,154:0.34:451
chr2	37586681	rs2302651	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	38177525	rs11687301	A	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:103,50:0.33:153
chr2	38178362	rs2197561	T	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:45,77:0.63:122
chr2	38178406	rs4670799	A	G	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:125,82:0.40:207
chr2	38179134	rs4670800	G	A	21218.77	.	AC=2;AF=1.00;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	1/1:0,793:1.00:793
chr2	38179414	rs72332368	CTG	C	2194.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:106,62:0.37:168
chr2	38202502	rs2044447	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	38208233	rs1446297	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	38244818	rs11901988	A	C	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.818;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.09;ReadPosRankSum=-2.565;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr2	38244824	rs11891536	G	A	1207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.80;ReadPosRankSum=-1.960;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr2	38298150	rs1056837	A	G	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:128,55:0.30:183
chr2	38298203	rs1056836	C	G	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.095;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:145,59:0.29:204
chr2	38302177	rs1056827	C	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:117,87:0.43:204
chr2	38302390	rs10012	G	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.184;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:74,33:0.31:107
chr2	38302544	rs2617266	G	A	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.123;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.486;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr2	38526333	.	A	AT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-2.239;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr2	38809162	rs2253519	C	T	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr2	38813167	.	C	CT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=3.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=4.381;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr2	38827161	rs115373059	A	G	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:203,93:0.31:296
chr2	38925610	rs12465156	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr2	38925655	.	T	TA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.23;ReadPosRankSum=-0.718;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	38956947	rs2272445	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,120:0.61:197
chr2	38973131	.	CA	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=6.338;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.919;QD=0.80;ReadPosRankSum=0.016;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:90,22:0.20:112
chr2	38975332	.	G	GT	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.928;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr2	38977371	rs3112183	C	T	7467.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	38977402	rs3134630	T	C	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	39006603	rs3112201	T	G	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	39025043	rs34207268	G	GA	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.709;QD=10.37;ReadPosRankSum=0.235;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr2	39025555	rs1530853	G	A	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	39025632	rs1530852	A	G	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	39030074	rs13029406	C	T	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	39042639	rs3112138	G	A	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	39045885	rs10176932	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	39050019	rs3112146	G	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	39050061	rs34582261	AT	A	2505.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=60.59;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	39050141	rs3770681	A	C	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,233:1.00:234
chr2	39065729	rs17494315	C	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	39075356	rs11124651	A	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	39082344	rs7598922	T	C	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	39083645	rs372510406	CT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.849;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr2	39090696	rs3099999	T	C	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	39117117	rs7565111	G	A	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	39162785	rs5830547	CT	C	799.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr2	39181774	rs10706405	CT	C	228.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.793;QD=8.17;ReadPosRankSum=-1.096;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,22:0.79:28
chr2	39185048	rs422854	C	T	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	39187190	rs6755527	T	C	7142.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr2	39187519	rs958412	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	39198966	rs2305516	A	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:1,75:0.99:76
chr2	39201073	rs141703594	CTA	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.683;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.546;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:40,13:0.25:53
chr2	39214821	rs2290445	A	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	39224351	rs1454223	G	T	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	39224615	rs5830551	G	GT	1618.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	39233500	rs7577088	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	39251375	rs10634554	T	TCAC	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	39262068	rs10153761	C	T	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	39281730	rs997344	G	C	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	39406572	rs7566123	C	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	39411863	rs141702509	A	ATG	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	39440727	rs10196407	G	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr2	39452861	rs11124663	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	39479122	rs3770678	G	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	39494197	rs2302749	C	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr2	39494469	rs10865149	C	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	39499614	rs17023530	T	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr2	39507417	rs3755176	T	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:31,59:0.66:90
chr2	39514136	rs3755172	T	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chr2	39514204	rs3755171	G	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	39520279	rs143585292	C	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.343;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:17,32:0.65:49
chr2	39526842	rs2111382	A	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	39542658	rs5830562	AT	A	159.84	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	39553271	rs3815594	A	G	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	39558928	rs6760382	G	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	39564620	rs1125839	C	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	39570427	rs3732053	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	39583446	rs8545	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	39664010	rs113021812	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:140,88:0.39:228
chr2	39944055	rs2540229	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	39982898	rs10688564	G	GAGTAT	475.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	39993167	rs4670959	T	C	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	40006430	rs12620957	A	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	40006442	rs35761077	C	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	40006488	rs145441522	A	AGGGAGAGGGAGAGGGAGAGG	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.19;QD=48.46;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	40392313	rs434725	G	C	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr2	40403104	rs106706	A	G	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.283;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:54,39:0.42:93
chr2	40404839	rs433572	C	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:87,53:0.38:140
chr2	40655563	rs3838567	CCACA	C,CCA	2041.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.431;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.87;MQRankSum=0.000;QD=26.18;ReadPosRankSum=0.015;SOR=0.190;set=HC	GT:AD:AF:DP	1/2:4,24,50:0.31,0.64:78
chr2	42181051	rs3038317	GCA	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.198;SOR=2.348;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr2	42275726	rs11891679	C	G	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr2	42275819	rs11897440	T	C	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:58,130:0.69:188
chr2	42280300	rs34482969	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	42280358	rs35771566	C	T	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:56,85:0.60:141
chr2	42282632	rs13401037	A	T	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,80:0.67:120
chr2	42396722	rs7233	A	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	42491951	rs6735571	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr2	42510018	rs6736913	A	G	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	42515388	rs10202624	A	G	928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=1.744;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:31,47:0.60:78
chr2	42515501	rs10179237	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr2	42543020	rs200655876	C	CA	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr2	42544821	rs7558501	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	42560975	rs7572231	A	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,67:0.58:116
chr2	42719847	rs113015907	T	TG	10004.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	42719860	rs112592817	G	GC	11406.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	42795954	rs78106475	T	C	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	42836516	rs6720277	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	42925079	rs148782944	TTTC	T	82.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	42931217	rs2304658	A	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr2	42935961	rs4953577	C	T	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,51:0.38:135
chr2	42935979	rs4953578	C	T	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:96,54:0.36:150
chr2	42950185	rs62144300	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:267,144:0.35:411
chr2	42989994	rs2278585	G	T	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:37,88:0.70:125
chr2	42990010	rs12617777	C	A	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:58,127:0.69:185
chr2	42990101	rs2278586	G	C	8106.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:220,373:0.63:593
chr2	42990336	rs1992286	T	G	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	42990522	rs12712859	C	T	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:142,264:0.65:406
chr2	42996709	rs35746707	ATGTGTGTGTG	A,ATG	1945.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=64;set=Intersection	GT:AF:DP	1/2:0.78,0.17:60
chr2	42996759	rs34567167	AAGAG	A	4075.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	42997614	rs2241850	G	A	2925.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:62,128:0.67:190
chr2	43011169	rs4953660	G	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr2	43015612	rs3816181	G	T	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	43015704	rs3816182	T	A	5958.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:138,263:0.66:401
chr2	43015719	rs3816183	T	C	9576.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr2	43015757	rs3816184	G	A	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	43015814	rs62143190	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,41:0.34:119
chr2	43015902	rs3816185	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	43019730	rs2304656	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	43625078	rs7605661	T	C	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	43625184	rs33979934	T	A	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	43657510	rs35340152	T	A	970.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	43732958	rs3764769	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr2	43754992	rs1491508	C	T	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=-0.445;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:58,41:0.41:99
chr2	43768545	rs72790940	T	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr2	43787576	rs4337518	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	43793725	rs1158411	G	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr2	43793963	rs34512555	T	TAA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.945;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	43797619	rs17031056	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:72,36:0.33:108
chr2	43797710	rs11904510	G	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=2.208;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	43798792	rs11884742	G	A	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:77,37:0.32:114
chr2	43799070	rs3752355	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	43800174	rs11898207	A	G	5002.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr2	43801712	rs11899823	A	G	12990.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:2,484:1.00:486
chr2	43802261	rs970175	C	A	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	43804229	rs13021894	T	C	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr2	43805608	rs6759861	C	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.107;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-1.146;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr2	43805739	rs61754256	C	T	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:59,91:0.61:150
chr2	43817783	.	C	CA	46.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-1.668;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	43817950	rs35899859	CT	C	739.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-0.086;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:70,47:0.40:117
chr2	43819139	rs17031095	A	G	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr2	43871983	rs12105773	T	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	43902511	rs755862	G	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	43902757	rs143787127	C	G	4941.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:104,227:0.69:331
chr2	43903066	rs3828297	A	G	10503.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr2	43903354	rs4952675	T	C	12296.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr2	43903483	rs4952995	T	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	43905876	rs113794228	A	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.413;MLEAC=1;MLEAF=0.500;MQ=62.23;MQRankSum=-1.815;QD=2.51;ReadPosRankSum=1.267;SOR=1.421;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr2	43905898	rs142175341	G	GAGGTGGAGGTGC	1160.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr2	43919934	rs17031284	G	C	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.46;ReadPosRankSum=-0.674;SOR=2.800;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	43921489	rs12616572	A	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	43926943	rs7606783	T	A	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr2	43927459	rs12623703	C	G	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:536,242:0.31:778
chr2	43931055	.	CTTTTTTT	C	458.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=7.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.94;ReadPosRankSum=0.958;SOR=1.649;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	43931176	rs4953002	T	C	12419.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr2	43931321	rs4953003	G	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	43947944	rs17031344	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	43953664	rs7574334	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	43965700	rs60748869	G	GT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-0.046;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr2	43968024	rs12468048	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr2	43968167	rs2278358	G	A	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:233,111:0.32:344
chr2	43968316	rs12469045	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr2	43968331	rs58382159	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr2	43971292	rs12151633	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	43973099	rs17031368	A	G	3072.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:99,145:0.59:244
chr2	43985940	rs7570252	C	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	43991310	rs10205936	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	43991357	rs7565517	A	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	43992529	rs12478683	C	G	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:78,166:0.68:244
chr2	44001139	rs17031488	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,59:0.74:80
chr2	44001185	rs75684735	C	T	2647.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:51,112:0.69:163
chr2	44001216	rs114189357	C	T	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:63,172:0.73:235
chr2	44004010	rs2288709	T	C	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	44004099	rs17031494	T	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	44010620	rs3815995	G	A	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	44021826	rs9309107	T	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	44022970	rs1025447	T	C	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,63:0.70:90
chr2	44028013	rs11556157	A	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	44032189	rs10177630	C	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:77,47:0.38:124
chr2	44036800	rs4952683	A	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=0.788;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	44036913	rs8302	T	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.161;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	44036922	rs10186552	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	44040401	rs6720173	G	C	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:142,79:0.36:221
chr2	44049872	rs4073237	C	T	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:86,155:0.64:241
chr2	44066174	rs3806471	T	G	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr2	44071625	rs4148209	C	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:202,105:0.34:307
chr2	44071639	rs4148210	C	T	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:220,117:0.35:337
chr2	44071743	rs4148211	A	G	2157.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:235,125:0.35:360
chr2	44071833	rs4148212	A	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr2	44079004	rs4148214	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:154,83:0.35:237
chr2	44099433	rs4148217	C	A	8528.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:218,389:0.64:607
chr2	44099582	rs4148218	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr2	44101214	rs10709506	CA	C	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	44101394	rs4953027	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	44101430	rs4952689	T	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr2	44101538	rs28517482	C	T	2667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.324;QD=13.21;ReadPosRankSum=0.640;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:78,124:0.61:202
chr2	44101649	rs10667526	G	GC	2999.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	44101711	rs13405698	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	44102235	rs4148220	T	C	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr2	44102491	rs4148221	C	T	4053.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:104,177:0.63:281
chr2	44104925	rs6544718	T	C	9292.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr2	44116836	rs2955280	C	T	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:168,68:0.29:236
chr2	44123672	rs3839036	TC	T	891.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr2	44123759	rs3795859	G	A	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:243,103:0.30:346
chr2	44145374	rs7568481	G	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:138,61:0.31:199
chr2	44152180	rs4952694	G	A	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:205,95:0.32:300
chr2	44172444	rs28394191	A	C	1876.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:182,105:0.37:287
chr2	44173422	rs7594526	T	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr2	44187829	rs10190161	A	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr2	44201376	rs4953042	T	C	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:340,178:0.34:518
chr2	44209477	rs6741066	C	T	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:93,81:0.47:174
chr2	44445604	.	G	GT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.073;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.854;QD=1.01;ReadPosRankSum=-0.975;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr2	44471313	.	G	GA	37	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=13;HapScore=2;MGOF=0;MMLQ=27;MQ=60.54;NF=4;NR=0;PP=37;QD=11.5;SC=AATCCTGCAAGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=15;TCF=10;TCR=5;TR=4;WE=44471321;WS=44471303;set=Platypus	GT:AD:AF:DP	1/0:11,4:0.27:15
chr2	44502788	rs3738985	A	C	1913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.110;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:268,116:0.30:384
chr2	44508835	rs11124986	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	44512971	rs3768919	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr2	44528267	rs61179824	GT	G	14369.73	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:199,451:0.69:650
chr2	44531484	rs3738984	C	T	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:84,43:0.34:127
chr2	44545234	.	GTTT	G,GTT	3506.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.011;QD=21.51;ReadPosRankSum=-0.556;SOR=0.798;set=HC	GT:AD:AF:DP	1/2:17,89,57:0.55,0.35:163
chr2	44545298	rs72802996	C	T	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr2	44547574	rs698761	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:178,91:0.34:269
chr2	44547909	rs8886	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr2	44548414	rs371223439	AT	A	692.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr2	44548613	rs2241871	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr2	44550671	rs12474294	A	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	44556298	rs2033951	T	C	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	44565447	rs2289463	A	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	44569474	rs2304769	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr2	44569700	rs61004197	AAAT	A	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-0.701;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:62,27:0.30:89
chr2	44569739	rs11421998	T	TA	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.362;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr2	44570776	rs17580226	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	44570804	rs12053381	C	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr2	44573624	rs698763	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	44589146	rs150365075	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	44617324	rs1085486	T	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr2	44858687	rs10191477	T	C	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=1.143;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:85,44:0.34:129
chr2	44942331	.	C	CA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.788;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr2	45171842	rs338074	A	G	22254.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:2,864:1.00:866
chr2	45647043	rs3213788	C	G	2235.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:204,112:0.35:316
chr2	45715556	rs67396287	G	GA	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.095;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.001;QD=7.70;ReadPosRankSum=0.477;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:28,39:0.58:67
chr2	45773816	rs2276657	C	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr2	45774050	rs6708810	G	A	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-1.409;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:138,71:0.34:209
chr2	45774548	rs1865685	A	C	5225.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	45780962	rs3816107	C	G	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr2	45806963	rs374392017	TA	T	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.949;QD=3.09;ReadPosRankSum=-0.618;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:72,42:0.37:114
chr2	45826526	rs35501868	CT	C	3488.73	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:174,111:0.39:285
chr2	45829286	rs12998864	A	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr2	45879610	rs637909	A	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	46070269	rs3214783	T	TC	506.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	46205925	rs2249633	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	46207567	rs2249505	C	T	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	46228391	rs374169133	CAT	C	170.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:53,16:0.23:69
chr2	46378419	.	TAC	T,TACAC	920.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.298;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=2.753;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.799;QD=12.11;ReadPosRankSum=0.199;SOR=1.197;set=HC	GT:AD:AF:DP	1/2:15,39,22:0.51,0.29:76
chr2	46602722	rs7567582	T	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	46603671	rs7557402	C	G	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	46605659	rs7571218	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	46605954	rs7598371	G	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	46608542	rs13006131	C	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	46739157	rs3814045	A	G	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:71,130:0.65:201
chr2	46771134	rs6714484	G	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	46799852	rs1451153	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr2	46819815	rs2305350	A	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	46842410	rs2242033	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	46844579	rs113439250	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	46845849	rs2122715	A	G	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=0.672;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr2	46851182	rs13430706	T	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-0.041;SOR=1.546;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	46986416	rs6738426	A	G	4362.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:100,208:0.68:308
chr2	46986716	rs41489952	C	G	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:262,130:0.33:392
chr2	46987300	rs3768720	T	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr2	47044277	rs2289930	C	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	47044381	rs11682999	T	A	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:74,113:0.60:187
chr2	47045267	rs2289931	G	A	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	47045309	rs2289933	C	T	6177.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:87,153:0.64:240
chr2	47045321	rs17773492	A	G	6869.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:101,189:0.65:290
chr2	47049170	rs76660299	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:177,82:0.32:259
chr2	47049409	rs2278715	C	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	47049453	rs1053952	A	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	47081092	rs11687883	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	47083028	rs112990716	ATATG	A	71.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.680;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr2	47083030	rs3835756	ATG	A	901.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr2	47083042	rs3768718	A	T	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-0.615;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:16,45:0.74:61
chr2	47083044	rs1079	A	T	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.03;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	47083252	rs11691225	G	T	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	47085398	rs2278711	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	47132945	rs7600882	G	T	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr2	47177787	rs2033533	G	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr2	47185438	rs4952856	G	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr2	47201797	rs6745836	A	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	47201922	rs116661870	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	47201991	rs67758600	CT	C	738.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr2	47202314	rs2304286	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.674;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr2	47251469	rs2304290	G	C	5899.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:125,263:0.68:388
chr2	47251510	rs11885389	G	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:260,128:0.33:388
chr2	47251634	rs6713052	T	C	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	47251698	rs13400315	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr2	47256297	rs2304289	C	T	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr2	47256618	rs7575628	A	G	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:37,92:0.71:129
chr2	47273668	rs12712986	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr2	47277043	rs2304287	C	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr2	47277207	rs3816066	CA	AG	17254.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr2	47278823	rs17482356	C	T	191.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr2	47288179	rs147127550	C	T	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=2.042;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr2	47314052	rs1474394	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	47348347	rs1880583	C	T	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr2	47357458	rs58184321	A	G	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr2	47380203	rs815809	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	47382214	rs815806	C	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	47382300	rs815805	G	A	7763.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	47382342	rs815804	G	T	9210.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr2	47601106	rs1126497	T	C	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.981;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:168,86:0.34:254
chr2	47605097	rs28609437	C	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.711;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr2	47612224	rs7584256	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr2	47613870	rs1421	T	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-0.371;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	47630213	rs2303425	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	47630550	rs2303426	C	G	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.051;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr2	47635523	.	C	CT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.501;QD=2.33;ReadPosRankSum=1.238;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr2	47656801	rs2347794	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr2	47672569	rs1981929	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	47690404	rs3771278	T	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.909;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr2	47690408	rs3771279	A	G	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=-0.292;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	47690411	rs3771280	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-0.292;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	47693788	rs12998837	A	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.112;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr2	47698308	rs3764959	A	G	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	47739551	rs2303424	A	G	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:59,37:0.39:96
chr2	47748292	rs2278139	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:138,70:0.34:208
chr2	48018030	rs1800931	A	G	351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.392;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:109,29:0.21:138
chr2	48022900	rs3136316	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.137;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr2	48030458	rs2072447	G	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,21:0.34:62
chr2	48030838	rs2020911	A	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:109,44:0.29:153
chr2	48032740	rs267608104	A	AT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.507;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr2	48032937	rs3136359	T	C	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.087;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.23;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	48033551	rs3136367	C	G	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:226,110:0.33:336
chr2	48033890	rs267608138	C	CT	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.414;QD=2.14;ReadPosRankSum=0.291;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:110,50:0.31:160
chr2	48040904	rs373765859	G	GA	6098.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr2	48046012	rs374445177	TA	T	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=4.334;QD=1.50;ReadPosRankSum=-1.060;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:148,50:0.25:198
chr2	48059471	rs142115222	AAAAT	A	2493.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr2	48586409	rs137947879	ATTTAGTT	A	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.936;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.653;QD=6.48;ReadPosRankSum=1.408;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr2	48602252	rs17855177	C	T	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:229,132:0.37:361
chr2	48668290	rs78538011	C	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr2	48681997	rs77272589	G	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr2	48713729	rs72822226	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr2	48722755	rs4443044	T	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr2	48725610	rs3811519	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	48734576	rs6716341	G	A	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	48738687	rs4528813	G	C	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:30,69:0.70:99
chr2	48756682	rs34461314	C	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.332;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:95,34:0.26:129
chr2	48807796	rs17039250	A	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:217,102:0.32:319
chr2	48807976	rs3828340	T	C	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.165;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:333,136:0.29:469
chr2	48808152	rs940389	G	C	2927.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:256,155:0.38:411
chr2	48808594	rs3749142	C	T	2331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.442;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.114;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:368,141:0.28:509
chr2	48808882	rs3749144	T	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr2	48808898	rs3749145	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:68,45:0.40:113
chr2	48809593	rs3792234	G	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:183,99:0.35:282
chr2	48809756	rs3792235	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr2	48822381	rs2140551	G	A	2852.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:67,130:0.66:197
chr2	48844968	rs2293269	C	G	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:73,139:0.66:212
chr2	48848295	rs13035544	C	T	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=2.627;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:127,44:0.26:171
chr2	48869731	rs142789844	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=1.678;QD=11.91;ReadPosRankSum=0.942;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr2	48898798	rs3920390	T	A	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	48906625	rs1965508	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	48915871	rs11125179	A	G	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:102,213:0.68:315
chr2	48921375	rs2293275	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr2	48925691	rs11675952	C	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr2	48925746	rs6755901	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr2	48925986	rs70946824	AT	A	708.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.931;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.424;QD=14.77;ReadPosRankSum=0.271;SOR=0.352;set=HC	GT:AD:AF:DP	1/1:5,43:0.90:48
chr2	48941072	rs111834744	CA	C	2489.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,71:0.70:101
chr2	48948802	rs4490239	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:43,21:0.33:64
chr2	48948856	rs4637173	A	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=1.031;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:124,50:0.29:174
chr2	48952701	rs6545063	C	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	49189921	rs6166	C	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:58,110:0.65:168
chr2	49191041	rs6165	C	T	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:32,85:0.73:117
chr2	49215977	rs2072488	G	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr2	49216284	rs2072487	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	49217916	rs2072486	T	G	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr2	49241849	rs6708637	G	A	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-1.324;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	50201110	rs9636391	A	G	4016.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	50201383	rs4971883	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr2	50280283	rs1363050	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	50280338	rs1363049	G	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	50280604	rs79970751	T	C	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:86,165:0.66:251
chr2	50434741	rs17040210	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr2	50434759	rs1715984	C	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	50574485	rs13422484	A	G	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	50692459	rs12713101	T	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr2	50692819	rs10168838	T	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	50693363	rs1520454	A	T	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	50693504	rs75315267	AAC	A	1792.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,45:0.69:65
chr2	50699305	rs2075234	T	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	50733860	rs7584062	A	G	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	50758657	rs2066948	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	50858107	rs961405	T	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	50966283	rs1546667	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	51254538	rs13426386	C	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	51254901	rs1045874	G	A	19935.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,760:1.00:760
chr2	52929596	rs6711444	C	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	52929680	rs6726779	T	C	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	52929780	rs6726935	T	G	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	52929844	rs6545299	G	A	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	53832072	rs2357490	C	T	6686.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	53956838	rs10490467	A	G	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr2	54023247	rs72502136	GT	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=2.173;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	54024626	rs2692514	C	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-0.269;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	54035374	rs2692519	A	G	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr2	54041983	rs2542571	G	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:36,91:0.72:127
chr2	54042122	.	AT	A	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.458;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr2	54042132	rs72377367	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=-0.000;DB;DP=32;ExcessHet=3.0103;FS=5.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.92;ReadPosRankSum=0.206;SOR=2.048;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	54114967	rs805399	G	A	2469.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:61,107:0.64:168
chr2	54115904	rs805400	A	G	3481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.435;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.164;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:104,164:0.61:268
chr2	54116003	rs805401	C	T	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr2	54120025	rs805408	A	T	2426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-1.294;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:52,114:0.69:166
chr2	54120204	rs805409	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	54120820	rs805412	G	A	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=1.210;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:22,38:0.63:60
chr2	54122956	rs698856	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr2	54122984	rs698857	C	T	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr2	54125258	rs805416	T	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr2	54125495	rs805417	T	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr2	54127041	rs805423	C	T	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:35,81:0.70:116
chr2	54133744	rs805316	T	C	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:56,123:0.69:179
chr2	54134090	rs74955566	G	T	362.85	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr2	54135429	rs805319	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr2	54144448	rs805325	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=0.310;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	54144532	rs805326	A	G	57.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	54152585	rs114492670	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr2	54152927	rs2302879	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr2	54155240	rs805349	A	G	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:71,102:0.59:173
chr2	54158957	rs805352	C	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,72:0.63:115
chr2	54161885	rs805357	G	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:18,62:0.78:80
chr2	54175440	rs805445	T	C	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr2	54343012	rs7573491	C	A	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	54362437	rs2357954	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	54369120	.	TTG	T	63.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,8:0.13:60
chr2	54482964	rs843704	C	T	10158.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:238,456:0.66:694
chr2	54494370	rs865816	A	G	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	54562012	rs55714450	C	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,28:0.39:72
chr2	54587378	rs2280717	C	G	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:75,98:0.57:173
chr2	54587596	rs2280718	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:102,64:0.39:166
chr2	54587647	rs146106530	C	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:59,81:0.58:140
chr2	54608832	rs78018084	C	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	54839276	rs3796014	A	G	8006.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr2	54844911	rs72618664	G	A	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	54855137	rs2971887	T	C	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	54858511	rs1052788	C	T	15363.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr2	54886347	rs1052820	G	A	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	54893237	rs3817163	C	T	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	55040426	rs2631840	A	G	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	55071101	rs72020199	TTG	T,TTGTGTGTGTG	1685.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.92;MQRankSum=0.298;QD=27.63;ReadPosRankSum=0.377;SOR=1.302;set=HC	GT:AD:AF:DP	1/2:1,27,33:0.44,0.54:61
chr2	55091029	rs2358155	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=2.687;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:108,44:0.29:152
chr2	55093784	rs17417731	T	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr2	55093842	rs1961245	G	A	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:65,105:0.62:170
chr2	55121930	rs998230	C	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.384;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr2	55137953	rs67721747	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	55138272	rs2304688	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	55144103	rs2304685	C	G	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.93;ReadPosRankSum=1.018;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:14,48:0.77:62
chr2	55180965	rs4671998	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr2	55181022	rs34371058	T	TA	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.000;QD=4.02;ReadPosRankSum=0.385;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:62,40:0.39:102
chr2	55186229	rs12623902	T	C	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr2	55186394	rs17346629	A	C	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-1.205;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr2	55187297	rs58866010	A	AG	3030.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	55189869	rs34564860	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr2	55200800	rs2255112	T	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	55201038	rs2255026	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.965;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr2	55214618	rs2580769	A	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr2	55214912	rs2580770	C	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr2	55254721	rs13002841	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	55404794	rs14026	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	55407754	rs6716066	C	T	11569.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr2	55407935	rs10183953	G	A	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	55436001	rs142601208	CTT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.72;ReadPosRankSum=0.135;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	55439963	rs2118283	C	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	55470115	rs11357	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	55471407	rs2589083	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	55473371	rs2576724	A	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	55473386	rs3833559	CAT	C	8727.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	55473681	rs2589081	A	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	55489629	rs2589093	T	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	55490745	.	CA	C	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.244;QD=2.12;ReadPosRankSum=-0.687;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr2	55490819	rs1056445	G	T	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	55518742	rs2249856	T	C	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	55522422	rs2589110	A	G	7025.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	55527108	rs1545121	G	A	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:87,154:0.64:241
chr2	55528257	rs2576699	A	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	55528514	rs2589117	A	G	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	55535828	rs13407931	T	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	55599655	rs3111411	G	A	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	55747471	rs76100373	A	G	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:72,171:0.70:243
chr2	55760940	rs4671248	G	T	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	55762957	rs3762513	C	T	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.64;ReadPosRankSum=-1.358;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	55764754	rs11280083	AATATGAATAC	A	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.291;QD=3.93;ReadPosRankSum=0.535;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:82,16:0.16:98
chr2	55765882	.	C	CT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=0.72;ReadPosRankSum=2.108;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:151,39:0.21:190
chr2	55771050	rs3816489	C	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:82,43:0.34:125
chr2	55771161	rs1045910	A	G	11130.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr2	55795557	rs56286204	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	55805440	rs2903704	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	55808578	rs75273644	G	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	55808969	rs1975486	C	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	55812061	rs4312532	A	G	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr2	55812073	rs7594279	T	G	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:99,39:0.28:138
chr2	55844445	rs782594	T	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr2	55863360	rs35916020	T	TA	179.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr2	55867938	rs34679603	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr2	55873301	rs2627776	T	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr2	55883317	rs2627765	G	T	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-0.458;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr2	55883509	.	T	TA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.900;QD=1.74;ReadPosRankSum=-0.845;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr2	55887176	rs7592219	T	C	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=9.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=2.352;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	55887325	rs146111948	C	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=0.896;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr2	55889062	rs782604	G	A	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	55894247	rs782637	T	C	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-1.299;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:80,54:0.40:134
chr2	55898929	rs2627771	A	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	55898930	rs2627772	C	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-2.886;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	55899228	rs782631	A	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	55900231	rs146633902	G	GA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.25;ReadPosRankSum=1.469;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	55900283	rs782629	A	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	55912120	rs782572	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.084;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr2	55914573	rs11386711	C	CA	142.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr2	55914621	rs809732	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	56102260	rs55673402	G	GAT	836.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr2	56149475	rs2277886	C	G	3264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.538;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:90,154:0.63:244
chr2	56216052	rs10865292	G	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	56411817	rs35587531	C	T	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	56569881	.	A	T	152.73	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	56599354	rs11694209	A	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=1.355;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	58275666	rs986512	G	A	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	58316814	rs1051061	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.496;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr2	58362161	rs11678320	G	A	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.502;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr2	58387000	rs3732136	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	58388696	rs848291	A	G	1390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.377;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:42,65:0.61:107
chr2	58390679	rs12624152	T	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:52,78:0.60:130
chr2	58425614	rs13032432	T	C	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	58431168	rs1404460	T	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr2	58431410	rs1404459	G	C	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:38,87:0.70:125
chr2	58478722	rs61746304	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr2	60614572	rs243080	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:115,58:0.34:173
chr2	60687959	rs7569946	A	G	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.688;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.169;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:298,109:0.27:407
chr2	60768978	rs2665668	G	A	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	60780421	.	GGGC	G	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.294;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.377;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:135,16:0.11:151
chr2	60780650	rs113296120	G	GGAGA	143	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	60997757	.	CT	C	45	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=14;HapScore=4;MGOF=4;MMLQ=26;MQ=60.0;NF=0;NR=4;PP=45;QD=12.5;SC=CAAGTAATCTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=18;TCF=2;TCR=16;TR=4;WE=60997778;WS=60997747;set=Platypus	GT:AD:AF:DP	0/1:14,4:0.22:18
chr2	60997770	rs10187671	T	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	61007782	rs10496089	A	G	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	61008036	rs3845814	C	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	61009909	rs10197672	C	T	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-2.163;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:38,61:0.62:99
chr2	61014952	rs4672404	A	G	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	61018788	rs11695223	C	T	699.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=2.660;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:4,30:0.88:34
chr2	61021349	rs11125855	A	G	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr2	61022377	rs139467743	TTATTATC	T	1175.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr2	61022435	rs76955417	A	T	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr2	61118739	rs10185028	A	G	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr2	61121492	rs842644	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	61128268	rs6707682	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.000;QD=19.29;ReadPosRankSum=1.170;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	61128284	rs2115592	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=0.814;QD=24.32;ReadPosRankSum=-0.348;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	61145498	.	A	AT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.078;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:136,36:0.21:172
chr2	61175312	rs12479056	T	C	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:112,223:0.67:335
chr2	61180412	rs146204296	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	61191995	rs55776317	G	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	61304002	rs1729657	A	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr2	61304377	rs10172306	A	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	61308517	rs1177295	A	G	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.558;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	61315638	rs377349663	GTA	G	42.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr2	61349446	rs1177284	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.798;SOR=2.160;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr2	61349451	rs115069423	G	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.452;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.642;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr2	61384906	rs7558954	T	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	61385248	rs1177309	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	61389609	rs17006627	G	C	3495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=-0.602;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:73,162:0.69:235
chr2	61389737	rs1729674	T	G	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr2	61412559	rs777585	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	61413723	rs1809028	A	G	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,60:0.64:94
chr2	61415492	rs14170	A	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr2	61417617	rs777591	A	G	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:46,111:0.71:157
chr2	61448776	rs2290324	A	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:100,57:0.36:157
chr2	61450454	rs2123111	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	61456611	rs145830957	C	A	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=1.967;SOR=2.816;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	61522047	rs35292974	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	61522123	rs13014347	T	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	61528299	rs11428092	T	TA	528.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,34:0.34:100
chr2	61538602	rs141750762	G	GAAAAGAGAAAGAAAAAGAAAA	2351.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.80;QD=69.17;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	61552379	rs11448157	A	AT	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.16;ReadPosRankSum=0.542;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	61552484	rs2593624	T	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.951;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr2	61570886	rs72381726	AAAGT	A	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=2.031;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:57,18:0.24:75
chr2	61575308	rs6722430	A	G	8682.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr2	61576517	rs811378	G	A	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	61605614	rs10208769	T	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:52,14:0.21:66
chr2	61622251	rs3213951	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr2	61632918	rs17483594	T	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:87,41:0.32:128
chr2	61633305	rs76092881	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr2	61647901	rs778155	A	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,37:0.37:99
chr2	61713209	rs35844473	GGAAAATC	G	778.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr2	61713218	rs60155512	T	A	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.561;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.41;ReadPosRankSum=0.711;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	61713218	.	TGT	AGG	1727	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=0;NR=15;PP=1727;QD=118.697858324;SC=AGGAAAATCTTGTGTTTGTAT;SbPval=1.0;Source=Platypus;TC=21;TCF=0;TCR=21;TR=15;WE=61713228;WS=61713199;set=Platypus	GT:AD:AF:DP	0/1:6,15:0.71:21
chr2	61713220	rs61235340	T	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.553;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.53;ReadPosRankSum=0.779;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	61722519	rs74392163	G	GA	306.79	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr2	61729258	rs2305155	A	G	2371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.28;ReadPosRankSum=2.569;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:22,59:0.73:81
chr2	61729268	rs2305156	T	C	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=5.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.07;ReadPosRankSum=0.020;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:22,66:0.75:88
chr2	61749690	rs3732171	C	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr2	61749716	rs3732170	C	T	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-2.088;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:21,66:0.76:87
chr2	61761169	rs1446532	G	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	62053878	rs11392751	G	GA	91	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	62063093	rs11299120	TA	T	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.601;QD=5.26;ReadPosRankSum=-0.395;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr2	62065851	rs17513666	C	T	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	62066927	rs4672457	A	G	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	62067433	rs17513722	T	C	11992.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr2	62073918	rs58256183	C	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	62074140	rs113296637	A	AAC	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr2	62074154	rs62149863	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	62081012	rs4270331	A	C	17576.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr2	62081217	rs1881616	A	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	62095994	rs4672463	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	62096790	rs149499966	TTCTG	T	7404.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	62104343	rs7571143	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	62104660	rs11371205	T	TA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.722;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr2	62107376	rs5831625	T	TC	2591.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	62112221	rs11429418	G	GA	3631.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:9,177:0.95:186
chr2	62112222	rs67059162	G	A	9179.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.44;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	62112246	rs57035931	C	CT	1340.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=0.077;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:12,78:0.87:90
chr2	62196080	.	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.357;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	62228180	rs55785307	C	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr2	62729653	rs6713096	A	G	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.606;QD=4.56;ReadPosRankSum=-0.733;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:180,68:0.27:248
chr2	62729674	rs4672527	T	C	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	62729747	rs11443505	G	GA	2890.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	62733189	rs17854454	C	T	4913.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:347,155:0.31:502
chr2	62733201	rs78110679	A	T	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:308,134:0.30:442
chr2	62733253	rs11676567	C	T	7486.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	62738883	rs6757222	C	T	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	62738931	rs6757448	G	C	4922.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr2	62739135	rs4405748	A	C	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	63170905	rs75746135	A	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	63176139	rs17432615	A	C	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	63380809	rs7595595	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	63540324	rs1517403	A	G	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr2	63540523	rs1517402	A	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	63605772	rs2292794	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	63609017	rs2138796	A	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	63631889	rs4671501	A	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	63631921	rs4671502	C	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	63660902	rs17617459	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:136,48:0.26:184
chr2	63666804	rs144462752	T	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr2	63719887	rs17617855	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	63720210	rs7563623	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	63798333	rs4671068	C	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	63815206	rs1109027	A	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	63816672	rs10469944	C	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	63822785	rs2305157	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	63826528	rs7606045	T	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	64069277	rs78573846	GA	G	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=3.774;QD=1.37;ReadPosRankSum=0.059;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:79,29:0.27:108
chr2	64069311	rs4671534	G	C	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	64069732	rs6546029	G	A	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	64082619	rs34900788	G	C	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	64082721	rs13028805	G	A	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	64084005	rs35253921	G	A	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	64084098	rs35552326	T	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	64085114	rs10183479	G	A	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	64117423	.	G	A	331.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	64117425	.	G	T	331.78	.	AC=2;AF=1.00;ALERT;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	64117426	.	C	A	331.78	.	AC=2;AF=1.00;ALERT;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	64117428	rs201713347	AC	A	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	64117431	.	T	TAG	232.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	64124440	rs34502946	TAA	T	689.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	64126765	rs3815616	A	G	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	64139831	.	T	TA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.577;QD=0.98;ReadPosRankSum=0.953;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr2	64139901	rs2302809	A	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	64140301	rs10207847	A	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	64195997	rs34977697	C	CA	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.555;QD=6.88;ReadPosRankSum=0.139;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:25,28:0.53:53
chr2	64331815	.	CT	C	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.300;QD=4.11;ReadPosRankSum=0.637;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:47,44:0.48:91
chr2	64682364	rs3770741	A	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:86,32:0.27:118
chr2	64794945	rs7598893	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,17:0.29:59
chr2	64796479	rs6546087	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	64796847	rs2287532	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:126,51:0.29:177
chr2	64796932	rs2287533	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr2	64799937	rs147232569	TAA	T	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.986;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr2	64819249	rs35699964	T	TA	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.044;QD=4.24;ReadPosRankSum=0.155;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr2	65200618	rs4671636	C	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	65245365	rs759458	G	A	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	65248271	rs7563131	G	A	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.028;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-1.222;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:271,111:0.29:382
chr2	65298646	rs147392467	GAAC	G	19099.73	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr2	65299298	rs2723088	C	A	36713.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,829:1.00:829
chr2	65299298	.	CTG	ATC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=380;NR=370;PP=2947;QD=20;SC=TCTCCCCCAACTGCCCACCAG;SbPval=0.54;Source=Platypus;TC=771;TCF=387;TCR=384;TR=750;WE=65299308;WS=65299288;set=Platypus	GT:AD:AF:DP	1/1:21,750:0.97:771
chr2	65299300	rs2723089	G	C	36713.77	.	AC=2;AF=1.00;AN=2;DB;DP=826;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,826:1.00:826
chr2	65325264	.	G	GA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-1.767;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr2	65473930	rs58944514	AAAATTTTC	A	3774.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	65478371	rs7574628	T	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	65481008	rs268871	A	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	65488538	rs268862	G	A	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	65495570	rs55843720	A	C	2842.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.85;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	65495570	.	AT	CC	1864	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=3;HapScore=1;MGOF=11;MMLQ=28;MQ=60.0;NF=30;NR=11;PP=1864;QD=46.767509143;SC=GGTACCAAATATTACGTTCTA;SbPval=0.55;Source=Platypus;TC=45;TCF=33;TCR=12;TR=41;WE=65495581;WS=65495560;set=Platypus	GT:AD:AF:DP	1/1:4,41:0.91:45
chr2	65495571	rs60931828	T	C	2880.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.73;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	65495573	rs72536103	A	AC	2870.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	65495887	rs268875	G	A	9770.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.76;QD=26.70;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr2	65604914	rs268120	A	G	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	66665146	rs2280334	T	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:179,80:0.31:259
chr2	66667186	rs2271856	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr2	66794834	rs1000756	G	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	66798282	rs2861108	G	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	67630980	rs3770657	G	A	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	67631831	rs61740794	G	A	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	67632125	rs3770655	C	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	67637196	rs1569	G	A	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	68270068	rs10444	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	68270258	rs10207196	C	T	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr2	68352515	rs6742154	A	C	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:128,220:0.63:348
chr2	68358341	rs62145930	T	C	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:34,115:0.77:149
chr2	68358653	rs17035004	T	C	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.918;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=9.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=1.033;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:21,42:0.67:63
chr2	68385097	rs2044693	A	G	4896.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:107,216:0.67:323
chr2	68388823	rs1137930	A	G	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:91,181:0.67:272
chr2	68389276	rs11402583	G	GA	410.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	68389481	rs3217588	CTT	C	6255.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:82,160:0.66:242
chr2	68415767	rs687	G	A	2926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.070;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:133,145:0.52:278
chr2	68444171	rs374427852	C	CACGCAG	2089.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:51,108:0.68:159
chr2	68483396	rs7593613	A	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	68511506	rs5831925	GA	G	314.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.971;QD=7.49;ReadPosRankSum=-1.961;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr2	68511584	rs735815	A	G	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr2	68592584	rs880668	T	C	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:72,129:0.64:201
chr2	68613710	rs2070171	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr2	68615654	rs2241946	T	C	4949.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:137,228:0.62:365
chr2	68620410	rs17602092	T	A	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:101,178:0.64:279
chr2	68621338	rs17530191	G	T	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:46,110:0.71:156
chr2	68621427	rs34196827	G	A	1432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=1.121;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:22,62:0.74:84
chr2	68622658	rs1373200	C	T	414.98	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr2	68622914	rs1063479	G	A	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:82,126:0.61:208
chr2	68622952	rs1050181	G	C	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:55,83:0.60:138
chr2	68772281	rs11337234	AT	A	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.817;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr2	68881938	rs57056816	C	CAA	625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.670;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.958;QD=7.92;ReadPosRankSum=-1.217;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr2	69002281	rs11685672	C	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:230,102:0.31:332
chr2	69002760	rs10445945	C	T	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,76:0.55:137
chr2	69009304	rs2271834	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:75,27:0.26:102
chr2	69043539	rs2271832	G	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	69180161	rs7561266	T	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	69201894	rs4417751	C	T	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	69297622	rs4591376	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	69298817	rs13030844	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:126,68:0.35:194
chr2	69317925	rs4854546	G	A	9385.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr2	69318129	rs4241348	T	G	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	69330284	rs4241349	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	69372333	rs151213282	C	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,28:0.74:38
chr2	69409029	rs6749826	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr2	69420596	.	TAC	T	161.73	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:78,18:0.19:96
chr2	69553375	rs201330278	GA	G	1206.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.489;QD=12.98;ReadPosRankSum=1.842;SOR=0.489;set=HC	GT:AD:AF:DP	1/1:12,81:0.87:93
chr2	69565563	rs113734896	TA	T	1349.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:190,81:0.30:271
chr2	69565842	rs11296709	TA	T	1734.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.55;ReadPosRankSum=-0.504;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr2	69565844	rs116730412	A	T	1743.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.75;ReadPosRankSum=-0.465;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr2	69573029	rs6722492	T	C	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	69581850	rs61401084	T	TA	246.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	69583873	rs67434964	AT	A	351.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.13;ReadPosRankSum=-1.961;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr2	69586293	rs6546505	A	C	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	69586370	rs67760762	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr2	69614161	rs6720415	A	G	15791.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr2	69626342	.	CA	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.525;QD=2.46;ReadPosRankSum=-0.319;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr2	69633382	rs6546513	A	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	69646504	rs7605572	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	69657349	rs113587680	CT	C	319.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,22:0.88:25
chr2	69659126	rs4453725	A	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:57,111:0.66:168
chr2	69693006	rs9309428	C	T	5487.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:128,241:0.65:369
chr2	69709919	rs6721259	A	G	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:82,41:0.33:123
chr2	69732571	.	C	CAT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=5.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.331;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:87,11:0.11:98
chr2	69741801	rs6757825	C	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:131,92:0.41:223
chr2	69741854	rs6715776	T	G	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	70014986	rs11677629	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	70015108	rs11683908	A	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr2	70031797	rs3771541	C	G	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr2	70033584	rs2228203	C	T	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:66,156:0.70:222
chr2	70033649	rs17037076	G	A	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,62:0.67:92
chr2	70039677	rs2305523	A	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	70057448	rs3732266	T	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	70064927	rs1377996	C	A	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:23,61:0.73:84
chr2	70066571	rs3832156	C	CTT	1574.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:26,71:0.73:97
chr2	70068057	rs3771533	G	A	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=2.103;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:50,82:0.62:132
chr2	70068258	rs3836157	CT	C	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	70076954	rs4852349	A	T	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.607;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	70098808	rs3214007	A	G	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.74;ReadPosRankSum=1.524;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr2	70162534	rs2228183	T	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:69,82:0.54:151
chr2	70164034	rs3771531	T	C	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:67,114:0.63:181
chr2	70164580	rs3217643	C	CAGGG	791.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr2	70188676	rs3796097	T	C	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:111,221:0.67:332
chr2	70191360	rs10203732	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr2	70392379	rs11126263	G	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr2	70392820	rs17005383	G	C	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	70454794	rs2592181	G	C	166.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	70457784	rs200532251	C	CAA	1203.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.249;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.40;ReadPosRankSum=-0.393;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:5,54:0.92:59
chr2	70485174	rs13019683	A	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=2.013;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr2	70524577	rs2618235	G	A	5412.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	70528827	rs2279159	G	A	13354.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr2	70676639	rs538118	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr2	70905099	rs2902577	T	G	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	70906115	rs2074815	C	A	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.691;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:204,83:0.29:287
chr2	70915134	rs2074820	C	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:68,39:0.36:107
chr2	70915320	rs7340254	T	A	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-0.104;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:82,50:0.38:132
chr2	70915323	rs7340145	C	T	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=0.472;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:81,47:0.37:128
chr2	70915347	rs7340146	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr2	70917768	rs12691192	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	70917812	rs10084293	C	T	1863.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.993;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.01;ReadPosRankSum=0.408;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:1,80:0.99:81
chr2	70933636	rs2287096	T	C	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr2	70933659	rs11682965	T	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr2	70995129	rs2287097	G	A	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:100,41:0.29:141
chr2	70995217	rs2287098	A	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	70995233	rs2287099	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr2	71004368	rs4533493	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	71004413	rs55926232	C	CA	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.166;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.869;QD=9.34;ReadPosRankSum=0.047;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,30:0.70:43
chr2	71004492	rs56316086	T	C	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=43.25;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	71004494	rs56135050	A	T	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=45.65;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	71012604	rs7566541	G	A	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	71012734	rs7566476	C	G	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	71017516	rs12713717	A	G	5327.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	71043461	rs722896	C	T	9890.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr2	71044211	rs2075221	C	T	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	71058835	rs741326	A	G	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	71062833	rs11450450	G	GC	8856.73	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	71162930	rs55655347	A	G	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr2	71162996	rs11685700	A	G	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:46,90:0.66:136
chr2	71163086	rs11681642	T	C	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:124,217:0.64:341
chr2	71163225	rs759219	C	T	2080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.19;ReadPosRankSum=0.692;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:82,104:0.56:186
chr2	71297598	rs41285971	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,31:0.29:106
chr2	71297695	rs2287328	T	C	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:53,96:0.64:149
chr2	71297982	rs2287327	C	T	10934.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr2	71305456	rs6713	C	T	11842.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr2	71357417	rs2012479	C	A	9226.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.42;ReadPosRankSum=-0.660;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,362:1.00:363
chr2	71357634	rs1813348	C	T	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	71357710	rs981947	G	C	7540.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	71360144	rs10199088	A	C	9021.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:2,337:0.99:339
chr2	71360625	rs1813160	G	T	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=26.32;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	71360723	rs1813159	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	71360735	rs138856662	T	TTCC	3361.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	71361332	rs9941620	T	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	71365509	rs357757	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	71365676	rs357756	G	A	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	71375065	rs357744	A	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr2	71376999	rs6574	G	A	2030.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.77;ReadPosRankSum=-0.533;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,80:0.98:82
chr2	71405776	rs436793	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:89,55:0.38:144
chr2	71415479	rs357780	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	71417065	rs357777	G	T	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	71417134	rs357776	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr2	71607539	rs17693408	G	A	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	71615534	rs2542528	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr2	71615571	rs2542529	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	71620563	rs12713748	A	G	2724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.189;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:385,170:0.31:555
chr2	71620818	rs6741436	C	T	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	71625767	rs13424541	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:43,15:0.26:58
chr2	71627539	rs3771371	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr2	71631109	rs3732235	A	G	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.430;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:72,37:0.34:109
chr2	71633275	rs3732233	T	C	1943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=-1.776;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:56,93:0.62:149
chr2	71633389	rs6714975	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	71635462	rs3755334	T	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr2	71635931	rs12466025	G	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	71636036	rs12474072	A	G	282.53	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	71645628	rs72207075	G	GT	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	71645828	rs4852783	G	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.351;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:24,41:0.63:65
chr2	71645890	rs4852784	G	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	71645946	rs4438512	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	71651691	rs150899421	G	GT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=8.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.171;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	71651939	rs12613800	T	A	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=1.157;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:69,49:0.42:118
chr2	71654175	rs1804020	G	A	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:205,128:0.38:333
chr2	71654450	rs60163900	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr2	71655586	rs28613330	T	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	71658364	rs13383758	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	71658541	rs11542286	C	T	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:204,107:0.34:311
chr2	71693943	rs61333801	G	A	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr2	71694113	rs71416709	C	T	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:281,125:0.31:406
chr2	71708810	rs34707417	T	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	71708825	.	T	TATCCATCC	216.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	71708852	.	C	CCATCCATCCATCCATCCATT	833.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr2	71744258	rs11688242	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr2	71747235	rs11675897	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:122,70:0.36:192
chr2	71747432	rs11687223	G	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr2	71747851	rs12713755	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr2	71747899	rs12713756	G	A	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:124,66:0.35:190
chr2	71753416	rs150724610	G	C	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:205,116:0.36:321
chr2	71755380	rs4852800	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr2	71762232	rs4852801	C	T	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:384,219:0.36:603
chr2	71762310	rs4852802	A	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:137,68:0.33:205
chr2	71766487	rs7609409	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:63,34:0.35:97
chr2	71776345	rs736096	CA	TG	3090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.583;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=6.041;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=2.262;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:228,90:0.28:318
chr2	71780215	rs2303596	T	C	2863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=2.582;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:378,179:0.32:557
chr2	71780821	rs2303597	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	71795152	rs2288355	A	T	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:434,218:0.33:652
chr2	71796865	rs10205023	C	G	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	71797176	rs10183967	A	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr2	71797526	rs151292792	G	A	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr2	71797712	rs3764971	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.167;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr2	71798057	.	C	CAGATCACACCCAGCATACCCAA	287.92	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=41.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	71817003	rs1473228	A	G	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	71817571	rs720541	A	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr2	71828423	rs2303604	A	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	71829821	rs1529408	G	T	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	71847943	rs12995778	C	A	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=0.546;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:16,47:0.75:63
chr2	71871039	rs84181	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	71871236	rs84182	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	71891361	rs2303599	C	T	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	71901286	rs2559081	C	T	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	71906171	rs1863812	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	71907930	rs7558412	G	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	72359312	rs2241059	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.525;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr2	72361865	rs2241058	C	A	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:113,56:0.33:169
chr2	72361960	rs2241057	A	G	1573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=2.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.316;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:295,107:0.27:402
chr2	72692272	rs5832083	A	AAG	8936.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	72707874	rs653220	A	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr2	72742083	rs57089571	GAC	G	1354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.349;QD=12.32;ReadPosRankSum=0.171;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:53,57:0.52:110
chr2	73151231	rs1561247	C	T	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	73195837	rs10565763	TTTCC	T	2302.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	73280303	.	G	GA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.153;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:188,50:0.21:238
chr2	73339430	rs4143146	T	G	10120.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:1,392:1.00:393
chr2	73339708	rs1864488	G	A	23474.77	.	AC=2;AF=1.00;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	1/1:0,877:1.00:877
chr2	73430234	rs13432787	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	73435601	rs17008862	T	C	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=0.164;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:52,87:0.63:139
chr2	73447775	rs2303904	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:43,60:0.58:103
chr2	73448174	rs2288632	C	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:19,61:0.76:80
chr2	73460293	rs70965722	AGGGCC	A	3523.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:41,91:0.69:132
chr2	73467676	rs3835072	GAA	G	7255.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:93,185:0.67:278
chr2	73477317	rs72255992	CCT	C	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr2	73490412	rs34363861	A	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:46,126:0.73:172
chr2	73491683	rs4852916	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr2	73492631	rs201133145	T	C	4885.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:129,206:0.61:335
chr2	73493303	rs13021769	T	C	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	73518533	rs2229294	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr2	73518867	rs7558708	G	A	4901.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:136,229:0.63:365
chr2	73613031	rs66480235	TGGA	T	1186.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr2	73635992	.	CTTTTTTTTT	C	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.13;ReadPosRankSum=1.919;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,19:0.90:21
chr2	73649928	rs1881245	G	A	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr2	73650122	rs1881246	T	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.817;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=5.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.214;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:136,44:0.24:180
chr2	73651967	rs3813227	C	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:32,91:0.74:123
chr2	73675019	rs66492706	CT	C	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	73675227	rs34628045	T	TCTC	19369.73	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr2	73675669	rs2037814	T	G	5808.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	73675844	rs7598901	C	T	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:283,149:0.34:432
chr2	73677833	rs6546836	A	G	9833.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:194,426:0.69:620
chr2	73677898	rs6546837	G	C	9067.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:180,376:0.68:556
chr2	73678616	rs28730853	G	T	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:98,170:0.63:268
chr2	73679280	rs6546838	A	G	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:79,152:0.66:231
chr2	73679440	rs17009061	G	A	4467.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:95,191:0.67:286
chr2	73679990	rs6724782	T	A	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:126,230:0.65:356
chr2	73680508	rs6546839	G	C	6850.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:188,307:0.62:495
chr2	73717567	rs2056486	G	T	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:91,170:0.65:261
chr2	73717656	rs10193972	A	G	5902.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:129,259:0.67:388
chr2	73761881	rs3738848	G	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr2	73784477	rs34617744	T	A	2884.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:48,127:0.73:175
chr2	73828310	rs1320374	T	C	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	73828538	rs1052161	G	A	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr2	73829372	rs1052162	C	T	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=0.768;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:63,98:0.61:161
chr2	73830454	rs116733486	AC	TT	6865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.596;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-7.819;QD=23.35;ReadPosRankSum=-1.157;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:122,172:0.59:294
chr2	73830458	rs17848872	A	G	6890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.331;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-7.819;QD=23.44;ReadPosRankSum=-1.047;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:122,172:0.59:294
chr2	73830581	.	GA	G	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.647;QD=1.14;ReadPosRankSum=0.884;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr2	73852019	.	A	G	53	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=29;MQ=46.28;NF=0;NR=5;PP=53;QD=17.5542425094;SC=TTCTGGGAAAAGAAAACCAGA;SbPval=1.0;Source=Platypus;TC=22;TCF=5;TCR=17;TR=5;WE=73852027;WS=73852009;set=Platypus	GT:AD:AF:DP	0/1:17,5:0.23:22
chr2	73868366	rs72635973	G	T	12602.77	.	AC=1;AF=0.500;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	0/1:312,578:0.65:890
chr2	73868538	rs72635972	G	A	5688.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:171,249:0.59:420
chr2	73898118	rs7570683	C	T	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	73898359	rs4341964	G	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	73899527	rs7574950	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:33,86:0.72:119
chr2	73899613	rs2421585	T	G	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	73899955	rs6725284	G	T	9002.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr2	73900210	rs4637150	A	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	73900918	rs35051622	CT	C	602.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=17.22;ReadPosRankSum=1.372;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr2	73902069	.	T	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-14.350;QD=0.30;ReadPosRankSum=-3.142;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:303,48:0.14:351
chr2	73927931	rs4852974	A	G	9848.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr2	73928078	rs62619834	C	A	5083.77	.	AC=1;AF=0.500;AN=2;DB;DP=1012;set=Intersection	GT:AD:AF:DP	0/1:708,302:0.30:1010
chr2	73928098	rs2001490	C	G	4960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=1026;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-2.207;QD=4.84;ReadPosRankSum=0.389;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:726,298:0.29:1024
chr2	73928366	rs2012574	G	C	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:286,164:0.36:450
chr2	73956940	rs67805162	CT	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=-0.902;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	73957124	rs7210	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	73957227	rs13003035	T	A	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	73957880	.	G	GA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.218;QD=0.52;ReadPosRankSum=1.417;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr2	73993436	rs34279043	CA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.484;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-1.876;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	73994074	rs2567599	G	A	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	74000701	rs2116367	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	74007136	rs2272051	T	C	12969.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr2	74007345	rs3813228	A	G	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	74089266	.	G	GA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.468;QD=0.72;ReadPosRankSum=-0.240;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr2	74128361	rs1653258	T	G	9207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=2.439;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:132,228:0.63:360
chr2	74128369	rs1632564	G	A	9619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.75;ReadPosRankSum=2.704;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:153,252:0.62:405
chr2	74128391	rs1721241	G	C	7318.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:187,328:0.64:515
chr2	74128433	rs1050146	C	T	9010.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:253,418:0.62:671
chr2	74128666	.	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	2674	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=3;MGOF=8;MMLQ=23;MQ=59.72;NF=0;NR=14;PP=2674;QD=20;SC=GAAATGTGTGTGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=38;TCF=2;TCR=36;TR=14;WE=74128721;WS=74128649;set=Platypus	GT:AD:AF:DP	1/0:24,14:0.37:38
chr2	74129664	rs1653256	A	G	10563.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:274,507:0.65:781
chr2	74129712	rs1721243	C	G	10822.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:274,492:0.64:766
chr2	74129895	rs1721244	G	A	3794.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:105,170:0.62:275
chr2	74135380	rs756127	G	A	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr2	74135797	rs702461	T	C	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr2	74135898	rs756128	A	G	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-1.241;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:82,117:0.59:199
chr2	74140581	rs891699	A	T	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:44,102:0.70:146
chr2	74140789	rs891698	T	C	5236.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:132,230:0.64:362
chr2	74140888	rs891697	A	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr2	74142164	rs35892339	GA	G	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	74146869	rs1721238	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	74153905	rs831526	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	74185876	rs4777	A	T	5142.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:135,235:0.64:370
chr2	74273383	rs11426743	T	TC	805.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=3.044;QD=6.20;ReadPosRankSum=-0.093;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:90,40:0.31:130
chr2	74300717	rs7560668	T	C	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.399;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:142,67:0.32:209
chr2	74320262	rs12713810	C	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr2	74362090	rs828879	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	74374884	rs1667605	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	74383911	rs828852	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	74448655	rs7587117	T	C	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	74466594	rs4853018	G	A	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	74481944	rs376191179	AT	A	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.509;QD=1.04;ReadPosRankSum=1.534;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr2	74489490	.	CT	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.872;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.919;QD=4.49;ReadPosRankSum=0.658;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	74595716	rs34598987	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr2	74649921	rs11685929	C	A	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=14.48;ReadPosRankSum=2.460;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:17,35:0.67:52
chr2	74720002	rs4853026	C	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	74725144	rs6546908	T	C	7666.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr2	74733834	rs41285991	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr2	74734983	.	TG	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-0.868;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:33,8:0.20:41
chr2	74756548	rs1183739	G	C	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.119;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:303,108:0.26:411
chr2	74787501	rs62147438	G	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr2	74884611	rs205650	A	G	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.486;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:38,33:0.46:71
chr2	75061873	rs663504	C	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	75099477	rs2229621	A	T	5176.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:109,233:0.68:342
chr2	75099694	rs28363003	G	A	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.009;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:57,31:0.35:88
chr2	75101237	.	G	A	160.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr2	75101454	rs2229622	T	C	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:137,230:0.63:367
chr2	75104570	rs3771760	A	G	2847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.12;ReadPosRankSum=0.911;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:33,72:0.69:105
chr2	75104575	rs3771759	G	A	2746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.86;ReadPosRankSum=-1.284;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:24,68:0.74:92
chr2	75105798	rs604112	A	G	15098.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr2	75107367	rs1807090	T	G	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:114,195:0.63:309
chr2	75113572	rs2306806	G	A	7523.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr2	75113657	rs2229626	C	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:107,73:0.41:180
chr2	75113789	rs2229627	C	G	10725.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr2	75113903	rs17741356	A	G	2537.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,104:0.65:160
chr2	75115108	rs10194657	A	G	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=26.42;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	75116627	rs4853069	C	T	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	75185856	rs12366	G	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:174,75:0.30:249
chr2	75186337	rs2287102	A	G	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:76,128:0.63:204
chr2	75187573	rs3771799	G	A	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	75187793	rs3821312	A	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	75720664	rs6741778	G	A	2345.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:233,129:0.36:362
chr2	75744918	rs2286995	T	C	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr2	75745081	rs2286994	T	C	7434.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr2	75873733	rs2286238	T	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	75874390	rs2286239	G	C	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:113,151:0.57:264
chr2	75879452	rs4853168	G	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	75881828	rs6759555	T	C	1800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=0.233;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:32,80:0.71:112
chr2	75882156	rs11324562	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.212;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	75882399	rs17689863	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:17,40:0.70:57
chr2	75892111	rs17690224	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	75900700	rs5832172	C	CA	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	75915035	rs1803196	C	T	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-1.143;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:74,71:0.49:145
chr2	75918986	rs144955620	T	TAA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.75;ReadPosRankSum=-0.842;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	75919272	rs142689014	AATAT	A	762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.51;ReadPosRankSum=-1.084;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	75919292	rs182810843	T	C	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.99;ReadPosRankSum=-0.335;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	75919294	rs116783069	T	C	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.78;ReadPosRankSum=-0.997;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:5,19:0.79:24
chr2	75919296	rs111967112	T	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.63;ReadPosRankSum=-0.784;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr2	75923413	rs7560262	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr2	75928300	rs6547019	G	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr2	75929238	rs3088180	C	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr2	75933830	rs6728499	T	A	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	77748604	rs113233659	TA	T	862.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.701;QD=10.52;ReadPosRankSum=0.781;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:27,55:0.67:82
chr2	79253029	rs385742	T	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	79253150	rs369967	A	G	3345.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:81,147:0.64:228
chr2	79253375	rs425846	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:61,120:0.66:181
chr2	79253818	rs412912	C	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr2	79253987	.	ATAGGGGAAAGT	A	781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=18.975;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-6.044;QD=6.80;ReadPosRankSum=-4.343;SOR=1.720;set=HC	GT:AD:AF:DP	0/1:91,24:0.21:115
chr2	79254000	.	CATGCA	C	778.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.647;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=13.291;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-6.764;QD=6.44;ReadPosRankSum=-4.370;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:94,27:0.22:121
chr2	79254029	rs34088535	C	CA	1893.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr2	79254065	rs431912	C	T	5699.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:180,249:0.58:429
chr2	79254101	rs396461	T	G	11888.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:288,523:0.64:811
chr2	79254261	rs452267	T	C	14908.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr2	79255325	rs2290079	G	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.908;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:101,36:0.26:137
chr2	79255426	rs383969	G	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	79312414	rs3739144	G	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:139,63:0.31:202
chr2	79313815	rs2073445	G	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.134;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:64,24:0.27:88
chr2	79314094	rs6723688	G	T	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=0.130;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:69,38:0.36:107
chr2	79348129	rs11339710	GA	G	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=3.866;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.109;QD=11.38;ReadPosRankSum=0.270;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:17,94:0.85:111
chr2	79350186	rs3739142	G	A	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	79350347	rs12228	A	G	10628.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr2	79350505	rs12072	C	T	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	79385758	rs80188986	A	C	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.218;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-7.658;QD=8.65;ReadPosRankSum=1.809;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:144,90:0.38:234
chr2	79385786	rs76653007	TG	CA	1835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.070;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=5.014;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-8.704;QD=9.71;ReadPosRankSum=-0.865;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:134,55:0.29:189
chr2	79385823	rs201139260	T	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=4.964;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-7.086;QD=0.91;ReadPosRankSum=-3.332;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:107,18:0.14:125
chr2	79750543	rs10205858	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	79878664	rs3739139	A	G	3099.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:97,151:0.61:248
chr2	79914570	rs35164413	C	CT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-0.766;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr2	79914590	rs118133156	C	A	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr2	79914689	rs75100314	G	A	1609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.94;ReadPosRankSum=1.804;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:26,75:0.74:101
chr2	79914803	rs78803334	A	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr2	80101321	rs61291641	T	G	5412.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:166,258:0.61:424
chr2	80101515	rs56849709	CA	C	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=13.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.918;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	80389721	rs144570204	G	A	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-0.968;QD=3.97;ReadPosRankSum=0.182;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:201,74:0.27:275
chr2	80529956	rs6733871	T	C	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:111,196:0.64:307
chr2	80540600	rs17018984	C	T	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.133;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=1.190;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:23,72:0.76:95
chr2	80620235	rs3770306	T	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	80772972	rs2276659	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.866;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:43,24:0.36:67
chr2	80801524	rs2276661	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr2	80809027	rs17019401	C	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	80831481	rs2302875	G	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	80846147	rs56987036	C	CT	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.809;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	84518438	rs1968722	T	C	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr2	84650707	rs2832	A	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	84676163	rs10202632	C	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	84676886	rs56733272	TAAA	T	1083.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;QD=27.79;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:1,38:0.97:39
chr2	84755996	rs35980296	A	AT	1690.92	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:18,101:0.85:119
chr2	84756049	rs4832089	G	A	7419.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr2	84756341	rs4832090	T	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	84771480	rs1037863	G	A	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	84771567	rs1542477	C	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	84775673	rs60315854	A	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	84800605	rs11891970	C	A	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	84806553	rs6547569	G	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	84822715	rs6761632	C	T	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	84834063	rs4276039	T	C	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr2	84834237	rs4441485	T	C	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	84848596	rs61733547	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr2	84896628	rs17708884	G	A	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:73,150:0.67:223
chr2	84897361	rs12470102	T	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	84897517	rs1881095	A	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	84899360	rs4832106	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	84915469	rs41490447	A	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	84924823	rs78190897	T	C	9432.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	84930815	.	G	GT	37	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9999;HP=13;HapScore=2;MGOF=8;MMLQ=25;MQ=60.0;NF=0;NR=3;PP=37;QD=14.0;SC=ATTTAGCAAAGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=3;WE=84930823;WS=84930805;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	84940477	rs4832108	T	C	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	84950006	rs1192336	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	84955129	rs75124059	T	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	85023554	rs754273	A	G	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr2	85023653	rs754274	G	C	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	85024731	rs1192395	C	T	12078.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr2	85040393	rs1192362	G	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	85040418	rs1192361	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	85041295	rs1192360	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	85041316	rs1192359	T	C	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	85051122	rs1649292	G	A	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	85066245	rs736711	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	85108252	rs34667238	G	GC	1541.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=36.71;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	85133216	rs7148	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:277,132:0.32:409
chr2	85133320	rs12471929	C	T	3847.77	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:432,235:0.35:667
chr2	85360828	.	GGGC	G	1036.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.674;QD=15.25;ReadPosRankSum=0.726;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr2	85510777	rs7574856	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr2	85532205	rs6741339	C	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	85549868	rs4240199	A	G	12554.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.08;ReadPosRankSum=0.878;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:2,402:1.00:404
chr2	85549874	rs3637	A	G	18314.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	85552186	rs7572750	C	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	85553784	rs1044973	C	T	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr2	85554080	rs4247303	G	A	21596.77	.	AC=2;AF=1.00;AN=2;DB;DP=779;set=Intersection	GT:AD:AF:DP	1/1:0,777:1.00:777
chr2	85570186	rs4832001	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	85570942	rs9309620	G	C	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:10,57:0.85:67
chr2	85571710	rs4832171	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	85573033	rs908302	G	A	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	85573049	rs908304	G	A	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	85766545	rs2289972	C	T	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr2	85769246	rs1078005	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	85769711	rs1078004	C	G	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	85769975	rs2043675	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:42,12:0.22:54
chr2	85777270	rs2028898	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr2	85778193	rs56165933	C	T	1783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=2.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=-0.688;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:203,104:0.34:307
chr2	85779050	rs41290033	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:124,89:0.42:213
chr2	85780107	rs10179904	G	A	6563.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:161,296:0.65:457
chr2	85780131	rs2592551	G	A	3052.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:315,176:0.36:491
chr2	85780536	rs699664	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:156,83:0.35:239
chr2	85781318	rs1254896	T	G	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	85788175	rs7568458	T	A	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	85788401	rs11350741	GA	G	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	85806068	rs3731827	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	85806266	rs3731828	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-1.722;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr2	85807082	rs1348818	T	A	192.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.814;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	85808594	rs11326680	CA	C	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-1.448;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,31:0.79:39
chr2	85808737	rs1009	A	G	9346.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr2	85808871	rs1058588	C	T	6540.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	85811592	rs11311	C	T	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr2	85818797	rs2289976	G	A	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	85818886	rs14976	C	T	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	85820027	rs72843872	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	85823167	rs35880310	TG	T	1319.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	85824084	rs2232748	G	C	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr2	85826132	rs1044158	G	A	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	85826721	rs11891495	G	A	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	85828014	rs6733550	T	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	85848747	.	CTT	C,CT	1481.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=2.122;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.854;QD=11.67;ReadPosRankSum=1.567;SOR=0.484;set=HC	GT:AD:AF:DP	1/2:18,31,78:0.24,0.61:127
chr2	85863116	.	GTTTA	GTA,G	3456.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=76;set=Intersection	GT:AF:DP	1/1:1.00:76
chr2	85863119	.	T	C	3465.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	85863120	rs201820696	AAG	A	3457.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	85863121	.	AG	CA	2092	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=42;NR=15;PP=2092;QD=37.6397872783;SC=GCATGGTTTAAGTTAACTCTA;SbPval=0.73;Source=Platypus;TC=62;TCF=43;TCR=19;TR=57;WE=85863130;WS=85863106;set=Platypus	GT:AD:AF:DP	1/1:5,57:0.92:62
chr2	85890758	rs2304566	T	C	7324.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	85890771	rs893159	T	G	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	85893616	.	C	CTG	733.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr2	85894308	rs3024798	G	T	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:76,139:0.65:215
chr2	85895338	rs2077079	T	G	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr2	85921353	rs1866140	G	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr2	85921389	rs1866139	G	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr2	85921992	rs2043760	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	85924729	rs11127	C	T	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:92,157:0.63:249
chr2	85924899	rs1437742	T	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr2	85925529	rs4240200	A	G	4288.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:145,192:0.57:337
chr2	85925667	rs4240201	G	A	13943.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:203,368:0.64:571
chr2	85925680	rs4240202	T	G	13518.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:191,342:0.64:533
chr2	85925756	rs7908	C	G	6301.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:175,299:0.63:474
chr2	85925848	rs12845	C	G	3568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=3.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=0.326;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:80,156:0.66:236
chr2	85981761	rs17851881	T	C	7256.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	86107840	rs11127008	G	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr2	86107951	rs34410645	GA	G	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.855;QD=6.24;ReadPosRankSum=1.802;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	86107987	rs11127009	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr2	86116168	rs28364795	GA	TG	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;JOINED;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	86259443	rs2276626	C	T	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=971;set=Intersection	GT:AD:AF:DP	0/1:670,298:0.31:968
chr2	86260785	rs78239085	C	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr2	86269163	rs34892520	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:73,47:0.39:120
chr2	86272309	rs61254540	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr2	86272350	rs61185790	C	G	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,83:0.62:133
chr2	86276395	rs10184159	C	G	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,45:0.61:74
chr2	86279927	rs142989159	G	A	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-2.326;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr2	86297433	rs192552817	C	T	2407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.876;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:61,111:0.65:172
chr2	86302103	rs3815840	A	G	151.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr2	86302409	rs2288116	A	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:37,92:0.71:129
chr2	86304932	.	GCGCA	G	52.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:26,4:0.13:30
chr2	86304934	.	GCACACACA	G	966.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=0.331;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr2	86304944	.	A	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.26;ReadPosRankSum=-0.253;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr2	86305123	rs2288117	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:74,97:0.57:171
chr2	86305534	rs74607112	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	86307884	rs3217271	CAG	C	706.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr2	86317037	rs4832242	G	C	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr2	86333051	rs17026904	G	T	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr2	86338298	rs56955251	G	GT	419.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr2	86343840	rs60460813	C	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	86344237	rs3764948	A	G	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=0.923;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:24,53:0.69:77
chr2	86344367	rs2059353	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr2	86346308	rs6715623	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	86352010	rs4832250	G	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	86363855	rs7558040	G	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	86364353	rs2241434	A	G	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr2	86364653	rs2241433	A	G	2125.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:46,91:0.66:137
chr2	86364706	rs56274257	TG	T	767.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	86373488	rs143817586	TATATA	T	65.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.737;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	86373493	rs147978838	AATATAT	A	59.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.027;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	86385886	rs6739460	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	86400791	rs59649940	T	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.31;ReadPosRankSum=0.433;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chr2	86422416	rs17551822	T	C	5787.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:155,265:0.63:420
chr2	86434569	rs9309634	T	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	86437551	rs7565645	T	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr2	86479035	rs12988844	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	86479287	rs17438687	G	T	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:48,92:0.66:140
chr2	86491317	rs139506658	T	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr2	86507135	rs58029983	A	G	3212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=0.175;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:55,149:0.73:204
chr2	86507205	rs57412282	C	T	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-1.450;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:53,136:0.72:189
chr2	86509388	rs1863059	T	G	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:57,84:0.60:141
chr2	86564462	rs187407143	C	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	86678124	rs57145635	A	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=2.595;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr2	86682149	rs376781531	TTAAA	T	775.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	86682417	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.378;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	86683642	rs2030259	A	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=-0.558;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr2	86684015	.	T	TA	1994.73	.	AC=1;AF=0.500;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	0/1:43,89:0.67:132
chr2	86691250	rs12714187	G	A	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:76,140:0.65:216
chr2	86707504	rs4832290	T	C	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.23;ReadPosRankSum=-1.298;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:52,80:0.61:132
chr2	86716716	.	G	A	5151.77	.	AC=1;AF=0.500;AN=2;DP=364;set=Intersection	GT:AD:AF:DP	0/1:128,235:0.65:363
chr2	86737649	rs966477	G	A	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:48,93:0.66:141
chr2	86756209	rs1036940	C	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	86850022	rs396354	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:28,80:0.74:108
chr2	86947783	rs76239019	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr2	86978895	rs4832311	G	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	86979093	rs10186663	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr2	86992337	rs3840984	T	TAA	2384.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr2	86998659	rs56328788	CT	C	1647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=8.598;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.991;QD=6.34;ReadPosRankSum=1.503;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:109,151:0.58:260
chr2	87015633	rs71378806	T	TGA	2999.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr2	87042825	rs35555413	T	C	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.649;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=1.794;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:47,82:0.64:129
chr2	87048702	rs13001400	T	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	87060359	rs62146088	C	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr2	87069379	rs4322832	G	A	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.93;MQRankSum=-1.077;QD=19.28;ReadPosRankSum=-0.379;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:15,48:0.76:63
chr2	87069431	rs4514875	C	T	1798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.90;MQRankSum=-3.023;QD=19.77;ReadPosRankSum=-0.861;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:22,69:0.76:91
chr2	87073743	rs4971887	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:54,52:0.49:106
chr2	87073852	rs2228022	C	T	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:89,133:0.60:222
chr2	87073921	rs115819014	G	A	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:60,99:0.62:159
chr2	87089092	rs116604156	G	T	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=54.80;MQRankSum=-1.752;QD=2.44;ReadPosRankSum=-2.495;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	87092750	rs70958910	C	CA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.277;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.888;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-2.014;QD=3.69;ReadPosRankSum=-0.118;SOR=1.860;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr2	87355912	rs201336213	C	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.204;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=6.070;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-6.428;QD=0.75;ReadPosRankSum=1.228;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:259,42:0.14:301
chr2	87356024	rs3101261	C	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr2	87356038	rs201869954	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr2	88328208	rs12328217	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	88387365	rs78009515	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr2	88387403	rs1542088	C	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr2	88387557	rs1542087	A	C	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.740;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:236,117:0.33:353
chr2	88395989	rs2197077	G	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	88396080	rs2919883	A	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr2	88396120	rs2919882	G	A	2049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.33;ReadPosRankSum=-0.871;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:87,56:0.39:143
chr2	88396123	rs2970912	C	G	2159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-1.085;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:93,61:0.40:154
chr2	88396174	rs2919881	T	C	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.555;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:150,79:0.34:229
chr2	88402511	rs1866946	C	A	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr2	88402560	rs894197	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.064;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr2	88406108	rs2919862	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.172;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr2	88407959	rs2970918	T	C	2744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=1.247;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:243,154:0.39:397
chr2	88409719	.	A	AGAGTGTGT	584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.041;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.58;ReadPosRankSum=0.108;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	88410102	rs2289497	C	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	88411605	rs2919865	A	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:236,114:0.33:350
chr2	88411793	rs2970888	C	A	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	88422758	rs2197076	G	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	88424066	rs2241883	T	C	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:99,138:0.58:237
chr2	88472791	rs4129190	G	A	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	88474370	rs2139100	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	88484808	rs2292869	C	A	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.306;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:170,80:0.32:250
chr2	88485392	rs1878810	G	C	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	88751751	rs11456039	A	AG	903.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	88826071	rs58882124	G	C	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:166,77:0.32:243
chr2	88826219	rs56783496	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr2	88870632	rs4972221	A	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr2	88874891	rs1805165	C	A	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:177,85:0.32:262
chr2	88879131	rs1805164	T	C	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:182,97:0.35:279
chr2	88895123	rs13045	T	C	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.738;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:194,76:0.28:270
chr2	88895351	rs7571971	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:129,55:0.30:184
chr2	88913273	rs867529	G	C	6066.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:165,276:0.63:441
chr2	88926729	rs72416210	CCAG	C	3412.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	88997878	rs908277	C	T	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr2	88999476	rs1158603	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:228,90:0.28:318
chr2	89160889	rs232224	G	T	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:355,155:0.30:510
chr2	89161069	rs113458930	G	C	14268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=-0.233;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:211,360:0.63:571
chr2	89161072	rs113539064	T	C	7726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=0.656;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:216,357:0.62:573
chr2	89161322	rs232223	C	G	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:284,133:0.32:417
chr2	89161547	rs232222	A	G	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	89512775	rs145409842	T	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	89512854	rs77255451	A	C	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:164,99:0.38:263
chr2	89513365	rs181706250	A	G	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:44,52:0.54:96
chr2	90007670	rs2847917	G	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	90008208	rs138920656	T	G	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=-1.954;QD=4.80;ReadPosRankSum=-0.312;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:181,71:0.28:252
chr2	90008287	rs147071425	A	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	90043509	rs201839533	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.59;QD=25.46;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	90108416	rs859744	G	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	90108778	rs859745	G	T	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	91766685	rs2258279	GA	TG	6470.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;JOINED;set=Intersection	GT:AD:AF:DP	0/1:219,186:0.46:405
chr2	91767199	rs2558010	A	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:72,29:0.29:101
chr2	91767507	rs2580541	T	A	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.860;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.149;QD=2.16;ReadPosRankSum=-0.950;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:241,54:0.18:295
chr2	91809227	rs2536993	A	G	4895.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:274,246:0.47:520
chr2	91809324	rs2536994	C	T	9300.77	.	AC=1;AF=0.500;AN=2;DB;DP=1483;set=Intersection	GT:AD:AF:DP	0/1:974,506:0.34:1480
chr2	91809385	rs55812636	C	G	8697.77	.	AC=1;AF=0.500;AN=2;DB;DP=1394;set=Intersection	GT:AD:AF:DP	0/1:943,450:0.32:1393
chr2	91809404	rs55918232	G	C	7837.77	.	AC=1;AF=0.500;AN=2;DB;DP=1239;set=Intersection	GT:AD:AF:DP	0/1:823,403:0.33:1226
chr2	91809453	.	T	TAA	780.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=716;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-11.247;QD=1.13;ReadPosRankSum=3.955;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:624,65:0.09:689
chr2	91809454	.	GGT	G	780.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=696;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-10.950;QD=1.12;ReadPosRankSum=4.340;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:630,64:0.09:694
chr2	91809456	rs2191971	T	G	1640.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-14.333;QD=2.43;ReadPosRankSum=4.737;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:546,130:0.19:676
chr2	91809468	.	C	CTAA	6505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DP=593;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-18.043;QD=11.12;ReadPosRankSum=7.760;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:402,183:0.31:585
chr2	91809470	rs2386154	G	A	6485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-17.703;QD=11.34;ReadPosRankSum=7.014;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:389,183:0.32:572
chr2	91809472	.	G	GTGACTAACAA	6553.73	.	AC=1;AF=0.500;AN=2;DP=562;set=Intersection	GT:AD:AF:DP	0/1:381,179:0.32:560
chr2	91925022	rs28577290	C	A	1187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=8.123;MLEAC=1;MLEAF=0.500;MQ=47.38;MQRankSum=-1.743;QD=8.61;ReadPosRankSum=1.575;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:78,60:0.43:138
chr2	91927348	rs115528025	G	A	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:51,92:0.64:143
chr2	91960776	rs372330500	AG	A	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	95537871	rs377160464	GC	G	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-1.262;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr2	95539487	rs77715120	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr2	95818809	rs79435252	C	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr2	95830737	rs11395151	C	CA	2635.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	95846158	rs3112230	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	95847040	rs10578519	TGCG	T	11863.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr2	95940500	.	C	T	1992.77	.	AC=1;AF=0.500;AN=2;DP=332;set=Intersection	GT:AD:AF:DP	0/1:222,110:0.33:332
chr2	95942203	rs114081176	G	T	7960.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:145,328:0.69:473
chr2	95944902	rs61086044	A	AC	880.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	95945568	rs7585914	G	A	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr2	95945830	rs7586229	G	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	95947085	rs12992066	A	G	12115.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr2	95952177	rs7602232	C	G	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	95952641	rs1006021	A	G	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:300,140:0.32:440
chr2	95963242	rs2248415	C	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=4.905;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	96012907	rs7602807	C	G	10895.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr2	96048859	rs200310184	GCCCACCCGCCCATCCA	G	633.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=12.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=1.781;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr2	96048862	rs58372613	C	T	412.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr2	96076409	rs6577014	C	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	96195504	rs75098566	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr2	96464662	.	G	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.27;MQRankSum=-1.611;QD=10.78;ReadPosRankSum=1.611;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	96601240	rs199988716	G	A	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=13.129;MLEAC=1;MLEAF=0.500;MQ=46.16;MQRankSum=-10.158;QD=5.71;ReadPosRankSum=-2.126;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:158,76:0.32:234
chr2	96601296	rs145876416	A	ATGATTAAT	3803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=4.010;MLEAC=1;MLEAF=0.500;MQ=46.65;MQRankSum=-15.007;QD=12.68;ReadPosRankSum=2.554;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:195,105:0.35:300
chr2	96601312	rs201144574	G	A	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:194,111:0.36:305
chr2	96601345	rs149389865	T	C	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=47.00;MQRankSum=-12.258;QD=5.02;ReadPosRankSum=0.112;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:142,69:0.33:211
chr2	96601364	rs148485539	C	T	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.008;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=12.752;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-10.595;QD=4.81;ReadPosRankSum=1.407;SOR=1.640;set=HC	GT:AD:AF:DP	0/1:125,48:0.28:173
chr2	96604516	rs62154560	C	T	4556.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:127,205:0.62:332
chr2	96604591	rs62154561	A	G	7874.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:320,394:0.55:714
chr2	96604632	rs62154562	A	T	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:261,296:0.53:557
chr2	96604679	rs62154563	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:149,88:0.37:237
chr2	96604730	rs113311459	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr2	96606944	rs78739183	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.78;MQRankSum=-4.582;QD=3.47;ReadPosRankSum=0.963;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr2	96606952	rs139886833	TA	T	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.529;MLEAC=1;MLEAF=0.500;MQ=54.31;MQRankSum=-4.097;QD=3.61;ReadPosRankSum=2.160;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:35,22:0.39:57
chr2	96606985	rs79451673	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-4.614;QD=1.05;ReadPosRankSum=-1.590;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr2	96606998	rs201633069	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-3.792;QD=1.03;ReadPosRankSum=-0.708;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:50,5:0.09:55
chr2	96607117	.	A	ATT	94	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=28;MQ=57.84;NF=0;NR=2;PP=94;QD=60.5;SC=GAAAAAAGAAACATAAAAACA;SbPval=1.0;Source=Platypus;TC=13;TCF=2;TCR=11;TR=2;WE=96607126;WS=96607107;set=Platypus	GT:AD:AF:DP	0/1:11,2:0.15:13
chr2	96607118	.	C	T	86	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=4;HapScore=3;MGOF=6;MMLQ=28;MQ=57.84;NF=0;NR=2;PP=86;QD=60.3856062736;SC=AAAAAAGAAACATAAAAACAA;SbPval=1.0;Source=Platypus;TC=13;TCF=2;TCR=11;TR=2;WE=96607126;WS=96607107;set=Platypus	GT:AD:AF:DP	0/1:11,2:0.15:13
chr2	96610329	rs201777230	G	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.418;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-14.988;QD=0.65;ReadPosRankSum=-6.114;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:235,39:0.14:274
chr2	96610395	rs147285461	C	CA	1982.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-20.702;QD=4.15;ReadPosRankSum=7.795;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:401,77:0.16:478
chr2	96610399	rs116594293	C	A	1970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.278;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-20.703;QD=4.05;ReadPosRankSum=7.571;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:410,77:0.16:487
chr2	96610410	rs77220524	T	A	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.978;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=0.729;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-21.463;QD=3.99;ReadPosRankSum=5.030;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:412,77:0.16:489
chr2	96610413	rs74491979	C	T	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-21.418;QD=4.02;ReadPosRankSum=4.077;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:410,77:0.16:487
chr2	96610420	rs78473403	G	T	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.867;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-20.402;QD=4.38;ReadPosRankSum=1.058;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:383,77:0.17:460
chr2	96610455	.	C	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-16.355;QD=0.52;ReadPosRankSum=-5.923;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:278,45:0.14:323
chr2	96610759	rs377016561	T	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=17.290;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-9.109;QD=2.49;ReadPosRankSum=-3.217;SOR=3.659;set=HC	GT:AD:AF:DP	0/1:93,13:0.12:106
chr2	96610768	rs376183764	T	G	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.834;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=27.495;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-10.956;QD=2.92;ReadPosRankSum=-3.254;SOR=4.553;set=HC	GT:AD:AF:DP	0/1:112,20:0.15:132
chr2	96610787	rs112708872	C	CA	1765.73	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:144,46:0.24:190
chr2	96610836	rs11893977	T	C	8182.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:324,294:0.48:618
chr2	96610899	rs62154593	T	C	22443.77	.	AC=1;AF=0.500;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	0/1:397,591:0.60:988
chr2	96610921	rs62154594	T	G	22432.77	.	AC=1;AF=0.500;AN=2;DB;DP=952;set=Intersection	GT:AD:AF:DP	0/1:359,583:0.62:942
chr2	96610952	rs62154595	T	C	13791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-6.219;QD=19.84;ReadPosRankSum=-0.641;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:241,454:0.65:695
chr2	96610958	rs79852024	G	T	3582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-3.476;QD=5.70;ReadPosRankSum=-0.234;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:420,209:0.33:629
chr2	96611018	rs62154596	G	A	3142.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:80,111:0.58:191
chr2	96616313	.	A	ATT	437.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	96616348	rs62154609	C	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr2	96616353	rs150793442	GT	G	1005.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr2	96616355	rs62154610	T	C	1014.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr2	96616378	rs62154611	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr2	96616442	rs74960926	C	A	3439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-12.705;QD=13.18;ReadPosRankSum=2.935;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:165,96:0.37:261
chr2	96616448	rs76503749	G	T	3362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-11.647;QD=12.74;ReadPosRankSum=3.387;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:171,93:0.35:264
chr2	96616485	rs78218362	C	G	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:157,82:0.34:239
chr2	96616501	.	C	CAA	2197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=6.223;MLEAC=1;MLEAF=0.500;MQ=54.25;MQRankSum=-6.375;QD=10.22;ReadPosRankSum=-1.557;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:149,66:0.31:215
chr2	96616505	rs373114066	AGC	A	2063.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=9.281;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-6.708;QD=10.12;ReadPosRankSum=-1.087;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:147,57:0.28:204
chr2	96616532	rs112676430	T	G	1265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.417;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=14.655;MLEAC=1;MLEAF=0.500;MQ=52.41;MQRankSum=-5.635;QD=7.72;ReadPosRankSum=-1.252;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:128,36:0.22:164
chr2	96616571	rs146478446	C	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.408;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=10.823;MLEAC=1;MLEAF=0.500;MQ=47.20;MQRankSum=-4.857;QD=1.41;ReadPosRankSum=-0.405;SOR=2.606;set=HC	GT:AD:AF:DP	0/1:80,10:0.11:90
chr2	96616576	rs143490798	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.062;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.057;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=-4.462;QD=0.83;ReadPosRankSum=0.183;SOR=2.075;set=HC	GT:AD:AF:DP	0/1:76,8:0.10:84
chr2	96616580	rs201649771	A	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.483;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.848;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=-4.175;QD=0.95;ReadPosRankSum=0.495;SOR=1.770;set=HC	GT:AD:AF:DP	0/1:73,7:0.09:80
chr2	96616597	rs114583836	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.300;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.843;MLEAC=1;MLEAF=0.500;MQ=47.22;MQRankSum=-4.094;QD=1.60;ReadPosRankSum=-0.745;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:63,7:0.10:70
chr2	96616599	rs116630524	G	A	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-4.436;QD=1.11;ReadPosRankSum=-0.925;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:61,7:0.10:68
chr2	96616607	rs141967446	G	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-4.144;QD=1.05;ReadPosRankSum=-0.682;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:49,5:0.09:54
chr2	96616654	rs75283408	C	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.358;MLEAC=1;MLEAF=0.500;MQ=50.57;MQRankSum=-2.160;QD=4.67;ReadPosRankSum=-0.167;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr2	96616667	rs77249402	A	C	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.548;MLEAC=1;MLEAF=0.500;MQ=51.84;MQRankSum=-0.189;QD=11.72;ReadPosRankSum=-0.528;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr2	96616690	rs111409549	T	C	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.877;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-0.200;QD=15.36;ReadPosRankSum=2.248;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	96616947	rs74369410	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQRankSum=-6.019;QD=10.71;ReadPosRankSum=-1.751;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	96616951	rs74904196	A	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.124;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=52.97;MQRankSum=-6.316;QD=12.34;ReadPosRankSum=-2.051;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr2	96616957	rs76255864	A	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.42;MQRankSum=-6.628;QD=12.58;ReadPosRankSum=-1.155;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr2	96616967	rs77784489	G	C	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-6.946;QD=13.89;ReadPosRankSum=-0.333;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr2	96616976	rs76077075	A	G	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.956;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.935;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=-7.653;QD=15.05;ReadPosRankSum=0.364;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:48,32:0.40:80
chr2	96616979	rs80105408	G	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.904;MLEAC=1;MLEAF=0.500;MQ=54.49;MQRankSum=-7.580;QD=14.64;ReadPosRankSum=0.591;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:49,33:0.40:82
chr2	96616997	rs74701498	T	G	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.266;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-7.418;QD=13.51;ReadPosRankSum=1.821;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:57,39:0.41:96
chr2	96617023	rs78346055	C	A	2351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-7.128;QD=14.70;ReadPosRankSum=2.110;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:99,61:0.38:160
chr2	96617023	.	CAC	AAA	2212	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=3;HapScore=2;MGOF=38;MMLQ=20;MQ=55.99;NF=31;NR=22;PP=2212;QD=42.7446768842;SC=GACTGTGTTTCACAAAGAAAA;SbPval=0.4;Source=Platypus;TC=184;TCF=114;TCR=70;TR=53;WE=96617047;WS=96617013;set=Platypus	GT:AD:AF:DP	1/0:131,53:0.29:184
chr2	96617025	rs72492186	C	A	2477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.105;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-6.915;QD=14.84;ReadPosRankSum=1.893;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:103,64:0.38:167
chr2	96617039	.	A	AC	1835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-6.712;QD=9.00;ReadPosRankSum=2.250;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:128,76:0.37:204
chr2	96617069	rs72935831	A	G	3149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=2.683;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-10.275;QD=10.13;ReadPosRankSum=0.692;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:215,96:0.31:311
chr2	96617090	rs72935833	A	G	3177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=2.665;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-9.122;QD=9.63;ReadPosRankSum=-1.275;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:237,93:0.28:330
chr2	96617106	rs76943414	A	C	3125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-8.314;QD=9.53;ReadPosRankSum=-1.891;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:242,86:0.26:328
chr2	96617111	rs76474100	G	A	2758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.107;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-7.993;QD=8.59;ReadPosRankSum=-1.334;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:241,80:0.25:321
chr2	96617113	rs80297803	G	A	2638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.561;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-8.018;QD=8.30;ReadPosRankSum=-1.315;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:239,79:0.25:318
chr2	96617125	rs75585230	T	C	2419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-7.680;QD=7.71;ReadPosRankSum=-0.183;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:241,73:0.23:314
chr2	96617132	rs75695780	T	C	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-8.093;QD=7.64;ReadPosRankSum=-0.180;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:231,71:0.24:302
chr2	96617155	rs76752473	A	G	1970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-8.917;QD=7.47;ReadPosRankSum=0.744;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:202,62:0.23:264
chr2	96617194	rs75924615	A	G	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.53;MQRankSum=-8.290;QD=7.30;ReadPosRankSum=0.955;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:128,43:0.25:171
chr2	96617209	rs74343816	G	T	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:104,37:0.26:141
chr2	96617228	rs78924901	T	A	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-6.491;QD=8.88;ReadPosRankSum=0.604;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr2	96617231	rs2443879	G	A	1127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.043;MLEAC=1;MLEAF=0.500;MQ=52.26;MQRankSum=-8.374;QD=13.11;ReadPosRankSum=-2.599;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:50,36:0.42:86
chr2	96617256	rs2438948	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=7.592;MLEAC=1;MLEAF=0.500;MQ=54.93;MQRankSum=-6.467;QD=9.58;ReadPosRankSum=1.125;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr2	96617262	rs199817817	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.105;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-5.927;QD=6.74;ReadPosRankSum=1.338;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr2	96617304	rs79484660	A	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr2	96619612	rs143611798	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=14.478;MLEAC=1;MLEAF=0.500;MQ=52.79;MQRankSum=-6.618;QD=2.46;ReadPosRankSum=-0.534;SOR=3.329;set=HC	GT:AD:AF:DP	0/1:75,16:0.18:91
chr2	96619641	rs200910276	AA	CT	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=51.897;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.56;MQRankSum=-9.734;QD=5.82;ReadPosRankSum=-0.163;SOR=5.814;set=HC	GT:AD:AF:DP	0/1:135,34:0.20:169
chr2	96619688	rs74946480	T	G	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:277,121:0.30:398
chr2	96619734	rs62154618	C	T	5475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-13.845;QD=10.51;ReadPosRankSum=-1.522;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:323,198:0.38:521
chr2	96619735	rs200095242	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=1.434;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-5.700;QD=2.13;ReadPosRankSum=-2.081;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:420,102:0.20:522
chr2	96619774	rs77522461	G	A	5918.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:240,165:0.41:405
chr2	96619799	rs145806545	A	C	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:169,158:0.48:327
chr2	96619831	rs76870447	T	C	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.323;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=8.755;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-10.962;QD=4.68;ReadPosRankSum=-2.701;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:130,56:0.30:186
chr2	96619832	rs79037822	A	G	4172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-6.725;QD=24.26;ReadPosRankSum=-0.468;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:69,103:0.60:172
chr2	96619837	rs77007933	CA	GC	3771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.561;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.703;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.79;MQRankSum=-6.217;QD=24.65;ReadPosRankSum=-0.647;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:61,92:0.60:153
chr2	96619853	rs201388512	T	C	2928.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:47,72:0.61:119
chr2	96619873	rs111807008	C	A	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr2	96688990	rs2278564	C	T	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:215,111:0.34:326
chr2	96698185	rs375306245	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:76,48:0.39:124
chr2	96780716	rs2229169	T	G	25335.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	1/1:0,962:1.00:962
chr2	96780986	rs29000568	C	CTCCTCCTCT	29433.73	.	AC=2;AF=1.00;AN=2;DB;DP=766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.32;QD=44.33;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,664:1.00:664
chr2	96781257	rs9333568	C	G	8110.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:173,372:0.68:545
chr2	96781986	rs3111873	G	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	96795857	rs749458	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=1.674;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr2	96852842	rs367591402	GA	G	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.715;QD=1.21;ReadPosRankSum=0.065;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:127,40:0.24:167
chr2	96858914	rs997548	A	G	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:308,141:0.31:449
chr2	96859034	rs997547	A	G	3225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.232;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:490,206:0.30:696
chr2	96861159	rs2276650	C	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:96,44:0.31:140
chr2	96874590	rs6725867	TT	CC	10882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=1000;ExcessHet=3.0103;FS=0.564;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.042;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:686,313:0.31:999
chr2	96919642	rs3852673	C	T	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:188,113:0.38:301
chr2	96934504	rs62153033	T	C	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr2	96943473	rs3214063	T	C	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:161,83:0.34:244
chr2	96950487	rs71791481	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=1.110;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	96952833	rs3171927	A	G	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:195,92:0.32:287
chr2	96955480	rs3214058	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	96956315	rs772176	T	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	96962859	rs17479466	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	96966661	rs3731930	G	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:126,73:0.37:199
chr2	96991492	rs772174	A	G	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:238,123:0.34:361
chr2	96993757	rs2279105	C	T	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:461,230:0.33:691
chr2	96993884	rs1048675	A	G	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:254,117:0.32:371
chr2	97020049	rs3731935	T	C	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.309;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:130,65:0.33:195
chr2	97026576	rs62153915	C	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr2	97030247	rs2305935	T	C	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:177,83:0.32:260
chr2	97166204	rs3731938	A	G	4331.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:481,249:0.34:730
chr2	97267260	rs6759099	G	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	97267293	rs6749159	T	C	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:85,42:0.33:127
chr2	97267644	rs62154845	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.824;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr2	97271410	.	GACC	G	246.73	.	AC=1;AF=0.500;AN=2;DP=21;MQ=60.51;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr2	97313450	rs60959055	C	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:120,48:0.29:168
chr2	97319534	rs17685766	G	C	323.85	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr2	97326286	rs4907246	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr2	97369546	.	C	CTTT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.000;QD=6.47;ReadPosRankSum=-0.816;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	97529360	rs59271006	T	A	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,65:0.40:162
chr2	97544089	rs6750988	G	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:172,70:0.29:242
chr2	97559759	rs11677797	G	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.401;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:137,56:0.29:193
chr2	97560913	rs4907206	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr2	97587049	rs34895357	T	C	1487.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:41,58:0.59:99
chr2	97595109	rs6725927	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:49,56:0.53:105
chr2	97613616	rs1624844	T	C	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.31;ReadPosRankSum=2.010;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:45,93:0.67:138
chr2	97613748	rs1623881	C	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:11,47:0.81:58
chr2	97617140	rs1257019	T	C	5492.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:128,248:0.66:376
chr2	97617227	rs1257018	A	G	3292.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:68,152:0.69:220
chr2	97637516	rs6714860	T	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr2	97637905	rs6715329	T	C	4492.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:108,200:0.65:308
chr2	97638038	rs1730120	A	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr2	97643576	rs1796048	T	C	6773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=2.576;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:159,304:0.66:463
chr2	97747978	rs1257094	C	T	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.737;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-3.399;QD=15.01;ReadPosRankSum=-0.230;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:28,39:0.58:67
chr2	97751782	rs62155549	TG	CA	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.604;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.967;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.27;MQRankSum=-7.576;QD=18.04;ReadPosRankSum=-1.215;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr2	97751786	rs62155551	G	A	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.806;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.911;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-7.759;QD=17.45;ReadPosRankSum=-0.560;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:49,42:0.46:91
chr2	97757509	rs1257084	C	T	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:63,131:0.68:194
chr2	97814956	rs4386368	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-1.441;QD=12.09;ReadPosRankSum=-1.560;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr2	97817511	rs62153867	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.217;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=29.158;MLEAC=1;MLEAF=0.500;MQ=40.09;MQRankSum=-5.027;QD=4.94;ReadPosRankSum=-0.582;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr2	97817545	rs80259985	A	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.562;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=45.545;MLEAC=1;MLEAF=0.500;MQ=39.24;MQRankSum=-5.948;QD=9.86;ReadPosRankSum=2.712;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr2	97817563	rs112026456	C	CA	531.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-6.916;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=35.803;MLEAC=1;MLEAF=0.500;MQ=39.02;MQRankSum=-6.220;QD=7.28;ReadPosRankSum=4.488;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr2	97817564	rs33971912	C	CT,T	2605.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=40.02;QD=34.74;SOR=2.599;set=HC	GT:AD:AF:DP	1/2:0,57,18:0.76,0.24:75
chr2	97817578	rs113800206	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.373;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=15.307;MLEAC=1;MLEAF=0.500;MQ=46.36;MQRankSum=-6.450;QD=4.51;ReadPosRankSum=4.654;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:86,18:0.17:104
chr2	97817726	.	G	GT	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.535;QD=2.88;ReadPosRankSum=0.459;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:124,54:0.30:178
chr2	97817801	rs113485498	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-7.655;QD=0.40;ReadPosRankSum=2.419;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:77,7:0.08:84
chr2	97817811	rs377439829	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-7.181;QD=0.70;ReadPosRankSum=2.182;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:67,7:0.09:74
chr2	97817817	rs77108155	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-6.880;QD=1.20;ReadPosRankSum=1.604;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:61,7:0.10:68
chr2	97817821	rs370583449	C	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-6.829;QD=1.13;ReadPosRankSum=1.246;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:60,7:0.10:67
chr2	97818101	.	T	G	164	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=3;MGOF=17;MMLQ=28;MQ=48.1;NF=7;NR=1;PP=164;QD=24.8464015684;SC=TCAAACTCCTTGGCTTCTCAA;SbPval=0.85;Source=Platypus;TC=32;TCF=25;TCR=7;TR=8;WE=97818122;WS=97818091;set=Platypus	GT:AD:AF:DP	1/0:24,8:0.25:32
chr2	97818114	.	G	T	164	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=3;MGOF=17;MMLQ=24;MQ=47.84;NF=7;NR=2;PP=164;QD=22.085690283;SC=CTTCTCAAGTGATACTTCTGC;SbPval=0.67;Source=Platypus;TC=37;TCF=28;TCR=9;TR=9;WE=97818122;WS=97818091;set=Platypus	GT:AD:AF:DP	1/0:28,9:0.24:37
chr2	97818161	rs74715701	C	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=48.16;MQRankSum=-4.427;QD=2.45;ReadPosRankSum=-0.176;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:53,6:0.10:59
chr2	97818169	rs76008235	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.321;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-4.572;QD=2.56;ReadPosRankSum=-0.828;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:58,9:0.13:67
chr2	97818188	rs141129874	T	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.687;MLEAC=1;MLEAF=0.500;MQ=46.24;MQRankSum=-4.596;QD=3.09;ReadPosRankSum=0.185;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr2	97818192	rs202154783	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.849;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=8.728;MLEAC=1;MLEAF=0.500;MQ=46.27;MQRankSum=-4.841;QD=4.00;ReadPosRankSum=-0.450;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr2	97818197	rs200340181	G	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.537;MLEAC=1;MLEAF=0.500;MQ=46.87;MQRankSum=-4.944;QD=3.62;ReadPosRankSum=0.179;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr2	97818236	rs112647905	A	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=5.302;MLEAC=1;MLEAF=0.500;MQ=49.31;MQRankSum=-5.867;QD=3.06;ReadPosRankSum=1.770;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:102,17:0.14:119
chr2	97818260	.	GGC	G	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=3.535;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=-6.104;QD=2.05;ReadPosRankSum=1.476;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:127,17:0.12:144
chr2	97818264	.	G	GTT	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=3.494;MLEAC=1;MLEAF=0.500;MQ=51.01;MQRankSum=-6.082;QD=2.10;ReadPosRankSum=1.254;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:125,17:0.12:142
chr2	97818283	rs112336445	G	C	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=52.58;MQRankSum=-5.124;QD=1.52;ReadPosRankSum=0.331;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:118,11:0.09:129
chr2	97818348	rs58438329	A	G	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:18,81:0.82:99
chr2	97823971	rs13011421	T	C	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:55,97:0.64:152
chr2	97828929	rs79735975	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:10,51:0.84:61
chr2	97828982	rs62153884	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr2	97829003	rs145086333	CAAAAATAA	C	1555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=15.798;MLEAC=1;MLEAF=0.500;MQ=47.49;MQRankSum=-4.489;QD=15.71;ReadPosRankSum=3.846;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:57,42:0.42:99
chr2	97829029	rs146874874	GT	AG	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=19.395;JOINED;MLEAC=1;MLEAF=0.500;MQ=46.92;MQRankSum=-5.437;QD=14.27;ReadPosRankSum=3.947;SOR=1.376;set=HC	GT:AD:AF:DP	0/1:68,44:0.39:112
chr2	97829119	.	ATG	A	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.749;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=27.288;MLEAC=1;MLEAF=0.500;MQ=51.95;MQRankSum=-4.591;QD=2.35;ReadPosRankSum=1.456;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chr2	97829125	.	ACTT	A	180.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.301;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=24.153;MLEAC=1;MLEAF=0.500;MQ=52.09;MQRankSum=-4.624;QD=2.38;ReadPosRankSum=1.761;SOR=4.804;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr2	97829126	.	CTTT	C	948	.	AC=1;AF=0.500;AN=2;BRF=0.46;FR=0.5000;HP=10;HapScore=1;MGOF=23;MMLQ=28;MQ=41.91;NF=1;NR=15;PP=948;QD=60.0;SC=GTAATGCATACTTTTTTTTTT;SbPval=0.88;Source=Platypus;TC=54;TCF=7;TCR=47;TR=16;WE=97829136;WS=97829110;set=Platypus	GT:AD:AF:DP	1/0:38,16:0.30:54
chr2	97829129	.	T	TAC	180.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.747;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=24.097;MLEAC=1;MLEAF=0.500;MQ=52.16;MQRankSum=-4.641;QD=2.35;ReadPosRankSum=2.070;SOR=4.747;set=HC	GT:AD:AF:DP	0/1:67,10:0.13:77
chr2	97829144	rs62153885	T	G	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.908;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=17.177;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=-4.655;QD=2.65;ReadPosRankSum=1.974;SOR=3.950;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr2	97829204	rs75770158	C	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-3.765;QD=1.94;ReadPosRankSum=-2.510;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr2	97833193	rs75122869	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	97833215	rs146634230	T	C	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.929;MLEAC=1;MLEAF=0.500;MQ=47.53;MQRankSum=-4.791;QD=21.64;ReadPosRankSum=-1.177;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	97833215	.	TCC	CCT	594	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=15;MQ=42.36;NF=15;NR=7;PP=594;QD=29.4303579483;SC=AGAAGTACTTTCCTGTGTTAG;SbPval=0.51;Source=Platypus;TC=43;TCF=30;TCR=13;TR=22;WE=97833225;WS=97833205;set=Platypus	GT:AD:AF:DP	1/0:21,22:0.51:43
chr2	97833217	rs150423357	C	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.929;MLEAC=1;MLEAF=0.500;MQ=47.53;MQRankSum=-4.791;QD=21.64;ReadPosRankSum=-0.960;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	97833342	rs5008284	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=8.009;MLEAC=1;MLEAF=0.500;MQ=47.04;MQRankSum=-6.095;QD=2.54;ReadPosRankSum=-2.806;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:90,23:0.20:113
chr2	97833361	rs1358633	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=-6.368;QD=0.32;ReadPosRankSum=-3.442;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:118,17:0.13:135
chr2	97833466	rs112133169	C	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.513;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=60.111;MLEAC=1;MLEAF=0.500;MQ=45.38;MQRankSum=-7.785;QD=4.03;ReadPosRankSum=-1.464;SOR=4.371;set=HC	GT:AD:AF:DP	0/1:141,41:0.23:182
chr2	97833553	rs76811792	C	T	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.716;MLEAC=1;MLEAF=0.500;MQ=50.87;MQRankSum=-1.280;QD=12.59;ReadPosRankSum=0.188;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:46,65:0.59:111
chr2	97833567	rs76160111	A	G	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.71;MQRankSum=-1.636;QD=23.65;ReadPosRankSum=-0.294;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:44,68:0.61:112
chr2	97833569	rs78400826	C	T	2648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.80;MQRankSum=-1.541;QD=23.86;ReadPosRankSum=-0.138;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:44,67:0.60:111
chr2	97833583	rs72945197	C	T	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.52;MQRankSum=-1.449;QD=13.10;ReadPosRankSum=0.539;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:45,64:0.59:109
chr2	97851069	rs62154801	A	G	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,96:0.68:142
chr2	97877292	rs10171441	C	A	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:18,80:0.82:98
chr2	97877399	rs10186233	T	C	8950.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:103,396:0.79:499
chr2	97877440	rs35711845	T	C	4256.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:344,232:0.40:576
chr2	97877478	rs10194525	G	A	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:349,186:0.35:535
chr2	98192743	.	A	AAC	95.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	98192749	rs55777246	T	C	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	98196849	rs34131105	G	A	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.604;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-3.171;QD=24.85;ReadPosRankSum=-0.695;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr2	98196859	rs35904593	T	G	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-3.933;QD=23.20;ReadPosRankSum=-0.545;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:23,41:0.64:64
chr2	98205924	rs74177639	C	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,34:0.43:79
chr2	98206188	rs1868445	C	G	4147.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;MQ=59.89;set=Intersection	GT:AD:AF:DP	0/1:83,174:0.68:257
chr2	98273290	rs11547232	C	T	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:54,93:0.63:147
chr2	98273661	rs2290124	A	G	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr2	98274527	rs1042705	G	C	8139.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:155,347:0.69:502
chr2	98276014	rs150112418	CCCTCACCTGCCCTGACCAGAA	C	1412.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr2	98376989	rs3214760	TA	T	347.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	98392302	rs17489259	G	A	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:36,91:0.72:127
chr2	98418812	rs11340992	CA	C	578.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	98449796	rs6721250	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	98451036	rs34454073	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=1.611;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	98460441	rs66477711	TAG	T	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	98460742	rs12712162	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	98475979	rs6707750	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	98525107	rs1317178	T	C	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:32,78:0.71:110
chr2	98544058	rs6707719	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,34:0.81:42
chr2	98611833	rs2279825	T	C	383.82	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr2	98611994	rs2279824	G	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr2	98709684	rs298917	T	C	5483.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:158,262:0.62:420
chr2	98795792	rs4851884	C	G	11298.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr2	98795873	rs11419620	T	TG	10710.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr2	98797744	rs4851890	C	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	98811075	rs7579916	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	98833186	rs116350979	T	C	1250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.204;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:114,69:0.38:183
chr2	98833445	.	A	ACC	259.73	.	AC=1;AF=0.500;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr2	98833449	rs62156666	G	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr2	98844575	rs7606220	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.242;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.337;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr2	98844674	rs7601049	C	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.263;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:181,52:0.22:233
chr2	98853173	rs11889349	G	A	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.017;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:220,96:0.30:316
chr2	98862097	rs4851121	A	G	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	98872662	rs113487988	C	CT	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.647;QD=12.22;ReadPosRankSum=0.771;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr2	98887116	rs4851955	G	C	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:22,67:0.75:89
chr2	98907089	.	G	GT	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.641;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.627;QD=1.50;ReadPosRankSum=0.966;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr2	98928494	rs7587534	G	A	8686.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	98928929	rs1466944	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr2	98948224	rs13427344	C	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,62:0.61:101
chr2	98949621	rs17428990	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	98950659	rs10181000	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.796;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr2	98994414	rs937725	T	C	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr2	98994641	rs4146045	G	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:47,82:0.64:129
chr2	99156296	rs6734569	G	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	99168953	rs1181562	T	C	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	99172243	rs41486345	C	T	11463.77	.	AC=1;AF=0.500;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	0/1:342,529:0.61:871
chr2	99219111	.	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=4.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.773;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	99234581	rs35335182	C	CATT	550.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,31:0.26:120
chr2	99234586	.	AT	A,ATT	826.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=134;MQ=60.08;set=Intersection	GT:AF:DP	0/1:0.56:124
chr2	99272057	rs3754870	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=0.114;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	99274653	rs2271670	T	C	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-0.618;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:49,25:0.34:74
chr2	99721804	.	CT	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.355;QD=3.72;ReadPosRankSum=0.565;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr2	99725479	rs11396964	A	AT	923.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr2	99726043	rs6733624	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	99743419	rs13008171	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	99766927	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.681;QD=0.87;ReadPosRankSum=-0.256;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:46,17:0.27:63
chr2	99771533	rs2516834	C	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:156,75:0.32:231
chr2	99771590	rs2632260	G	T	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr2	99778985	rs2632277	T	C	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:261,129:0.33:390
chr2	99779131	rs2516835	T	C	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:317,143:0.31:460
chr2	99779655	rs2632276	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.08;ReadPosRankSum=-0.623;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	99802820	rs6757661	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.041;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chr2	99804642	rs10865030	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-1.385;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr2	99811894	rs7605843	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:62,24:0.28:86
chr2	99812070	rs1044575	G	A	2267.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:177,123:0.41:300
chr2	99859954	.	C	CAGATAGAT,CAGAT	454.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=71;set=Intersection	GT:AF:DP	0/1:0.60:25
chr2	99870872	rs138844118	AAGATAGTATTCTCACAGGCTC	A	212.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	99918077	rs74177686	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.88;MQRankSum=-0.098;QD=7.48;ReadPosRankSum=-0.256;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	99923088	rs13003899	T	C	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	99936265	.	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=2.772;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr2	99938942	rs12464785	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr2	99939031	rs17022564	A	G	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.652;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:205,100:0.33:305
chr2	99976564	rs3828162	A	G	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=-1.235;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr2	99978048	rs12233086	G	A	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.508;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:126,44:0.26:170
chr2	99988116	.	CAGA	C	2627.73	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr2	99992822	rs7558074	A	C	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr2	99993176	rs10179343	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	99995458	rs200706463	AT	A	716.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=2.910;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:64,63:0.50:127
chr2	99995804	rs1376443	T	C	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr2	99998561	rs2290256	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	99999517	rs146864457	T	TTG	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	100006620	rs10187843	G	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	100006890	rs35228031	G	GT	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=12.015;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=0.000;QD=2.12;ReadPosRankSum=1.060;SOR=2.084;set=HC	GT:AD:AF:DP	0/1:55,28:0.34:83
chr2	100006904	rs58344028	T	TTA	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.130;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.899;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr2	100010685	rs2242036	A	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr2	100017906	.	C	CAA	730.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=4.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.14;ReadPosRankSum=1.502;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr2	100019496	rs2305354	A	G	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	100019612	rs3087397	TG	T	204.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr2	100021184	rs2290261	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:101,68:0.40:169
chr2	100022270	rs1053544	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	100022617	rs13394927	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr2	100022772	rs717454	T	C	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:140,68:0.33:208
chr2	100050740	rs13409359	A	C	3060.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:77,142:0.65:219
chr2	100055033	rs10175852	C	A	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr2	100055158	rs3087399	T	C	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:49,102:0.68:151
chr2	100055506	rs3087386	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	100081317	rs28369944	T	C	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.046;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:125,61:0.33:186
chr2	100081323	rs28369943	C	T	6609.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.40;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	100081561	rs28369942	A	AAAGTC	1755.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	100171382	rs11893480	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr2	100181858	rs115257107	G	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr2	100218080	rs4851214	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr2	100288931	rs4851222	G	A	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	100343557	rs4851223	C	T	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	100454072	rs5832886	C	CT	8817.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr2	100721050	.	A	G	37	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5064;HP=8;HapScore=2;MGOF=0;MMLQ=23;MQ=56.57;NF=0;NR=3;PP=37;QD=23.9237375157;SC=CCCACCGCCCACCCCCAGGTC;SbPval=1.0;Source=Platypus;TC=6;TCF=2;TCR=4;TR=3;WE=100721058;WS=100721040;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	100915629	rs4851286	T	C	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	100915772	rs4851287	A	G	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	100916051	rs2033749	T	C	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	100916306	rs2033748	A	G	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	100916315	rs11123823	A	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	100917109	rs13006224	C	T	10830.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr2	100925803	rs10195793	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	100938226	rs74177694	G	C	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	100938241	rs192225848	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-1.604;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	100938328	rs74177695	T	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	100938481	rs74177696	C	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	100986964	rs1437971	A	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	101009600	rs1530030	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	101010082	rs3748930	G	C	8391.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:1,323:1.00:324
chr2	101011877	rs2241810	T	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	101014247	rs4149517	C	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	101014363	rs2241809	C	T	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr2	101022886	rs4149512	C	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	101031334	rs189038328	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr2	101031561	rs3828193	G	T	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	101086894	rs13385681	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:67,115:0.63:182
chr2	101086966	rs13411940	C	T	6479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.701;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:154,294:0.66:448
chr2	101087104	rs13414632	C	T	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:65,108:0.62:173
chr2	101087191	rs13388529	G	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr2	101093556	rs6726587	T	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr2	101095733	rs7561811	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	101096802	rs7565675	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,35:0.52:67
chr2	101096834	rs13428749	C	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,60:0.59:101
chr2	101096860	rs7568519	T	C	1514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=0.291;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:55,74:0.57:129
chr2	101096903	rs13393776	T	C	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-1.858;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:57,89:0.61:146
chr2	101096960	rs1519654	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr2	101126124	rs1829479	T	A	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	101179341	rs2970988	AG	GA	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;JOINED;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr2	101186088	rs1052117	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr2	101188373	rs138885839	C	CCTGTGTATGAGTGA	1919.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr2	101192883	rs4618078	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.709;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-2.428;QD=0.19;ReadPosRankSum=2.292;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:172,26:0.13:198
chr2	101437561	rs6542989	G	A	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.179;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:313,123:0.28:436
chr2	101437601	rs6542990	C	G	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-1.943;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:342,135:0.28:477
chr2	101437762	rs13390078	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,20:0.26:76
chr2	101520972	rs5832941	A	AT	316.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	101520985	rs10168430	A	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;MQ=60.83;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	101521173	rs57350721	ATT	A,AT	656.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.341;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.000;QD=11.32;ReadPosRankSum=1.782;SOR=0.421;set=HC	GT:AD:AF:DP	1/2:11,28,19:0.48,0.33:58
chr2	101541798	rs356651	C	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=1.674;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr2	101564628	rs10207725	A	G	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	101566070	rs3739005	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	101580575	rs41280595	G	A	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr2	101581246	rs7581886	C	T	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr2	101581294	.	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.700;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:179,40:0.18:219
chr2	101581976	rs4851392	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	101591304	rs2305160	A	G	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr2	101594191	rs11541353	C	T	18174.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr2	101598677	rs2278727	C	T	3660.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:304,195:0.39:499
chr2	101612051	rs2305158	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:91,51:0.36:142
chr2	101619283	rs2278724	C	G	12021.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr2	101619321	rs2278723	T	C	14167.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr2	101619377	rs72821045	C	T	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:93,248:0.73:341
chr2	101620856	rs34386800	TA	T	998.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.227;QD=4.78;ReadPosRankSum=2.522;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:122,87:0.42:209
chr2	101622696	rs34763346	T	TG	927.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:81,40:0.33:121
chr2	101624471	rs746924	T	C	9532.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:2,349:0.99:351
chr2	101627343	rs35511736	CA	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.512;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:43,24:0.36:67
chr2	101627852	rs1062059	C	T	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	101627925	rs1062062	C	T	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr2	101635369	rs56291532	G	A	4376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=0.115;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:95,196:0.67:291
chr2	101638828	rs34685616	C	T	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:90,162:0.64:252
chr2	101638888	rs3739014	A	G	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	101646144	rs3739015	G	A	2484.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:257,137:0.35:394
chr2	101656726	rs2289953	T	C	8741.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr2	101869588	rs2272320	G	T	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-0.318;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:164,97:0.37:261
chr2	101870073	rs874272	T	C	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:49,75:0.60:124
chr2	101874442	rs6757365	C	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=1.210;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:118,34:0.22:152
chr2	101881549	rs3768995	A	T	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=3.022;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:124,46:0.27:170
chr2	101883027	rs3736586	T	C	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr2	101883046	rs1660694	A	G	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr2	101889306	rs750783	A	G	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.959;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.513;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr2	101898412	rs13151	G	C	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	101911292	rs17190139	G	A	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=1.481;SOR=1.424;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr2	101911385	rs3828194	A	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:195,99:0.34:294
chr2	101925026	rs11123868	T	C	5075.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:154,240:0.61:394
chr2	101967346	rs6543032	C	T	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:91,171:0.65:262
chr2	102000210	rs11694978	G	A	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr2	102003633	rs11554173	G	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.603;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.919;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr2	102003962	rs116287156	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr2	102018878	rs11123876	G	A	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr2	102026879	.	A	ACACT	130.73	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	102029273	rs11689348	T	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr2	102029302	rs141041589	G	A	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr2	102029548	rs1554070	G	A	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr2	102031176	rs4851434	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	102031489	rs4851435	C	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	102035192	rs6709913	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	102038849	rs4851436	T	A	14784.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr2	102045607	rs17025577	C	T	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:128,71:0.36:199
chr2	102066878	rs4851448	A	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr2	102067083	rs7585228	T	C	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:56,92:0.62:148
chr2	102068715	rs11123884	C	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr2	102068872	rs4851449	T	A	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=0.296;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:59,105:0.64:164
chr2	102069002	rs4851450	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	102083393	rs11680478	T	C	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	102314437	rs13430711	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	102314633	.	G	GGGCAGCC	2401.73	.	AC=2;AF=1.00;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	102315057	rs1567385	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	102459268	rs17801985	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	102477453	rs56378209	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	102483883	rs17745869	T	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr2	102501891	rs57584884	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	102503486	.	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=16.406;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=1.711;QD=2.99;ReadPosRankSum=-0.133;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	102632582	rs3819369	T	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr2	102785158	rs3213735	G	T	474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.218;QD=5.79;ReadPosRankSum=0.609;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:44,38:0.46:82
chr2	102788409	rs2041747	G	A	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	102792760	rs3917318	A	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	102817954	rs2302623	A	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr2	102828378	rs138145179	A	ATT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.606;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	102957628	rs201528268	C	CT	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.167;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr2	102957716	rs1420101	C	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.119;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr2	102979028	rs2287037	C	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:84,59:0.41:143
chr2	102979238	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=7.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.582;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr2	102984279	rs1420098	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:86,51:0.37:137
chr2	103001402	rs1035130	C	T	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=0.856;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:158,84:0.35:242
chr2	103003265	rs2241116	C	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr2	103006387	rs4851570	A	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.032;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.070;SOR=1.159;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr2	103039584	rs3817465	A	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr2	103040247	rs11377261	T	TG	1076.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.227;MLEAC=1;MLEAF=0.500;MQ=62.99;MQRankSum=9.433;QD=10.88;ReadPosRankSum=-0.469;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:69,30:0.30:99
chr2	103040249	rs2272129	C	T	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.209;MLEAC=1;MLEAF=0.500;MQ=62.93;MQRankSum=9.099;QD=10.75;ReadPosRankSum=-0.778;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:69,32:0.32:101
chr2	103040249	.	CT	GT	1348	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=25;MQ=62.67;NF=21,23;NR=1,1;PP=1319,1348;QD=62.856625476;SC=TTTCCATGTGCTTTGTTTATT;SbPval=0.98;Source=Platypus;TC=83;TCF=68;TCR=15;TR=22,24;WE=103040257;WS=103040239;set=Platypus	GT:AD:AF:DP	0/1:70,24:0.26:94
chr2	103040249	.	CT	CTT	1348	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=25;MQ=62.67;NF=21,23;NR=1,1;PP=1319,1348;QD=62.856625476;SC=TTTCCATGTGCTTTGTTTATT;SbPval=0.98;Source=Platypus;TC=83;TCF=68;TCR=15;TR=22,24;WE=103040257;WS=103040239;set=Platypus	GT:AD:AF:DP	0/1:61,22:0.27:83
chr2	103040945	rs887972	G	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr2	103059613	rs1558651	A	G	5832.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	103090127	rs17027255	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr2	103095404	rs11692304	G	A	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:307,168:0.35:475
chr2	103120232	rs2075188	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:156,85:0.35:241
chr2	103120311	rs2075187	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr2	103125457	rs6739301	A	G	3662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.819;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:300,112:0.27:412
chr2	103125466	rs6742381	T	C	3641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.365;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:293,111:0.27:404
chr2	103128866	rs4851609	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr2	103136309	rs1403550	T	C	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.358;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:117,70:0.37:187
chr2	103136446	rs1403551	T	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr2	103141447	rs2015478	A	G	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:99,65:0.40:164
chr2	103141583	rs61731289	G	A	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:46,88:0.66:134
chr2	103141651	rs1024798	G	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr2	103149100	rs1014286	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:58,20:0.26:78
chr2	103149162	rs2008159	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr2	103149182	rs2008157	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr2	103300506	rs6757258	A	G	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	103335754	rs72828057	T	C	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	103343234	rs3796061	G	C	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	103343275	rs34958116	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=2.759;QD=1.61;ReadPosRankSum=0.389;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr2	103375056	rs2732838	T	G	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	103378857	rs2540298	C	G	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	103414593	rs140870577	CACTA	C	931.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	103431404	rs887987	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	105471878	.	CGCG	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.14;ReadPosRankSum=-2.278;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr2	105665808	rs11538197	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	105665921	rs3832070	GA	G	71	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	105665941	rs3832069	GTT	G	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	105705507	rs11538198	C	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	105706584	rs147318136	AAAAAC	A	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	105707766	rs12620254	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	105709023	rs6543282	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	105713697	rs15567	A	G	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	105713868	rs10206662	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.02;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	105713877	rs57214748	T	C	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	105716266	rs9066	A	G	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	106013216	rs11891016	T	C	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	106013248	rs11884297	C	T	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	106471393	rs6543345	T	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	106471825	rs3832068	C	CA	95.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.99;ReadPosRankSum=0.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr2	106682226	rs4271786	T	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	106682235	rs4266035	C	G	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	106682365	rs4477942	T	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	106690557	rs41280611	G	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	106710668	rs11268588	C	CGCAGGAAGGAAGTGCCACCTT	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=48.99;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	106713480	rs17032319	C	G	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	106715342	rs3820891	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	106717274	rs3739136	A	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	106717656	rs10177888	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	106742139	rs4851925	C	T	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	106742177	rs3739137	T	A	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	106780015	rs3910716	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	106780055	rs10631203	C	CTG	1226.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	106782398	rs4851115	C	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	106810727	rs7604916	A	G	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr2	106992845	rs56959583	A	G	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.30;QD=30.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	106992963	rs11464214	A	AG	3949.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	107007576	rs60043380	A	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	107107511	rs11124115	C	T	4897.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	107107567	rs2228021	G	C	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	107107694	rs6543414	A	G	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	107107765	rs6543415	C	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	107118896	rs4340514	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	107119136	rs4365459	G	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	107121040	rs146000492	T	TA	3368.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:6,152:0.96:158
chr2	107423128	rs3796114	C	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	107429570	.	G	GTT	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.447;QD=4.76;ReadPosRankSum=0.066;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	107429801	rs6739022	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	107446396	rs877693	T	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	107446430	rs935565	T	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	108618540	rs3731683	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	108915008	.	AT	A	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=2.582;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	109006665	rs13021399	T	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	109065858	rs2460947	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	109065919	rs3820957	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	109067337	rs12468089	C	T	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	109067359	rs13397470	GT	AA	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	109069008	rs2683797	T	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	109085373	rs10179602	A	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	109088343	rs146256742	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	109089404	rs2243888	C	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	109092121	rs3213886	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	109098994	rs3213887	T	C	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	109099477	rs2577613	A	G	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	109099572	rs2718698	C	G	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	109103108	rs3754925	C	T	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	109106381	rs12104502	A	G	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	109123997	.	T	TG	656.73	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	109277239	rs12472770	C	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	109292280	rs7584953	T	C	8709.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	109335951	rs138272224	G	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=-2.450;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	109389463	rs826580	G	A	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	109393522	rs58272304	TG	T	2279.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	109411248	rs111234702	GAATAT	G	1580.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	109429146	rs975597	T	A	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	109490104	rs6737810	A	G	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	109513321	rs7607563	C	A	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	109513654	rs12623957	G	A	12485.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr2	109513786	rs3789738	A	T	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.219;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	109522720	rs260639	G	A	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=1.334;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	109524517	rs142724949	G	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	109526969	rs260632	G	A	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	109527087	rs260631	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	109527373	rs260630	A	G	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	109539653	rs260643	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	109745782	rs200435574	TGGCCGGTCCCCGCCACGCA	T	4755.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	109758196	rs13023759	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	109929958	rs6748434	A	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	110053248	rs7369523	C	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	110372192	rs6594048	A	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	110552161	.	GGGC	G	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=0.842;QD=16.55;ReadPosRankSum=0.126;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	110855123	rs2004273	G	T	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr2	110873470	.	GA	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.278;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr2	110919041	rs3817140	A	G	210.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	110922064	rs71793890	C	CA	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.514;SOR=0.201;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr2	111058854	rs190352639	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.62;QD=24.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	111397237	rs112515450	CT	C	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.733;QD=1.82;ReadPosRankSum=-0.642;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr2	111406724	rs34802999	T	TCA	533.19	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr2	111721142	.	ATG	A	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.133;QD=3.27;ReadPosRankSum=0.850;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr2	111753449	rs3761707	G	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	111789092	rs3789090	G	A	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	111907691	rs724710	T	C	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	111909247	rs3789068	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	112536264	rs76115652	G	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.21;QD=30.75;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	112582523	rs74602614	G	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	112590989	rs3761697	A	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	112605302	rs4848197	C	T	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.11;QD=31.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	112605465	rs4848800	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	112616040	.	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=8.776;MLEAC=1;MLEAF=0.500;MQ=45.45;MQRankSum=1.374;QD=4.28;ReadPosRankSum=-0.018;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr2	112616059	rs183990854	C	T	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.773;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=10.105;MLEAC=1;MLEAF=0.500;MQ=42.59;MQRankSum=-2.121;QD=18.63;ReadPosRankSum=2.483;SOR=2.704;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr2	112621498	rs70962959	GA	G	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=0.598;QD=10.11;ReadPosRankSum=1.063;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr2	112625575	rs6742515	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	112630412	rs141064868	A	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	112641111	.	CA	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.097;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:185,49:0.21:234
chr2	112641256	rs2037198	GA	AG	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	112641283	rs12233011	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	112813391	rs9308665	C	G	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	112821880	rs60348850	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	112832684	rs6542026	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	112843565	rs35496465	AT	A	1800.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	112854584	rs4849005	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	112856165	rs4849007	C	A	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	112865517	rs7562848	G	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	112896367	.	T	C	690	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=2;HapScore=1;MGOF=56;MMLQ=23;MQ=57.47;NF=2;NR=21;PP=690;QD=31.5117918499;SC=TCCAGGCCAGTGTCCCTCCCG;SbPval=0.62;Source=Platypus;TC=33;TCF=3;TCR=30;TR=23;WE=112896375;WS=112896357;set=Platypus	GT:AD:AF:DP	1/1:10,23:0.70:33
chr2	112933521	rs12711735	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	112939548	rs4849050	T	C	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	112940578	rs3811643	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	112945188	rs4848281	T	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	112995810	rs2254860	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	112995893	rs112280995	C	T	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	113074775	rs5833444	C	CT	429.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=0.236;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr2	113079576	rs4507112	C	A	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	113082250	rs59100751	CT	C	2923.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	113089267	rs7601200	T	C	7793.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	113090047	rs4578863	T	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	113190893	.	GGGCCGGGTCGAGGCCGCCGCCGCCC	G	548.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.69;QD=42.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	113300330	rs4849071	G	A	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	113305150	rs11123139	G	C	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	113308516	rs2304555	T	A	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	113308622	rs3816140	C	T	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	113309473	rs1545133	C	T	6333.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr2	113310197	rs11351307	CT	C	673.27	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:7,46:0.87:53
chr2	113315735	rs57858974	CT	C	117.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	113321900	rs41280572	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	113326281	rs6746874	C	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	113326502	rs13010814	C	T	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	113344047	rs752992	T	C	14227.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr2	113346413	rs3748024	C	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	113346512	rs1047652	A	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	113479614	rs13386452	G	A	10331.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr2	113479745	rs34781106	AC	A	10329.73	.	AC=2;AF=1.00;AN=2;DB;DP=356;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr2	113480938	.	G	GCA	966.73	.	AC=1;AF=0.500;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr2	113481439	rs13384583	T	A	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	113481547	rs2063919	A	G	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	113482779	rs4849116	A	C	13017.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr2	113484319	rs2138604	G	A	5488.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	113484353	rs2138605	A	G	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	113484441	rs2138606	T	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	113513825	rs6731822	T	C	10010.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr2	113514883	rs11311327	AT	A	259.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	113532885	rs3783550	G	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	113535395	rs2071376	G	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	113535770	.	G	GGTGTGT	284.76	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.59;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	113540205	rs1609682	G	T	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr2	113588755	rs1143640	CAA	C	960.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	113588793	rs1143639	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	113590390	rs1143634	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	113763463	rs2305152	A	C	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	113763575	rs895497	A	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	113783570	rs13030063	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	113783909	rs6744874	A	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	113785020	rs12711747	A	G	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	113785202	rs11673918	G	A	6785.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	113785727	rs1562304	A	G	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	113786833	rs3948121	C	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	113789316	rs2305150	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	113830201	rs3811051	T	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	113890304	rs315952	T	C	9858.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr2	113940681	rs3748914	T	C	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	113940839	rs4849167	G	C	8968.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr2	113942903	rs1975535	A	C	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	113943470	rs2241976	A	G	7512.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr2	113953401	rs923693	A	G	14463.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,546:1.00:548
chr2	113953657	rs4849169	A	C	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	113953952	rs4848318	T	C	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	113953973	rs71385890	A	AT	1250.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	113953974	rs10579377	GACA	G	1250.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	113955074	rs902695	G	A	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	113956371	rs2276561	G	C	7837.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr2	113956821	rs2305133	C	G	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	113977862	rs4849175	T	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	113994417	rs1110839	G	T	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	114000458	rs902691	C	A	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	114480548	rs17683255	A	G	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	114480812	rs3835109	A	AAAC	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	114493260	rs12624301	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	114493509	rs142249018	CT	C	1244.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	114501112	rs3748906	C	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	114503630	rs58673639	T	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	114513787	rs4538208	C	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	114513901	rs4321376	C	T	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr2	115919677	rs7557011	CT	GC	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	116066984	rs975453	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	116099725	rs843403	A	T	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	116497479	rs1550854	A	G	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	116497528	rs1550853	A	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	116510794	.	C	G	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.053;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:45,45:0.50:90
chr2	116510817	rs2053724	G	C	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	116520315	.	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	116525960	rs1446495	G	A	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	116548526	rs6735355	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	116548820	rs3738879	C	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	116593675	rs10549769	ATG	A	986.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.986;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.454;QD=24.67;ReadPosRankSum=-1.166;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:5,35:0.88:40
chr2	116593695	rs34212292	GAT	G	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.350;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.504;QD=4.01;ReadPosRankSum=-1.524;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr2	116594221	rs736335	G	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	116598546	rs272011	G	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	116599659	rs272010	A	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	116599927	rs272009	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	118575215	rs1052637	C	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	118579145	rs10515923	G	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	118583249	rs17047457	G	A	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr2	118688754	rs971754	T	C	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	118694477	rs55918624	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	118701764	rs3732320	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	118704478	rs7580124	T	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr2	118704503	rs2303329	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	118705570	rs10186396	A	G	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	118706879	rs1035598	A	G	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	118732975	rs6722547	T	C	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	118735395	rs889899	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	118753148	rs10633675	A	ATC	2174.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	118766024	rs10864966	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	118771663	rs12477588	A	G	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	118854094	rs58018715	A	AT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.773;QD=1.17;ReadPosRankSum=-1.685;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr2	119700125	rs112839786	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	119734894	rs66466905	AAG	A	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.678;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.702;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:110,22:0.17:132
chr2	119739127	.	C	CT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.044;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr2	119748135	rs3835093	TC	T	9578.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	119748143	rs116412702	C	G	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=43.05;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr2	119749477	rs2304708	T	G	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	119749858	rs3765035	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	119751867	rs11678719	C	T	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	119915132	rs11308896	CG	C	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	119915249	rs7556873	T	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	120003642	rs838083	C	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	120005838	rs200190146	CCT	C	580.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=13.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-0.234;SOR=0.146;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr2	120005839	rs5833785	CT	C	2266.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:45,98:0.69:143
chr2	120005867	rs4592854	G	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	120059895	rs16744	G	GGAAA	218.80	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	120059988	rs1890	T	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	120060082	rs1052500	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	120078778	rs1132267	T	C	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	120125029	rs2084202	A	G	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	120125053	rs3731608	C	G	8335.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	120125058	rs3731607	C	T	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	120125363	rs3091405	C	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	120125384	rs3091406	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	120125689	rs8192503	A	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	120125910	rs2276596	C	A	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	120125936	rs2244135	T	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	120128482	rs956309	C	T	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	120187344	rs11123523	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	120189404	rs4340531	A	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	120189433	rs4599130	G	C	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	120194651	rs3217464	A	AGTGTGC	15317.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr2	120197670	rs1042656	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	120199140	rs1126839	A	G	9573.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr2	120209689	rs2587692	A	G	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr2	120221585	rs2253870	G	A	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	120221984	rs2579647	A	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	120230998	rs2579641	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	120231165	rs2587701	T	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	120231303	rs2587702	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	120344873	rs6726971	T	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	120362407	rs1568540	C	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	120362897	rs1521914	T	A	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	120366057	rs11398750	G	GT	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.126;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.564;QD=13.12;ReadPosRankSum=-1.538;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:10,44:0.81:54
chr2	120369300	rs10864986	T	C	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	120385094	rs71966516	GATATAT	G	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.23;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	120387637	rs12711931	G	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	120388412	rs2272058	G	A	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	120404629	rs11349518	AT	A	2184.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.725;QD=14.37;ReadPosRankSum=-0.860;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:13,139:0.91:152
chr2	120409430	rs1521912	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	120409616	rs11686014	G	T	4160.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	120438515	rs11684353	G	C	9082.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr2	120438696	rs939777	A	G	14848.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr2	120620092	.	A	AT	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.072;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-0.256;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:111,40:0.26:151
chr2	120689905	rs2292361	A	G	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	120703842	rs2289581	A	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	120704164	rs3214717	A	AT	1627.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	120704166	rs2289580	G	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;MQ=60.29;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	120714401	.	C	CT	553.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.047;SOR=0.346;set=HC	GT:AD:AF:DP	1/1:6,36:0.86:42
chr2	120718322	rs12618050	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	120718672	rs6737776	T	G	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	120725704	rs10194955	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	120776972	rs3216703	TG	T	644.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	120830815	rs3738970	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	120885310	rs1034489	G	A	7362.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	120889173	rs3738968	G	C	2570.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.07;ReadPosRankSum=-0.930;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:5,117:0.96:122
chr2	120918585	rs12617570	A	C	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	120980428	rs11550347	G	C	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	120997867	.	T	A	831.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=-0.243;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr2	120997869	rs6746072	A	T	878.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.998;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.31;ReadPosRankSum=2.567;SOR=1.698;set=HC	GT:AD:AF:DP	1/1:5,43:0.90:48
chr2	121036385	rs12711939	TT	GA	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	121038290	rs113531689	GA	G	389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.83;ReadPosRankSum=0.062;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr2	121043403	rs4091515	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	121043714	rs140727201	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	121708663	rs10864866	A	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	121713022	rs6718382	C	G	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.45;SOR=2.502;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	121713030	rs12614482	G	A	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	121713041	rs12617878	T	C	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	121726447	rs2592595	G	A	15524.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr2	121729323	rs2677507	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	121729360	rs2592592	T	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	121729490	rs2592591	C	T	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr2	121729686	rs2592590	T	C	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	121730138	rs3106962	C	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	121740190	rs1968619	C	T	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	121740194	rs1530580	T	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.80;SOR=2.084;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	121740505	rs280196	C	T	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	121744225	rs2276553	A	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	121746956	rs3738880	G	T	8812.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr2	121747406	rs12711538	G	A	10959.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr2	121747429	rs10167980	A	G	9852.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr2	121981950	rs11890430	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	121995151	rs2260394	T	C	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	121997120	rs41278936	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	122004596	rs2252862	C	G	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	122520713	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=-0.000;DP=48;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.40;ReadPosRankSum=-1.531;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	125192068	rs1425745	T	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	125232609	rs4411700	G	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	125405302	rs924802	C	T	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	125669260	rs2602655	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	127447763	rs6709803	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr2	127453664	rs1050967	A	C	2185.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:231,126:0.35:357
chr2	127656810	rs938017	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:257,111:0.30:368
chr2	127657221	rs3795873	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	127808226	rs2071270	A	T	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	127808532	rs2043798	G	A	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	127808909	rs6745677	G	A	7745.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	127811042	rs76414720	G	A	7235.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,267:1.00:268
chr2	127811712	rs35339559	G	GCA	2870.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	127816846	rs140171337	CTG	C	913.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;QD=30.46;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	127819777	rs61748157	C	T	12436.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr2	127821085	rs2071268	C	T	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	127821453	rs78935905	G	A	11056.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr2	127821499	rs72481904	T	C	16986.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr2	127825968	rs934826	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	127826632	rs67327804	A	G	6372.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr2	128015367	rs4662718	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	128028792	rs4150499	T	C	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	128029065	rs11345447	GA	G	1499.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr2	128037999	rs4150457	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=1.293;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:78,29:0.27:107
chr2	128050134	rs4150402	T	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	128175875	rs1799809	G	A	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	128176195	rs2854700	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	128177377	rs1158867	C	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	128181028	rs1878844	A	G	5858.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	128183914	rs2069928	G	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	128249441	rs334152	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	128321770	rs2404991	G	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:170,103:0.38:273
chr2	128338519	rs35136538	T	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:98,43:0.30:141
chr2	128339456	rs4662740	G	T	1407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=1.062;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:210,84:0.29:294
chr2	128342547	rs4662741	G	A	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	128345960	rs10928773	T	C	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.983;SOR=1.039;set=HC	GT:AD:AF:DP	0/1:65,14:0.18:79
chr2	128346228	rs11673952	A	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	128350551	rs11678239	G	A	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:96,221:0.70:317
chr2	128350578	rs58867441	T	TG	6340.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	128351346	rs7558838	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr2	128363530	rs11382004	G	GC	2461.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	128367092	rs777432	G	A	9753.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:209,449:0.68:658
chr2	128369752	rs12053039	A	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr2	128369896	rs777435	A	G	9422.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:124,255:0.67:379
chr2	128369917	rs12052654	C	T	9307.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:130,251:0.66:381
chr2	128370200	rs705092	G	A	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr2	128377833	rs2248519	C	G	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:64,93:0.59:157
chr2	128382859	rs2245297	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr2	128385224	rs10164978	C	G	8773.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:144,376:0.72:520
chr2	128386120	rs144295028	TGGGTG	T	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.10;ReadPosRankSum=0.216;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr2	128388790	rs13025791	G	A	4710.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:106,215:0.67:321
chr2	128388862	rs13025959	G	C	4710.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:117,214:0.65:331
chr2	128389343	rs10208043	C	T	4622.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:130,206:0.61:336
chr2	128389422	rs10183797	G	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr2	128393261	rs2255178	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr2	128393289	rs2255177	T	C	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:65,101:0.61:166
chr2	128393390	rs61748909	G	A	6997.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:174,328:0.65:502
chr2	128393800	rs2255161	T	C	10045.77	.	AC=1;AF=0.500;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	0/1:237,466:0.66:703
chr2	128394758	rs2255039	T	C	4121.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:127,187:0.60:314
chr2	128394875	rs59579995	C	CA	17015.73	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:314,435:0.58:749
chr2	128394877	rs56272236	C	T	17024.77	.	AC=1;AF=0.500;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	0/1:316,434:0.58:750
chr2	128394955	rs11686946	A	G	6306.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:218,296:0.58:514
chr2	128396807	rs891515	A	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:32,77:0.71:109
chr2	128400608	rs4662751	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:132,64:0.33:196
chr2	128401091	rs2244507	A	G	4016.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:124,193:0.61:317
chr2	128407499	rs2243805	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	128409337	rs35201354	GC	CA	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,87:0.44:197
chr2	128411934	rs6707277	A	G	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	128411950	rs6707282	A	G	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	128421829	rs79110686	G	A	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,49:0.69:71
chr2	128459111	rs374109151	C	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-0.430;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr2	128477084	rs61730415	G	C	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:96,43:0.31:139
chr2	128480973	rs17599575	G	A	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:145,95:0.40:240
chr2	128495645	rs6754215	G	A	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:261,119:0.31:380
chr2	128522207	rs17534123	C	T	2621.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:343,151:0.31:494
chr2	128522383	rs11557685	T	C	2150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=1.152;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:291,130:0.31:421
chr2	128526579	.	TTAAA	T,TTAAATAAA	858.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=56;set=Intersection	GT:AF:DP	1/2:0.36,0.64:25
chr2	128608271	rs34858843	GA	G	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.582;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr2	128608290	rs6713679	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	128610648	rs10210695	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.369;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:54,31:0.36:85
chr2	128610747	rs10171898	G	A	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr2	128699750	rs2304519	G	C	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:129,70:0.35:199
chr2	128699833	rs1370229	C	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr2	128708063	rs2461463	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	128744580	rs2948068	A	G	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	128753854	rs1550174	T	C	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	128757804	rs10928793	C	T	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	128849114	rs4476299	T	C	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	128854948	.	C	CA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.895;QD=1.09;ReadPosRankSum=0.817;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr2	128860835	rs7355336	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	128870808	rs4662775	T	C	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	128874061	rs10210598	G	A	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	128877837	rs4662593	G	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	128878014	rs4662594	G	A	10774.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr2	128878667	rs6430990	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	128878979	rs10636999	C	CTT	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=2.318;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:14,41:0.75:55
chr2	128879022	rs6430991	G	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	128880899	rs4480941	T	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	128890878	rs34066685	T	TG	7563.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr2	128941511	.	TGA	T	118	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=24;MQ=59.61;NF=0;NR=12;PP=118;QD=10.0833333333;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=1.0;Source=Platypus;TC=35;TCF=2;TCR=33;TR=12;WE=128941520;WS=128941501;set=Platypus	GT:AD:AF:DP	0/1:23,12:0.34:35
chr2	128944492	.	T	G	336.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	129075961	rs61732881	T	C	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-9.574;QD=3.73;ReadPosRankSum=-0.385;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:98,34:0.26:132
chr2	130737578	rs4233601	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr2	130738163	rs144773989	G	A	11235.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.50;QD=27.01;SOR=1.168;set=HC	GT:AD:AF:DP	1/1:0,416:1.00:416
chr2	130750446	rs199529770	C	A	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=46.93;MQRankSum=-1.382;QD=5.10;ReadPosRankSum=-0.408;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:54,26:0.33:80
chr2	130897055	rs28751929	G	A	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	130897218	rs13006246	T	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.305;QD=6.11;ReadPosRankSum=2.234;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:94,52:0.36:146
chr2	130897234	rs3177472	C	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:51,79:0.61:130
chr2	130897620	rs76485676	A	G	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr2	130899791	rs141892357	C	T	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=11.284;MLEAC=1;MLEAF=0.500;MQ=47.12;MQRankSum=2.260;QD=4.89;ReadPosRankSum=-2.000;SOR=0.152;set=HC	GT:AD:AF:DP	0/1:50,24:0.32:74
chr2	130899804	rs138331089	T	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.05;QD=25.67;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	130900188	rs28743163	A	G	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:103,113:0.52:216
chr2	130902067	rs60089935	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:96,70:0.42:166
chr2	130902194	rs60152285	C	T	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=7.373;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=-0.668;QD=12.30;ReadPosRankSum=0.412;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:50,62:0.55:112
chr2	130902549	rs34080706	C	T	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.85;MQRankSum=1.386;QD=21.96;ReadPosRankSum=-1.907;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr2	130910847	rs4511676	G	A	7443.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:178,341:0.66:519
chr2	130914797	rs145477722	T	C	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=45.72;MQRankSum=-3.188;QD=14.70;ReadPosRankSum=-0.606;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	130925088	rs10909567	C	T	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr2	130930819	rs60309319	C	T	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:61,120:0.66:181
chr2	130939288	rs1968676	A	G	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:55,127:0.70:182
chr2	130939348	rs1817097	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:33,87:0.72:120
chr2	130940090	rs1968675	G	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr2	130941034	rs34409208	T	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr2	130941065	rs6737226	T	C	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	130948303	rs12612244	T	C	1515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=62.12;MQRankSum=2.515;QD=21.65;ReadPosRankSum=-0.457;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:23,47:0.67:70
chr2	130948314	rs142246044	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.46;MQRankSum=-1.741;QD=0.76;ReadPosRankSum=1.701;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr2	130948327	rs10175962	G	T	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=0.394;QD=25.59;ReadPosRankSum=1.103;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	130949411	rs10208844	G	T	6009.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr2	130949491	rs60154251	G	A	7899.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:187,368:0.66:555
chr2	130951488	rs2443644	A	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=33.337;MLEAC=1;MLEAF=0.500;MQ=55.63;MQRankSum=-12.237;QD=1.32;ReadPosRankSum=-1.938;SOR=2.660;set=HC	GT:AD:AF:DP	0/1:340,68:0.17:408
chr2	130951548	rs1052319	G	A	6924.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:231,327:0.59:558
chr2	130951566	rs7340193	G	A	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:437,208:0.32:645
chr2	130951581	rs1052312	A	G	3557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=55.39;MQRankSum=-12.700;QD=5.30;ReadPosRankSum=-0.919;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:464,207:0.31:671
chr2	130951584	rs7340507	T	C	7255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.093;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=3.519;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-12.552;QD=10.86;ReadPosRankSum=-0.881;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:460,208:0.31:668
chr2	130952540	rs56151061	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr2	130952613	rs199666109	C	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.263;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=3.920;MLEAC=1;MLEAF=0.500;MQ=50.61;MQRankSum=-6.622;QD=2.72;ReadPosRankSum=-1.147;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:218,67:0.24:285
chr2	130952625	rs3863906	T	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=3.804;MLEAC=1;MLEAF=0.500;MQ=51.13;MQRankSum=-7.004;QD=2.28;ReadPosRankSum=1.578;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:250,69:0.22:319
chr2	130952718	rs3853852	G	A	2593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.681;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=5.243;MLEAC=1;MLEAF=0.500;MQ=54.03;MQRankSum=-13.548;QD=9.10;ReadPosRankSum=-2.396;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:203,82:0.29:285
chr2	130952725	rs3863907	C	T	2641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.657;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=54.90;MQRankSum=-14.182;QD=10.28;ReadPosRankSum=-1.107;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:181,76:0.30:257
chr2	130960023	rs4663031	T	C	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:211,293:0.58:504
chr2	130961729	rs201980950	A	AT	928.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.91;MQRankSum=-1.263;QD=12.38;ReadPosRankSum=-0.841;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:24,51:0.68:75
chr2	130987792	rs12992461	G	A	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr2	130988166	rs201275727	A	G	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=10.815;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-13.671;QD=2.38;ReadPosRankSum=2.000;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:344,94:0.21:438
chr2	130988203	rs79048658	C	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:276,127:0.32:403
chr2	130988216	rs76582648	C	G	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:258,132:0.34:390
chr2	130988276	rs3894178	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:188,92:0.33:280
chr2	130988410	rs202147725	G	A	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.74;MQRankSum=-5.894;QD=4.14;ReadPosRankSum=0.743;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:140,52:0.27:192
chr2	130988421	rs200539608	C	T	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.552;MLEAC=1;MLEAF=0.500;MQ=46.89;MQRankSum=-5.794;QD=4.74;ReadPosRankSum=-0.008;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:147,63:0.30:210
chr2	131332089	.	G	T	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=46.94;MQRankSum=-4.540;QD=4.50;ReadPosRankSum=1.330;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:103,40:0.28:143
chr2	131487673	rs272128	A	C	13381.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr2	131520663	rs1905235	T	C	13888.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr2	131672950	rs12464119	A	G	15035.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr2	131673259	rs77678686	A	G	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:519,226:0.30:745
chr2	131673316	rs3739129	C	T	13497.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:2,501:1.00:503
chr2	131674285	rs3739127	A	G	6921.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr2	131674916	.	C	G	5176.77	.	AC=1;AF=0.500;AN=2;DP=408;set=Intersection	GT:AD:AF:DP	0/1:159,246:0.61:405
chr2	131769237	rs13023338	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr2	131769448	rs35437121	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,49:0.59:83
chr2	131798045	rs200228404	C	A	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:72,47:0.39:119
chr2	131829388	rs75121870	C	A	11336.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:279,550:0.66:829
chr2	131888361	.	AT	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.837;QD=0.40;ReadPosRankSum=-0.659;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:159,38:0.19:197
chr2	131897763	rs146925317	C	G	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr2	132111121	rs11895354	G	A	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.89;QD=46.37;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	132111123	rs370814343	T	C	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.42;QD=45.10;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	132111127	rs13410274	G	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.43;QD=44.16;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	132111166	.	G	GCC	1171.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.70;MQRankSum=-1.280;QD=21.70;ReadPosRankSum=0.435;SOR=0.443;set=HC	GT:AD:AF:DP	1/1:3,51:0.94:54
chr2	132111167	.	G	GCCGCCGCCGC	2712.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.73;QD=41.10;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	132120501	rs146351322	C	CT	6076.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr2	132121350	rs371054387	G	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.96;QD=27.71;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	132200114	rs76882281	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;MQ=55.96;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	132200136	rs73960420	C	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr2	132200256	rs71345553	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:34,81:0.70:115
chr2	132200307	rs71345554	G	A	3871.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:74,174:0.70:248
chr2	132200345	rs71428578	C	T	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:108,230:0.68:338
chr2	132200529	rs71345555	A	G	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:128,117:0.48:245
chr2	132200568	rs62176150	C	T	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:152,123:0.45:275
chr2	132200935	rs71345556	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr2	132200984	rs113036104	G	A	277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=14.040;MLEAC=1;MLEAF=0.500;MQ=45.47;MQRankSum=-5.026;QD=5.45;ReadPosRankSum=-0.703;SOR=3.207;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr2	132200995	rs113518588	C	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=24.318;MLEAC=1;MLEAF=0.500;MQ=45.71;MQRankSum=-5.070;QD=4.67;ReadPosRankSum=0.679;SOR=3.761;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr2	132201288	rs4337511	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:124,70:0.36:194
chr2	132201395	rs146766088	TG	AA	3683.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;JOINED;set=Intersection	GT:AD:AF:DP	0/1:210,104:0.33:314
chr2	132201468	rs4522649	G	A	6005.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:135,269:0.67:404
chr2	132201582	rs1806886	A	G	5771.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:181,261:0.59:442
chr2	132201663	rs1317139	T	C	6028.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:156,276:0.64:432
chr2	132201718	rs2001215	T	C	10802.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:183,282:0.61:465
chr2	132201736	rs2076798	C	G	11140.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:184,297:0.62:481
chr2	132201862	rs1806887	C	G	5116.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:199,243:0.55:442
chr2	132201889	rs2007096	C	A	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:174,195:0.53:369
chr2	132201930	rs13411254	T	C	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:151,144:0.49:295
chr2	132201942	rs72859867	T	C	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:137,128:0.48:265
chr2	132202050	rs13413908	T	C	2331.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:54,102:0.65:156
chr2	132229583	rs16848770	T	C	5508.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:140,245:0.64:385
chr2	132229720	.	T	G	4842.77	.	AC=1;AF=0.500;AN=2;DP=309;set=Intersection	GT:AD:AF:DP	0/1:99,210:0.68:309
chr2	132233606	rs7571932	C	G	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	132233654	rs7571947	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr2	132233676	rs7561542	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:19,75:0.80:94
chr2	132233740	rs2622026	C	A	2503.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:58,114:0.66:172
chr2	132233755	rs7561673	G	A	2693.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:62,124:0.67:186
chr2	132233785	rs7561684	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:64,121:0.65:185
chr2	132235619	rs141836251	T	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:17,46:0.73:63
chr2	132237056	rs7423999	A	C	2867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.195;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=8.435;MLEAC=1;MLEAF=0.500;MQ=50.46;MQRankSum=-8.013;QD=13.99;ReadPosRankSum=-3.502;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:124,81:0.40:205
chr2	132237059	rs7424438	T	G	2836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.854;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=10.463;MLEAC=1;MLEAF=0.500;MQ=50.06;MQRankSum=-9.253;QD=14.77;ReadPosRankSum=-3.700;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:119,73:0.38:192
chr2	132237068	rs142152994	G	C	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.581;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=7.564;MLEAC=1;MLEAF=0.500;MQ=49.22;MQRankSum=-9.531;QD=13.68;ReadPosRankSum=-3.734;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:104,59:0.36:163
chr2	132237150	rs28462272	C	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr2	132238169	rs2463337	A	G	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:162,58:0.26:220
chr2	132238286	rs111626841	C	T	6735.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:196,313:0.61:509
chr2	132238350	rs111758039	C	CAGCA	10263.73	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:116,258:0.69:374
chr2	132240047	rs145801195	T	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr2	132241704	rs11553182	C	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:69,129:0.65:198
chr2	132241731	rs75021268	T	C	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:83,153:0.65:236
chr2	132248330	rs111311763	G	GGC	5872.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:92,143:0.61:235
chr2	132248336	rs59539470	C	G	5806.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:99,151:0.60:250
chr2	132248379	rs12469517	T	G	4265.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:111,193:0.63:304
chr2	132248584	rs10182785	T	C	6729.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	132248632	rs10179938	A	C	4740.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:102,218:0.68:320
chr2	132248876	rs6709245	A	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr2	132249372	rs6706952	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	132249916	rs72262008	AC	A	1060.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr2	132258153	.	C	CACCTGCTACCTACCTGCTACCTGCTACCTG	2659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.729;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=21.236;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-2.824;QD=18.86;ReadPosRankSum=3.247;SOR=2.398;set=HC	GT:AD:AF:DP	0/1:74,67:0.48:141
chr2	132266142	rs12691988	G	C	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:151,225:0.60:376
chr2	132266246	rs7591223	T	C	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:62,127:0.67:189
chr2	132273988	rs199565961	GC	G	1200.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:90,36:0.29:126
chr2	132273994	rs372388255	T	G	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=2.155;QD=9.92;ReadPosRankSum=-0.505;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr2	132274370	rs113719235	C	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:19,50:0.72:69
chr2	132275343	rs12691998	G	T	11667.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:221,534:0.71:755
chr2	132275396	rs2277878	T	C	12304.77	.	AC=1;AF=0.500;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	0/1:232,572:0.71:804
chr2	132277962	rs7560296	T	C	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:74,98:0.57:172
chr2	132285564	.	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.685;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.500;MQ=40.56;MQRankSum=-0.792;QD=4.51;ReadPosRankSum=-0.036;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr2	132286046	rs3101992	A	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,81:0.47:172
chr2	132286061	rs60469601	A	G	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:91,78:0.46:169
chr2	132287824	rs10187823	C	T	5312.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:95,239:0.72:334
chr2	132288102	rs116538008	T	C	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.269;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=39.136;MLEAC=1;MLEAF=0.500;MQ=46.45;MQRankSum=-5.729;QD=3.85;ReadPosRankSum=-0.932;SOR=5.607;set=HC	GT:AD:AF:DP	0/1:61,16:0.21:77
chr2	132288315	rs11547023	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.469;MLEAC=1;MLEAF=0.500;MQ=52.04;MQRankSum=-5.500;QD=2.13;ReadPosRankSum=1.566;SOR=1.135;set=HC	GT:AD:AF:DP	0/1:104,23:0.18:127
chr2	132288362	rs201632382	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.542;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=16.172;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=-6.311;QD=1.68;ReadPosRankSum=-2.270;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:102,19:0.16:121
chr2	132290399	rs57007130	G	A	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:35,96:0.73:131
chr2	132290464	rs13660	G	A	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:75,105:0.58:180
chr2	132491544	rs7599401	C	G	2823.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	132494171	rs4850247	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:56,94:0.63:150
chr2	132494182	rs11690978	G	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:87,49:0.36:136
chr2	132494272	rs4850248	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	132558335	rs12992187	G	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr2	132586953	rs7370086	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	132587049	rs184309737	C	A	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-0.989;QD=22.46;ReadPosRankSum=-1.553;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	132587057	rs7369031	A	C	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-1.036;QD=20.55;ReadPosRankSum=0.507;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	132592178	rs9751367	T	C	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr2	132593636	rs59199382	C	T	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:24,83:0.78:107
chr2	133014491	.	C	T	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DP=430;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-9.246;QD=2.65;ReadPosRankSum=2.621;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:363,54:0.13:417
chr2	133014497	.	G	C	7768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.332;ClippingRankSum=0.000;DP=504;ExcessHet=3.0103;FS=2.633;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=1.249;QD=15.82;ReadPosRankSum=-1.077;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:289,202:0.41:491
chr2	133014504	rs79813268	G	T	7976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=1.662;QD=14.88;ReadPosRankSum=-0.899;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:313,223:0.42:536
chr2	133014510	rs9287404	T	C	13145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.911;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-7.553;QD=22.74;ReadPosRankSum=0.438;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:238,340:0.59:578
chr2	133014602	rs75245503	G	C	39128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=1579;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-14.977;QD=24.84;ReadPosRankSum=0.323;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:609,966:0.61:1575
chr2	133014612	rs74853538	A	C	39981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.268;ClippingRankSum=0.000;DB;DP=1627;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-14.254;QD=24.62;ReadPosRankSum=-0.457;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:620,1004:0.62:1624
chr2	133014619	rs78327226	C	T	6555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=1639;ExcessHet=3.0103;FS=4.938;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-21.022;QD=4.01;ReadPosRankSum=-2.438;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:1380,256:0.16:1636
chr2	133014640	rs78867621	C	T	8836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=1711;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-19.887;QD=5.18;ReadPosRankSum=-1.026;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:1400,307:0.18:1707
chr2	133014651	rs111708138	A	AC	36615.73	.	AC=1;AF=0.500;AN=2;DB;DP=1685;set=Intersection	GT:AD:AF:DP	0/1:580,1078:0.65:1658
chr2	133014657	rs113237573	G	A	9149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=1718;ExcessHet=3.0103;FS=2.222;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-15.730;QD=5.34;ReadPosRankSum=0.320;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1361,352:0.21:1713
chr2	133014678	rs72869462	A	G	44668.77	.	AC=1;AF=0.500;AN=2;DB;DP=1711;set=Intersection	GT:AD:AF:DP	0/1:542,1164:0.68:1706
chr2	133014703	rs72869464	T	C	45684.77	.	AC=1;AF=0.500;AN=2;DB;DP=1560;set=Intersection	GT:AD:AF:DP	0/1:449,1106:0.71:1555
chr2	133014721	rs72869465	T	C	42143.77	.	AC=1;AF=0.500;AN=2;DB;DP=1437;set=Intersection	GT:AD:AF:DP	0/1:392,1040:0.73:1432
chr2	133014751	rs75204936	T	C	14944.77	.	AC=1;AF=0.500;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	0/1:570,454:0.44:1024
chr2	133014776	rs72869466	CA	TG	13253.77	.	AC=1;AF=0.500;AN=2;DB;DP=759;JOINED;set=Intersection	GT:AD:AF:DP	0/1:423,335:0.44:758
chr2	133014786	rs72869468	G	A	6474.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:435,209:0.32:644
chr2	133075726	rs2598810	A	G	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:193,205:0.52:398
chr2	133075904	rs113311843	C	CA	8826.73	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:285,340:0.54:625
chr2	133174764	rs2241764	C	T	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:81,164:0.67:245
chr2	133174999	rs2241763	A	G	8506.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:199,391:0.66:590
chr2	133175524	rs34879126	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-0.417;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	133402607	rs1131671	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr2	133425912	rs2709533	C	T	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.235;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:114,41:0.26:155
chr2	133426183	rs2709532	G	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr2	133472385	rs11329925	CA	C	606.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=4.04;ReadPosRankSum=3.014;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:77,73:0.49:150
chr2	133489401	rs17397142	A	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:183,80:0.30:263
chr2	133539460	rs6717116	A	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr2	133539566	rs6730282	G	A	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:144,72:0.33:216
chr2	133540605	rs13016342	G	T	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:264,137:0.34:401
chr2	133541444	rs12691829	T	C	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.89;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	133541444	.	TGGAGCAGAAA	CGGAGCAGAAA,CGGAGCAGAAG	1183	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=21;MQ=60.0;NF=72,25;NR=51,12;PP=1183,413;QD=9.9005789638;SC=AAGAAATAACTGGAGCAGAAA;SbPval=0.52;Source=Platypus;TC=124;TCF=73;TCR=51;TR=123,37;WE=133541462;WS=133541434;set=Platypus	GT:AF:DP	0/1:0.99:124
chr2	133541454	rs12691830	A	G	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=-0.685;SOR=1.007;set=HC	GT:AD:AF:DP	0/1:98,49:0.33:147
chr2	133541575	rs12611515	C	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr2	133542014	rs12616282	T	C	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=4.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.559;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:194,96:0.33:290
chr2	133542545	rs10191147	G	A	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:209,86:0.29:295
chr2	133542585	rs17325719	C	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:246,100:0.29:346
chr2	133542991	rs61746268	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:136,96:0.41:232
chr2	133554068	.	C	T	817.77	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:67,41:0.38:108
chr2	133554288	rs1868076	A	G	8101.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	133971448	rs13393624	T	A	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:74,149:0.67:223
chr2	135076111	rs4954134	C	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	135096097	rs7598410	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	135260665	rs201742966	A	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-7.259;QD=1.21;ReadPosRankSum=0.068;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:189,22:0.10:211
chr2	135260672	rs199988367	T	C	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.926;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-7.176;QD=1.34;ReadPosRankSum=-0.698;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:176,21:0.11:197
chr2	135308431	rs59357769	A	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	135602601	rs6430545	T	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr2	135629927	rs12469941	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr2	135677268	rs3769024	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr2	135677471	rs3841862	A	AGTTT	807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.888;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=11.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-2.025;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:73,26:0.26:99
chr2	135694354	rs1823118	G	C	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr2	135694379	rs1374289	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,46:0.39:118
chr2	135703338	rs57267734	CT	C	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.908;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:74,51:0.41:125
chr2	135703650	rs201814332	G	GT	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=5.300;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.174;QD=0.65;ReadPosRankSum=1.839;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:218,54:0.20:272
chr2	135705558	rs1979033	G	A	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr2	135710322	rs10166142	A	G	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.834;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:64,32:0.33:96
chr2	135711516	rs3814355	C	T	1775.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:219,107:0.33:326
chr2	135711657	rs3814354	G	A	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:343,201:0.37:544
chr2	135740876	rs60969462	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:227,121:0.35:348
chr2	135741061	rs12623713	G	A	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr2	135745392	rs11888766	G	A	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:218,111:0.34:329
chr2	135745545	rs11899779	C	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:183,75:0.29:258
chr2	135745722	rs10928526	A	G	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:278,124:0.31:402
chr2	135748872	rs144837592	AAAAAC	A	523.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr2	135925411	rs77800947	C	T	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:212,115:0.35:327
chr2	136467164	rs2304367	C	A	4461.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	136511817	rs1050115	A	G	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:227,113:0.33:340
chr2	136527443	rs113881162	G	GTGAT	6312.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:2,144:0.99:146
chr2	136545844	rs1042712	C	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	136546110	rs2278544	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	136548169	rs892716	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	136548192	rs1808756	G	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	136555659	rs2322659	T	C	8756.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr2	136558157	rs748841	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	136561557	rs2304371	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	136565028	rs10928549	C	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	136569848	rs12988076	C	A	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	136575199	rs6719488	G	T	15069.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr2	136575534	rs4954449	T	C	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr2	136594158	rs2236783	G	A	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr2	136610598	rs4988226	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	136614255	rs309180	G	A	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	136622825	rs309177	A	G	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	136664812	.	CTTTTT	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.090;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr2	136690414	.	T	TA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.733;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:110,31:0.22:141
chr2	136956640	rs61193776	G	GA	284.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	137639616	rs1465612	C	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	137640006	rs11298935	CT	C	349.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	137814138	rs60939389	T	C	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=-0.264;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:94,79:0.46:173
chr2	137814804	rs6727323	G	A	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:229,124:0.35:353
chr2	137917922	rs4954474	T	A	2679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-3.423;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:378,160:0.30:538
chr2	138000226	rs7605259	T	C	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr2	138030032	rs76730255	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr2	138030271	rs10182152	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr2	138033428	rs67227746	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.101;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.776;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr2	138033674	rs146073386	TATATTTGA	T	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	138163391	rs1551281	T	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	138169158	rs1463285	T	C	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	138208631	rs1453302	G	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr2	138237038	rs1584435	C	T	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	138378351	rs58339575	AG	A	830.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr2	138378388	rs1448922	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr2	138420996	rs10206850	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,44:0.35:127
chr2	139045438	.	GTTTT	G	567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.79;MQRankSum=-3.560;QD=27.03;ReadPosRankSum=-0.438;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	139045444	rs11900034	TT	AA	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=3.615;QD=10.69;ReadPosRankSum=1.228;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	139045457	.	A	AAAAAAAAG	885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=53.46;MQRankSum=-4.191;QD=28.57;ReadPosRankSum=0.299;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	139045855	rs35998722	C	T	4753.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:113,202:0.64:315
chr2	139045972	rs6733578	T	C	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr2	139045987	rs13033503	C	T	6283.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:138,273:0.66:411
chr2	139046301	rs12691943	A	G	18993.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr2	139046328	.	C	T	3433.77	.	AC=1;AF=0.500;AN=2;DP=565;set=Intersection	GT:AD:AF:DP	0/1:373,191:0.34:564
chr2	139046385	rs13382964	G	A	8244.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr2	139308191	rs115949311	C	A	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.481;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=0.360;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:29,50:0.63:79
chr2	139308397	rs148464901	T	TTCTCTC	1187.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=43.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	139429068	rs10803570	G	A	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:214,132:0.38:346
chr2	140992337	rs13387241	C	A	1602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=-3.250;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:195,94:0.33:289
chr2	141004529	rs2129483	A	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	141026986	rs12477489	G	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,80:0.62:128
chr2	141032088	rs1386356	C	T	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=5.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.543;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:258,94:0.27:352
chr2	141113798	rs13017246	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	141260668	rs4444457	A	G	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:233,169:0.42:402
chr2	141267573	rs35821928	G	A	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=1.876;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:30,65:0.68:95
chr2	141267744	rs1948051	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	141274576	rs4954672	T	C	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,88:0.69:128
chr2	141283603	rs1352047	T	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	141284041	rs7562323	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	141294285	.	G	GA	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=2.571;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:26,33:0.56:59
chr2	141298467	rs6729619	A	C	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr2	141298674	rs13013854	T	C	3484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.613;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:209,107:0.34:316
chr2	141298682	rs11694934	G	C	3226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=-1.091;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:187,90:0.32:277
chr2	141298749	rs11694970	G	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr2	141299317	rs9287535	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.330;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr2	141457985	rs13431727	T	A	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:87,105:0.55:192
chr2	141458326	rs66521227	T	TA	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	141459964	rs16844555	C	T	4909.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:142,221:0.61:363
chr2	141460213	rs1372253	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr2	141473409	.	CA	C	50	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=4;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=50;QD=31.0;SC=TGAATATAAACATTTTTTTCT;SbPval=1.0;Source=Platypus;TC=13;TCF=10;TCR=3;TR=3;WE=141473417;WS=141473399;set=Platypus	GT:AD:AF:DP	0/1:10,3:0.23:13
chr2	141473505	rs4954852	A	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,29:0.33:87
chr2	141474402	rs5834770	G	GA	568.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:80,40:0.33:120
chr2	141474456	rs1372255	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr2	141527013	rs13002947	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	141528592	rs7599219	T	C	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr2	141533573	rs13009144	A	G	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	141533662	rs996361	T	C	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	141571329	rs3749010	T	C	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	141571440	rs17575847	C	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.806;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr2	141597549	.	A	C	473.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:80,31:0.28:111
chr2	141598473	rs35745624	A	AT	8199.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr2	141608042	rs112547492	A	T	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.97;ReadPosRankSum=-1.309;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr2	141625834	rs34488899	TA	T	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=4.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.479;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chr2	141709419	rs1429348	T	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=4.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.547;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:137,46:0.25:183
chr2	141747249	rs1429365	A	T	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:52,107:0.67:159
chr2	141747293	rs1429366	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr2	141751461	rs11678316	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr2	141751592	rs13007735	G	A	5359.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:121,248:0.67:369
chr2	141762830	rs13413663	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr2	141771058	rs3791766	T	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	141816621	rs1525579	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	141945949	rs1249434	C	T	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	142012036	rs9973397	T	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr2	142237868	rs4264514	G	A	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	142567701	.	AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAG	A	58.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=-1.171;QD=3.67;ReadPosRankSum=0.625;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr2	142567713	.	AGAAAGAAAGAAAGAAAGAAAGAAG	A	132.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.655;ClippingRankSum=-0.000;DP=50;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=0.589;QD=14.75;ReadPosRankSum=2.655;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	142567910	rs12990449	T	C	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=-2.382;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:132,85:0.39:217
chr2	143685122	rs3768849	T	C	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr2	143713700	rs351674	T	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	143718459	rs3069632	T	TAAAA	1632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.21;ReadPosRankSum=-0.101;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:31,54:0.64:85
chr2	143787069	rs41269813	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr2	143787161	rs6429999	C	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.306;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr2	143787274	rs6430000	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	143798189	rs9013	A	G	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:75,139:0.65:214
chr2	143913004	rs2580857	T	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	143973860	rs1451805	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	143986002	rs12691671	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr2	144193151	rs11438710	C	CT,CTT	490.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.939;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=0.490;QD=14.02;ReadPosRankSum=-1.014;SOR=1.314;set=HC	GT:AD:AF:DP	1/2:5,16,14:0.46,0.40:35
chr2	144193293	rs12621011	C	T	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-2.448;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:47,70:0.60:117
chr2	144194565	rs17230746	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.384;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:69,28:0.29:97
chr2	144899559	rs3731958	C	A	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr2	144934655	rs5834992	A	AG	528.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	144934819	rs5834993	T	TA,TAA	460.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.507;QD=13.96;ReadPosRankSum=-0.201;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:5,18,10:0.55,0.30:33
chr2	145146457	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-1.030;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr2	145255210	rs12691693	T	C	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	145255399	.	TATATATATATATGTCATTCTCAACATATATATATATATGTCATTCTCAAC	T	132.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=2.95;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	145255430	.	A	AT	79	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=0.9998;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=63.93;NF=0;NR=2;PP=79;QD=45.0;SC=CAACATATATATATATATGTC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=145255438;WS=145255420;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr2	145271226	rs182363818	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr2	147596973	rs4411641	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	148657117	rs1128919	G	A	3553.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:75,153:0.67:228
chr2	148674797	rs3764955	G	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr2	148675976	rs201553935	T	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr2	148677681	rs16828025	C	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr2	148680427	rs2303392	G	C	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	148680444	rs190038216	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr2	148701099	rs66919703	GA	G	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=1.154;QD=11.28;ReadPosRankSum=-1.626;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr2	148716099	rs12463798	G	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	148716428	rs2307394	T	C	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=-1.916;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:21,54:0.72:75
chr2	148733548	rs2307399	T	TA	781.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	149240657	rs5835195	GT	G	1870.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.032;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.722;QD=11.62;ReadPosRankSum=-0.232;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:31,130:0.81:161
chr2	149243260	rs2121344	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	149449185	rs6724787	G	A	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:156,199:0.56:355
chr2	149520214	rs10193313	C	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	149798213	rs73970609	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:44,36:0.45:80
chr2	149799027	rs77000624	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	149799216	rs61734995	T	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:96,86:0.47:182
chr2	149803357	rs73962006	A	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr2	149804599	rs111543209	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,45:0.47:96
chr2	149835264	rs60693991	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	149850790	rs78325731	G	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	149853960	rs6738277	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	149864403	rs117301696	T	C	188.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	149864414	rs80222509	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	149864699	rs73011347	A	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	149866627	rs6740780	T	C	2673.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:109,130:0.54:239
chr2	149866880	rs6747871	A	C	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.567;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=5.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.848;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr2	149868236	rs73011353	C	T	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	150064776	.	G	A	834.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr2	150305703	rs11681264	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr2	150320627	rs34341723	TA	T	1219.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:7,75:0.91:82
chr2	150427516	rs4500908	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	150428849	.	C	CAAAAAAAAAAAA	1117.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=46.57;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	150432377	rs12232959	C	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	150432469	rs10932467	G	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	150432976	rs11545261	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	150433128	rs11680630	C	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	150443689	rs4667420	C	G	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	150443813	rs4667419	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	151328284	rs11338446	GA	G	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:6,57:0.90:63
chr2	151343978	.	GAA	G	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=-0.633;QD=1.02;ReadPosRankSum=0.048;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr2	151343988	rs2334309	A	T	352.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.17;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.812;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	151900223	rs7589036	T	C	10372.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr2	151900390	rs150701043	TAAAAACAAAAAC	T,TAAAAAC	2720.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=137;set=Intersection	GT:AF:DP	1/2:0.39,0.61:67
chr2	152108261	rs4665119	T	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	152109159	rs289885	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	152117780	rs2271811	T	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr2	152118032	rs80001583	G	T	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr2	152118271	rs55775354	G	A	5136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.815;QD=24.34;ReadPosRankSum=1.445;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:83,128:0.61:211
chr2	152118275	rs56376752	A	G	5181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.798;QD=23.66;ReadPosRankSum=0.294;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:84,135:0.62:219
chr2	152118338	rs35240993	G	GT	1717.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:65,88:0.58:153
chr2	152138522	rs3771886	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=-0.252;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	152139271	rs10169816	C	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	152139416	rs1048135	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr2	152139493	rs10182245	A	G	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	152236045	rs35060021	TA	T	298.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=-0.497;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr2	152266473	rs2290368	T	C	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr2	152266632	.	C	A	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=3.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=-0.704;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:49,61:0.55:110
chr2	152266731	rs2290367	T	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr2	152267061	rs73004072	G	A	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=0.089;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:46,67:0.59:113
chr2	152267072	rs4664045	T	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr2	152267672	rs7585604	G	A	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	152273503	rs6735771	G	A	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	152298562	rs138147981	T	TTTTTATTTTA,TTTTTATTTTATTTTA	394.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;set=Intersection	GT:AF:DP	1/2:0.57,0.43:7
chr2	152303171	rs2432941	G	A	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr2	152322095	rs2444257	A	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr2	152331351	.	G	GT	61.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr2	152331418	rs1065177	C	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr2	152346494	rs13031275	A	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:92,70:0.43:162
chr2	152346979	rs1061305	T	C	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=1.004;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:50,56:0.53:106
chr2	152359276	rs201290038	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=1.100;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr2	152369117	rs13023600	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	152402515	.	T	TA	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.182;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:58,36:0.38:94
chr2	152403071	.	CTT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.146;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr2	152419392	rs74684819	A	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	152422076	rs2288210	C	G	2355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=2.397;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:154,119:0.44:273
chr2	152424933	rs3214503	T	TA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.033;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	152425306	rs79849542	G	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr2	152427249	rs7568873	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	152432311	rs33988153	T	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.64;ReadPosRankSum=0.139;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr2	152473986	.	CA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.461;QD=2.03;ReadPosRankSum=1.330;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	152475938	rs10186656	T	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	152476028	rs10172023	C	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr2	152481977	rs10186482	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	152490219	rs6709886	A	G	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-1.808;QD=11.00;ReadPosRankSum=0.064;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:76,94:0.55:170
chr2	152490458	rs6710212	A	G	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	152527572	rs7426114	C	T	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	152531077	rs6711382	A	G	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	152536498	rs6735208	T	A	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	152552062	rs6433569	A	C	9940.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr2	152554216	rs114323121	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr2	152566433	rs12464543	A	G	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.69;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	152573902	rs34733773	A	AGGC	7905.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	152573981	rs4611637	A	G	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	152581866	rs4300824	T	C	8139.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	152584153	rs4664499	A	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	152684704	rs150910136	A	AC	3606.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:55,151:0.73:206
chr2	152729138	rs770609	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	152827973	rs7567588	A	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	152828281	rs7607341	C	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	152954985	rs34347895	G	C	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr2	153000337	rs12617139	T	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr2	153004736	rs72864741	C	T	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.657;QD=8.96;ReadPosRankSum=-0.411;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:46,43:0.48:89
chr2	153004816	.	T	TA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.556;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=2.282;QD=3.43;ReadPosRankSum=-0.541;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr2	153192324	rs2003332	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr2	153405594	rs1155779	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr2	153415170	rs6705427	A	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	153415234	rs200953857	T	TG	1163.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,59:0.56:105
chr2	153415244	.	TC	CC	691	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=14;HapScore=4;MGOF=13;MMLQ=23;MQ=59.76;NF=44,24;NR=26,23;PP=536,691;QD=8.15387446496;SC=TTTTTTTTTTTCCCCAACAGA;SbPval=0.37;Source=Platypus;TC=99;TCF=66;TCR=33;TR=70,47;WE=153415252;WS=153415219;set=Platypus	GT:AD:AF:DP	0/1:29,70:0.71:99
chr2	153415244	.	TC	TCC	691	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000,0.5000;HP=14;HapScore=4;MGOF=13;MMLQ=23;MQ=59.76;NF=44,24;NR=26,23;PP=536,691;QD=8.15387446496;SC=TTTTTTTTTTTCCCCAACAGA;SbPval=0.37;Source=Platypus;TC=99;TCF=66;TCR=33;TR=70,47;WE=153415252;WS=153415219;set=Platypus	GT:AD:AF:DP	0/1:31,47:0.60:78
chr2	153415244	rs72868279	T	C,TC	4091.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.12;SOR=1.044;set=HC	GT:AD:AF:DP	1/2:0,69,33:0.68,0.32:102
chr2	153415376	rs6434098	T	G	5475.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	153417325	rs6713836	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	153435288	rs12693407	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	153435434	rs16831399	C	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr2	153463984	rs72210499	TACAC	T	199.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.29;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	153471255	rs70974877	T	TCAAAA,TCAAAACAAAACAAAACAAAA	877.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.26;QD=43.89;SOR=1.127;set=HC	GT:AD:AF:DP	1/2:0,11,9:0.55,0.45:20
chr2	153473435	rs7596408	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	153473492	rs13417781	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr2	153473521	rs12693415	A	C	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	153473794	rs2304556	T	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	153475263	rs10617862	GTA	G	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	153476066	rs5835439	G	GCCA	3650.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr2	153478931	rs7609122	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	153481943	rs2346532	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	153492910	rs1561267	G	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr2	153497168	rs1465818	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	153502243	rs71394494	G	GTATT	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	153504552	rs12693429	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:44,44:0.50:88
chr2	153514583	rs6713779	G	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	153514610	rs12999331	T	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr2	153519524	rs1036526	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr2	153519768	rs16831529	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	153520782	rs3762507	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr2	153520819	rs3762506	C	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	153529361	rs2304559	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	153533260	rs11544718	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr2	153535670	rs10166987	C	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	153549814	rs10172024	G	C	2575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.97;ReadPosRankSum=0.112;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:62,67:0.52:129
chr2	153549819	rs13003670	C	T	2630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=-0.066;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:64,70:0.52:134
chr2	153572438	rs2346548	C	T	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	153576548	.	G	GTCAGTCTTAAATGATTGGCTGCCAATGTTTCATTTCTTTATCATTCCCCTCCCCCCTTTTTTACCCTTTTTTGAATGTGCATGGAATGTAAATTA	2556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.728;QD=26.09;ReadPosRankSum=-0.688;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:41,57:0.58:98
chr2	153576580	.	A	ATTTC	871	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=3;HapScore=1;MGOF=9;MMLQ=28;MQ=59.79;NF=0;NR=19;PP=871;QD=47.2631578947;SC=CCAATGTTTCATTTATCATTC;SbPval=1.0;Source=Platypus;TC=66;TCF=4;TCR=62;TR=19;WE=153576588;WS=153576570;set=Platypus	GT:AD:AF:DP	0/1:47,19:0.29:66
chr2	153577013	rs9646744	G	A	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:110,119:0.52:229
chr2	154800874	rs4318348	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr2	155294364	rs10714112	TA	T	127.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=12.77;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	155306885	rs697648	C	T	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	155307068	.	C	A	1230.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr2	157183211	rs35479735	TC	T	2067.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,72:0.50:144
chr2	157189011	rs834836	G	C	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	157406249	rs2116665	G	A	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	157406296	rs2116664	A	C	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	157427593	rs1469652	T	C	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	157427837	rs1469651	C	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	157427850	rs1469650	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	158141079	rs2289941	T	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr2	158157361	rs3214040	C	T	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	158162475	rs3214039	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	158162521	rs3816595	T	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	158165004	rs6728956	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	158180784	.	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=2.337;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr2	158275111	rs5835667	T	TA	553.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-0.800;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:22,45:0.67:67
chr2	158283710	rs155614	A	G	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	158283980	rs376050248	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	158284056	rs155613	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	158291107	rs70987792	T	TAG	259.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.86;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	158291188	rs11904180	A	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	158291361	.	T	A	268	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=4;MGOF=19;MMLQ=28;MQ=47.53;NF=3;NR=4;PP=268;QD=43.2530303639;SC=TCTCTCTCTCTCACACACACA;SbPval=0.72;Source=Platypus;TC=15;TCF=7;TCR=8;TR=7;WE=158291371;WS=158291351;set=Platypus	GT:AD:AF:DP	1/0:8,7:0.47:15
chr2	158395079	rs7576514	C	G	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	158400908	rs6728987	C	T	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	158401137	rs10432556	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	158412542	rs13010956	T	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr2	158443889	rs4556933	G	A	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-1.069;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:144,123:0.46:267
chr2	158626980	rs1146031	C	T	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	158636910	rs2227861	G	A	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:113,114:0.50:227
chr2	158637137	rs1866885	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.038;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.199;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr2	158655883	rs111834201	C	CAA	1216.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.65;ReadPosRankSum=-1.863;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr2	159028800	rs2222390	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	159035344	rs3836162	A	AT,ATT	1389.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.000;QD=20.44;ReadPosRankSum=0.345;SOR=1.033;set=HC	GT:AD:AF:DP	1/2:2,36,30:0.53,0.44:68
chr2	159077019	rs958671	A	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	159166069	rs7559772	T	C	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	159195225	rs11686762	T	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	159312733	rs1111212	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	159312776	rs3796107	GA	TT	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr2	159389762	rs35112233	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr2	159434492	rs2356188	G	A	245.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	159434492	.	GAATAGTTA	AAATAGTTA,AAATAGTTG	28	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=0;MMLQ=28;MQ=60.0;NF=6,3;NR=1,1;PP=28,16;QD=8.96731607817;SC=TACATGTTCCGAATAGTTAAA;SbPval=0.65;Source=Platypus;TC=7;TCF=6;TCR=1;TR=7,4;WE=159434508;WS=159434482;set=Platypus	GT:AF:DP	0/1:1.00:7
chr2	159434500	rs2356189	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.28;ReadPosRankSum=-1.383;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	159434727	rs10933494	T	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	159434802	rs72184107	ATC	A	127.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	159477439	rs147357610	CTT	C	885.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr2	159517795	rs185109798	G	C	3991.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:197,190:0.49:387
chr2	159517972	rs143322313	G	T	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:79,70:0.47:149
chr2	159520085	rs3771679	G	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	159522879	rs2248854	C	G	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	159530651	rs2711034	A	T	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr2	159534863	rs2356505	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	159534874	rs2356506	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	159660870	rs17810398	C	T	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:87,54:0.38:141
chr2	159661077	rs2271663	C	T	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr2	159663599	rs9869	T	C	1518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.117;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:97,80:0.45:177
chr2	159672168	rs1515922	G	A	2149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.812;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:70,100:0.59:170
chr2	159672252	rs61740878	G	A	3710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=1.001;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:136,177:0.57:313
chr2	159672442	rs10016	G	A	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	159954175	rs34588551	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr2	159954420	rs13414916	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr2	159992572	.	CG	TG	284	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=11;MMLQ=22;MQ=66.12;NF=11,3;NR=5,2;PP=284,5;QD=18.6875;SC=CGCGCGCGCGCGTTTAAGGGA;SbPval=0.65;Source=Platypus;TC=18;TCF=12;TCR=6;TR=16,5;WE=159992580;WS=159992562;set=Platypus	GT:AD:AF:DP	0/1:15,5:0.25:20
chr2	159992572	.	CG	CGTG	284	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=11;MMLQ=22;MQ=66.12;NF=11,3;NR=5,2;PP=284,5;QD=18.6875;SC=CGCGCGCGCGCGTTTAAGGGA;SbPval=0.65;Source=Platypus;TC=18;TCF=12;TCR=6;TR=16,5;WE=159992580;WS=159992562;set=Platypus	GT:AD:AF:DP	0/1:2,16:0.89:18
chr2	160019863	rs12466551	A	G	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	160028532	rs62171125	T	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.141;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:28,33:0.54:61
chr2	160033052	rs17422070	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=4.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=2.004;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:33,40:0.55:73
chr2	160033174	rs759034	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	160034919	rs4665031	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	160035207	rs6748288	T	C	8216.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	160042380	rs79672338	C	T	3240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.051;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:232,174:0.43:406
chr2	160042430	rs13389867	G	A	2926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=0.005;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:201,153:0.43:354
chr2	160055448	rs13430891	T	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:54,56:0.51:110
chr2	160082354	rs12692544	C	T	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:82,63:0.43:145
chr2	160084224	rs2042494	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr2	160084263	rs2042495	A	G	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-1.054;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:20,33:0.62:53
chr2	160084473	rs2288110	A	C	235.96	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	160084534	rs2288111	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	160085289	rs76022760	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr2	160086395	rs143241176	A	C	2686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.433;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:98,129:0.57:227
chr2	160086653	rs4664276	CA	TG	5669.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;JOINED;set=Intersection	GT:AD:AF:DP	0/1:184,150:0.45:334
chr2	160086692	rs3821296	A	G	3163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-1.787;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:196,164:0.46:360
chr2	160087535	rs3821301	T	G	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr2	160132196	rs35620648	A	AC	594.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	160136337	rs174264	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	160176943	rs174229	A	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	160182074	rs440241	T	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	160182302	rs415793	C	T	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=9.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.70;ReadPosRankSum=1.556;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:43,35:0.45:78
chr2	160203934	rs965163	A	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	160231108	rs6742788	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	160239378	rs2302927	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	160241936	rs1469015	A	G	173.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	160243183	rs918351	TA	AT	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	160255276	rs62171541	T	C	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	160261729	rs74694096	AC	A	100	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=25.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	160285060	rs57144725	C	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	160285575	rs12473781	C	T	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	160285660	rs10754963	T	A	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	160295297	rs2302923	C	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	160304741	rs12470533	A	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	160335315	rs72947590	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	160602258	rs59109898	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	160604452	rs11555185	C	T	10977.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr2	160605268	rs1365803	T	C	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	160605489	rs10929950	C	T	409.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.953;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;MQRankSum=3.753;QD=31.54;ReadPosRankSum=1.901;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr2	160605498	rs4665112	T	C	409.96	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.48;MQRankSum=3.618;QD=34.16;ReadPosRankSum=1.044;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	160621354	rs5835760	G	GT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.632;QD=11.38;ReadPosRankSum=0.300;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr2	160637267	rs2303552	C	A	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	160637324	rs2303551	A	G	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	160654524	rs2556106	G	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	160663435	rs12463589	T	C	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	160663678	rs7566887	T	C	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	160673526	rs2059696	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	160676427	rs12692566	C	A	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	160676445	rs36120198	A	AT	797.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	160688351	rs6755783	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	160698700	rs41265133	A	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	160708645	rs2162500	C	G	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	160708923	rs36091128	GT	G	116.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	160710922	rs2729705	T	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	160711556	rs975490	T	G	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	160729134	rs1397705	A	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	160734668	rs17828159	T	C	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	160737495	rs2729712	A	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	160737560	rs2729711	G	T	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	160760972	rs1397707	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	160805993	rs6726923	C	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	160807742	rs952184	A	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	160808075	rs3828323	C	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	160811642	.	T	C	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-2.073;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:17,28:0.62:45
chr2	160833188	rs2715918	A	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	160840370	rs5835784	AC	A	328.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	160872989	rs10563068	GGT	G	2405.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	160873021	rs2715939	G	A	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.24;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	160873270	rs2667040	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr2	160873294	rs3833577	T	TA	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	160876827	rs1511213	A	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	160885418	rs35771982	G	C	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr2	160885442	rs3749117	T	C	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr2	160889673	rs2203053	G	A	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	160901517	rs4665143	A	G	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	160919020	rs3749119	C	T	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	160919040	rs11285500	AC	A	1677.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	160958145	rs7586751	T	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	160958349	rs34330288	GA	G	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr2	160964057	rs13009231	G	T	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	160964057	.	GGA	TGG	1179	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=28;NR=13;PP=1179;QD=30.0601920698;SC=CAAAGCTGTTGGAGTCATGGC;SbPval=0.56;Source=Platypus;TC=47;TCF=32;TCR=15;TR=41;WE=160964067;WS=160964047;set=Platypus	GT:AD:AF:DP	1/1:6,41:0.87:47
chr2	160964059	rs13008664	A	G	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	160968743	rs66470452	CA	C	836.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	161028992	rs1037694	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	161029218	rs2305818	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	161169828	rs10929977	C	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	161174693	rs1430	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	161797329	rs1524626	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	161797513	rs1524625	A	G	4815.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr2	162059969	rs11884495	A	T	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:95,84:0.47:179
chr2	162072738	rs1267034	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr2	162081128	.	A	AT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.583;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	162091836	rs3754970	T	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,23:0.44:52
chr2	162175290	rs1116165	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	162224193	rs58162668	G	GT	2673.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	162224495	rs2303318	A	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	162241846	rs62188123	T	C	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=1.378;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	162247772	rs1921674	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	162265270	rs16845844	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr2	162274607	rs200480786	ATGTGTG	A,ATGTGTGTGTGTG	828.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.60;ReadPosRankSum=1.097;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:1,15,12:0.54,0.43:28
chr2	162279850	rs139857158	GCT	G	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=5.063;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=5.143;QD=0.60;ReadPosRankSum=-1.356;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:381,47:0.11:428
chr2	162280748	rs890076	G	A	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	162627509	rs191005728	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr2	162815262	rs12466127	C	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	162821515	rs4233647	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr2	162849944	rs57794116	T	TA	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.975;SOR=0.371;set=HC	GT:AD:AF:DP	0/1:43,54:0.56:97
chr2	162875641	rs140360804	ATTAG	A	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr2	162876813	.	GTT	G	594.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=6.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=-0.189;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	162876828	rs35175377	CA	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.507;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	162877400	rs16846261	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.85;ReadPosRankSum=0.674;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	162890175	rs1558957	T	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	162891848	rs6432708	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,65:0.59:110
chr2	162903783	rs149913490	GA	G	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.357;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.522;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	162930286	rs3216773	CGCCAGGGTCCTAGCAGAA	C	1615.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr2	163030336	rs3764917	T	C	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.90;ReadPosRankSum=-1.833;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,46:0.47:97
chr2	163051415	rs1468916	C	T	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	163694878	rs4667768	C	G	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.481;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.88;ReadPosRankSum=-0.479;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr2	163694886	rs4667769	G	A	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.46;ReadPosRankSum=-0.440;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr2	164466039	rs3833554	AT	A	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr2	165349459	rs1051160	G	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.97;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	165349463	rs11765	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.13;SOR=3.516;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	165353712	rs8192673	C	T	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr2	165358655	rs7584035	T	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	165358672	rs4667463	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	165364887	rs8192674	G	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr2	165381542	rs34570870	C	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.314;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	165383686	.	AATATATATATAT	A	255.73	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	165424837	rs17437781	A	G	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:79,68:0.46:147
chr2	165477836	rs10200142	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr2	165544450	rs6738627	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr2	165548684	rs16849663	A	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,33:0.29:115
chr2	165551184	rs76695941	C	T	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-0.670;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:31,42:0.58:73
chr2	165557318	rs6712203	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr2	165578581	rs6414069	A	G	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	165584407	rs12692743	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	165586466	rs13392281	T	C	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	165586652	rs13432439	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.187;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr2	165586693	rs61553904	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr2	165586705	rs13395130	T	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	165630100	rs355862	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	165630414	rs355864	A	T	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr2	165630460	rs355865	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	165636332	rs355897	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	165657118	rs75458208	A	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr2	165657142	rs7588491	A	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr2	165657185	rs355915	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	165698547	rs2279982	G	A	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:75,85:0.53:160
chr2	165698715	rs71028447	A	AG	468.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	165793968	rs17353624	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr2	165809138	rs10544528	ATG	A,ATGTG	907.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/2:0.56,0.44:34
chr2	165986625	.	T	C	2417.77	.	AC=1;AF=0.500;AN=2;DP=229;set=Intersection	GT:AD:AF:DP	0/1:117,112:0.49:229
chr2	166012203	rs3731760	C	T	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	166018703	rs6756990	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	166018764	rs60156545	C	CT	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	166018901	rs11887309	C	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	166018990	rs11887343	C	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	166019384	rs9333576	T	C	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr2	166020295	rs2304710	C	T	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:142,180:0.56:322
chr2	166020893	rs7579000	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:131,131:0.50:262
chr2	166025174	rs4667795	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	166025417	rs4667796	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	166027176	rs3754961	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.15;ReadPosRankSum=-1.036;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	166032775	rs72471101	CATT	C	3665.73	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:80,97:0.55:177
chr2	166153499	rs7593568	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	166170127	rs2121371	T	C	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.374;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	166172317	rs1838846	A	G	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	166179650	rs1867864	C	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	166183577	rs17184707	C	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	166221582	rs3769951	C	T	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-1.494;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	166221883	rs67174953	GTATC	G	1039.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	166224047	rs2304010	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	166226581	rs72874371	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr2	166229922	rs6432821	T	C	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.45;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	166229922	.	TGGAAATGT	CGGAAATGA,CGGAAATGT	206	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=0;MMLQ=23;MQ=60.0;NF=1,5;NR=5,18;PP=38,206;QD=15.2446458104;SC=CTTTGTACCATGGAAATGTCA;SbPval=0.76;Source=Platypus;TC=23;TCF=5;TCR=18;TR=6,23;WE=166229938;WS=166229912;set=Platypus	GT:AF:DP	0/1:0.26:23
chr2	166229930	rs2304014	T	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.772;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr2	166245230	rs2060198	T	A	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:78,97:0.55:175
chr2	166514165	rs12620509	C	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	166514594	rs10803800	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	166535918	rs777346	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:105,110:0.51:215
chr2	166611006	rs62174818	C	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr2	166611086	rs41268661	C	T	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.260;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:55,68:0.55:123
chr2	166618262	rs1968294	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	166618301	rs138707955	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr2	166621354	rs2113840	T	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	166626606	rs4667836	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr2	166740469	rs115504901	A	G	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:98,94:0.49:192
chr2	166770120	rs10176588	A	G	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-1.773;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr2	166771663	rs7590559	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	166773971	rs6750044	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr2	166781242	rs58208220	T	TA	408.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr2	166788336	rs7592429	T	C	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	166797646	rs1432273	C	T	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:138,109:0.44:247
chr2	166799596	rs13000534	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	166799893	rs10930190	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	166802306	rs5836067	ACTGT	A	397.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	166810161	.	G	GCCCGCTCA,GCCCGCCCGCTCA	4046.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=177;set=Intersection	GT:AF:DP	1/2:0.74,0.24:99
chr2	166810373	rs1347041	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	166810433	rs5836068	GT	G	964.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	166892444	rs34673057	TAAA	T	972.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	166892448	rs114707732	A	T	982.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=5.351;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.95;ReadPosRankSum=1.735;SOR=1.926;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr2	166892788	rs2298771	C	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	166893081	rs7601520	G	A	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	166894230	rs2020318	T	C	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	166895913	rs201455607	CTTT	C,CT	1150.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=0.273;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:3,28,14:0.62,0.31:45
chr2	166896143	rs2126152	T	G	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	166897864	rs6432860	A	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	166897989	rs11394960	G	GA	383.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.051;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.526;QD=12.38;ReadPosRankSum=-0.835;SOR=0.250;set=HC	GT:AD:AF:DP	1/1:5,26:0.84:31
chr2	166900606	rs6753355	A	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	166903188	rs538921	A	C	3047.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	166903228	rs6432861	C	T	2111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.302;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:68,102:0.60:170
chr2	166903445	rs7580482	T	C	5815.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	166904346	rs1461193	G	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	166905375	rs1542484	A	G	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:42,47:0.53:89
chr2	166905480	rs994399	G	A	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	166905572	rs1542483	T	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	166909544	rs3812718	C	T	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:76,86:0.53:162
chr2	166909559	rs3812719	C	A	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	166915014	rs8191987	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.77;ReadPosRankSum=-1.267;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	166915335	rs10930201	C	A	165.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	166930214	rs566839	T	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	167060449	rs10180721	A	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	167060980	rs77944059	GAAAC	G	100	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	167085124	rs10199799	T	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.83;SOR=2.062;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	167085141	rs58519838	CTT	C	4351.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	167090042	rs722204	G	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	167094638	rs141268327	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	167099158	rs6746030	A	G	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	167137120	rs4525717	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=-2.350;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:60,41:0.41:101
chr2	167149693	rs7588632	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,33:0.48:69
chr2	167162277	rs4429487	G	A	6627.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	167163043	rs9646771	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr2	167163199	rs9646772	A	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	167163372	rs4583483	TC	CA	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	167163663	rs4447616	C	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	167168093	rs6432901	C	T	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	167262088	rs16852112	T	G	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	167262169	rs35344714	T	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr2	167262353	rs3791251	C	G	3453.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:183,169:0.48:352
chr2	167262939	rs33953730	A	G	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:67,92:0.58:159
chr2	167263204	rs36024626	A	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	167269629	rs33922582	T	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	167269793	rs34619171	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	167279922	rs6738031	C	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	167284520	rs3748895	T	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	167313313	rs138641247	AAT	A	99.14	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.05;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	167313333	rs56951383	T	G	59.56	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr2	167313337	rs7593207	T	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	167313451	rs11888208	T	C	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr2	167322455	rs147014741	T	G	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-1.552;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:38,59:0.61:97
chr2	167328750	rs2293567	C	T	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	167334085	rs7565062	G	T	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	167334234	rs16852181	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.116;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr2	167759948	rs7599152	C	T	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	167760451	rs5836125	AG	A	194.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	168726592	.	GTAT	G	160.73	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	168986154	rs925846	A	G	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	169103796	.	C	CGCCGGG	415.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.26;QD=37.79;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	169403993	.	AATCCTACCAACACTTTATTGGGATAATTGAGTAATGTGTAACTGGTGGCATTAAGAATCAC	A	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=3.047;QD=9.74;ReadPosRankSum=-0.163;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr2	169487610	rs11347055	GT	G	98.82	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	169487668	rs4667585	A	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	169674655	rs830026	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	169674663	rs830025	A	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	169674764	rs830024	C	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	169674806	rs2461389	G	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.837;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.820;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	169681278	rs11374385	T	TTTTGTTTG	3260.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=42.90;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	169707262	rs139707092	AAATTCTCTGG	A	3727.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	169712115	rs58938408	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.744;QD=9.99;ReadPosRankSum=0.543;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	169721377	rs479661	G	A	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	169721381	rs3931	A	G	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	169727879	rs61598834	G	GA	990.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	169728069	.	GAAA	G	2648.73	.	AC=2;AF=1.00;AN=2;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;QD=31.91;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:2,81:0.98:83
chr2	169730344	rs16856071	A	G	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	169758147	rs6715133	C	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	169763148	rs560887	T	C	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	169764176	rs492594	G	C	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:110,120:0.52:230
chr2	169780366	rs579275	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	169789016	rs497692	T	C	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.437;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:90,60:0.40:150
chr2	169801488	rs853789	A	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	169814347	rs853773	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	169814655	rs853772	G	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	169820618	rs4148796	AT	GC	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr2	169824739	rs4148789	T	TA	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	169824743	rs2389613	C	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	169824749	rs28405534	C	A	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	169826877	rs2193831	C	T	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr2	169828325	rs2241340	A	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	169830051	rs2389605	C	T	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	169830155	rs2287623	G	A	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	169830328	rs2287622	A	G	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	169836182	rs368187290	CAAAAAAAAAAA	C	899.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	169842809	rs2287618	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	169989015	rs73030803	T	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:100,79:0.44:179
chr2	169994021	rs369228824	AAG	A	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.563;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.526;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:100,18:0.15:118
chr2	169997051	rs990626	G	A	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.326;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:41,55:0.57:96
chr2	170003432	rs4667591	T	G	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	170010985	rs2075252	T	C	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	170027170	.	C	A	2726.77	.	AC=1;AF=0.500;AN=2;DP=247;set=Intersection	GT:AD:AF:DP	0/1:115,130:0.53:245
chr2	170032989	rs2229265	C	T	7460.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr2	170048482	rs149148763	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=1.931;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr2	170062201	rs113353000	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.523;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	170063783	rs13417389	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr2	170070348	rs11886219	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr2	170073073	rs13417486	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr2	170073087	rs13431061	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr2	170077165	rs3815572	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr2	170082013	rs2075246	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	170088351	rs2302694	G	A	929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=0.241;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr2	170088477	rs2302693	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	170088506	rs2302692	T	C	64.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr2	170089824	rs2239596	T	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-2.261;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:27,46:0.63:73
chr2	170092395	rs2229267	A	G	2270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.826;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=3.048;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:118,120:0.50:238
chr2	170099446	rs831041	T	G	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:172,188:0.52:360
chr2	170099473	rs831042	T	C	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:213,206:0.49:419
chr2	170099895	rs2075255	A	C	5886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.16;ReadPosRankSum=1.208;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:144,148:0.51:292
chr2	170099899	rs2075254	G	A	6000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.17;ReadPosRankSum=0.753;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:152,161:0.51:313
chr2	170103336	rs831043	T	C	3058.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:150,155:0.51:305
chr2	170103351	rs2075249	G	T	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:128,138:0.52:266
chr2	170104104	rs13027608	C	T	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr2	170115588	rs2241190	T	C	3401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=3.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=-0.214;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:169,176:0.51:345
chr2	170115672	rs33954745	A	G	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:136,107:0.44:243
chr2	170129528	rs830994	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:140,110:0.44:250
chr2	170129636	rs830995	A	G	2476.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	170134191	rs831003	G	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	170139346	rs831010	C	T	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	170139639	rs831011	A	G	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	170151227	rs10567789	TAA	T	60	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.50;ReadPosRankSum=-0.619;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	170218816	rs1559013	T	C	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	170218847	rs1559014	C	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	170336024	rs1879466	G	C	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	170339003	rs2353187	C	A	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	170355944	rs12692909	A	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	170360765	rs72885849	G	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr2	170367099	rs28763868	G	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr2	170393925	rs2683423	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	170394487	rs2290005	T	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.570;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr2	170403030	rs2253680	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,44:0.42:104
chr2	170411693	rs2683455	T	C	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr2	170413601	rs2592824	A	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr2	170413815	.	CA	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=1.279;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr2	170413897	rs56157235	G	GA	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	170425523	rs2683446	A	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.08;ReadPosRankSum=2.266;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	170463551	rs2592813	T	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	170488454	rs3754921	A	G	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=1.011;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:48,50:0.51:98
chr2	170489713	.	T	G	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=0.903;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	170492567	rs2290007	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=8.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=-1.156;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	170492584	rs2290008	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=0.718;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	170493103	rs1050354	T	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr2	170493863	rs8207	A	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.471;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	170504672	.	CAAAAAAAAAAAAAAAA	C	636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.74;ReadPosRankSum=-0.322;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:3,25:0.89:28
chr2	170505684	rs3213946	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr2	170531572	rs11682248	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	170531614	rs11688600	A	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	170550727	rs11690884	G	T	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.874;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:92,62:0.40:154
chr2	170550839	rs3820952	A	G	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:81,64:0.44:145
chr2	170550956	rs1446901	A	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	170558231	rs11685651	T	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr2	170558293	rs200739872	AAAAAG	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr2	170605981	rs4667607	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	170606438	.	TATAC	T	368	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=3;MGOF=29;MMLQ=25;MQ=57.71;NF=1;NR=6;PP=368;QD=53.7142857143;SC=TATATATATATATACACACAC;SbPval=0.65;Source=Platypus;TC=7;TCF=1;TCR=6;TR=7;WE=170606458;WS=170606428;set=Platypus	GT:AD:AF:DP	1/0:0,7:1.00:7
chr2	170606476	.	CAT	C	171	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=2;HapScore=2;MGOF=116;MMLQ=28;MQ=56.01;NF=0;NR=6;PP=171;QD=33.0;SC=TATATGTATACATATATATGT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=170606485;WS=170606466;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	170606553	.	A	AC	108	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=1;HapScore=2;MGOF=130;MMLQ=23;MQ=46.11;NF=1;NR=2;PP=108;QD=43.6666666667;SC=GTGTATATATAGTATGTATGT;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=170606561;WS=170606545;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	170606570	.	G	A	49	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=2;MGOF=145;MMLQ=28;MQ=49.53;NF=2;NR=2;PP=49;QD=20.9428031368;SC=ATGTATACATGTATGTGTATA;SbPval=0.52;Source=Platypus;TC=5;TCF=2;TCR=3;TR=4;WE=170606578;WS=170606560;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr2	170606654	.	ATG	A	52	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=4;MGOF=55;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=52;QD=25.0;SC=ATACGTATATATGTGTATATA;SbPval=0.42;Source=Platypus;TC=6;TCF=1;TCR=5;TR=3;WE=170606666;WS=170606644;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr2	170606658	rs1469355	G	A	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	170606724	rs10164599	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	170632960	rs150673586	C	CA	2580.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:3,123:0.98:126
chr2	170632969	rs55969365	C	A	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	170633023	rs11422611	T	TA	4785.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	170633067	rs6745191	G	T	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr2	170633103	rs11325477	GA	G	2389.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	170668106	rs2246149	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	170668813	rs3731674	C	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	170676227	rs1541776	T	C	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	170677837	rs59311986	AC	A	357.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	170677855	rs34089373	G	GT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.257;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.427;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-1.040;QD=8.09;ReadPosRankSum=-0.900;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	170684224	rs2303555	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr2	170684593	rs115491675	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,72:0.53:136
chr2	170747585	.	TA	T	42	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=60;MMLQ=23;MQ=60.0;NF=0;NR=1;PP=42;QD=75.0;SC=ATGCATATATTATGTGTTTAA;SbPval=0.25;Source=Platypus;TC=4;TCF=3;TCR=1;TR=1;WE=170747593;WS=170747575;set=Platypus	GT:AD:AF:DP	0/1:3,1:0.25:4
chr2	170762487	rs10171268	C	T	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	170762566	rs10194785	A	T	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:146,174:0.54:320
chr2	170782037	rs1461958	C	T	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	170782338	rs13016918	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	170784004	rs6723655	T	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	170784049	rs898851	G	A	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	170821010	rs10197085	A	G	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-2.657;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:98,60:0.38:158
chr2	170850738	rs1461959	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	170865588	rs10205516	G	T	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	170870595	rs10497357	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr2	170871950	rs16857446	T	G	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	170871976	rs13028230	A	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	170911950	rs6741614	T	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr2	170917648	rs10203212	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr2	170917983	rs35032863	CT	C	2036.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:24,132:0.85:156
chr2	170929880	rs10202446	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr2	171034900	rs72882094	G	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr2	171070785	rs72885631	T	G	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	171070810	rs67994603	G	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	171071369	rs4667626	C	T	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	171073887	rs2161916	G	A	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr2	171092445	rs1035625	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	171192084	rs12466203	G	A	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,66:0.51:129
chr2	171225841	rs4668246	A	G	2890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=-1.204;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:125,145:0.54:270
chr2	171242761	rs17497636	G	A	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.584;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=0.230;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:90,64:0.42:154
chr2	171243920	rs72874578	C	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr2	171256597	rs7561268	A	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	171259308	rs17579757	T	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr2	171260708	rs10930425	C	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr2	171260787	rs6736609	G	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr2	171260820	rs6751520	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr2	171261021	rs6751781	T	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	171264091	rs138990294	T	TGCTCTGGATATGAAA,TGCTCTGGATATGAAAGCTCTGGATATGAAA	1579.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	1/2:0.56,0.44:27
chr2	171264179	rs72876321	C	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:91,79:0.46:170
chr2	171300575	rs17426211	C	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:97,59:0.38:156
chr2	171300648	rs4667639	T	A	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	171319997	rs12477518	A	C	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.067;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:72,79:0.52:151
chr2	171323328	rs4359605	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	171355198	rs6761297	A	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	171355329	rs6733198	G	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	171356274	rs10185178	G	A	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	171356423	rs9752383	T	C	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.849;QD=4.85;ReadPosRankSum=1.095;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	171358211	rs7593940	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	171358474	rs7608168	T	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	171503330	rs6761488	C	T	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=1.617;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	171508490	rs10718459	CA	C	905.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	171570151	rs72885464	C	T	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:154,164:0.52:318
chr2	171570488	rs7563812	C	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:55,53:0.49:108
chr2	171573185	rs1134626	G	T	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:192,193:0.50:385
chr2	171627676	rs1861462	T	G	6520.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	171632385	rs10626619	C	CTT	1046.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	171632401	rs13028382	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=-0.943;QD=4.32;ReadPosRankSum=-0.021;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	171634347	rs11334749	TA	T	1968.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chr2	171649402	rs3764916	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.496;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr2	171654663	rs2287111	A	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	171678379	rs2241165	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr2	171678625	rs769404	T	C	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:158,184:0.54:342
chr2	171693455	rs769390	A	C	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr2	171702480	rs701492	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr2	171709430	rs769391	A	G	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	171786169	rs2676158	A	G	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	171786239	rs3770442	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr2	171793357	rs35123411	C	A	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	171818289	rs2557804	G	A	8641.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr2	171822466	rs4668356	C	T	23209.77	.	AC=2;AF=1.00;AN=2;DB;DP=895;set=Intersection	GT:AD:AF:DP	1/1:0,892:1.00:892
chr2	171851048	rs11397597	C	CA	521.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=0.505;QD=14.49;ReadPosRankSum=0.630;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:3,33:0.92:36
chr2	171862578	.	T	TA	446.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr2	171862954	rs148912074	TAAAA	T	1009.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr2	171906469	rs3217296	GA	G	1957.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,59:0.51:116
chr2	171910256	rs73027271	T	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-0.072;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:50,40:0.44:90
chr2	171910313	rs11553951	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr2	171916664	rs2676130	A	T	1267.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.854;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.86;ReadPosRankSum=-0.705;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr2	171938279	rs11458941	G	GT	749.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr2	172016727	.	C	CG	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=1.481;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	172016756	rs113416007	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.574;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	172180771	rs10205459	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	172188368	rs13023973	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr2	172193808	rs3731987	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	172216969	rs3731986	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr2	172314644	rs200749196	A	AT	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	172378818	rs868106	A	G	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:57,73:0.56:130
chr2	172378889	rs2356782	C	G	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.68;ReadPosRankSum=0.510;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:23,28:0.55:51
chr2	172378893	rs3731976	G	A	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=8.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=1.336;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chr2	172379649	rs115283512	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr2	172379686	rs960750	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=1.740;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:63,36:0.36:99
chr2	172379781	rs960749	G	A	1971.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:184,109:0.37:293
chr2	172379936	rs960748	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr2	172398311	rs7586144	T	C	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	172411273	rs10455	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	172549248	rs6433311	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	172563922	rs312925	G	A	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr2	172564021	rs312924	A	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	172569134	rs5836347	AT	A	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.351;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr2	172582111	rs35175731	T	TG	94.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.82;ReadPosRankSum=1.383;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	172582281	rs139032813	A	ATTAC	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	172582344	rs139881666	AAC	A	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	172644229	rs2292813	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	172650382	rs6745143	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	172709215	rs3770444	G	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	172712480	rs2056202	T	C	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=1.541;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr2	172725301	rs1878583	A	G	7644.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr2	172864845	rs6730085	C	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:38,30:0.44:68
chr2	172865009	rs62183782	T	A	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=0.400;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:96,75:0.44:171
chr2	172965436	.	C	T	761.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr2	172966250	rs2228184	T	C	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,70:0.47:148
chr2	172967302	rs743605	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr2	173292709	rs6744873	A	G	2851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=-0.533;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:78,77:0.50:155
chr2	173292713	rs6716540	C	T	2713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=0.247;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:76,71:0.48:147
chr2	173292728	rs6731763	T	C	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.327;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:56,55:0.50:111
chr2	173332115	rs2272499	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr2	173334161	rs147116420	T	TATGATTTAGTACC	528.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr2	173337495	rs16860497	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr2	173337681	rs16860498	G	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr2	173340198	rs3792257	A	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	173352103	rs2293649	C	T	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:157,184:0.54:341
chr2	173353060	rs1319059	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	173355907	rs56084828	A	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:63,83:0.57:146
chr2	173428871	rs80228609	TCTC	T	2951.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:96,79:0.45:175
chr2	173429033	rs4972842	T	A	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	173429496	rs10531054	TTAGG	T	112.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr2	173435578	.	C	CT	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.452;QD=1.95;ReadPosRankSum=0.009;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:87,28:0.24:115
chr2	173435658	rs141130222	CAG	C	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	173600783	rs34574292	C	CG	4907.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	173659913	rs7585729	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	173686663	rs2258180	G	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	173686798	rs2258175	A	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	173793096	rs3835838	GA	G	1034.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	173848200	.	CT	C	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=5.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=2.265;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr2	173861340	rs2290374	G	A	4280.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	173861450	rs2290375	A	T	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	173861456	rs5010643	G	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	173866203	rs2028934	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	174055731	rs2289399	A	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr2	174068383	rs13011539	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	174068513	rs11899707	G	C	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr2	174074353	rs2289398	T	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	174074375	rs2289397	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	174074407	rs2289396	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	174104037	rs72436366	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.467;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr2	174123399	rs820008	A	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	174128513	rs3769148	C	T	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:104,96:0.48:200
chr2	174131511	.	T	TA	73.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.12;ReadPosRankSum=-0.140;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr2	174223675	rs11675433	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr2	174228418	rs4972555	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	174228744	rs1529887	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	174230153	rs2288993	C	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	174230983	rs35959156	G	GT	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.82;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	174828618	rs113303834	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=0.804;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr2	174943876	rs3754812	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr2	174946760	rs11558990	T	C	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-0.888;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:45,52:0.54:97
chr2	174987794	rs34684057	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	174988189	rs10930639	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-1.018;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	175201299	rs62174227	C	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:122,121:0.50:243
chr2	175223296	rs4972650	T	A	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	175244756	rs2358666	T	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	175245627	.	TATC	T	40	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=40;QD=37.5;SC=TACACTATGATATCATGTTAT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=2;WE=175245637;WS=175245617;set=Platypus	GT:AD:AF:DP	0/1:6,2:0.25:8
chr2	175263218	rs10930660	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	175289259	rs41270195	G	T	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.982;SOR=0.334;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr2	175289314	rs17255817	T	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=-0.328;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:56,36:0.39:92
chr2	175292364	rs17256082	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.72;ReadPosRankSum=-0.135;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	175292580	rs145699077	TTCAAATTTATCAG	T	1135.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr2	175300997	rs6757461	G	A	3079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.168;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:163,154:0.49:317
chr2	175306645	rs34371550	AT	A	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.771;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr2	175306691	rs35594437	G	A	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	175306804	rs7574442	C	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr2	175309624	rs12993286	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr2	175309792	rs34291465	T	C	1995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-1.789;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:125,102:0.45:227
chr2	175318396	.	G	GA	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.350;QD=4.68;ReadPosRankSum=-2.273;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr2	175318590	rs12468711	G	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr2	175326259	rs11904003	A	G	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:96,93:0.49:189
chr2	175335076	rs2358637	G	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	175426750	rs6732100	A	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr2	175431990	rs143689509	AAGAG	A	661.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr2	175436234	rs1044335	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	175436940	rs4972450	G	A	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	175439512	rs1367218	T	C	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	175439681	rs3049897	T	TAA	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=-1.750;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chr2	175446270	rs13401162	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	175613059	rs3816448	A	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	175613169	rs2305414	A	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr2	175613600	rs2646159	T	C	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	175614908	.	CAAA	C,CA	1799.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;QD=24.32;SOR=1.078;set=HC	GT:AD:AF:DP	1/2:6,20,48:0.27,0.65:74
chr2	175622178	rs11327107	TG	T	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	175622788	rs2646164	G	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	175622907	rs2600687	T	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	175624107	rs34695580	GA	G	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr2	175629021	rs7560774	C	A	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:62,83:0.57:145
chr2	175666656	rs2646153	G	A	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	175689249	.	G	GA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-1.011;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:134,31:0.19:165
chr2	175689342	rs149952097	C	CTATA,CTATATA	1136.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=49;set=Intersection	GT:AF:DP	1/2:0.64,0.25:36
chr2	175711942	rs14228	C	T	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	175979684	rs62184471	A	G	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr2	176844577	rs140451504	C	T	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.028;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr2	176866756	rs79273881	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	176866967	rs935492	C	T	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:60,89:0.60:149
chr2	176866994	.	A	G	1131.77	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:78,57:0.42:135
chr2	176867131	rs747051	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr2	176957580	.	GGGGCCA	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.657;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:33,4:0.11:37
chr2	176996025	.	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.105;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=15.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.343;SOR=4.172;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr2	178301428	rs3754989	C	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	178326838	rs1979059	C	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	178346654	rs140823121	GCCATTATTCC	G	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=60.98;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	178362572	rs12468046	G	A	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	178402786	rs3213945	G	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,62:0.42:149
chr2	178417062	rs61743720	C	T	5814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=696;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-1.559;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:386,306:0.44:692
chr2	178417142	rs11694988	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:114,77:0.40:191
chr2	178417225	rs11695035	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr2	178481818	rs10497497	G	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:182,129:0.41:311
chr2	178494173	rs3830637	G	GGGA	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr2	178528703	rs13025391	C	T	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:105,98:0.48:203
chr2	178528789	rs13025904	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr2	178534110	rs2222711	G	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	178534324	rs6433687	A	G	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.738;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:62,82:0.57:144
chr2	178540293	rs3770016	A	G	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:101,66:0.40:167
chr2	178545713	rs4538242	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	178565815	rs10201180	T	C	921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.619;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:45,48:0.52:93
chr2	178576681	rs13428806	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	178633945	rs34543540	A	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,30:0.56:54
chr2	178681716	rs1438059	G	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr2	178704882	rs3770054	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr2	178762824	rs71423514	T	C	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:202,137:0.40:339
chr2	178764364	.	AAT	A	218.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	178769917	rs13012088	G	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.966;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:47,42:0.47:89
chr2	178769992	rs2695096	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	178936373	rs1435573	T	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	178936614	rs6433711	C	T	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr2	178977620	rs2276622	C	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr2	178986123	rs200695432	G	GTA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=6.726;MLEAC=1;MLEAF=0.500;MQ=62.45;MQRankSum=-0.157;QD=11.30;ReadPosRankSum=-0.725;SOR=0.047;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	178986130	rs200040728	TACACAC	T	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=62.89;MQRankSum=0.074;QD=15.69;ReadPosRankSum=-0.047;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	178986138	rs201783668	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=6.864;MLEAC=1;MLEAF=0.500;MQ=62.89;MQRankSum=0.074;QD=16.22;ReadPosRankSum=0.330;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	179203797	rs1434087	G	A	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr2	179226290	rs1560871	T	C	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr2	179236831	rs6433724	A	G	996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-0.597;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr2	179238507	rs7595571	T	C	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr2	179238841	rs10190530	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	179250397	rs2276617	A	G	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	179258923	rs919177	C	T	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	179312440	rs150523431	G	GTAC	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	179321039	rs80082011	GA	G	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.75;ReadPosRankSum=-2.655;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	179324025	rs7600176	C	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr2	179330468	rs11336824	TA	T	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.494;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	179341953	rs6704545	G	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr2	179363807	rs3214536	A	AT	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr2	179363909	.	A	AT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.158;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr2	179366093	rs2303537	C	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr2	179367086	rs967507	A	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.56;ReadPosRankSum=0.029;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr2	179395958	rs3813250	T	C	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=4.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.322;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:108,90:0.45:198
chr2	179400585	.	GA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.192;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr2	179401740	rs55675869	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr2	179406003	rs3731750	C	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,47:0.44:108
chr2	179407763	rs58609542	C	CT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-2.193;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:91,27:0.23:118
chr2	179411011	rs72648257	T	C	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:168,164:0.49:332
chr2	179414705	rs56145100	A	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr2	179421694	rs9808377	A	G	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:148,141:0.49:289
chr2	179423099	rs12621078	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,80:0.44:183
chr2	179427186	rs2366751	A	G	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:239,179:0.43:418
chr2	179427536	rs3829746	T	C	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:98,103:0.51:201
chr2	179427544	.	T	A	2023.77	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr2	179429004	rs56214710	G	A	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:181,177:0.49:358
chr2	179430060	rs3813247	G	T	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:139,106:0.43:245
chr2	179431594	rs3731745	A	G	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:251,207:0.45:458
chr2	179432185	rs12463674	A	G	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:139,145:0.51:284
chr2	179433221	rs56018860	T	C	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:126,110:0.47:236
chr2	179433580	rs3813246	T	C	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:184,168:0.48:352
chr2	179434139	rs3813245	A	G	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:131,119:0.48:250
chr2	179440029	rs12464787	G	A	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:104,135:0.56:239
chr2	179443217	rs3769864	T	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	179444289	rs2288570	A	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:69,75:0.52:144
chr2	179444626	rs72646874	A	C	4731.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:249,228:0.48:477
chr2	179444768	rs4145333	C	G	8593.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr2	179447848	rs4894029	T	C	2594.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:131,132:0.50:263
chr2	179448315	rs72646865	A	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	179448911	rs16866400	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	179451420	rs2042996	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:88,74:0.46:162
chr2	179454394	rs1560221	A	G	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:158,133:0.46:291
chr2	179455207	rs2163009	T	C	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:155,141:0.48:296
chr2	179460214	rs376680679	AT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.753;QD=0.50;ReadPosRankSum=-0.286;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr2	179460311	rs202076328	C	T	2351.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:120,112:0.48:232
chr2	179460557	rs72646834	A	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr2	179462494	rs35833641	A	G	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:167,141:0.46:308
chr2	179463446	rs3214578	T	TA	1355.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:85,77:0.48:162
chr2	179464245	rs2288568	A	G	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr2	179464527	rs1001238	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:90,72:0.44:162
chr2	179469386	rs10497518	A	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr2	179472292	rs2303832	T	A	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:204,192:0.48:396
chr2	179472693	rs2303831	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:142,104:0.42:246
chr2	179474466	rs2288566	C	T	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:108,100:0.48:208
chr2	179477332	rs34928195	AT	A	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr2	179477476	rs72677248	T	G	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:48,47:0.49:95
chr2	179479118	rs200669885	A	AT	1149.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:68,68:0.50:136
chr2	179484892	rs72677228	T	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:90,51:0.36:141
chr2	179485599	rs2303829	A	G	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:114,120:0.51:234
chr2	179487314	rs200732906	C	CT	197.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,20:0.32:63
chr2	179499530	rs2288563	T	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,84:0.50:167
chr2	179500790	rs55847232	A	G	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:157,133:0.46:290
chr2	179501953	rs2742324	T	C	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr2	179505896	rs2243452	A	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr2	179514420	rs1366677	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr2	179514433	rs2562845	T	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,39:0.48:81
chr2	179514508	rs2742356	A	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr2	179515437	rs2742355	T	G	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr2	179515687	rs2562846	T	C	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	179517654	rs2742354	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	179528378	rs2163008	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr2	179529273	rs2562849	A	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:94,72:0.43:166
chr2	179529497	rs2742353	T	G	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:84,83:0.50:167
chr2	179531693	rs2562850	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	179539903	rs2472751	C	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr2	179545859	rs36051007	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr2	179548695	rs372078760	AT	A	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.523;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:21,34:0.62:55
chr2	179553917	rs2627038	G	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr2	179554305	rs2244492	C	T	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	179558282	rs2255167	T	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.16;ReadPosRankSum=0.195;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	179558366	rs2042995	T	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr2	179563643	rs368277751	TA	T	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.548;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr2	179566091	rs201857417	C	CT	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.333;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	179566146	rs2251987	T	G	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	179569400	rs2742344	C	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,71:0.49:146
chr2	179569436	rs2742343	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr2	179570114	rs2742342	A	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-0.376;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	179570122	rs2742341	C	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.639;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-0.268;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	179574384	rs2742332	C	T	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:143,127:0.47:270
chr2	179576596	rs2742331	A	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	179578730	rs2562839	G	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:152,115:0.43:267
chr2	179578937	rs2742330	A	G	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=1.184;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:81,80:0.50:161
chr2	179579212	rs2562838	T	C	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:142,113:0.44:255
chr2	179579366	rs2627044	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr2	179579694	rs2562837	T	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:97,66:0.40:163
chr2	179579822	rs2562836	T	A	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:126,111:0.47:237
chr2	179580434	rs2742329	A	G	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:115,127:0.52:242
chr2	179580583	rs2562834	T	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	179581835	rs2562832	C	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr2	179582537	rs2627043	G	T	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:125,134:0.52:259
chr2	179585266	rs2562831	C	T	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	179585393	rs2562830	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr2	179585963	rs2742328	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	179586901	rs143276035	G	GT	1576.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:98,88:0.47:186
chr2	179587687	rs2742327	T	C	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:140,149:0.52:289
chr2	179589371	rs2562852	G	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr2	179589919	rs2243804	A	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	179592161	rs2255480	A	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr2	179595117	rs17076	C	G	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:52,53:0.50:105
chr2	179595577	rs72394294	GT	G	984.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.379;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.319;QD=7.19;ReadPosRankSum=0.682;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:67,70:0.51:137
chr2	179600563	rs2742348	G	A	7452.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr2	179600648	rs2742347	C	T	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:100,137:0.58:237
chr2	179604160	rs1883085	T	G	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:186,127:0.41:313
chr2	179604366	rs2562829	T	G	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:162,119:0.42:281
chr2	179604742	rs1883084	G	A	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:73,98:0.57:171
chr2	179605180	rs746578	C	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:79,49:0.38:128
chr2	179605705	rs2742357	A	G	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr2	179606538	rs2627037	G	A	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr2	179611711	rs66677602	C	A	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:154,117:0.43:271
chr2	179613264	rs77419653	C	T	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:99,110:0.53:209
chr2	179614952	rs10803917	A	G	5446.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	179615887	rs922984	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.989;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:49,36:0.42:85
chr2	179615931	rs922985	C	G	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	179615994	rs922986	T	C	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	179616770	rs58651353	GA	G	365.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.031;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.554;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr2	179618019	rs3754953	T	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	179620951	rs7585334	C	T	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:126,105:0.45:231
chr2	179621477	rs6433728	C	T	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	179623758	rs2291310	C	T	2023.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:132,101:0.43:233
chr2	179623939	rs6705594	T	C	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	179629363	rs4894043	T	C	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	179629461	rs2291311	C	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr2	179631214	rs2291312	T	C	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=-1.845;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:88,87:0.50:175
chr2	179631362	rs3816782	A	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=-0.573;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:20,41:0.67:61
chr2	179632710	rs2291313	T	C	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:153,165:0.52:318
chr2	179633298	rs4471922	G	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	179634376	.	GTATA	G,GTA	1056.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.32;QD=33.02;SOR=2.448;set=HC	GT:AD:AF:DP	1/2:0,8,24:0.25,0.75:32
chr2	179634936	rs2306636	C	T	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:136,105:0.44:241
chr2	179635882	rs4894047	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	179636257	rs2291305	T	A	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr2	179637861	rs56142888	C	G	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=1.286;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:43,35:0.45:78
chr2	179639297	rs3816781	C	T	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	179641975	rs12476289	C	T	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.592;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:99,70:0.41:169
chr2	179642425	rs719201	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	179643886	rs2291302	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	179643934	rs2291301	A	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	179644035	rs1552280	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr2	179644160	rs2291308	T	C	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	179644855	rs10497520	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:54,46:0.46:100
chr2	179645731	rs12464703	C	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr2	179647546	rs55863869	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr2	179650701	rs6715406	C	T	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:65,68:0.51:133
chr2	179650954	rs6715901	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	179667090	rs3816849	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	179698844	.	G	A	41	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=1;NR=3;PP=41;QD=18.9428031368;SC=GAAGATAAACGGCGGCACTTT;SbPval=0.09;Source=Platypus;TC=17;TCF=12;TCR=5;TR=4;WE=179698852;WS=179698834;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr2	179702268	rs1032283	A	G	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	179702577	rs3045731	A	AGG	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	179702610	rs2078403	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	179710550	rs17453403	C	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:104,81:0.44:185
chr2	179719966	rs1872203	A	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	179730505	rs150991367	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,70:0.50:140
chr2	179732980	rs10165177	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	179732997	rs10165253	A	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr2	179737144	rs12693170	C	A	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	179749501	rs1016800	A	G	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	179753245	rs7573293	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	179753549	rs1873164	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	179783696	rs12467323	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	179809500	rs9677932	C	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	179825838	rs11303440	TG	T	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	179826241	rs6725028	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr2	179974761	rs2305170	A	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr2	179980070	rs2044479	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr2	179982125	rs3217565	AAGAT	A	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	179988395	rs5836671	T	TA,TAA	889.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.22;ReadPosRankSum=-0.542;SOR=0.660;set=HC	GT:AD:AF:DP	1/2:2,17,25:0.39,0.57:44
chr2	179989039	rs2289992	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr2	179996977	rs17363323	T	C	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=1.438;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:36,27:0.43:63
chr2	179997177	rs3214766	AT	A	168.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	180015941	rs148589684	TA	T	659.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr2	180016141	rs17363449	G	C	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.559;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr2	180036775	rs10497534	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr2	180039068	rs13013868	C	T	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	180047746	rs1446673	G	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr2	180047908	rs6757681	T	C	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr2	180308335	rs10171283	C	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	180383498	rs4567894	C	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	180725481	rs259816	T	C	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	180810180	rs6433817	C	T	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	180810264	rs6433818	A	T	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	180815528	rs2304858	A	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	180823590	rs10497553	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	180835589	rs4894140	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	180835792	rs3768837	T	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	180837722	rs6433820	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	180837806	rs6433821	T	A	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	180843126	rs2367990	C	T	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	180846743	rs3738943	G	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	181851996	rs79974548	TT	GA	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;JOINED;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr2	181854692	rs61080739	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	182344846	rs11412304	G	GT	331.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=1.797;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr2	182350447	rs155102	A	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	182350743	rs155103	A	G	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	182359613	rs165419	G	A	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	182374328	rs3816521	T	A	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr2	182374553	rs2305584	A	T	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	182374567	rs2305583	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	182376546	rs1466109	T	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	182392143	rs56095368	G	C	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	182399638	rs2124443	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	182399685	rs41265949	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	182403792	rs57234957	A	AT	6778.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr2	182403851	rs10180793	G	A	9019.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr2	182794534	rs1051085	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	182926144	rs3754930	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr2	182928555	rs1196161	G	C	5455.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	182981846	rs1882211	G	C	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	182981968	rs1882212	A	G	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.916;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:76,82:0.52:158
chr2	183033020	rs199755981	GA	G	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-0.403;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	183053658	rs3769796	C	G	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:208,178:0.46:386
chr2	183066377	rs72168532	C	CAA,CAAA	2043.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.377;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.132;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.392;QD=30.05;ReadPosRankSum=0.087;SOR=2.024;set=HC	GT:AD:AF:DP	1/2:2,25,41:0.37,0.60:68
chr2	183088584	rs3754929	G	A	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	183106758	rs2568667	T	G	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	183129242	rs10930999	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr2	183584755	rs6729801	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	183593451	rs3832045	AT	A	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	183593697	rs288280	C	T	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:79,67:0.46:146
chr2	183597063	rs288282	T	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.183;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	183597318	rs825660	A	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr2	183608519	.	AT	A	154.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	183608528	rs112020259	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	183616592	rs3098359	C	T	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	183616748	rs3115425	G	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:106,58:0.35:164
chr2	183622319	rs141152570	AATAAT	A	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	183622547	rs288334	T	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	183627504	rs192618	A	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:77,68:0.47:145
chr2	183627619	rs190830	C	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr2	183793383	rs9333279	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	183793398	rs9333280	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	183799558	rs9288088	G	C	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	183827018	rs2271671	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,57:0.97:59
chr2	183851058	rs10185562	C	T	281.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	183859473	rs16823914	T	C	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=2.635;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:60,86:0.59:146
chr2	183960522	rs13399265	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	183988984	rs2705719	C	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	183995742	rs925803	A	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr2	184022015	rs3791249	G	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.23;ReadPosRankSum=0.143;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	184024190	rs3748884	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr2	184024511	rs34967913	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr2	185463815	rs147358574	C	CCT	3847.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.424;QD=21.14;ReadPosRankSum=-3.253;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:14,168:0.92:182
chr2	185800905	rs12476147	A	T	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:79,88:0.53:167
chr2	185801755	rs4667002	A	G	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	185802363	rs12477430	A	G	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:56,72:0.56:128
chr2	185803364	rs3731834	C	G	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:171,212:0.55:383
chr2	186610344	rs11884004	T	G	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	186610388	rs17813736	G	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	186611566	rs6758484	C	A	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr2	186611938	rs12618129	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	186625670	.	TAA	T	696.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr2	186625770	rs7562137	A	G	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	186627943	rs17228441	T	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	186629349	rs1986166	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	186647270	rs140906899	T	TA	468.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	186654592	rs992822	A	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	186655726	rs10931199	G	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	186656657	rs10173807	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	186656840	rs17815052	T	C	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	186656956	rs17229201	T	C	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	186657089	rs17229222	C	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	186658056	rs60029104	G	A	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	186658438	rs10490391	C	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	186658565	rs10490392	G	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	186659359	rs2161036	G	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	186661673	rs55938253	A	G	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	186664473	rs11686997	T	C	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	186664963	rs10931200	C	A	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	186665432	rs36004074	G	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	186665824	rs11695215	A	G	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	186667121	rs7605884	T	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	186670104	rs7576532	A	C	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr2	186670780	rs16827154	T	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	186670979	rs4666689	T	C	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr2	186671357	rs17826534	G	A	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.48;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	186671912	rs1862066	G	A	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	186672527	rs72900086	T	A	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	186678241	rs34138386	A	AT	99.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	186678887	rs2161035	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	186680041	rs2287606	G	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	186696759	rs2302913	C	T	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	186697876	rs1468999	A	G	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	187364811	rs4144786	G	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	187370673	rs11690758	G	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	187455278	rs9333287	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	187487160	rs9333288	G	A	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	187490371	rs2197787	T	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	187490389	rs28633327	G	T	1685.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=49.58;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	187501682	rs56136540	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr2	187503226	rs4667108	T	C	30.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr2	187505486	rs3816375	A	G	41.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	187521260	rs3738919	C	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	187528695	rs55767908	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	187529823	rs201401004	ATT	A,AT	1851.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.481;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.68;ReadPosRankSum=-1.775;SOR=0.489;set=HC	GT:AD:AF:DP	1/2:8,76,27:0.68,0.24:111
chr2	187532010	rs41265951	G	T	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr2	187532417	rs2230616	G	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	187540732	rs3213964	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr2	187541810	rs2887831	T	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr2	187559029	.	A	ACAGCAG,ACAG	5361.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=304;set=Intersection	GT:AF:DP	1/1:0.93:227
chr2	187559222	rs6705757	T	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	187611748	rs2247924	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	187626338	rs13026081	C	T	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:46,65:0.59:111
chr2	187626344	rs61746720	G	A	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-0.172;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:65,46:0.41:111
chr2	187698037	rs7609183	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	187698751	rs7559533	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr2	188216783	rs858744	C	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	188216807	rs858745	T	C	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	188227921	rs698582	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	188245640	rs1511877	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	188250301	rs698577	T	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	188293635	.	AAT	A	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.22;ReadPosRankSum=-1.611;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	188331890	rs111681715	C	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.96;ReadPosRankSum=-0.385;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	188332692	rs8176592	A	G	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr2	188343497	rs7586970	T	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	188348750	.	G	GTA	41	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=2;NR=0;PP=41;QD=27.0;SC=AACAACGCAGGTATATATATA;SbPval=1.0;Source=Platypus;TC=15;TCF=12;TCR=3;TR=2;WE=188348758;WS=188348740;set=Platypus	GT:AD:AF:DP	1/0:13,2:0.13:15
chr2	189448896	rs2048138	A	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	189849773	rs3106796	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr2	189855166	rs13306275	A	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-1.126;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:31,29:0.48:60
chr2	189855674	rs2203601	T	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.427;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	189859434	rs371354802	CT	C	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=1.116;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	189862203	rs3134654	C	T	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	189864582	rs1801184	T	C	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:76,92:0.55:168
chr2	189866199	rs2271682	T	A	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:82,66:0.45:148
chr2	189867205	rs3106801	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr2	189871887	.	TGATAGATA	T,TGATA	48	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=0;MMLQ=25;MQ=63.51;NF=0,0;NR=2,2;PP=43,48;QD=23.5;SC=TATAGATAGATGATAGATAGA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2,2;WE=189871902;WS=189871877;set=Platypus	GT:AF:DP	0/1:1.00:2
chr2	189875421	rs1516446	T	G	6971.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	189899541	rs4666770	T	C	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	189899572	rs7420715	T	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	189901288	.	G	T	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=-0.175;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	189901295	rs12693526	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.57;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	189907937	rs6434312	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	189918337	rs6750027	T	C	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	189918787	rs6738371	C	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	189923104	rs7556733	A	G	2730.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	189923434	rs12989558	A	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	189923630	rs5837121	AT	A	2489.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:30,160:0.84:190
chr2	189925313	rs6414121	G	C	157.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	189925548	rs6414122	T	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	189927506	rs7424947	C	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	189932831	rs2229495	T	C	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	189936687	rs6434317	T	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	189943121	rs5837122	GA	G	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=6.690;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.809;QD=8.41;ReadPosRankSum=0.230;SOR=2.891;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr2	189974958	rs4128539	G	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	189997838	rs62182417	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	190313396	rs6738193	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	190319966	rs5837143	C	CA	479.70	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:5,27:0.84:32
chr2	190319990	rs1224958	A	G	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	190322196	rs10497700	T	C	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	190323530	rs1157910	A	G	5327.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	190327076	rs2304703	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	190327126	rs2304702	C	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	190430177	rs2304704	A	G	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:99,103:0.51:202
chr2	190437482	rs35134106	C	CA	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.579;QD=3.79;ReadPosRankSum=-0.922;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	190443304	rs1439815	C	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr2	190444630	rs1439816	C	G	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	190445076	rs4287798	T	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	190445194	rs11568351	G	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr2	190445284	rs13008848	C	G	1764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=1.560;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:92,91:0.50:183
chr2	190448047	rs987028	T	C	5047.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	190448514	.	T	TAC	177	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=2;MGOF=27;MMLQ=22;MQ=59.2;NF=2;NR=12;PP=177;QD=12.8571428571;SC=CTCTCTCTCATACACACACAC;SbPval=0.62;Source=Platypus;TC=27;TCF=4;TCR=23;TR=14;WE=190448522;WS=190448504;set=Platypus	GT:AD:AF:DP	1/0:13,14:0.52:27
chr2	190448548	rs368151678	CATAT	C	298.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	190448550	rs11887968	T	C	256.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=-0.490;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr2	190448550	.	TAT	CAC	409	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=4;MGOF=19;MMLQ=28;MQ=59.2;NF=4;NR=10;PP=409;QD=33.033419633;SC=CACACACACATATACACAGTA;SbPval=0.74;Source=Platypus;TC=32;TCF=11;TCR=21;TR=14;WE=190448560;WS=190448538;set=Platypus	GT:AD:AF:DP	1/0:18,14:0.44:32
chr2	190448552	rs11887969	T	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.81;ReadPosRankSum=-0.222;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr2	190531426	rs1437880	G	A	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	190541861	rs56090484	G	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	190570001	rs11319823	TA	T	500.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	190593168	rs3067424	ATTTTT	A	288.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr2	190593311	rs1225087	C	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	190595258	rs1225090	G	T	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr2	190602513	rs1225099	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	190603201	rs56352098	T	TA	142.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	190611084	rs13002216	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=-1.545;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	190611414	rs2254166	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	190611459	rs2254167	A	G	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	190617643	rs2243876	A	G	3272.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.112;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.111;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.98;ReadPosRankSum=-0.463;SOR=0.321;set=HC	GT:AD:AF:DP	1/1:1,130:0.99:131
chr2	190636411	rs6942	C	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr2	190640475	rs3816196	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr2	190643257	rs7591929	G	A	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.256;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr2	190647108	rs10168387	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	190670539	rs3214425	T	TA	215.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	190682632	rs3791773	G	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	190708982	rs5743112	C	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr2	190722343	rs735559	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	190788123	rs77427005	G	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr2	191064753	rs6753459	C	T	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.225;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:132,113:0.46:245
chr2	191109448	rs7582209	G	A	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr2	191109533	rs11883568	C	T	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.299;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:92,71:0.44:163
chr2	191114229	rs2244076	T	C	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.12;ReadPosRankSum=0.856;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	191114235	rs2244075	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.12;ReadPosRankSum=0.799;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	191116355	rs3791792	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr2	191117206	rs291402	G	A	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.82;ReadPosRankSum=-0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr2	191159232	rs188339	A	G	265.56	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=-0.960;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr2	191161622	rs1058180	T	C	2739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.431;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:156,144:0.48:300
chr2	191175639	rs36074132	GT	G	1476.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	191184475	rs291466	A	G	4612.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:212,229:0.52:441
chr2	191184524	rs3749022	C	T	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	191208795	rs760307	C	T	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr2	191224981	rs4656	G	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:86,94:0.52:180
chr2	191225122	.	C	T	657.77	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr2	191227235	rs2067421	T	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	191227492	rs972689	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	191231458	rs11544940	G	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr2	191231503	rs10931450	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:94,79:0.46:173
chr2	191235901	rs1882891	A	C	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-3.282;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:66,61:0.48:127
chr2	191301368	rs9646748	A	G	6434.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:255,296:0.54:551
chr2	191334459	rs145257711	A	ATTTTTAT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=2.340;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr2	191354658	rs59123011	C	CCT	1479.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr2	191364708	rs72907168	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:85,58:0.41:143
chr2	191373775	rs6707244	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr2	191375375	rs6712426	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	191379268	rs4586658	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr2	191390126	rs10931458	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr2	191399273	rs187205303	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr2	191399433	rs12693579	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr2	191535311	rs2109957	T	C	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr2	191537793	rs5837195	GT	G	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.109;QD=3.43;ReadPosRankSum=2.369;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	191545821	rs12618075	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	191548681	rs112414896	G	A	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	191552121	.	CAAAAAA	C,CAAA	1865.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.265;QD=30.09;ReadPosRankSum=-0.688;SOR=0.237;set=HC	GT:AD:AF:DP	1/2:1,15,46:0.24,0.74:62
chr2	191746233	rs78219026	T	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr2	191766899	rs3771312	T	G	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.08;ReadPosRankSum=0.674;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr2	191777768	rs11363248	AT	A	182.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	191789206	rs7564529	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr2	191840709	rs17749316	C	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr2	191848312	rs12477076	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	191854423	rs2066797	T	C	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=0.875;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr2	191862398	rs16833157	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	191874667	rs2066802	A	G	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:102,84:0.45:186
chr2	191875035	rs36077929	C	T	2631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=1.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.321;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:163,146:0.47:309
chr2	191922307	rs56816363	CT	C	272.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr2	191922841	rs3024866	G	A	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	191923543	rs3024865	G	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.55;ReadPosRankSum=1.137;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr2	191996518	rs1551443	T	C	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=4.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.209;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:62,57:0.48:119
chr2	192160839	rs4853574	A	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	192160875	rs4853575	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	192161058	rs11397643	G	GT	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	192161103	rs10622945	A	ATTCT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	192225477	.	GTGT	G	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.578;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr2	192247808	rs34460997	A	G	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	192247836	rs4641883	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	192248174	rs79897977	T	A	104.98	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	192250543	rs13000398	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	192250568	rs13026888	T	C	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	192250726	rs13018796	G	A	7148.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	192279327	rs2271767	T	C	7194.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr2	192701393	rs10167187	A	G	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:77,71:0.48:148
chr2	192701407	rs61735649	G	C	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:67,56:0.46:123
chr2	192701453	rs114763644	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr2	192711162	rs4471838	A	C	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	192711385	rs35883486	G	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:120,121:0.50:241
chr2	192820898	rs7606017	T	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	196582816	rs842736	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	196602582	rs75708451	A	AAAT	2155.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	196619105	rs78583300	T	C	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:119,69:0.37:188
chr2	196636662	rs1145939	C	G	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	196663997	rs7567285	T	C	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	196673533	rs13411834	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr2	196681284	rs2280452	A	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	196682630	rs975417	C	A	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	196756535	rs11292337	GA	G	2002.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:9,109:0.92:118
chr2	196762491	.	T	TA	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.920;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.657;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.773;QD=1.23;ReadPosRankSum=-1.546;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr2	196791276	rs1489802	T	G	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	196851911	rs10931715	G	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	196866420	rs6434811	C	T	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	196891449	rs1072600	T	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	196892695	rs62203391	T	C	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:114,122:0.52:236
chr2	196912067	rs4850381	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	196915991	rs10174065	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	196933188	rs13028754	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	196935811	rs12693777	T	C	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	197004439	rs1054537	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	197008529	rs1568368	C	T	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	197010823	rs2271888	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	197021141	rs6712829	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	197021276	rs10931726	T	C	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	197021372	rs12478353	T	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	197065889	rs3795921	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	197065964	rs3820908	C	A	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	197066175	rs4566380	T	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.87;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr2	197106759	rs2045277	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	197118729	rs4850690	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	197122493	rs6731238	T	G	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	197135806	rs4850693	T	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	197171104	rs6729640	G	A	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	197171175	rs4241189	C	T	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	197171183	rs12468199	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.60;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	197172816	rs2305567	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr2	197184321	rs1531111	C	T	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	197504545	rs1879128	C	G	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	197534692	rs7590083	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	197584504	rs2680970	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	197593787	rs2460436	C	T	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	197594203	rs2577580	G	C	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	197595762	rs2680967	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	197758148	rs332299	C	T	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	197777589	rs12693800	C	T	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	197854233	rs144034091	T	TAC	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chr2	197863214	rs1966703	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	197863851	rs4850742	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	197864996	rs6434897	A	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	197866470	rs12478175	T	A	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	197872727	rs57048274	T	TTCTC	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;MQ=60.75;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	197953372	rs146161383	TAAGTC	T	3181.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	197954780	rs4300850	A	G	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr2	197986048	rs2697270	T	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	197989945	rs2579395	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	197990909	rs2918628	G	A	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	198001443	rs2579387	C	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	198011904	rs2249470	G	A	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr2	198257008	rs72912888	C	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	198257652	rs11380582	T	TA	305.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.663;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.56;ReadPosRankSum=1.691;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr2	198257795	rs4685	T	C	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr2	198265173	rs788017	T	A	1023.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=-0.164;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr2	198265526	rs788018	A	G	4727.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr2	198266943	rs788019	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	198267770	rs3217350	G	GAA	1766.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	198281743	rs699318	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	198283305	rs788023	T	C	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	198355135	rs148517124	T	TTG	1145.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.43;QD=36.96;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	198362018	rs8539	T	C	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	198365043	rs1116734	C	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	198380635	rs75909202	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	198508951	rs10497806	G	A	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr2	198511086	rs16866970	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	198643631	rs700655	G	A	5904.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.13;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	198643651	rs72918816	A	G	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr2	198669754	rs770659	G	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	198669871	rs770658	G	C	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	198950240	rs1064213	G	A	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr2	200173684	rs10153730	T	G	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr2	200245245	rs1348813	C	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr2	200246318	rs2305262	C	T	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr2	200298313	rs7596597	A	G	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr2	200625581	rs2346586	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	200677625	rs2030653	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr2	200684249	.	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.806;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=6.854;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.458;QD=1.43;ReadPosRankSum=0.580;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr2	200710706	rs769960	T	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr2	200800493	rs6435039	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	200800572	rs371263004	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.192;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr2	200803931	rs192918495	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.16;ReadPosRankSum=0.459;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	200820505	rs281766	T	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:92,42:0.31:134
chr2	200873144	rs113489455	AATACAAAAAAAACTTG	A	1336.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr2	201253956	rs842823	A	G	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=-0.982;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:102,77:0.43:179
chr2	201254049	rs3820881	G	C	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr2	201254171	rs4674015	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	201277181	rs6706953	T	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:50,33:0.40:83
chr2	201337667	rs6723687	A	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr2	201337806	.	G	GAA	91.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.126;QD=7.06;ReadPosRankSum=-0.674;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	201354935	rs3795969	C	G	4149.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	201371768	rs3739116	G	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr2	201397724	rs1036533	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.983;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr2	201437334	rs12052989	T	C	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.84;ReadPosRankSum=0.629;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:126,88:0.41:214
chr2	201440939	rs66861543	CT	C	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr2	201445314	rs62279328	G	A	201.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=-0.224;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr2	201448116	rs116169039	C	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr2	201448283	rs11448587	G	GT	56.86	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	201451006	rs4470327	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr2	201460104	rs7597590	A	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr2	201464295	rs10179964	T	C	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr2	201466954	rs2248130	C	G	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:88,67:0.43:155
chr2	201468732	rs2293525	C	G	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:116,86:0.43:202
chr2	201469625	rs13406379	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=1.664;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr2	201470233	rs35086177	ATTTT	A	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.260;QD=12.92;ReadPosRankSum=1.552;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr2	201473674	rs2470902	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	201474179	rs17593811	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:68,56:0.45:124
chr2	201485572	rs4672865	A	G	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:42,38:0.47:80
chr2	201485649	rs4672866	T	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	201488758	rs2348021	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr2	201515939	rs868810	T	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	201521472	rs2287011	G	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.08;ReadPosRankSum=-1.732;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr2	201521493	rs79540345	A	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-1.621;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr2	201534136	rs2715907	C	T	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	201534184	.	A	C	47	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=12;HapScore=4;MGOF=12;MMLQ=28;MQ=60.0;NF=2;NR=2;PP=47;QD=20.4428031368;SC=AAAAAAAAAAAAATGTACATA;SbPval=0.32;Source=Platypus;TC=14;TCF=10;TCR=4;TR=4;WE=201534192;WS=201534163;set=Platypus	GT:AD:AF:DP	0/1:10,4:0.29:14
chr2	201534389	rs3731722	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.759;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr2	201541621	rs11678615	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr2	201677454	rs2270281	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	201677791	rs2270280	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	201683695	rs2881880	T	C	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	201686122	rs3815501	T	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	201686666	rs6705053	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	201719258	rs5837758	CA	C	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.693;QD=9.71;ReadPosRankSum=1.794;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr2	201724360	rs12465952	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr2	201729009	.	C	T	838.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr2	201736112	rs11892119	T	C	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:147,133:0.47:280
chr2	201736166	rs7562391	A	C	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:129,108:0.46:237
chr2	201768238	rs7917	C	T	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:148,120:0.45:268
chr2	201785657	rs2307358	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr2	201785837	rs2307362	G	A	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,72:0.44:163
chr2	201881677	rs13405753	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr2	201943801	.	G	T	137.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr2	201950456	rs150160270	A	AAT	939.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=0.368;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr2	201994540	rs10931931	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr2	202006096	rs10190751	G	A	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=0.143;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:73,69:0.49:142
chr2	202025131	rs2518142	G	A	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr2	202025621	rs1594	A	G	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:80,71:0.47:151
chr2	202050677	rs3900115	A	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr2	202070735	rs6712872	A	T	182.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	202082459	rs13006529	T	A	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:96,87:0.48:183
chr2	202122995	rs3769823	A	G	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-1.443;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:72,49:0.40:121
chr2	202151163	rs3769818	A	G	2548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.75;ReadPosRankSum=0.040;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:111,126:0.53:237
chr2	202152162	rs13113	T	A	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr2	202153225	rs700635	C	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr2	202153252	rs700636	A	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr2	202211443	rs1406122	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr2	202215409	rs71022364	C	CAAAACAAAACAAAACAA	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-1.099;QD=18.99;ReadPosRankSum=-0.527;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	202215492	rs13014235	C	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr2	202245244	rs3795966	A	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	202245944	rs3832088	TAA	T	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.072;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.600;QD=18.28;ReadPosRankSum=-0.578;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr2	202245955	rs72937131	A	G	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.977;QD=18.46;ReadPosRankSum=-1.156;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr2	202246034	rs3731709	G	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=0.842;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	202248788	rs7579617	T	C	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr2	202248979	rs7579853	T	A	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=1.903;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:42,34:0.45:76
chr2	202249060	rs2540328	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr2	202252539	rs2244438	G	A	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-1.642;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:68,42:0.38:110
chr2	202252856	rs2540330	T	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	202252873	rs2540331	A	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	202257930	rs3815515	C	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	202259903	rs144631526	AC	A	149.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	202260049	rs2256584	G	A	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr2	202264156	rs13022344	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:124,102:0.45:226
chr2	202264316	rs6732993	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr2	202272032	rs11691865	T	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.40;ReadPosRankSum=0.431;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	202284236	rs113582398	C	CTTAAT	1344.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr2	202285100	rs4507084	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr2	202325632	rs57250433	G	GT	280.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.493;MLEAC=2;MLEAF=1.000;MQ=60.72;MQRankSum=0.605;QD=14.04;ReadPosRankSum=1.830;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr2	202337730	rs1019299	A	G	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr2	202342402	rs12990557	G	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	202342802	rs2243791	T	C	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr2	202344179	rs34469362	GT	G	576.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	202352480	rs72939119	G	A	3362.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:166,167:0.50:333
chr2	202352649	rs2714481	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr2	202357949	rs2714482	A	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	202400768	.	TA	T	907.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr2	202402250	rs3083390	AAC	A	646.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	202410147	rs10931955	C	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	202410300	rs10804117	A	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	202410395	.	G	C	241	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=2;HapScore=2;MGOF=55;MMLQ=23;MQ=59.83;NF=3;NR=12;PP=241;QD=18.3847475031;SC=AATATATATGGGAAAATATTT;SbPval=0.59;Source=Platypus;TC=15;TCF=3;TCR=12;TR=15;WE=202410403;WS=202410385;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	202430428	rs35855277	AT	A	703.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.573;QD=15.64;ReadPosRankSum=-1.200;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,43:0.96:45
chr2	202447009	rs13425990	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	202468136	rs10205247	T	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	202469361	rs12474206	C	T	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	202469472	rs7572583	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	202489109	rs17384203	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	202491995	rs2540450	G	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr2	202501448	rs1208081	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr2	202505740	rs2540424	T	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	202507277	rs2241134	C	T	3221.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:159,159:0.50:318
chr2	202507353	rs2241133	G	C	5396.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:301,261:0.46:562
chr2	202507982	rs6723016	T	C	9472.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr2	202507997	.	G	GC	3372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.544;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=84.948;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.239;QD=9.55;ReadPosRankSum=1.417;SOR=5.042;set=HC	GT:AD:AF:DP	0/1:243,110:0.31:353
chr2	202508005	.	A	C	2831.77	.	AC=1;AF=0.500;AN=2;DP=392;set=Intersection	GT:AD:AF:DP	0/1:257,107:0.29:364
chr2	202508135	rs113186360	C	T	2053.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:141,107:0.43:248
chr2	202509814	rs3754932	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	202512435	rs11894207	G	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr2	202512449	rs11894115	C	T	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=-0.563;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:66,47:0.42:113
chr2	202514201	rs10194353	C	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr2	202523347	rs2597900	C	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr2	202526353	rs12052740	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr2	202526366	rs62193397	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	202528830	rs74887695	A	AT	1741.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr2	202531136	rs17384314	G	C	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr2	202534303	rs145833090	TATAGGAAGAGCTTAA	T	190.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	202538300	rs11375204	G	GA	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chr2	202546113	rs1208073	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	202549626	rs1812933	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr2	202549666	rs1812932	A	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=1.227;QD=12.63;ReadPosRankSum=0.348;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	202550699	rs186378021	G	C	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-1.703;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:86,63:0.42:149
chr2	202555132	rs2287050	T	C	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=0.194;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:55,64:0.54:119
chr2	202557702	rs6725443	C	T	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	202566741	rs7603563	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	202569992	rs3219171	A	T	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	202570232	rs3219170	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	202574825	rs1210940	C	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	202575821	rs3219168	G	A	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	202575907	rs2882231	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	202580370	rs3219167	G	A	3342.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	202598113	rs2276615	C	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	202606639	rs3731703	G	A	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	202608877	rs4673207	C	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	202614632	rs41308828	T	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	202625615	rs3219156	C	T	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	202633725	rs113884822	TA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-2.098;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr2	202688293	rs4675229	A	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	202698422	rs66588345	ATCT	A	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=0.667;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr2	202698436	rs200809750	CTTCT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.294;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr2	202712095	rs917958	A	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	202741064	rs2072504	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr2	202741256	rs4675235	A	T	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	202741269	rs4675236	G	A	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	202939654	rs10221698	T	C	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.018;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:48,66:0.58:114
chr2	202955454	rs1568535	G	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:101,103:0.50:204
chr2	202962310	rs11288166	CT	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.950;QD=6.02;ReadPosRankSum=-0.144;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr2	202964380	rs2882486	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr2	202964528	rs2350722	T	C	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr2	202964986	rs6755174	C	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,24:0.29:82
chr2	202965222	rs6726731	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.12;ReadPosRankSum=-0.750;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:20,21:0.51:41
chr2	202974360	rs12615065	T	G	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-0.445;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:72,59:0.45:131
chr2	202989742	rs56243480	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	202989934	.	C	T	1225.77	.	AC=1;AF=0.500;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	0/1:63,59:0.48:122
chr2	202990653	rs56293728	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr2	202990704	rs56046075	T	C	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	203000717	rs7578906	A	T	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.02;ReadPosRankSum=1.668;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	203000729	rs56806886	A	T	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=1.549;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	203000730	rs9679591	A	T	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.27;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	203000810	rs35537724	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr2	203003066	rs3043926	G	GGTGT,GGT	3935.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/1:0.99:93
chr2	203003085	rs16838883	T	C	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:51,83:0.62:134
chr2	203029951	rs7582695	T	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	203051886	rs6722588	C	T	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	203053044	rs115401595	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr2	203055207	.	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-0.448;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:26,27:0.51:53
chr2	203072693	.	A	G	40	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5129;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=59.88;NF=2;NR=1;PP=40;QD=24.9237375157;SC=CAGCCTCCCAAAGTGCTAGGA;SbPval=0.42;Source=Platypus;TC=6;TCF=5;TCR=1;TR=3;WE=203072701;WS=203072683;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	203079307	rs3769817	T	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	203139738	rs11397579	A	AC	204.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	203378398	rs10714063	CT	C	223.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr2	203378616	rs7575056	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr2	203384776	rs11390605	C	CTT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.602;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr2	203500079	.	AGCG	A	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.695;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.444;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr2	203630102	rs373287818	CT	C	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.327;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr2	203650558	rs145836386	TA	T	350.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	203651278	rs55689177	CA	C	621.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	203651475	rs57934594	A	AT	498.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-1.590;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:5,31:0.86:36
chr2	203661779	rs6704822	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=60.83;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	203680554	rs374333116	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.909;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr2	203690387	rs1344959	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	203693559	rs4675296	C	G	4315.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	203748544	rs34788166	A	AT	1391.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:7,71:0.91:78
chr2	203748594	rs10196719	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	203749392	rs3050865	C	CTTT	218.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	203806867	rs180708468	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr2	203820275	rs3731695	T	C	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	203880992	rs2351524	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	203921270	rs4673241	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	203964456	.	C	CT	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.216;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:95,30:0.24:125
chr2	203996870	rs6748898	A	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	204002809	rs10180815	A	C	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	204036545	rs5837845	C	CT	81.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.58;ReadPosRankSum=-0.566;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr2	204054834	rs62182253	G	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	204054858	.	CA	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.622;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-1.612;QD=6.06;ReadPosRankSum=0.720;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr2	204054882	rs148174619	TACACACACACACACACACAC	T	1895.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.344;QD=39.49;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:1,47:0.98:48
chr2	204062061	rs4675323	A	G	7630.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr2	204090887	rs2351773	C	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	204110748	rs56317341	G	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	204111394	rs13015873	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	204111398	rs10586509	GTTAA	G	1202.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	204111443	rs6435176	A	G	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	204111705	rs6751894	T	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	204116660	rs3731694	A	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	204116690	rs2043449	C	T	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	204116887	rs2351771	T	G	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	204154552	rs1048013	C	T	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	204154686	rs10170454	A	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	204206977	rs4675333	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	204216255	.	G	GTT	191.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=0.976;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr2	204261723	rs3731652	G	C	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr2	204305093	rs3814365	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.40;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	204322298	rs2469953	T	C	3338.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.02;ReadPosRankSum=-0.549;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:2,137:0.99:139
chr2	204355822	rs2469962	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	204732714	rs231775	A	G	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=2.103;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:66,62:0.48:128
chr2	204732850	rs231776	A	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	204821494	rs4264550	C	T	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr2	204822670	rs5837889	A	AT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=4.75;ReadPosRankSum=-0.218;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr2	204824178	rs146016344	AGT	A	1425.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.364;QD=34.77;ReadPosRankSum=-1.142;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:1,40:0.98:41
chr2	204824200	rs78281070	T	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.058;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.000;QD=10.84;ReadPosRankSum=1.283;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:25,26:0.51:51
chr2	204824283	rs10172036	T	G	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	204824324	rs10183087	A	C	2411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.735;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=5.823;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.119;QD=11.82;ReadPosRankSum=-1.139;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:93,111:0.54:204
chr2	205912210	rs7563474	C	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	205912403	rs1510765	T	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	205969023	rs2289024	A	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	205969220	rs2289025	G	A	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:123,74:0.38:197
chr2	205978113	rs368750104	CA	C	814.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.617;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-0.526;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr2	205978114	rs1848948	A	G	426.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.901;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.563;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr2	205978117	rs71032443	G	GGTGT	413.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.523;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=1.526;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr2	205978118	rs5837952	GT	G	832.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.240;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.51;ReadPosRankSum=-1.522;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	206036918	rs736320	C	T	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	206050355	rs62172732	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	206166580	rs11686273	G	A	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	206364487	rs11687914	T	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	206364791	rs11683289	C	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	206418032	rs6730102	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	206481612	rs35710107	TGA	T	613.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr2	206562250	rs849558	C	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	206581033	rs849541	G	A	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	206590879	rs73064192	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:56,53:0.49:109
chr2	206592534	rs2241157	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	206608039	rs849568	T	C	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	206614646	rs10932123	T	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	206630073	rs35659576	A	AAC	1416.86	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:5,48:0.91:53
chr2	206641239	.	TCGCA	T	5449.73	.	AC=1;AF=0.500;AN=2;DP=275;set=Intersection	GT:AD:AF:DP	0/1:121,144:0.54:265
chr2	206641245	rs200483574	T	TA	5484.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:111,144:0.56:255
chr2	206874339	rs817991	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr2	206884595	rs11366043	AT	A	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr2	206911191	rs34828561	C	CA	763.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	206911228	rs2909111	G	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.207;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:42,31:0.42:73
chr2	206921451	rs818009	G	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	206927850	rs17286674	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	207003438	rs4147729	TA	T	71.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	207006825	rs4147718	C	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr2	207008675	rs35409448	C	CT	1828.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:110,58:0.35:168
chr2	207008763	rs1127566	C	A	2845.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:178,144:0.45:322
chr2	207023595	rs4147709	C	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr2	207023620	rs4147708	A	G	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	207024886	rs113729178	G	GC	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=32.09;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	207025444	rs11689362	T	C	3600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.271;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:175,178:0.50:353
chr2	207027407	rs35430253	C	CT	782.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	207041053	rs3732083	T	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr2	207169731	rs10932150	G	A	6771.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr2	207172627	rs7582864	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	207174316	rs3732084	T	C	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	207345826	rs3213811	G	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	207452151	rs3832131	GT	G	271.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	207472573	rs1991537	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	207472683	rs78458117	C	CTA	1237.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,34:0.44:78
chr2	207582852	rs16838691	A	G	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	207583169	rs16838693	T	C	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-2.050;SOR=0.190;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr2	207610454	.	C	CTT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=28.621;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=-0.645;QD=2.55;ReadPosRankSum=-0.597;SOR=2.198;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	207610948	rs114770926	C	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr2	207621759	rs1990849	A	G	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr2	207625567	rs1862087	T	C	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=2.394;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr2	207629795	rs16838834	T	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	207629821	rs28365798	T	TGCAA	748.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	207629846	rs28365797	A	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr2	207629904	rs3828294	G	A	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:77,101:0.57:178
chr2	207653653	rs76270461	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr2	207814273	rs75295922	C	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr2	207820276	rs13420911	G	A	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	207824384	rs11903403	T	G	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	207824548	rs1453168	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	207824650	rs1453169	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	207825656	rs13397039	A	T	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	207833760	rs73053220	A	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	207833848	rs7582092	A	G	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	207833983	rs7582305	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:65,46:0.41:111
chr2	207946141	rs2287507	A	G	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	207946164	rs2287506	T	C	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	207974818	rs2244923	C	T	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:70,59:0.46:129
chr2	207988613	rs2700166	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	207998800	rs2284934	C	T	8266.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.24;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr2	207998878	rs35538720	A	ATTTT	1774.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.828;QD=26.49;ReadPosRankSum=0.906;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:6,61:0.91:67
chr2	207999021	rs2284933	G	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	208031796	rs2037893	C	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	208031992	rs1269424	T	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr2	208133995	rs10173558	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	208432346	rs3730276	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr2	208447642	rs12478868	A	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=1.450;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:50,41:0.45:91
chr2	208461621	rs57116025	TC	T	138.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	208477852	rs2551949	G	A	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr2	208477956	rs2709416	C	T	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr2	208478055	rs17520056	A	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,73:0.50:147
chr2	208489101	rs4234080	C	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr2	208611699	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.939;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr2	208633413	rs4675711	T	C	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	208693261	rs720632	C	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,51:0.41:123
chr2	208693307	rs720631	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr2	208717440	rs10932211	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:44,62:0.58:106
chr2	208794658	.	G	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.726;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:18,23:0.56:41
chr2	208811097	rs10932215	C	T	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.558;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:62,70:0.53:132
chr2	208841964	rs4441448	A	G	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	208986385	rs2305429	A	G	3722.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr2	208986637	rs2305430	T	C	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	208989037	rs2242074	A	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr2	209007559	rs796287	T	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	209010558	rs2854723	A	G	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr2	209010891	rs2289917	G	A	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr2	209030330	rs34111482	G	GT	148.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	209030572	rs6721025	A	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	209033138	rs7589065	C	T	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	209033173	rs7562540	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.59;QD=24.69;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	209035485	rs6435420	T	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	209035658	rs6748431	C	T	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr2	209035849	rs4292037	A	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	209036605	rs10932244	T	C	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	209036712	rs10804166	T	C	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr2	209036778	rs6435421	A	G	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr2	209046162	rs6435425	G	A	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.98;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	209046162	.	GTA	ATG	423	.	AC=2;AF=1.00;AN=2;BRF=0.06;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=8;PP=423;QD=52.9408749847;SC=AATAAAATTGGTATGATTGTT;SbPval=0.6;Source=Platypus;TC=10;TCF=1;TCR=9;TR=9;WE=209046172;WS=209046152;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr2	209046164	rs6435426	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	209049840	rs10804167	C	T	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	209101905	rs57383668	GA	G	646.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	209110270	.	C	CTTT	44	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=0.9998;HP=21;HapScore=2;MGOF=10;MMLQ=16;MQ=61.07;NF=0;NR=2;PP=44;QD=23.5;SC=TGTCAAACTTCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=209110278;WS=209110260;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr2	209138946	rs6705163	C	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	209163556	rs7569723	C	T	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr2	209168853	rs893256	C	T	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr2	209176807	rs12624141	T	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	209184844	rs934712	A	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	209184980	rs10932258	G	A	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	209184999	rs10932259	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	209189912	rs893255	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	209190330	rs2363468	T	C	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	209190519	rs893254	A	T	8381.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	209190528	rs893253	C	G	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	209191082	rs1529979	C	A	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	209191099	rs1529978	T	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	209194696	rs1437414	G	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	209195099	rs1866045	G	A	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	209195133	rs12694109	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	209195491	rs112938452	G	GAGA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	209199945	rs2363469	A	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr2	209201054	rs6744236	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	209201739	rs7596571	T	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	209203122	rs4675756	C	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	209204714	rs2289171	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:66,41:0.38:107
chr2	209209827	rs2304544	G	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	209209997	rs2043718	C	T	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	209212707	rs2304545	G	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	209214770	rs2118297	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	209215448	rs994696	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	209215586	rs994697	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	209219190	rs6435453	A	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	209220157	rs10208191	G	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	209224874	rs11357589	CA	C	1813.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	209271751	rs374871570	C	T	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-2.359;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:40,56:0.58:96
chr2	209271796	rs141998745	G	A	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:63,45:0.42:108
chr2	209293168	rs962595	C	T	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	209315573	rs1370371	G	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr2	209345944	rs34570534	CT	C	484.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=1.426;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:17,48:0.74:65
chr2	209346020	rs61511423	T	TGCAACCTC	1343.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	209353607	rs6726003	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	209353656	rs11335842	GT	G	859.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr2	209358027	rs3820900	C	T	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr2	210517785	rs2254169	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	210594540	rs4673486	A	G	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr2	210594717	rs11389149	C	CT	881.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	210594768	rs7594601	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	210659434	rs7603924	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	210678691	rs2159745	T	G	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	210682603	rs182186415	C	G	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:126,104:0.45:230
chr2	210745681	rs2370838	C	A	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	210786137	rs9288415	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	210838004	rs141804658	TTC	T	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.299;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:80,13:0.14:93
chr2	210843383	rs2075117	G	A	1813.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:85,89:0.51:174
chr2	210874246	rs3738934	T	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	210880893	rs7570090	C	T	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	210882456	rs2243769	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	210882677	rs2723213	C	T	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	210889759	rs6435550	A	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	211060050	rs2286963	T	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	211068103	.	G	GTTAAACATAACA	668.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr2	211068107	rs377085604	C	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.207;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	211068109	.	GGT	G	550.73	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	211069438	rs263677	G	A	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	211074909	rs3764913	T	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	211163063	rs150329321	TAC	T	414.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr2	211302627	rs41272663	C	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr2	211319824	rs2287432	T	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr2	211320041	rs59908560	G	GAAA	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;QD=29.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	211340937	rs3214410	A	AT	237.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	211341156	rs2287418	C	G	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;MQ=60.33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr2	211341204	rs56033100	G	GC	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	211342502	rs17552879	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:110,79:0.42:189
chr2	211421452	rs3835047	A	ATCT	2918.73	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:80,78:0.49:158
chr2	211452598	rs149496892	TAC	T	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	211456637	rs1047883	A	G	3487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=2.191;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:147,94:0.39:241
chr2	211456637	.	ACC	GCT	2245	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=4;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=46;NR=39;PP=2245;QD=27.0407985278;SC=CTTGGACAACACCCTCCCTGC;SbPval=0.6;Source=Platypus;TC=215;TCF=114;TCR=101;TR=85;WE=211456647;WS=211456627;set=Platypus	GT:AD:AF:DP	0/1:130,85:0.40:215
chr2	211456639	rs2229589	C	T	3487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=1.950;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:147,96:0.40:243
chr2	211470021	.	T	G	1313.77	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:75,69:0.48:144
chr2	211481257	rs2287599	C	G	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:153,111:0.42:264
chr2	211513118	rs4673540	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	211515058	rs3213784	A	T	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr2	211521227	rs58225253	CT	C	1013.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.471;QD=12.36;ReadPosRankSum=1.776;SOR=0.589;set=HC	GT:AD:AF:DP	1/1:11,71:0.87:82
chr2	211527827	rs5838215	GT	G	3129.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.450;QD=15.49;ReadPosRankSum=1.581;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:19,183:0.91:202
chr2	211532800	rs3217217	A	ATG,ATGTGTG	424.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/2:0.29,0.64:14
chr2	211533070	rs10932347	A	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	212251864	rs3748962	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	212252809	rs934607	G	A	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	212488870	rs3215298	G	GC	2168.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	212543924	rs4673628	A	G	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=0.789;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:31,38:0.55:69
chr2	212544024	rs10169970	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr2	212544026	rs67647157	CT	C	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	212569879	rs10221746	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	212569924	rs10221615	G	A	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	212569983	rs6723705	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr2	212578379	.	T	TA	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.013;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr2	212587321	rs13002712	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr2	212589986	rs35778743	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=2.126;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr2	212615516	rs6757068	T	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	212652612	rs150248787	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr2	213291199	rs10166403	A	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-0.731;QD=5.99;ReadPosRankSum=0.614;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr2	213291226	rs34480397	C	CTCTT	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	213403091	rs73989053	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr2	213790978	rs62186510	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr2	213872853	rs147995454	TACA	T	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=2.756;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr2	213872868	rs76705042	A	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.21;ReadPosRankSum=2.592;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	213886454	rs2291241	A	T	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	213886647	rs141472671	A	ATTTTATCT	867.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr2	213914343	rs2165444	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	214012405	rs6738070	A	C	4701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.27;ReadPosRankSum=-0.739;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:22,210:0.91:232
chr2	214012508	rs6709554	C	T	1904.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:99,95:0.49:194
chr2	214142631	rs13000409	G	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,35:0.35:99
chr2	214228792	rs12469417	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	214228959	rs4146048	G	A	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	214233812	rs6752347	C	A	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	214261534	rs339815	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr2	214727150	rs2042790	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr2	214727221	rs2042791	A	C	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=0.216;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:69,69:0.50:138
chr2	214727367	rs2042792	C	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr2	214794743	rs12623569	A	C	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:103,109:0.51:212
chr2	215013777	rs5838412	GTA	G	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.891;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=-0.978;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	215013787	rs2372225	A	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.512;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr2	215013801	.	G	GTATA	882.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=-0.102;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr2	215102929	rs1912207	T	A	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr2	215593261	rs33960630	C	CTT	326.14	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr2	215595512	rs12614960	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	215595645	rs16852600	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	215595765	rs6435849	C	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	215595861	rs34664471	G	GA	378.74	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr2	215595872	rs28685662	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	215609693	rs6435856	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr2	215632124	rs5031008	ATT	A	878.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr2	215632155	rs5031009	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr2	215632192	rs5031011	G	A	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,66:0.52:126
chr2	215632255	rs2070094	C	T	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.538;QD=8.92;ReadPosRankSum=0.137;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:99,85:0.46:184
chr2	215632256	rs2070093	A	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=33.97;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	215634055	rs6704780	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.907;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr2	215645464	rs2229571	C	G	6566.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr2	215674090	rs35933323	T	G	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	215674224	rs1048108	G	A	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr2	215674323	rs1129804	C	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	215674341	rs17489363	A	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	215674371	rs34732883	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	215797332	rs17426207	C	T	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-0.940;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:49,44:0.47:93
chr2	215797527	rs10532785	AATTC	A	853.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr2	215802112	rs3738884	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	215809597	.	G	GTA	75	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=75;QD=43.0;SC=TTGTATGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=2;WE=215809605;WS=215809587;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr2	215812297	rs2274412	G	A	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr2	215820013	rs10498027	G	A	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:158,128:0.45:286
chr2	215821580	rs17492577	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr2	215833415	rs4673925	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr2	215833622	rs6756540	G	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr2	215840414	rs17493319	C	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr2	215840829	rs7594021	A	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr2	215847629	rs62204080	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr2	215848034	rs7608150	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	215851246	rs7559069	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	215855780	rs4533467	G	A	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,41:0.46:90
chr2	215862383	rs1980844	G	A	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr2	215862633	rs1326748	C	G	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	215872334	rs940279	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	215874965	rs6733264	G	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	215875251	rs1409607	A	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	215876166	rs7560008	A	T	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	215876589	rs11388414	G	GT	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.182;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:40,36:0.47:76
chr2	215878240	rs7594353	G	A	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=1.651;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	215878246	rs10192100	C	T	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	215880108	rs6753310	C	T	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	215890312	rs2177423	A	G	65.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	215890324	.	G	GT	52	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=10;HapScore=4;MGOF=161;MMLQ=28;MQ=57.0;NF=3;NR=1;PP=52;QD=16.0;SC=AAGTGTTAAGGTTTTTTTTTT;SbPval=0.68;Source=Platypus;TC=4;TCF=3;TCR=1;TR=4;WE=215890332;WS=215890305;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	215890352	rs5838480	GTT	G	288.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;MQRankSum=0.770;QD=24.06;ReadPosRankSum=-0.442;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr2	215901592	rs1474331	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr2	215901774	rs17501837	C	T	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=-1.042;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:107,83:0.44:190
chr2	215919166	rs10194592	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr2	215928677	rs12694351	G	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr2	215928972	rs1523721	G	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	215940242	rs6711179	T	C	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	215976231	rs2948978	A	T	195.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	216176780	rs28366034	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr2	216176824	rs28366035	C	T	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	216182769	rs4672766	A	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	216190654	rs7563206	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr2	216190691	rs2177737	A	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	216191515	rs6751557	C	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	216198049	rs10179873	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr2	216211712	rs10932609	A	T	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr2	216212279	rs4673992	G	C	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	216213689	rs61469558	A	T	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=2.991;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	216214492	rs10498036	T	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	216226642	rs13394662	A	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.270;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:12,15:0.56:27
chr2	216229850	rs7579867	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:46,64:0.58:110
chr2	216232556	rs7568287	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr2	216235089	rs1250209	C	T	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr2	216236532	rs10804241	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr2	216237929	rs2289199	A	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr2	216240126	rs3214672	AAC	A	381.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr2	216242917	rs1132741	T	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:91,74:0.45:165
chr2	216243832	rs1250204	T	C	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	216248305	rs1250203	G	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	216248707	rs35639338	TAA	T	958.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr2	216249587	rs13652	C	T	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	216249819	rs1250201	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	216251697	rs35343655	G	A	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	216253039	rs1250215	G	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr2	216256615	rs6709607	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	216262621	rs6725958	A	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	216263926	rs2692224	C	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	216263938	rs3832178	C	CT	1443.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	216269031	rs7575551	G	T	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.40;ReadPosRankSum=-0.470;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr2	216269033	rs72943909	T	G	875.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.04;ReadPosRankSum=0.502;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:19,27:0.59:46
chr2	216272819	rs7570208	C	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr2	216272900	rs2577301	T	G	8095.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.30;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr2	216272900	.	TGTCAGGA	GGTCAGGA,GGTCAGGT	1490	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=23;MQ=59.93;NF=114,62;NR=80,47;PP=1002,1490;QD=5.34418150798;SC=TCCACAGTCGTGTCAGGAGGG;SbPval=0.53;Source=Platypus;TC=194;TCF=114;TCR=80;TR=194,109;WE=216272915;WS=216272890;set=Platypus	GT:AF:DP	0/1:1.00:194
chr2	216272907	rs7596677	A	T	2613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=0.665;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:103,126:0.55:229
chr2	216274853	rs5838511	AAC	A	1242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.679;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:71,53:0.43:124
chr2	216283958	rs3796123	T	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:101,92:0.48:193
chr2	216288795	rs11693652	G	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr2	216295312	rs1250241	T	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	216295337	rs7586990	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr2	216296730	rs113868976	A	AT	1194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.108;QD=7.03;ReadPosRankSum=-0.120;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:87,83:0.49:170
chr2	216296860	rs7567647	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	216298084	rs2289202	G	A	3107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.286;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:106,147:0.58:253
chr2	216298230	rs10202709	C	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,44:0.61:72
chr2	216299281	rs1250246	A	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	216299550	rs2577290	G	A	4336.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.991;QD=19.45;ReadPosRankSum=0.899;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:110,113:0.51:223
chr2	216299550	.	GC	AA	2904	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=23;MQ=60.18;NF=33;NR=51;PP=2904;QD=20;SC=ACAACCGGCTGCAAATAATTG;SbPval=0.52;Source=Platypus;TC=171;TCF=67;TCR=104;TR=84;WE=216299559;WS=216299540;set=Platypus	GT:AD:AF:DP	1/0:87,84:0.49:171
chr2	216299551	rs2692234	C	A	4336.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.964;QD=19.71;ReadPosRankSum=0.570;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:107,113:0.51:220
chr2	216299571	rs10648691	T	TTAC	6090.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	216299629	rs1250247	C	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	216300482	rs1250259	T	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	216810468	rs62183184	A	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr2	216861273	rs2303845	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	216878008	rs1864253	C	G	10048.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr2	216908679	rs2303842	C	T	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	217012901	rs207906	A	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	217024697	rs58550995	CT	C	349.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.49;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	217123958	rs169616	T	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	217280261	rs5838583	GT	G	113.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=1.929;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr2	217281150	rs3214962	AC	A	916.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	217297350	rs2271334	G	A	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	217311630	rs284550	G	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	217329184	rs2129119	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=1.989;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr2	217329432	rs34170201	C	CA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.861;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr2	217342000	rs284523	T	C	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-0.165;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr2	217342063	rs205980	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	217342773	rs284524	T	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr2	217343136	rs5838586	G	GC	357.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	217364539	rs284572	C	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,30:0.31:97
chr2	217498290	rs5838590	C	CGCCGCTGCT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=62.86;MQRankSum=-3.083;QD=5.36;ReadPosRankSum=1.255;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	217498296	.	T	TGCTGCCGCC	322.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr2	217541582	rs2160549	T	C	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr2	217543728	rs11575194	G	A	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:152,141:0.48:293
chr2	217736131	rs2241191	G	A	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr2	218577575	rs1835333	T	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	218604247	rs4672848	A	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.524;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	218604356	rs4294980	G	A	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	218672657	rs2241451	C	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	218674697	rs918949	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	218675144	rs918950	G	A	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	218675199	rs1035672	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	218679599	rs2059408	T	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	218683154	rs2571445	A	G	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	218712918	rs3796031	C	T	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:182,199:0.52:381
chr2	218713469	rs3815849	G	A	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:127,112:0.47:239
chr2	218745685	rs10199795	G	A	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:134,132:0.50:266
chr2	218750453	rs35040165	A	AG	1210.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr2	218758070	rs56217129	C	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	218758123	rs141673800	G	GCA	1476.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr2	218758200	rs61745748	T	G	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:69,62:0.47:131
chr2	218768422	rs3791936	T	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:66,51:0.44:117
chr2	218770003	rs7600493	G	A	4803.77	.	AC=1;AF=0.500;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	0/1:308,245:0.44:553
chr2	218801767	rs4674232	C	T	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	218941095	rs6759925	C	G	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.56;ReadPosRankSum=0.414;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	219000310	rs2230054	C	T	11391.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr2	219082119	rs2271541	G	T	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:97,101:0.51:198
chr2	219082330	rs12694432	A	G	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:110,96:0.47:206
chr2	219093278	rs60528331	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr2	219099260	rs1018288	G	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	219099484	rs10932765	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr2	219103580	rs10169718	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,39:0.49:80
chr2	219104316	rs34974153	AT	A	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.350;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.534;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr2	219117482	rs35271699	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr2	219128506	rs2292549	C	T	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	219138940	rs4791	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:68,39:0.36:107
chr2	219138951	.	T	C	697.77	.	AC=1;AF=0.500;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr2	219139573	rs6734242	G	A	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	219140288	rs2292550	G	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-1.428;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:45,58:0.56:103
chr2	219142023	rs2168703	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	219142491	rs2271543	C	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr2	219142492	rs2168704	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr2	219142594	rs3817266	C	T	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:164,183:0.53:347
chr2	219142773	rs6707559	C	T	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	219143229	rs2292551	G	A	3296.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:168,164:0.49:332
chr2	219143327	rs2292552	T	C	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:126,116:0.48:242
chr2	219144089	rs12987180	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr2	219144149	rs12987219	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr2	219144815	rs2045435	T	C	14187.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr2	219146607	rs7585702	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.594;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr2	219146803	rs2292553	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=0.856;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr2	219146868	rs2292554	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	219146882	rs2292555	G	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	219153982	rs34353396	T	C	216.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	219153983	rs10707182	GA	G	860.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	219187901	rs1870125	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	219206919	rs3816562	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr2	219209393	rs1350336	A	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr2	219221846	rs4324314	G	A	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:139,179:0.56:318
chr2	219221982	.	G	GTCTCTCTCTCTCTC	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=14.40;ReadPosRankSum=0.000;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	219227756	rs6723716	T	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	219231807	rs3845833	C	T	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr2	219232354	rs7608923	C	A	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:64,44:0.41:108
chr2	219249013	rs2276631	C	T	1569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.734;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:86,77:0.47:163
chr2	219249771	rs6734861	C	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr2	219250003	rs3731865	G	C	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:179,183:0.51:362
chr2	219251176	rs11405187	G	GA	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=10.965;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-1.441;QD=6.20;ReadPosRankSum=-0.439;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr2	219252377	rs2290708	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr2	219254622	rs2695342	A	G	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr2	219254842	rs3816560	T	C	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr2	219257688	rs2045433	T	C	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr2	219259270	rs2279015	G	A	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr2	219263277	rs2695344	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	219265094	rs2579958	T	C	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr2	219265136	rs11463820	T	TC	5892.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr2	219266204	rs2252235	T	C	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,73:0.45:162
chr2	219266423	rs2227251	C	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,83:0.50:166
chr2	219267781	rs2227255	C	T	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:133,131:0.50:264
chr2	219267913	rs2227258	A	G	5364.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:242,259:0.52:501
chr2	219288382	rs4672893	A	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr2	219288899	rs3731866	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr2	219294258	rs6720403	A	C	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr2	219296545	rs17572485	G	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	219296837	rs35716557	C	T	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr2	219319657	rs6436058	A	G	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	219320233	rs5838698	GA	G	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.060;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-0.429;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr2	219324423	rs199821589	AGTG	A	1258.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr2	219327898	.	AACACACACACACACACACAC	A	893.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=42.56;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	219341717	.	GA	G	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.681;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr2	219350358	.	C	CA	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=6.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.737;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr2	219447912	rs2952825	A	G	2931.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.686;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.364;QD=29.61;ReadPosRankSum=2.233;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:7,92:0.93:99
chr2	219447952	.	GTGTGTCTCTCTCTCTC	G	1437	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=1;MGOF=50;MMLQ=28;MQ=53.39;NF=1;NR=38;PP=1437;QD=36.9230769231;SC=GTGTGTGTGTGTGTGTCTCTC;SbPval=0.55;Source=Platypus;TC=48;TCF=1;TCR=47;TR=39;WE=219447975;WS=219447942;set=Platypus	GT:AD:AF:DP	1/0:9,39:0.81:48
chr2	219501314	rs150976760	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr2	219508372	rs3770213	A	T	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	219513782	rs4674322	T	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:65,84:0.56:149
chr2	219525582	rs6722185	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219525825	.	G	A	7208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=-0.938;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:226,190:0.46:416
chr2	219525825	.	GGC	AGA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=87;NR=83;PP=2944;QD=20;SC=TGTCCAACTGGGCCTGGTGGC;SbPval=0.46;Source=Platypus;TC=392;TCF=209;TCR=183;TR=170;WE=219525835;WS=219525815;set=Platypus	GT:AD:AF:DP	1/0:222,170:0.43:392
chr2	219525827	.	C	A	7208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=417;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.37;ReadPosRankSum=0.020;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:227,188:0.45:415
chr2	219527005	rs2303561	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	219529348	rs2243911	C	T	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	219532903	rs2556384	C	T	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	219532903	.	CGG	TGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=82;NR=81;PP=2947;QD=20;SC=ACTGCTGAAGCGGTCCACCCC;SbPval=0.5;Source=Platypus;TC=173;TCF=86;TCR=87;TR=163;WE=219532913;WS=219532893;set=Platypus	GT:AD:AF:DP	1/1:10,163:0.94:173
chr2	219532905	rs2556385	G	A	8905.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	219541056	rs2556388	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	219545309	rs2303565	T	C	14739.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr2	219555262	rs1344642	G	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	219558193	rs55996799	C	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	219558821	.	G	A	160.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr2	219562675	rs1863704	G	A	6416.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr2	219602499	rs3731877	G	C	5201.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	219602819	rs3731876	G	A	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	219605118	rs7562426	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	219609776	rs2272191	G	A	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	219609995	rs2272190	G	C	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	219610322	rs2272189	G	A	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	219610433	rs586194	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	219612282	rs2272188	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	219616610	.	C	CTTTT	1211.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.62;ReadPosRankSum=1.735;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr2	219616627	.	C	CTTT	1160.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.03;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	219616633	rs59713184	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.99;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	219616681	rs6708650	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	219618237	rs6436073	A	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	219618497	rs6757772	T	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	219618708	rs55900247	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr2	219691566	rs1467320	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	219691801	rs33985460	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=2.426;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr2	219692527	rs11385903	G	GC	5346.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr2	219692790	rs5838710	A	AG	4189.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	219696014	rs650898	G	A	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr2	219892233	rs61749573	T	A	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr2	219903258	rs6736922	T	G	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	219903723	rs4674354	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	219903787	rs4672910	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	219906066	rs11674400	C	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	219920037	rs394452	A	G	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr2	219920412	rs3731881	A	G	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr2	219922073	rs34694069	G	GC	2964.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	219923410	rs71974827	G	GAGA	6067.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	219941063	rs897477	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	220012576	rs7585742	G	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr2	220022176	rs6436120	C	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	220022435	rs2030452	G	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	220023196	rs2293069	A	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	220028900	rs6753739	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr2	220033830	rs3795986	A	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:59,63:0.52:122
chr2	220033956	rs6436121	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr2	220034497	rs142326026	C	CCA	3629.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:120,111:0.48:231
chr2	220037393	rs4674361	A	G	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr2	220037666	rs1127102	A	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:109,85:0.44:194
chr2	220037756	rs1043160	A	G	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:132,113:0.46:245
chr2	220040216	rs368784782	CA	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-0.772;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:62,18:0.23:80
chr2	220040330	rs1127101	A	G	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=1.962;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:83,85:0.51:168
chr2	220041091	rs6436123	G	A	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:41,44:0.52:85
chr2	220041433	rs6436124	C	A	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr2	220041455	rs6436125	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	220044630	.	T	C	222.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr2	220045035	rs7577690	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,27:0.48:56
chr2	220046349	rs2272017	G	C	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:75,74:0.50:149
chr2	220046975	rs3731900	C	A	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:205,152:0.43:357
chr2	220047393	rs3731901	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr2	220071803	rs6714820	C	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-0.400;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:61,38:0.38:99
chr2	220071879	rs66491679	TG	T	152.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr2	220072766	rs4674366	G	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	220072852	rs4674367	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr2	220074458	rs140892945	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.60;ReadPosRankSum=-1.744;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr2	220078496	rs2139823	T	C	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	220082365	.	C	CA	289.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=5.133;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.054;SOR=1.670;set=HC	GT:AD:AF:DP	0/1:23,24:0.51:47
chr2	220083279	rs1109866	C	T	1936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-0.751;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:72,93:0.56:165
chr2	220083453	rs1109867	G	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	220085845	rs2276633	A	G	9368.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr2	220087354	rs72955435	A	C	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:145,138:0.49:283
chr2	220087441	rs2276635	T	C	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:143,157:0.52:300
chr2	220088248	rs908196	A	G	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr2	220089590	rs3216709	T	TG	644.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr2	220089685	rs2276637	G	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	220090147	rs55842930	T	C	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:76,74:0.49:150
chr2	220091765	rs72955440	A	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr2	220096903	rs3817424	A	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:55,47:0.46:102
chr2	220098287	rs72955447	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	220100683	rs2293078	C	G	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:158,207:0.57:365
chr2	220100922	rs56927225	A	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr2	220101783	rs72955452	C	T	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr2	220108300	rs11552796	T	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr2	220113242	rs7601549	T	G	12291.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr2	220113384	rs8447	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr2	220116509	rs45488900	G	T	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr2	220117458	rs1024131	G	A	3698.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:175,178:0.50:353
chr2	220118531	rs939574	G	C	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr2	220131407	.	G	A	499.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr2	220135208	rs2891733	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr2	220136155	rs7594971	T	C	17455.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr2	220136351	rs3731892	G	A	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;MQ=59.76;set=Intersection	GT:AD:AF:DP	0/1:237,196:0.45:433
chr2	220136371	rs3731894	T	C	3897.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;MQ=59.72;set=Intersection	GT:AD:AF:DP	0/1:218,188:0.46:406
chr2	220145286	rs2276638	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr2	220146402	rs3731896	C	T	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr2	220146609	rs3832110	C	CG	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	220146651	rs3731897	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr2	220147732	rs2276639	C	T	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr2	220150567	rs72955484	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	220166611	rs115941911	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	220168607	rs2271593	C	T	2827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=2.041;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:59,75:0.56:134
chr2	220168616	rs2271594	C	T	2724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.90;ReadPosRankSum=1.107;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:50,69:0.58:119
chr2	220194247	rs3832109	A	AATT	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr2	220195446	rs6707009	C	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.492;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=0.152;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	220197207	rs2048737	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr2	220197321	rs2385405	C	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,73:0.58:125
chr2	220197388	rs2385404	C	A	1447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=23.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=1.676;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:73,74:0.50:147
chr2	220197424	rs2385403	C	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=34.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=0.064;SOR=2.528;set=HC	GT:AD:AF:DP	0/1:62,60:0.49:122
chr2	220197492	rs2385402	C	G	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:72,39:0.35:111
chr2	220197835	rs139479208	ATAATATTATATATTAT	A	688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-0.784;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:28,24:0.46:52
chr2	220197929	rs368227495	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.128;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.481;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr2	220239534	rs3731904	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	220239561	rs3731905	C	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	220246218	rs6436148	T	C	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	220249299	rs5838737	C	CT	2246.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:3,99:0.97:102
chr2	220249329	rs2002892	C	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	220250147	rs907679	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	220250322	rs878437	C	A	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr2	220250826	rs2271456	G	A	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	220250897	rs11352428	AG	A	965.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	220251178	rs2271457	T	C	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	220251208	rs1040009	T	C	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:61,60:0.50:121
chr2	220252287	rs138394024	CTCG	C	5606.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	220264412	rs13018645	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr2	220264543	rs58721028	C	CAT	5521.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr2	220283259	rs1318299	A	G	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	220283277	rs2017800	T	C	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr2	220283826	rs907677	T	G	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr2	220284779	rs12991025	C	T	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.530;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:43,40:0.48:83
chr2	220285309	rs1058261	C	T	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:144,155:0.52:299
chr2	220285666	rs12920	G	C	3893.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:187,188:0.50:375
chr2	220286142	rs1058284	G	A	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:115,112:0.49:227
chr2	220290333	rs56346747	A	G	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:104,68:0.40:172
chr2	220306413	rs4674398	G	T	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	220308581	rs10932805	A	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr2	220315970	rs10932806	G	A	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	220316579	rs4674399	C	T	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	220330646	rs1976618	C	T	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:7,96:0.93:103
chr2	220330661	rs1976617	A	G	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:7,121:0.95:128
chr2	220330724	rs1567488	C	T	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:8,241:0.97:249
chr2	220330804	rs1567487	T	C	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	220333950	rs10167209	T	C	8569.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr2	220336517	rs73991563	C	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr2	220337196	rs1039897	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	220341935	rs201853159	A	AG	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=8.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.47;ReadPosRankSum=1.029;SOR=1.843;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	220341937	.	G	GGCGGGGCCTGGTACAGCGGC	1652	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=1652;QD=839.5;SC=AGGAGATGAGGCCCTGGCCCC;SbPval=0.19;Source=Platypus;TC=7;TCF=4;TCR=3;TR=2;WE=220341946;WS=220341927;set=Platypus	GT:AD:AF:DP	0/1:5,2:0.29:7
chr2	220341938	.	C	T	133	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=133;QD=83.8856062736;SC=GGAGATGAGGCCCTGGCCCCA;SbPval=0.06;Source=Platypus;TC=13;TCF=10;TCR=3;TR=2;WE=220341946;WS=220341927;set=Platypus	GT:AD:AF:DP	0/1:11,2:0.15:13
chr2	220341938	.	C	CGGGGCCTGGTACAGCGGCT	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=49.53;ReadPosRankSum=0.497;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	220346596	rs3731906	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr2	220348751	rs10755037	C	T	5865.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:362,292:0.45:654
chr2	220353013	rs875098	G	A	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:154,157:0.50:311
chr2	220353104	rs875097	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:76,70:0.48:146
chr2	220353440	rs62191888	G	T	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:65,66:0.50:131
chr2	220354108	rs55760516	A	G	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:205,198:0.49:403
chr2	220354365	rs56132883	C	T	7821.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:427,387:0.48:814
chr2	220354757	rs6742231	G	C	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr2	220355529	rs12464085	A	G	5177.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:217,257:0.54:474
chr2	220356449	rs6747041	G	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,56:0.52:108
chr2	220356520	rs12473286	G	T	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:162,135:0.45:297
chr2	220356806	rs907146	C	T	9669.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr2	220357594	rs1078212	C	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr2	220358198	rs1050816	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr2	220361265	rs2385541	A	G	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	220361486	rs2010592	G	A	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr2	220361520	rs16859986	C	G	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:53,56:0.51:109
chr2	220362283	rs2010528	C	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr2	220362557	rs12474050	C	T	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:94,101:0.52:195
chr2	220362899	rs2029251	C	G	9505.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr2	220366953	rs2385539	G	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr2	220371181	rs10932808	T	A	4067.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr2	220379560	rs3731909	C	G	5538.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:298,283:0.49:581
chr2	220380125	rs1872858	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	220397811	rs6731344	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	220397825	rs6716083	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr2	220401751	rs2385538	G	A	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:95,84:0.47:179
chr2	220402624	rs11689270	G	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	220402671	rs11689281	G	T	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.538;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-0.116;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:59,41:0.41:100
chr2	220402680	rs11695248	T	C	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=-0.727;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:69,49:0.42:118
chr2	220404381	rs1976616	A	G	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	220404648	rs1043833	C	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:101,62:0.38:163
chr2	220404726	rs1043832	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr2	220405230	rs6436154	G	A	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:116,109:0.48:225
chr2	220405321	rs6436155	T	C	6302.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	220406239	rs13004994	T	G	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=1.168;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:30,35:0.54:65
chr2	220406722	rs3731912	T	C	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:155,122:0.44:277
chr2	220406944	rs7581251	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.66;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr2	220409701	rs10932811	C	T	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:52,64:0.55:116
chr2	220412256	rs8179770	T	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr2	220413661	rs12996466	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	220414016	rs6436156	C	T	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.25;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	220414016	.	CCCT	TCCC,TCCT	577	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=21,43;NR=32,58;PP=577,507;QD=11.8956202804;SC=GGCCACCAGACCCTGCTTATC;SbPval=0.68;Source=Platypus;TC=104;TCF=45;TCR=59;TR=53,101;WE=220414027;WS=220414005;set=Platypus	GT:AF:DP	0/1:0.51:104
chr2	220414019	rs13023533	T	C	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.132;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:45,64:0.59:109
chr2	220415595	rs146790993	GGA	G	2243.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:75,64:0.46:139
chr2	220415646	rs1043582	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr2	220415717	rs3731918	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr2	220415752	rs6745782	C	T	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	220416164	rs6761575	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	220416570	rs4672931	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	220416591	rs4672932	C	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr2	220416803	rs4672933	A	T	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr2	220416942	rs34490902	G	C	1711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.209;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.222;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:92,90:0.49:182
chr2	220416967	rs4672934	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:52,70:0.57:122
chr2	220417228	rs60549465	G	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr2	220417266	rs59332477	C	T	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:102,87:0.46:189
chr2	220419236	rs10932813	T	C	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	220419339	rs10932814	T	C	6078.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr2	220420785	rs3087971	G	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr2	220420956	rs10932816	A	G	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	220421417	rs1983210	C	G	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:127,132:0.51:259
chr2	220421479	rs13010015	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:79,53:0.40:132
chr2	220422400	rs2278200	C	G	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr2	220422774	rs2278201	A	G	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:150,105:0.41:255
chr2	220427347	rs10804275	G	T	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:140,120:0.46:260
chr2	220427395	rs3183099	G	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr2	220427428	rs55904205	GA	G	1548.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:53,49:0.48:102
chr2	220427996	rs11904583	T	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,64:0.98:65
chr2	220428381	rs2303543	A	T	9578.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr2	220430203	rs1039898	C	T	11824.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr2	220431458	rs62191614	A	C	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr2	220431631	rs1043537	G	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,79:0.53:148
chr2	220431919	rs4674412	A	G	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr2	220432014	rs61732787	G	A	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:49,79:0.62:128
chr2	220432709	rs2292360	A	T	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:303,184:0.38:487
chr2	220433113	rs12623922	T	C	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	220435034	rs10180675	A	G	18703.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr2	220435375	rs1061399	G	A	2805.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chr2	220435996	.	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=27.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-0.086;SOR=3.895;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr2	220436005	.	T	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=29.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.522;SOR=2.508;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr2	220439330	rs116399602	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr2	220462640	rs681747	G	T	6683.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	220466199	rs620698	G	T	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr2	220466344	rs11405075	G	GT,GTT	863.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.420;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-0.394;SOR=0.768;set=HC	GT:AD:AF:DP	1/2:9,31,20:0.52,0.33:60
chr2	220470710	rs149218768	G	A	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:109,102:0.48:211
chr2	220471116	rs633200	C	G	8737.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr2	220476443	rs627530	C	T	10228.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr2	220476645	rs581547	T	C	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	220477976	.	A	AGGGGGGAGATGGGGTGAGTT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=-0.000;DP=65;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.30;ReadPosRankSum=1.559;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr2	220478010	.	G	GT	96	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=4;HapScore=2;MGOF=17;MMLQ=26;MQ=54.97;NF=0;NR=2;PP=96;QD=60.5;SC=GGGAGATGGGGGAGTGAGGGG;SbPval=1.0;Source=Platypus;TC=12;TCF=1;TCR=11;TR=2;WE=220478018;WS=220478000;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr2	220479055	rs2305052	C	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr2	220479312	rs624773	T	C	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr2	220480639	rs640807	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	220480693	rs665845	G	C	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	220494118	rs597306	A	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:4,73:0.95:77
chr2	220495167	rs612078	A	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	220500321	rs2305055	C	G	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:60,45:0.43:105
chr2	220500423	rs589767	A	G	8539.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr2	220500426	rs639214	A	G	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	220502137	rs621515	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr2	220502367	rs635311	A	C	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:194,172:0.47:366
chr2	220505265	rs684428	T	C	4762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.521;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:274,240:0.47:514
chr2	220505421	rs72961491	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr2	220506522	rs2305054	G	A	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:63,56:0.47:119
chr2	220771223	rs4674470	C	T	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	220771290	rs4674471	G	A	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	220771310	rs4674472	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr2	220771378	rs4674473	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	222290902	rs2303901	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	222301357	rs3213844	T	C	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr2	222301713	rs2303900	C	T	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	222301912	rs2303897	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	222307534	rs2288628	G	T	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	222307778	rs67269206	CAAGATGA	C	754.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	222320427	rs2288627	G	A	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	222321225	rs6718949	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	222367238	rs56263717	C	T	1873.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:119,96:0.45:215
chr2	222431521	rs35574019	G	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.483;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	222435035	rs200647532	TCC	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	222435048	rs2710504	A	G	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	222437136	rs11381414	A	AG	110	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	223065870	rs3731858	C	G	2843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=1.639;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:150,154:0.51:304
chr2	223066017	rs199895781	A	AC	1093.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;MQ=60.26;set=Intersection	GT:AD:AF:DP	0/1:60,53:0.47:113
chr2	223158385	rs28945096	A	G	2050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-1.773;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:94,104:0.53:198
chr2	223160493	rs45441600	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr2	223161889	rs12623857	A	G	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	223162024	rs6754024	T	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	223163232	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-1.400;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr2	223289263	.	CCAGCGGAGGGCACCGGCCCGGCGTGG	C	436.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	223423362	rs4674664	A	G	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr2	223436428	rs3211018	T	C	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	223436607	rs7185	C	T	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	223489249	rs3214770	GT	G	1060.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	223489293	rs2290031	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	223493435	rs2019357	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	223520905	rs2166652	G	C	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	223520978	rs2044537	A	G	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	223559089	rs1868024	T	C	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr2	223780921	rs12623448	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr2	223781017	rs60362808	AT	A	264.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr2	223781018	rs35780866	T	A	191.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.331;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	223783841	rs13000358	G	A	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:91,89:0.49:180
chr2	223785504	rs6739824	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	223785740	rs6756323	A	G	3052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.394;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:166,160:0.49:326
chr2	223785846	rs6728234	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	223787559	rs11891410	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	223787691	rs10932978	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	223793471	rs1550419	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	223793480	rs1550420	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	223798173	rs34942789	T	TC	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	223799207	rs935030	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	223806189	rs35090606	C	CT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.223;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr2	223806194	rs1550426	C	T	1424.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.13;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	223917629	rs3795886	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	223917812	rs10201907	T	C	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr2	223917983	rs12621643	T	G	7924.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr2	223918080	rs10189762	C	G	7593.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr2	224629876	rs10644138	C	CCATCAT	3883.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	224702305	rs3738961	G	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr2	224743373	rs571111	C	T	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:83,134:0.62:217
chr2	224743591	rs602675	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr2	224743652	rs547234	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr2	224744701	rs516849	A	G	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	224749576	.	C	CTTCT	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.161;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr2	224758906	rs625150	C	T	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:95,83:0.47:178
chr2	224760494	rs597349	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	224763618	.	C	G	663.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr2	224763816	rs530065	C	T	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr2	224765894	rs604990	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr2	224777094	rs541712	T	C	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:62,58:0.48:120
chr2	224777105	rs113054269	G	GTGAT	1663.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr2	225376032	rs6743816	G	C	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr2	225378382	rs3830376	ATAAT	A	172.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr2	225635177	rs141390627	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	225664782	rs77823647	TAAA	T	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	225665074	rs1560859	G	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	225668717	rs141021252	ATG	A,ATGTG	1109.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.817;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.61;ReadPosRankSum=0.376;SOR=0.267;set=HC	GT:AD:AF:DP	1/2:7,31,25:0.49,0.40:63
chr2	225670901	rs4674941	G	C	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:61,44:0.42:105
chr2	225672460	rs12328236	G	A	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:102,86:0.46:188
chr2	225684166	rs7572725	A	G	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:140,102:0.42:242
chr2	225688041	rs13405571	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr2	225688100	rs13431331	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr2	225695334	rs66902027	TG	T	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr2	225699079	rs10177782	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr2	225702565	rs6724332	G	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:119,75:0.39:194
chr2	225709636	rs11682884	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr2	225709926	rs7577271	A	G	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:106,86:0.45:192
chr2	225719571	rs72305904	GCCAACCAA	G	4972.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	225719781	rs145044043	G	GACAC,GACACACAC	2193.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.082;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.000;QD=42.19;ReadPosRankSum=-0.756;SOR=0.756;set=HC	GT:AD:AF:DP	1/2:4,34,14:0.65,0.27:52
chr2	225727431	rs7589474	T	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:99,100:0.50:199
chr2	225729253	rs374016991	A	G	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.693;QD=10.49;ReadPosRankSum=-0.196;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:91,97:0.52:188
chr2	225739574	rs10181328	C	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	225740593	rs11891443	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr2	225750348	rs11337772	TA	T	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr2	225750753	rs10197805	T	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	225750861	rs2304336	C	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	225751103	rs2304335	C	T	736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.996;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=0.293;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:33,37:0.53:70
chr2	225751256	rs71734299	TA	T	335.82	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr2	225751293	rs2304334	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	225781669	rs12987341	GT	AC	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	225796112	rs17271574	G	A	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	225796458	rs35061287	ATC	A	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	225811581	rs13021295	T	A	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr2	225811592	rs78257220	T	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr2	225848579	rs375205	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr2	225875158	rs590233	A	C	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr2	225907150	rs397052	C	T	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.629;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=0.197;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:66,50:0.43:116
chr2	226273490	rs2048935	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	226273689	rs2048936	T	C	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr2	226273692	.	T	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.856;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:196,31:0.14:227
chr2	226447735	rs3828256	C	T	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:119,90:0.43:209
chr2	226447844	rs6436570	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	226491770	rs3748993	A	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr2	226516346	rs11884382	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr2	227773466	rs3820928	T	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr2	227853157	rs112368937	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr2	227892498	rs7580776	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	227914975	rs2251223	T	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr2	227922104	rs7567789	T	C	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-2.490;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr2	227922109	rs7567796	T	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr2	227922454	rs2141829	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr2	227925097	rs6436650	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	227927189	rs35717623	GT	G	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=0.980;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,28:0.45:62
chr2	227966148	rs16823202	C	T	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.751;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	227966298	rs59443812	T	TA	2198.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=4.350;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.500;QD=15.93;ReadPosRankSum=0.584;SOR=0.278;set=HC	GT:AD:AF:DP	1/1:17,121:0.88:138
chr2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	3832.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr2	227967830	rs10707643	GA	G	635.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:4,37:0.90:41
chr2	227968553	rs7602059	A	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	227973095	rs7600536	A	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	227973410	rs55741079	C	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr2	227973623	rs12475686	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr2	227974113	rs6436654	A	G	8334.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr2	227974191	rs6436655	A	G	3903.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr2	228102723	rs13424243	G	C	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr2	228104760	rs7579991	C	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr2	228109626	rs113428834	T	TG	1118.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.000;QD=18.04;ReadPosRankSum=-0.952;SOR=0.388;set=HC	GT:AD:AF:DP	1/1:3,59:0.95:62
chr2	228109784	rs6750210	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr2	228111435	rs10178458	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	228111600	rs10168566	G	T	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	228111604	rs10168567	G	T	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	228111651	rs10192026	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	228112186	rs4321358	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr2	228113175	rs6436669	A	G	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	228118403	rs12621551	T	G	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr2	228121101	rs55703767	G	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr2	228128540	rs10205042	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:48,61:0.56:109
chr2	228131912	rs10933174	C	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr2	228135631	rs28381984	C	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr2	228142038	rs59353048	GAA	G	740.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=6.952;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=0.712;QD=23.15;ReadPosRankSum=-0.266;SOR=2.114;set=HC	GT:AD:AF:DP	1/1:3,29:0.91:32
chr2	228144706	rs6729152	G	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	228145543	rs6436671	C	T	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	228146991	rs111486503	AATATAT	AAT,A	1065.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	1/1:1.00:27
chr2	228149107	rs6436672	A	G	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	228154095	rs7593281	C	T	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	228158418	rs7569636	T	C	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	228158648	rs7608999	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	228159063	rs6436675	T	C	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	228159660	rs35803812	GT	G	728.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.457;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.039;QD=11.56;ReadPosRankSum=-0.022;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:9,54:0.86:63
chr2	228175629	rs183218622	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.275;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:25,19:0.43:44
chr2	228194570	rs6706656	G	A	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr2	228194639	rs11384091	T	TA	228.52	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,14:0.88:16
chr2	228197368	rs4500938	A	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr2	228204929	rs4420693	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr2	228204982	rs4442987	C	T	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	228207625	rs6738078	G	A	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr2	228220528	rs12478005	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	228356364	rs11289047	GT	G	278.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=-0.612;SOR=0.491;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr2	228373404	rs11464376	A	AT	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-1.817;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr2	228399480	rs7588620	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	228416498	rs7598597	C	T	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	228416712	rs13426457	A	G	13655.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr2	228476253	rs2138402	C	G	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	228477814	rs7586824	G	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr2	228560800	rs11334205	GA	G	4701.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:1,208:1.00:209
chr2	228567111	rs71039629	AT	A	362.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.864;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.487;QD=12.95;ReadPosRankSum=-0.900;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr2	228680153	rs11422779	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.000;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr2	228736308	rs56258223	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr2	228736313	rs12478068	G	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,48:0.51:95
chr2	228736341	rs56333712	C	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,66:0.46:142
chr2	228736527	rs12470042	A	G	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr2	228736608	rs10933219	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr2	228740927	rs4972994	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	228741250	rs7571353	T	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr2	228750239	rs4973445	G	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:49,39:0.44:88
chr2	228758437	rs141778037	T	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,55:0.52:105
chr2	228758456	rs35758334	C	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr2	228758554	rs1715828	A	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:99,64:0.39:163
chr2	228767618	rs2949014	T	C	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	228767631	rs2946931	G	T	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr2	228776996	rs3748862	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:42,34:0.45:76
chr2	228846564	rs61755300	C	G	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr2	228855958	rs16824284	T	C	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:148,118:0.44:266
chr2	228882970	rs3828161	T	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:65,50:0.43:115
chr2	228883721	rs3811514	T	C	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,84:0.53:160
chr2	228973383	rs67714256	A	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	228973660	rs7561798	A	G	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	228973723	rs11374866	C	CT	355.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.586;QD=10.78;ReadPosRankSum=1.456;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr2	228992763	rs6719186	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	228992850	rs6734166	T	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	228996637	rs4479423	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr2	228996650	rs4353646	A	G	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	228996672	rs4585022	G	A	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr2	229035357	rs4630759	T	A	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	229035442	rs4334483	A	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	230092889	rs1419944	C	T	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr2	230092950	rs1419945	C	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	230096587	rs1226982	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	230135527	rs1227013	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	230135711	rs67686611	G	GC	2895.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr2	230223451	rs57056068	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr2	230231889	rs2302769	A	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr2	230282624	rs6760224	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	230312261	rs10490182	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr2	230341979	rs146727100	AC	A	994.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:88,68:0.44:156
chr2	230411630	.	T	C	1706.77	.	AC=1;AF=0.500;AN=2;DP=194;set=Intersection	GT:AD:AF:DP	0/1:103,89:0.46:192
chr2	230453149	rs139114799	C	T	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=2.515;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:36,26:0.42:62
chr2	230453214	rs11458391	G	GA	693.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.090;MLEAC=2;MLEAF=1.000;MQ=60.19;MQRankSum=0.483;QD=15.42;ReadPosRankSum=-0.055;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:6,39:0.87:45
chr2	230655733	rs722268	C	T	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	230666898	rs10432554	A	G	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	230668968	rs4972915	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr2	230695958	rs76532016	T	C	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=0.444;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr2	230705516	rs11373804	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.285;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr2	230744570	rs479492	C	T	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	230875311	rs11675143	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr2	230914766	rs6748654	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	230923648	rs9750739	C	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	231037833	rs10498244	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	231042276	rs1135791	A	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:190,186:0.49:376
chr2	231050715	rs3948464	A	G	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:151,135:0.47:286
chr2	231072569	rs41309106	T	C	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr2	231072709	rs1365776	C	T	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.694;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:80,81:0.50:161
chr2	231076032	.	G	T	39	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=3;HapScore=2;MGOF=6;MMLQ=28;MQ=60.0;NF=4;NR=0;PP=39;QD=18.4428031368;SC=TCTCCTGCCTGTTCAAGCTCC;SbPval=1.0;Source=Platypus;TC=9;TCF=8;TCR=1;TR=4;WE=231076040;WS=231076028;set=Platypus	GT:AD:AF:DP	0/1:5,4:0.44:9
chr2	231077725	rs1129411	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr2	231077868	rs7601176	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	231081405	rs7580912	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	231103185	rs2278197	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr2	231106244	rs2288328	G	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr2	231118186	rs3769840	G	A	1510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.272;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=1.826;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:81,77:0.49:158
chr2	231149108	rs4972946	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	231155413	rs3820976	T	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:119,101:0.46:220
chr2	231157271	rs7602027	T	C	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,48:0.62:78
chr2	231175549	rs200258126	T	C	92.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.84;MQRankSum=-0.210;QD=15.48;ReadPosRankSum=-0.431;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	231175763	rs78116662	G	A	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:49,52:0.51:101
chr2	231177200	rs3086614	CTT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.208;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr2	231253434	rs7586155	T	G	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=2.160;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr2	231256755	rs10184953	C	T	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:104,88:0.46:192
chr2	231258150	rs7590429	C	T	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=3.339;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:35,44:0.56:79
chr2	231282534	rs35969967	C	CT	41.74	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr2	231327291	rs1649863	A	G	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,71:0.49:145
chr2	231327430	rs17333468	G	A	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr2	231328696	rs2306274	C	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr2	231328720	rs2306275	C	T	1813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.09;ReadPosRankSum=-0.484;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:47,48:0.51:95
chr2	231328728	rs2306276	C	T	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.19;ReadPosRankSum=-1.128;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr2	231330826	rs113262860	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=10.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.62;ReadPosRankSum=-2.362;SOR=2.526;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	231330899	.	C	CAAAAA	288.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.27;ReadPosRankSum=1.426;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr2	231331694	rs1678159	A	G	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.14;ReadPosRankSum=0.640;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr2	231331701	rs3214547	A	AG	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.36;ReadPosRankSum=0.051;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr2	231331706	rs2303609	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.81;ReadPosRankSum=0.047;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr2	231331799	rs1649869	T	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.645;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:51,43:0.46:94
chr2	231331896	rs1050224	G	A	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:87,94:0.52:181
chr2	231333763	rs12724	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	231333834	rs1649873	G	A	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-0.317;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr2	231333852	rs1649874	A	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	231333890	rs1649875	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr2	231334010	rs1649877	CA	TG	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=-2.303;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:33,29:0.47:62
chr2	231334216	rs1051579	T	C	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-0.437;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr2	231334299	rs1051580	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr2	231334421	rs1051581	A	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr2	231334504	rs139756804	AAAAG	A	414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.648;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.600;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:32,29:0.48:61
chr2	231334679	rs1678162	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr2	231337960	rs1615190	C	T	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr2	231338211	rs1678169	T	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr2	231359098	rs836230	T	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr2	231405572	rs4973329	T	G	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,40:0.51:78
chr2	231406194	rs866270	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	231406680	rs836237	T	C	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=1.205;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:87,88:0.50:175
chr2	231407519	rs6717269	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr2	231683487	rs16836174	CTT	C	724.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr2	231738168	rs2289235	G	A	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	231738263	rs2289234	C	T	7939.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr2	231738269	rs2289233	G	A	7663.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr2	231738318	rs3816150	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr2	231740276	rs2289231	A	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	231742864	rs62195287	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr2	231774844	rs2396777	G	A	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:114,104:0.48:218
chr2	231775094	rs3749073	C	A	1421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.06;ReadPosRankSum=0.676;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:86,71:0.45:157
chr2	231775297	rs1992186	T	G	2207.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:108,103:0.49:211
chr2	231860838	rs2271369	C	T	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.333;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=1.369;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr2	231860848	rs6722863	A	G	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.63;SOR=5.186;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	231864529	rs6436986	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:87,61:0.41:148
chr2	231864600	rs7573039	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:56,51:0.48:107
chr2	231864646	rs11684067	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr2	231865018	rs13406394	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr2	231865047	rs3817173	T	C	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr2	231865090	rs2271376	T	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr2	231865144	rs12105962	G	C	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:118,88:0.43:206
chr2	231865269	rs2271375	G	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr2	231867220	rs10933364	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	231902316	rs186173488	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=0.040;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr2	231902471	.	C	G	23	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=0.9998;HP=2;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=2;NR=2;PP=23;QD=14.4428031368;SC=CCAGGCGCGGCCAAGCCGGGC;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=231902479;WS=231902461;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	231921586	rs12469096	G	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr2	231934959	rs41311315	A	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr2	231944373	rs2303353	A	T	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr2	231949946	rs2303357	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr2	232025952	rs35533383	T	TA	111.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	232029738	.	TTATATATATTTATATATATATATATATATATATATATATATATATATATATATA	T	728.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	232030510	rs2303351	C	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr2	232030555	rs2303350	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr2	232030861	rs2303349	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr2	232035429	rs6749	G	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr2	232072796	rs112353881	ATTTG	A	169.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr2	232072912	rs11558174	T	C	1403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=-0.629;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:81,72:0.47:153
chr2	232073106	rs12465438	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,23:0.49:47
chr2	232079409	rs79587894	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr2	232087474	rs1626450	AT	GA	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.19;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	232225535	rs35889244	C	CG	9749.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr2	232260537	rs4972989	T	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	232263127	rs2290130	G	A	4520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.330;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:213,228:0.52:441
chr2	232317402	rs11295750	CA	C	3256.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:126,111:0.47:237
chr2	232320856	rs150234462	G	GA	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr2	232321956	rs7598759	C	T	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:69,80:0.54:149
chr2	232322829	rs6712148	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	232325692	rs12996154	A	C	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr2	232326417	rs1131171	C	T	1258.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:78,57:0.42:135
chr2	232326801	rs2595514	A	T	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:171,175:0.51:346
chr2	232378231	rs6750795	T	C	6048.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr2	232389744	rs3752762	A	G	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:85,62:0.42:147
chr2	232390151	rs3752763	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr2	232457880	rs74460533	T	C	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:153,162:0.51:315
chr2	232458443	rs10933378	T	C	9649.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:2,354:0.99:356
chr2	232573469	rs181168299	T	C	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:113,94:0.45:207
chr2	232673378	rs60365791	A	AT	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=2.260;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr2	232790053	rs5268	C	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr2	232888856	rs896990	T	G	72.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	232952143	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.301;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr2	233028070	rs3116181	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	233243660	rs2014448	T	C	8092.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr2	233243981	rs13026692	A	T	8138.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr2	233244586	rs2853374	C	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	233244861	rs2853375	G	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.779;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-12.776;QD=1.66;ReadPosRankSum=-5.396;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:138,28:0.17:166
chr2	233245090	rs2260307	A	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr2	233245141	rs2260309	T	C	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr2	233271697	rs3830644	T	TAC	2052.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:170,114:0.40:284
chr2	233273011	rs75920311	C	G	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.759;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=6.795;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-11.513;QD=8.33;ReadPosRankSum=-2.728;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:161,54:0.25:215
chr2	233273018	rs75080031	G	A	1850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.118;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=3.414;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-10.610;QD=8.15;ReadPosRankSum=-2.971;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:165,62:0.27:227
chr2	233273244	rs17416141	C	A	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:172,100:0.37:272
chr2	233273504	rs183793479	T	G	205.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.31;MQRankSum=-1.593;QD=22.87;ReadPosRankSum=-0.765;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr2	233274145	rs2090543	G	C	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr2	233274476	rs114768772	G	C	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.731;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=53.99;MQRankSum=-6.664;QD=2.41;ReadPosRankSum=-0.938;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:80,20:0.20:100
chr2	233274509	rs1048995	C	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr2	233310297	rs796887	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.81;QD=26.28;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	233310369	rs790045	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=25.77;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	233310423	rs814220	C	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.72;QD=24.33;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	233310491	rs809327	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.84;QD=25.47;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	233320885	rs3762519	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr2	233321641	rs61732032	C	T	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:117,137:0.54:254
chr2	233321836	rs2272422	G	A	2823.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:105,131:0.56:236
chr2	233322424	rs2246004	T	C	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:96,83:0.46:179
chr2	233322958	rs41265121	T	C	2827.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:113,140:0.55:253
chr2	233323177	rs2003780	T	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr2	233323205	rs2741269	C	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr2	233344991	rs2741279	T	G	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr2	233345249	rs1190432	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=0.152;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr2	233345861	rs61731716	G	A	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:152,125:0.45:277
chr2	233346662	rs909432	A	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	233348647	rs2241755	G	A	6761.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr2	233349588	rs1529874	G	A	11072.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr2	233350548	rs113660447	G	A	2437.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	233385202	rs2741294	C	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	233385396	rs1550094	G	A	2236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-1.765;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:76,109:0.59:185
chr2	233386229	rs2853444	T	C	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:102,95:0.48:197
chr2	233386328	rs2741295	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr2	233386583	rs2853445	T	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:116,78:0.40:194
chr2	233387635	rs733603	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr2	233388813	rs2741299	T	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr2	233389918	rs2853447	A	G	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.01;ReadPosRankSum=0.520;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:84,92:0.52:176
chr2	233390937	rs2245601	A	G	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:53,58:0.52:111
chr2	233392020	.	AAG	A	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.108;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr2	233407120	rs2853462	C	T	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:109,127:0.54:236
chr2	233408220	rs10714586	AG	A	6220.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr2	233408239	rs2573206	C	G	2441.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:131,114:0.47:245
chr2	233409013	rs2250451	G	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr2	233415978	rs11899983	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:112,90:0.45:202
chr2	233416068	rs12617942	C	T	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:88,76:0.46:164
chr2	233421284	rs3830645	CT	C	1485.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:92,70:0.43:162
chr2	233428927	rs1656397	G	C	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr2	233429144	rs111584120	GTATTTTATTT	G	1360.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr2	233429185	rs1656396	G	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr2	233429196	rs1729255	C	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr2	233438786	rs2293338	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr2	233470843	rs7571133	G	A	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.260;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:84,94:0.53:178
chr2	233498506	rs112941683	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr2	233536926	rs11684420	T	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=1.293;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr2	233537125	rs11550699	A	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,53:0.45:119
chr2	233599904	rs11555646	A	C	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr2	233633460	rs1801251	G	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	233641083	rs737027	G	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	233677041	.	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.826;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr2	233712223	.	T	C	1009.77	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr2	233723182	rs1284	G	A	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=-1.787;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr2	233744130	.	GC	G	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.911;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr2	233749914	rs80050391	G	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr2	233757697	rs895432	A	G	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr2	233759650	rs75269119	T	A	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:142,139:0.49:281
chr2	233785015	rs778354	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr2	233834975	rs4973588	A	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr2	233835088	rs78336991	T	C	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:72,125:0.63:197
chr2	233835150	rs75687703	A	C	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:43,81:0.65:124
chr2	233839710	rs75758173	A	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	233880271	rs60652209	A	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chr2	233880508	rs62193981	A	G	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:83,67:0.45:150
chr2	233899377	rs2233394	C	T	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:151,89:0.37:240
chr2	233925166	rs1141328	G	A	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:46,44:0.49:90
chr2	233925406	rs34218488	T	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:55,60:0.52:115
chr2	233925491	rs4246649	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr2	233986988	rs188105466	C	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr2	233997595	.	AT	A	237.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=4.260;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.861;QD=6.79;ReadPosRankSum=-0.239;SOR=2.613;set=HC	GT:AD:AF:DP	0/1:9,26:0.74:35
chr2	233998646	rs6738961	C	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	234054515	rs147786898	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.768;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=-0.608;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr2	234054873	rs1135173	G	A	5105.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:277,251:0.48:528
chr2	234054989	rs36180605	T	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:151,117:0.44:268
chr2	234055004	rs36189208	T	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:120,98:0.45:218
chr2	234066969	rs36127492	C	G	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-0.993;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:56,59:0.51:115
chr2	234067089	rs36165346	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr2	234070171	rs28605534	G	C	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr2	234070190	rs28609111	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr2	234070233	rs28576692	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr2	234072626	rs141642539	T	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	234079551	.	CAA	C	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=-1.166;SOR=1.400;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	234091158	rs4571051	T	C	6044.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	234093035	rs6740918	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:97,85:0.47:182
chr2	234103862	rs138305144	G	GA	700.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	234103863	rs62192895	C	G	709.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr2	234107070	rs7569827	G	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr2	234112649	rs7609436	T	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	234113057	rs7346	G	A	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:152,156:0.51:308
chr2	234113301	rs9247	C	T	2822.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:170,143:0.46:313
chr2	234113421	rs70958391	C	CGTATGTGT	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.50;ReadPosRankSum=-0.278;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr2	234160345	rs2289477	T	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	234160669	rs10199278	C	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	234171812	rs13011156	A	G	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:145,130:0.47:275
chr2	234173503	rs12994997	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	234178624	rs35705047	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.171;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr2	234181593	rs2289475	G	C	5465.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr2	234182240	rs2289472	C	T	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	234183368	rs2241880	A	G	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr2	234183468	rs2241879	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	234184417	rs3792109	G	A	7291.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,274:0.99:276
chr2	234197717	rs4663136	C	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	234227523	rs2304777	A	G	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	234227693	rs2304776	C	T	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr2	234235749	rs2304774	G	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr2	234238254	rs745498	T	G	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr2	234247627	rs2241874	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	234255145	rs35371121	A	C	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr2	234255547	rs1046974	G	A	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr2	234294561	rs3075537	T	TTC	4720.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:146,124:0.46:270
chr2	234294791	rs838716	G	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.390;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-1.239;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	234368715	.	TA	T	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.197;QD=3.82;ReadPosRankSum=-0.782;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:25,21:0.46:46
chr2	234375944	rs2305540	C	T	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	234438246	rs56828432	C	CT	3042.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	234438354	rs12692193	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	234442437	rs11332355	CA	C	411.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr2	234449316	rs2167884	G	A	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr2	234449462	rs1545525	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	234450822	rs1901812	T	C	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	234457900	rs3965793	T	A	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr2	234469664	rs6753062	T	C	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr2	234526223	rs11415286	A	AT	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.048;QD=6.71;ReadPosRankSum=-0.205;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr2	234526871	rs1042597	C	G	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:135,109:0.45:244
chr2	234545039	rs149250772	A	AT	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.41;MQRankSum=-2.136;QD=11.88;ReadPosRankSum=0.176;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr2	234580453	rs3832043	AT	A	519.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr2	234590970	rs17868323	T	G	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.552;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.899;QD=19.29;ReadPosRankSum=-0.593;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr2	234590974	rs17863778	CG	AA	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.301;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-0.927;QD=20.38;ReadPosRankSum=-0.217;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:26,28:0.52:54
chr2	234598991	rs7563561	T	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr2	234599089	rs7608175	C	G	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:203,188:0.48:391
chr2	234599296	rs45615240	T	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr2	234601669	rs6759892	T	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr2	234601965	rs1105880	A	G	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-1.828;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:66,69:0.51:135
chr2	234602202	rs1105879	A	C	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:118,103:0.47:221
chr2	234602277	rs17863783	G	T	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:164,106:0.39:270
chr2	234627937	rs2011404	T	C	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr2	234688036	rs6431631	C	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr2	234702212	rs6738710	G	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr2	234702459	rs1500481	T	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr2	234702905	rs10169532	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	234703136	rs6431634	T	C	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr2	234704150	rs2885297	T	C	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr2	234704318	rs2361503	A	G	23705.77	.	AC=2;AF=1.00;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	1/1:0,886:1.00:886
chr2	234704495	rs11563248	T	G	6868.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr2	234704690	rs759173	T	C	6633.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr2	234704746	rs759172	G	C	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr2	234707341	rs1500479	T	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr2	234708428	rs13013882	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	234708570	rs11563069	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr2	234708629	rs13018934	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr2	234708720	rs2041652	T	G	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	234708824	rs55686299	T	G	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	234709000	rs11563245	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	234710831	rs10929306	G	C	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	234711008	rs741158	G	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	234712652	rs11562982	C	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	234713571	rs11563242	C	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	234713706	rs4430949	T	C	3434.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr2	234713812	rs2041651	G	T	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr2	234716309	rs6716876	G	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr2	234716426	rs11563241	G	A	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr2	234717669	rs10803663	A	G	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	234720734	rs988344	A	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	234725502	rs726016	T	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr2	234726616	rs6756004	A	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr2	234727250	rs719419	T	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr2	234727478	rs6759919	A	G	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr2	234727986	rs6754859	C	T	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:107,64:0.37:171
chr2	234728078	rs1500480	T	C	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr2	234730807	rs6734083	G	A	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:158,165:0.51:323
chr2	234732317	rs11676792	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr2	234737372	rs7564261	C	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr2	234738175	rs502059	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr2	234738472	rs582432	G	A	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr2	234740136	rs879665	G	A	3858.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:254,198:0.44:452
chr2	234740157	rs879664	G	A	4006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.79;ReadPosRankSum=-0.323;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:249,207:0.45:456
chr2	234740310	rs879666	C	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr2	234740758	rs213547	A	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr2	234740797	rs76276350	C	CAAAA	4440.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr2	234740798	rs3064782	T	A	4448.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr2	234740985	rs474242	G	A	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr2	234740985	.	GGC	AGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=4;HapScore=1;MGOF=25;MMLQ=27;MQ=60.0;NF=39;NR=44;PP=2947;QD=20;SC=AGTCCACCCCGGCACTCGGGG;SbPval=0.5;Source=Platypus;TC=85;TCF=39;TCR=46;TR=83;WE=234740995;WS=234740975;set=Platypus	GT:AD:AF:DP	1/1:2,83:0.98:85
chr2	234740987	rs658482	C	G	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr2	234741022	rs122856	T	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr2	234741028	rs5839496	A	AG	2981.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr2	234741443	rs213548	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr2	234749151	rs213555	C	T	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr2	234749783	rs17863822	C	G	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr2	234846198	rs1019103	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	234847478	rs17862925	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr2	234888643	rs6745987	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	234892127	rs4663995	T	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	234905078	rs11563208	C	T	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr2	234916771	.	AT	A	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.299;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr2	234916831	rs6734618	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr2	234923362	rs28948677	G	A	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	234967539	rs593668	T	A	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	235950187	rs1469375	T	C	14196.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr2	235951819	rs3795962	A	G	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:86,69:0.45:155
chr2	235961953	rs28403580	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:76,58:0.43:134
chr2	236403607	rs3738998	C	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr2	236433161	rs62191529	G	A	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:150,160:0.52:310
chr2	236433331	rs11689907	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:2,68:0.97:70
chr2	236433390	rs10207027	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr2	236578649	rs10201486	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr2	236683215	rs75558773	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	236716006	rs8178996	T	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:56,42:0.43:98
chr2	236761396	rs13006916	C	T	3748.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr2	236817336	rs57795387	CT	C	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:12,119:0.91:131
chr2	236923361	rs35361765	C	CT	1017.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr2	236957822	rs2034648	G	A	4380.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:205,215:0.51:420
chr2	237029104	rs2278884	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	237032607	rs11895915	T	G	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr2	237032703	rs8178994	T	C	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:148,127:0.46:275
chr2	237032837	rs11899677	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr2	237074635	rs114693893	G	A	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:142,153:0.52:295
chr2	237146643	rs72060634	TGTG	T	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	237149941	rs6756597	C	T	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	237150166	rs2015983	A	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	237489904	rs1045879	C	T	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:121,124:0.51:245
chr2	238166147	rs4377288	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr2	238243145	rs111578971	C	CTGT	531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.764;QD=26.59;ReadPosRankSum=0.869;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr2	238243292	rs1131296	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr2	238243464	rs2270669	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr2	238244781	rs11690358	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr2	238244863	rs35879189	TGCA	T	1698.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr2	238244923	rs11683438	C	T	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,58:0.51:113
chr2	238244963	rs6728818	A	G	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr2	238249108	rs61729844	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr2	238249630	rs4433949	C	T	2298.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:161,116:0.42:277
chr2	238249717	rs34558385	G	A	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:89,107:0.55:196
chr2	238258814	rs3790993	C	G	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:198,141:0.42:339
chr2	238259675	rs3790995	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr2	238261112	rs4663726	GC	AA	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr2	238266633	rs4663730	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	238267058	rs4663731	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:59,50:0.46:109
chr2	238271786	rs11287247	GC	G	465.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr2	238305211	rs1553032	C	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	238419543	rs71887544	CGT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=2.617;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:70,10:0.12:80
chr2	238457684	rs10173589	A	G	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr2	238461773	rs60687800	G	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=1.526;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:27,22:0.45:49
chr2	238461855	rs67525826	C	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr2	238462069	rs112744921	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.546;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr2	238462324	rs8260	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr2	238483164	rs6766	T	C	4036.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:212,205:0.49:417
chr2	238483283	rs147504247	GCCC	G	1625.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr2	238483475	rs2280288	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr2	238483654	rs72990107	G	A	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:93,119:0.56:212
chr2	238483671	rs59945834	G	A	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,110:0.55:199
chr2	238483729	rs2280289	A	G	2092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.318;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-2.926;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:78,100:0.56:178
chr2	238484222	rs10202062	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=0.101;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr2	238485251	rs72990117	G	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:53,99:0.65:152
chr2	238494742	rs3751112	A	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:91,108:0.54:199
chr2	238499863	rs146534321	A	AAATTCTTCAGGAGACTCT	563.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr2	238499866	rs114742872	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr2	238499997	rs6745883	TA	CG	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;JOINED;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr2	238500046	rs6742960	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr2	238500617	rs114637219	G	A	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	238500642	rs10084167	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr2	238503559	rs2325806	C	G	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.349;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:73,63:0.46:136
chr2	238536255	rs10170083	C	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr2	238536392	rs10184871	T	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr2	238688244	rs1151798	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr2	238894784	rs66771814	CT	C	384.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.471;QD=16.73;ReadPosRankSum=-0.823;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr2	238894953	rs12473327	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=1.315;QD=9.40;ReadPosRankSum=-1.448;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr2	238896494	rs59213280	C	CA	142.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr2	238903310	rs10203101	C	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr2	238912120	rs10929262	A	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:84,81:0.49:165
chr2	238939370	rs11679080	C	T	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-3.010;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:41,60:0.59:101
chr2	238969964	rs2250185	T	C	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.211;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:89,94:0.51:183
chr2	238972827	rs821480	T	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	238990388	rs3210400	G	A	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:138,134:0.49:272
chr2	238991733	rs2243417	C	A	2106.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:69,97:0.58:166
chr2	238991796	rs2278742	C	T	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:127,116:0.48:243
chr2	239002480	rs72316729	CTTG	C	2804.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr2	239007755	rs68159827	CATT	C	922.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr2	239007806	rs1054640	A	G	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,61:0.50:123
chr2	239007850	rs1054641	T	A	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.021;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:91,77:0.46:168
chr2	239007991	rs15787	T	A	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:28,33:0.54:61
chr2	239009336	rs61744770	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr2	239009384	rs62196013	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr2	239010455	rs5839683	GGAA	G	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr2	239010577	rs1562333	G	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:67,65:0.49:132
chr2	239010719	rs36066915	T	C	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=0.537;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:33,53:0.62:86
chr2	239016539	rs935415	C	G	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:242,184:0.43:426
chr2	239025523	rs11903074	T	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr2	239025630	rs11904159	T	C	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,118:0.53:222
chr2	239025645	rs11897736	C	T	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:87,105:0.55:192
chr2	239034043	rs10170048	A	C	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:151,128:0.46:279
chr2	239036270	rs13382446	C	T	5707.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:256,264:0.51:520
chr2	239036416	rs12692214	T	C	9161.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.32;SOR=1.282;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr2	239036416	.	TAGCCAGC	CAGCCAGA,CAGCCAGC	1882	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=33,102;NR=58,145;PP=1250,1882;QD=14.3238228007;SC=CCGGGGCCCCTAGCCAGCCTC;SbPval=0.75;Source=Platypus;TC=248;TCF=102;TCR=146;TR=91,247;WE=239036431;WS=239036406;set=Platypus	GT:AF:DP	0/1:0.37:248
chr2	239036423	rs62197371	C	A	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=4.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.546;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:154,101:0.40:255
chr2	239037273	rs72989009	C	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr2	239039637	rs4663845	T	C	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr2	239039841	rs10172220	A	G	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr2	239039896	rs10182906	G	C	10897.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr2	239040187	rs12692215	T	C	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr2	239050033	rs12692216	C	T	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr2	239051550	rs935411	T	C	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr2	239053436	rs12623661	G	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr2	239054504	rs11674140	G	T	6720.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr2	239054548	rs193061230	C	A	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-2.224;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:86,111:0.56:197
chr2	239059484	rs7605194	T	C	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr2	239070376	rs72989058	C	T	6379.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:267,303:0.53:570
chr2	239071244	rs35047785	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr2	239072506	rs117194634	G	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr2	239072806	rs111241405	G	T	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:58,80:0.58:138
chr2	239073046	rs6760421	C	T	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:149,150:0.50:299
chr2	239075812	rs3795905	C	T	1836.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:112,87:0.44:199
chr2	239075935	rs3820817	A	G	2455.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:114,114:0.50:228
chr2	239082166	rs3832064	G	GC	5152.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr2	239092474	rs2305173	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr2	239093788	rs6431588	T	C	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr2	239096955	rs72991006	C	G	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,68:0.50:136
chr2	239098594	rs34371548	T	C	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:101,119:0.54:220
chr2	239102856	rs3795903	A	G	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr2	239103574	rs35393292	G	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:93,74:0.44:167
chr2	239103603	rs7558210	C	G	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:81,70:0.46:151
chr2	239112344	rs113428548	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr2	239133980	rs7558525	C	T	2657.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:79,116:0.59:195
chr2	239134056	rs7572285	A	G	11593.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.46;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr2	239134056	.	AGCACCAG	GGCACCAG,GGCACCAT	2427	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=24;MQ=60.0;NF=163,86;NR=142,80;PP=1710,2427;QD=5.72056135261;SC=TACGTGCAAGAGCACCAGGGC;SbPval=0.56;Source=Platypus;TC=305;TCF=163;TCR=142;TR=305,166;WE=239134071;WS=239134046;set=Platypus	GT:AF:DP	0/1:1.00:305
chr2	239134063	rs7584376	G	T	3724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.863;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:155,176:0.53:331
chr2	239134138	rs7572392	A	C	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:121,132:0.52:253
chr2	239136143	rs3795902	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr2	239139883	rs13425452	G	C	2316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=0.587;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:106,110:0.51:216
chr2	239139920	rs11688755	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:66,65:0.50:131
chr2	239140403	rs35825433	T	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.330;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.151;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr2	239140426	.	A	AC	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=-0.501;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr2	239140434	rs111384196	C	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.525;QD=15.52;ReadPosRankSum=-2.467;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr2	239140728	rs11689033	A	G	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-1.720;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:79,75:0.49:154
chr2	239148970	rs56294817	C	A	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:82,94:0.53:176
chr2	239148996	rs140615710	CCCGT	C	6058.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr2	239155053	rs934945	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr2	239159178	rs3739062	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr2	239160419	rs77082809	C	A	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr2	239165633	rs2304671	C	T	2398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=0.842;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:128,123:0.49:251
chr2	239179914	rs2304676	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr2	239181904	rs2304674	A	G	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,50:0.52:97
chr2	239229372	rs13398676	C	A	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr2	239229580	rs3739071	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr2	239234109	rs6723560	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.52;ReadPosRankSum=0.191;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr2	239237751	rs3769110	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr2	239237974	rs17854985	T	C	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-1.321;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:57,54:0.49:111
chr2	239242458	rs68068974	T	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr2	239242719	rs5839695	G	GT	247.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.64;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr2	239246965	rs3077556	TATA	T	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr2	239253224	rs58277463	A	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:67,54:0.45:121
chr2	239256279	rs6709551	A	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr2	239264805	rs67040560	C	CA	928.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:47,39:0.45:86
chr2	239307245	rs571820	A	G	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	239976697	rs113824469	T	TTATTA	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr2	239990003	rs62189533	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr2	240003870	rs1063639	G	A	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr2	240016488	rs62189551	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr2	240024654	rs6543510	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	240029736	rs7585225	T	C	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=0.459;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr2	240048481	rs35504237	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr2	240048568	rs12998494	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr2	240055901	rs2278778	G	A	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr2	240066417	rs2290087	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:70,81:0.54:151
chr2	240066526	rs2290088	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr2	240078587	rs5839723	GAC	G	1399.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr2	240083528	rs3791515	G	A	5805.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:299,289:0.49:588
chr2	240083731	rs3828216	C	T	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:86,68:0.44:154
chr2	240085403	rs11124182	C	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr2	240085674	rs13010577	C	T	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.614;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr2	240111477	rs531993	A	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr2	240158529	rs3842554	A	AAGAAAATCAAAGATCCTT	436.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr2	240323661	rs1709851	C	A	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-1.972;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:77,60:0.44:137
chr2	240500173	rs10187580	T	C	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	240500249	rs59626274	C	T	9141.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr2	240500413	rs6543554	A	G	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr2	240500437	rs10180205	C	T	7342.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr2	240504878	rs6719279	C	T	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr2	240702216	rs11884577	C	G	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	240721384	rs2898872	C	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr2	240900607	rs138479490	TG	T	2759.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:127,137:0.52:264
chr2	240909304	rs34036698	CAG	C	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,40:0.45:89
chr2	240921463	rs4149551	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr2	240922822	rs958960	C	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr2	240923050	rs1530144	C	T	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:145,133:0.48:278
chr2	240923146	rs6716293	TC	CT	3397.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	0/1:92,89:0.49:181
chr2	240946766	rs13848	T	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.594;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr2	240954110	rs2289407	A	G	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.330;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:99,89:0.47:188
chr2	240958129	rs4149540	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr2	240961728	rs2083411	T	C	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:226,202:0.47:428
chr2	240961852	rs7596788	A	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:94,77:0.45:171
chr2	240969312	rs10187574	A	G	934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=6.610;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-0.818;QD=9.08;ReadPosRankSum=-0.856;SOR=1.357;set=HC	GT:AD:AF:DP	0/1:59,44:0.43:103
chr2	240969483	rs145620667	G	A	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=39.51;MQRankSum=0.869;QD=14.91;ReadPosRankSum=-0.640;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr2	240981179	rs6731916	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	240981375	rs6732185	T	A	7729.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.149;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=3.351;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.000;QD=25.34;ReadPosRankSum=1.283;SOR=0.482;set=HC	GT:AD:AF:DP	1/1:1,304:1.00:305
chr2	240982052	.	C	G	157	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=24;MQ=42.23;NF=8;NR=2;PP=157;QD=19.1771212547;SC=GAGGCATGGACGAAGGGCCGT;SbPval=0.89;Source=Platypus;TC=44;TCF=29;TCR=15;TR=10;WE=240982060;WS=240982042;set=Platypus	GT:AD:AF:DP	0/1:34,10:0.23:44
chr2	240982059	.	CCGTGGGTG	C	326.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=2.396;QD=6.53;ReadPosRankSum=0.237;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr2	240982068	.	AAGAGGCATGGACGAAGGGCCGTGGGTGAAGAGGCATGGACGAAGGGCC	A	287.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=1.957;QD=4.50;ReadPosRankSum=-0.410;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr2	240982228	rs10439373	C	T	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr2	240982362	.	G	GGCCGTGGATGAAGA	1597.73	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr2	240984833	rs13389099	C	G	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:75,81:0.52:156
chr2	240985099	rs150098707	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=9.98;ReadPosRankSum=0.507;SOR=3.477;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr2	240985347	rs13030992	G	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.159;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=10.383;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-5.916;QD=1.40;ReadPosRankSum=-0.073;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:141,27:0.16:168
chr2	240985511	rs10933560	A	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr2	241066280	rs4292120	C	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:110,103:0.48:213
chr2	241066395	rs76780618	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr2	241069263	.	G	A	1120.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr2	241073170	rs747741	C	T	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr2	241073450	rs3749078	C	T	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr2	241075809	rs13406410	C	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr2	241079884	rs508944	A	T	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr2	241375527	rs2352823	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	241389953	.	C	G	2672.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:37,124:0.77:161
chr2	241390516	rs3828336	C	T	3303.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:28,133:0.83:161
chr2	241392491	rs4268920	A	G	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr2	241395353	rs12695019	A	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	241395500	rs71428439	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.336;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr2	241395503	rs2292832	T	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr2	241401566	rs35971355	G	A	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-0.183;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr2	241401741	rs1042829	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-2.356;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr2	241403955	rs3830536	GTGACGCCTGCGTGTGCGTGTCAACGCCTGTGTGCGCGCGT	G	4233.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:41,105:0.72:146
chr2	241404213	rs41266965	T	C	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:34,121:0.78:155
chr2	241405400	rs10700206	C	CGTG	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr2	241405479	rs1126920	C	T	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.412;QD=1.38;ReadPosRankSum=-1.842;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr2	241405485	rs2228330	C	T	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,42:0.84:50
chr2	241405528	rs2228331	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr2	241405608	rs1042841	A	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.317;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:131,36:0.22:167
chr2	241405864	rs11892254	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	241440020	rs12986801	T	C	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.473;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:175,42:0.19:217
chr2	241448660	rs59967171	G	GGATA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=2.440;QD=7.58;ReadPosRankSum=0.783;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr2	241452198	rs12695025	T	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.652;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.152;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:118,29:0.20:147
chr2	241452212	rs12695026	T	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.822;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:147,31:0.17:178
chr2	241500508	rs10933615	T	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.35;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr2	241531737	rs2975762	A	G	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr2	241533845	rs2975763	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr2	241537421	rs3749166	G	A	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr2	241537617	rs58715822	TC	T	1450.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr2	241538074	rs2975766	A	G	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr2	241538229	rs2975767	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr2	241569692	rs3749171	C	T	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr2	241570391	rs2975786	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241619674	rs202221536	C	T	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.27;MQRankSum=-0.114;QD=12.60;ReadPosRankSum=-1.352;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr2	241619686	rs200371460	C	A	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.23;MQRankSum=-0.030;QD=10.62;ReadPosRankSum=-0.758;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr2	241621799	rs201917032	GC	G	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.24;MQRankSum=1.111;QD=25.07;ReadPosRankSum=0.967;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr2	241621869	rs74882485	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr2	241622195	rs184458523	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr2	241622209	rs4081908	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr2	241627928	rs1560619	A	G	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr2	241631476	rs4328629	C	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr2	241659368	rs6437368	C	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	241666418	rs2060194	G	A	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	241674222	rs3755533	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	241684660	rs1529665	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr2	241696840	rs10594016	ATCC	A	3730.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;QD=41.45;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:2,88:0.98:90
chr2	241700676	rs35945835	G	A	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:18,76:0.81:94
chr2	241702561	rs11688298	T	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr2	241706158	.	T	TCA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.08;MQRankSum=0.489;QD=6.22;ReadPosRankSum=2.369;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	241706160	.	T	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.01;MQRankSum=0.489;QD=7.35;ReadPosRankSum=1.930;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr2	241706162	.	T	TCACACA	190.73	.	AC=1;AF=0.500;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.01;QD=31.79;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr2	241706164	rs35734942	T	A	226.84	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.01;QD=37.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	241706164	.	TCT	ACA	769	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=0.9997;HP=2;HapScore=4;MGOF=33;MMLQ=26;MQ=57.77;NF=10;NR=1;PP=769;QD=74.7698068057;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.81;Source=Platypus;TC=21;TCF=18;TCR=3;TR=11;WE=241706174;WS=241706152;set=Platypus	GT:AD:AF:DP	1/1:10,11:0.52:21
chr2	241706166	rs10804413	T	A	438.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.94;QD=39.88;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	241708675	rs2288753	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr2	241713429	rs2288751	T	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	241713646	rs1063353	A	G	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr2	241722445	rs2288750	G	A	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr2	241722613	rs2288749	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	241723427	rs2288748	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	241726646	rs2288746	A	G	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr2	241728843	rs2288745	C	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	241737017	rs10167412	C	A	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr2	241808825	rs140694338	AGGCCTCCCT	A	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr2	241810957	rs10196315	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr2	241812566	rs12997245	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr2	241815308	rs12464426	A	G	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,151:0.99:153
chr2	241815473	rs12695032	G	A	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr2	241816545	rs6732985	C	T	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr2	241818279	rs4273214	C	A	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr2	241827696	rs4675869	A	G	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr2	241828012	rs6708304	T	C	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr2	241828034	rs6707568	A	G	5159.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr2	241830944	rs10171053	G	T	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr2	241830969	rs10171067	G	A	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr2	241831005	rs10195453	C	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr2	241831264	rs6737320	G	A	11491.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr2	241831296	rs6709469	C	G	10072.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr2	241831471	rs6709742	CA	TG	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	241834770	rs4293565	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr2	241834944	rs4468809	T	C	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr2	241835379	rs12105122	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr2	241835421	rs13426919	A	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	241835432	rs10933514	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr2	241859255	rs4675790	T	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	241865156	rs4675847	T	C	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.834;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr2	241869378	rs6756731	A	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr2	241874559	rs12618707	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr2	241898947	.	G	T	26	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=16;MQ=60.0;NF=1;NR=4;PP=26;QD=12.1542425094;SC=GAGTGGGGGTGCCAGGAGGAA;SbPval=0.87;Source=Platypus;TC=26;TCF=9;TCR=17;TR=5;WE=241898955;WS=241898937;set=Platypus	GT:AD:AF:DP	0/1:21,5:0.19:26
chr2	241904001	rs11688859	G	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.624;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.487;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr2	241905779	rs12466789	A	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=2.142;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:163,28:0.15:191
chr2	241925219	rs4675836	C	T	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr2	241925343	rs4675835	T	C	3033.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:26,126:0.83:152
chr2	241929228	rs10200024	A	G	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.06;ReadPosRankSum=0.954;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:12,55:0.82:67
chr2	241976615	rs34203344	CG	C	959.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.347;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:150,45:0.23:195
chr2	241979550	rs7571117	T	C	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=4.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-1.481;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:145,40:0.22:185
chr2	241979881	rs115290104	C	T	1142.88	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,48:0.87:55
chr2	241991029	rs10206324	A	G	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.293;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr2	242004199	rs2286319	G	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.505;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:118,34:0.22:152
chr2	242004219	rs11464431	T	TG	7402.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr2	242009273	rs13000549	G	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr2	242011151	rs6760731	A	G	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr2	242011330	rs6746124	C	A	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=5.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.328;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:299,67:0.18:366
chr2	242072280	rs11684830	G	A	2815.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:29,120:0.81:149
chr2	242077496	rs1470414	C	T	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:22,108:0.83:130
chr2	242079007	rs2074828	A	G	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:30,138:0.82:168
chr2	242082222	rs2074834	C	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr2	242082262	rs6709462	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr2	242082480	rs758068	A	C	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=0.762;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,31:0.78:40
chr2	242082559	rs2066941	T	C	300.22	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr2	242088921	rs3806599	A	C	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr2	242099961	rs2017989	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	242121959	rs34186191	G	A	585.90	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr2	242122602	rs1974555	T	G	42.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=1.150;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr2	242139491	rs2013250	C	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:27,98:0.78:125
chr2	242141719	rs2074840	C	T	2434.31	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:14,107:0.88:121
chr2	242142737	rs1179530	T	C	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr2	242149073	rs10192730	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr2	242151585	rs7593101	C	T	5007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.70;ReadPosRankSum=0.784;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:51,232:0.82:283
chr2	242151748	rs7566006	G	C	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr2	242157228	rs78605785	G	T	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:39,151:0.79:190
chr2	242157565	.	C	CG	97	.	AC=2;AF=1.00;AN=2;BRF=0.62;FR=1.0000;HP=11;HapScore=2;MGOF=2;MMLQ=23;MQ=40.68;NF=4;NR=0;PP=97;QD=30.0;SC=AGGGGCGGGGCGGGGGGGCAG;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=242157573;WS=242157555;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr2	242163359	rs7590653	G	A	3761.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:42,159:0.79:201
chr2	242179134	rs10153800	G	A	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:27,174:0.87:201
chr2	242192848	rs7578199	T	C	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:21,105:0.83:126
chr2	242203916	rs11891776	A	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr2	242206956	rs35334418	C	T	3078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=1.074;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:41,139:0.77:180
chr2	242255830	rs13006939	C	T	2575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.66;ReadPosRankSum=2.187;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:21,117:0.85:138
chr2	242259614	rs6745662	G	A	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-0.886;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr2	242283071	rs6750169	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr2	242283094	rs6707518	A	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr2	242289663	rs3217007	C	CATT	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr2	242374215	rs35614125	C	T	201.22	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr2	242374519	rs34882686	C	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr2	242396033	rs2074775	A	G	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:10,72:0.88:82
chr2	242396087	rs2074774	A	T	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:28,176:0.86:204
chr2	242402061	rs13011791	T	A	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:15,82:0.85:97
chr2	242407478	rs10933558	A	G	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,60:0.82:73
chr2	242407746	rs10933559	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:21,69:0.77:90
chr2	242432704	rs2271030	G	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr2	242433348	rs2018761	A	G	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.136;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr2	242440221	rs13013693	G	A	4036.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:35,175:0.83:210
chr2	242573211	rs7424328	T	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:22,114:0.84:136
chr2	242577022	rs4675796	C	T	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:10,56:0.85:66
chr2	242590237	rs4464318	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr2	242594622	rs6712888	C	T	1177.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.65;ReadPosRankSum=-1.152;SOR=0.664;set=HC	GT:AD:AF:DP	1/1:4,48:0.92:52
chr2	242658779	rs71351113	A	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr2	242659554	rs34766121	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr2	242662761	rs7572153	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr2	242674803	rs77940364	G	A	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.214;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:136,26:0.16:162
chr2	242674959	rs62191977	T	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=2.043;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr2	242680366	rs4073890	A	G	419.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.581;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr2	242680430	rs4073889	A	G	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.283;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:174,50:0.22:224
chr2	242682029	rs78147778	T	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.947;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:105,30:0.22:135
chr2	242684115	rs4234097	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-0.765;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr2	242684394	rs4675884	G	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr2	242688292	rs34767042	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=1.463;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr2	242688366	rs35386923	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr2	242688434	rs34077392	T	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr2	242688442	rs35249772	T	TC	65.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr2	242688672	rs78280775	C	T	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.507;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:124,29:0.19:153
chr2	242688870	rs113047262	T	C	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.637;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:127,38:0.23:165
chr2	242690675	rs1106639	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.610;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:124,28:0.18:152
chr2	242694638	.	GTGTCCTTCCCTCCCCCGTGGCCCACCCACCA	G	7269.73	.	AC=1;AF=0.500;AN=2;DP=266;set=Intersection	GT:AD:AF:DP	0/1:37,199:0.84:236
chr2	242707101	rs6756901	A	G	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=1.400;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:173,33:0.16:206
chr2	242813124	rs13016102	T	C	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	239555	rs58240971	C	CT	890.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.732;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:54,77:0.59:131
chr3	386520	rs1499046	C	T	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	391100	rs13060847	A	G	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.509;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	402273	rs5845966	C	CT	319.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.99;ReadPosRankSum=3.694;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr3	403288	rs9824311	G	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=4.014;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	403297	rs9839027	C	A	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.640;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	403308	rs9824442	G	A	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	403345	rs9846775	A	G	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	404771	rs4684390	C	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	417994	rs930237	A	G	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	439963	rs6442827	A	G	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	440028	rs6771714	T	C	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	440088	rs6771803	T	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	447069	rs11705894	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	1215013	rs7632166	A	C	3988.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:116,188:0.62:304
chr3	1215083	rs13077503	C	A	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:59,80:0.58:139
chr3	1262474	rs2013828	T	C	4715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=1.247;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:115,227:0.66:342
chr3	1269763	rs60719807	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr3	1320271	rs3732517	G	A	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	1337203	rs565499	A	G	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	1339680	rs10558016	GGTTTTT	G	965.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr3	1424850	rs2291100	T	G	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr3	2613084	rs189339886	C	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr3	2671119	rs1351277	A	T	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:54,83:0.61:137
chr3	2777622	rs1554198	A	G	6992.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	2908667	rs35239662	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr3	2924986	rs13089241	A	G	2851.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:66,127:0.66:193
chr3	2928672	rs36013854	A	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr3	3030223	rs13068264	C	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:30,72:0.71:102
chr3	3076218	rs9845519	G	A	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr3	3076284	rs6765545	G	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:158,68:0.30:226
chr3	3076401	rs6790908	C	T	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.164;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:315,120:0.28:435
chr3	3076443	rs6803232	A	G	1186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.236;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:258,86:0.25:344
chr3	3080527	rs163543	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	3081750	rs6802588	A	T	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr3	3081825	rs339285	T	C	6997.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	3115478	rs163897	T	C	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	3115514	rs340807	C	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:87,38:0.30:125
chr3	3137155	rs11389765	A	AT	696.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr3	3139383	rs334802	C	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	3143267	rs6771148	G	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr3	3170792	rs334773	C	T	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	3170910	rs334772	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	3171460	rs334769	C	T	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	3171502	rs334768	C	A	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	3171713	rs113671187	G	GCCTGACT	5692.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	3179262	rs334767	A	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	3189059	rs1621648	T	C	98.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	3189279	rs1705805	A	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	3189398	rs1669348	A	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	3192524	rs4183	A	ATAAC	2419.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	3193957	rs1705800	A	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	3193993	.	T	C	404.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr3	3196273	rs11300080	AT	A	644.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	3197871	rs1705789	T	C	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	3215954	rs1669321	A	G	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	3217128	rs11332452	AT	A	101.84	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr3	3221430	rs1672753	C	T	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	3886580	rs4685689	A	G	10667.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr3	3886721	rs3749350	C	A	6845.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:203,308:0.60:511
chr3	3886847	rs3749349	G	C	6918.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:177,303:0.63:480
chr3	3886919	rs3749348	C	T	7633.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:207,348:0.63:555
chr3	3887876	rs2120609	T	C	1972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-1.533;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:238,114:0.32:352
chr3	4046849	rs12490386	A	G	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr3	4110440	rs34308595	T	TAAG	681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.263;QD=9.34;ReadPosRankSum=0.720;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr3	4358210	rs7647539	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr3	4403767	rs2819561	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr3	4403817	rs2633851	TT	AC	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.232;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.37;ReadPosRankSum=-0.147;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr3	4403837	rs2633852	A	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr3	4404087	rs2819560	A	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.313;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=0.075;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr3	4452737	rs813811	G	A	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:89,51:0.36:140
chr3	4461569	rs711667	G	A	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	4461698	rs711666	C	T	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	4562667	rs1038639	T	G	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	4687470	rs5846330	G	GCT	1968.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:9,60:0.87:69
chr3	4687548	rs4271897	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.27;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	4687577	rs4303850	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	4693656	rs6442894	C	T	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	4693937	rs6442895	G	C	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	4694010	rs6442896	A	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	4712413	rs2306875	G	A	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.115;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:37,54:0.59:91
chr3	4722532	rs9866640	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr3	4725619	rs3215005	CA	C	2564.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	4732670	rs4685801	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr3	4738774	rs3749382	A	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr3	4738999	rs149795767	G	GGTGT,GGTGTGT	2017.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=160;set=Intersection	GT:AF:DP	1/2:0.54,0.41:46
chr3	4741787	.	G	A	248.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr3	4753712	rs2306881	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr3	4767262	rs7613447	T	C	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	4776784	rs11920001	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr3	4817057	rs6442905	T	C	9964.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	4829732	rs13079522	A	G	9875.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr3	4842231	rs2291862	C	T	5433.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:123,247:0.67:370
chr3	4856180	rs711631	T	C	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	4856234	rs901854	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.07;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	4856993	rs6442911	C	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	4859725	rs9844268	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	4867510	rs1051559	A	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=2.039;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:111,36:0.24:147
chr3	4872790	.	GTCTC	G	254	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=4;HapScore=1;MGOF=48;MMLQ=23;MQ=58.65;NF=2;NR=22;PP=254;QD=10.75;SC=GTCTGTCTTTGTCTCTCTCTC;SbPval=0.45;Source=Platypus;TC=47;TCF=3;TCR=44;TR=24;WE=4872801;WS=4872780;set=Platypus	GT:AD:AF:DP	1/0:23,24:0.51:47
chr3	4872813	rs5018278	T	A	944.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=39.36;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	4872815	rs5018277	T	A	1258.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.20;QD=40.60;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	4878419	rs80218153	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=0.543;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr3	4927281	rs4685841	T	C	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	4927308	rs6794077	A	G	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	4940658	rs140319238	C	CAGAGAGAGAGAG	1072.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;QD=35.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	4942300	rs3762783	T	C	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr3	4942430	rs3762784	G	A	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	5021403	rs2271566	C	T	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:60,100:0.62:160
chr3	5022961	rs13076468	A	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	5022981	rs34085319	CT	C	1011.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr3	5023221	rs78035155	T	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:102,68:0.40:170
chr3	5024415	rs11398309	A	AT	204.27	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:2,13:0.87:15
chr3	5024771	rs908078	T	C	9519.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:246,428:0.64:674
chr3	5025514	.	G	GGTGTGTGTGT	445	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=24;MMLQ=23;MQ=60.51;NF=1;NR=24;PP=445;QD=17.96;SC=GCAGATTCAGGGTGTGTGTGT;SbPval=0.5;Source=Platypus;TC=36;TCF=1;TCR=35;TR=25;WE=5025522;WS=5025504;set=Platypus	GT:AD:AF:DP	0/1:11,25:0.69:36
chr3	5214126	rs2270750	G	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	5241223	rs377120	C	T	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	5241309	rs410509	C	A	8513.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:1,316:1.00:317
chr3	5249962	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=5.816;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.896;QD=0.36;ReadPosRankSum=-0.649;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:117,25:0.18:142
chr3	5291964	rs150680641	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.751;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr3	6903297	rs3749380	C	T	16255.77	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr3	6903601	rs342034	A	G	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	7188116	rs3749448	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:10,38:0.79:48
chr3	7348129	rs17047071	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	7456675	rs712774	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr3	7494245	rs111752136	TTG	T	1130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.24;ReadPosRankSum=1.244;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:13,49:0.79:62
chr3	7494417	rs2229902	A	T	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:28,89:0.76:117
chr3	7620789	rs1485175	T	C	9615.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	7678010	rs7611935	G	A	8209.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr3	7678090	rs7612048	G	A	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	7678134	rs17047754	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	7732726	rs5846531	AT	A	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr3	8299404	rs145434533	AGAAGGAAGGAAGGAAGGAAGGAAG	A	1591.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=44.21;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	8299494	.	G	GGAAGGAAAGAAA	1003.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	8299551	rs4627748	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=36.08;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	8299573	rs145550573	A	AAG	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.64;QD=37.69;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	8299597	.	A	AAG	272.80	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.82;QD=38.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	8299603	.	G	GGA	273.79	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.66;QD=39.11;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	8299606	.	A	G	282.82	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.66;QD=40.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	8299641	.	G	GGAAGGAAGGAAGGAAC	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.892;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=12.175;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-2.484;QD=34.78;ReadPosRankSum=3.067;SOR=3.903;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	8543713	rs5846598	G	GT	5178.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	8667896	rs355058	T	C	31562.77	.	AC=2;AF=1.00;AN=2;DB;DP=1187;set=Intersection	GT:AD:AF:DP	1/1:0,1185:1.00:1185
chr3	8669367	rs5846608	TG	T	12289.73	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr3	8675778	rs11131140	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr3	8676204	rs3774210	A	G	11172.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr3	8676945	rs3816911	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:107,59:0.36:166
chr3	8705555	rs34054872	T	C	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:102,71:0.41:173
chr3	8757311	rs17049469	G	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr3	8757377	rs62242588	A	G	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.441;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:115,46:0.29:161
chr3	8757547	rs62242589	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	8775457	rs2072583	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,47:0.80:59
chr3	8775589	rs1974763	C	T	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=556;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.903;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:399,157:0.28:556
chr3	8775702	rs11922879	G	A	9334.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:159,408:0.72:567
chr3	8784046	rs58914034	C	CAA,CAAA	1920.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=24.01;ReadPosRankSum=-0.120;SOR=1.090;set=HC	GT:AD:AF:DP	1/2:11,21,48:0.26,0.60:80
chr3	8787123	rs13060135	G	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr3	8787164	rs139242554	AAGCGGGTGGCTTCTGTG	A	1910.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:103,54:0.34:157
chr3	8787189	rs57159780	G	C	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:67,106:0.61:173
chr3	8787220	rs13087941	T	C	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	8809184	rs237902	G	A	10363.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:202,446:0.69:648
chr3	8809703	rs2228485	G	A	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	8931984	rs656626	A	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr3	8932189	rs607531	C	T	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=1.120;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:35,49:0.58:84
chr3	8943988	rs464302	C	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr3	8955240	rs430781	T	C	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-0.124;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:22,40:0.65:62
chr3	8955389	rs373572	C	T	1622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=1.110;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:35,77:0.69:112
chr3	8988809	rs689296	C	T	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.38;ReadPosRankSum=1.035;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	9005078	rs615967	C	T	6628.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:107,292:0.73:399
chr3	9027704	rs341785	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr3	9055293	rs35295033	G	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr3	9066853	rs421041	T	C	8163.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:167,368:0.69:535
chr3	9069747	rs416685	A	G	3088.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:76,146:0.66:222
chr3	9069873	rs10510396	A	G	4143.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:100,186:0.65:286
chr3	9074617	rs9839715	C	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	9089254	rs2244864	C	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	9091151	rs610457	C	G	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.747;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:171,54:0.24:225
chr3	9102112	rs59248524	C	CTTTTT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.449;QD=10.99;ReadPosRankSum=-2.190;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr3	9102137	rs6775479	G	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	9122948	rs2664089	A	G	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	9123116	rs2669986	C	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	9123134	rs2664088	A	G	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	9290468	.	T	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-1.240;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr3	9406704	rs11547584	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:78,36:0.32:114
chr3	9425944	rs1046788	G	C	2518.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,117:0.59:197
chr3	9426224	rs1129174	G	A	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:19,56:0.75:75
chr3	9489767	rs2258735	T	C	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	9495385	rs2648580	A	G	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:67,127:0.65:194
chr3	9514856	rs3915844	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	9517369	rs11542009	C	T	3383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.769;ClippingRankSum=0.000;DB;DP=871;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.708;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:636,232:0.27:868
chr3	9547950	rs2625890	G	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.11;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	9547959	rs2625889	C	T	6588.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=1.852;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	9691548	rs62245609	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.983;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr3	9730529	.	G	GT	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.254;QD=0.30;ReadPosRankSum=-0.157;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:286,56:0.16:342
chr3	9743398	rs144534173	TGGAG	T	6001.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	9747392	rs78883514	G	C	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.542;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=5.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=-2.725;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:220,116:0.35:336
chr3	9757086	rs697820	C	G	4758.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:90,209:0.70:299
chr3	9757511	rs3914774	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	9775730	rs13085155	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr3	9783147	rs696513	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr3	9798140	rs2072668	C	G	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.221;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:228,93:0.29:321
chr3	9798773	rs1052133	C	G	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.293;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:309,107:0.26:416
chr3	9801080	rs2304277	G	A	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr3	9803126	rs17252807	A	G	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr3	9821914	rs14204	C	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr3	9822275	rs3868897	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	9823302	rs6443264	T	G	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-2.175;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr3	9828676	rs7621556	G	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:47,47:0.50:94
chr3	9829171	rs2290309	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr3	9829226	rs293786	A	C	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:42,51:0.55:93
chr3	9841989	rs6443266	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	9852059	rs34761997	C	CGAT	3696.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	9852148	rs9827444	G	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr3	9857708	rs139657148	C	A	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:95,59:0.38:154
chr3	9859456	rs3806672	C	G	1614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=4.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.463;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:38,76:0.67:114
chr3	9859460	rs3806671	C	T	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.790;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:71,38:0.35:109
chr3	9860623	rs3806668	T	G	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.110;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:254,90:0.26:344
chr3	9867625	rs3732527	C	T	8010.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:179,365:0.67:544
chr3	9868577	rs12490900	A	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	9870857	rs2290303	G	A	7736.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:150,346:0.70:496
chr3	9871030	rs2290305	T	G	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:36,84:0.70:120
chr3	9874670	rs7622954	G	A	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr3	9876295	rs35783864	G	A	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-0.305;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:266,128:0.32:394
chr3	9876301	rs13088594	G	T	13587.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr3	9885022	rs3846165	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	9885109	rs57223920	C	T	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:263,108:0.29:371
chr3	9885615	rs2290306	G	C	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:372,179:0.32:551
chr3	9896351	rs279563	A	G	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr3	9908935	rs17222536	G	A	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=1.500;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:44,78:0.64:122
chr3	9918861	rs456168	C	A	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr3	9932337	rs279558	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr3	9934605	rs279553	T	C	1787.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:168,99:0.37:267
chr3	9944167	rs279589	G	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.275;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr3	9944937	rs279588	G	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:53,16:0.23:69
chr3	9947864	rs279583	T	C	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-1.879;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr3	9947898	rs279582	T	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.115;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr3	9947997	rs279581	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,21:0.32:66
chr3	9951038	rs142612801	TAC	T	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.788;QD=2.73;ReadPosRankSum=-0.113;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:244,62:0.20:306
chr3	9952706	rs279572	A	G	2006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.755;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:298,127:0.30:425
chr3	9952788	rs279571	T	C	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:259,118:0.31:377
chr3	9956279	rs455863	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:247,126:0.34:373
chr3	9957455	rs1056286	C	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:153,66:0.30:219
chr3	9960070	rs708567	C	T	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr3	9962157	rs783494	T	C	1861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=1.098;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:193,104:0.35:297
chr3	9962767	rs34198416	TATTC	T	343.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr3	9962816	rs376511	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr3	9970031	rs279549	A	G	15377.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr3	9970158	rs279548	C	T	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:303,160:0.35:463
chr3	9970442	rs279547	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr3	9972493	rs279545	G	A	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	9975247	rs183956	C	G	8650.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr3	9976084	rs200763695	T	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:95,36:0.27:131
chr3	9976159	rs279552	A	G	11521.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr3	9991388	rs279601	G	C	9473.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	10030236	rs496181	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.64;QD=31.40;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	10085035	rs803335	G	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	10088223	rs200221245	T	G	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-3.544;QD=3.73;ReadPosRankSum=-2.369;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr3	10088239	rs201770712	G	A	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-3.707;QD=11.04;ReadPosRankSum=-3.000;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:93,42:0.31:135
chr3	10088242	rs199726231	G	A	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-3.770;QD=10.22;ReadPosRankSum=-1.994;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:101,44:0.30:145
chr3	10088266	rs72492997	G	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:126,85:0.40:211
chr3	10088299	rs112887807	C	T	4223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.051;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-3.078;QD=15.36;ReadPosRankSum=1.904;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:162,113:0.41:275
chr3	10088308	rs72492998	T	C	4424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.905;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-3.515;QD=15.36;ReadPosRankSum=1.183;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:164,124:0.43:288
chr3	10088343	rs73126218	A	G	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:165,134:0.45:299
chr3	10088404	.	C	T	2115.77	.	AC=1;AF=0.500;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	0/1:89,59:0.40:148
chr3	10088406	.	TAGTA	T	2944	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=28;MQ=43.93;NF=3;NR=32;PP=2944;QD=20;SC=GTTCATTACTTAGTAAGTGTC;SbPval=0.44;Source=Platypus;TC=100;TCF=7;TCR=93;TR=35;WE=10088430;WS=10088394;set=Platypus	GT:AD:AF:DP	0/1:65,35:0.35:100
chr3	10088407	.	AG	A	2109.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=47.86;MQRankSum=-6.182;QD=14.75;ReadPosRankSum=-0.159;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:86,57:0.40:143
chr3	10088409	rs375350046	TAAG	T	2047.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-6.288;QD=14.52;ReadPosRankSum=-0.007;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:86,55:0.39:141
chr3	10088422	rs144167368	C	T	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.18;MQRankSum=-6.894;QD=14.90;ReadPosRankSum=-0.146;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:71,47:0.40:118
chr3	10088443	rs145517746	C	A	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.942;MLEAC=1;MLEAF=0.500;MQ=47.92;MQRankSum=-4.956;QD=12.74;ReadPosRankSum=-0.126;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr3	10088443	.	CA	AG	1483	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=5;HapScore=1;MGOF=45;MMLQ=28;MQ=42.38;NF=14;NR=29;PP=1483;QD=35.7318110433;SC=TAATCTAAAACAGAAAGCTTT;SbPval=0.52;Source=Platypus;TC=100;TCF=32;TCR=68;TR=43;WE=10088452;WS=10088433;set=Platypus	GT:AD:AF:DP	1/0:57,43:0.43:100
chr3	10088444	rs142624538	A	G	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=47.90;MQRankSum=-4.803;QD=13.20;ReadPosRankSum=-0.669;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:52,31:0.37:83
chr3	10088461	rs150415982	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr3	10089723	rs12330369	G	A	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.482;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-3.602;QD=8.62;ReadPosRankSum=-2.463;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:117,94:0.45:211
chr3	10089738	rs62245508	A	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:117,105:0.47:222
chr3	10089749	rs12330599	T	C	2024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.482;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-4.571;QD=8.84;ReadPosRankSum=0.668;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:126,103:0.45:229
chr3	10089772	rs79830642	CA	GG	1639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.519;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-4.793;QD=8.08;ReadPosRankSum=3.306;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:116,87:0.43:203
chr3	10089775	rs75389047	A	G	3355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-4.741;QD=16.78;ReadPosRankSum=3.449;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:112,88:0.44:200
chr3	10089815	rs77169020	A	C	2159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-4.164;QD=19.46;ReadPosRankSum=-1.685;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:52,59:0.53:111
chr3	10089818	rs78988497	C	T	2112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-4.418;QD=20.51;ReadPosRankSum=-0.947;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:51,52:0.50:103
chr3	10089828	rs77263972	G	A	1719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-4.902;QD=19.54;ReadPosRankSum=-0.690;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr3	10089834	rs74351786	A	T	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-4.659;QD=18.23;ReadPosRankSum=-0.812;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:44,39:0.47:83
chr3	10089841	rs74509181	C	A	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-5.191;QD=16.97;ReadPosRankSum=-0.299;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:42,33:0.44:75
chr3	10089852	rs75274508	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr3	10089886	rs73811818	G	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr3	10103931	.	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.632;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.705;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr3	10105661	rs369470214	CT	C	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.262;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=28.433;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-10.345;QD=0.79;ReadPosRankSum=-2.428;SOR=2.645;set=HC	GT:AD:AF:DP	0/1:249,34:0.12:283
chr3	10128965	.	CT	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.495;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.147;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr3	10142949	rs3172417	C	T	8796.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.34;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr3	10186447	rs1678593	A	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	10186514	rs779811	T	A	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	10188428	rs1678607	T	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	10189929	rs1681660	T	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	10219510	rs1711109	C	T	2582.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:289,144:0.33:433
chr3	10219729	rs1681663	A	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	10241987	rs263410	A	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	10242243	rs263411	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr3	10251196	rs459864	A	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	10254797	rs11465897	C	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:32,7:0.18:39
chr3	10258493	rs2302862	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	10258514	rs2302861	T	C	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	10258762	rs2302860	G	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	10261237	rs3895949	A	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	10261248	rs3895948	T	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	10261294	rs3895947	A	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.36;SOR=1.549;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	10261294	.	AC	GC,GT	897	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=24;MMLQ=22;MQ=60.0;NF=69,26;NR=30,13;PP=897,459;QD=9.41183042977;SC=GAGCCACCGCACCTGGCTGCC;SbPval=0.54;Source=Platypus;TC=102;TCF=71;TCR=31;TR=99,39;WE=10261303;WS=10261284;set=Platypus	GT:AF:DP	0/1:0.97:102
chr3	10261295	rs11465909	C	T	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-0.190;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:68,48:0.41:116
chr3	10261329	rs144185216	G	A	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:75,102:0.58:177
chr3	10261594	rs11465911	C	T	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=-0.442;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:13,40:0.75:53
chr3	10264480	rs3844283	C	G	3193.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:79,138:0.64:217
chr3	10276163	rs708035	T	A	6063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.108;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:127,281:0.69:408
chr3	10280753	rs11465932	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr3	10283716	rs796552	A	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr3	10290839	rs2072577	G	A	4648.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:88,204:0.70:292
chr3	10302172	rs394558	G	A	5903.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:121,265:0.69:386
chr3	10302369	rs451952	T	C	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:74,123:0.62:197
chr3	10302395	rs439483	G	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:55,81:0.60:136
chr3	10302479	rs402330	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	10318230	rs3217211	A	AT	3578.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:80,114:0.59:194
chr3	10318275	.	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-1.031;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr3	10320865	rs2075355	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr3	10328250	rs35683	A	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr3	10342876	rs696221	C	T	5481.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:112,246:0.69:358
chr3	10346996	rs200033116	T	TA	683.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	10370486	rs4327369	G	C	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:86,178:0.67:264
chr3	10379923	rs35678	C	T	5702.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:173,262:0.60:435
chr3	10382111	rs171337	T	C	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:92,172:0.65:264
chr3	10382148	rs154242	G	A	4943.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:99,210:0.68:309
chr3	10387059	rs241509	C	A	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:135,205:0.60:340
chr3	10400643	rs28113	G	A	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr3	10401856	rs2278554	G	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr3	10419856	rs56113011	C	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr3	10420087	rs751122	T	C	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:68,133:0.66:201
chr3	10420875	rs4684686	G	A	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:61,114:0.65:175
chr3	10421107	rs7616000	A	G	3662.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:86,154:0.64:240
chr3	10427190	rs725027	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	10442779	rs26797	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:142,63:0.31:205
chr3	10452231	rs34907	G	A	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,28:0.82:34
chr3	10967739	rs2272395	T	C	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:223,116:0.34:339
chr3	10975745	rs2272399	C	T	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:274,134:0.33:408
chr3	11076400	rs35957531	C	G	11360.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr3	11300707	rs901865	T	C	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:61,107:0.64:168
chr3	11350553	rs2305686	C	T	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:112,182:0.62:294
chr3	11487891	rs2442798	G	A	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr3	11551856	rs369095431	TA	T	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=9.010;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.473;QD=1.58;ReadPosRankSum=0.488;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr3	11596302	rs8154	T	C	3845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.189;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:558,245:0.31:803
chr3	11596402	rs1046593	C	T	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:223,110:0.33:333
chr3	11600327	.	G	A	158.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr3	11606136	rs147002548	A	ATCCCTCACCACCTCCC	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.81;MQRankSum=1.267;QD=27.98;ReadPosRankSum=0.334;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	11643465	rs2276749	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	11667714	rs3856802	C	T	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr3	11685143	rs34152653	T	TA	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.771;QD=8.96;ReadPosRankSum=-1.319;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:14,22:0.61:36
chr3	11744544	rs11411195	G	GA	1473.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr3	11831953	rs9267	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr3	11880816	rs303862	C	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:10,47:0.82:57
chr3	11886365	rs392621	T	C	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:75,147:0.66:222
chr3	11886451	rs380999	G	A	3904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=1.141;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:91,183:0.67:274
chr3	11887991	rs408600	C	G	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:112,202:0.64:314
chr3	11912681	rs28417897	A	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	11912797	rs62246062	C	T	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.308;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=48.42;MQRankSum=-5.179;QD=9.85;ReadPosRankSum=-1.602;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:57,49:0.46:106
chr3	11912866	rs73813067	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.500;MQ=45.91;MQRankSum=-2.390;QD=4.63;ReadPosRankSum=-0.419;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr3	11924613	rs369394286	AG	A	1381.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.10;QD=30.04;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	11925136	rs423051	T	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.92;QD=27.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	11925489	rs2470561	C	T	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.06;QD=27.02;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	11925610	rs421090	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	12045891	rs79624759	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.13;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	12045899	rs77368781	C	T	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	12045923	rs73135622	A	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	12045986	rs67270413	G	A	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	12046013	rs72624441	A	C	9312.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr3	12046076	rs2618395	T	C	10242.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,400:1.00:400
chr3	12046168	.	A	C	389	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=2;HapScore=2;MMLQ=23;MQ=59.08;NF=2;NR=18;PP=389;QD=21.1885606274;SC=GCCTCGGCCTAGGCGGCGCCC;SbPval=0.6;Source=Platypus;TC=20;TCF=2;TCR=18;TR=20;WE=12046176;WS=12046158;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	12046297	.	A	C	203	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=4;HapScore=2;MGOF=49;MMLQ=23;MQ=60.0;NF=9;NR=6;PP=203;QD=15.8514141698;SC=GCAGCAGCTTATTCAGCTCGC;SbPval=0.58;Source=Platypus;TC=15;TCF=9;TCR=6;TR=15;WE=12046305;WS=12046287;set=Platypus	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	12046362	rs2923856	G	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	12046364	rs2923857	G	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.12;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	12046372	rs2623877	G	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	12046445	rs2600235	TT	GC	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	12202866	rs308950	C	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	12208652	rs795008	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	12208671	rs795009	G	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	12229015	rs794999	A	G	26330.77	.	AC=2;AF=1.00;AN=2;DB;DP=1006;set=Intersection	GT:AD:AF:DP	1/1:1,1002:1.00:1003
chr3	12232074	rs310764	A	G	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	12232208	rs310765	T	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	12537955	rs299651	T	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,26:0.40:65
chr3	12557936	rs376667792	AC	A	324.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.451;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=1.333;QD=14.12;ReadPosRankSum=0.222;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr3	12557938	rs369155945	AAAATATATG	A	325.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.735;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=1.283;QD=13.57;ReadPosRankSum=-0.147;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	12557945	rs68107346	ATGTG	A	268.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-1.606;QD=12.80;ReadPosRankSum=0.230;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr3	12560763	rs1618545	A	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.624;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:144,41:0.22:185
chr3	12570572	rs299632	C	T	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-0.257;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:146,72:0.33:218
chr3	12573998	rs167257	T	C	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr3	12598685	.	C	T	2848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DP=614;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.106;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:433,180:0.29:613
chr3	12598839	rs2255655	C	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr3	12613866	rs2648307	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.022;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:142,63:0.31:205
chr3	12616533	rs3773341	G	A	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	12617996	rs1542848	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr3	12618269	rs2442805	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:115,48:0.29:163
chr3	12645007	rs2596828	C	T	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=1.460;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:258,142:0.35:400
chr3	12647547	rs3214791	T	TG	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr3	12650482	rs2454440	T	A	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	12660291	rs3729926	C	T	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:39,82:0.68:121
chr3	12776428	rs3732687	A	C	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:149,85:0.36:234
chr3	12779409	rs2271209	A	G	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr3	12791172	rs937915	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	12810629	rs112818257	CCGGGACTGG	C	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=1.754;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr3	12848929	.	G	A	1497.77	.	AC=1;AF=0.500;AN=2;DP=286;set=Intersection	GT:AD:AF:DP	0/1:196,88:0.31:284
chr3	12872877	rs9814191	T	G	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.264;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:187,74:0.28:261
chr3	12872901	rs58996323	G	A	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.839;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:249,92:0.27:341
chr3	12873121	rs145605538	CCTCGGCCAGTCGTT	C	745.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr3	12877830	rs56204642	G	GT	1113.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr3	12880818	rs2290312	A	C	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.821;QD=2.98;ReadPosRankSum=1.477;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:230,70:0.23:300
chr3	12881233	rs3901334	A	G	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr3	12881757	rs7627602	C	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:127,54:0.30:181
chr3	12892035	rs143622059	GGGGAGA	G	991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=6.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.101;SOR=1.521;set=HC	GT:AD:AF:DP	0/1:77,30:0.28:107
chr3	12941094	rs3773308	G	A	1976.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:31,80:0.72:111
chr3	12942850	rs56387830	GC	G	5030.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	12944170	.	CAAAA	C	936.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=11.996;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.544;QD=14.86;ReadPosRankSum=0.050;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr3	12953388	rs113019446	C	T	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:3,38:0.93:41
chr3	12954868	rs2600322	A	G	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr3	12956531	rs2255964	G	A	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	12976863	rs2600206	T	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	12983423	rs72624443	C	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=-2.771;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	13008814	rs72624444	G	C	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,105:0.74:142
chr3	13359433	rs354477	G	A	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	13361238	rs2276748	C	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=1.371;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:124,62:0.33:186
chr3	13361287	rs354478	C	T	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:125,58:0.32:183
chr3	13361391	rs354479	A	G	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	13364876	rs514084	G	T	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:246,103:0.30:349
chr3	13367406	rs665064	C	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:107,53:0.33:160
chr3	13368892	rs2271509	G	A	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:55,95:0.63:150
chr3	13379400	rs3773302	C	T	5088.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:144,236:0.62:380
chr3	13379452	rs3773301	G	A	4772.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:119,234:0.66:353
chr3	13383322	rs151008831	C	T	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:123,61:0.33:184
chr3	13383540	rs2271504	A	G	6862.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:136,301:0.69:437
chr3	13393166	rs11292029	CT	C	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	13395475	rs2280085	G	C	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:62,92:0.60:154
chr3	13395579	rs2280084	C	A	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:57,124:0.69:181
chr3	13407556	rs3732671	T	C	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:77,135:0.64:212
chr3	13413499	.	C	T	829.77	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:77,42:0.35:119
chr3	13415146	rs6810356	G	T	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:70,136:0.66:206
chr3	13418086	rs6442377	C	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr3	13420624	rs6442378	G	A	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr3	13421150	rs7628051	C	T	3248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=3.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=2.978;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:72,147:0.67:219
chr3	13421320	rs7625586	T	C	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr3	13438830	rs13066607	A	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr3	13439005	rs7628923	A	G	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:188,90:0.32:278
chr3	13523010	rs2655218	T	C	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	13544593	rs76666620	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:112,47:0.30:159
chr3	13545697	rs17038240	C	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:139,59:0.30:198
chr3	13574068	rs35913726	AC	A	3295.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	13661047	rs2280304	A	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr3	13669537	rs1966825	T	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:22,79:0.78:101
chr3	13670481	rs2242023	A	G	6152.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:188,291:0.61:479
chr3	13670508	rs41283996	G	A	3609.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:307,192:0.38:499
chr3	13670536	rs9843344	A	G	6785.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:190,301:0.61:491
chr3	13670776	rs4684968	T	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:71,113:0.61:184
chr3	13670837	rs4684969	T	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr3	13671183	rs877432	T	A	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr3	13672392	rs3773258	G	C	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:79,169:0.68:248
chr3	13672732	rs3773255	C	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,101:0.68:148
chr3	13678173	rs2290188	G	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,48:0.37:129
chr3	13679829	rs7820	C	T	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.912;QD=6.86;ReadPosRankSum=-2.013;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr3	13679850	rs71773469	TTA	T	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,16:0.32:50
chr3	13860957	rs79020924	A	G	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:89,47:0.35:136
chr3	13916407	rs3749319	G	T	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:74,42:0.36:116
chr3	14105882	rs4684179	C	A	8798.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:246,265:0.52:511
chr3	14105885	.	GCAGCAGCAGCCC	G	8755.73	.	AC=1;AF=0.500;AN=2;DP=635;set=Intersection	GT:AD:AF:DP	0/1:253,265:0.51:518
chr3	14106310	.	T	TCCAGCACCAGCAGTC	5808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DP=546;ExcessHet=3.0103;FS=0.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=2.727;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:166,263:0.61:429
chr3	14106499	rs2607779	G	A	4716.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:116,212:0.65:328
chr3	14154231	rs2731316	T	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	14157890	rs2607747	C	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,72:0.73:98
chr3	14157913	rs2731314	A	G	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:46,102:0.69:148
chr3	14158220	rs2731313	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr3	14166835	rs2733579	C	T	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr3	14175149	rs2733585	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr3	14180633	rs2731320	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr3	14187449	rs2228001	G	T	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,65:0.76:86
chr3	14187699	rs2733532	T	C	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr3	14188700	rs2733533	C	A	5781.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:100,244:0.71:344
chr3	14188762	rs2733534	G	C	10624.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:250,476:0.66:726
chr3	14189340	rs2607749	A	G	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:30,78:0.72:108
chr3	14190237	rs2279017	T	G	6452.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:147,281:0.66:428
chr3	14190268	rs2470353	G	C	6008.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:163,275:0.63:438
chr3	14197987	rs2958057	A	T	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	14199887	rs2228000	G	A	4888.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:81,214:0.73:295
chr3	14220095	rs2607775	C	G	22976.77	.	AC=1;AF=0.500;AN=2;DB;DP=1573;set=Intersection	GT:AD:AF:DP	0/1:543,1026:0.65:1569
chr3	14485484	rs36107877	C	A	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:446,222:0.33:668
chr3	14486392	rs3773189	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr3	14526667	rs113673472	C	CGT,CGTGT	1200.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	1/2:0.26,0.74:31
chr3	14537867	rs11918344	A	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,60:0.78:77
chr3	14538072	rs11333211	CA	C	8727.73	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:150,271:0.64:421
chr3	14548494	rs2276755	A	G	4168.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:104,185:0.64:289
chr3	14551444	rs9845816	A	G	4308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.74;ReadPosRankSum=-0.099;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:160,207:0.56:367
chr3	14552994	rs4685168	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr3	14554476	rs4516597	T	C	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,102:0.65:158
chr3	14555009	rs4685170	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr3	14555216	rs4685171	T	C	7775.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:159,365:0.70:524
chr3	14555367	rs4685172	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr3	14555739	rs4361268	G	A	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr3	14555758	rs138623401	C	CAGTT	3520.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:51,87:0.63:138
chr3	14555811	rs4613440	A	G	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,108:0.63:172
chr3	14558759	rs372632518	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr3	14561627	rs5846840	A	AG	2314.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	14563258	rs4234526	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	14565017	rs4685173	G	A	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	14693332	.	T	A	2635.77	.	AC=1;AF=0.500;AN=2;DP=469;set=Intersection	GT:AD:AF:DP	0/1:314,150:0.32:464
chr3	14702848	rs3832217	A	AT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.443;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr3	14702982	rs2276754	C	A	6818.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	14703297	rs9840626	C	G	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:112,171:0.60:283
chr3	14703401	rs55915506	CATAATTACA	C	381.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	14706745	rs142447115	T	TATTG	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.21;ReadPosRankSum=2.571;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr3	14706770	rs73022117	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.979;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	14708918	rs2280383	A	G	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	14712473	rs1901	G	A	4941.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:116,203:0.64:319
chr3	14724413	rs9821143	G	A	11195.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:278,505:0.64:783
chr3	14725668	rs12488352	G	A	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	14725878	rs34230332	A	G	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:62,124:0.67:186
chr3	14745857	rs17040196	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:112,51:0.31:163
chr3	14755572	rs6765537	A	G	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.142;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr3	14755617	rs6790129	C	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr3	14756730	rs9869372	A	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	14768534	rs7636830	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr3	14768554	rs17255247	G	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=0.579;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:48,26:0.35:74
chr3	14801550	rs2729697	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,26:0.33:78
chr3	14813825	rs294624	G	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr3	14905513	rs172429	T	G	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	14922376	.	A	G	414.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr3	14939198	rs2117775	G	A	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:45,62:0.58:107
chr3	14939364	rs2117774	G	A	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:27,63:0.70:90
chr3	14939479	rs2164356	G	T	6850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.311;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:167,314:0.65:481
chr3	14939679	rs2307090	G	A	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:49,99:0.67:148
chr3	14940098	rs1656415	A	G	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	14942024	rs2307088	T	C	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr3	14942675	rs293906	G	A	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	14949102	rs293910	G	T	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:270,136:0.33:406
chr3	14949268	rs9818644	C	T	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr3	14952526	rs1716969	T	G	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.082;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=1.441;SOR=1.133;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr3	14958545	rs74834668	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	14960170	rs293916	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	14965466	rs4685234	C	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	14965507	rs4685235	A	G	8043.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr3	15216541	rs17040821	G	A	3835.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:104,171:0.62:275
chr3	15216615	rs7639807	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:60,110:0.65:170
chr3	15216791	rs7651842	T	C	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:66,151:0.70:217
chr3	15219816	rs7627216	A	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr3	15276541	rs17539942	A	G	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:60,144:0.71:204
chr3	15287199	rs41276507	A	G	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:120,157:0.57:277
chr3	15292828	rs111665976	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr3	15301363	rs2291853	G	A	5417.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:113,252:0.69:365
chr3	15311325	rs1287467	A	G	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:48,110:0.70:158
chr3	15311464	rs1287468	G	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	15345924	rs9828229	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr3	15471528	rs11322247	AT	A	1495.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:9,84:0.90:93
chr3	15473515	rs2290535	G	A	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	15476011	rs1563415	C	G	21056.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr3	15537991	rs61558503	TA	CG	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.220;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=0.508;SOR=2.930;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr3	15539976	rs141810796	C	CCACA	3325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=7.093;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.837;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:323,118:0.27:441
chr3	15540148	rs58156300	T	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:157,83:0.35:240
chr3	15563178	rs73033051	C	T	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.119;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.976;QD=10.67;ReadPosRankSum=-0.892;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:38,42:0.53:80
chr3	15613279	rs56298314	T	G,TA	1174.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.224;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=7.997;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.69;MQRankSum=1.705;QD=8.90;ReadPosRankSum=-0.269;SOR=0.523;set=HC	GT:AD:AF:DP	1/2:23,29,80:0.22,0.61:132
chr3	15614587	.	T	C	2257.77	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:57,97:0.63:154
chr3	15632999	rs11296184	GT	G	314.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr3	15643043	rs2019160	A	G	24018.77	.	AC=2;AF=1.00;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	1/1:1,898:1.00:899
chr3	15643175	rs2279841	G	A	2790.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:227,144:0.39:371
chr3	15686776	rs3817641	T	C	708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.376;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:134,49:0.27:183
chr3	15717693	rs2246960	G	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr3	15718652	rs2470540	T	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	15727008	rs3817082	A	G	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr3	15727823	rs7630642	A	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-1.696;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:104,29:0.22:133
chr3	15736385	rs2455814	A	T	11451.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr3	15737610	rs2470547	T	C	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:90,179:0.67:269
chr3	15737689	rs2470548	G	A	10878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.28;ReadPosRankSum=0.894;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:138,276:0.67:414
chr3	15737698	rs2470549	T	C	10947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.10;ReadPosRankSum=0.689;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:132,272:0.67:404
chr3	15749352	rs2276751	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr3	15752830	rs2455833	T	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr3	15753641	rs2455834	A	G	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:73,124:0.63:197
chr3	15756215	rs924754	A	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr3	15776907	rs200576804	A	C	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:53,122:0.70:175
chr3	15807725	rs6789076	T	A	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:24,84:0.78:108
chr3	15838150	rs144777884	GT	G,GTTT	133.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=17;set=Intersection	GT:AF:DP	0/1:0.46:13
chr3	15900973	rs62243667	A	C	5925.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:179,269:0.60:448
chr3	15901053	rs71064238	CT	C	4837.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	15901087	.	C	CCCG	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=5.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=1.656;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr3	16217110	rs11715981	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.749;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.062;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:101,33:0.25:134
chr3	16261139	rs13063387	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr3	16264037	rs2292169	T	A	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:24,74:0.76:98
chr3	16268974	rs15767	T	A	7103.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	16268986	rs14576	C	A	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.40;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	16269066	rs14210	T	G	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:48,92:0.66:140
chr3	16269117	rs1048619	G	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,36:0.62:58
chr3	16273512	rs78766429	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	16305674	rs14080	C	G	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:467,215:0.32:682
chr3	16310857	rs842258	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr3	16312564	rs842259	C	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.018;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:117,45:0.28:162
chr3	16312716	rs11284055	GT	G	55.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	16313597	.	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.188;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.241;QD=2.91;ReadPosRankSum=-0.731;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr3	16313878	rs842260	G	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr3	16327855	rs842274	T	G	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:197,91:0.32:288
chr3	16343092	rs842283	T	G	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.192;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr3	16358584	rs690241	T	C	5180.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:152,246:0.62:398
chr3	16364919	rs690216	A	C	2094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-1.572;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:63,103:0.62:166
chr3	16368121	rs690145	T	C	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	16419309	rs34276015	C	T	8231.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:168,377:0.69:545
chr3	16450872	rs1546650	T	C	1586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-1.177;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:147,90:0.38:237
chr3	16535229	rs3815962	C	T	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,73:0.70:105
chr3	16633376	rs75019704	G	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	16635851	rs76204094	AA	GC	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	16639754	rs3773827	G	T	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.022;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:73,95:0.57:168
chr3	16640075	rs11710967	T	C	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:59,116:0.66:175
chr3	16646745	rs9847342	C	G	4172.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:63,194:0.75:257
chr3	16926445	rs138820460	A	AG	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	16926491	rs6442654	G	A	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	16926521	rs200478663	CT	C	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	16926524	.	CT	C	1267.73	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	16926539	.	CT	C	1357.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	16926544	rs368284573	T	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	16926548	.	GT	G	1267.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	16926551	.	CG	C	1447.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.92;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	16926553	.	T	C	1456.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.56;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	16926557	rs372006934	T	G	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	16926561	.	CT	C	1402.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	16926567	rs373958057	T	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.78;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	16926599	rs7626446	T	G	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	16926607	rs7626448	T	C	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.19;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	16926642	rs6442655	A	G	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.08;SOR=1.145;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	16926648	rs6442656	T	G	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=1.125;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	16926666	rs7626542	T	G	4920.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	16974610	rs9880307	C	A	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=4.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.020;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:94,57:0.38:151
chr3	17051081	rs28498854	T	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr3	17053499	rs4602367	A	G	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:135,71:0.34:206
chr3	17077268	rs17272796	C	T	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.082;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:135,73:0.35:208
chr3	17131421	rs35185988	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:123,54:0.31:177
chr3	17131501	rs11549706	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr3	17208267	rs1138454	T	C	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	17275091	.	C	CA	2475.73	.	AC=1;AF=0.500;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	0/1:62,113:0.65:175
chr3	17275173	rs2060628	G	C	7147.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	17279526	rs2060629	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	17300133	rs2596647	A	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	17413531	rs11272495	A	AAAACAAACAAACAAAC	4952.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	17470114	rs2121262	C	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	18058059	rs9310539	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=1.538;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:56,24:0.30:80
chr3	18082839	.	C	CT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.668;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr3	18308478	rs9820982	T	C	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:193,111:0.37:304
chr3	18419553	rs9310557	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr3	18419859	rs10460976	G	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,44:0.71:62
chr3	18427924	rs2229261	G	T	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.720;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chr3	19190241	rs34370450	G	C	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=26.26;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr3	19436587	rs10470642	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr3	19436828	rs75433022	T	A	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:33,101:0.75:134
chr3	19491459	rs78346521	T	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr3	19556990	rs56353870	AT	A	203.92	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr3	19575232	rs34561654	C	T	8032.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:179,357:0.67:536
chr3	19977500	.	CA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=0.971;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	20188074	rs2686314	C	T	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	21462754	rs451242	A	G	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	21462787	rs427233	G	A	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-1.659;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:135,69:0.34:204
chr3	21462880	rs4455340	A	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:112,45:0.29:157
chr3	23364883	rs9844558	G	A	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.601;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr3	23364918	rs11921580	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,43:0.34:126
chr3	23987002	.	A	AGGC	1037.73	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr3	23996371	rs4858095	T	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	24006477	rs4858097	T	A	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	24009279	rs67657770	A	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr3	24169313	rs2278802	A	T	6982.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	24184995	rs3752874	G	A	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	24270289	rs75964684	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=0.942;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr3	24562877	rs11714172	G	T	10318.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr3	25502869	rs2067964	T	G	2543.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:41,104:0.72:145
chr3	25542571	rs2116703	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr3	25611472	rs61195279	GACAC	G,GAC	589.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=28.08;SOR=2.200;set=HC	GT:AD:AF:DP	1/2:0,8,13:0.38,0.62:21
chr3	25647632	rs73051956	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	25775253	rs1488992	T	C	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	25775356	rs6550987	A	C	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	25779035	.	A	AT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.58;ReadPosRankSum=1.347;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	25805879	rs11129208	T	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	25836023	rs9831075	C	T	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	25902401	rs4681082	G	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	25904394	rs6550999	T	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	27184801	rs10865812	T	A	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr3	27203864	rs62255210	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	27204052	rs17854381	G	A	2445.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:41,109:0.73:150
chr3	27233376	rs11926580	G	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	27233498	rs11926556	C	A	4268.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:118,193:0.62:311
chr3	27243045	rs17680166	G	C	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:178,267:0.60:445
chr3	27243119	rs17680194	G	A	3604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.83;ReadPosRankSum=-1.113;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:111,170:0.60:281
chr3	27243871	rs34940413	T	C	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.607;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:29,50:0.63:79
chr3	27294507	rs2166214	A	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.622;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.30;ReadPosRankSum=1.473;SOR=1.839;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr3	27296796	rs1550769	C	G	3808.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:81,173:0.68:254
chr3	27296822	rs1550768	A	T	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:64,122:0.66:186
chr3	27297684	rs12494667	C	A	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	27297816	rs3213930	G	C	2305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.88;ReadPosRankSum=0.929;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:47,108:0.70:155
chr3	27326097	rs11129280	G	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	27326451	rs10510594	A	G	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr3	27326553	rs34894168	AC	A	164.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	27329417	rs10510593	A	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr3	27332282	rs62255594	C	T	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr3	27332736	rs139214725	C	T	3739.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:81,169:0.68:250
chr3	27332820	rs10510592	A	G	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:67,157:0.70:224
chr3	27335350	rs633157	A	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr3	27350384	rs77257134	G	T	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:29,73:0.72:102
chr3	27353716	rs552647	C	A	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:55,100:0.65:155
chr3	27363637	rs11393122	T	TA	1221.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,74:0.65:114
chr3	27387462	rs56104872	G	GGTAA	2949.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	27387463	rs2370957	C	A	2958.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	27394419	rs12494966	T	G	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr3	27424718	rs1472256	A	G	11927.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr3	27424799	rs17019721	A	G	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:146,71:0.33:217
chr3	27427521	rs9823689	A	G	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:66,174:0.72:240
chr3	27427601	rs34916422	TA	T	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr3	27427618	rs13075550	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr3	27442336	rs3736312	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.112;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chr3	27446285	rs13063291	T	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr3	27464275	rs141927720	G	T	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.435;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:220,86:0.28:306
chr3	27472936	rs3755652	C	T	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:84,41:0.33:125
chr3	27473066	rs13077400	A	G	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=0.532;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:74,37:0.33:111
chr3	27475351	rs3278	G	A	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:41,120:0.75:161
chr3	27478834	rs2029617	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr3	27478899	rs2029618	A	G	1745.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr3	27490194	rs13096477	T	C	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=2.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.885;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:288,90:0.24:378
chr3	27494589	rs2371065	A	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr3	27525708	rs6768359	C	T	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=0.364;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:26,53:0.67:79
chr3	27759338	rs9866625	C	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr3	27761753	.	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	0/1:207,97:0.32:304
chr3	27763427	rs368178421	G	GCGGCGC	1715.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr3	28358057	rs11706332	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	28373462	rs139773536	C	CA	2364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=1.842;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:58,129:0.69:187
chr3	28381887	rs3762797	A	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr3	28520417	rs1563656	T	A	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr3	28533458	rs13099814	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr3	28557206	rs10539083	CTG	C	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr3	28557236	rs7617655	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	29476428	rs3773018	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:91,32:0.26:123
chr3	29529907	rs2371695	G	A	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr3	29529913	rs5847572	TTC	T	2171.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:14,55:0.80:69
chr3	29628718	rs72046779	GTTT	G	414.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=8.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=-0.280;SOR=2.541;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr3	29628725	.	T	C	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=8.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.224;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr3	29922333	rs13324314	C	T	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:119,191:0.62:310
chr3	29925518	rs2218724	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr3	29977739	rs1449287	T	C	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	30713126	rs11466512	T	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:78,42:0.35:120
chr3	30769948	rs7617829	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr3	30842298	.	GACACACAC	G,GAC	1102.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.57;SOR=1.255;set=HC	GT:AD:AF:DP	1/2:0,14,17:0.45,0.55:31
chr3	30842346	rs10553550	AAGAG	A	1532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.903;QD=27.87;ReadPosRankSum=-0.028;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:15,40:0.73:55
chr3	30842597	rs59931065	A	AT	767.76	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,28:0.93:30
chr3	30935904	rs11921654	G	A	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:82,41:0.33:123
chr3	31621228	rs58289734	T	TAAA	1812.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	31642037	rs11713598	A	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	31658678	.	C	CTTT	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.705;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=22.94;ReadPosRankSum=0.560;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr3	31663515	rs10662891	A	AGTGTG	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	31677395	rs11129457	T	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	31789582	rs2290532	T	C	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	31789724	rs2290533	C	T	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	31839135	rs7653447	A	G	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	31839242	rs7643025	T	C	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr3	32022333	.	GCA	G	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-1.628;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr3	32181761	rs9835387	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr3	32188006	rs9839702	G	A	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	32200233	rs2305362	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	32200322	rs2305361	T	C	2876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=-0.061;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:53,124:0.70:177
chr3	32200957	rs35234737	TA	T	160.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=1.482;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr3	32207606	rs6799559	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr3	32493682	rs342745	A	G	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	32533478	rs41285087	A	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr3	32568160	.	CACACACACACG	C	905.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=3.290;QD=8.97;ReadPosRankSum=1.348;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr3	32571823	rs35467710	GA	G	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.211;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr3	32576183	rs62252795	C	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:61,27:0.31:88
chr3	32586521	rs138677120	C	T	5794.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:135,263:0.66:398
chr3	32766905	rs6550155	A	G	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr3	32774782	rs9798936	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	32801173	rs9832822	A	G	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:69,46:0.40:115
chr3	32815231	rs2396631	A	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	32915214	rs6799979	C	G	10308.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	32927509	rs6774703	G	T	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	32932485	rs201860756	G	A	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:250,113:0.31:363
chr3	32933344	rs10630076	G	GTC	441.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.930;QD=3.71;ReadPosRankSum=-2.406;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,30:0.25:119
chr3	32933360	.	C	CTT	1945.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=2.002;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=-2.203;QD=18.89;ReadPosRankSum=3.960;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:47,56:0.54:103
chr3	33055721	rs4302331	A	G	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	33065696	rs139907977	C	T	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=2.587;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:132,58:0.31:190
chr3	33093190	rs12632196	T	C	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	33099880	rs7637435	T	C	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	33138544	rs7614776	A	G	17519.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-0.991;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:2,669:1.00:671
chr3	33138549	rs7637099	G	A	29987.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,678:1.00:678
chr3	33165303	rs4320036	C	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	33165436	rs6777433	T	A	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	33171659	rs4392367	A	G	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	33174156	rs1135127	T	G	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	33174168	rs1135128	G	A	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	33175793	rs4234239	C	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	33175854	rs58617854	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	33216357	rs57072412	G	A	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:204,83:0.29:287
chr3	33255592	rs9637517	A	G	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	33359050	rs67505561	A	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr3	33414923	rs2291898	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr3	33419422	rs2291897	C	T	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr3	33426883	rs17030546	C	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	33431826	rs41285089	C	T	3371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.60;ReadPosRankSum=1.906;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:77,154:0.67:231
chr3	33434128	rs62252101	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,46:0.35:130
chr3	33434831	rs2293250	G	A	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:45,118:0.72:163
chr3	33434954	.	T	TA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.036;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr3	33444286	rs623244	T	G	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.547;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr3	33454073	rs35702863	CA	C	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.760;QD=8.20;ReadPosRankSum=1.775;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:17,47:0.73:64
chr3	33454342	rs2272152	G	A	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:37,111:0.75:148
chr3	33458266	rs3736563	T	C	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:77,136:0.64:213
chr3	33467364	rs61620772	T	TTTTAA	369.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr3	33481400	rs2272153	G	C	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:44,105:0.70:149
chr3	33540329	rs6782108	T	C	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr3	33552004	rs2049281	T	C	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:49,93:0.65:142
chr3	33592978	rs34937822	A	AT	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr3	33605300	rs7643855	G	A	5347.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:111,227:0.67:338
chr3	33612364	rs67476972	TA	T	203.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.93;MQRankSum=0.829;QD=12.73;ReadPosRankSum=0.108;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr3	33615874	rs9841413	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	33617790	rs4629282	A	G	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:65,79:0.55:144
chr3	33618551	rs11391504	G	GA	851.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.636;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.618;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:3,41:0.93:44
chr3	33626186	rs367641282	GA	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.516;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr3	33626219	rs371484858	TA	T	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.851;QD=3.33;ReadPosRankSum=0.733;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	33653622	rs6807542	T	G	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr3	33668662	rs72499357	ATTAAGT	A	1695.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr3	33725727	rs7628519	G	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr3	33725814	rs111738010	GA	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=1.018;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr3	33853496	rs114074378	C	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr3	33879770	rs3203777	G	A	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr3	33893929	rs59048229	C	CT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.849;QD=6.52;ReadPosRankSum=0.798;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	35724256	rs1513475	T	C	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=3.448;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	35725250	rs969818	C	T	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	35731725	rs1513476	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	35756778	rs2305233	A	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr3	35778773	rs2278757	A	G	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:316,139:0.31:455
chr3	35779750	rs2012153	A	G	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.049;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:142,65:0.31:207
chr3	35780735	rs35497369	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr3	35785296	rs6550367	T	C	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:107,65:0.38:172
chr3	36422064	rs59881573	G	A	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr3	36422126	rs113135397	C	T	8611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=6.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.51;ReadPosRankSum=1.145;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:105,208:0.66:313
chr3	36422135	rs112766131	G	A	9365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=-0.347;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:118,253:0.68:371
chr3	36422216	rs73052248	T	C	13858.77	.	AC=1;AF=0.500;AN=2;DB;DP=963;set=Intersection	GT:AD:AF:DP	0/1:335,627:0.65:962
chr3	36422392	.	G	GGACCCGCCGAGACTTGAACGTCCGGTAA	3461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.76;MQRankSum=2.592;QD=25.45;ReadPosRankSum=1.411;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:49,87:0.64:136
chr3	36422403	rs62245718	T	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:53,45:0.46:98
chr3	36484823	rs3749279	C	T	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,33:0.73:45
chr3	36547133	rs11711733	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr3	36570279	rs75665620	A	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr3	36587526	rs10717668	CT	C	863.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,40:0.80:50
chr3	36587544	rs7645444	G	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr3	36779707	rs3796187	G	A	20600.77	.	AC=2;AF=1.00;AN=2;DB;DP=746;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr3	36874972	rs150860159	G	A	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:63,136:0.68:199
chr3	36876154	rs3796186	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr3	36888575	rs12497299	C	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:70,22:0.24:92
chr3	36896653	rs9818599	G	C	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	36897812	rs11712950	T	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=0.557;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:169,82:0.33:251
chr3	36898991	rs61732326	T	C	3481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.586;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:366,199:0.35:565
chr3	36899593	rs7619089	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr3	36915524	rs4510338	T	C	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr3	36915814	rs4296548	T	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:36,36:0.50:72
chr3	36934343	rs5847939	CAT	C,CATAT	862.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=40;set=Intersection	GT:AF:DP	1/2:0.40,0.47:40
chr3	36934534	rs9832646	G	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=0.133;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr3	36937106	rs11129741	G	A	2246.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:130,115:0.47:245
chr3	36940741	rs9864910	G	T	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr3	37034946	rs1800734	G	A	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	37096024	rs749072	T	C	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	37100166	.	CA	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.896;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	37149447	rs17810754	C	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:62,87:0.58:149
chr3	37163039	rs336595	G	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	37367989	rs138450063	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	37512646	rs11713408	TG	CC	13158.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr3	37560577	.	CT	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.050;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr3	37567762	rs79181427	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr3	37627112	rs1155741	T	C	3582.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:71,166:0.70:237
chr3	37627149	rs1155742	G	A	3332.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:69,148:0.68:217
chr3	37627286	rs140414819	G	GCC	720.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr3	37627287	rs2364183	G	C	1072.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr3	37725264	rs73070756	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr3	37818805	rs2276003	G	C	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr3	38022163	rs35271401	C	T	4129.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:90,185:0.67:275
chr3	38080952	rs7625806	T	G	11657.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr3	38081031	rs7616776	A	T	16017.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr3	38104353	rs3752614	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	38105498	rs71094947	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.759;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.24;MQRankSum=-2.564;QD=0.37;ReadPosRankSum=1.304;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:144,37:0.20:181
chr3	38105507	rs200723161	T	TC	2747.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:56,134:0.71:190
chr3	38125705	rs7652276	G	A	10387.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr3	38125844	rs62240733	G	A	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,110:0.99:111
chr3	38125880	rs374790897	GGTA	G	5070.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=41.23;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	38134438	rs11129778	A	G	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	38151731	rs12630114	T	C	17958.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr3	38159546	rs71323653	G	A	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr3	38163785	rs151322214	G	A	14560.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:306,667:0.69:973
chr3	38170810	rs156265	C	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:280,126:0.31:406
chr3	38257567	.	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.725;SOR=1.730;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr3	38348686	rs753330	T	G	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	38350479	rs818819	T	C	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	38350519	rs818818	G	A	8527.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr3	38350543	rs818817	A	G	8497.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr3	38350630	rs704929	C	A	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	38354390	rs695939	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:9,44:0.83:53
chr3	38355176	.	T	TGTGTGCGTGTGCGCGC,TGTGTGTGTGTGTGTGCGCGCGC	2350.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=78;MQ=60.28;set=Intersection	GT:AF:DP	1/2:0.50,0.38:66
chr3	38355509	rs696253	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr3	38357220	rs368692316	C	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=4.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.673;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:164,75:0.31:239
chr3	38390020	rs2615631	C	A	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr3	38401677	rs818851	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	38401839	rs818850	T	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr3	38401918	rs818849	A	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	38402007	rs818848	T	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	38404472	rs17118	C	A	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:44,92:0.68:136
chr3	38406648	rs704942	T	C	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	38406773	rs704943	G	T	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	38406793	rs2234608	T	G	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	38408248	rs704946	G	A	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	38408361	rs843890	G	A	10244.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr3	38408459	rs2234617	A	G	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	38409600	rs704947	T	G	5114.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	38411731	rs150130857	G	GCACACACA,GCACACACACA	1113.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	1/2:0.61,0.39:31
chr3	38442490	rs2070488	G	A	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.15;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	38519424	rs2070489	A	G	6004.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	38521156	rs13097628	T	C	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr3	38524742	rs1046048	C	T	11284.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr3	38539095	rs3032515	CT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=5.747;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=3.840;QD=1.04;ReadPosRankSum=-1.770;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:56,20:0.26:76
chr3	38593128	.	TG	T	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=12.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.256;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr3	38622467	rs7430407	T	C	11601.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	38627629	rs7645173	A	G	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	38627633	rs200989283	GC	G	480.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr3	38627658	rs112524625	T	TC	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr3	38648062	rs6599222	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr3	38671768	rs41312963	G	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr3	38674475	rs41261744	C	T	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.50;ReadPosRankSum=-0.793;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:17,35:0.67:52
chr3	38674712	rs6599230	T	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	38739574	rs6599241	T	C	10698.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr3	38739845	rs6599242	A	G	8851.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	38749026	rs6599248	T	A	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	38812650	rs10212338	G	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr3	38813009	rs62244081	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr3	38911972	rs4133368	C	T	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr3	38913569	rs4077939	G	T	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.760;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	38926912	rs6599266	C	G	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:120,60:0.33:180
chr3	38938299	rs5848481	C	CT	543.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-2.311;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:11,37:0.77:48
chr3	38945560	rs4073113	A	G	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:67,135:0.67:202
chr3	38946872	rs4514993	A	T	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	38949363	rs6599267	A	C	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	38951437	rs11720056	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	38951753	rs7429404	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	38961537	rs6779297	T	C	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	38967042	rs73068563	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:117,70:0.37:187
chr3	38967103	rs4676474	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr3	39093326	rs6599003	G	A	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:160,110:0.41:270
chr3	39093436	.	C	T	5146.77	.	AC=1;AF=0.500;AN=2;DP=843;set=Intersection	GT:AD:AF:DP	0/1:556,285:0.34:841
chr3	39107993	rs10510698	T	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr3	39111140	rs2293312	C	A	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:209,115:0.35:324
chr3	39118745	rs3732375	A	G	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:168,95:0.36:263
chr3	39118844	rs192780605	G	C	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr3	39121119	rs17038400	G	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.059;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr3	39129742	rs3736573	A	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:112,66:0.37:178
chr3	39133085	rs2272217	T	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.836;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr3	39149092	rs6786764	A	G	10115.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr3	39149180	rs6786855	A	G	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:326,149:0.31:475
chr3	39149489	rs28362643	C	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:208,87:0.29:295
chr3	39152248	rs7613766	C	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.208;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr3	39152345	rs1112438	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:99,46:0.32:145
chr3	39152575	rs7614000	C	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.674;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr3	39161456	rs1274972	G	A	2647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-1.535;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:251,85:0.25:336
chr3	39161464	rs1274971	G	A	2602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.778;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:248,83:0.25:331
chr3	39166484	rs784508	C	T	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:56,71:0.56:127
chr3	39166509	rs784507	A	G	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr3	39166743	rs2669852	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	39167905	rs784506	G	A	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=7.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.59;ReadPosRankSum=-1.017;SOR=0.251;set=HC	GT:AD:AF:DP	0/1:27,68:0.72:95
chr3	39169693	rs1298712	A	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr3	39169712	rs1274969	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr3	39175576	rs784492	G	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr3	39178899	rs784495	C	T	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:89,179:0.67:268
chr3	39179909	rs784497	G	A	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:40,95:0.70:135
chr3	39180099	rs784498	T	C	5504.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:140,256:0.65:396
chr3	39180162	rs811969	A	C	6795.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:180,322:0.64:502
chr3	39180263	rs704959	G	A	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:64,123:0.66:187
chr3	39184959	rs1274958	C	T	5285.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:150,210:0.58:360
chr3	39185077	rs1274957	G	A	9382.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:235,431:0.65:666
chr3	39185248	rs784519	A	G	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:115,193:0.63:308
chr3	39185968	rs810743	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr3	39186728	rs784517	C	T	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:68,107:0.61:175
chr3	39226127	rs3732383	C	T	9811.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr3	39227664	rs61736155	G	A	7617.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	39228043	rs11711871	T	G	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr3	39229900	rs6805248	T	C	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr3	39230997	rs2271487	A	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	39308292	rs375617992	TA	T	82.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.479;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr3	39308293	rs4271863	A	T	567.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr3	39433147	rs1995236	G	A	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	39437702	rs34894781	G	GA	570.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-0.268;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,31:0.94:33
chr3	39437715	rs35086961	T	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=38.17;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	39437800	rs9877539	A	G	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	39448204	rs3772146	C	T	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	39448424	rs3772144	T	C	9160.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	39448581	rs3772143	T	G	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	39449137	rs1803893	T	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	39450065	rs3772138	C	T	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	39450276	rs34149164	C	CAT	1955.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	39450362	rs34211462	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	39450393	rs71325529	C	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	39452106	rs2077798	A	G	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	39452772	rs1392192	A	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	39453160	rs2269350	G	A	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr3	39541386	rs1708057	T	C	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr3	39541478	rs1768241	A	G	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=2.405;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:206,78:0.27:284
chr3	39541550	rs1708059	A	G	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:176,79:0.31:255
chr3	39541713	rs1768242	T	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr3	39543487	rs1612165	A	T	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr3	39554786	rs2233204	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr3	39554946	rs552724	C	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:255,106:0.29:361
chr3	40204178	rs1714414	T	C	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:41,77:0.65:118
chr3	40231883	rs1317317	C	T	8081.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr3	40251282	rs2679798	G	A	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:74,130:0.64:204
chr3	40251392	rs1799418	T	C	4543.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:100,207:0.67:307
chr3	40251628	rs1799419	G	A	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	40286017	rs4618168	T	C	1661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=0.038;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:148,93:0.39:241
chr3	40352355	rs35523102	AT	A	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.994;QD=2.19;ReadPosRankSum=1.528;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:68,33:0.33:101
chr3	40353259	rs1470937	T	G	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	40498845	rs2276868	C	T	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	40498933	rs4973904	A	G	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	40503520	.	A	ACTGCTGCTGCTG,ACTGCTGCTGCTGCTG	5958.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=252;set=Intersection	GT:AF:DP	1/2:0.14,0.85:190
chr3	40503809	rs11539046	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	40503864	.	CTTT	C	102.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.42;ReadPosRankSum=-2.200;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr3	40505886	rs11129881	C	G	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	40519429	rs4553952	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=27.15;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	40557271	rs149748710	TTGTG	T,TTG	1179.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=63;set=Intersection	GT:AF:DP	1/2:0.26,0.60:58
chr3	41274764	rs2691680	C	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	41277040	rs11564465	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	41288605	.	T	C	1274.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr3	41291081	rs2293304	G	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:128,62:0.33:190
chr3	41497115	rs3816945	C	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,32:0.30:106
chr3	41607701	rs1565957	C	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr3	41759288	rs61745795	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:85,54:0.39:139
chr3	41841716	rs4973986	A	C	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr3	41923513	rs59960840	GAGGCC	GGGCC,G	2392.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	1/1:1.00:54
chr3	41923515	rs61575884	GGCCA	G	2394.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	41923519	.	A	G	977	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=37;NR=7;PP=977;QD=22.9948002852;SC=GAATGAGGCCATCACATCACC;SbPval=0.85;Source=Platypus;TC=53;TCF=41;TCR=12;TR=44;WE=41923527;WS=41923503;set=Platypus	GT:AD:AF:DP	1/1:9,44:0.83:53
chr3	41925260	rs113374533	CAGAGAAAAAACAAGTGA	C	1881.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	41925301	rs1716685	T	C	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	41925398	rs1052501	C	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	41925423	rs1716687	T	C	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr3	41937000	rs1717003	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	41938500	rs1717005	G	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	41939993	rs1625226	T	A	1686.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.494;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=7.173;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.91;ReadPosRankSum=1.079;SOR=0.636;set=HC	GT:AD:AF:DP	1/1:2,75:0.97:77
chr3	41942199	rs1717007	T	C	7674.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	41952781	rs1716991	C	T	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	41957466	rs1716698	T	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	41960006	rs1716975	T	C	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	41961168	rs1716979	T	C	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr3	41977214	rs3934103	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	41977488	rs58069203	CCT	C	13836.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	41977548	rs139769812	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:89,35:0.28:124
chr3	41996136	rs2272007	T	C	17580.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr3	41996275	rs7651623	A	G	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	42133149	rs4974011	C	G	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr3	42202061	rs4974003	G	T	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=1.464;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:20,78:0.80:98
chr3	42218095	rs1010987	G	C	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	42218242	rs78512865	A	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.399;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:128,62:0.33:190
chr3	42226151	rs4234445	T	C	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	42230395	rs3816396	C	T	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	42230743	rs2290135	G	A	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	42234740	rs2290137	G	A	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	42236415	rs9851455	A	G	7785.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr3	42242687	rs9846541	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	42244321	rs9311309	G	A	11032.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr3	42251577	rs10634555	C	CGGA	7913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.958;QD=21.98;ReadPosRankSum=-0.848;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:55,305:0.85:360
chr3	42251607	.	A	AGGG	2015	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=6;HapScore=1;MGOF=10;MMLQ=28;MQ=60.22;NF=38;NR=105;PP=2015;QD=14.1328671329;SC=GAGGAGGAGGAGGGGTCTGGT;SbPval=0.72;Source=Platypus;TC=338;TCF=102;TCR=236;TR=143;WE=42251615;WS=42251597;set=Platypus	GT:AD:AF:DP	1/0:195,143:0.42:338
chr3	42251895	rs10717713	TA	T	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.911;QD=5.43;ReadPosRankSum=0.543;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr3	42264393	rs3733053	A	G	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	42264422	rs3733054	T	C	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	42265270	rs3836498	TCTC	T	7461.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	42265634	rs1043610	C	T	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	42305131	rs754635	C	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr3	42438754	rs13054	T	C	2878.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr3	42448296	rs33518	T	C	6993.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:152,312:0.67:464
chr3	42560882	rs28684623	T	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:88,35:0.28:123
chr3	42568929	rs2229722	T	C	3554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=687;ExcessHet=3.0103;FS=0.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=1.756;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:467,214:0.31:681
chr3	42569069	rs2276831	C	A	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr3	42572368	rs377053285	C	T	5231.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:116,232:0.67:348
chr3	42660489	rs10712209	CT	C	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.663;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:49,36:0.42:85
chr3	42728144	rs6805421	A	G	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	42733468	rs123509	T	C	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr3	42735150	rs11079	T	C	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	42735274	rs339697	A	G	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	42738297	rs2290973	G	A	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	42754912	rs3895740	A	G	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	42772180	rs10865921	C	T	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:67,126:0.65:193
chr3	42774475	rs17074778	G	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:60,117:0.66:177
chr3	42781276	rs62246603	G	T	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:64,126:0.66:190
chr3	42781316	rs11709500	G	A	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr3	42784630	rs12635736	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr3	42787469	rs2240859	A	G	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr3	42793337	rs11929390	T	C	1250.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr3	42794333	rs55904344	G	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr3	42799554	.	T	TACACAC	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=0.000;QD=15.05;ReadPosRankSum=0.249;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr3	42799765	rs17238798	G	A	1706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-1.490;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:36,79:0.69:115
chr3	42799858	rs339678	T	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	42835889	rs6764909	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr3	42907112	rs2228468	A	C	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	42917047	rs9865715	A	G	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr3	42947776	rs6789928	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	42954912	rs11129987	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	42956273	rs1427801	T	C	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	42956984	rs834579	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	43073761	rs658958	G	A	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr3	43074430	rs2948619	A	G	11870.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	43074434	rs2936817	C	T	11856.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr3	43074871	rs588335	A	G	11527.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr3	43095101	rs536119	A	G	10380.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr3	43096875	rs484260	G	A	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-1.047;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:181,85:0.32:266
chr3	43097710	rs664628	A	G	8229.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	43121559	rs604033	C	T	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	43122966	rs2936818	G	A	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	43414318	rs6441771	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	43591142	rs12638282	G	A	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	43592906	rs9829081	T	C	6825.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	43602803	rs3772165	C	T	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	43607136	rs7616708	T	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	43642126	rs6441785	C	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	43756577	rs10662733	C	CTG	3100.73	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:55,135:0.71:190
chr3	44283525	rs9850927	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	44283672	rs9833423	T	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	44283808	rs7645375	C	A	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	44284584	rs9284879	G	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	44296403	rs4682960	T	C	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	44310592	rs5004668	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	44329394	rs11294162	TG	T	2043.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	44332176	rs1488637	T	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	44362408	rs9857957	G	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	44399668	rs4682970	T	C	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	44408864	rs372993721	G	GT	423.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	44437870	rs6441838	A	C	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	44540791	rs36046723	TTC	T	13548.73	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	44599103	rs2293600	T	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	44612050	rs9873604	C	T	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr3	44635461	rs13319803	G	A	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	44762830	rs56084453	A	G	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr3	44763037	rs7640654	A	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	44775962	rs4682752	A	G	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr3	44803108	rs56236286	AAAGACAG	A	13634.73	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:2,511:1.00:513
chr3	44816952	rs10574346	CTT	C	1674.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.215;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.314;QD=25.00;ReadPosRankSum=0.821;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:7,60:0.90:67
chr3	44826315	rs56895721	G	GT	717.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=2.420;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:4,39:0.91:43
chr3	44827793	rs7642843	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	44840612	rs5848711	A	AT	2002.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	44854476	.	C	CA	76	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=13;HapScore=3;MGOF=19;MMLQ=15;MQ=59.38;NF=7;NR=1;PP=76;QD=10.125;SC=GACTCTGTCTCAAAAAAAAAA;SbPval=0.97;Source=Platypus;TC=27;TCF=17;TCR=10;TR=8;WE=44854484;WS=44854466;set=Platypus	GT:AD:AF:DP	1/0:19,8:0.30:27
chr3	44854563	rs3762636	A	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	44869026	rs4682999	A	T	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	44882784	rs6766221	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	44884647	rs3804583	C	A	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	44906746	rs10429	A	G	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	44948479	rs3749195	C	T	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.305;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.613;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:116,46:0.28:162
chr3	44948590	rs9876921	G	A	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:245,118:0.33:363
chr3	44948770	rs4622937	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr3	44948802	rs3082589	CAAAA	C	331.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=0.269;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	44952407	rs1520082	G	C	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,49:0.42:117
chr3	44952942	rs6777798	A	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr3	44959679	rs142115676	G	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr3	44986836	rs3749189	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr3	45017904	rs6441873	AG	TT	8236.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	45049186	rs11130040	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	45052775	rs6794	G	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	45068074	rs2301282	A	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	45077119	rs11545365	C	T	2499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.228;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:276,136:0.33:412
chr3	45077123	rs13963	G	A	13487.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:1,407:1.00:408
chr3	45077458	rs8318	G	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	45127515	rs9874077	T	C	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	45130609	rs35428731	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:132,80:0.38:212
chr3	45130679	rs79885994	G	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr3	45130725	rs7618923	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr3	45134822	rs3749191	T	C	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	45137087	rs2037358	T	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr3	45152343	rs78586406	G	A	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:100,54:0.35:154
chr3	45153708	rs35501071	G	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:160,59:0.27:219
chr3	45187671	rs1863837	C	T	3759.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:489,216:0.31:705
chr3	45267058	rs33750	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr3	45267310	rs41118	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	45267321	rs395917	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	45435849	rs704923	A	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr3	45500174	rs745551	C	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.36;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	45515648	rs11919039	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	45517799	rs3733117	T	C	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	45527099	rs7640603	C	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	45527218	rs7610357	T	C	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	45530401	rs3733116	G	A	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	45533224	rs2128361	G	A	14431.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr3	45542083	rs2306522	T	C	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	45559519	rs2170549	T	C	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	45565554	rs267220	A	G	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	45636335	rs267238	A	G	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	45637253	rs267237	C	T	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr3	45637439	rs267236	T	C	10584.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr3	45677635	rs11379880	C	CT	15046.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,334:1.00:334
chr3	45677637	.	GCA	TGC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=154;NR=131;PP=2937;QD=20;SC=CTCTTGTCCTGCAAGGAGCCT;SbPval=0.64;Source=Platypus;TC=301;TCF=156;TCR=145;TR=285;WE=45677647;WS=45677627;set=Platypus	GT:AD:AF:DP	1/1:16,285:0.95:301
chr3	45677638	rs5848762	CA	C	15046.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr3	45715159	rs35737275	CT	C	1945.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	45715688	rs2578679	G	A	10320.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr3	45718327	rs7640969	T	G	2769.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	45755732	rs35864358	TG	T	123.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	45776875	rs111484566	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.27;ReadPosRankSum=-1.117;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:145,32:0.18:177
chr3	45780906	rs3733107	A	G	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	45799871	rs2251347	C	T	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	45817418	rs758386	A	G	13748.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr3	45821624	rs2252547	T	C	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.369;QD=5.93;ReadPosRankSum=0.367;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:101,55:0.35:156
chr3	45964959	rs6800954	C	T	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr3	45977866	rs4535265	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:51,29:0.36:80
chr3	45977899	rs1873002	T	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	45979877	rs9875616	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	45989044	rs2234358	T	G	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr3	45996761	rs1463680	G	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	46001063	rs1532071	G	A	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-2.154;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:254,108:0.30:362
chr3	46007702	rs1994490	T	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr3	46008790	rs3796375	G	A	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:213,112:0.34:325
chr3	46009491	rs3796376	C	T	10074.77	.	AC=1;AF=0.500;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	0/1:255,436:0.63:691
chr3	46009864	rs3733100	C	G	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=2.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-1.925;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:214,89:0.29:303
chr3	46010077	rs4683158	C	T	18415.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr3	46016599	rs3821884	T	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr3	46016851	rs751552	A	T	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,65:0.33:198
chr3	46016944	rs751553	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr3	46021218	rs4682801	G	T	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	46021452	rs35537559	T	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr3	46026209	rs11338292	CA	C	3347.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	46026259	rs3733097	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:152,73:0.32:225
chr3	46245824	rs371736049	TA	T	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=6.265;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.442;QD=3.38;ReadPosRankSum=-0.411;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:50,31:0.38:81
chr3	46449978	rs11266744	A	C	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.083;SOR=0.988;set=HC	GT:AD:AF:DP	0/1:176,71:0.29:247
chr3	46450070	rs3204849	T	A	3149.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:321,172:0.35:493
chr3	46479668	rs3213479	A	G	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr3	46480801	rs9110	A	G	2682.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:314,153:0.33:467
chr3	46480958	rs2073495	C	G	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:61,118:0.66:179
chr3	46480994	rs55787894	A	G	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:28,61:0.69:89
chr3	46482861	rs34000233	G	A	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:342,142:0.29:484
chr3	46484898	rs7615975	T	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	46484964	rs1042073	G	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=0.699;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:89,48:0.35:137
chr3	46487003	rs2269435	A	G	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr3	46487750	rs6776504	A	G	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr3	46487775	rs4682816	C	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:24,62:0.72:86
chr3	46487787	rs201856214	TTTGCACCCTTAAAATTA	T	2845.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,74:0.57:129
chr3	46488936	rs762787	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:138,54:0.28:192
chr3	46489015	rs743659	A	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr3	46490250	rs1475967	A	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:161,77:0.32:238
chr3	46491267	rs17141154	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	46491290	rs2269443	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr3	46495726	rs5848797	CA	C	1965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=2.243;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.566;QD=7.00;ReadPosRankSum=-0.358;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:199,82:0.29:281
chr3	46496910	rs145526650	G	A	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:262,139:0.35:401
chr3	46501213	rs1126478	T	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.408;MLEAC=1;MLEAF=0.500;MQ=60.68;MQRankSum=-1.895;QD=4.10;ReadPosRankSum=0.167;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:103,39:0.27:142
chr3	46501268	rs1126477	C	T	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr3	46501284	rs10662431	C	CCTT	2340.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	46501842	rs4234463	G	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	46539523	rs2037391	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:72,26:0.27:98
chr3	46539864	rs11130092	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	46560721	rs35989475	TTAAG	T	413.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	46574256	rs9849400	C	T	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	46574418	rs1402152	A	G	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	46580591	rs17078944	G	T	6397.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	46593147	rs1879325	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	46620614	rs11130097	T	C	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	46654132	rs2139637	G	A	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	46658737	rs9832679	A	G	9344.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr3	46658872	rs9870935	G	T	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	46713457	rs7625303	C	G	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-2.161;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:526,203:0.28:729
chr3	46713764	rs61277784	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,24:0.35:68
chr3	46715001	rs4682825	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.323;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:99,23:0.19:122
chr3	46717931	rs6808525	T	C	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:145,57:0.28:202
chr3	46717957	rs9876451	A	G	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.320;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.045;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:110,41:0.27:151
chr3	46718298	rs6806400	A	G	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:279,131:0.32:410
chr3	46722692	rs13080080	G	T	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:340,170:0.33:510
chr3	46723777	rs56069285	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=-1.738;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr3	46726948	rs77014442	C	A	8041.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:197,374:0.65:571
chr3	46728659	rs7633016	G	A	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-3.300;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr3	46729757	rs7642448	C	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:101,42:0.29:143
chr3	46730749	rs4076927	A	G	1419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=2.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.271;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:312,104:0.25:416
chr3	46750553	rs11130106	G	A	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr3	46751073	rs10578999	TAAG	T	4142.73	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:210,115:0.35:325
chr3	46785642	rs376630125	A	G	1279.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:123,68:0.36:191
chr3	46852858	rs80252430	A	G	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:39,85:0.69:124
chr3	46933960	rs1001284	C	G	3597.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:323,190:0.37:513
chr3	46943028	rs1531137	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:71,32:0.31:103
chr3	46944274	rs1138518	T	C	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=1.525;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:300,132:0.31:432
chr3	46982365	rs6804732	T	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	47018214	rs936181	T	C	18207.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr3	47021509	rs113932344	CGCGCGCGCGG	C	323.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	47029426	rs1108301	G	A	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	47035625	rs936185	G	A	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	47035900	rs749512	C	T	7682.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	47036756	rs11720139	C	G	9225.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr3	47038135	rs11396344	C	CA	6880.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	47043210	.	G	A	9636.77	.	AC=1;AF=0.500;AN=2;DP=707;set=Intersection	GT:AD:AF:DP	0/1:260,444:0.63:704
chr3	47043386	rs73075647	C	T	11246.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr3	47043622	rs2305635	G	A	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr3	47044122	rs11928558	A	T	12024.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr3	47143087	.	A	AGT	1282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.167;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.536;QD=12.96;ReadPosRankSum=0.365;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:38,61:0.62:99
chr3	47147393	rs374269213	CA	C	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.315;QD=2.32;ReadPosRankSum=-0.803;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:75,51:0.40:126
chr3	47205502	.	CGCGGCG	C	1721.73	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	47277458	rs1874264	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	47286227	rs6772449	G	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	47287603	rs35871850	A	AT	2683.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	47305928	rs140345125	TTTTTA	T	5588.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	47316725	rs903538	G	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	47318747	rs924009	T	G	9119.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr3	47361082	rs2302278	G	T	3020.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.276;QD=21.42;ReadPosRankSum=0.642;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:8,133:0.94:141
chr3	47363971	rs17410853	G	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	47376095	rs295450	A	G	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	47449058	rs900688	T	C	18865.77	.	AC=2;AF=1.00;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	1/1:26,698:0.96:724
chr3	47451411	rs3736177	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	47452087	rs900689	G	A	26434.77	.	AC=2;AF=1.00;AN=2;DB;DP=995;set=Intersection	GT:AD:AF:DP	1/1:0,992:1.00:992
chr3	47452118	rs6780013	G	A	29435.77	.	AC=2;AF=1.00;AN=2;DB;DP=1136;set=Intersection	GT:AD:AF:DP	1/1:0,1131:1.00:1131
chr3	47453216	rs11707038	G	A	9940.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr3	47454399	rs6789730	G	A	7233.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.60;SOR=3.788;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr3	47456225	rs6442066	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	47459379	.	A	AGGGGGGTGAGAGGGGG	176.87	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=58.96;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	47459564	rs148152356	CG	C	1151.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	47462200	rs900690	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	47462587	rs900691	A	G	8833.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr3	47539751	rs2170814	T	C	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	47603926	rs11456803	A	AT	1249.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	47604299	rs4858839	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	47614413	rs2280567	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	47618953	rs3732530	C	A	10666.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr3	47645933	rs62262079	A	T	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr3	47676902	rs3216712	C	CA	370.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	47680066	rs12633923	C	T	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	47680119	rs12636863	T	C	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	47762030	rs12495204	A	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	47770380	rs6442081	G	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	47807225	.	A	AT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.795;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr3	47963443	.	CT	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=5.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.986;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr3	48019232	rs6770467	A	G	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr3	48019258	rs6770477	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr3	48206102	rs3731555	G	A	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr3	48209486	rs3731539	C	T	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	48219320	rs3731514	AAC	A	22496.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.235;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.096;QD=32.51;ReadPosRankSum=0.206;SOR=0.628;set=HC	GT:AD:AF:DP	1/1:1,691:1.00:692
chr3	48219537	rs3731513	A	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr3	48228059	.	C	CA	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.578;QD=2.14;ReadPosRankSum=2.971;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:101,40:0.28:141
chr3	48282494	rs9830016	T	C	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:44,128:0.74:172
chr3	48282651	rs35806621	TGCGC	T	10374.73	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:113,259:0.70:372
chr3	48282695	rs9847953	A	G	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:90,195:0.68:285
chr3	48299439	rs6787500	T	C	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:44,68:0.61:112
chr3	48309828	rs11718329	C	G	4856.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:112,213:0.66:325
chr3	48327729	rs9853804	T	C	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:80,104:0.57:184
chr3	48327751	rs9834095	G	A	4992.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:127,149:0.54:276
chr3	48338173	rs4479622	C	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr3	48340045	rs13085251	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr3	48342669	rs34523942	C	T	1764.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,76:0.68:111
chr3	48342882	rs35297395	C	T	2158.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:37,98:0.73:135
chr3	48348564	rs79089926	A	C	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:82,171:0.68:253
chr3	48351560	rs6793150	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr3	48360992	rs11718350	T	G	3177.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:54,137:0.72:191
chr3	48362369	rs7645425	A	T	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr3	48414197	rs9852211	A	T	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	48415007	rs4858793	C	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	48416756	rs4858817	A	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	48419897	rs6442117	C	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	48422512	rs11378351	G	GTT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=7.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=0.840;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr3	48476431	rs13062723	C	G	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	48491350	.	G	GA	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.757;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr3	48515079	rs4858795	C	T	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	48518513	.	G	GA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.557;QD=1.54;ReadPosRankSum=-0.264;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:101,35:0.26:136
chr3	48576483	rs7615170	C	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	48593341	.	T	TA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.957;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr3	48602523	rs138595277	G	GGGC	16344.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr3	48606065	rs2532848	G	T	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:49,98:0.67:147
chr3	48612471	rs76140443	G	A	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:50,100:0.67:150
chr3	48625266	rs1264194	T	C	6206.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:149,288:0.66:437
chr3	48629118	rs201877942	C	T	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=0.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=-1.240;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:252,119:0.32:371
chr3	48668170	rs114135552	C	G	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:185,87:0.32:272
chr3	48677895	rs1264195	A	T	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:28,59:0.68:87
chr3	48681765	rs147930066	CAG	C	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.861;QD=3.53;ReadPosRankSum=1.492;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr3	48709758	.	GA	G	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=3.607;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.942;QD=0.28;ReadPosRankSum=-0.466;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:117,26:0.18:143
chr3	48719638	rs7633840	T	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,71:0.69:103
chr3	48723302	rs6792510	G	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr3	48727112	rs4858798	G	A	4080.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:69,183:0.73:252
chr3	48845251	rs9311430	C	T	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:72,167:0.70:239
chr3	48897078	rs6414612	A	G	4648.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	48900100	.	G	A	658.77	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:107,42:0.28:149
chr3	48982732	rs9864243	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	48986399	rs13315711	A	T	7017.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:140,315:0.69:455
chr3	48986546	rs371516194	CATTTATTT	C	2031.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:18,52:0.74:70
chr3	49004723	rs6446196	A	G	2930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.015;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.288;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:54,137:0.72:191
chr3	49011008	.	CAA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.815;QD=2.53;ReadPosRankSum=0.694;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr3	49044767	rs6781790	C	T	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:35,60:0.63:95
chr3	49048534	rs142346765	CT	C	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.345;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr3	49048827	.	C	CT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.977;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	49053219	rs7100	A	G	5869.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:156,276:0.64:432
chr3	49054692	rs3087866	T	C	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:59,121:0.67:180
chr3	49070499	rs4974081	C	T	1800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.192;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:30,81:0.73:111
chr3	49095083	.	C	T	2159.77	.	AC=1;AF=0.500;AN=2;DP=331;set=Intersection	GT:AD:AF:DP	0/1:213,115:0.35:328
chr3	49114544	rs7626445	C	T	274.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr3	49133310	rs9840050	A	G	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-0.024;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:31,55:0.64:86
chr3	49135961	rs13064784	C	G	9424.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:236,437:0.65:673
chr3	49137904	rs4521268	G	T	8209.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:192,350:0.65:542
chr3	49139966	rs4513485	G	A	4180.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:84,173:0.67:257
chr3	49145741	rs3212	T	C	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,77:0.67:115
chr3	49146656	rs113592495	T	G	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:65,99:0.60:164
chr3	49148890	rs4292260	T	C	21920.77	.	AC=1;AF=0.500;AN=2;DB;DP=1466;set=Intersection	GT:AD:AF:DP	0/1:476,984:0.67:1460
chr3	49166069	rs9865051	C	T	5863.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:115,252:0.69:367
chr3	49200627	rs4955418	A	G	18794.77	.	AC=1;AF=0.500;AN=2;DB;DP=1328;set=Intersection	GT:AD:AF:DP	0/1:448,877:0.66:1325
chr3	49200692	rs4955419	T	A	21503.77	.	AC=1;AF=0.500;AN=2;DB;DP=1486;set=Intersection	GT:AD:AF:DP	0/1:509,973:0.66:1482
chr3	49210732	rs7617480	A	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	49211989	rs10865954	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr3	49215879	rs115414140	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr3	49249381	rs9867285	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr3	49269758	rs2099526	G	T	2271.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:55,101:0.65:156
chr3	49273996	rs12631989	C	T	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,87:0.71:122
chr3	49298139	rs7626076	G	A	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:62,186:0.75:248
chr3	49298205	rs4955417	T	C	6840.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:129,315:0.71:444
chr3	49322027	rs2304442	T	A	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=2.144;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:43,88:0.67:131
chr3	49343175	rs2230929	G	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:41,102:0.71:143
chr3	49354975	rs71077785	GT	G	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.146;QD=7.04;ReadPosRankSum=-1.096;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr3	49362369	rs56038006	C	T	4631.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:108,208:0.66:316
chr3	49373045	rs34514189	A	G	4022.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:77,175:0.69:252
chr3	49394834	rs1050450	G	A	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr3	49395673	rs139760138	GGCC	G	1290.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr3	49395757	rs1800668	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-1.277;QD=12.56;ReadPosRankSum=-0.016;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr3	49398514	rs892974	C	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.73;ReadPosRankSum=1.602;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr3	49450449	rs6779524	C	T	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:55,100:0.65:155
chr3	49455330	rs11715915	C	T	6317.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:132,280:0.68:412
chr3	49463926	rs6762593	A	G	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	49463962	rs113679342	C	CT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.216;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr3	49548008	rs2131107	C	G	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	49548294	rs2329024	T	C	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	49568095	rs2311801	G	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	49570200	rs1801143	C	T	4930.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:127,222:0.64:349
chr3	49689210	rs34762726	G	A	3116.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:63,134:0.68:197
chr3	49690199	rs4855885	G	A	10431.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr3	49690496	rs11709525	C	T	10108.77	.	AC=1;AF=0.500;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	0/1:211,456:0.68:667
chr3	49690627	rs35762866	G	A	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:296,146:0.33:442
chr3	49701298	rs2005557	G	A	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:185,103:0.36:288
chr3	49701983	rs9858542	G	A	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:57,85:0.60:142
chr3	49713753	rs6778597	T	C	4459.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr3	49714225	rs1131095	T	C	6324.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:145,287:0.66:432
chr3	49719729	rs9822268	G	A	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:39,97:0.71:136
chr3	49720393	rs2960548	C	G	3372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=798;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.188;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:584,211:0.27:795
chr3	49721532	rs3197999	G	A	5781.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:118,262:0.69:380
chr3	49721798	rs13085791	C	A	5787.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:108,263:0.71:371
chr3	49722356	rs9837520	G	A	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:82,155:0.65:237
chr3	49723750	rs71324987	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr3	49723784	rs9713651	C	A	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=4.254;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=0.135;QD=5.01;ReadPosRankSum=-0.375;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:68,28:0.29:96
chr3	49724014	rs62262684	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=56.26;MQRankSum=-4.429;QD=1.44;ReadPosRankSum=-0.380;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr3	49724048	rs10711993	TC	T	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.12;MQRankSum=-1.939;QD=2.60;ReadPosRankSum=-2.180;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr3	49724808	rs3020779	T	C	10306.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr3	49725432	rs11309936	AG	A	435.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	49725948	rs141881740	C	T	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,19:0.35:55
chr3	49726028	rs62262685	T	C	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.395;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-7.204;QD=4.77;ReadPosRankSum=3.244;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:92,42:0.31:134
chr3	49726070	rs62262686	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:84,31:0.27:115
chr3	49736565	rs6785549	G	A	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	49737954	rs35620248	G	A	9956.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:172,422:0.71:594
chr3	49739086	rs1491986	C	T	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	49739507	rs1491985	G	C	8786.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr3	49742584	rs34539806	G	A	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:95,169:0.64:264
chr3	49744392	rs3749241	A	G	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	49750188	rs3749240	T	A	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	49753003	rs34614773	T	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	49753788	rs11720705	A	G	10395.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr3	49760039	rs1466685	T	C	13466.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr3	49785133	rs7374183	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	49830032	rs61745903	C	T	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:65,202:0.76:267
chr3	49832263	rs116642728	G	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:35,88:0.72:123
chr3	49928691	rs7433231	T	C	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr3	50095103	rs139056065	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.167;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.585;QD=0.80;ReadPosRankSum=-0.438;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:71,23:0.24:94
chr3	50098993	rs10663019	C	CTT	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.161;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:49,35:0.42:84
chr3	50102446	rs115669815	T	C	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:80,118:0.60:198
chr3	50112589	.	C	CA	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-0.242;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr3	50114515	rs7061	C	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	50129374	rs5848907	T	TA	1336.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	50129399	rs2013208	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	50129994	.	CA	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.803;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr3	50130571	.	C	CA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.495;QD=2.14;ReadPosRankSum=0.739;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr3	50144951	rs1061474	T	C	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	50148305	rs2301166	C	G	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	50153356	rs1138536	T	C	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	50155887	rs112672304	TGA	T	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.374;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:141,23:0.14:164
chr3	50197097	rs1046953	C	T	15656.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr3	50220790	rs181975731	A	G	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=5.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.152;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:164,60:0.27:224
chr3	50222926	rs1046956	T	A	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	50223593	rs2073726	T	A	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	50223977	rs11717349	C	T	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	50224225	rs12632110	A	G	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,171:0.99:173
chr3	50225029	rs11711407	A	G	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,236:0.99:238
chr3	50225607	rs148259784	G	GAT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.385;QD=15.67;ReadPosRankSum=1.331;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr3	50251833	rs5848902	A	AG	9728.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	50255663	rs35926495	C	T	25328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=930;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.29;ReadPosRankSum=0.153;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:303,625:0.67:928
chr3	50255666	rs56048629	C	T	25321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DB;DP=947;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=0.395;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:309,636:0.67:945
chr3	50296330	rs71728346	G	GA	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.590;QD=1.20;ReadPosRankSum=0.699;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:140,39:0.22:179
chr3	50306545	.	C	T	2694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=4.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=0.277;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:49,122:0.71:171
chr3	50306752	rs67324803	G	GC	3111.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	50308718	rs4688739	A	G	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:66,120:0.65:186
chr3	50329826	rs1076872	A	G	8103.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:205,381:0.65:586
chr3	50332697	rs13100173	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:90,150:0.62:240
chr3	50357869	rs709210	A	C	2452.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:59,110:0.65:169
chr3	50416501	rs5030977	C	T	7102.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:181,311:0.63:492
chr3	50597092	rs1034405	G	A	11660.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr3	50609123	rs636168	T	C	8457.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr3	50609624	rs2232248	T	G	6908.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	50645635	rs621975	T	G	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr3	50645793	rs622502	C	G	12446.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr3	50678001	rs608961	C	T	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	50683809	rs876105	T	C	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	50684489	rs4468971	A	G	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	50685574	rs35676349	CA	C	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	51246360	rs4301044	A	G	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	51266880	rs113104131	TA	T	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.461;QD=1.32;ReadPosRankSum=1.141;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:99,33:0.25:132
chr3	51273711	rs1480362	A	G	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	51273773	rs1480361	T	C	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr3	51274902	rs11386090	T	TA	8336.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	51284317	rs112799991	G	A	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr3	51350112	rs113786671	T	A	3320.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:70,145:0.67:215
chr3	51393706	rs35251332	C	CAG	4155.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	51395571	rs1542574	C	T	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	51418348	rs2241784	G	A	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	51422766	rs13091931	G	T	2475.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=-0.165;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:2,99:0.98:101
chr3	51422953	.	CAAGAGG	C	53	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=23;MQ=56.83;NF=0;NR=1;PP=53;QD=108.2778367;SC=CGGCCGGGGCCAAGAGGGCGA;SbPval=1.0;Source=Platypus;TC=6;TCF=1;TCR=5;TR=1;WE=51422966;WS=51422943;set=Platypus	GT:AD:AF:DP	0/1:5,1:0.17:6
chr3	51422954	.	AA	GC	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=23.181;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.42;ReadPosRankSum=2.571;SOR=4.608;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr3	51422963	.	A	G	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=10.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.44;ReadPosRankSum=-0.385;SOR=4.608;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	51430330	rs79092917	G	A	4448.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:517,255:0.33:772
chr3	51468970	rs5848921	C	CA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.825;QD=5.99;ReadPosRankSum=-0.985;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr3	51469107	rs4611808	C	T	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	51517625	.	T	TTG	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=-0.142;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	51668102	rs76085189	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr3	51697493	rs904145	A	G	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	51812952	rs11130296	C	T	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:300,152:0.34:452
chr3	51895850	rs986539	C	T	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	51907736	rs7635409	A	G	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	51908226	rs1505403	T	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	51908430	rs6794320	T	C	12114.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr3	51911103	rs201734789	TTTTTC	T	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DB;DP=80;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.98;ReadPosRankSum=0.674;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr3	51911118	rs3036712	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=-0.000;DB;DP=47;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.05;ReadPosRankSum=-2.450;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr3	51929360	rs34574240	GA	G	2306.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	51936949	rs7635125	T	C	14905.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:2,563:1.00:565
chr3	51975577	rs929533	C	T	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr3	51978220	rs28547534	A	G	14859.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:2,565:1.00:567
chr3	51978640	rs4687792	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	51990119	rs28587738	A	C	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	51990315	rs28651222	A	G	8030.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr3	52109841	rs731684	T	C	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:96,156:0.62:252
chr3	52188308	rs6777340	T	C	3651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.319;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=2.066;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:101,167:0.62:268
chr3	52188361	rs114209632	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:67,95:0.59:162
chr3	52240856	.	A	AT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.733;QD=0.98;ReadPosRankSum=-0.526;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr3	52272945	rs11441245	C	CG	1112.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.370;MLEAC=2;MLEAF=1.000;MQ=60.65;MQRankSum=0.578;QD=23.18;ReadPosRankSum=-0.355;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:4,44:0.92:48
chr3	52415865	rs770284	A	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	52426912	.	G	A	7085.77	.	AC=1;AF=0.500;AN=2;DP=509;set=Intersection	GT:AD:AF:DP	0/1:146,338:0.70:484
chr3	52430698	rs365048	A	G	13401.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:2,520:1.00:522
chr3	52453893	rs498778	C	T	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	52469628	rs61729091	C	T	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:105,161:0.61:266
chr3	52471942	rs82825	G	A	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	52477080	rs2016575	T	C	8964.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr3	52478750	.	G	GCACC	1547	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=2;HapScore=2;MGOF=57;MMLQ=23;MQ=56.57;NF=29;NR=20;PP=1547;QD=32.1224489796;SC=CACGGCACACGCAAACTCGGC;SbPval=0.64;Source=Platypus;TC=60;TCF=34;TCR=26;TR=49;WE=52478772;WS=52478740;set=Platypus	GT:AD:AF:DP	0/1:11,49:0.82:60
chr3	52478783	.	CGCACACAAACACTGCACAT	C	2972	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=22;MQ=61.58;NF=19;NR=43;PP=2972;QD=20;SC=ACTCGGCACACGCACACAAAC;SbPval=0.51;Source=Platypus;TC=70;TCF=21;TCR=49;TR=62;WE=52478809;WS=52478773;set=Platypus	GT:AD:AF:DP	1/1:8,62:0.89:70
chr3	52488202	rs1035002	C	T	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	52489564	rs968588	A	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=4.310;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	52492085	rs4687614	G	A	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	52492601	rs62257617	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr3	52492707	rs1541495	T	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	52505758	rs3065763	G	GAT	5909.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	52506282	rs4312651	A	G	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	52506426	rs6784615	C	T	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	52506491	rs6445486	A	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	52507782	rs56114678	G	A	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=1.524;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:57,118:0.67:175
chr3	52510592	rs9856575	G	A	10465.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr3	52512318	rs2109559	A	G	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	52513940	rs4687618	T	C	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	52518786	rs4687619	T	C	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	52523405	rs887515	C	T	4341.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	52524974	rs4687621	A	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	52536308	rs758801	A	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	52537969	rs4687545	T	C	8341.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.44;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr3	52540773	rs1010553	T	C	11924.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr3	52544470	rs9835659	A	G	9130.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr3	52546487	rs7644763	C	T	8859.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr3	52548818	rs740903	C	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:184,88:0.32:272
chr3	52554304	rs7630214	G	C	12729.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:264,564:0.68:828
chr3	52559167	rs58050076	CGG	C	2572.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.409;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=39.397;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.768;QD=29.92;ReadPosRankSum=2.679;SOR=5.924;set=HC	GT:AD:AF:DP	1/1:7,79:0.92:86
chr3	52620764	rs200031540	CA	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.014;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	52676065	rs376663529	CA	C	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.988;QD=2.25;ReadPosRankSum=-0.295;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:144,59:0.29:203
chr3	52725718	.	AT	A	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.387;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.974;QD=3.90;ReadPosRankSum=-1.646;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:35,30:0.46:65
chr3	52780205	rs34986855	A	G	4615.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:98,201:0.67:299
chr3	52833078	rs199634029	G	A	6068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.123;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:155,288:0.65:443
chr3	52833881	rs35271262	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.343;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr3	52840853	rs62255418	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr3	52853340	rs7620907	G	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	52853401	rs3821831	C	T	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:66,108:0.62:174
chr3	52867288	rs4687661	A	T	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr3	52867595	rs60332615	C	A	6287.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr3	52867715	rs6787916	G	C	10254.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	52867811	rs6776876	A	T	9401.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr3	52868610	rs11922961	T	C	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	52868668	rs142854055	G	GCACACA,GCACACACA	9902.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=347;set=Intersection	GT:AF:DP	1/2:0.53,0.45:257
chr3	52868670	rs62255421	G	A	12363.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=2.113;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.158;QD=42.78;ReadPosRankSum=-0.413;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,286:0.99:289
chr3	52868716	rs77032405	GC	G	23126.73	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:5,783:0.99:788
chr3	52870729	rs11431693	C	CA	6632.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=36.64;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	52874446	rs6769789	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	52874716	rs374916394	GTT	G,GT	746.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.380;QD=15.24;ReadPosRankSum=-0.129;SOR=1.556;set=HC	GT:AD:AF:DP	1/2:3,27,19:0.55,0.39:49
chr3	52874753	rs56019197	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	52874779	rs7638431	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	52877647	rs55829187	C	CA	4581.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	52877649	rs56008508	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	52877720	rs4687668	T	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr3	52877851	.	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=2.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.824;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr3	52878721	rs7650966	G	C	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	52878746	rs10663469	C	CAG	1557.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	52878825	rs7629528	C	A	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	52881634	rs5848962	T	TG	4238.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr3	52883654	rs3216716	CT	C	2274.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	52886914	rs4687675	A	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	52960013	rs11360013	GC	G	5424.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	52960256	rs34584015	AG	A	7751.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr3	52960261	rs34585187	C	A	7794.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	52964920	rs41275523	G	A	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:61,87:0.59:148
chr3	52968726	rs2257216	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	52968801	rs2710315	T	C	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	53003021	rs2245424	G	C	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	53125922	rs11242	T	C	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	53126143	rs2581786	G	A	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	53133526	rs2581829	A	G	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	53139506	rs2564942	CA	TG	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	53164526	rs78365485	G	C	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:94,145:0.61:239
chr3	53212383	rs2306570	C	T	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr3	53212574	rs2306571	C	G	1369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.11;ReadPosRankSum=0.915;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:21,64:0.75:85
chr3	53213538	rs2035451	C	G	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr3	53213657	rs2230493	T	C	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.370;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:393,167:0.30:560
chr3	53213815	rs3830263	C	CGTGT	1513.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr3	53215875	rs11130350	A	C	5075.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:93,219:0.70:312
chr3	53216051	rs6445568	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	53220444	rs6793352	T	C	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	53222761	rs2306574	C	T	11638.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr3	53223291	rs7630600	T	G	4847.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.49;ReadPosRankSum=-0.612;SOR=1.316;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr3	53223927	rs1075865	C	G	6897.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.74;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	53224002	rs900495	T	C	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	53259850	rs3163	C	T	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:345,177:0.34:522
chr3	53259996	rs3816767	G	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr3	53260710	rs2279321	G	A	1621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=-0.528;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:23,41:0.64:64
chr3	53260716	rs2279322	C	T	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.46;ReadPosRankSum=-0.221;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:24,41:0.63:65
chr3	53260903	rs2279323	G	C	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.348;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:131,40:0.23:171
chr3	53261019	rs41275535	C	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-1.233;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	53262400	rs3736153	G	C	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.684;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=2.466;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:146,76:0.34:222
chr3	53262472	rs3736154	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr3	53263200	rs3736155	C	G	9009.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:246,436:0.64:682
chr3	53263279	rs3736156	A	G	14653.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr3	53264485	rs1131728	A	G	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:133,52:0.28:185
chr3	53267100	rs2242300	C	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:80,50:0.38:130
chr3	53267133	rs6445573	G	C	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:1,199:0.99:200
chr3	53267155	rs2242301	G	A	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:93,175:0.65:268
chr3	53267296	rs2242302	G	A	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=2.854;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:195,78:0.29:273
chr3	53267342	rs2242303	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:115,55:0.32:170
chr3	53269046	rs1051485	T	C	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:220,117:0.35:337
chr3	53269163	rs1051483	G	A	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:222,183:0.45:405
chr3	53269275	rs2242304	T	C	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:49,32:0.40:81
chr3	53324819	rs201612547	ATGGCAC	A	3504.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	53324915	rs3732834	A	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.515;QD=2.55;ReadPosRankSum=-2.674;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:87,25:0.22:112
chr3	53346525	.	CT	C	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.716;SOR=1.248;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr3	53529013	rs312479	T	A	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	53529140	rs312480	T	C	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	53766026	rs2612033	T	C	3875.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:96,181:0.65:277
chr3	53776995	rs2612026	T	C	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,62:0.66:94
chr3	53777176	rs2680648	T	C	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:57,113:0.66:170
chr3	53778875	rs2253795	G	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr3	53806803	rs2278517	G	C	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:42,123:0.75:165
chr3	53806817	rs35146621	G	A	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:65,159:0.71:224
chr3	53814197	rs1829423	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr3	53837619	rs56382996	G	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr3	53837662	rs58252138	C	T	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr3	53845295	rs10154841	C	T	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.889;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:207,109:0.34:316
chr3	53857676	rs17053532	C	T	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:48,133:0.73:181
chr3	53857803	rs12676	A	C	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.005;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:278,95:0.25:373
chr3	53880789	rs2232332	A	G	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	53882661	rs2232333	A	G	4671.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:97,213:0.69:310
chr3	53882663	rs1025690	G	A	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=4.008;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.356;QD=5.06;ReadPosRankSum=0.122;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:215,100:0.32:315
chr3	53882673	rs5849009	G	GT	8814.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;MQ=60.34;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	53883722	rs1025689	C	G	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=7.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=1.052;SOR=1.301;set=HC	GT:AD:AF:DP	0/1:70,38:0.35:108
chr3	53883910	rs4687751	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr3	53886912	rs3733075	C	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:259,139:0.35:398
chr3	53890787	rs3821867	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	53891097	rs2276840	C	G	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:20,5:0.20:25
chr3	53892553	rs13315972	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	53892641	rs9840079	T	G	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-1.608;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:101,45:0.31:146
chr3	53905308	rs1046677	T	C	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:197,121:0.38:318
chr3	53906513	rs4687757	G	A	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:162,67:0.29:229
chr3	53906663	rs2289203	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	53906951	rs12632292	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr3	53910109	.	T	TG	2666	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=8;HapScore=1;MGOF=3;MMLQ=25;MQ=60.24;NF=0;NR=49;PP=2666;QD=20;SC=CCACAATCCCTGGGGGGGGAA;SbPval=1.0;Source=Platypus;TC=172;TCF=10;TCR=162;TR=49;WE=53910129;WS=53910099;set=Platypus	GT:AD:AF:DP	0/1:123,49:0.28:172
chr3	53910118	rs744277	A	G	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=3.955;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.292;QD=4.52;ReadPosRankSum=2.385;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:149,56:0.27:205
chr3	53910121	rs5849012	AG	A	919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=3.181;QD=4.72;ReadPosRankSum=1.814;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:139,56:0.29:195
chr3	53910899	rs5849013	GA	G	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.867;QD=6.06;ReadPosRankSum=-1.191;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr3	53910919	rs11419180	G	GT	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr3	53911540	rs3733079	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr3	53912341	rs3733081	C	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:103,55:0.35:158
chr3	53915930	rs2276843	C	T	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.825;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.356;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:54,29:0.35:83
chr3	53915937	rs2276844	T	A	1058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.048;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=0.041;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:61,32:0.34:93
chr3	53916130	rs2276845	A	G	5162.77	.	AC=1;AF=0.500;AN=2;DB;DP=906;set=Intersection	GT:AD:AF:DP	0/1:610,296:0.33:906
chr3	53921022	rs1020082	T	C	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.49;ReadPosRankSum=-0.055;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:82,47:0.36:129
chr3	53921028	rs10440151	T	G	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=1.033;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:80,44:0.35:124
chr3	53922620	rs3816144	A	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:158,85:0.35:243
chr3	54156724	rs115882849	G	A	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr3	54157710	rs2290132	A	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr3	54354510	rs9879885	T	C	3401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.575;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:81,163:0.67:244
chr3	54419776	rs35870700	T	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.114;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	54420012	rs35461210	G	A	39.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr3	54596815	rs9814659	T	C	5907.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:141,258:0.65:399
chr3	54604188	rs2251788	T	C	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	54615971	rs6782115	A	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr3	54676441	rs3832224	CA	C	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	54786864	rs34310780	G	GT	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-0.045;SOR=2.124;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr3	54798258	rs3732748	G	A	5000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=0.527;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:133,234:0.64:367
chr3	54913354	rs35536476	CT	C	644.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.727;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.791;QD=8.60;ReadPosRankSum=-1.507;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:23,52:0.69:75
chr3	54919272	rs1405330	A	G	4669.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:70,202:0.74:272
chr3	54928496	rs1526595	T	C	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:89,187:0.68:276
chr3	54953022	rs3832225	CTT	C	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	54961949	rs4245920	C	T	3486.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:80,160:0.67:240
chr3	54962013	rs56327704	A	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr3	55003733	rs881820	G	T	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=0.579;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:63,141:0.69:204
chr3	55038898	rs4955827	A	G	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr3	55107944	rs17323097	A	G	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:147,65:0.31:212
chr3	55107996	rs111833275	TTTCA	T	798.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:86,28:0.25:114
chr3	55108055	rs358076	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.218;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.029;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:57,14:0.20:71
chr3	55108064	rs41277463	G	C	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.424;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr3	55108149	rs17054785	A	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:182,76:0.29:258
chr3	55108188	rs35471424	A	G	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.686;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:304,120:0.28:424
chr3	55108234	rs71948046	CACTGACTGAGATGTTCTCTT	C	3196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.000;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=2.172;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:366,103:0.22:469
chr3	55108358	rs358077	A	G	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:93,60:0.39:153
chr3	55989276	.	TTGTGTGTGTGTGTG	T,TTG	5063.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;QD=37.79;SOR=2.462;set=HC	GT:AD:AF:DP	1/2:0,41,93:0.31,0.69:134
chr3	56019805	rs6806267	T	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	56019905	rs6445762	C	A	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	56020159	rs7613818	G	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	56037025	rs5849124	C	CAT	9147.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	56037241	rs35658351	CA	C	4677.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	56037249	rs34984094	A	AG	4677.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	56052839	rs3816575	G	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:112,48:0.30:160
chr3	56591178	rs73079891	A	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr3	56591278	rs150150392	T	TGGGGTAAGCA	2208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=61.54;MQRankSum=6.971;QD=13.31;ReadPosRankSum=0.749;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:100,66:0.40:166
chr3	56591422	rs74432117	G	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,52:0.60:87
chr3	56593543	rs12486047	C	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr3	56593680	rs11130525	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.137;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr3	56593757	rs17235677	C	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr3	56597688	rs6781293	A	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=7.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-1.009;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr3	56597954	rs6769055	C	T	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.707;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:253,87:0.26:340
chr3	56599159	rs73081810	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:97,45:0.32:142
chr3	56599208	rs55831745	G	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr3	56599258	rs10687224	G	GTATT	390.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr3	56601175	rs112310084	T	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.976;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	56605404	rs34099535	T	TA	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=0.593;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr3	56627048	rs1388256	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.421;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-2.819;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr3	56627598	rs1491170	A	G	7992.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr3	56628031	rs7637449	G	A	3681.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:504,224:0.31:728
chr3	56647799	rs17216685	T	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr3	56650012	rs4681904	G	C	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:48,57:0.54:105
chr3	56650054	rs112267342	T	TCTC	2777.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,69:0.63:110
chr3	56650178	rs9833926	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr3	56651323	rs140258440	G	A	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:91,176:0.66:267
chr3	56652479	rs79095236	TT	CA	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr3	56653609	rs10534869	CGT	C	7838.73	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:104,196:0.65:300
chr3	56658871	rs2291498	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:59,107:0.64:166
chr3	56662727	rs10222629	A	T	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	56667682	rs9835332	G	C	5989.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:144,261:0.64:405
chr3	56672608	rs4681945	G	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr3	56674190	rs1489949	A	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	56695060	rs7619465	T	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	56700180	rs200301955	T	TA	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.373;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr3	56703775	rs115783694	A	G	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.632;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=0.248;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:69,96:0.58:165
chr3	56704302	rs9861577	T	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr3	56716922	rs958755	T	G	7583.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:141,337:0.71:478
chr3	56763228	rs1009119	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr3	56763316	rs1565376	G	A	2650.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr3	56763328	rs1565377	T	C	3144.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:75,136:0.64:211
chr3	56763525	rs1009118	A	G	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:150,235:0.61:385
chr3	56763619	rs6765444	A	G	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:99,146:0.60:245
chr3	56766435	rs3732511	C	G	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:80,119:0.60:199
chr3	56787451	rs3821412	C	T	3230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=-1.645;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:71,149:0.68:220
chr3	56808956	rs34038168	A	AC	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=4.618;QD=6.72;ReadPosRankSum=-0.212;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:85,43:0.34:128
chr3	56932708	rs7633179	G	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	57131529	rs6764188	A	C	11746.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	57132200	rs2291462	A	G	8328.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr3	57137090	rs2247656	A	G	6597.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr3	57138419	rs6780995	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr3	57139833	rs1545982	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	57139972	rs1545981	A	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr3	57140108	rs2035654	G	A	9600.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr3	57148968	rs11916303	C	A	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	57203398	rs4299455	C	A	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.892;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr3	57233661	rs12715498	A	T	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.606;QD=17.89;ReadPosRankSum=0.853;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr3	57233679	rs143889572	ATAAAT	A	674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.834;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=1.347;QD=23.27;ReadPosRankSum=2.092;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr3	57276258	rs11346575	GA	G	546.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr3	57294085	rs10510791	C	G	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:56,146:0.72:202
chr3	57294884	rs150865255	CAAATT	C	1675.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr3	57303548	rs146184583	C	CT	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.798;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr3	57314594	rs62251997	A	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.605;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr3	57321916	rs883244	T	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,53:0.62:85
chr3	57323170	rs528035	A	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:70,87:0.55:157
chr3	57335705	rs67229457	TACACACACAC	T,TACACAC	2564.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;QD=34.66;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,45,29:0.61,0.39:74
chr3	57335876	rs4060726	C	T	5685.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:144,264:0.65:408
chr3	57414097	rs17793014	T	A	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	57414330	rs11915740	C	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr3	57419497	rs6773904	C	T	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	57422824	rs4234394	A	G	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	57430988	rs6768943	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	57431740	rs139063171	ATAAATAAATAAT	A	6619.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.82;QD=38.26;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	57431985	rs2121743	G	A	10350.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr3	57432064	rs2121742	C	T	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	57443817	rs6768661	T	C	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	57456093	rs35152693	C	CA	473.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr3	57456371	rs9871422	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	57457123	rs6445886	C	T	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	57469053	rs9826084	A	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	57469097	rs9863860	C	T	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	57469272	rs9864150	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	57475351	rs6806444	T	G	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	57488279	rs10662782	T	TTTC	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=4.610;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=4.669;QD=3.98;ReadPosRankSum=-1.308;SOR=0.262;set=HC	GT:AD:AF:DP	0/1:77,18:0.19:95
chr3	57509103	rs6768974	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	57528503	rs9311651	A	G	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:72,115:0.61:187
chr3	57542199	rs61747701	G	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:178,89:0.33:267
chr3	57545169	.	G	GC	3116.73	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,87:0.67:129
chr3	57563120	rs80155592	GA	G	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr3	57613814	rs77006676	CTG	C	1368.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr3	57627500	rs9873675	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr3	57627580	rs9816093	A	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr3	57649214	rs372521626	A	T	308.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.05;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	57658237	rs143387330	C	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	57743337	rs13400	C	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr3	57850505	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=2.114;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr3	57898376	rs35219531	T	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:121,53:0.30:174
chr3	57908594	rs3832206	CT	C	453.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:88,39:0.31:127
chr3	58080505	rs7644723	G	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr3	58081888	rs1522384	T	C	3027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.309;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:71,149:0.68:220
chr3	58083446	rs939882	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr3	58089516	rs6445945	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr3	58089594	rs3215311	GT	G	1120.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr3	58089877	rs1522386	A	G	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr3	58109430	rs11313721	TA	T	45.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.23;ReadPosRankSum=-2.278;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr3	58351660	.	CT	C	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.377;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,19:0.42:45
chr3	58355273	rs9867320	G	C	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	58368219	rs10662181	C	CTT	248.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=10.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-0.066;SOR=0.026;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr3	58368449	rs11917591	T	C	7018.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	58376992	rs11923253	G	A	5084.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	58382846	rs3191903	C	T	7982.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr3	58383174	rs55692656	A	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	58384995	rs11712213	G	A	7821.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	58385194	rs4075152	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	58389462	rs4339119	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	58394850	rs56232415	C	T	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	58395490	rs140856155	G	GT	2991.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=23.93;SOR=2.068;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	58395497	.	T	TTG	1307	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=6;HapScore=1;MGOF=1;MMLQ=28;MQ=61.72;NF=4;NR=82;PP=1307;QD=15.4418604651;SC=GCAGTTTTTTTGGGGAAAAAA;SbPval=0.51;Source=Platypus;TC=91;TCF=4;TCR=87;TR=86;WE=58395509;WS=58395480;set=Platypus	GT:AD:AF:DP	1/1:5,86:0.95:91
chr3	58395501	.	G	A	1293	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=9;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=14;NR=59;PP=1293;QD=18.1886467472;SC=TTTTTTTGGGGAAAAAAAAAG;SbPval=0.64;Source=Platypus;TC=95;TCF=20;TCR=75;TR=73;WE=58395509;WS=58395480;set=Platypus	GT:AD:AF:DP	1/1:22,73:0.77:95
chr3	58395501	rs34734687	G	GA	1734.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.134;MLEAC=2;MLEAF=1.000;MQ=60.49;MQRankSum=0.000;QD=19.71;ReadPosRankSum=-0.790;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:6,82:0.93:88
chr3	58395863	rs56384862	A	G	9304.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	58398447	rs62258134	C	T	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	58398466	rs12635366	C	T	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	58398813	rs13071422	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	58406373	rs79725811	G	A	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:229,103:0.31:332
chr3	58409126	rs6767498	C	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	58409300	rs35853090	G	GTT	12474.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr3	58410554	rs34579268	C	T	6278.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr3	58415590	rs2070662	C	A	8606.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	58416535	rs1126551	C	T	9487.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr3	58416538	rs4264746	T	C	9543.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr3	58416770	rs138623728	T	TTTA	1734.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.82;QD=42.31;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	58417416	rs62259772	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	58494546	rs11716125	G	C	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	58516383	rs4387990	G	A	6662.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:173,296:0.63:469
chr3	58520306	rs7611026	G	C	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	58520859	rs4681862	A	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	58552997	rs1043942	C	A	1732.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:209,97:0.32:306
chr3	58555343	rs7632668	C	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr3	58555386	rs7609991	G	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.056;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:70,21:0.23:91
chr3	58575110	rs6445991	A	G	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	58621935	rs6791782	C	T	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	58625975	rs3749287	C	G	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:33,97:0.75:130
chr3	58626075	rs6762192	G	T	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr3	58631184	rs111621495	G	GAAATA	1956.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr3	58635197	rs9811989	G	A	2178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-1.818;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:58,101:0.64:159
chr3	58635294	rs72403131	GCA	G	1337.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr3	58855779	.	GTGTC	G	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.286;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=2.737;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:47,6:0.11:53
chr3	59025434	rs6446005	G	C	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.751;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr3	59908126	rs1385816	A	G	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:81,124:0.60:205
chr3	59996927	rs4679626	T	C	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=1.222;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr3	59996946	rs7612646	T	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr3	59996969	rs4679627	C	T	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,32:0.33:98
chr3	59999690	rs13067835	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.676;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr3	60898271	rs6793737	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	60898434	rs11130795	T	C	4677.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:94,217:0.70:311
chr3	61911417	rs35919403	T	TA	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.001;QD=6.63;ReadPosRankSum=-1.399;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr3	61975382	rs62620047	T	C	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=0.199;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:30,58:0.66:88
chr3	62153605	rs61078615	G	GT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.538;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr3	62229553	rs1352882	C	T	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr3	62319048	rs114729571	A	G	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=-1.162;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:15,42:0.74:57
chr3	62355666	rs3215030	G	GT	369.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr3	62431415	rs6791296	T	C	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.72;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	62450907	.	T	A	993.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:21,43:0.67:64
chr3	62451935	rs6445273	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr3	62459828	.	A	ATTTTTTTTTTTT,ATTTTTTTTTTTTTT	178	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.4150,0.5850;HP=18;HapScore=3;MGOF=43;MMLQ=23;MQ=51.94;NF=7,7;NR=4,4;PP=5,178;QD=0.727272727273;SC=AAAAATCTGTATTTTTTTTTT;SbPval=0.29;Source=Platypus;TC=36;TCF=27;TCR=9;TR=11,11;WE=62459836;WS=62459818;set=Platypus	GT:AF:DP	0/1:0.31:36
chr3	62477233	rs5007494	A	C,AACAC	629.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.71;MQRankSum=0.000;QD=28.62;ReadPosRankSum=0.279;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:2,10,10:0.45,0.45:22
chr3	62498378	rs1376917	G	A	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	62556622	rs833663	A	G	9995.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	62612013	rs2248008	C	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	62612139	rs9854038	A	T	11371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=4.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.80;ReadPosRankSum=-0.215;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:129,280:0.68:409
chr3	62612145	rs2248013	C	A	11592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=2.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.96;ReadPosRankSum=0.416;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:137,293:0.68:430
chr3	62612280	rs2367310	C	T	7186.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	62612294	rs2367311	T	C	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	62612309	rs2367312	G	C	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	62612342	rs2248023	T	C	2003.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	62612385	rs1349591	G	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	62631553	rs4588354	G	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:120,49:0.29:169
chr3	62636826	rs4688302	C	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr3	62647928	rs6770658	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr3	62648267	rs112379731	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr3	62739092	rs478123	A	G	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	63437977	rs6793874	C	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	63466382	rs6772726	G	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	63596277	rs6445369	A	C	2250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.892;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:54,103:0.66:157
chr3	63640534	rs5849568	TA	T	1844.73	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:244,139:0.36:383
chr3	63640601	rs1565983	T	C	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:99,63:0.39:162
chr3	63645231	rs4688176	G	C	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.740;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.791;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	63645252	rs4688419	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	63645575	rs34568643	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr3	63649259	rs7612738	G	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr3	63821914	rs2637982	C	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	64009508	rs40610	T	C	2430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.711;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=0.088;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:56,113:0.67:169
chr3	64133350	rs27673	A	G	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	64431140	rs114898153	C	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr3	64518994	rs1017537	T	C	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr3	64525171	rs11130968	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	64525177	rs11130969	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	64526610	rs11130970	G	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	64526651	rs3841969	CCAATGTG	C	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	64526717	rs3796384	G	C	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr3	64526942	rs3796383	A	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr3	64527321	rs1373163	T	C	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr3	64527336	rs1036919	C	T	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr3	64527378	rs1036918	G	A	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	64527465	rs1036917	C	A,T	4058.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=169;set=Intersection	GT:AF:DP	1/2:0.29,0.71:168
chr3	64554254	rs7635677	T	C	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:226,119:0.34:345
chr3	64580169	rs13320542	C	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.467;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:85,27:0.24:112
chr3	64589851	rs9985304	A	G	1659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.526;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:314,112:0.26:426
chr3	64600829	rs56869336	C	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	64617042	rs6768487	G	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr3	64617070	rs6445420	C	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr3	64617699	rs7640062	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr3	64619048	rs11717158	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr3	64633453	rs140144822	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr3	64633504	rs12715589	A	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	64640206	rs11326156	TA	T	8092.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr3	65351331	rs74697679	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:5,29:0.85:34
chr3	65353448	rs7634490	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	65361383	rs113904451	A	AAG	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=3.134;QD=7.85;ReadPosRankSum=-0.808;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr3	65416648	rs4688566	C	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	65439050	rs370264784	GA	G	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.895;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	65456198	rs57455654	G	GA	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.40;ReadPosRankSum=2.431;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr3	65464522	rs11409972	G	GT	303.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,25:0.40:63
chr3	65464625	rs7636096	G	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	65583600	.	TGG	T,TGGG	1068.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.85;MQRankSum=0.832;QD=25.45;ReadPosRankSum=-1.566;SOR=1.140;set=HC	GT:AD:AF:DP	1/2:3,30,9:0.71,0.21:42
chr3	65607592	rs112243102	T	TCA	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	65607637	rs3749455	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr3	66023592	rs28696109	A	G	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr3	66023719	.	C	T	3927.77	.	AC=1;AF=0.500;AN=2;DP=815;set=Intersection	GT:AD:AF:DP	0/1:572,242:0.30:814
chr3	66354911	rs813636	G	C	5600.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:104,241:0.70:345
chr3	66396845	rs332354	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr3	66396898	rs71616220	G	GAAGAGTAGA	773.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr3	66406415	rs783129	A	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr3	66413111	rs332387	G	T	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr3	66413130	rs332386	T	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	66419760	rs17044375	A	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	66419883	rs2293193	T	C	2715.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:65,124:0.66:189
chr3	66419956	rs13874	C	T	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:78,185:0.70:263
chr3	66431731	.	A	G	615.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	66432680	rs332371	A	G	4188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.934;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:123,203:0.62:326
chr3	66433312	rs900172	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr3	66433676	rs900171	A	G	5606.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:126,241:0.66:367
chr3	66434372	rs3830215	T	TCACACACA	1079.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr3	66434643	rs2306272	T	C	2286.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:71,112:0.61:183
chr3	66463251	rs4856924	G	A	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	66465259	rs4856928	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	66550756	rs1403625	G	C	10551.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	66550762	rs1403626	G	C	10632.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr3	67048762	rs4856833	T	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=-0.537;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr3	67058329	.	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.450;QD=1.54;ReadPosRankSum=0.463;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr3	67276059	rs9868022	G	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	67411166	rs902321	A	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=0.820;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:10,20:0.67:30
chr3	67426125	rs1065399	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	67459492	rs9824745	G	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,77:0.66:117
chr3	67548852	rs7630024	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr3	67660040	rs2290174	G	A	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.055;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:92,32:0.26:124
chr3	67660049	rs2290175	A	G	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.023;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:88,32:0.27:120
chr3	67660149	rs11286754	GA	G	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.381;QD=3.62;ReadPosRankSum=0.126;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	68587884	rs3828366	A	C	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.269;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:164,71:0.30:235
chr3	68782213	rs6549143	A	G	2669.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:46,114:0.71:160
chr3	68788363	rs1504301	G	T	6259.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:133,282:0.68:415
chr3	68788465	rs1504300	G	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr3	68934434	rs4855535	T	G	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.707;QD=14.67;ReadPosRankSum=-1.588;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:55,114:0.67:169
chr3	69028762	rs142852479	GCA	G	7092.73	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:76,176:0.70:252
chr3	69031963	rs35545453	T	C	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:235,125:0.35:360
chr3	69036524	rs200861184	G	GA	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-1.202;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr3	69036707	rs4855542	G	A	5384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.524;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.89;ReadPosRankSum=-0.516;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:1,207:1.00:208
chr3	69037633	rs9310136	G	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	69038217	rs4855543	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	69053444	rs35171227	T	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	69053447	rs9860095	A	T	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=1.634;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	69054212	rs11320020	CA	C	586.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.600;QD=11.28;ReadPosRankSum=0.248;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:9,43:0.83:52
chr3	69059023	rs9812253	A	C	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	69059083	rs56954853	AC	A	228.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	69077197	rs9855731	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	69091640	rs9985501	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	69093598	rs2271118	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	69096614	rs2292199	G	A	9882.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr3	69104695	rs6549179	T	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr3	69104752	rs6549180	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	69112658	.	CA	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.950;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:115,35:0.23:150
chr3	69137219	rs3853158	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	69137539	rs3853159	T	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	69138788	rs35599045	T	TA	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.506;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr3	69153854	rs7038	G	T	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:56,112:0.67:168
chr3	69225588	rs11128118	T	G	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr3	69225875	rs9872199	T	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	69225911	rs9868107	A	G	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	69229976	rs12054011	G	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	69230026	rs9818314	T	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	69230061	rs9831516	G	A	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	69230801	rs9836305	G	A	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	69242770	rs11310698	CA	C	2809.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:11,152:0.93:163
chr3	69244162	rs9853587	G	A	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr3	69245454	rs9310141	T	C	9813.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr3	69245949	rs9860235	G	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	69246152	rs13059488	A	G	12238.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr3	69246274	rs13059687	A	G	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	69265291	rs7643175	T	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	69265304	rs77475566	C	CA	1992.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr3	69265371	rs62254460	G	C	8890.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr3	69267578	rs4855301	A	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	69271206	rs6549189	T	C	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	69273656	rs9848940	G	T	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr3	69299185	rs73099842	C	A	1986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=1.198;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:206,114:0.36:320
chr3	69336695	rs4855380	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr3	69336740	rs4855381	A	G	1288.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr3	69336795	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.278;QD=0.34;ReadPosRankSum=-0.600;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:179,32:0.15:211
chr3	69351460	rs34523072	AAG	A	5774.73	.	AC=1;AF=0.500;AN=2;DB;DP=245;MQ=60.57;set=Intersection	GT:AD:AF:DP	0/1:75,167:0.69:242
chr3	69359730	rs142506790	CACAGAGAGAGAGAG	C	846.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr3	69362706	rs1483895	C	T	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	71007347	.	C	CA	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.240;QD=0.41;ReadPosRankSum=0.834;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:375,76:0.17:451
chr3	71007361	rs1053797	G	T	17343.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=29.15;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,595:1.00:595
chr3	71008341	rs112773801	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=0.672;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr3	71015021	rs7638391	G	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	71019750	rs9874207	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	71025935	rs13068094	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr3	71064872	rs151011253	T	TA	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,26:0.26:101
chr3	71247576	rs9855825	A	T	820.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.45;ReadPosRankSum=-1.046;SOR=0.578;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr3	71748643	rs1447905	T	C	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:64,103:0.62:167
chr3	71748911	rs62246325	A	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,45:0.58:77
chr3	71759717	rs12487242	C	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr3	71774230	rs113406997	A	G	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr3	72495593	rs11460842	T	TA	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.197;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.955;QD=8.94;ReadPosRankSum=-1.166;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:20,52:0.72:72
chr3	72495777	rs13066407	C	G	7633.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=3.287;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.14;ReadPosRankSum=-0.647;SOR=0.436;set=HC	GT:AD:AF:DP	1/1:1,291:1.00:292
chr3	72495945	rs13088771	A	G	11670.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr3	72891736	rs2036446	A	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.772;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr3	72895449	.	CT	C	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.089;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr3	73004157	rs1532190	T	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr3	73016974	rs3821379	A	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr3	73024350	rs1052278	C	A	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:201,88:0.30:289
chr3	73046508	rs9834246	G	C	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.560;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:114,41:0.26:155
chr3	73046544	rs9310254	T	C	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=0.835;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:122,36:0.23:158
chr3	73046561	rs9873229	C	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=0.189;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:123,36:0.23:159
chr3	73096591	rs71277513	A	ATAAT	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	73110076	rs726029	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.080;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:71,31:0.30:102
chr3	73111368	rs2231924	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:100,42:0.30:142
chr3	73111809	rs2231926	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:200,85:0.30:285
chr3	73111973	rs2231928	A	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.133;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:231,89:0.28:320
chr3	73111998	rs1060584	C	T	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=1.868;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:256,99:0.28:355
chr3	73112919	rs3841614	T	TA	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.988;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr3	73112974	rs11708712	A	T	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.348;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr3	73434086	rs6787588	A	G	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	73437112	rs6549532	A	G	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=25.49;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	73437185	rs61732653	A	G	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=1.854;QD=14.65;ReadPosRankSum=0.692;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:34,74:0.69:108
chr3	73437225	rs3830251	T	TA	520.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.188;MLEAC=2;MLEAF=1.000;MQ=61.96;MQRankSum=0.713;QD=20.83;ReadPosRankSum=0.694;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr3	73440108	rs35427155	G	GA,GAA	1734.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.775;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.42;ReadPosRankSum=-0.929;SOR=0.254;set=HC	GT:AD:AF:DP	1/2:2,64,15:0.79,0.19:81
chr3	73453201	rs2291464	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	73453325	rs2291463	C	T	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	73651383	rs6809923	A	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:58,61:0.51:119
chr3	73651469	rs6797804	C	T	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:135,181:0.57:316
chr3	73651621	rs11343439	TA	T	1170.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:9,70:0.89:79
chr3	73673578	rs6763344	G	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	74315580	rs615824	C	G	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.509;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:200,76:0.28:276
chr3	74344356	rs10490832	T	G	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:161,118:0.42:279
chr3	74350618	rs140661839	C	G	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.326;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:220,92:0.29:312
chr3	74350997	rs475988	T	C	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.094;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-0.332;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:105,36:0.26:141
chr3	74352061	rs672784	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr3	74413676	rs6549590	T	C	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:345,147:0.30:492
chr3	74474166	rs7619184	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	75386297	rs6769147	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr3	75386380	rs4677501	T	G	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	75680109	rs199802601	G	T	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=45.12;MQRankSum=-0.392;QD=9.41;ReadPosRankSum=-0.870;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:60,53:0.47:113
chr3	75680133	rs200731407	G	T	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=5.789;MLEAC=1;MLEAF=0.500;MQ=43.62;MQRankSum=-3.021;QD=26.66;ReadPosRankSum=0.670;SOR=2.358;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr3	75680143	rs201369225	G	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.026;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.84;MQRankSum=-1.460;QD=7.40;ReadPosRankSum=0.586;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr3	75680159	rs200479732	A	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.368;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.96;MQRankSum=-1.417;QD=10.77;ReadPosRankSum=-0.574;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr3	75786440	rs145944373	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.77;QD=26.37;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	75786753	rs3009020	C	T	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	75786832	rs11122676	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	75790972	rs118003039	C	T	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.46;QD=21.36;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	75986663	rs12171318	C	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr3	75986686	rs62269817	A	G	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=7.596;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-8.557;QD=15.26;ReadPosRankSum=-1.518;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr3	75986717	rs78834776	G	A	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.234;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=5.894;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-8.640;QD=6.87;ReadPosRankSum=0.409;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:97,64:0.40:161
chr3	75986719	rs62269818	G	C	2575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=9.477;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-10.102;QD=15.71;ReadPosRankSum=1.553;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:92,72:0.44:164
chr3	75986794	rs80235520	G	A	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:154,71:0.32:225
chr3	75986813	rs77101234	T	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:150,46:0.23:196
chr3	75986833	rs73123284	C	T	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=5.559;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-12.627;QD=4.52;ReadPosRankSum=-5.270;SOR=1.279;set=HC	GT:AD:AF:DP	0/1:137,25:0.15:162
chr3	75986874	rs7610755	G	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr3	76484180	.	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=4.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.617;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:97,35:0.27:132
chr3	76484183	rs3849491	T	C	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	77147039	rs9873691	C	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	77147112	rs9874095	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr3	77530247	rs113680429	C	T	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=1.130;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	77607070	rs5850333	A	AC	5048.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	77645946	rs35328861	CT	C	660.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=1.474;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:5,45:0.90:50
chr3	77645984	rs775718	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr3	77651695	rs3732916	A	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chr3	77651985	rs9852724	C	T	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:42,114:0.73:156
chr3	77671695	rs113615800	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr3	77671721	rs2272163	C	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	77681865	rs1451617	T	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	77684222	rs3821735	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr3	78663956	rs1027832	G	A	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.218;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:99,37:0.27:136
chr3	78664093	rs1027833	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	78666765	rs9839790	T	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:58,37:0.39:95
chr3	78676422	rs7614084	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr3	78676467	rs7636043	A	G	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	78680578	rs6548592	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	78695185	rs73108203	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:61,39:0.39:100
chr3	78700779	rs3925684	C	A	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	78700838	rs58872086	G	A	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:61,119:0.66:180
chr3	78708810	.	AAT	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.239;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:68,8:0.11:76
chr3	78709068	rs76880412	CTTTT	C	706.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.12;ReadPosRankSum=0.997;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr3	78711350	rs9864412	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=-0.900;QD=5.15;ReadPosRankSum=-0.361;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:65,27:0.29:92
chr3	78711394	rs11359455	GA	G	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=-0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-0.000;QD=6.84;ReadPosRankSum=0.999;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	78717508	rs2255164	G	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr3	78737962	rs967454	G	A	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:158,77:0.33:235
chr3	78796078	rs2304503	C	A	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.185;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:26,50:0.66:76
chr3	80491208	rs146446299	A	T	236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-0.884;QD=4.38;ReadPosRankSum=-1.408;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr3	81584268	rs60133692	CT	C	552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.840;QD=5.64;ReadPosRankSum=-1.449;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:45,53:0.54:98
chr3	81586255	.	C	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.558;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.797;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:75,20:0.21:95
chr3	81643167	rs2172397	T	C	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	81698130	rs2229519	T	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.918;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr3	81792592	rs3772889	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr3	81810702	rs11391701	A	AG	2339.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	81810725	rs2290081	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr3	85434950	rs3086134	C	CTTT	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=-2.393;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr3	85984830	rs36080783	T	C	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr3	87100309	rs2575753	T	C	14234.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr3	87100434	rs7619398	G	A	5266.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	87100893	rs2256481	G	A	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	87295049	rs11540913	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	88041005	rs1931	A	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr3	88188420	rs9813894	G	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	88189341	rs7653652	T	C	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	88190768	rs7432826	C	A	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	88190809	rs7432838	C	T	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	88199179	rs6551277	T	C	9179.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr3	88199185	rs11374933	T	TC	10837.73	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr3	88199298	rs6551278	T	C	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr3	89456555	rs3792572	T	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-0.980;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:158,56:0.26:214
chr3	89480265	rs12639506	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,57:0.35:165
chr3	89498619	rs1028011	A	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	89521509	rs73139110	C	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr3	89521602	rs112297761	T	TC	1696.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.443;QD=9.12;ReadPosRankSum=-0.386;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:125,61:0.33:186
chr3	89521693	rs35124509	T	C	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.448;QD=5.09;ReadPosRankSum=-0.704;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:151,73:0.33:224
chr3	89521725	rs1054750	T	C	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.454;QD=5.28;ReadPosRankSum=1.972;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:110,53:0.33:163
chr3	89521820	.	TTG	T	403.73	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	89521824	rs371736339	CT	C	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.183;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	89521825	.	TTGACATGAAA	T	2187	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=2187;QD=561.818846541;SC=CTTTCTTGGCTTGACATGAAA;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=4;WE=89521849;WS=89521810;set=Platypus	GT:AD:AF:DP	1/0:13,4:0.24:17
chr3	89521828	rs376317195	AC	A	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=0.049;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr3	89521831	rs369749467	TGAAAG	T	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-0.301;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	89521838	rs200459033	TTTG	T	391.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.81;ReadPosRankSum=-1.380;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr3	89528461	rs12631313	A	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.487;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr3	89528477	rs12636710	G	A	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr3	90264768	rs6803112	A	G	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	90276701	rs150608014	GCA	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-4.127;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chr3	93605126	rs8178649	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	93780109	rs61739170	G	C	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	93813171	rs10934676	C	G	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr3	93845062	rs61730354	A	G	4804.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:77,205:0.73:282
chr3	94225786	rs1906643	G	T	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	97194422	rs7624823	T	G	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	97364939	rs12488895	A	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	97365038	rs301948	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	97365074	rs301949	A	G	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	97367230	rs3214668	C	CA	7109.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	97466432	rs79617067	T	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,38:0.36:105
chr3	97467361	rs138837886	ATCTC	A	1475.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:108,51:0.32:159
chr3	97499654	rs10935082	T	A	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	97591153	rs17301717	C	T	2823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=0.226;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:315,160:0.34:475
chr3	97593485	rs2279897	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:165,81:0.33:246
chr3	97607290	rs13065340	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:135,61:0.31:196
chr3	97660084	rs11544446	C	T	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.896;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:129,36:0.22:165
chr3	97660198	rs832089	A	G	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:47,19:0.29:66
chr3	97666183	rs2307808	TCTC	T	5137.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:78,131:0.63:209
chr3	97673268	rs832079	A	C	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr3	97680422	rs41272339	C	T	4751.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:112,214:0.66:326
chr3	97686575	rs699304	T	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr3	97805954	rs13082722	T	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	97806616	rs4518168	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:107,65:0.38:172
chr3	97806999	rs6439602	T	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	97851998	rs9845327	A	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	97852083	rs9826076	C	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	97868419	rs4241468	G	A	9826.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr3	97868795	rs4857076	A	G	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	97868970	rs12639519	T	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr3	97869081	rs146590101	A	G	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:41,77:0.65:118
chr3	97887865	rs4133320	G	A	15854.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=26.47;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,599:1.00:599
chr3	97887985	rs4133321	T	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	97888042	rs4133322	A	T	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	97888197	rs7623031	C	T	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	97888337	rs13082608	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	97983040	rs4241470	C	T	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	97983117	rs4241471	A	G	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:1,261:1.00:262
chr3	97983257	rs2132894	C	G	19830.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=43.20;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr3	97983265	rs4241472	C	A	19534.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=44.91;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,435:1.00:435
chr3	97983374	rs4857358	A	G	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr3	97983391	rs2173236	C	G	11665.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr3	97983561	rs9289564	G	C	16634.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr3	97983711	rs9853887	T	C	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	97983740	rs36116717	C	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	97983942	rs9853906	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	98002587	rs16839611	A	G	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	98225441	rs1132750	A	C	365.81	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr3	98241847	rs6807441	G	C	5361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=1.156;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:126,249:0.66:375
chr3	98281349	rs9850648	G	T	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:123,58:0.32:181
chr3	98299707	rs374091299	TA	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.638;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.360;QD=3.86;ReadPosRankSum=-1.078;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:22,17:0.44:39
chr3	98304467	rs1729995	T	C	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr3	98475083	rs893832	A	G	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=5.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.91;ReadPosRankSum=0.676;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr3	98487206	rs3213958	A	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.238;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=5.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.503;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:162,53:0.25:215
chr3	98490141	rs844160	A	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	98501080	rs3772100	C	T	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.352;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:139,53:0.28:192
chr3	98503683	rs704585	C	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	98503792	rs112115496	A	G	3195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=1.121;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:89,150:0.63:239
chr3	98507134	rs73136057	C	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:99,45:0.31:144
chr3	98512417	rs9862660	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	98512540	rs28489284	G	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,62:0.61:102
chr3	98518160	rs62821060	T	TA,TAA	2083.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.30;MQRankSum=0.520;QD=19.66;ReadPosRankSum=0.658;SOR=1.041;set=HC	GT:AD:AF:DP	1/2:8,72,26:0.68,0.25:106
chr3	98519481	rs1822017	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:192,90:0.32:282
chr3	98520339	rs72934641	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr3	98526864	rs28417568	T	C	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr3	98541012	rs866873	G	A	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	98541422	rs828617	G	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr3	98542194	rs6440159	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	98542485	rs142035943	G	GAAGAA	1945.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	98544123	.	CAA	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.154;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	98544304	rs73138004	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr3	98544323	rs115286465	T	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr3	98544353	rs828622	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	98600385	rs9838238	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr3	98619997	rs17852693	G	C	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-0.836;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:105,53:0.34:158
chr3	99643176	rs793440	C	T	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr3	99860401	rs7629487	G	A	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr3	99886662	rs11537816	G	A	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=1.393;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:137,62:0.31:199
chr3	100015146	rs3772698	G	T	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=2.173;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:43,77:0.64:120
chr3	100034849	rs4928169	A	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr3	100053684	rs3830303	C	CG	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr3	100064829	rs2289505	C	G	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr3	100064902	rs2289506	C	T	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:46,101:0.69:147
chr3	100067468	rs277649	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr3	100086861	rs277640	T	C	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr3	100092526	rs11384494	A	AG	3060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.672;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=8.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=2.290;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:42,77:0.65:119
chr3	100092527	.	G	GGTGC	2954	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=39;PP=2954;QD=20;SC=AATTCAACTAGTCCAGTTAAG;SbPval=0.48;Source=Platypus;TC=76;TCF=3;TCR=73;TR=41;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:35,41:0.54:76
chr3	100092528	.	T	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=13;NR=39;PP=2962;QD=20;SC=ATTCAACTAGTCCAGTTAAGT;SbPval=0.81;Source=Platypus;TC=95;TCF=30;TCR=65;TR=52;WE=100092536;WS=100092517;set=Platypus	GT:AD:AF:DP	1/0:43,52:0.55:95
chr3	100092528	rs3832198	T	TGCA	3060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=8.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=2.183;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:42,77:0.65:119
chr3	100119611	rs138465118	C	A	6330.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:140,282:0.67:422
chr3	100170553	rs7641299	G	A	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:86,116:0.57:202
chr3	100295733	rs7427360	A	G	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:184,116:0.39:300
chr3	100352043	rs610854	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	100354524	rs1144122	A	G	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:170,82:0.33:252
chr3	100354683	rs1520652	G	A	1930.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr3	100354698	rs1718281	T	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.01;SOR=2.617;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	100368425	rs7622958	A	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr3	100368692	rs1144118	A	G	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	100374740	rs9866111	T	C	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:61,101:0.62:162
chr3	100432752	rs9824942	A	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr3	100467018	rs11353	T	C	3938.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:118,173:0.59:291
chr3	100472848	rs905604	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr3	100473505	rs10936352	C	T	3658.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:148,177:0.54:325
chr3	100493607	rs3736534	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr3	100511379	rs989794	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	100511428	rs989793	G	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr3	100511446	rs989795	T	A	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr3	100560745	rs66923918	GA	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.12;ReadPosRankSum=0.187;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr3	100565031	rs6774830	G	C	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr3	100581261	.	A	AT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.189;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.651;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr3	100585694	rs3732899	C	G	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:134,71:0.35:205
chr3	100594326	rs3839090	CGGCATA	C	4985.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:83,127:0.60:210
chr3	100605206	rs1987384	A	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	100617680	rs2245370	C	T	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:74,100:0.57:174
chr3	100621426	rs2576365	C	A	4485.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr3	100945983	rs486352	A	T	243.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	100946742	rs521661	T	G	4881.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	100949842	rs348867	G	A	4098.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	100963154	rs571391	G	A	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr3	100976613	rs201089959	C	T	4484.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:162,207:0.56:369
chr3	100976755	rs7613046	G	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	101038339	rs546090	G	A	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	101039107	rs573908	A	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	101046671	rs9849770	C	A	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	101051794	rs2068494	C	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	101060716	rs6441598	T	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	101066964	rs7636229	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	101066992	rs2553421	A	T	287.78	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr3	101080694	rs7616677	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	101085413	rs939443	G	A	10754.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr3	101136385	rs4482646	C	A	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	101177644	rs12496159	A	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	101212596	rs9876655	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	101212889	rs3846088	C	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	101219818	rs7619540	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	101219889	rs7621830	G	C	1826.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.507;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-0.508;SOR=0.626;set=HC	GT:AD:AF:DP	1/1:1,73:0.99:74
chr3	101231871	rs9681493	C	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr3	101231894	rs9682312	TA	GT	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	101231921	rs9682313	T	C	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	101232057	rs9682739	G	A	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	101232093	rs55749605	C	A	41.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	101299031	rs144008875	CAAT	C	510.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr3	101304414	rs3804776	G	T	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-1.025;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr3	101308846	rs6441614	G	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	101371325	.	ATAAAG	A	2530.73	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:124,71:0.36:195
chr3	101378927	rs2288273	G	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,36:0.41:87
chr3	101389864	rs9837549	T	C	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	101404813	rs2303473	A	G	2050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.920;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:53,98:0.65:151
chr3	101443461	rs994573	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	101484335	rs2625282	G	A	7567.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr3	101504624	rs2625289	A	C	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	101571550	rs587555	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	101572822	rs2925334	C	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	101573345	rs11309019	AT	A	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.523;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:128,39:0.23:167
chr3	101574503	rs677011	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	101575882	rs595788	T	C	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.782;QD=11.81;ReadPosRankSum=-0.208;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:33,112:0.77:145
chr3	101576029	rs3217713	T	TACTTTTAGAAAGCTTTAATAACC	16614.73	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	101576175	rs14134	T	C	11209.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr3	102172106	rs11708291	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	102176799	rs75957873	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr3	102189169	rs17822656	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:38,54:0.59:92
chr3	105252377	rs2171146	G	C	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr3	105253475	rs6437601	A	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:152,77:0.34:229
chr3	105258861	rs1044240	A	G	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.008;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:282,111:0.28:393
chr3	105260596	rs599278	T	C	7853.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	105389153	rs11713094	A	G	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:55,119:0.68:174
chr3	105412286	rs10635036	C	CTT	1708.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	105438806	rs7624400	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	105438957	rs2305036	T	G	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=0.096;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:69,111:0.62:180
chr3	105439026	rs2305035	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr3	105452751	rs1992520	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	105453034	rs6768096	A	G	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	105455955	rs2289746	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr3	105468330	rs1443098	C	T	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	105495179	rs9657905	A	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.285;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.556;QD=3.68;ReadPosRankSum=0.171;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr3	105495432	rs9809911	G	T	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	105586538	rs2221379	G	A	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	105588069	rs11711088	G	A	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	107097346	rs3811061	C	A	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:238,109:0.31:347
chr3	107447857	rs3761963	T	A	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:71,120:0.63:191
chr3	107451907	rs4855764	C	T	9210.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr3	107463456	rs3838316	TG	T	2501.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:64,77:0.55:141
chr3	107491758	rs34531902	TAGA	T	1342.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr3	107519843	rs1532325	T	C	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	107524112	rs3840144	G	GT	936.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr3	107646728	rs4855779	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	107646807	rs9837335	G	T	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	107646895	rs9861097	T	C	11080.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr3	107647001	rs35976982	CA	C	7577.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;MQRankSum=0.485;QD=20.59;ReadPosRankSum=-0.669;SOR=0.535;set=HC	GT:AD:AF:DP	1/1:5,363:0.99:368
chr3	107769230	rs696364	C	T	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-1.428;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:55,54:0.50:109
chr3	107776511	rs709436	C	T	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	107777051	rs3762679	C	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr3	107789790	rs56063635	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=-0.703;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	107809798	rs445541	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	107882357	rs28483736	C	T	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	107882643	rs327168	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	107884211	rs327167	T	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	107884269	rs62264150	A	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:37,84:0.69:121
chr3	107885875	rs2305551	A	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr3	107910327	rs60290956	C	CTT	1808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=9.23;ReadPosRankSum=0.130;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:86,110:0.56:196
chr3	107932621	rs62267895	G	A	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr3	107937231	rs1289761	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	107937286	rs1289760	A	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr3	107937360	rs56273515	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:73,96:0.57:169
chr3	107937408	rs1135897	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:57,77:0.57:134
chr3	107937571	rs1289759	G	A	82.81	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr3	107937602	rs1289758	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	107938240	rs1289754	G	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:72,59:0.45:131
chr3	108070556	rs9846218	T	C	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr3	108072243	rs6766283	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	108072298	rs6779254	T	C	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	108072704	rs6779650	T	C	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	108073903	rs17182659	C	T	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:71,107:0.60:178
chr3	108081247	rs16854512	G	A	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:176,113:0.39:289
chr3	108096098	rs1463426	C	G	7893.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr3	108096227	rs1463425	G	C	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr3	108102586	rs7426463	T	A	503.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=-0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.45;ReadPosRankSum=-0.801;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr3	108107704	rs1463431	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr3	108107951	rs1456714	C	T	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:234,124:0.35:358
chr3	108135606	rs56933265	TAA	T	4273.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	108135609	rs116262927	A	T	4282.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=43.70;SOR=1.784;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	108135680	rs9873504	C	T	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.365;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:186,106:0.36:292
chr3	108135799	rs11927603	C	G	4360.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	108140148	rs4593038	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	108147295	rs1350235	C	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr3	108156633	rs113832514	A	AAAAG	921.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr3	108158837	rs12629032	T	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr3	108159977	rs12638212	G	A	3841.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:332,204:0.38:536
chr3	108179063	rs3957558	T	C	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	108179219	rs11303627	CA	C	1383.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:12,92:0.88:104
chr3	108182168	rs373219290	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.995;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=7.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.069;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr3	108183433	rs12488437	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr3	108189750	rs12495639	C	T	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	108211869	rs140450152	A	AAAGG,AAAGGAAGG	4462.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;QD=45.08;SOR=3.142;set=HC	GT:AD:AF:DP	1/2:0,66,33:0.67,0.33:99
chr3	108214537	rs2603140	T	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	108229171	rs2249886	T	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	108229437	rs150536264	G	GA	1280.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.488;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-1.588;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:8,70:0.90:78
chr3	108272414	rs76336584	T	TA	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr3	108295067	rs16854713	G	A	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	108324365	rs41267019	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	108327050	rs10684119	T	TAAC	1279.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=42.66;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	108355423	rs10711079	AT	A	1014.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	108355575	rs10711080	CT	C	1363.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:9,84:0.90:93
chr3	108356501	rs143129590	T	TTTAAGGTAGTA	704.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	108366978	rs2399235	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=1.281;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:55,27:0.33:82
chr3	108393134	rs41267025	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr3	108394771	rs12486790	G	A	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	108403086	rs9856097	T	C	7627.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	108474507	rs1374821	T	C	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	108541931	rs5851618	CAT	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	108557820	rs7651205	T	C	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	108565815	rs2593831	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	108567923	rs2715716	G	A	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	108639270	rs6791441	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:74,38:0.34:112
chr3	108639384	rs6804162	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.213;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:68,25:0.27:93
chr3	108639423	rs2715687	C	T	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr3	108698627	rs2953338	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	108703422	rs1868195	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	108703587	rs2290057	C	T	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:75,112:0.60:187
chr3	108705715	rs11433147	A	AT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.704;QD=2.24;ReadPosRankSum=2.191;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:27,10:0.27:37
chr3	108725694	rs2044586	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	108754238	rs4855576	A	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=25.95;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	108754320	rs11438791	T	TAA	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=27.17;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr3	108754346	rs35736028	CA	C	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	108776343	rs1031252	C	T	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	108782160	rs895738	T	C	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	108788461	rs2305238	T	C	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	108829765	rs6437822	C	T	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	108855774	rs1356071	A	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	108855801	rs1356072	T	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	108867128	rs4855697	A	G	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr3	109019435	rs9865540	G	A	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr3	109027157	rs7611135	C	T	4791.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:120,221:0.65:341
chr3	109027820	rs7611871	G	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	109049384	rs13059848	T	C	3283.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	109050980	rs1163438	T	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	109178707	rs769534	C	G	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=0.693;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:52,97:0.65:149
chr3	109178758	rs769533	C	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	110611002	rs4634159	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr3	110611137	rs1381838	G	A	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	110611948	rs73852309	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,36:0.59:61
chr3	110791113	rs4682228	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	110792906	rs2399372	G	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	110793050	rs2399373	G	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.839;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:109,50:0.31:159
chr3	110796191	.	TAA	T	336.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.81;ReadPosRankSum=-0.108;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr3	110830746	rs113902748	ATGTGTGTG	A,ATGTG	907.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=53.40;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,7,10:0.41,0.59:17
chr3	110866195	.	CT	C	397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DP=380;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=4.184;QD=1.10;ReadPosRankSum=-0.817;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:277,85:0.23:362
chr3	110866437	rs62273799	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	110911392	rs73854929	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:18,45:0.71:63
chr3	111260975	rs2276873	C	T	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	111261242	rs3832264	G	GCTGCTGAAATTGATCACCA	4326.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	111356083	rs1533270	G	C	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr3	111426690	rs76262777	T	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr3	111451603	rs3821919	G	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	111564839	rs937557	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr3	111604541	rs1283007	G	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	111632614	rs1282947	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:104,61:0.37:165
chr3	111637904	rs2399399	G	A	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	111638132	rs951660	A	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	111638952	rs6779756	C	T	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	111639353	rs937551	G	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	111651285	rs754914	G	A	3454.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:66,156:0.70:222
chr3	111658486	rs712510	T	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	111659377	rs698358	T	C	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	111677505	rs62277620	T	C	3063.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:94,145:0.61:239
chr3	111677526	rs11713044	G	A	8649.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.34;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	111685328	rs774859	T	C	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	111685347	.	C	CGT	337.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=0.704;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr3	111685348	rs774858	A	G	1079.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chr3	111685374	.	G	GGTGTGT	1136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=4.179;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=16.72;ReadPosRankSum=1.291;SOR=1.383;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr3	111685659	rs80296143	A	G	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr3	111686738	rs799570	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr3	111688578	rs774854	C	T	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:102,60:0.37:162
chr3	111692829	rs774852	C	T	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	111693554	rs13077	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	111705275	rs150902974	G	GTTTGT	4421.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	111710201	rs71773737	AT	A	2915.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	111718446	rs35978996	G	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:77,43:0.36:120
chr3	111719493	rs774764	A	G	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	111719605	rs73232060	C	T	2890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=1.436;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:94,131:0.58:225
chr3	111719786	rs2292583	A	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:49,30:0.38:79
chr3	111730546	rs3749310	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	111730591	rs3749311	G	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr3	111730766	rs3828394	G	A	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:39,97:0.71:136
chr3	111732608	rs8070	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr3	111760771	rs774774	A	G	3864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.219;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:250,110:0.31:360
chr3	111760771	.	AAC	GAT	2916	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=50;NR=51;PP=2916;QD=20;SC=TTACAGGTAAAACAGAAAGCA;SbPval=0.45;Source=Platypus;TC=343;TCF=179;TCR=164;TR=101;WE=111760781;WS=111760761;set=Platypus	GT:AD:AF:DP	0/1:242,101:0.29:343
chr3	111760773	rs11929695	C	T	3864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=2.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.747;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:249,115:0.32:364
chr3	111763085	rs4682350	C	T	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	111763278	rs7650559	G	T	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	111765834	rs1561911	G	A	19234.77	.	AC=2;AF=1.00;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	1/1:0,736:1.00:736
chr3	111766215	rs1318554	A	G	9851.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr3	111766559	rs1688304	T	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr3	111768600	rs114815335	G	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.62;ReadPosRankSum=-0.076;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr3	111799845	rs340151	A	T	10871.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr3	111805438	rs3833596	G	GT	3989.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	111828384	rs5851818	G	GT	4109.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:102,173:0.63:275
chr3	111828423	rs340167	G	A	6201.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr3	111828476	rs2120095	A	G	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:64,114:0.64:178
chr3	111831723	rs67780840	T	TA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=1.135;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr3	111832104	rs117437624	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	111832120	rs340165	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr3	111843883	rs923745	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr3	111873996	rs7622733	C	T	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.238;QD=7.05;ReadPosRankSum=0.818;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr3	111885896	rs4682084	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	111898387	rs74367861	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr3	111904703	rs113370398	C	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;MQ=59.19;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	111918215	rs28516377	C	T	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.771;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:89,42:0.32:131
chr3	111918216	rs13098660	A	G	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.81;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	111921010	rs9821935	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=1.730;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr3	111921116	rs9288938	C	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-1.297;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr3	111921225	rs6781844	G	T	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	111923047	rs4422273	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	111923123	rs4434123	G	A	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	111926909	rs1492491	G	A	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	111936118	rs11921877	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	111936200	rs1388857	C	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	111950367	rs55735606	C	G	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr3	111962851	rs6768523	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr3	111981696	rs5851826	CA	C	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.75;MQRankSum=5.135;QD=8.66;ReadPosRankSum=-0.551;SOR=0.267;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr3	111981704	rs5003791	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.96;MQRankSum=4.552;QD=7.49;ReadPosRankSum=-1.198;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	111981849	rs9860819	C	T	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:345,183:0.35:528
chr3	111981878	rs9809384	T	C	3923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-1.685;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:366,218:0.37:584
chr3	111981924	rs9809404	T	C	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:317,186:0.37:503
chr3	111983197	rs6788397	C	T	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.365;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr3	111984970	rs4682098	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	111985107	rs9872691	T	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr3	111993716	rs6805112	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	111996554	rs9828502	T	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=1.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-1.585;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:86,45:0.34:131
chr3	111996726	rs6791182	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr3	111996730	rs9809174	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,17:0.38:45
chr3	111997510	rs12632408	T	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.861;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.921;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:18,21:0.54:39
chr3	111997791	rs13314977	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=1.139;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	111999736	rs147052896	A	ACTTGTTTTCT	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr3	112005423	rs7621431	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	112005691	rs79950192	C	G	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	112052173	rs9883527	T	C	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	112059768	rs1131199	C	G	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	112063705	rs3817425	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr3	112064204	rs41270439	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr3	112064263	rs11921546	T	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=0.655;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	112064266	rs60497880	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=0.403;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr3	112066562	rs1050572	G	A	5279.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:165,242:0.59:407
chr3	112068440	rs60377655	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	112068494	rs150687436	T	TCTATTGCTTTATCA	957.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr3	112068517	rs57404826	C	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chr3	112184927	rs2171513	A	G	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr3	112185025	rs9288952	G	A	11613.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:1,436:1.00:437
chr3	112190137	rs2931761	G	T	7539.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	112253058	rs35560667	C	CA	4295.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:33,228:0.87:261
chr3	112253193	rs11381118	C	CA	2799.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=0.505;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:81,178:0.69:259
chr3	112267523	rs9809247	G	A	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr3	112280218	rs2279532	G	A	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	112289320	rs9869455	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	112289372	rs9869579	G	A	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	112301458	rs5851844	C	CCTTAGTAAT	5302.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	112338027	rs13084615	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr3	112415652	rs10934180	G	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	112538571	rs35585943	CT	C	730.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,39:0.95:41
chr3	112546473	rs1997281	G	A	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr3	112642568	rs9865242	C	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:100,57:0.36:157
chr3	112647832	rs9826308	A	C	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.997;QD=5.94;ReadPosRankSum=-1.051;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:104,52:0.33:156
chr3	112647988	rs9868053	C	T	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.592;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=4.390;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.648;QD=4.88;ReadPosRankSum=0.661;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr3	112648125	rs6438117	G	T	5745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.071;QD=11.07;ReadPosRankSum=1.991;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:354,165:0.32:519
chr3	112648125	.	GGT	TGG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=23;MQ=59.98;NF=73;NR=78;PP=2944;QD=20;SC=TGATGGCCACGGTACGAATCT;SbPval=0.59;Source=Platypus;TC=490;TCF=242;TCR=248;TR=151;WE=112648135;WS=112648115;set=Platypus	GT:AD:AF:DP	0/1:339,151:0.31:490
chr3	112648127	rs4596117	T	G	5745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.554;QD=11.05;ReadPosRankSum=2.013;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:356,164:0.32:520
chr3	112648222	rs2171509	T	C	1026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-0.419;QD=5.11;ReadPosRankSum=-1.587;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:143,58:0.29:201
chr3	112649970	rs146696278	G	A	4675.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:141,222:0.61:363
chr3	112666859	rs2133946	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:83,43:0.34:126
chr3	112709828	rs2272393	C	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	112715974	.	C	T	428.77	.	AC=1;AF=0.500;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr3	112719791	rs200301737	CA	C	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.223;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:38,32:0.46:70
chr3	112727184	rs2306857	A	T	10126.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr3	112732309	rs5851869	GT	G	399.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=2.090;SOR=3.528;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr3	112738318	rs2293560	C	T	11524.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr3	112738625	rs7633507	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	112935138	rs4682130	C	G	4734.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:126,225:0.64:351
chr3	112993367	rs13094203	G	A	5751.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:194,268:0.58:462
chr3	112997554	rs775228	A	G	8025.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:216,374:0.63:590
chr3	112998268	rs2650100	G	A	5681.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:141,257:0.65:398
chr3	112999611	rs775229	A	G	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:64,109:0.63:173
chr3	113004155	rs41271355	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr3	113005743	rs146459508	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=8.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.528;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr3	113005754	rs5022662	A	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.839;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.232;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr3	113010303	rs17321330	G	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	113010466	rs2291905	T	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.474;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:35,27:0.44:62
chr3	113012797	rs810209	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:116,80:0.41:196
chr3	113012974	rs775217	A	G	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr3	113015436	rs808949	G	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr3	113015464	rs3829889	G	A	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:111,166:0.60:277
chr3	113015553	rs808950	A	C	5205.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:498,285:0.36:783
chr3	113022870	rs4682484	T	C	5882.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=1.497;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:2,235:0.99:237
chr3	113022996	rs2270782	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	113024018	rs2270785	T	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:91,184:0.67:275
chr3	113027214	rs775231	A	C	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	113045561	rs3732809	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr3	113046640	rs13064411	A	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr3	113115543	rs77501585	C	G	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:44,98:0.69:142
chr3	113119301	rs7647220	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	113138763	rs2129434	T	G	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-0.223;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:24,26:0.52:50
chr3	113164109	rs2054823	A	G	660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-1.492;SOR=0.291;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr3	113165288	rs4619761	A	T	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr3	113175944	rs5851894	TA	T	539.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr3	113176122	rs7637618	G	A	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:116,178:0.61:294
chr3	113207758	rs7625841	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:30,72:0.71:102
chr3	113211957	rs3732803	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	113212041	rs1471884	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr3	113218206	rs6798938	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	113222036	rs11537650	G	A	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.17;ReadPosRankSum=-0.367;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:21,60:0.74:81
chr3	113285185	rs71633326	TTG	T	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.733;QD=17.61;ReadPosRankSum=-0.804;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr3	113300183	rs2271494	A	T	2238.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:67,98:0.59:165
chr3	113331289	rs9842516	T	G	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr3	113373930	rs930818	A	G	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	113374409	rs74980526	G	A	4970.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:128,227:0.64:355
chr3	113376110	.	T	TTGCTGC	3438.73	.	AC=1;AF=0.500;AN=2;DP=399;set=Intersection	GT:AD:AF:DP	0/1:108,158:0.59:266
chr3	113378441	rs75490047	G	A	2919.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:356,168:0.32:524
chr3	113442784	.	C	CA	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.010;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr3	113499458	rs1430944	G	A	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	113557787	rs66781755	AGCC	A	14901.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr3	113588445	rs1469559	T	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	113594297	rs79592865	G	A	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr3	113595156	rs2712350	C	G	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	113619872	rs2632244	C	T	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	113634682	rs78547874	A	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr3	113655096	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=5.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=1.592;SOR=1.579;set=HC	GT:AD:AF:DP	0/1:80,18:0.18:98
chr3	113655207	rs3765114	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:212,98:0.32:310
chr3	113656833	rs1963015	C	G	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr3	113656852	rs5851908	C	CA	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.091;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr3	113659308	rs2029228	G	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr3	113664183	rs68028538	CAG	C	828.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr3	113673125	rs11921691	A	G	2521.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:236,133:0.36:369
chr3	113679725	rs3732785	C	T	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	113720624	rs6438178	C	T	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	113784007	rs34428541	A	AT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=1.708;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr3	113795834	rs7631864	G	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr3	113801826	rs13086657	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr3	113801965	rs13071100	T	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr3	113847602	rs201100588	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr3	113858350	rs2251177	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	113890815	rs6280	C	T	2714.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	113955055	rs11316836	GA	G	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.538;QD=2.46;ReadPosRankSum=-0.889;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:110,50:0.31:160
chr3	113955164	rs3732782	T	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:160,93:0.37:253
chr3	113955187	rs3732781	A	C	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:138,77:0.36:215
chr3	113955265	rs6438190	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:83,47:0.36:130
chr3	113955320	rs6438191	C	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:92,57:0.38:149
chr3	114026673	rs11714612	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr3	114027065	rs35641088	C	CGTGT	594.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	115529092	.	G	GTCTC	1323.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=0.500;QD=34.84;ReadPosRankSum=-1.296;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:3,35:0.92:38
chr3	115529360	rs2289269	A	G	5302.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.09;SOR=1.379;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr3	115529370	rs2289268	A	G	4941.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr3	116163634	rs138580275	GAC	G	1833.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr3	118269774	rs9816586	A	G	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:2,234:0.99:236
chr3	118269825	rs57227846	GT	G	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.005;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=8.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=1.913;SOR=1.853;set=HC	GT:AD:AF:DP	0/1:15,81:0.84:96
chr3	118621664	rs36052974	C	A	6493.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:180,303:0.63:483
chr3	118621833	rs73185803	T	C	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:82,133:0.62:215
chr3	118624631	rs6782002	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr3	118645118	rs9848979	A	G	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr3	118645201	rs16829163	A	T	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	118649060	rs2903250	G	T	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	118753542	rs73185835	G	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	118865801	rs4077931	C	T	3267.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:73,141:0.66:214
chr3	118865970	rs4077930	G	A	2871.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:299,160:0.35:459
chr3	118866515	rs9864127	C	T	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	118867047	rs9289122	C	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr3	118870025	rs11373158	A	AC	5808.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:79,167:0.68:246
chr3	118878789	rs13077000	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,35:0.40:88
chr3	118909159	rs9840317	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	118909962	rs3796356	T	C	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	118909987	rs3796357	C	T	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	118913261	rs36002465	T	TC	1408.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:112,59:0.35:171
chr3	118922650	rs55795433	C	CA	156.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	118930791	rs5868	G	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr3	118930884	rs6774	G	A	5072.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:139,238:0.63:377
chr3	118931389	rs6784208	C	T	14574.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr3	118935282	rs201470978	CACACGCACAT	C	222.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=9.810;MLEAC=1;MLEAF=0.500;MQ=61.84;MQRankSum=-1.052;QD=9.68;ReadPosRankSum=-0.791;SOR=0.033;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	118935284	rs68075325	CACGCACAT	C	199.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.434;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.806;MLEAC=1;MLEAF=0.500;MQ=61.84;MQRankSum=-0.222;QD=7.68;ReadPosRankSum=1.501;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr3	118935300	rs73187814	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=8.806;MLEAC=1;MLEAF=0.500;MQ=61.97;MQRankSum=-0.222;QD=8.03;ReadPosRankSum=-0.254;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr3	118945796	rs3764779	G	C	3664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=0.031;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:143,171:0.54:314
chr3	118948618	rs4422293	G	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr3	118948716	rs4422294	G	A	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:237,120:0.34:357
chr3	119013928	rs3732412	A	T	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:45,111:0.71:156
chr3	119101039	rs73187863	T	A	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:145,91:0.39:236
chr3	119109837	rs78837524	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr3	119112559	rs935616	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr3	119118104	rs4688001	A	G	7580.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr3	119120577	rs10511390	G	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr3	119120613	.	C	A	2589.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:71,115:0.62:186
chr3	119128628	rs1463139	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=0.398;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr3	119128634	rs1463138	T	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.05;ReadPosRankSum=-1.919;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr3	119133183	rs3732413	G	A	4821.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:143,219:0.60:362
chr3	119153798	rs34023538	G	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:74,92:0.55:166
chr3	119169978	rs13096213	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr3	119171280	rs1919586	C	G	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:160,220:0.58:380
chr3	119188895	rs6438531	C	G	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr3	119196166	rs3732420	T	C	2805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.13;ReadPosRankSum=0.433;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:113,139:0.55:252
chr3	119197285	rs4688005	A	G	4307.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:153,209:0.58:362
chr3	119197387	rs13078816	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr3	119198873	rs4688007	G	A	6867.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:237,317:0.57:554
chr3	119211294	rs1997341	A	G	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:113,161:0.59:274
chr3	119263680	rs2228017	C	T	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:231,125:0.35:356
chr3	119305169	rs20569	G	A	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:48,109:0.69:157
chr3	119305379	rs25676	T	A	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:275,115:0.29:390
chr3	119325907	rs2251566	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr3	119327604	rs5852212	GC	G	2793.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:44,101:0.70:145
chr3	119327653	rs1723969	T	C	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:95,198:0.68:293
chr3	119328449	rs3832185	CAGGCTTT	C	2568.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,66:0.55:121
chr3	119331874	rs2272270	C	T	2650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=-1.243;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:88,126:0.59:214
chr3	119331892	rs2272269	C	G	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:88,123:0.58:211
chr3	119332042	rs2272268	G	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr3	119334986	rs2247660	G	A	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:53,117:0.69:170
chr3	119336728	rs4688020	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr3	119338492	rs61733986	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr3	119338956	rs2280669	A	G	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:71,139:0.66:210
chr3	119339010	rs1877595	G	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:74,118:0.61:192
chr3	119339054	rs1877594	C	T	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr3	119348345	rs3054091	A	AT,ATT	3252.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.886;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.451;QD=13.96;ReadPosRankSum=0.219;SOR=0.729;set=HC	GT:AD:AF:DP	1/2:43,101,89:0.43,0.38:233
chr3	119367390	rs2688643	T	C	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	119373301	rs2688630	G	A	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr3	119373315	rs2688629	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr3	119395662	rs523476	C	G	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:110,56:0.34:166
chr3	119395799	rs2280578	A	C	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:33,89:0.73:122
chr3	119395865	rs368987137	CGGGGCGG	C	249.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-0.568;QD=8.92;ReadPosRankSum=0.824;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr3	119395870	.	CGGG	C	559.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.833;QD=22.39;ReadPosRankSum=-0.142;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	119422204	rs7624672	T	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	119426307	rs9848716	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.813;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:42,40:0.49:82
chr3	119434527	rs6438544	G	C	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	119459639	rs34948068	A	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr3	119459682	rs57901016	T	TTG	417.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	119501580	rs3841391	G	GC	1277.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr3	119501780	rs2472668	G	A	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	119501798	rs2461831	T	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	119529113	rs3732356	G	T	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	119531709	rs61755051	C	T	1320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.20;ReadPosRankSum=1.335;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:135,78:0.37:213
chr3	119533733	rs6785049	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr3	119533773	rs6797879	T	C	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	119533910	rs4058490	T	C	9558.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	119534153	rs2276707	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr3	119595503	rs1719895	A	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	119721171	rs12108149	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,25:0.44:57
chr3	119886548	rs9858566	G	C	10684.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr3	119886776	rs902790	T	A	7748.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	119892121	rs13064815	C	G	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr3	119900212	rs1488765	G	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr3	119900260	rs1488764	T	C	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	119904125	rs902791	A	G	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:2,383:0.99:385
chr3	119904315	rs902792	G	C	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	119905641	rs2319542	G	A	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr3	119911667	rs2319543	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	119912297	rs902793	C	A	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:139,79:0.36:218
chr3	119962322	rs1492272	G	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr3	120068155	rs10048964	G	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	120114637	rs1700	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr3	120123953	rs1147701	T	A	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	120130899	rs1259326	T	C	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.254;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=10.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.990;SOR=1.874;set=HC	GT:AD:AF:DP	0/1:80,22:0.22:102
chr3	120169641	rs1147708	T	C	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr3	120365631	rs2293735	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	120369575	rs3817627	T	G	10443.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:1,403:1.00:404
chr3	120371414	rs2551607	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	120389316	rs2255543	T	A	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:82,138:0.63:220
chr3	120413158	rs7612975	G	A	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	120428621	rs11720353	T	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.080;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:114,47:0.29:161
chr3	120461576	rs7647895	T	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr3	120500446	rs2229308	T	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	120673673	rs142292885	CT	C	652.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr3	120833993	rs16832111	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr3	120833994	rs17195251	G	A	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.388;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	120924764	rs74730846	C	T	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr3	121043357	rs76958336	C	A	4994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=0.135;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:209,244:0.54:453
chr3	121100116	rs35624942	GT	G	1476.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr3	121137976	rs6782025	C	T	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	121138015	rs6782033	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	121154974	rs1381057	T	C	6845.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	121155198	rs2030531	C	T	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	121186543	rs1381058	A	G	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	121195302	rs10591564	TACAC	T,TAC	3392.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.493;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.892;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.332;QD=27.58;ReadPosRankSum=-0.223;SOR=0.274;set=HC	GT:AD:AF:DP	1/2:5,38,80:0.31,0.65:123
chr3	121202433	rs201304336	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.911;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.473;QD=1.48;ReadPosRankSum=-2.097;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:70,27:0.28:97
chr3	121207637	rs3218642	G	T	5864.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:164,264:0.62:428
chr3	121208833	rs3218649	G	C	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	121212277	rs11351457	AT	A	3025.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:6,152:0.96:158
chr3	121228833	rs3732406	A	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	121238749	rs702018	G	A	8395.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr3	121241058	rs13059229	C	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	121263720	rs702017	C	A	12069.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr3	121265176	rs3806614	G	A	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	121265522	rs11714774	A	C	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	121339354	rs7640859	T	C	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	121339520	rs35295338	A	C	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:82,156:0.66:238
chr3	121340536	rs4676684	T	C	7127.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:183,332:0.64:515
chr3	121340955	rs148776238	G	A	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:195,113:0.37:308
chr3	121341019	rs142436040	A	T	5539.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:150,253:0.63:403
chr3	121341735	.	G	C	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=2.030;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:281,102:0.27:383
chr3	121350583	rs1128159	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr3	121350650	rs111914785	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,42:0.53:79
chr3	121350966	rs9869984	C	G	8687.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr3	121351338	rs2070180	C	T	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:364,244:0.40:608
chr3	121352068	rs150795147	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=8.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=-0.882;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr3	121353254	rs2070179	T	C	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:200,108:0.35:308
chr3	121353291	rs34667636	G	A	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:133,61:0.31:194
chr3	121354381	rs7620842	A	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr3	121388362	rs11363204	AT	A	390.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	121413637	rs34833153	G	A	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:119,175:0.60:294
chr3	121415610	rs33988592	G	A	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:157,109:0.41:266
chr3	121435621	rs9832267	T	C	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.664;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:219,61:0.22:280
chr3	121435624	rs9812411	C	T	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.867;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:213,62:0.23:275
chr3	121447904	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.362;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.809;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:42,11:0.21:53
chr3	121448675	rs28497949	T	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:85,69:0.45:154
chr3	121489439	rs148949254	TA	T	4608.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:110,162:0.60:272
chr3	121500479	rs149985093	TACACACACACACAC	T,TACACACACACAC	2245.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.63;ReadPosRankSum=-1.328;SOR=2.115;set=HC	GT:AD:AF:DP	1/2:1,37,33:0.52,0.46:71
chr3	121500699	rs17849995	C	T	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:85,106:0.55:191
chr3	121507371	rs141690316	CTTTTTA	C	2042.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr3	121507415	rs4073474	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	121508830	rs6802815	A	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.80;SOR=2.080;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	121508830	.	AAAAAAAAAT	TAAAAAAAAA,TAAAAAAAAT	965	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=8;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=16,52;NR=5,14;PP=250,965;QD=14.4508511839;SC=GTCCAAATTTAAAAAAAAATC;SbPval=0.46;Source=Platypus;TC=67;TCF=53;TCR=14;TR=21,66;WE=121508847;WS=121508820;set=Platypus	GT:AF:DP	0/1:0.31:67
chr3	121508839	.	T	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.534;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr3	121514458	rs141330650	TA	T	633.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:14,52:0.79:66
chr3	121526099	rs4582090	A	G	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.99;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	121526099	.	ATCATATGC	GTCATATGC,GTCATATGT	129	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=15;MMLQ=25;MQ=60.0;NF=12,4;NR=3,3;PP=129,47;QD=10.9180808365;SC=TTATATACAAATCATATGCGG;SbPval=0.59;Source=Platypus;TC=15;TCF=12;TCR=3;TR=15,7;WE=121526115;WS=121526089;set=Platypus	GT:AF:DP	0/1:1.00:15
chr3	121526152	rs5852278	TA	T	213.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr3	121526204	rs4543051	G	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	121547527	rs1920320	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr3	121563271	rs11717089	C	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr3	121563285	rs11721291	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr3	121613205	rs4603998	G	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	121630328	rs6438687	A	G	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr3	121633964	rs2049331	C	T	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.567;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-2.123;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr3	121634171	rs3215370	A	AT	1456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.398;QD=5.24;ReadPosRankSum=-0.589;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:182,96:0.35:278
chr3	121634410	rs9812515	T	A	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:185,94:0.34:279
chr3	121641528	rs7637569	G	A	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr3	121641693	rs2293616	G	A	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:204,111:0.35:315
chr3	121641821	rs2293615	A	G	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:199,85:0.30:284
chr3	121642048	rs3817601	A	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:154,86:0.36:240
chr3	121643143	rs3215371	A	AT	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.522;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr3	121643170	rs2257109	A	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:98,40:0.29:138
chr3	121643303	rs2257115	T	A	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:265,143:0.35:408
chr3	121643337	rs2257119	G	A	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:211,107:0.34:318
chr3	121643372	rs2257120	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:143,71:0.33:214
chr3	121643427	rs2257123	G	A	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-0.454;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr3	121643436	rs2257124	G	A	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.429;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=-0.098;SOR=2.288;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr3	121643447	rs34567530	A	AT	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr3	121643699	rs2257132	G	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr3	121643804	rs2257212	C	T	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.659;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:213,89:0.29:302
chr3	121643893	rs2257214	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:168,78:0.32:246
chr3	121646495	rs1882002	C	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:45,36:0.44:81
chr3	121646641	rs1143670	A	G	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:249,135:0.35:384
chr3	121646759	rs3762819	G	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,36:0.34:107
chr3	121647286	rs1143671	C	T	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:134,77:0.36:211
chr3	121647467	rs1316301	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr3	121647782	rs1316397	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr3	121648168	rs1143672	G	A	2695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.76;ReadPosRankSum=-0.390;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:312,156:0.33:468
chr3	121658082	rs874741	A	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr3	121659197	rs3817599	G	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr3	121712051	rs2877561	A	C	9616.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:1,364:1.00:365
chr3	121712805	rs3915061	G	C	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:50,79:0.61:129
chr3	121712980	rs3915060	C	T	14576.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,559:1.00:559
chr3	121720494	rs62269207	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr3	121720514	rs35657414	GT	G	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.955;QD=3.90;ReadPosRankSum=0.340;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr3	121810427	rs57304749	CT	C	6695.73	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:4,309:0.99:313
chr3	121825197	rs2681417	G	A	11291.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr3	121836966	rs10580127	TGA	T	6811.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr3	121838319	rs1129055	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	121976253	rs9869985	G	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	121994941	rs2279802	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr3	122000871	rs4678174	C	T	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:82,104:0.56:186
chr3	122001099	rs2270916	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr3	122003045	rs2036400	G	C	23015.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	1/1:0,848:1.00:848
chr3	122003769	rs1042636	A	G	9435.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:348,449:0.56:797
chr3	122003832	rs1801726	G	C	15147.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr3	122004098	rs4677948	A	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	122081659	rs9857709	AA	GC	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.783;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-2.960;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:162,28:0.15:190
chr3	122128466	rs4306808	G	C	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr3	122133321	rs6777596	C	T	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr3	122145810	rs4677950	T	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	122161101	rs9842736	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	122168341	rs3749209	C	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr3	122180011	rs56074178	C	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr3	122186188	rs4678193	C	T	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	122215166	rs10625209	A	AAC	579.19	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr3	122259606	rs9851180	T	C	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:267,163:0.38:430
chr3	122259745	rs9831600	G	T	1755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=4.070;QD=11.70;ReadPosRankSum=-2.986;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:94,56:0.37:150
chr3	122259782	rs9868934	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:55,22:0.29:77
chr3	122269380	rs1979853	A	G	41.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr3	122274988	.	TAAAAAAAAAAA	T	87.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.93;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr3	122277160	rs9289198	G	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:61,38:0.38:99
chr3	122277172	rs9289199	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:75,43:0.36:118
chr3	122283241	rs34377629	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	122285005	rs12485294	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr3	122288210	rs2332285	G	A	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:211,125:0.37:336
chr3	122296638	rs1875272	G	A	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr3	122418750	rs11719086	G	A	2043.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:180,104:0.37:284
chr3	122419292	rs7632072	A	G	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:256,139:0.35:395
chr3	122432171	rs6770902	G	A	1205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.764;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:110,62:0.36:172
chr3	122437321	rs7645033	T	C	14461.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr3	122437834	rs3821688	A	G	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:148,206:0.58:354
chr3	122437901	rs115027980	A	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:57,47:0.45:104
chr3	122439062	rs73856279	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr3	122439371	rs60507179	T	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr3	122439511	rs78443051	A	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:125,57:0.31:182
chr3	122439629	rs16833452	T	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:308,152:0.33:460
chr3	122439754	rs12492888	C	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr3	122446642	rs2303883	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:89,54:0.38:143
chr3	122459290	rs16338	G	GAGA	2101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.549;QD=10.40;ReadPosRankSum=0.809;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:142,60:0.30:202
chr3	122459732	rs35887395	G	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:145,92:0.39:237
chr3	122471407	rs72280610	TA	T	1195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.278;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.654;QD=9.49;ReadPosRankSum=1.231;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:30,96:0.76:126
chr3	122474284	.	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.533;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr3	122474305	rs6794019	C	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr3	122477743	rs11369405	C	CA	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-0.656;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr3	122477767	rs76020932	C	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.035;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr3	122477795	rs2137210	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr3	122478032	rs66939946	CCA	C,CCACACA	782.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;set=Intersection	GT:AF:DP	1/2:0.45,0.45:33
chr3	122512542	rs76805079	G	C	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,111:0.62:178
chr3	122512631	rs3806643	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	122513964	rs891406	A	C	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	122525555	rs35035359	G	GT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.534;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr3	122591230	rs147365074	G	A	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:184,86:0.32:270
chr3	122598291	rs2288677	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr3	122605544	rs9864868	G	A	3684.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:76,167:0.69:243
chr3	122629589	rs7622250	A	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.92;QD=22.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	122630323	rs2303982	T	G	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	122630346	rs2303983	T	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	122631896	rs2276782	A	T	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	122642294	rs7619187	T	C	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	122642401	rs2276780	G	A	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=-1.329;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,63:0.68:93
chr3	122642415	rs2276779	G	C	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.72;ReadPosRankSum=-0.172;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:37,78:0.68:115
chr3	122642590	rs2276778	G	A	1507.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:35,66:0.65:101
chr3	122645277	rs2276777	C	T	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:311,152:0.33:463
chr3	122645606	rs79543585	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr3	122646591	rs73856750	C	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr3	122646828	rs2276774	A	G	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.167;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:111,37:0.25:148
chr3	122646929	rs79679922	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr3	122647610	rs76653630	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr3	122680171	rs4677985	A	G	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:149,67:0.31:216
chr3	122807995	rs836860	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr3	122811042	rs836863	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr3	122821108	rs2717233	C	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	122821385	rs2241961	T	C	8146.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr3	122821478	rs2241962	T	A	1735.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.322;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.25;ReadPosRankSum=0.814;SOR=0.694;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr3	122821671	rs2241963	AT	GA	11530.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	122834887	rs836839	A	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr3	122835210	rs836840	A	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=0.286;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr3	122843020	rs836854	T	C	4948.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:422,263:0.38:685
chr3	122843110	rs861375	G	T	4302.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:319,216:0.40:535
chr3	122864436	rs8739	G	A	2810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=5.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=1.399;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:70,134:0.66:204
chr3	122864587	rs3215241	TAGAC	T	285.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	122865136	rs2673345	T	A	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:68,92:0.57:160
chr3	122873923	rs2717225	G	C	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	122880118	rs3828393	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr3	122942358	rs1546605	A	G	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr3	122942402	rs1546604	G	A	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:67,87:0.56:154
chr3	122964900	rs12493729	C	G	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:85,144:0.63:229
chr3	122978486	rs9289216	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:34,33:0.49:67
chr3	122990291	rs9860349	C	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr3	123008519	rs4677881	T	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	123010276	rs9809236	G	A	3398.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:307,180:0.37:487
chr3	123010363	rs56066738	C	T	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:39,71:0.65:110
chr3	123014877	rs9881951	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr3	123014904	rs56407630	C	T	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,63:0.61:104
chr3	123015094	rs9882534	G	C	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr3	123018963	rs4482616	A	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:178,88:0.33:266
chr3	123021838	rs9877581	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	123021870	rs9844212	G	C	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	123022740	.	G	GAAGAA	2018.73	.	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.81;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	123037047	rs4327330	A	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	123047666	rs9855969	A	G	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-2.301;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:237,85:0.26:322
chr3	123049678	rs4678009	C	T	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,25:0.33:76
chr3	123049938	rs6806529	A	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr3	123066555	rs112525497	A	AAAGG	10674.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	123086587	rs62263808	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.568;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	123086698	.	G	GA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597;ClippingRankSum=0.000;DP=435;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.289;QD=0.40;ReadPosRankSum=-1.588;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:352,69:0.16:421
chr3	123167249	rs4678027	G	A	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	123218524	rs148392509	TTAAAA	T	3623.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:65,94:0.59:159
chr3	123332875	rs11399895	G	GT	449.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.012;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=15.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-1.263;SOR=1.987;set=HC	GT:AD:AF:DP	0/1:135,60:0.31:195
chr3	123378534	rs39639	C	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr3	123411589	rs40305	G	A	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr3	123418913	rs865358	G	A	22507.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:0,863:1.00:863
chr3	123426984	rs7641248	T	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	123440967	rs820355	G	A	13820.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr3	123444785	rs820329	A	T	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:93,171:0.65:264
chr3	123451773	rs9833275	G	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	123452838	rs4678047	G	A	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	123456432	rs2168439	C	T	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	123457711	rs2198766	C	A	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	123457893	rs9840993	G	A	11231.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr3	123633612	rs11551801	G	A	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr3	123634046	rs2700373	G	A	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr3	123650432	rs2271969	A	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	123652476	rs6784695	G	A	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr3	123665902	rs17310144	T	G	8983.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr3	123666192	rs17375977	C	T	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	123674879	.	T	TA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.791;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:101,20:0.17:121
chr3	123688760	rs34337446	C	G	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	123694595	rs138944419	C	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.05;QD=24.64;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	123851972	rs7627646	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr3	123988039	rs2272486	T	C	3179.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:79,150:0.66:229
chr3	124044949	rs2289778	C	T	12898.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr3	124113929	rs482285	A	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,42:0.36:118
chr3	124114068	rs9841322	G	A	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:151,213:0.59:364
chr3	124128938	rs647010	A	G	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr3	124132263	rs2289846	A	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-1.471;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:77,33:0.30:110
chr3	124193286	rs10576467	CGAGA	C	154.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	124195987	rs572145	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr3	124196094	rs2289843	A	T	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:186,91:0.33:277
chr3	124196238	rs3214750	CT	C	2168.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:151,84:0.36:235
chr3	124210344	rs10755077	C	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr3	124281980	rs2256831	T	C	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:49,80:0.62:129
chr3	124303786	rs2250757	G	C	2964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.578;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:90,142:0.61:232
chr3	124351316	rs1708303	G	A	7789.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:161,346:0.68:507
chr3	124351424	rs1660038	T	C	5716.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:131,246:0.65:377
chr3	124352573	rs652046	A	G	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr3	124369640	rs11372663	T	TA	3780.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:62,108:0.64:170
chr3	124369650	rs2291988	T	C	4282.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:56,108:0.66:164
chr3	124374259	rs4677938	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	124374405	rs4677939	A	C	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:98,147:0.60:245
chr3	124376653	rs106520	G	A	6450.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:163,292:0.64:455
chr3	124377196	rs10804562	G	A	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr3	124378386	rs333297	C	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr3	124378412	rs10755078	A	G	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr3	124379641	rs333291	C	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr3	124379748	rs333290	G	C	4500.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:165,213:0.56:378
chr3	124379817	rs333289	T	C	5022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=0.411;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:173,246:0.59:419
chr3	124393595	rs333355	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr3	124393610	rs333354	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr3	124396338	rs333349	T	G	2132.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr3	124397249	rs35286809	AT	A	550.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.727;QD=8.34;ReadPosRankSum=-1.505;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:25,41:0.62:66
chr3	124397321	rs3830412	AT	A	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr3	124398571	rs821365	A	T	2151.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr3	124398589	rs821364	A	C	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr3	124412524	rs2289428	T	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,70:0.61:115
chr3	124412634	rs333283	G	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:71,87:0.55:158
chr3	124416698	rs333277	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr3	124605736	rs6438861	T	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	124629222	rs34208404	TA	T	2232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.308;QD=9.67;ReadPosRankSum=1.011;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:77,154:0.67:231
chr3	124642579	rs60525593	C	T	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:131,138:0.51:269
chr3	124646594	rs4679392	A	G	10459.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	124646705	rs10630030	A	AAAG	11735.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr3	124653710	rs10934701	A	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr3	124728472	rs6438868	C	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	124728626	rs6438869	A	G	7900.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	124729193	rs6784454	T	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	124731485	rs10804567	C	G	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	124732618	rs6790837	A	G	6559.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr3	124732842	rs6438871	C	A	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	124733649	rs6438873	T	G	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	124738107	rs59232004	C	T	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	124739892	rs6438874	G	A	10426.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr3	124746049	rs2981546	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	124746182	rs2333041	C	A	6717.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,250:1.00:251
chr3	124746347	rs4404487	T	C	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr3	124748226	rs2860440	G	A	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr3	124774665	.	G	GCAT	1201.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr3	124774779	rs200147885	A	AGGGCAGC	745.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	124802677	rs1574340	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr3	124802881	rs2981483	A	G	4223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.82;ReadPosRankSum=0.888;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:170,115:0.40:285
chr3	124802888	rs2981482	C	T	4211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.133;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=3.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=1.748;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:175,115:0.40:290
chr3	124803043	rs2981481	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr3	124826956	rs182863165	T	C	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:83,39:0.32:122
chr3	124837684	rs621383	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	124839470	rs863642	G	A	16739.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr3	124854425	rs702048	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	124854636	rs2981503	A	T	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr3	124896475	rs143015454	A	AGGTAAAGCCTAT	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.976;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:34,4:0.11:38
chr3	124896668	rs2993631	G	A	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:222,137:0.38:359
chr3	124896861	rs545103	C	G	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	124909178	rs4679159	T	G	8304.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:235,377:0.62:612
chr3	124912207	rs13322132	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.969;QD=5.47;ReadPosRankSum=-0.757;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:74,38:0.34:112
chr3	124951171	rs35950048	CT	C	1264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.767;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.862;QD=9.80;ReadPosRankSum=2.162;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:27,102:0.79:129
chr3	124951821	rs1053738	C	T	10302.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	124998098	rs10665336	C	CAAA	1458.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;QD=33.15;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr3	125179732	rs112803860	C	CATAA	1286.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	125195707	rs6785216	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr3	125216130	rs9841499	G	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-3.078;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr3	125223456	rs2076724	C	T	9412.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,364:1.00:364
chr3	125238792	.	G	GGCCCGGCCCAGCTCAGCCCAGCCCAGCCCAGCCCA	2341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.374;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.752;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=4.499;QD=19.35;ReadPosRankSum=3.707;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:81,40:0.33:121
chr3	125249340	rs2294053	G	A	4798.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:90,214:0.70:304
chr3	125250610	rs62270201	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr3	125250899	rs56256275	A	G	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,82:0.66:124
chr3	125250956	rs9867731	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr3	125266387	rs35535572	G	A	5258.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:146,241:0.62:387
chr3	125270985	rs10541213	GTATA	G	899.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr3	125279122	rs12487030	A	T	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=-1.663;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:21,50:0.70:71
chr3	125279444	rs12496976	T	C	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr3	125297715	rs2922184	A	G	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	125301711	rs2979382	C	G	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	125701099	rs2270986	T	C	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr3	125725268	rs111477552	TAACA	T	5849.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:105,150:0.59:255
chr3	125725559	rs1044215	C	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:18,36:0.67:54
chr3	125726048	rs2279819	G	C	4612.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr3	125734272	rs2279820	G	A	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:80,51:0.39:131
chr3	125734308	rs2279821	G	A	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:89,133:0.60:222
chr3	125734465	rs9862310	G	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:223,132:0.37:355
chr3	125741592	rs3817079	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr3	125741901	rs2270984	A	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr3	125741925	rs2270983	T	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr3	125745433	rs7646705	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr3	125775228	rs7613944	T	C	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr3	125775428	rs6438964	G	A	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr3	125786662	rs36125006	G	GA	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr3	125786695	rs4308225	G	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:55,80:0.59:135
chr3	125786760	rs4308226	G	A	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:102,160:0.61:262
chr3	125786879	rs4234270	T	C	7234.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr3	125824334	rs4646755	T	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	125824382	rs10934744	C	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr3	125826059	rs1127717	T	C	4561.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:130,205:0.61:335
chr3	125831572	rs4646744	GGC	G	3025.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,76:0.68:112
chr3	125843400	rs3217578	A	AG	783.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr3	125844718	rs2278756	G	A	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:44,64:0.59:108
chr3	125848911	rs1868125	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	125848945	rs2365002	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr3	125849031	rs873696	C	T	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr3	125849238	rs2002287	G	A	2040.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:42,93:0.69:135
chr3	125850101	rs4646733	CA	TG	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr3	125850169	rs3821451	T	C	3433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=8.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-0.519;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:91,160:0.64:251
chr3	125850193	rs3816366	A	G	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:137,212:0.61:349
chr3	125850381	rs2305228	A	G	2203.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:73,101:0.58:174
chr3	125850434	rs2305227	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr3	125854311	rs3216713	TC	T	6890.73	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:189,269:0.59:458
chr3	125856916	rs6799991	A	G	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr3	125874388	rs2276731	C	T	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	126133239	rs6775131	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	126138778	rs2271630	T	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:44,66:0.60:110
chr3	126142496	rs13064828	T	C	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:103,135:0.57:238
chr3	126151797	rs35133442	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr3	126157464	rs11444454	T	TG	1199.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:24,43:0.64:67
chr3	126158622	rs1799404	A	C	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:104,115:0.53:219
chr3	126160884	rs63288960	CATTA	C	934.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr3	126169091	rs777493	T	C	9458.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr3	126169230	rs777494	C	T	15697.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr3	126169472	rs777495	T	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	126181071	rs6775965	A	C	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr3	126184941	rs1799389	C	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr3	126185238	rs1687463	C	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr3	126185265	rs3830336	A	AT	627.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr3	126189919	rs777499	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chr3	126194076	rs812367	T	C	2350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.964;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:247,137:0.36:384
chr3	126194357	rs7624748	G	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.10;SOR=1.769;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr3	126202147	rs79648980	G	A	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:125,191:0.60:316
chr3	126202257	rs1687477	G	A	4902.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:367,257:0.41:624
chr3	126207222	rs777483	A	G	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr3	126208249	rs777479	A	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:88,43:0.33:131
chr3	126211479	rs2307882	C	CCTCT	918.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=1.727;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:59,27:0.31:86
chr3	126215130	rs6797423	G	A	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	126216829	rs13098666	T	A	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.724;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:71,94:0.57:165
chr3	126218167	rs1168595	G	A	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:123,119:0.49:242
chr3	126218769	rs35907154	T	C	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,33:0.59:56
chr3	126218788	rs6774768	T	C	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr3	126219030	rs13072404	T	C	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:135,245:0.64:380
chr3	126219086	rs13092625	A	G	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:53,91:0.63:144
chr3	126219117	rs13092793	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr3	126219973	rs1177565	T	C	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr3	126220539	rs9844797	A	G	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.617;SOR=0.216;set=HC	GT:AD:AF:DP	0/1:21,38:0.64:59
chr3	126220845	rs7643584	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr3	126226518	rs9784244	C	T	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	126227185	rs16837531	G	A	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	126228410	rs729456	G	A	5121.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.87;ReadPosRankSum=0.291;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:2,196:0.99:198
chr3	126236348	rs1687480	T	C	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr3	126268953	rs869464	T	G	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	126270757	rs13071443	G	T	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	126328101	rs9856833	A	G	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr3	126329910	rs777241	A	G	8728.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr3	126340553	rs3732534	G	A	4478.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr3	126365127	rs11453652	C	CT	5310.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr3	126373994	rs3108755	A	G	9142.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr3	126451805	rs2272488	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:59,20:0.25:79
chr3	126451937	rs2272487	G	T	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:178,111:0.38:289
chr3	126452133	rs6800807	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr3	126571679	rs2166909	C	T	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr3	126633419	rs2303994	C	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr3	126644974	rs732462	G	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr3	126708453	rs6773789	T	C	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.849;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:406,170:0.30:576
chr3	126722168	.	C	T	2445.77	.	AC=1;AF=0.500;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	0/1:330,139:0.30:469
chr3	126723549	rs28710010	C	T	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=4.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=1.092;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:123,75:0.38:198
chr3	126724881	rs12489348	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:88,97:0.52:185
chr3	126726705	rs9876615	A	G	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:175,97:0.36:272
chr3	126726803	rs9876778	A	G	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:107,71:0.40:178
chr3	126735453	rs9858521	C	T	8331.77	.	AC=1;AF=0.500;AN=2;DB;DP=1307;set=Intersection	GT:AD:AF:DP	0/1:842,461:0.35:1303
chr3	126737268	rs4679323	C	A	10228.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	126739012	rs891762	G	T	3103.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:112,144:0.56:256
chr3	126739291	rs6439030	T	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	126741011	rs9289290	G	A	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:293,182:0.38:475
chr3	126748689	rs2241676	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr3	126749017	rs2241675	T	C	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr3	126751689	rs6439031	G	A	12400.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr3	126880488	rs7625800	T	C	6285.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr3	126881192	rs78344584	A	G	6505.77	.	AC=1;AF=0.500;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	0/1:555,351:0.39:906
chr3	127105975	rs11407470	T	TA	1005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=1.204;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:111,90:0.45:201
chr3	127323830	rs893293	C	T	8632.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr3	127336934	rs782427	A	G	14794.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:1,578:1.00:579
chr3	127379270	rs920232	C	T	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:200,121:0.38:321
chr3	127379313	rs143584641	A	G	4550.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:121,216:0.64:337
chr3	127388150	rs2304551	A	G	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr3	127391018	rs813633	A	G	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr3	127395817	rs35834653	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:190,109:0.36:299
chr3	127396220	rs1658037	T	C	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr3	127410937	rs11433015	A	AT	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.43;ReadPosRankSum=-0.967;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr3	127410957	rs377758577	TTG	T	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.516;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=1.834;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr3	127410959	rs814130	G	T	211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.299;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.25;ReadPosRankSum=-1.834;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr3	127413881	rs4881	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:247,115:0.32:362
chr3	127434580	rs627498	G	A	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:164,169:0.51:333
chr3	127434856	rs477554	C	T	1933.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:41,83:0.67:124
chr3	127775788	rs9847934	T	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=28.36;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	127983495	rs2811544	T	C	9168.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr3	128181777	rs2659690	A	G	6505.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:162,313:0.66:475
chr3	128204951	rs2335052	C	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:108,50:0.32:158
chr3	128205519	rs4577488	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.523;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr3	128205860	rs1573858	G	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	128292062	rs200346912	CT	C	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.427;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,43:0.33:132
chr3	128292213	rs2734046	A	G	8498.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr3	128292318	rs147519916	ATC	A	782.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=654;ExcessHet=3.0103;FS=0.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=0.883;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:492,76:0.13:568
chr3	128526409	rs61758751	C	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:119,63:0.35:182
chr3	128618366	rs371460179	GGT	G	157.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr3	128755814	rs3732429	T	C	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:202,96:0.32:298
chr3	128755953	rs3732430	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr3	128755971	rs3732431	G	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr3	128757560	rs2306529	C	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr3	128853622	rs7646403	C	G	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	128859202	rs10664499	C	CTTAG	11746.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr3	128864520	rs9842978	C	G	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr3	128864540	rs9880527	A	G	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	128877521	rs4452346	C	T	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	128890350	rs4303883	G	A	12118.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr3	128993029	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.055;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr3	129020778	rs6765930	A	G	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	129100288	rs62266952	A	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	129168854	.	C	CT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=5.586;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.779;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr3	129185661	rs6805886	C	A	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	129279597	rs2713627	C	T	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.062;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	129281866	rs2713626	G	C	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:55,97:0.64:152
chr3	129281980	rs2713625	C	T	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	129282137	rs2713624	TG	CA	2911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.647;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.41;ReadPosRankSum=0.138;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:59,77:0.57:136
chr3	129284415	rs2625972	G	T	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr3	129284637	rs2245469	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr3	129284818	rs2625973	A	C	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:79,121:0.60:200
chr3	129286413	rs2245285	G	C	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:146,220:0.60:366
chr3	129286531	rs2245281	C	A	7376.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:195,330:0.63:525
chr3	129286635	rs2245278	G	A	4815.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:111,218:0.66:329
chr3	129289831	rs2244962	A	G	7540.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:200,341:0.63:541
chr3	129290187	rs2285367	T	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr3	129291751	rs2244708	T	C	7165.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:169,340:0.67:509
chr3	129293183	rs2625962	T	C	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	129293256	rs2255703	T	C	5485.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:106,247:0.70:353
chr3	129294568	rs746210	G	A	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:109,211:0.66:320
chr3	129297478	rs11708809	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr3	129303197	rs2811463	T	C	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	129303436	rs2811462	T	G	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:73,159:0.69:232
chr3	129303488	rs58763722	C	G	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr3	129308096	rs13079843	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	129308209	rs2285373	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr3	129324127	.	C	CCCG	918.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=61.30;MQRankSum=3.434;QD=19.55;ReadPosRankSum=0.797;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	129324193	rs7619850	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	129546729	rs784689	T	C	10886.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr3	129694934	rs784705	C	A	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	129695538	rs784704	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	129695714	rs5660	T	C	11227.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:375,540:0.59:915
chr3	129695954	rs5662	T	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	129696041	rs5663	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	129696105	rs5664	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr3	130114408	rs5852594	AC	A	3623.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	130116696	rs12488457	A	C	10309.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr3	130120027	rs181508978	T	G	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:130,172:0.57:302
chr3	130122409	rs5852595	TG	T	6129.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:5,216:0.98:221
chr3	130124270	rs1497313	A	G	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	130124491	rs10934940	G	A	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	130124989	rs4688761	C	T	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	130125116	rs1497312	G	C	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	130132302	rs11717623	T	A	12069.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr3	130132302	.	TAG	AAT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=22;MQ=60.0;NF=138;NR=105;PP=2947;QD=20;SC=TACTTATGTCTAGCAGAGAAT;SbPval=0.52;Source=Platypus;TC=248;TCF=141;TCR=107;TR=243;WE=130132312;WS=130132292;set=Platypus	GT:AD:AF:DP	1/1:5,243:0.98:248
chr3	130132304	rs11713542	G	T	12069.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	130132509	rs2219026	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr3	130132851	rs10512767	A	G	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr3	130134492	rs16827497	T	C	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr3	130134563	rs7628563	G	A	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	130135456	rs6439233	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	130135575	rs4688798	A	T	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	130137866	rs13062453	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	130142587	rs35980322	AT	A	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=21.26;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	130144984	rs1874599	G	C	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	130158343	rs2403340	C	T	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	130162395	rs9883988	A	G	7348.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	130174334	rs819085	G	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	130187817	rs322113	T	C	11478.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr3	130189918	rs10668406	T	TTG	515.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.856;QD=19.84;ReadPosRankSum=1.956;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr3	130190630	rs322117	G	A	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.74;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr3	130190720	rs11355796	AT	A	6489.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	130190777	rs322118	G	A	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	130195984	.	G	A	506.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	130284284	rs9830253	G	A	15466.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr3	130286886	rs9836961	T	C	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	130289617	rs10934949	T	C	7691.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr3	130300650	rs6439249	T	C	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr3	130308702	rs4515022	A	G	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	130313017	rs1467015	T	G	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	130317341	rs4336088	G	A	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr3	130360600	.	TA	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.339;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr3	130361856	rs16830494	G	A	2642.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,117:0.63:187
chr3	130361930	rs10934950	AC	CT	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	0/1:29,42:0.59:71
chr3	130367860	rs10695462	C	CT	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.158;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr3	130368069	rs7614116	A	G	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr3	130368301	rs7636656	G	A	6680.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:210,310:0.60:520
chr3	130383973	rs59386806	G	A	6407.77	.	AC=1;AF=0.500;AN=2;DB;DP=1019;set=Intersection	GT:AD:AF:DP	0/1:662,354:0.35:1016
chr3	130398468	rs12495186	T	C	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr3	130400507	.	C	T	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.642;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=4.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=1.261;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:72,105:0.59:177
chr3	130403182	.	C	G	636.77	.	AC=1;AF=0.500;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	0/1:98,38:0.28:136
chr3	130424390	rs75791598	C	A	3193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=-0.977;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:198,92:0.32:290
chr3	130424393	rs7652761	C	T	3199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-0.414;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:204,92:0.31:296
chr3	130447530	rs5852606	T	TA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=-1.682;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	130449222	rs2170990	A	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr3	130454884	rs111464199	T	TA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=9.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.043;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr3	130569557	rs1316658	T	G	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	130674022	rs218494	A	G	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	130711966	.	G	GT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=2.329;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr3	130748733	rs9864242	A	G	4629.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	130828790	rs9850655	G	A	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	130851101	rs4974466	A	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	130852185	rs2674613	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	130873723	rs1400013	T	G	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr3	130881409	rs1913898	T	C	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr3	130947435	rs3738000	A	T	1826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=0.921;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:65,91:0.58:156
chr3	131186893	rs56928817	CA	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=0.144;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr3	131188377	rs3830301	TAC	T	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.528;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr3	131261662	rs10716194	TG	T	8226.73	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr3	131404572	rs6439314	A	C	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	131404641	rs6439315	C	A	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:158,176:0.53:334
chr3	131415340	rs2369134	C	T	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:55,116:0.68:171
chr3	131418966	rs3883881	T	C	154.18	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr3	131756241	rs2141570	T	C	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr3	131756375	rs1569281	A	G	9821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-0.081;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:224,468:0.68:692
chr3	131756546	rs2178384	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr3	132063914	rs972774	A	T	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:177,85:0.32:262
chr3	132068831	rs2228402	C	T	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.303;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:127,43:0.25:170
chr3	132068876	rs2290542	G	A	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=-1.110;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:99,55:0.36:154
chr3	132068925	rs2290541	A	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:95,49:0.34:144
chr3	132069028	rs3217658	CAAG	C	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr3	132071452	rs17242113	G	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,23:0.32:71
chr3	132075554	rs3181784	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:42,42:0.50:84
chr3	132075707	rs2071505	A	G	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:226,134:0.37:360
chr3	132075746	rs1042330	G	A	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:144,103:0.42:247
chr3	132153228	.	C	CA	390.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.37;ReadPosRankSum=-0.786;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr3	132173004	.	AT	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.625;QD=0.30;ReadPosRankSum=-0.196;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr3	132176310	rs75854838	G	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr3	132179072	rs57140786	GT	G	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.336;QD=3.33;ReadPosRankSum=-0.233;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:75,39:0.34:114
chr3	132196816	rs2369796	A	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=1.568;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:88,40:0.31:128
chr3	132218196	rs2088712	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:82,33:0.29:115
chr3	132218623	rs3762672	G	T	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:230,123:0.35:353
chr3	132221076	rs200192843	CTT	C,CT	1800.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.619;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.08;MQRankSum=0.372;QD=13.64;ReadPosRankSum=-0.909;SOR=0.425;set=HC	GT:AD:AF:DP	1/2:13,36,83:0.27,0.63:132
chr3	132235077	rs3762677	C	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	132244406	rs754993	G	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=2.478;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:69,44:0.39:113
chr3	132278655	.	T	C	856.77	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:108,50:0.32:158
chr3	132360883	rs821572	C	T	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr3	132363752	.	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.226;QD=0.28;ReadPosRankSum=0.067;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:125,30:0.19:155
chr3	132409501	rs62292468	A	G	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:191,95:0.33:286
chr3	132436901	rs35348816	AT	A	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr3	133114893	rs1197300	C	T	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	133166403	rs7644197	A	G	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr3	133167363	rs2276737	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr3	133185834	rs2737717	T	C	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:83,56:0.40:139
chr3	133329943	rs1444601	G	A	8302.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	133335787	rs3732574	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	133341988	rs10935070	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	133368362	rs3192149	T	G	11328.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr3	133374030	rs7639941	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	133375785	rs2718801	G	A	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	133380130	rs2718805	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	133465283	rs1130459	A	G	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	133474328	rs12769	G	A	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:3,277:0.99:280
chr3	133483696	rs1880669	T	C	4550.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr3	133485133	rs2692696	A	G	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	133485371	rs1525891	G	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr3	133486958	rs8649	G	C	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:96,57:0.37:153
chr3	133489583	rs1525890	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr3	133493705	rs35736766	GT	G	1569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.561;QD=11.54;ReadPosRankSum=-0.407;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:31,105:0.77:136
chr3	133493827	rs2715626	T	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:108,58:0.35:166
chr3	133524591	rs60142346	A	G	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:41,64:0.61:105
chr3	133547692	rs2293373	G	A	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:102,176:0.63:278
chr3	133553527	rs2280672	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:62,39:0.39:101
chr3	133556964	rs139009223	ACCGTGCCGGGCC	A	2207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.579;QD=10.67;ReadPosRankSum=1.728;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:142,65:0.31:207
chr3	133583647	rs3811645	G	A	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr3	133666209	rs34550074	C	T	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	133667646	rs55943046	C	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	133670073	rs6767412	T	C	6140.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:131,275:0.68:406
chr3	133670225	rs6767522	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr3	133692497	rs4634113	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr3	133692743	rs4241362	C	T	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	133698280	rs4640563	C	G	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr3	133698397	.	G	T	1704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=0.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.196;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:278,107:0.28:385
chr3	133877113	rs56088702	A	G	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.417;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:190,99:0.34:289
chr3	133969437	.	A	AG	1192.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	133969487	.	G	GC	531.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr3	134077470	rs1353776	C	G	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	134079019	rs151045996	C	G	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:152,85:0.36:237
chr3	134080661	rs1077718	A	G	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	134214042	rs62269547	T	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	134225969	rs9827878	T	C	3126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-2.513;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:90,153:0.63:243
chr3	134226159	rs6766818	C	T	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	134256159	rs12634127	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr3	134264859	rs1357762	A	C	304.56	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr3	134266148	rs12632372	G	C	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr3	134266403	.	T	TA	127.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	134270598	rs77239771	C	T	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=22.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr3	134270886	rs9821505	A	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	134278270	rs1127826	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:91,50:0.35:141
chr3	134280395	rs6777283	T	A	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	134293619	rs4586863	A	G	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	134322742	rs2293293	A	G	9639.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr3	134323156	rs4955535	A	G	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	134331874	rs7626611	T	C	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	134331980	rs9838119	C	T	4477.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr3	134332150	rs74601883	G	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr3	134514579	rs9852662	T	C	21331.77	.	AC=2;AF=1.00;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr3	134697009	rs373709784	A	AC	96.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	134825512	rs3732567	G	C	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr3	134880745	rs2270882	G	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr3	134884652	rs1159404	A	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	134898742	rs1042787	C	T	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	134920306	rs2270881	C	T	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:92,65:0.41:157
chr3	134968465	rs4243397	T	C	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	135720241	rs4678432	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr3	135720851	rs6779903	G	T	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-0.001;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:250,116:0.32:366
chr3	135742057	rs113986045	G	GTGTTTTGTTT	1295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=10.697;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.131;QD=16.20;ReadPosRankSum=-0.406;SOR=0.057;set=HC	GT:AD:AF:DP	0/1:44,36:0.45:80
chr3	135759669	rs3832193	T	TG	1261.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:82,47:0.36:129
chr3	135913665	rs1992952	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	136002809	rs3821445	T	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr3	136059537	rs503973	G	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:44,71:0.62:115
chr3	136218930	rs900048	C	T	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr3	136573289	rs9865545	G	A	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:75,97:0.56:172
chr3	136573440	rs9827648	A	G	5017.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:176,224:0.56:400
chr3	136574501	rs1052618	A	G	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:37,57:0.61:94
chr3	136574578	rs3076229	T	TTAA	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr3	136649463	rs7648817	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr3	136677064	rs6773440	A	G	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr3	136699133	rs5852860	CT	C	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.538;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:6,24:0.80:30
chr3	136701295	rs361239	G	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr3	137717991	rs6764398	G	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr3	137743508	rs17204075	A	T	2717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=0.898;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:102,131:0.56:233
chr3	137748521	rs41265449	T	G	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr3	137748586	rs41265451	G	A	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:80,142:0.64:222
chr3	137748822	rs58607601	C	CA	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr3	137749839	rs16847742	A	G	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:41,109:0.73:150
chr3	137750056	rs55923693	T	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr3	137781923	rs329388	A	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	137783700	rs179282	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr3	137786442	rs442800	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:98,64:0.40:162
chr3	137786696	rs3856632	G	A	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	137787047	rs374045	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	137787192	rs446644	T	C	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	137787282	rs419075	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	137787355	rs446847	T	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	137787935	rs382629	G	A	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr3	137787963	rs445025	T	G	5498.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.259;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-0.633;SOR=0.419;set=HC	GT:AD:AF:DP	1/1:1,215:1.00:216
chr3	137788123	rs425938	T	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	137788141	rs407009	T	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr3	137796362	rs75242141	G	A	5297.77	.	AC=1;AF=0.500;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	0/1:581,299:0.34:880
chr3	137799291	rs384828	A	T	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.020;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:59,34:0.37:93
chr3	137799498	rs405602	T	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	137800656	rs2622711	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:53,16:0.23:69
chr3	137807259	rs2724693	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chr3	137816817	rs7629243	A	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:53,17:0.24:70
chr3	137843018	rs1564496	G	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.040;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:76,37:0.33:113
chr3	137843106	rs2170309	T	C	1275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.545;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:226,86:0.28:312
chr3	137843476	rs2246945	G	T	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=2.981;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:265,99:0.27:364
chr3	137850003	rs2724691	A	G	1618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.386;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:232,98:0.30:330
chr3	137880695	rs9851548	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:91,87:0.49:178
chr3	137880743	rs2622736	G	A	2738.73	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:200,139:0.41:339
chr3	137881265	rs3732839	T	A	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:255,174:0.41:429
chr3	137882377	rs2622734	G	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr3	137882752	rs2622733	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:74,49:0.40:123
chr3	137892531	.	G	GA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.997;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr3	137907220	.	G	GT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=6.314;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.116;QD=0.84;ReadPosRankSum=-1.659;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:103,27:0.21:130
chr3	138020275	rs7637162	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	138020677	rs6801411	C	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	138025136	rs3856636	T	G	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	138025396	rs9846480	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr3	138033181	rs9289556	C	T	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr3	138043535	rs66497165	TACACACAC	T	1070.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=42.83;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	138091701	rs1199333	G	T	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	138170788	rs13095961	T	G	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:88,135:0.61:223
chr3	138188485	rs13316499	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr3	138189031	rs2347469	T	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr3	138189658	rs3813264	A	G	1981.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:52,88:0.63:140
chr3	138193025	.	C	CT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.172;QD=0.35;ReadPosRankSum=0.475;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:212,39:0.16:251
chr3	138213849	rs10593783	ATTTGT	A	898.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr3	138244400	rs9878436	C	T	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	138251302	rs7643973	G	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	138251447	rs10549552	CGGTAT	C	2547.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	138256252	rs542010	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	138341284	.	C	CT	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.312;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.383;QD=1.88;ReadPosRankSum=0.647;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr3	138668233	.	C	CGT	66	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=23;MQ=58.51;NF=3;NR=0;PP=66;QD=23.3333333333;SC=TATGCATGTGCGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=13;TCF=8;TCR=5;TR=3;WE=138668241;WS=138668223;set=Platypus	GT:AD:AF:DP	0/1:10,3:0.23:13
chr3	138724757	rs11924188	C	G	16267.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr3	138725162	rs113724862	C	T	169.79	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr3	138739617	rs1720230	A	G	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	138882076	rs9843067	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr3	139065988	rs1610195	C	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	139066902	rs10755092	A	T	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	139068008	rs11706615	T	A	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	139068277	rs10935321	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr3	139075644	rs9878548	C	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	139075938	rs7833	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	139077527	.	G	GA	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.760;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=5.577;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-0.066;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:203,49:0.19:252
chr3	139077793	rs79405042	C	T	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr3	139081416	rs57549985	TTA	T	556.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr3	139088481	rs11717119	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr3	139090736	rs7373116	G	A	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:106,149:0.58:255
chr3	139098357	rs9831108	A	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr3	139102120	rs7373302	C	A	9367.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr3	139108250	rs3215032	C	CTG	2893.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	139195177	rs2233815	C	T	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:174,78:0.31:252
chr3	139236683	rs2071388	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr3	139246382	rs295493	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr3	139257545	rs34662123	GC	G	1638.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr3	139280328	rs35898558	G	GA	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr3	139318241	rs1846021	A	T	2917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=5.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.368;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:113,141:0.56:254
chr3	139654444	rs9821708	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr3	139654466	rs9821843	T	C	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr3	140122341	rs4683494	G	A	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr3	140167536	rs2081803	A	G	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr3	140167636	rs144791859	CA	C	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr3	140178485	rs7632885	G	A	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:292,180:0.38:472
chr3	140178638	rs10590825	CCCT	C	2449.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:163,72:0.31:235
chr3	140185294	rs533657	G	A	320.18	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr3	140185367	rs9631463	G	A	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:32,39:0.55:71
chr3	140251487	rs349536	T	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr3	140277734	rs72980136	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr3	140281723	rs11714465	C	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.773;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:185,68:0.27:253
chr3	140282084	rs4683509	C	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	140282718	rs74938120	T	G	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,70:0.65:107
chr3	140282861	rs10804675	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:289,172:0.37:461
chr3	140285115	rs4683510	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	140401693	rs698673	A	G	17402.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr3	140675348	.	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=3.908;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.274;QD=2.57;ReadPosRankSum=-0.009;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:71,45:0.39:116
chr3	140678384	.	T	TA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.000;QD=1.05;ReadPosRankSum=0.418;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chr3	140682087	.	T	TA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=5.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=2.064;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr3	140692486	rs2555707	G	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	140784964	.	G	A	574.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr3	140979184	rs1511378	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	140998214	rs13087169	G	A	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:171,107:0.38:278
chr3	141277651	rs13084444	T	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	141299397	rs10635293	T	TACACAC	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.718;QD=12.02;ReadPosRankSum=1.476;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr3	141327474	rs295323	G	A	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:218,114:0.34:332
chr3	141327593	rs2312266	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,27:0.29:93
chr3	141331222	rs2172471	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,23:0.40:58
chr3	141535558	rs36009541	A	G	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.820;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:66,104:0.61:170
chr3	141535608	rs33928105	C	A	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:110,184:0.63:294
chr3	141595606	rs11539490	C	T	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:316,165:0.34:481
chr3	141595883	rs7616510	G	C	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr3	141625999	rs7622417	G	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=0.208;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr3	141626189	rs3838612	C	CGGTA	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr3	141641015	rs3765155	C	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:104,66:0.39:170
chr3	141644274	rs1131029	G	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	141709083	rs6440055	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=0.851;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:42,22:0.34:64
chr3	141812759	rs9877817	G	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr3	141890107	rs13074187	T	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.13;ReadPosRankSum=1.282;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	141892041	.	T	TA	456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.435;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr3	141904474	rs6785098	C	T	245.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr3	141904977	rs6440065	G	A	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:72,108:0.60:180
chr3	141906446	rs57206350	CA	C	140.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=12.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.39;ReadPosRankSum=0.230;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr3	141923506	rs9830411	C	T	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-0.904;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr3	141932356	rs6440072	G	A	3256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=1.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.119;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:347,193:0.36:540
chr3	142051147	rs4608715	T	C	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr3	142076059	rs3816805	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr3	142078759	rs73238159	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:61,33:0.35:94
chr3	142083776	rs3214978	T	TTA	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr3	142094816	.	GCA	G	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=1.685;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chr3	142116151	rs2291363	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr3	142123841	rs2306700	C	T	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:205,103:0.33:308
chr3	142133218	rs11714528	C	T	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	142145480	rs114962950	A	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr3	142168331	rs1802904	C	T	11094.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr3	142215365	.	AAAGGAAGT	A	2790	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=25;MQ=60.0;NF=2;NR=11;PP=2790;QD=20;SC=AATCTGGTCTAAAGGAAGTAA;SbPval=0.3;Source=Platypus;TC=24;TCF=2;TCR=22;TR=13;WE=142215384;WS=142215355;set=Platypus	GT:AD:AF:DP	1/0:11,13:0.54:24
chr3	142215367	rs72371423	AGG	A	1161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=1.348;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr3	142215370	rs72272981	AAGTAAC	A	1161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.23;ReadPosRankSum=1.180;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr3	142215376	.	C	A	1105	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=11;NR=11;PP=1105;QD=51.8077823885;SC=AAGGAAGTAACAACACATTGG;SbPval=0.4;Source=Platypus;TC=39;TCF=17;TCR=22;TR=22;WE=142215384;WS=142215355;set=Platypus	GT:AD:AF:DP	1/0:17,22:0.56:39
chr3	142218137	.	CT	C	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=9.794;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.286;QD=7.32;ReadPosRankSum=-1.153;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:20,26:0.57:46
chr3	142241692	rs112116713	G	GA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.113;QD=0.53;ReadPosRankSum=-0.075;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:147,33:0.18:180
chr3	142243089	rs112226233	G	T	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:42,81:0.66:123
chr3	142259691	rs112212979	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr3	142266778	rs76852171	A	T	766.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr3	142268372	rs28910272	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr3	142268612	rs34678750	A	G	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr3	142269075	rs28910271	C	T	5765.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:155,267:0.63:422
chr3	142272098	rs141783863	A	G	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:205,105:0.34:310
chr3	142272275	.	AAC	A	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.939;QD=3.59;ReadPosRankSum=-0.396;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:97,29:0.23:126
chr3	142272314	rs9869842	G	A	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,69:0.63:109
chr3	142275353	rs28910270	C	T	3384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-0.258;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:98,162:0.62:260
chr3	142277398	.	A	AG	1391.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.480;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=26.376;MLEAC=1;MLEAF=0.500;MQ=63.35;MQRankSum=0.546;QD=5.33;ReadPosRankSum=8.120;SOR=2.220;set=HC	GT:AD:AF:DP	0/1:177,84:0.32:261
chr3	142277399	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=25;MQ=63.34;NF=171;NR=56;PP=2962;QD=20;SC=TAAATAAATAAATAGATAGAT;SbPval=0.57;Source=Platypus;TC=392;TCF=292;TCR=100;TR=227;WE=142277421;WS=142277385;set=Platypus	GT:AD:AF:DP	0/1:165,227:0.58:392
chr3	142277399	.	A	ATAG	7212.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DP=446;ExcessHet=3.0103;FS=31.681;MLEAC=1;MLEAF=0.500;MQ=63.31;MQRankSum=1.363;QD=17.09;ReadPosRankSum=8.609;SOR=2.463;set=HC	GT:AD:AF:DP	0/1:169,253:0.60:422
chr3	142277575	rs2227930	A	T	26630.77	.	AC=1;AF=0.500;AN=2;DB;DP=1938;set=Intersection	GT:AD:AF:DP	0/1:706,1224:0.63:1930
chr3	142280108	rs28897765	T	C	5576.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:138,256:0.65:394
chr3	142280990	rs200229507	CTTA	C	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr3	142281298	rs28897764	C	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:71,109:0.61:180
chr3	142281612	rs2227928	A	G	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:111,161:0.59:272
chr3	142281994	rs112718453	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr3	142408606	rs6793735	G	A	913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.686;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:29,44:0.60:73
chr3	142413407	rs6789958	C	T	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:32,81:0.72:113
chr3	142417056	rs78432147	G	T	122.88	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr3	142503605	rs7621642	G	A	6490.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:151,296:0.66:447
chr3	142516826	rs16852615	G	A	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:49,68:0.58:117
chr3	142521224	rs3836385	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.995;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr3	142523349	rs3821647	G	A	4437.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:115,206:0.64:321
chr3	142523555	rs4259003	G	A	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=0.386;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr3	142524858	rs1132030	G	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:65,102:0.61:167
chr3	142537071	rs7772	C	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr3	142548560	rs35692900	A	G	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:93,182:0.66:275
chr3	142567327	rs893883	G	A	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr3	142607487	rs1457684	C	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr3	142607822	.	C	CGCTCACACTGGCAGCAGCGCTG	852.73	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr3	142669479	rs4683440	A	G	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:69,116:0.63:185
chr3	142670467	rs2270767	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr3	142681075	rs146419143	T	C	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:201,87:0.30:288
chr3	142681225	rs150246264	G	A	5181.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:141,235:0.62:376
chr3	142720348	rs766360	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	142730774	rs2124541	T	G	9015.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr3	142752293	rs1449869	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	142757185	rs16852915	T	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	142772377	.	A	AT	29	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5099;HP=13;HapScore=2;MGOF=4;MMLQ=22;MQ=60.0;NF=3;NR=0;PP=29;QD=11.3333333333;SC=GAAGGGGTAGATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=3;WE=142772385;WS=142772367;set=Platypus	GT:AD:AF:DP	0/1:2,3:0.60:5
chr3	142773738	rs10935479	C	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	142895298	.	T	G	1065.77	.	AC=1;AF=0.500;AN=2;DP=209;set=Intersection	GT:AD:AF:DP	0/1:146,61:0.29:207
chr3	142985100	rs1046706	G	T	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr3	142985837	.	A	AT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-1.663;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr3	143513975	rs56969315	A	G	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr3	143515899	rs11718136	A	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr3	143530497	rs72993346	A	G	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.41;ReadPosRankSum=-2.030;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr3	143567207	rs11714060	A	G	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	143704516	rs9847681	C	T	9183.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:197,418:0.68:615
chr3	145788467	rs6710	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	145788803	rs2305274	T	C	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	145790948	rs7639592	A	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	145794776	rs142623177	CTTTA	C	623.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	145795559	rs9874388	A	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	145803138	rs1375583	T	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	145803142	rs1375582	T	A	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	145804524	rs3804668	C	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	145809750	rs3792341	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	145820684	rs3762691	G	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	145824347	rs148118826	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:174,101:0.37:275
chr3	145824478	rs9289716	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	145824504	rs7614409	G	A	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	145828256	rs3842573	G	GT	5012.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	145838895	rs4681297	C	T	14813.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr3	145841294	rs10663012	A	AAAAC	1305.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	145841854	rs6802384	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	145912299	rs1512902	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	145917761	rs1061409	T	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr3	145938528	rs3762686	C	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr3	145938619	rs3762685	T	C	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:57,112:0.66:169
chr3	145938782	rs9850144	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr3	145939691	rs3804648	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	145939755	rs3840204	C	CA	971.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.60;ReadPosRankSum=0.062;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:17,26:0.60:43
chr3	145939776	rs3804647	T	G	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.41;ReadPosRankSum=-0.603;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:19,29:0.60:48
chr3	145940051	rs9821768	A	C	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=0.598;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr3	146167163	.	C	CA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=1.514;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:89,28:0.24:117
chr3	146177594	.	G	GT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-1.038;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr3	146243369	rs2688693	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-0.313;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr3	146246288	rs2738909	A	G	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr3	146251430	rs2738905	A	G	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.56;ReadPosRankSum=0.421;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr3	146251433	rs2587024	T	G	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.60;ReadPosRankSum=1.257;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr3	146303750	rs342902	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	146307339	rs56763997	T	A	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:44,97:0.69:141
chr3	146307635	rs343289	C	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr3	146311589	rs12107668	C	T	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr3	146311937	rs147223969	CA	C	345.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr3	146312917	rs72988655	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.884;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr3	146312941	rs6787813	G	T	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.868;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:20,28:0.58:48
chr3	146313036	rs6787741	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr3	146318000	rs16858584	T	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.808;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-0.092;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,16:0.59:27
chr3	147111779	rs62273364	T	C	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	147111904	rs113382372	C	CCT,CCTCT	526.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.467;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;MQRankSum=0.947;QD=15.49;ReadPosRankSum=-1.273;SOR=0.141;set=HC	GT:AD:AF:DP	1/2:6,13,15:0.38,0.44:34
chr3	147113586	rs73004638	A	T	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	148459988	rs5186	A	C	8386.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr3	148562425	rs9835098	C	G	7330.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:179,327:0.65:506
chr3	148562620	rs9873003	A	G	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=0.276;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:54,82:0.60:136
chr3	148562684	.	C	CA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-1.240;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	148575156	rs2331407	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr3	148575380	rs35811007	C	T	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:71,136:0.66:207
chr3	148575441	rs1356259	C	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=0.207;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:30,52:0.63:82
chr3	148575476	rs3044024	C	CAA	319.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.339;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr3	148597482	rs1032465	T	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	148597612	rs12489516	C	T	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	148603859	rs41267865	C	A	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:218,118:0.35:336
chr3	148714841	rs151126996	TTG	T	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr3	148756825	rs6764352	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	148766666	rs34474865	T	C	6397.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:143,290:0.67:433
chr3	148786108	rs812249	C	T	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=1.260;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:47,73:0.61:120
chr3	148858987	rs10693502	C	CTTTTT	928.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.495;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=9.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.380;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:148,46:0.24:194
chr3	148868292	rs150286093	GC	G	353.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr3	148868361	rs2689232	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr3	148872987	rs6440589	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:85,32:0.27:117
chr3	148877978	rs141023798	C	T	5071.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:136,234:0.63:370
chr3	148879878	rs61615092	A	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr3	148881673	rs3732557	C	T	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.357;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=0.290;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:50,21:0.30:71
chr3	148885077	rs2681092	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr3	148885779	rs11426099	A	AT	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr3	148885851	rs2681096	G	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	148890105	rs113015797	T	TCA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=0.346;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	148896430	rs16861582	A	G	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:202,95:0.32:297
chr3	148897498	rs146148959	TAC	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=6.951;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.001;QD=1.48;ReadPosRankSum=-0.375;SOR=2.322;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr3	148900027	.	T	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=15.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=1.112;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr3	148900030	.	T	G	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=15.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.895;SOR=4.003;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr3	148916235	rs701753	T	A	5609.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	149040024	rs74464774	G	A	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr3	149042910	rs2291602	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr3	149048166	rs75979800	T	C	2191.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:52,100:0.66:152
chr3	149050925	rs1526786	T	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:140,66:0.32:206
chr3	149087404	rs8479	T	C	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.40;ReadPosRankSum=-0.566;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr3	149087714	rs6776940	T	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr3	149093238	rs4771	A	G	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr3	149192851	rs143312618	G	GC	6601.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr3	149193684	rs1802837	T	C	7735.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr3	149216629	rs9799030	C	T	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:208,124:0.37:332
chr3	149220517	rs12636725	C	T	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,60:0.38:157
chr3	149243694	rs9854499	G	C	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=2.131;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:21,43:0.67:64
chr3	149258970	rs5853413	CA	C	730.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	149374551	rs58118645	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=3.087;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	149374572	rs113228569	T	A,TCACA	497.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=8.751;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.18;ReadPosRankSum=1.830;SOR=3.897;set=HC	GT:AD:AF:DP	1/2:1,8,6:0.53,0.40:15
chr3	149374574	rs142250733	T	A	567.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=8.751;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.83;ReadPosRankSum=1.828;SOR=3.897;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr3	149374576	rs145173717	T	A	567.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.751;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.83;ReadPosRankSum=1.569;SOR=3.897;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr3	149374578	rs151019600	T	A	1306.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.751;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.84;ReadPosRankSum=1.569;SOR=3.897;set=HC	GT:AD:AF:DP	1/1:1,31:0.97:32
chr3	149459341	rs7633238	A	G	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	149468530	rs9843784	T	G	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr3	149479301	rs954714	C	T	11282.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr3	149481974	rs4681189	G	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	149485293	rs7610425	T	C	11416.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:1,415:1.00:416
chr3	149488309	rs7630033	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:67,103:0.61:170
chr3	149488442	rs7630153	A	G	7746.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:284,383:0.57:667
chr3	149510262	rs4681554	A	G	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr3	149564075	rs6440641	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	149613232	rs143625944	ATT	A	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=1.162;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	149629884	rs73157016	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.201;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr3	149678534	rs6768054	C	T	11286.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr3	149679148	rs61689176	T	TA	1636.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=12.79;ReadPosRankSum=0.520;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:24,104:0.81:128
chr3	149686366	rs35842204	AAC	A	1017.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.037;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.994;QD=6.57;ReadPosRankSum=2.068;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:77,78:0.50:155
chr3	149686367	rs61268501	AC	A	529.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.926;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.976;QD=3.13;ReadPosRankSum=-1.056;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:114,55:0.33:169
chr3	149700519	rs7630407	T	C	3643.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:286,190:0.40:476
chr3	149701113	rs34404328	CG	C	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr3	150262318	rs1533816	C	T	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:31,49:0.61:80
chr3	150263951	.	A	ACC	12243.73	.	AC=1;AF=0.500;AN=2;DP=558;set=Intersection	GT:AD:AF:DP	0/1:196,330:0.63:526
chr3	150332199	rs1568586	T	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.564;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr3	150377674	rs3765005	C	G	777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=1.785;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr3	150384807	rs6440691	T	G	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,202:1.00:203
chr3	150391810	rs73003074	A	C	6399.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:181,309:0.63:490
chr3	150403749	rs4680107	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr3	150420588	rs10663389	G	GTTAAA	13032.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.05;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr3	150420606	rs9824030	T	G	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=2.733;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:143,131:0.48:274
chr3	150420608	rs9879627	G	T,GT	3470.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=1.430;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=-0.138;SOR=0.551;set=HC	GT:AD:AF:DP	1/2:36,159,61:0.62,0.24:256
chr3	150420676	rs10663390	A	AGTGT	1436.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr3	150420781	rs71676608	CAG	C	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.99;ReadPosRankSum=-0.388;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,19:0.66:29
chr3	150421419	rs17281287	G	A	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:180,100:0.36:280
chr3	150421527	.	C	CTCCTCCTCCTCCTCCACCTCT	1801.73	.	AC=2;AF=1.00;AN=2;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=180.17;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	150603248	rs57919280	G	GAAAAGC	20992.73	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:2,472:1.00:474
chr3	150661842	rs11914988	T	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr3	150690566	rs3796240	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr3	150834015	rs4680158	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr3	150883600	rs2567322	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:89,114:0.56:203
chr3	150910640	rs1231520	G	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr3	151011944	rs12492699	A	C	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr3	151011969	rs1048408	G	A	5075.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	151012497	rs2242353	T	C	16455.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr3	151012896	rs9819885	C	T	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:201,98:0.33:299
chr3	151045661	rs1491980	G	C	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	151046308	rs1466684	G	A	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr3	151054115	rs10513393	G	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.46;ReadPosRankSum=0.967;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr3	151056598	rs6809699	A	C	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	151067730	rs1565574	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	151073033	rs7615865	T	C	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:48,120:0.71:168
chr3	151073937	rs1994730	T	C	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:33,87:0.72:120
chr3	151078216	rs9856118	A	G	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:163,92:0.36:255
chr3	151085578	rs3732764	C	A	3711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-1.732;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:105,173:0.62:278
chr3	151085842	rs3841945	AAAT	A	1075.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.511;QD=10.44;ReadPosRankSum=-0.543;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:71,32:0.31:103
chr3	151090604	rs9855202	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr3	151094995	rs73158000	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:49,31:0.39:80
chr3	151102790	rs375671077	ACT	A	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-0.332;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:234,30:0.11:264
chr3	151105992	rs9289837	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,29:0.32:91
chr3	151112568	rs3732768	G	A	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:77,130:0.63:207
chr3	151143354	rs10653830	T	TTG	2031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.781;QD=26.73;ReadPosRankSum=-2.801;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:12,64:0.84:76
chr3	151143447	rs6440742	G	T	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=25.48;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr3	151154435	rs142016761	A	AAAT	357.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr3	151154666	rs2172250	T	C	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	151155620	rs6781302	G	A	10196.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr3	151158184	rs937126	A	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr3	151158265	rs937125	G	A	4523.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr3	151158502	rs10663807	T	TAG	2306.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	151165678	rs9871952	T	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	151166422	rs6798252	C	T	11091.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr3	151171439	rs7619322	A	C	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr3	151171542	rs7621591	A	G	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	151283646	rs7631281	T	C	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr3	151283691	rs9842591	C	A	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.655;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr3	151463421	rs1972977	G	T	3212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=1.498;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:95,147:0.61:242
chr3	151531894	rs2293004	C	T	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	151542408	rs148745568	AAAAC	A	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	151542737	rs13098550	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	151542749	rs151253803	CTATT	C	1237.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	151545318	rs2410837	A	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	151545321	rs11306821	GT	G	629.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.44;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	151545323	rs62272918	T	G	638.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.92;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	151545601	rs1803155	G	A	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr3	151546041	rs1042201	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	151599393	rs13079080	C	T	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,58:0.73:79
chr3	153839866	rs12493885	G	C	11612.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr3	153839959	rs59508481	CT	TC	19678.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr3	153840502	.	G	C	1910.77	.	AC=1;AF=0.500;AN=2;DP=352;set=Intersection	GT:AD:AF:DP	0/1:239,112:0.32:351
chr3	153847582	rs1626280	T	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	153870511	rs1727956	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	153970704	rs2307750	CTT	C	1804.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=60.51;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	153970796	rs355752	A	G	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	153972500	rs355749	T	C	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr3	153994187	rs140779718	T	A	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr3	153994502	rs355787	T	C	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	154007682	rs355758	G	C	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr3	154010515	rs149798542	AAC	A	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr3	154018887	rs9438	G	C	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr3	154021063	rs355756	G	A	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	154024165	rs355754	T	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	154802920	rs4607069	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.661;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr3	154834379	.	GTA	G	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.579;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:111,30:0.21:141
chr3	154857897	rs10935999	C	T	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr3	154866453	rs1436633	T	C	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr3	154866545	rs1436632	A	C	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr3	154878158	rs35450782	GA	G	2138.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	154890206	rs3816803	G	A	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	154890512	rs11445808	C	CT	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.839;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.257;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,46:0.68:68
chr3	154898407	rs701109	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	155212325	rs3214639	G	GA	2069.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:47,99:0.68:146
chr3	155241593	rs9840061	A	G	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:81,126:0.61:207
chr3	155241740	rs9840234	A	G	11463.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	0/1:327,544:0.62:871
chr3	155460907	rs74886868	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr3	155461457	rs75712386	C	T	4866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=2.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.05;ReadPosRankSum=0.127;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:142,231:0.62:373
chr3	155481609	rs7653384	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:78,40:0.34:118
chr3	155485302	rs358733	C	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr3	155522044	rs63242260	ATAT	A	299.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr3	155523375	rs10563990	GCGCA	G	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr3	155551206	rs7649631	C	T	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:91,56:0.38:147
chr3	155551894	rs422497	A	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr3	155611557	rs6441026	T	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	155628877	rs10936021	T	G	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr3	155637190	rs1356252	A	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr3	155639944	rs137872379	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.583;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-1.793;SOR=2.019;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr3	155639959	rs3772117	A	G	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr3	155652860	rs75672038	C	T	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:303,142:0.32:445
chr3	155654432	rs3772113	T	A	310.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	155836231	rs13093154	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:78,36:0.32:114
chr3	155991348	rs1160221	G	T	13191.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr3	155991410	rs13093003	C	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:139,83:0.37:222
chr3	156175109	rs34093583	C	CTT	2356.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,62:0.54:114
chr3	156175167	rs2293194	GG	AA	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;JOINED;set=Intersection	GT:AD:AF:DP	0/1:79,116:0.59:195
chr3	156234268	rs4295133	A	G	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr3	156249214	rs2280031	T	C	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.317;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:136,61:0.31:197
chr3	156261110	rs1983206	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=1.204;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr3	156262232	rs6792998	C	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;MQ=59.84;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr3	156266642	rs6809188	C	T	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	156395329	rs345986	G	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr3	156399180	rs3851992	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr3	156411732	rs193197	A	G	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr3	156413615	rs10631452	C	CTT	1298.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=8.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.55;ReadPosRankSum=0.766;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:11,59:0.84:70
chr3	156421525	rs34277251	G	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr3	156431750	rs61733487	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	156544584	rs344071	C	T	10541.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr3	156697097	rs6780427	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr3	157004323	rs4680353	A	C	2427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.648;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:91,119:0.57:210
chr3	157082082	rs3833585	C	CAA	1377.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr3	157146005	rs9289983	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	157146307	rs1456099	A	T	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:76,138:0.64:214
chr3	157154861	rs2305619	A	G	5063.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:157,239:0.60:396
chr3	157155314	rs3816527	C	A	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:79,168:0.68:247
chr3	157188045	rs1456113	A	G	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr3	157296325	.	CATAT	CATATATATAT,C	132	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.07;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=14;MMLQ=21;MQ=60.0;NF=0,0;NR=12,12;PP=132,78;QD=11.4166666667;SC=CCAAAAAGTACATATATATAT;SbPval=1.0;Source=Platypus;TC=22;TCF=0;TCR=22;TR=12,12;WE=157296336;WS=157296315;set=Platypus	GT:AF:DP	0/1:0.55:22
chr3	157817517	rs9833383	A	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	157820423	rs4462902	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr3	157822669	rs1915940	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	157841531	rs6789448	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr3	157849957	rs1609526	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	158072776	rs5853823	TA	T	1267.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:4,68:0.94:72
chr3	158300732	rs2566341	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	158306627	rs1075551	A	G	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.513;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:216,119:0.36:335
chr3	158308875	rs2566339	T	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	158310153	rs6771248	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr3	158310391	rs34234841	CAGTT	C	2157.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:49,58:0.54:107
chr3	158310483	rs6780477	G	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	158314810	rs45471897	C	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr3	158318015	rs2639656	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	158320597	rs4875	T	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr3	158320703	rs15967	C	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr3	158362391	rs28372852	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr3	158362441	rs1864507	T	C	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:72,67:0.48:139
chr3	158362526	rs1864506	A	G	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:208,149:0.42:357
chr3	158362588	rs1864505	C	G	2474.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:178,129:0.42:307
chr3	158366900	rs2303909	G	A	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.940;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.461;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr3	158367837	rs56167308	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.361;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.673;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,26:0.37:71
chr3	158369789	rs56362855	T	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-0.410;SOR=2.876;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr3	158369798	rs9810874	A	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.249;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.345;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr3	158372477	rs62286656	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,20:0.28:72
chr3	158372502	rs9884039	T	C	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.063;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-1.863;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr3	158384068	rs7628497	A	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-2.425;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:105,53:0.34:158
chr3	158384920	rs9875895	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr3	158386737	rs1492909	C	T	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	158387487	rs6441215	T	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr3	158388721	rs56093991	C	CAAAGAAA	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.325;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=0.573;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr3	158388780	rs8455	T	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.698;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr3	158390395	rs9841	A	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr3	158399757	rs11436468	A	AT	507.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr3	158407930	rs34920045	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.747;QD=1.38;ReadPosRankSum=-0.976;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:64,23:0.26:87
chr3	158409093	rs145803239	C	CA	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.568;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:99,32:0.24:131
chr3	158409262	rs1047355	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr3	158422506	rs4680457	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr3	158428642	rs2307064	G	A	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.522;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.473;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:307,123:0.29:430
chr3	158431508	rs2279562	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:87,55:0.39:142
chr3	158431702	rs2279561	A	T	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:89,45:0.34:134
chr3	158526942	.	G	GT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.712;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr3	158537415	rs112642724	CT	C	1096.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.169;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.471;QD=11.79;ReadPosRankSum=0.105;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:12,81:0.87:93
chr3	158545209	rs61485884	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.193;QD=2.11;ReadPosRankSum=-0.171;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr3	158970714	rs1020470	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	158991724	rs2621285	A	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr3	159557953	rs13064339	T	C	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=0.149;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,43:0.64:67
chr3	159609989	rs74495285	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-1.489;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:85,30:0.26:115
chr3	159744277	rs2936300	C	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	159744352	rs2279742	C	T	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	159744438	rs2914119	C	T	8918.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	159744440	rs2936301	C	T	8918.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	159976432	rs58665245	G	GA	380.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr3	159995356	rs3737214	A	G	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:41,138:0.77:179
chr3	159997061	rs6778728	T	A	4020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-2.304;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:114,192:0.63:306
chr3	160003677	rs2275151	T	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr3	160021681	rs4680576	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	160130110	rs2305407	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	160134241	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-0.120;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr3	160135428	rs1451760	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	160137363	rs142795307	C	CT	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr3	160138473	.	A	G	721.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr3	160141147	rs4679884	G	T	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	160142618	rs11718121	A	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr3	160148756	rs7631792	C	T	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	160153788	rs150286135	CTT	C	818.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr3	160156951	rs1141023	C	T	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr3	160223032	rs721022	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	160233406	.	C	CT	502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.901;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.715;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:46,41:0.47:87
chr3	160245948	rs1551190	A	G	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	160245980	rs4679890	C	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr3	160283126	rs4621370	A	C	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr3	160395089	.	G	GA	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.356;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:24,32:0.57:56
chr3	160395093	rs1879797	A	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.211;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.601;QD=5.28;ReadPosRankSum=-0.338;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:50,20:0.29:70
chr3	160474540	.	C	CGTGT	1127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=26.23;ReadPosRankSum=0.020;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr3	160679422	rs7616249	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	160679744	rs7629001	A	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	160821929	rs7651087	T	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr3	160821969	rs7617204	A	G	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	160939732	rs148371722	A	AATCCCAAC	4282.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	160939746	.	CTTTTTTTTTTTTTTTTT	C,CT	5440.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=144;set=Intersection	GT:AF:DP	1/1:0.99:144
chr3	160939776	rs28711573	T	A	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr3	160945225	.	A	AT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.44;ReadPosRankSum=1.359;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr3	160955879	rs4350933	G	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	160955882	rs200517975	CTT	C	1107.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.426;QD=33.57;SOR=0.399;set=HC	GT:AD:AF:DP	1/1:1,32:0.97:33
chr3	160964271	rs73026976	G	A	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	160967354	rs4290817	G	A	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	160968726	.	T	C	2137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DP=395;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.519;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:263,131:0.33:394
chr3	160970437	rs6789388	G	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	161064193	rs339101	A	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	161090616	rs2054710	C	T	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	161147239	.	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=49.39;MQRankSum=-2.601;QD=0.90;ReadPosRankSum=-0.654;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:85,9:0.10:94
chr3	161147240	.	G	A	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.582;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-2.777;QD=0.86;ReadPosRankSum=-0.465;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:86,9:0.09:95
chr3	161147247	.	G	A	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=50.88;MQRankSum=-3.145;QD=1.14;ReadPosRankSum=-0.526;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:89,10:0.10:99
chr3	161147275	.	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=4.238;MLEAC=1;MLEAF=0.500;MQ=54.86;MQRankSum=-5.202;QD=0.50;ReadPosRankSum=1.587;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:142,13:0.08:155
chr3	161147279	.	T	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=55.04;MQRankSum=-5.356;QD=0.28;ReadPosRankSum=1.523;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:147,13:0.08:160
chr3	161221705	rs3921595	A	C	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:63,83:0.57:146
chr3	163889075	rs12494921	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr3	163889384	rs10936412	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:79,50:0.39:129
chr3	164059123	rs76722974	G	A	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.666;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:110,55:0.33:165
chr3	164697082	rs73018867	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr3	164699998	rs41273561	C	T	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr3	164700734	rs3762796	C	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr3	164710040	rs1079879	G	A	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=-0.996;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr3	164712036	rs114438312	T	C	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=-1.379;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:39,22:0.36:61
chr3	164714296	rs78437999	C	T	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:61,95:0.61:156
chr3	164714532	rs4855271	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	164716417	rs145246112	C	T	3709.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:99,169:0.63:268
chr3	164724567	rs7618643	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr3	164730804	rs74648160	T	C	1481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.67;ReadPosRankSum=1.504;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:31,70:0.69:101
chr3	164733721	rs2290738	G	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:146,60:0.29:206
chr3	164741534	rs146785675	A	G	4479.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:102,201:0.66:303
chr3	164748665	rs11452619	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.492;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.292;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	164755664	rs57544581	T	C	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:51,86:0.63:137
chr3	164780041	rs114533006	C	T	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	164783260	rs9681508	T	G	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	164793648	rs73880014	C	A	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.163;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:38,43:0.53:81
chr3	164793758	rs9290264	C	A	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	165491280	rs1803274	C	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=2.523;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:86,48:0.36:134
chr3	165495400	rs2686409	G	A	3580.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:55,92:0.63:147
chr3	165495420	rs2686410	G	C	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:75,134:0.64:209
chr3	165496622	rs2686411	A	T	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	165555125	rs1126680	C	T	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.350;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:244,96:0.28:340
chr3	166960278	rs11923256	G	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	167023738	rs13096767	G	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	167034814	rs13068132	T	C	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr3	167035501	rs4580553	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	167051769	rs11923054	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	167068256	rs4619784	T	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr3	167077691	rs4257551	T	A	3216.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.53;ReadPosRankSum=2.231;SOR=0.271;set=HC	GT:AD:AF:DP	1/1:1,125:0.99:126
chr3	167278050	rs142561633	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr3	167351418	rs9845725	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr3	167508062	rs13090836	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr3	167508341	rs140116256	T	C	4355.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:116,205:0.64:321
chr3	167745400	rs74977752	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.700;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:52,24:0.32:76
chr3	167762678	.	CA	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.087;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:71,22:0.24:93
chr3	168269756	rs6771018	A	G	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:59,44:0.43:103
chr3	168269864	rs11321565	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.43;ReadPosRankSum=-0.437;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	168542454	.	TCA	T	403.73	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr3	168818560	rs9857376	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	168819788	rs9290358	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	168825911	rs4955639	T	C	86.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr3	168840571	rs3851380	A	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr3	168840607	rs3851381	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	168862965	.	CACACACACACACAGAG	C	98.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.41;MQRankSum=-0.931;QD=2.82;ReadPosRankSum=0.120;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr3	168862967	rs151149708	CACACACACACAGAG	C	541.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.45;MQRankSum=1.054;QD=16.42;ReadPosRankSum=0.150;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr3	169098861	rs988398	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr3	169539812	rs61738871	C	G	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:254,117:0.32:371
chr3	169539990	rs61754874	G	A	4269.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:413,231:0.36:644
chr3	169540397	rs1920119	T	C	4421.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:458,239:0.34:697
chr3	169540882	rs75794543	C	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.81;ReadPosRankSum=-0.023;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr3	169550759	rs12486767	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:75,43:0.36:118
chr3	169557842	rs16854445	C	T	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:180,69:0.28:249
chr3	169558025	rs3732451	C	T	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:146,80:0.35:226
chr3	169566090	rs9290375	A	G	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.384;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:143,112:0.44:255
chr3	169569374	rs41273579	A	G	1468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.303;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:218,93:0.30:311
chr3	169569432	rs35923425	C	G	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:266,115:0.30:381
chr3	169801658	rs6444895	G	A	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr3	169889331	rs3772186	T	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.203;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.593;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:58,40:0.41:98
chr3	169894680	rs1386333	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-0.253;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr3	169980956	rs10592710	CAA	C,CA	378.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.10;MQRankSum=0.000;QD=17.22;ReadPosRankSum=0.364;SOR=0.368;set=HC	GT:AD:AF:DP	1/2:1,13,8:0.59,0.36:22
chr3	169988286	rs56257047	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.156;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr3	169988364	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.120;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr3	170078232	rs3772173	C	T	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr3	170105233	rs6786374	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr3	170105309	rs77658498	ACTT	A	2359.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:121,67:0.36:188
chr3	170105378	rs6786542	C	T	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr3	170109112	.	C	CT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.193;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr3	170150212	rs114088900	G	A	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:32,57:0.64:89
chr3	170197954	rs989997	T	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr3	170198967	rs1861939	G	A	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	170722922	rs55690653	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr3	170727701	rs369506780	GGT	G	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.55;ReadPosRankSum=0.625;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr3	170736192	rs55851905	G	A	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr3	170797521	rs114275242	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.601;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr3	170801912	rs371989911	TA	T	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=2.182;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:59,55:0.48:114
chr3	170825905	rs6444960	C	G	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	170825920	rs2291900	G	A	1945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=0.727;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:37,88:0.70:125
chr3	170846676	.	CA	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.737;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:53,40:0.43:93
chr3	170857167	rs58404789	G	GCACA,GCACACACACACACA	619.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;set=Intersection	GT:AF:DP	1/2:0.75,0.25:12
chr3	170857240	rs6444965	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr3	170858406	rs2292006	T	G	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	170885097	rs2292005	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr3	170893070	rs12637875	G	A	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.95;ReadPosRankSum=-1.389;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:76,104:0.58:180
chr3	170912469	rs6773641	T	A	2814.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:96,130:0.58:226
chr3	170928797	rs6444972	T	C	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr3	170928820	rs11400262	A	AT	746.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr3	171065010	rs3082367	G	GA	2064.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.114;QD=9.22;ReadPosRankSum=-0.532;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:70,154:0.69:224
chr3	171065031	rs1389047	G	C	7933.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	171844787	rs4894810	A	T	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr3	171969077	rs7652177	C	G	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:74,112:0.60:186
chr3	172016725	rs16845307	A	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:48,89:0.65:137
chr3	172034271	rs9837821	T	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr3	172046695	rs201161345	G	GT	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.469;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:20,33:0.62:53
chr3	172046861	rs2270568	T	C	3444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.912;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:127,164:0.56:291
chr3	172046933	rs6799133	A	G	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:69,109:0.61:178
chr3	172052897	rs71300460	G	GT	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=1.048;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:94,35:0.27:129
chr3	172059121	rs570549	G	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	172060700	rs606797	C	T	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	172064091	rs583550	G	A	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr3	172064335	rs55676402	A	ATTTT	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.45;ReadPosRankSum=1.534;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr3	172162829	rs482204	G	A	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.71;ReadPosRankSum=-0.450;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr3	172162837	rs477251	T	C	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.75;ReadPosRankSum=-0.259;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr3	172165727	rs572169	C	T	7195.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:166,326:0.66:492
chr3	172166033	rs495225	G	A	6870.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:148,312:0.68:460
chr3	172224303	rs1131532	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr3	172224769	rs111284464	GC	G	1307.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,39:0.39:101
chr3	172224771	rs17848019	T	A	1316.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:62,39:0.39:101
chr3	172227199	rs3815496	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=-0.852;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr3	172236440	rs231983	T	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	172240999	rs2270418	T	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,20:0.27:75
chr3	172365619	rs9865941	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:122,68:0.36:190
chr3	172428508	rs7629698	C	T	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	172428782	rs2276805	T	C	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:158,108:0.41:266
chr3	172473484	rs1403088	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.605;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr3	172480174	.	AC	A	30	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=4;MGOF=0;MMLQ=25;MQ=60.0;NF=1;NR=0;PP=30;QD=79.0308998699;SC=TTTAAGTTAAACTGGTTTTGG;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=1;WE=172480182;WS=172480170;set=Platypus	GT:AD:AF:DP	0/1:4,1:0.20:5
chr3	172520818	rs7644191	G	C	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr3	172534428	rs10936738	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,14:0.24:58
chr3	172537850	rs35236458	T	G	724.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr3	172634025	rs141570329	T	TTG	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.616;QD=1.61;ReadPosRankSum=0.708;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr3	173322248	rs3844523	T	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	173323508	rs10513714	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr3	173507744	rs2046722	T	C	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:104,71:0.41:175
chr3	173518043	.	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=1.188;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:144,27:0.16:171
chr3	174581888	rs6445184	T	C	8076.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr3	174935828	rs34537026	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.223;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr3	174951756	rs4371530	T	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:45,86:0.66:131
chr3	174974177	rs13072102	C	G	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,32:0.71:45
chr3	175165079	rs6802937	C	T	11975.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr3	175165201	rs2161041	T	G	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	175189406	rs35213579	CT	C	5342.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	175189417	rs79264590	G	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	175189447	rs9290555	G	A	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr3	175205148	rs7646041	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr3	175293752	rs62285573	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr3	175298953	rs62284484	G	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.44;ReadPosRankSum=-0.221;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr3	175345143	rs9866564	C	G	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.226;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr3	175473047	rs9826737	T	C	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	176765253	rs1201300	G	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	176771833	rs138539758	CGTGT	C,CGT	1049.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.808;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.364;QD=26.92;ReadPosRankSum=-1.211;SOR=1.819;set=HC	GT:AD:AF:DP	1/2:2,22,15:0.56,0.38:39
chr3	178542417	rs9857119	A	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr3	178545952	rs35616186	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.306;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.035;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:78,21:0.21:99
chr3	178546026	rs9831934	T	C	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.187;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:165,60:0.27:225
chr3	178560581	rs6443583	A	C	2010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.913;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:166,105:0.39:271
chr3	178785549	rs6772028	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr3	178921639	rs2699895	C	A	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr3	178922274	rs2699896	C	A	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	178922430	rs3729679	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	178927645	rs3729681	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr3	178936094	rs121913286	C	A	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:67,60:0.47:127
chr3	178939018	rs3729689	T	C	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr3	178942431	rs2699889	C	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	178968634	rs7645550	C	T	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr3	178984575	rs7612684	A	G	2894.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr3	179051472	rs35983049	A	G	12948.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr3	179083024	.	A	AT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.697;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr3	179092989	rs9865666	C	T	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	179096006	rs35435588	C	CA	610.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=-0.389;SOR=0.671;set=HC	GT:AD:AF:DP	1/1:5,38:0.88:43
chr3	179096508	rs7637065	C	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr3	179103342	rs200984893	C	CT	265.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.336;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.516;QD=16.61;ReadPosRankSum=1.359;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr3	179109735	rs2287209	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr3	179137273	rs1362650	A	G	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr3	179288086	rs12632721	C	T	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr3	179291308	rs71907893	CT	C,TT	3068.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.962;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.64;MQRankSum=0.430;QD=21.61;ReadPosRankSum=-0.511;SOR=1.897;set=HC	GT:AD:AF:DP	1/2:2,98,42:0.69,0.30:142
chr3	179291309	rs6443658	T	C	267.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=5.917;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=-1.863;QD=1.54;ReadPosRankSum=1.805;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:134,40:0.23:174
chr3	179294352	rs2292907	C	A	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:81,142:0.64:223
chr3	179298584	rs138102554	CT	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.913;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:21,25:0.54:46
chr3	179298999	rs1132429	C	T	9927.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr3	179304255	rs9818068	G	A	1216.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.30;ReadPosRankSum=-0.789;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:6,37:0.86:43
chr3	179304266	rs12635617	A	G	864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.17;ReadPosRankSum=1.049;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:17,40:0.70:57
chr3	179304514	rs61086485	G	A	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:6,34:0.85:40
chr3	179305626	rs79000506	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr3	179305653	rs73883565	A	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.399;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr3	179305654	rs6443659	A	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.64;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	179306775	rs10513762	C	T	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:36,47:0.57:83
chr3	179320310	rs3732998	A	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	179320383	.	GGGC	G	157.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr3	179322385	rs2339844	A	C	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr3	179325566	rs113527645	G	GCTGT	6836.73	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:84,170:0.67:254
chr3	179325722	rs58728627	A	G	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr3	179371154	rs2276803	C	T	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:110,201:0.65:311
chr3	179448066	rs11309768	AT	A	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.640;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.238;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.181;QD=4.35;ReadPosRankSum=-0.656;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:43,28:0.39:71
chr3	179448383	rs3213761	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr3	179463076	rs58527921	A	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.661;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=16.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.246;SOR=2.555;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr3	179463081	rs59131484	G	A	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.578;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=17.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.352;SOR=2.393;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr3	179469995	rs2239639	A	G	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr3	179472674	rs2287240	C	T	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=-0.355;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:234,131:0.36:365
chr3	179481738	.	CA	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=1.775;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:43,30:0.41:73
chr3	179481971	rs71917525	CTG	C	988.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr3	179592053	rs1609981	G	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr3	179592240	rs2339914	C	T	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr3	179593072	rs55664665	T	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	179593352	rs2302743	C	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	179597979	rs13067789	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr3	179689173	rs3774255	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr3	180322248	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-1.541;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr3	180328027	rs34873940	C	G	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:96,208:0.68:304
chr3	180334719	rs11914833	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr3	180362088	rs73051767	T	C	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr3	180365956	rs6769457	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr3	180366067	rs2338436	T	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr3	180630565	rs1805579	T	C	3728.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:99,175:0.64:274
chr3	180633485	rs1805564	G	A	4212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.26;ReadPosRankSum=-1.274;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:84,192:0.70:276
chr3	180679156	rs7428473	G	A	204.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	180688997	rs11368900	C	CA	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	180693215	rs34318725	G	GT	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=-0.644;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:15,29:0.66:44
chr3	182546017	rs9814205	C	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.411;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr3	182575631	rs661774	G	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr3	182576923	rs645597	T	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.686;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr3	182590354	rs771156	C	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr3	182598863	rs796406	A	G	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr3	182623765	rs6768094	G	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr3	182631792	rs11925959	C	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:80,31:0.28:111
chr3	182681740	rs4859146	C	T	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr3	182681853	rs4859147	T	C	1386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-0.203;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:34,69:0.67:103
chr3	182735182	rs6786878	C	A	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	182755209	rs2270968	T	G	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr3	182757084	rs2270967	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr3	182790249	rs7622479	G	A	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr3	182804385	rs6806083	G	A	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	182810144	rs3732604	T	G	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr3	182817328	rs937652	C	G	22798.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr3	182853670	rs482912	T	C	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr3	182858287	rs522235	C	T	4989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.856;QD=11.91;ReadPosRankSum=-1.972;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:176,243:0.58:419
chr3	182858461	rs831256	A	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:36,55:0.60:91
chr3	182870082	rs682396	G	A	402.84	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr3	182870436	rs514636	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr3	182871962	rs653316	C	T	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr3	182880629	rs602762	A	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chr3	182913092	rs577136	T	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr3	182925404	rs6804951	T	C	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	182946002	rs6803121	A	G	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	182987515	rs3811732	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr3	183027542	rs7639705	T	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:253,108:0.30:361
chr3	183028303	rs57067370	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr3	183028331	rs56662557	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.628;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:26,20:0.43:46
chr3	183028450	rs60284418	CA	C	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,54:0.41:131
chr3	183028600	rs1105132	A	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr3	183029331	rs3732595	C	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,34:0.34:99
chr3	183211906	rs1520101	A	G	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:273,118:0.30:391
chr3	183212026	rs2256061	C	T	1798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=0.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.027;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:238,111:0.32:349
chr3	183226114	rs73188786	G	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:239,108:0.31:347
chr3	183439972	rs3841649	A	AG	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;MQ=60.24;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr3	183476685	rs262993	G	A	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:282,122:0.30:404
chr3	183480108	rs3830564	ATGT	A	362.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr3	183491340	rs262961	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr3	183491720	rs262960	T	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr3	183493743	rs146705467	CGGA	C	1611.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr3	183493991	rs2606220	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr3	183510782	rs263022	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr3	183521133	rs263042	A	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-2.539;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:52,29:0.36:81
chr3	183524193	rs263034	T	C	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:119,60:0.34:179
chr3	183524349	rs263033	C	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr3	183524379	rs263032	A	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr3	183524948	rs263031	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr3	183528442	rs263024	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,39:0.33:118
chr3	183535094	rs2582091	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr3	183535763	rs897604	A	G	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:92,60:0.39:152
chr3	183536063	rs894000	T	C	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	183543291	rs263006	G	A	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-1.717;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr3	183558402	rs3732581	C	G	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.738;QD=5.96;ReadPosRankSum=-0.537;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:112,63:0.36:175
chr3	183560195	rs13091	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.276;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr3	183560292	rs7652031	A	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.724;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:91,35:0.28:126
chr3	183562276	rs3811725	A	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr3	183604723	rs1829515	A	G	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:123,76:0.38:199
chr3	183604801	rs4420923	G	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.287;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:47,26:0.36:73
chr3	183750907	.	AT	A	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=1.055;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr3	183754029	rs6792482	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr3	183754278	rs73183412	C	G	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=1.670;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:104,34:0.25:138
chr3	183754294	rs6443930	G	C	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.836;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:110,34:0.24:144
chr3	183755822	rs1000952	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=7.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.880;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:81,50:0.38:131
chr3	183756426	rs6799766	T	C	2857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-13.757;QD=6.63;ReadPosRankSum=1.405;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:273,158:0.37:431
chr3	183756702	rs6789754	G	A	4270.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:495,246:0.33:741
chr3	183756742	rs55674402	C	T	5013.77	.	AC=1;AF=0.500;AN=2;DB;DP=915;set=Intersection	GT:AD:AF:DP	0/1:622,290:0.32:912
chr3	183756780	rs6765152	A	C	4487.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:522,257:0.33:779
chr3	183756808	rs6789882	G	A	3670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=4.661;QD=6.09;ReadPosRankSum=-0.205;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:398,205:0.34:603
chr3	183756836	rs11274156	A	AT	4506.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.758;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=4.755;QD=11.83;ReadPosRankSum=1.820;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:254,127:0.33:381
chr3	183756837	rs66883074	G	GTCAGTCCAAATT	4507.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=4.755;QD=11.83;ReadPosRankSum=1.522;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:254,127:0.33:381
chr3	183818416	rs7627615	G	A	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:238,125:0.34:363
chr3	183819155	rs7432211	T	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:89,49:0.36:138
chr3	183822504	rs66667882	CAAAA	C	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.050;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr3	183823576	rs4912524	T	C	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr3	183823863	rs150341032	G	GAAGA	1467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.708;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=8.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.562;SOR=1.446;set=HC	GT:AD:AF:DP	0/1:128,44:0.26:172
chr3	183856549	rs6787322	A	G	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.916;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:53,24:0.31:77
chr3	183857809	.	CA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.013;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr3	183861243	rs843358	A	G	7870.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:206,377:0.65:583
chr3	183861750	rs843357	A	C	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	183884550	rs73185720	T	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:143,84:0.37:227
chr3	183884895	rs1709638	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:78,78:0.50:156
chr3	183894637	rs2231213	A	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr3	183896641	rs2231216	T	C	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr3	183899832	rs8478	C	T	1421.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:175,84:0.32:259
chr3	183900680	rs843366	G	C	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:61,93:0.60:154
chr3	183900729	rs843365	T	C	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr3	183900836	rs843364	G	A	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	183901281	rs2231224	G	A	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.762;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:98,44:0.31:142
chr3	183903935	rs16833781	C	CG	1717.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.753;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=74.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=2.774;SOR=5.807;set=HC	GT:AD:AF:DP	0/1:92,74:0.45:166
chr3	183903937	rs60293594	G	GC	2077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.019;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=43.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-1.544;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:84,92:0.52:176
chr3	183904226	rs56351888	C	T	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=1.691;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:50,35:0.41:85
chr3	183904232	rs1709624	T	A	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr3	183904520	rs55940723	T	C	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:132,91:0.41:223
chr3	183905103	rs2942056	G	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:12,44:0.79:56
chr3	183906515	rs843345	T	C	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr3	183907032	rs843344	G	C	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr3	183908761	rs7614381	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr3	183909143	rs28673709	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr3	183948663	rs1687225	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr3	183951135	rs729377	C	T	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:323,180:0.36:503
chr3	183951431	rs902417	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr3	183952773	rs9853525	C	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:66,47:0.42:113
chr3	183953972	rs1709657	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:57,51:0.47:108
chr3	183955109	rs843334	C	T	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:261,162:0.38:423
chr3	183957095	rs843333	A	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr3	183957467	rs843332	G	T	2353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.033;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:346,140:0.29:486
chr3	183959508	rs28606531	A	C	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:100,59:0.37:159
chr3	183959961	rs2668195	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr3	183960252	rs706584	A	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr3	183975365	rs7633387	C	T	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	183976108	rs902415	T	C	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:159,76:0.32:235
chr3	183976241	rs6767237	A	G	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:334,209:0.38:543
chr3	183978846	rs843352	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr3	183994536	rs843371	A	G	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:129,77:0.37:206
chr3	183996213	rs843372	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,35:0.42:84
chr3	184010048	rs3914188	G	C	2651.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:268,143:0.35:411
chr3	184017841	rs144161168	G	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:38,28:0.42:66
chr3	184020100	rs71185698	C	CA	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr3	184033408	rs73187631	A	T	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:158,89:0.36:247
chr3	184037533	rs13319149	A	G	9511.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr3	184039666	rs2178403	A	G	3455.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:275,175:0.39:450
chr3	184045799	rs939317	A	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:149,74:0.33:223
chr3	184046355	rs1879244	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:88,47:0.35:135
chr3	184046470	rs2230571	C	T	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-1.715;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:130,90:0.41:220
chr3	184052549	rs376080760	C	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:393,168:0.30:561
chr3	184062776	rs9839000	A	G	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=5.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.056;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:155,44:0.22:199
chr3	184070675	rs3749223	A	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:81,43:0.35:124
chr3	184071017	rs41266265	G	A	5696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.688;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:323,160:0.33:483
chr3	184071017	.	GTT	ATC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=1;MGOF=5;MMLQ=26;MQ=60.0;NF=71;NR=74;PP=2944;QD=20;SC=TTTAGGAAGCGTTTGTGGCTT;SbPval=0.51;Source=Platypus;TC=457;TCF=218;TCR=239;TR=145;WE=184071027;WS=184071007;set=Platypus	GT:AD:AF:DP	1/0:312,145:0.32:457
chr3	184071019	rs11920716	T	C	5696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=-1.251;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:316,160:0.34:476
chr3	184071063	rs9820367	G	C	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:235,115:0.33:350
chr3	184072459	rs73189624	G	A	2504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=27.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=3.507;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:112,132:0.54:244
chr3	184075958	rs41266271	C	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:176,110:0.38:286
chr3	184090242	rs78565404	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr3	184090266	rs6141	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr3	184144585	rs62287529	A	G	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:356,158:0.31:514
chr3	184157142	rs4371544	C	G	2527.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:69,116:0.63:185
chr3	184293564	rs7640497	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:73,26:0.26:99
chr3	184293610	rs9823034	T	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:155,67:0.30:222
chr3	184293769	rs7652597	T	C	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:400,198:0.33:598
chr3	184295008	rs7644069	C	A	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:93,53:0.36:146
chr3	184295828	rs4072650	C	A	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:237,126:0.35:363
chr3	184295921	rs4072651	C	T	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=1.316;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:77,34:0.31:111
chr3	184295921	.	CCA	TCG	1019	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=4;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=8;NR=21;PP=1019;QD=36.9816508573;SC=CCTCCTGGGGCCAGCCGTTGC;SbPval=0.77;Source=Platypus;TC=104;TCF=35;TCR=69;TR=29;WE=184295931;WS=184295911;set=Platypus	GT:AD:AF:DP	0/1:75,29:0.28:104
chr3	184295923	rs4072652	A	G	1134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=2.008;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:76,32:0.30:108
chr3	184299068	rs9881589	G	A	4670.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:490,252:0.34:742
chr3	184299167	rs1138510	T	C	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:286,143:0.33:429
chr3	184299414	rs2230596	C	T	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:163,90:0.36:253
chr3	184402122	rs9290796	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr3	184428903	rs9872799	T	G	12256.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr3	184429133	rs10656187	A	ATCC	8504.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:15,340:0.96:355
chr3	184429414	rs10937187	C	A	9565.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:1,343:1.00:344
chr3	184542693	.	AT	A	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.818;QD=3.01;ReadPosRankSum=0.477;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:51,35:0.41:86
chr3	184556656	rs182746994	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr3	184616504	rs9845800	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr3	184631103	rs9821657	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	184633247	rs4686879	A	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr3	184642587	rs11391596	A	AT	1147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=6.400;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.454;QD=12.21;ReadPosRankSum=0.349;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:21,73:0.78:94
chr3	184647413	rs4643688	T	C	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr3	184654166	rs6444004	A	G	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	184658058	rs142586532	T	TTATA	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr3	184675359	rs4501092	T	C	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr3	184682214	rs6799328	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-2.151;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr3	184684313	rs4470487	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr3	184700356	rs4572747	A	C	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr3	184700426	rs11555405	C	T	3074.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:104,144:0.58:248
chr3	184714014	rs9860814	C	T	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr3	184717703	rs2291737	T	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	184766148	rs3821748	A	G	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:59,86:0.59:145
chr3	184766186	rs3821749	A	C	3013.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:81,130:0.62:211
chr3	184766249	rs6779564	TC	CT	7212.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;JOINED;set=Intersection	GT:AD:AF:DP	0/1:108,182:0.63:290
chr3	184766392	rs3821751	G	A	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:58,97:0.63:155
chr3	184769911	rs2271257	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr3	184935807	rs35531967	A	C	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr3	184971024	.	TA	T	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=3.720;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.564;QD=3.17;ReadPosRankSum=-0.538;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:49,43:0.47:92
chr3	185046909	rs34308085	AT	A	214.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr3	185046975	rs9863304	T	C	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	185146702	rs3732577	C	T	7186.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr3	185155430	rs113427759	C	CTT	1478.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.722;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=27.38;ReadPosRankSum=0.347;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,53:0.98:54
chr3	185155482	rs2304815	A	C	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	185212593	rs6798873	T	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:132,65:0.33:197
chr3	185212872	rs186984071	G	A	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr3	185229464	rs61730237	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:124,88:0.42:212
chr3	185232169	rs1837882	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=5.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.690;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:106,28:0.21:134
chr3	185270121	rs74286273	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr3	185270397	rs79952553	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr3	185300589	rs17289918	T	C	6798.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:153,319:0.68:472
chr3	185304018	rs17523471	T	C	4301.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:88,194:0.69:282
chr3	185307879	rs11924016	A	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.244;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr3	185308069	rs11916386	G	T	346.31	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr3	185316123	rs74466592	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,52:0.72:72
chr3	185318804	rs13100034	G	A	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr3	185330303	rs73175548	C	T	429.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr3	185330304	rs62877061	TTGA	T	1633.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr3	185331165	rs6762208	C	A	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr3	185335156	rs34765114	T	A	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr3	185335162	rs113404329	GT	G	1295.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;MQ=60.17;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr3	185341970	rs1823238	G	A	5179.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:128,238:0.65:366
chr3	185341987	rs5855069	CT	C	3076.73	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:88,177:0.67:265
chr3	185347363	rs62929960	CAA	C	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=1.957;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr3	185347459	rs6774871	A	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:66,106:0.62:172
chr3	185431283	rs17826758	A	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:143,64:0.31:207
chr3	185635685	rs16860328	A	G	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	185655454	rs1862904	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	185798728	rs113586704	A	G	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:34,38:0.53:72
chr3	185802071	.	TAAA	T	524.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.883;QD=12.20;ReadPosRankSum=-0.834;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr3	185879296	rs13073156	T	C	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr3	185882643	rs4686741	C	G	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:49,105:0.68:154
chr3	185905876	rs13087397	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr3	185960192	rs6799929	A	G	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	185960414	rs12489063	G	A	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:149,80:0.35:229
chr3	185975470	rs372307284	CTT	C	569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=0.040;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr3	185982955	rs3815620	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr3	185982972	rs3815619	T	C	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr3	185990096	rs2193587	C	T	7375.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr3	186006566	rs710443	T	C	3697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-0.149;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:297,200:0.40:497
chr3	186006618	rs1004588	G	C	5257.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:149,238:0.61:387
chr3	186015283	rs3819860	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr3	186015303	rs3819859	A	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:59,28:0.32:87
chr3	186015315	rs3819858	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.280;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.403;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:58,25:0.30:83
chr3	186015438	rs3819857	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr3	186276393	rs9854418	C	T	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.107;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:25,53:0.68:78
chr3	186287777	rs2889755	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	186288565	rs3806714	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr3	186293820	rs2280390	T	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	186295417	rs11386781	A	AT	776.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=0.437;SOR=0.636;set=HC	GT:AD:AF:DP	1/1:6,46:0.88:52
chr3	186302391	rs140269415	A	ATTGTGTGTGTGTGT,ATTGTGTGTGTGTGTGTGTGT	2865.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=87;set=Intersection	GT:AF:DP	1/1:1.00:69
chr3	186330745	rs112673334	G	GT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=0.684;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:202,44:0.18:246
chr3	186336176	rs2070635	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr3	186337713	rs4917	T	C	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-1.902;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:192,102:0.35:294
chr3	186337827	rs2518136	T	C	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-1.345;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:85,55:0.39:140
chr3	186338382	rs4918	G	C	2380.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:172,118:0.41:290
chr3	186338425	rs1071592	A	C	3892.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:306,205:0.40:511
chr3	186358768	rs66965282	A	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,30:0.34:87
chr3	186360409	rs3733159	T	G	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=0.170;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr3	186370333	rs1131364	G	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr3	186386664	rs5855108	T	TA	827.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr3	186390627	rs9898	C	T	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:226,109:0.33:335
chr3	186393073	rs370566711	GGT	G	1906.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.72;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr3	186393097	rs7428891	T	A	856.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:5,32:0.86:37
chr3	186395113	rs2228243	A	G	6110.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	0/1:617,345:0.36:962
chr3	186395180	rs7629680	T	C	40355.77	.	AC=2;AF=1.00;AN=2;DB;DP=1538;set=Intersection	GT:AD:AF:DP	1/1:2,1533:1.00:1535
chr3	186395572	rs1042464	A	T	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:395,189:0.32:584
chr3	186435370	rs1050274	G	A	7613.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr3	186435561	rs13072823	G	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:79,95:0.55:174
chr3	186437944	rs5029980	T	C	5244.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:151,238:0.61:389
chr3	186438037	rs2304452	T	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:72,43:0.37:115
chr3	186442833	rs1656921	G	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr3	186443018	rs1656922	T	C	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.860;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:96,133:0.58:229
chr3	186445186	rs3841557	G	GA	1049.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:98,37:0.27:135
chr3	186445237	rs5030025	A	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chr3	186449582	rs1648698	G	C	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	186501502	rs266720	C	A	1109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.875;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:36,54:0.60:90
chr3	186504148	rs266718	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr3	186509258	.	C	CA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.845;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.568;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr3	186509517	rs187868	G	A	5985.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:204,278:0.58:482
chr3	186510533	rs3917130	C	T	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-0.235;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr3	186519136	rs1648703	A	C	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.236;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=-1.381;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:15,36:0.71:51
chr3	186519141	rs1656941	A	C	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.728;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=-0.442;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr3	186522293	rs113205972	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.577;SOR=1.228;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr3	186522633	rs710450	A	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	186917751	rs6764714	C	G	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:275,182:0.40:457
chr3	186947410	rs850318	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	186947483	rs72549162	C	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr3	186954285	rs710452	A	G	20779.77	.	AC=2;AF=1.00;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	1/1:0,800:1.00:800
chr3	186959281	.	T	C	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=1.298;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:76,52:0.41:128
chr3	186961478	rs710460	A	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	186969371	rs3214401	C	CG	674.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr3	186969634	rs698092	A	G	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	187003495	rs698105	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr3	187009061	.	C	T	2310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=-1.133;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:166,123:0.43:289
chr3	187086081	rs5855133	TCAGA	T	2789.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	187088812	rs3821812	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr3	187088903	rs1533595	C	A	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	187088926	rs1533594	G	A	6887.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr3	187089031	rs1003995	C	A	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	187387896	rs4988513	T	C	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-0.381;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:50,102:0.67:152
chr3	187387911	rs34477564	A	G	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:57,118:0.67:175
chr3	187416253	rs1523468	C	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	187416634	rs1973791	C	A	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr3	187416719	rs11707167	T	C	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr3	187419661	rs113681515	G	GCCTGCC	4783.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr3	187420445	rs4389470	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	187440506	rs1005099	C	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	187447032	rs1056932	G	A	8345.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr3	187447926	rs1491997	C	T	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	187451609	rs1880101	A	G	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	187451701	rs1880100	T	C	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.99;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr3	187451709	rs1880099	C	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.24;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	187896912	rs13096262	G	A	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:28,56:0.67:84
chr3	187897059	rs13096615	G	A	7231.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:181,329:0.65:510
chr3	187897424	rs4577458	A	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr3	188202550	rs2067078	A	T	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	188202582	rs1559814	G	T	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr3	188242673	.	TTCCTTCCGTCCG	T	1155.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=-0.136;QD=39.85;ReadPosRankSum=-0.303;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr3	188242697	rs369579197	T	G	1165.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;MQRankSum=-0.136;QD=40.20;ReadPosRankSum=0.087;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr3	188242701	rs138209867	T	G	1162.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;MQRankSum=-0.136;QD=40.10;ReadPosRankSum=-0.566;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr3	188327461	rs1059380	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:144,71:0.33:215
chr3	188426256	rs9877192	A	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:103,40:0.28:143
chr3	188478197	.	G	GGTGTGTGTGTGTGT	951.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=43.26;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	188478227	rs9844848	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	188478235	rs9844854	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.25;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	188584186	rs1877547	G	A	3101.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:62,143:0.70:205
chr3	188590358	rs4687001	C	T	4623.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:2,186:0.99:188
chr3	188590446	rs1136644	A	G	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr3	188933213	rs3821734	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr3	188937307	rs112033944	GA	G	617.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.662;QD=10.84;ReadPosRankSum=1.216;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr3	188956787	rs7640523	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr3	188956822	rs16864142	A	G	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.08;ReadPosRankSum=-0.000;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr3	189028046	rs28363884	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.56;ReadPosRankSum=-0.651;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr3	189033292	rs6773831	C	G	2588.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:224,140:0.38:364
chr3	189349247	rs28673064	A	T	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr3	189507490	rs77388546	C	T	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-0.200;SOR=1.530;set=HC	GT:AD:AF:DP	0/1:74,36:0.33:110
chr3	189547652	rs1515491	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	189582241	rs17514215	T	G	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr3	189582249	rs2276792	G	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr3	189585852	rs7653848	C	T	1989.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:43,88:0.67:131
chr3	189587091	rs6789961	A	G	7256.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:169,327:0.66:496
chr3	189587274	rs6790167	A	G	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr3	189590824	rs9840359	G	C	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr3	189590824	.	GG	CA,CG	873	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=18,33;NR=35,65;PP=873,619;QD=17.4805259408;SC=GCATGAGTGAGGGTGACTTTA;SbPval=0.53;Source=Platypus;TC=98;TCF=33;TCR=65;TR=53,98;WE=189590833;WS=189590814;set=Platypus	GT:AF:DP	0/1:0.54:98
chr3	189590825	rs9840360	G	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=0.454;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:43,56:0.57:99
chr3	189604149	rs1554131	T	G	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr3	189604160	rs1345186	T	C	10941.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr3	189625025	rs201745713	CT	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-1.946;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr3	189625218	rs1515488	G	A	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:85,154:0.64:239
chr3	189688569	rs3732920	C	A	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr3	189689904	rs710543	A	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr3	189690816	rs71674435	G	GA,GAA	1020.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.615;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.64;MQRankSum=0.955;QD=15.95;ReadPosRankSum=-0.068;SOR=1.270;set=HC	GT:AD:AF:DP	1/2:9,40,15:0.62,0.23:64
chr3	189690861	rs710545	T	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	189691499	rs1815171	G	A	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	189692565	rs1985690	G	A	5375.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr3	189702200	rs710558	T	C	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr3	189702395	rs11311050	TA	T	1148.74	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:9,69:0.88:78
chr3	189705268	.	TAA	T	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=2.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.798;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:67,17:0.20:84
chr3	189705542	rs3114672	A	G	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr3	189712089	rs1719599	G	A	5147.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;QD=43.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr3	189712089	.	GG	AA	2944	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=25;MQ=60.86;NF=35;NR=60;PP=2944;QD=20;SC=TGAAACAGACGGGAAAAAACA;SbPval=0.52;Source=Platypus;TC=103;TCF=38;TCR=65;TR=95;WE=189712102;WS=189712079;set=Platypus	GT:AD:AF:DP	1/1:8,95:0.92:103
chr3	189712090	rs1719598	G	A	5147.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.85;QD=45.56;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr3	189712094	rs139834656	A	AAAAC,AAAACAAAC	2791.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.89;QD=42.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:0,50,16:0.76,0.24:66
chr3	189713205	rs9821880	T	C	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr3	189713345	rs10645374	G	GT	192.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=0.275;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr3	189837993	rs710596	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr3	190030680	rs9869263	A	G	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:119,183:0.61:302
chr3	190106071	rs368234054	AG	A	4201.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:233,118:0.34:351
chr3	190106074	rs3214506	G	C	4210.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:232,118:0.34:350
chr3	190106242	rs1491994	T	C	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:100,57:0.36:157
chr3	190106332	rs1491993	T	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr3	190157898	rs6767754	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr3	190165800	rs1346016	T	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr3	190282197	rs6764468	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:156,75:0.32:231
chr3	190327020	rs41268633	A	G	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-2.093;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr3	190333162	rs35429399	TG	T	4371.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	190338039	rs11368884	C	CT	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr3	190341241	rs4687160	C	A	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr3	190341292	rs4687161	C	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr3	190345098	rs34908328	GT	G	2021.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.661;QD=16.99;ReadPosRankSum=-0.266;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:11,108:0.91:119
chr3	190347391	rs7611887	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr3	190363429	rs78136844	A	C	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr3	190363594	rs34879831	G	A	4729.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:131,220:0.63:351
chr3	190576702	rs60523033	C	T	4466.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:123,206:0.63:329
chr3	190578566	rs13075089	A	G	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:95,60:0.39:155
chr3	190580150	rs10630111	A	AG	1094.84	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.49;ReadPosRankSum=0.564;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr3	190580151	.	A	G	635	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=31;MMLQ=28;MQ=60.0;NF=26;NR=2;PP=635;QD=23.9204004481;SC=TAATAACAGAAAGAGAGAGAG;SbPval=0.97;Source=Platypus;TC=32;TCF=26;TCR=6;TR=28;WE=190580159;WS=190580147;set=Platypus	GT:AD:AF:DP	1/1:4,28:0.88:32
chr3	190580151	rs371567527	A	AGAG	1247.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.70;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr3	190580209	.	AAG	A	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.769;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:83,20:0.19:103
chr3	190995847	rs3214008	T	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=-1.271;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr3	190999790	rs6444533	A	G	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr3	190999872	rs6444534	G	A	3703.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:113,173:0.60:286
chr3	190999917	rs6788319	C	A	4647.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:145,216:0.60:361
chr3	190999990	rs6444535	C	T	3050.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:86,144:0.63:230
chr3	191047532	rs9847278	A	G	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:61,130:0.68:191
chr3	191074796	.	TA	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.829;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.241;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:42,19:0.31:61
chr3	191074873	rs188384	C	G	1733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=2.131;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:56,82:0.59:138
chr3	191075012	rs1520203	G	T	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr3	191075656	rs13434281	G	A	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,50:0.66:76
chr3	191075902	rs11542549	C	T	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:63,98:0.61:161
chr3	191087546	rs4677632	A	G	1774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.203;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.30;ReadPosRankSum=-0.103;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:21,44:0.68:65
chr3	191087551	rs697905	G	A	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=0.527;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:26,50:0.66:76
chr3	191093053	rs2028572	T	C	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:58,97:0.63:155
chr3	191093175	rs2028574	T	A	4793.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:121,221:0.65:342
chr3	191093310	rs4677728	A	G	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:56,82:0.59:138
chr3	191093384	rs4677729	A	G	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr3	191093434	rs293806	A	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr3	191093475	rs4677730	T	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr3	191097908	rs293812	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr3	191097928	rs34031057	G	GT	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=2.038;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:12,36:0.75:48
chr3	191097966	rs293813	T	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr3	191098121	rs293814	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr3	191098731	rs211043	G	A	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr3	191100448	rs383529	G	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr3	191100561	rs364519	C	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,108:0.56:194
chr3	191107192	rs436393	A	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr3	191107445	rs74519151	C	T	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:35,76:0.68:111
chr3	191178925	rs539897	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	191179193	rs293833	A	G	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr3	191179303	rs176823	C	T	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr3	191888452	rs201475598	GAA	G	2781.73	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:65,118:0.64:183
chr3	192053274	rs4571187	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr3	192125768	rs2249551	A	G	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.025;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:69,35:0.34:104
chr3	192516931	rs35594076	A	C	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:274,175:0.39:449
chr3	192993762	rs13084990	C	A	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr3	192994543	rs2271791	A	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	193016895	rs1878716	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr3	193023255	rs10937578	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr3	193024928	rs10804952	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	193031926	rs2280268	C	T	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr3	193036794	rs6788770	G	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr3	193042776	rs11926955	T	C	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr3	193042964	rs11715170	G	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr3	193044923	rs1387700	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr3	193062906	rs6444706	G	A	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr3	193068800	rs1038719	G	A	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr3	193069125	rs55658952	G	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr3	193071888	rs11300573	CA	C	2711.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:88,168:0.66:256
chr3	193080344	rs12636830	C	T	3073.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:332,172:0.34:504
chr3	193080414	rs6797429	C	G	3692.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:89,161:0.64:250
chr3	193081122	rs12637558	G	T	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.135;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:154,62:0.29:216
chr3	193081206	rs2367605	G	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr3	193081830	rs923496	A	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr3	193081864	rs923495	G	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:85,50:0.37:135
chr3	193081866	rs4386441	T	A	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:50,91:0.65:141
chr3	193090101	rs57458521	A	AGG	2089.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.29;QD=42.65;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	193090255	rs2171848	C	T	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=42.77;SOR=1.428;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr3	193090260	rs6444712	T	C	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=46.03;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr3	193096529	rs4687419	C	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr3	193120359	rs142743757	GA	G	921.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr3	193128900	rs61401139	G	A	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,66:0.61:109
chr3	193129807	rs6763501	G	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr3	193153562	rs1996735	T	C	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:72,48:0.40:120
chr3	193159449	rs12497916	G	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr3	193171979	rs35424709	T	A	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:198,100:0.34:298
chr3	193180400	rs56312820	A	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr3	193182715	rs12696666	T	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr3	193183039	rs7617230	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr3	193183817	rs3796181	A	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:110,49:0.31:159
chr3	193201582	rs9842836	C	A	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr3	193272417	rs9883845	A	G	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr3	193272442	rs10530570	CGTGTGTGTGTGT	C,CGTGTGT	1256.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=48;set=Intersection	GT:AF:DP	1/2:0.30,0.68:44
chr3	193332420	rs145894722	C	CTGTG	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr3	193334991	rs7624750	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr3	193336639	rs3772393	T	C	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.515;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:145,71:0.33:216
chr3	193355074	rs166850	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	193355102	rs10451941	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr3	193361950	.	A	T	1733.77	.	AC=1;AF=0.500;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	0/1:25,73:0.74:98
chr3	193363695	rs34222475	G	A	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr3	193365974	rs9831900	T	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr3	193374964	rs9851685	T	C	867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.746;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:132,56:0.30:188
chr3	193383973	rs10804957	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr3	193384203	rs10937595	T	A	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:170,88:0.34:258
chr3	193386239	rs12494482	C	T	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:508,253:0.33:761
chr3	193854148	.	T	TA	1151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=11.87;ReadPosRankSum=-0.681;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:20,77:0.79:97
chr3	194061906	rs4974538	TG	CA	8067.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	194062565	rs3732476	C	T	11086.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr3	194063153	rs3732474	G	A	10189.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr3	194063300	rs62288099	T	C	9521.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr3	194080336	rs4974533	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:190,106:0.36:296
chr3	194080648	rs9682540	G	A	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:172,107:0.38:279
chr3	194080696	rs9682541	G	A	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.33;ReadPosRankSum=0.140;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:160,117:0.42:277
chr3	194080916	rs13070515	G	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:183,91:0.33:274
chr3	194080983	rs13060627	C	T	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:169,90:0.35:259
chr3	194081089	rs11713861	C	T	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:157,105:0.40:262
chr3	194081179	rs11715737	G	A	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:208,134:0.39:342
chr3	194081392	rs923936	G	A	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:228,149:0.40:377
chr3	194081635	rs923935	T	C	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:197,117:0.37:314
chr3	194118874	rs1223989	T	C	9229.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr3	194124624	.	C	T	97	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=24;MQ=60.0;NF=4;NR=0;PP=97;QD=32.9428031368;SC=AAAACCCTTACTAACTCTAAA;SbPval=1.0;Source=Platypus;TC=14;TCF=11;TCR=3;TR=4;WE=194124632;WS=194124614;set=Platypus	GT:AD:AF:DP	0/1:10,4:0.29:14
chr3	194133121	rs9855721	G	C	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr3	194149700	rs13064289	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.568;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr3	194168500	rs9861816	G	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr3	194176712	rs4974520	C	A	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:57,41:0.42:98
chr3	194180743	rs4974521	G	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.119;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr3	194219775	.	G	GA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.701;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=3.685;QD=0.85;ReadPosRankSum=-0.082;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr3	194309528	rs789837	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	194313832	rs1773184	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.265;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr3	194325006	rs732124	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	194325325	rs708632	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	194331875	rs789993	A	T	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	194337901	rs922282	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.276;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	194344526	rs709011	G	C	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr3	194346544	rs1773191	T	A	10305.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr3	194346553	rs1773190	T	C	10885.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr3	194346803	rs1773189	A	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr3	194349027	rs1318216	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	194349178	rs1563970	C	T	4034.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:87,184:0.68:271
chr3	194353772	rs11273892	C	CCCGCCCGACAG	2020.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr3	194353875	rs1675955	G	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-1.132;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:107,46:0.30:153
chr3	194362721	rs1060827	G	A	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr3	194371496	rs1773206	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr3	194373832	rs1675953	TG	CA	17244.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr3	194379567	rs1675948	A	G	2383.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr3	194379596	rs1705971	C	A	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	194379646	rs11438897	T	TC	8754.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr3	194379905	rs11357453	TA	T	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr3	194381530	rs1705969	A	G	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr3	194381680	rs1675947	G	A	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr3	194381716	rs1705968	G	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr3	194381742	rs1705967	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr3	194386136	rs1705966	C	T	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr3	194386881	rs1675944	A	G	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr3	194387300	rs1675943	C	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:130,63:0.33:193
chr3	194390617	rs1773230	G	C	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr3	194390713	rs1675926	C	A	10584.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr3	194390869	rs36028600	G	GA	4112.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr3	194392683	rs1773231	A	C	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr3	194408704	rs4677673	A	G	8709.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr3	194790422	rs3796158	G	A	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr3	194790434	rs3796159	C	G	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:124,86:0.41:210
chr3	194842877	rs58370605	A	G	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:225,163:0.42:388
chr3	194877126	rs59556963	G	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr3	194896233	rs201558663	T	TGA	1319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=9.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=-1.988;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:100,38:0.28:138
chr3	194896236	rs71988963	TGA	T	1433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.057;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=14.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=-1.486;SOR=1.917;set=HC	GT:AD:AF:DP	0/1:111,41:0.27:152
chr3	194896240	rs200404095	T	TGTG	1455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=16.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-1.887;SOR=2.016;set=HC	GT:AD:AF:DP	0/1:111,43:0.28:154
chr3	194928138	rs12495970	A	C	1383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.502;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:237,92:0.28:329
chr3	195009994	rs115363377	C	T	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:92,158:0.63:250
chr3	195018019	rs112771083	C	CAA	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr3	195133475	rs10645683	T	TAAC	2797.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr3	195245771	rs17847363	C	T	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:36,95:0.73:131
chr3	195245805	rs17847362	G	A	5634.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr3	195295661	rs7659	C	T	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr3	195295708	rs142189206	G	GGGGT,GGGGGT	1617.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/2:0.76,0.24:34
chr3	195300676	rs1568566	A	G	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr3	195306055	rs4677691	A	G	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr3	195345828	rs148520845	AG	GA	19435.77	.	AC=1;AF=0.500;AN=2;DB;DP=1174;JOINED;set=Intersection	GT:AD:AF:DP	0/1:660,512:0.44:1172
chr3	195345953	rs145174488	C	T	15234.77	.	AC=1;AF=0.500;AN=2;DB;DP=1380;set=Intersection	GT:AD:AF:DP	0/1:619,757:0.55:1376
chr3	195346352	rs201553387	C	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.172;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=32.919;MLEAC=1;MLEAF=0.500;MQ=43.84;MQRankSum=-5.835;QD=3.44;ReadPosRankSum=0.307;SOR=3.353;set=HC	GT:AD:AF:DP	0/1:142,36:0.20:178
chr3	195346477	rs7631117	C	T	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.160;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=1.286;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=1.510;QD=4.24;ReadPosRankSum=0.409;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:383,138:0.26:521
chr3	195346533	.	A	G	6375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.787;ClippingRankSum=0.000;DP=848;ExcessHet=3.0103;FS=43.417;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-14.704;QD=7.52;ReadPosRankSum=-7.014;SOR=3.254;set=HC	GT:AD:AF:DP	0/1:664,184:0.22:848
chr3	195346535	.	CA	AG	6538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.456;ClippingRankSum=0.000;DP=878;ExcessHet=3.0103;FS=38.504;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-13.908;QD=7.45;ReadPosRankSum=-6.532;SOR=2.801;set=HC	GT:AD:AF:DP	0/1:677,201:0.23:878
chr3	195346676	rs182819523	C	T	14765.77	.	AC=1;AF=0.500;AN=2;DB;DP=2220;set=Intersection	GT:AD:AF:DP	0/1:1410,807:0.36:2217
chr3	195346861	rs116014205	T	C	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:241,143:0.37:384
chr3	195346900	rs114465812	T	C	2253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.901;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=22.577;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-13.024;QD=4.69;ReadPosRankSum=-5.112;SOR=2.392;set=HC	GT:AD:AF:DP	0/1:404,77:0.16:481
chr3	195346906	rs62286967	C	T	2640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.339;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=26.606;MLEAC=1;MLEAF=0.500;MQ=55.85;MQRankSum=-10.507;QD=5.18;ReadPosRankSum=-6.205;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:405,105:0.21:510
chr3	195346945	rs116044101	C	A	6764.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:363,326:0.47:689
chr3	195377629	rs138964810	C	T	10747.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:186,297:0.61:483
chr3	195377651	rs139047772	T	C	10083.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:162,260:0.62:422
chr3	195395379	rs73216381	T	G	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:211,168:0.44:379
chr3	195395533	rs9847770	C	T	3598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.043;ClippingRankSum=0.000;DB;DP=762;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=49.97;MQRankSum=1.356;QD=4.73;ReadPosRankSum=0.223;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:542,219:0.29:761
chr3	195395549	rs58717446	C	CAT	15887.73	.	AC=1;AF=0.500;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	0/1:250,409:0.62:659
chr3	195395564	rs78351752	C	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.54;MQRankSum=-6.524;QD=0.69;ReadPosRankSum=-1.547;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:460,79:0.15:539
chr3	195395637	rs112256319	C	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=8.096;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=1.380;QD=5.16;ReadPosRankSum=0.064;SOR=1.713;set=HC	GT:AD:AF:DP	0/1:82,31:0.27:113
chr3	195398105	rs201604773	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=14.474;MLEAC=1;MLEAF=0.500;MQ=43.27;MQRankSum=0.613;QD=7.07;ReadPosRankSum=-1.521;SOR=0.102;set=HC	GT:AD:AF:DP	0/1:58,28:0.33:86
chr3	195399395	rs201046867	C	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=23.567;MLEAC=1;MLEAF=0.500;MQ=40.98;MQRankSum=-1.189;QD=2.85;ReadPosRankSum=1.151;SOR=3.656;set=HC	GT:AD:AF:DP	0/1:74,16:0.18:90
chr3	195399505	rs2280577	C	T	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=51.18;MQRankSum=0.808;QD=2.95;ReadPosRankSum=2.275;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:249,68:0.21:317
chr3	195399599	rs2461859	T	C	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=566;ExcessHet=3.0103;FS=7.291;MLEAC=1;MLEAF=0.500;MQ=57.13;MQRankSum=-9.934;QD=1.58;ReadPosRankSum=3.432;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:465,98:0.17:563
chr3	195399620	rs9840981	C	G	1312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=5.355;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-12.383;QD=2.67;ReadPosRankSum=5.776;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:389,103:0.21:492
chr3	195399678	rs9874761	G	T	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:104,103:0.50:207
chr3	195400822	rs56170658	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.683;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=18.218;MLEAC=1;MLEAF=0.500;MQ=52.59;MQRankSum=-7.630;QD=0.42;ReadPosRankSum=1.410;SOR=2.426;set=HC	GT:AD:AF:DP	0/1:569,49:0.08:618
chr3	195400841	rs7615369	C	A	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=10.685;MLEAC=1;MLEAF=0.500;MQ=51.79;MQRankSum=-3.995;QD=2.37;ReadPosRankSum=-0.977;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:469,64:0.12:533
chr3	195400848	rs7635190	G	A	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.674;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=10.018;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-2.797;QD=2.83;ReadPosRankSum=-1.050;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:440,70:0.14:510
chr3	195400918	rs55992531	C	CT	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.684;MLEAC=1;MLEAF=0.500;MQ=54.13;MQRankSum=1.157;QD=1.72;ReadPosRankSum=1.942;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:160,42:0.21:202
chr3	195412876	rs11185503	T	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr3	195415423	rs150892404	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.68;MQRankSum=-0.926;QD=12.64;ReadPosRankSum=-1.279;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr3	195426305	rs9860655	T	C	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=-1.401;QD=1.63;ReadPosRankSum=-1.634;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:251,48:0.16:299
chr3	195426490	rs3107775	A	G	5591.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:261,265:0.50:526
chr3	195447775	rs7620138	A	G	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr3	195447795	rs147994480	CCCT	C	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr3	195447834	rs11185522	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr3	195447871	rs11185524	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:46,14:0.23:60
chr3	195447886	rs7627924	G	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr3	195451880	rs142096782	AG	GA	33588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.411;ClippingRankSum=0.000;DB;DP=1133;ExcessHet=3.0103;FS=3.721;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.85;MQRankSum=-12.725;QD=29.65;ReadPosRankSum=0.547;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:310,823:0.73:1133
chr3	195452005	rs145612981	C	T	11929.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.267;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.90;MQRankSum=1.673;QD=27.05;ReadPosRankSum=-1.058;SOR=0.480;set=HC	GT:AD:AF:DP	1/1:1,440:1.00:441
chr3	195452535	.	TCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCCCCATCCAGTCATCACCCCGTCACGGGCCTCAGAGAGCAGCGCCTCTTCCGACGGCCC	T	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.72;MQRankSum=0.658;QD=0.28;ReadPosRankSum=-0.075;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:262,41:0.14:303
chr3	195452689	rs141077164	C	T	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=29.924;MLEAC=1;MLEAF=0.500;MQ=45.18;MQRankSum=-0.127;QD=0.37;ReadPosRankSum=0.568;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:260,41:0.14:301
chr3	195452805	rs138659995	T	C	8764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.897;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=8.933;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-0.006;QD=18.07;ReadPosRankSum=-0.855;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:118,367:0.76:485
chr3	195452870	.	G	A	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.364;ClippingRankSum=0.000;DP=713;ExcessHet=3.0103;FS=46.549;MLEAC=1;MLEAF=0.500;MQ=54.67;MQRankSum=-9.381;QD=3.85;ReadPosRankSum=-7.200;SOR=3.886;set=HC	GT:AD:AF:DP	0/1:609,101:0.14:710
chr3	195452872	.	AG	CA	2757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.012;ClippingRankSum=0.000;DP=723;ExcessHet=3.0103;FS=43.670;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.82;MQRankSum=-9.579;QD=3.83;ReadPosRankSum=-7.138;SOR=3.466;set=HC	GT:AD:AF:DP	0/1:610,110:0.15:720
chr3	195452951	rs2688542	G	C	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.891;ClippingRankSum=0.000;DB;DP=1296;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-8.608;QD=0.73;ReadPosRankSum=-3.792;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:1119,172:0.13:1291
chr3	195452987	rs9866681	G	A	10044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.434;ClippingRankSum=0.000;DB;DP=1642;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-17.796;QD=6.14;ReadPosRankSum=-0.738;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:1298,338:0.21:1636
chr3	195452991	rs3828411	C	T	9772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=1659;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-17.051;QD=5.91;ReadPosRankSum=1.448;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:1322,331:0.20:1653
chr3	195453017	rs144288174	GC	G	14813.73	.	AC=1;AF=0.500;AN=2;DB;DP=1610;set=Intersection	GT:AD:AF:DP	0/1:837,737:0.47:1574
chr3	195453064	rs2550233	T	G	18742.77	.	AC=1;AF=0.500;AN=2;DB;DP=1161;set=Intersection	GT:AD:AF:DP	0/1:333,823:0.71:1156
chr3	195453205	rs9870815	G	A	2510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=1240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-3.385;QD=2.03;ReadPosRankSum=-0.461;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:1007,228:0.18:1235
chr3	195453243	rs3828408	C	T	18116.77	.	AC=1;AF=0.500;AN=2;DB;DP=1503;set=Intersection	GT:AD:AF:DP	0/1:999,502:0.33:1501
chr3	195453249	rs3828407	T	C	5730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.850;ClippingRankSum=0.000;DB;DP=1551;ExcessHet=3.0103;FS=6.144;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-10.002;QD=3.70;ReadPosRankSum=-0.766;SOR=1.310;set=HC	GT:AD:AF:DP	0/1:1303,245:0.16:1548
chr3	195453257	rs3828406	G	A	7995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=1607;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-3.279;QD=4.98;ReadPosRankSum=2.628;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:1306,298:0.19:1604
chr3	195453310	rs9758494	G	A	7746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=1805;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-4.947;QD=4.31;ReadPosRankSum=4.537;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:1296,500:0.28:1796
chr3	195453406	rs3210209	G	C	4863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.918;ClippingRankSum=0.000;DB;DP=1335;ExcessHet=3.0103;FS=0.756;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-7.319;QD=3.66;ReadPosRankSum=-1.563;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:1126,203:0.15:1329
chr3	195453412	rs1063306	C	T	4889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=1265;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-7.248;QD=3.88;ReadPosRankSum=-2.671;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:1068,191:0.15:1259
chr3	195453434	rs113099255	G	A	6242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-9.156;QD=6.68;ReadPosRankSum=1.136;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:589,345:0.37:934
chr3	195456478	rs111854338	C	T	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:99,56:0.36:155
chr3	195456561	rs3762739	C	G	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.818;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.480;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:252,62:0.20:314
chr3	195461592	rs1809785	T	G	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.535;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr3	195466662	rs3844569	T	G	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr3	195467837	rs56381108	A	G	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:63,43:0.41:106
chr3	195467853	rs56050330	C	T	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,33:0.38:86
chr3	195475799	rs3205933	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr3	195475989	rs7621695	G	A	5239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.508;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.146;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:266,265:0.50:531
chr3	195476085	rs2688497	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:22,66:0.75:88
chr3	195477713	rs2291654	G	A	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-0.598;QD=28.96;ReadPosRankSum=-0.708;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr3	195477713	.	GCC	ACA	1308	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=9;HapScore=1;MGOF=6;MMLQ=28;MQ=52.28;NF=26;NR=8;PP=1308;QD=40.0431727901;SC=CTGTTTGCCCGCCCCCCGCAG;SbPval=0.5;Source=Platypus;TC=49;TCF=38;TCR=11;TR=34;WE=195477723;WS=195477703;set=Platypus	GT:AD:AF:DP	1/0:15,34:0.69:49
chr3	195477715	rs2291653	C	A	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.38;MQRankSum=-0.863;QD=27.86;ReadPosRankSum=0.234;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr3	195477786	rs6808605	C	T	3242.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:71,143:0.67:214
chr3	195478012	rs2291651	G	C	2016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.598;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=9.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=2.362;SOR=1.940;set=HC	GT:AD:AF:DP	0/1:64,130:0.67:194
chr3	195479226	rs6792437	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr3	195479256	rs2258447	T	C	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	195484244	rs2550270	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:48,52:0.52:100
chr3	195487737	rs2246771	A	G	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,42:0.74:57
chr3	195489009	rs2246901	C	A	1762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.628;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:43,79:0.65:122
chr3	195489067	rs2246980	C	G	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:55,128:0.70:183
chr3	195489669	rs2550263	C	T	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:76,94:0.55:170
chr3	195490284	rs2550261	T	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr3	195490838	rs377595393	ATCCAGAT	AAGAT,A	785.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	0/1:0.57:37
chr3	195490842	rs34858176	AGATG	A	785.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.24;ReadPosRankSum=0.154;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:16,21:0.57:37
chr3	195490846	.	G	A	892	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=4;MGOF=1;MMLQ=23;MQ=60.0;NF=13;NR=2;PP=892;QD=61.7847475031;SC=TTATCCAGATGCCACCTCCCG;SbPval=0.75;Source=Platypus;TC=34;TCF=28;TCR=6;TR=15;WE=195490854;WS=195490828;set=Platypus	GT:AD:AF:DP	1/0:19,15:0.44:34
chr3	195492027	rs11926236	T	C	9273.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr3	195497143	rs2293232	C	T	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.335;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:131,71:0.35:202
chr3	195497174	rs2259102	C	G	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:102,154:0.60:256
chr3	195497743	rs2260685	T	C	3733.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:128,173:0.57:301
chr3	195497809	rs2259153	T	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:46,85:0.65:131
chr3	195501149	rs2259292	C	T	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.749;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:41,80:0.66:121
chr3	195501258	rs2259331	T	C	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr3	195505417	rs2259419	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr3	195505664	rs2688513	G	A	2387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=0.238;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:46,110:0.71:156
chr3	195505788	rs2550253	G	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr3	195505835	rs58500707	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.937;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.254;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-2.161;QD=10.17;ReadPosRankSum=-0.027;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr3	195505838	rs59101491	G	C	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.729;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.254;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-2.161;QD=10.37;ReadPosRankSum=-0.493;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:31,14:0.31:45
chr3	195511993	.	A	G	727	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=1;HapScore=2;MGOF=28;MMLQ=25;MQ=49.82;NF=30;NR=21;PP=727;QD=14.9366904421;SC=ACCTGTGGATACTGAGGAAGT;SbPval=0.73;Source=Platypus;TC=102;TCF=55;TCR=47;TR=51;WE=195512012;WS=195511983;set=Platypus	GT:AD:AF:DP	0/1:51,51:0.50:102
chr3	195512004	.	T	G	2066	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=2;HapScore=2;MGOF=28;MMLQ=21;MQ=51.52;NF=59;NR=54;PP=2066;QD=18.5908956863;SC=CTGAGGAAGTTTCGGTGACAG;SbPval=0.51;Source=Platypus;TC=114;TCF=60;TCR=54;TR=113;WE=195512012;WS=195511983;set=Platypus	GT:AD:AF:DP	1/1:1,113:0.99:114
chr3	195512107	.	T	A	2805	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=1;MGOF=29;MMLQ=21;MQ=59.79;NF=94;NR=76;PP=2805;QD=20;SC=AGCATCGGTGTCATGAAGAGC;SbPval=0.55;Source=Platypus;TC=170;TCF=94;TCR=76;TR=170;WE=195512115;WS=195512097;set=Platypus	GT:AD:AF:DP	1/1:0,170:1.00:170
chr3	195512186	rs202060675	T	C	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:9,145:0.94:154
chr3	195512212	rs75588776	G	T	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-1.436;QD=2.58;ReadPosRankSum=-0.362;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:117,35:0.23:152
chr3	195515414	rs71180964	T	TGGTGACAGGAAGAGGGGTGGCGTGACCTGTGGATTCTGAGGAAGTGTC	844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-1.762;QD=27.25;ReadPosRankSum=2.970;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr3	195515594	rs13095016	C	G	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:48,70:0.59:118
chr3	195515617	rs2641776	G	C	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	195516630	rs3103954	G	T	3638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.904;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-1.219;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:92,173:0.65:265
chr3	195516878	rs2177336	T	C	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:117,158:0.57:275
chr3	195517258	rs1106502	G	A	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:101,150:0.60:251
chr3	195517321	rs1104760	G	A	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:89,170:0.66:259
chr3	195517553	rs882605	A	C	4878.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:126,214:0.63:340
chr3	195517909	rs729593	G	T	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:176,112:0.39:288
chr3	195518112	rs142781032	T	TGTCTCCTGCGTAACA	3427.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:52,81:0.61:133
chr3	195518330	rs3107764	C	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:41,57:0.58:98
chr3	195538501	rs143120396	TTC	T	1281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.256;QD=3.02;ReadPosRankSum=-0.612;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:339,85:0.20:424
chr3	195591171	rs77750212	G	A	5213.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:149,229:0.61:378
chr3	195594151	rs10579442	CCT	C	19208.73	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:388,495:0.56:883
chr3	195594950	rs56260729	G	A	3909.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:74,172:0.70:246
chr3	195595632	rs13087251	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	195595657	rs34049168	G	A	1331.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,60:0.65:93
chr3	195596501	rs71637188	T	TAG	1088.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr3	195596636	rs13084875	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr3	195596907	rs2278034	T	C	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:104,130:0.56:234
chr3	195597288	rs2278033	T	C	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,104:0.65:160
chr3	195599085	rs2241413	T	C	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr3	195603652	rs9815549	T	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	195612034	rs3747672	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr3	195615376	rs3747669	A	G	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:55,105:0.66:160
chr3	195686832	rs201549703	G	A	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.259;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=7.166;MLEAC=1;MLEAF=0.500;MQ=46.04;MQRankSum=-1.372;QD=13.57;ReadPosRankSum=0.418;SOR=2.359;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr3	195686868	rs147286278	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.63;MQRankSum=-3.645;QD=8.97;ReadPosRankSum=-0.993;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr3	195686891	rs201127123	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.73;MQRankSum=-2.114;QD=2.27;ReadPosRankSum=-0.491;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr3	195686899	rs201656277	C	T	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-2.171;QD=3.70;ReadPosRankSum=-1.549;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr3	195690360	rs201250692	G	A	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.149;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=9.310;MLEAC=1;MLEAF=0.500;MQ=52.03;MQRankSum=-5.474;QD=1.46;ReadPosRankSum=0.411;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:103,14:0.12:117
chr3	195690385	.	T	C	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.259;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=48.69;MQRankSum=0.515;QD=5.00;ReadPosRankSum=0.687;SOR=1.465;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr3	195690397	rs148308206	A	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.66;QD=33.41;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr3	195692311	rs62282793	T	C	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:46,14:0.23:60
chr3	195692347	rs62282794	G	A	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:86,31:0.26:117
chr3	195701278	rs200131790	C	T	5046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=7.270;MLEAC=1;MLEAF=0.500;MQ=50.62;MQRankSum=-17.336;QD=8.48;ReadPosRankSum=1.000;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:442,153:0.26:595
chr3	195701285	rs201085786	G	T	5266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=5.900;MLEAC=1;MLEAF=0.500;MQ=51.22;MQRankSum=-15.679;QD=8.08;ReadPosRankSum=1.185;SOR=1.171;set=HC	GT:AD:AF:DP	0/1:480,172:0.26:652
chr3	195701301	rs201657527	A	T	5486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=749;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=52.06;MQRankSum=-11.810;QD=7.34;ReadPosRankSum=2.319;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:575,173:0.23:748
chr3	195701304	rs200047587	C	T	7487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=5.740;MLEAC=1;MLEAF=0.500;MQ=52.17;MQRankSum=-13.388;QD=9.79;ReadPosRankSum=2.002;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:549,216:0.28:765
chr3	195701310	.	C	CAA	7956.73	.	AC=1;AF=0.500;AN=2;DP=799;set=Intersection	GT:AD:AF:DP	0/1:567,231:0.29:798
chr3	195701331	rs78212497	G	A	4744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=-9.663;QD=5.58;ReadPosRankSum=1.356;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:574,276:0.32:850
chr3	195701365	.	AGGCACAGGC	A	3520.73	.	AC=1;AF=0.500;AN=2;DP=706;set=Intersection	GT:AD:AF:DP	0/1:542,127:0.19:669
chr3	195701472	.	A	G	1761.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr3	195701483	rs377526928	TCCA	T	1524.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr3	195702738	rs201183585	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.103;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=16.477;MLEAC=1;MLEAF=0.500;MQ=43.90;MQRankSum=-1.474;QD=3.43;ReadPosRankSum=0.542;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr3	195704020	rs200828293	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.346;MLEAC=1;MLEAF=0.500;MQ=44.54;MQRankSum=1.079;QD=1.13;ReadPosRankSum=-0.875;SOR=2.189;set=HC	GT:AD:AF:DP	0/1:44,8:0.15:52
chr3	195706589	rs146645407	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.06;QD=31.36;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr3	195710971	rs4927836	G	T	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=5.552;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-5.993;QD=1.54;ReadPosRankSum=1.014;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:233,51:0.18:284
chr3	195710989	rs2620604	G	A	2559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-9.986;QD=8.56;ReadPosRankSum=0.799;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:219,80:0.27:299
chr3	195710993	rs4927692	A	G	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=56.88;MQRankSum=-10.018;QD=8.52;ReadPosRankSum=1.263;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:219,76:0.26:295
chr3	195711042	rs56383352	C	G	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:110,117:0.52:227
chr3	195754164	rs6782834	A	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr3	195785328	rs13088791	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr3	195787306	rs13071789	T	C	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=-1.021;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr3	195787306	.	TTC	CTG	648	.	AC=2;AF=1.00;AN=2;BRF=0.04;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=27;MQ=60.0;NF=4;NR=9;PP=648;QD=53.9590672971;SC=CTAAGCTAACTTCACTCAAGT;SbPval=0.33;Source=Platypus;TC=18;TCF=4;TCR=14;TR=13;WE=195787316;WS=195787296;set=Platypus	GT:AD:AF:DP	1/1:5,13:0.72:18
chr3	195789414	rs2239641	T	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr3	195789428	rs507131	C	A	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr3	195789708	rs2239640	G	T	8668.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr3	195792288	rs55639089	CGGG	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=32.81;ReadPosRankSum=0.385;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr3	195792301	rs41295873	G	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.000;QD=18.62;ReadPosRankSum=2.157;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr3	195798258	rs480760	T	C	19042.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr3	195800811	rs3817672	C	T	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr3	195801938	rs5021790	T	A	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.44;SOR=1.412;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr3	195926234	rs939892	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr3	195926552	rs7630971	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:41,56:0.58:97
chr3	195935207	rs12497404	C	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr3	195936382	rs11719281	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:120,72:0.38:192
chr3	195936446	rs4916502	C	T	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr3	195937678	rs12718059	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr3	195938177	rs1522394	A	G	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:91,44:0.33:135
chr3	195955762	rs939885	G	A	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:78,170:0.69:248
chr3	195994049	.	C	CA	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.826;QD=2.57;ReadPosRankSum=0.831;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr3	196051087	rs147354585	GTC	G	457.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=6.139;QD=0.93;ReadPosRankSum=-2.220;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:433,58:0.12:491
chr3	196053773	.	G	A	358.77	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr3	196134294	.	TA	T	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.252;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr3	196158773	rs6583309	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr3	196198682	.	A	C	275.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr3	196199204	rs3796129	G	T	10581.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr3	196210590	rs7643192	A	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr3	196210808	rs7646174	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr3	196210894	rs7646273	T	C	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr3	196215352	rs34023868	C	CA	282.84	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr3	196215451	rs62798260	CA	C	690.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr3	196215660	rs11185543	G	A	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr3	196236244	rs6803596	T	C	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr3	196281208	rs9311	T	C	11324.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr3	196294104	rs9842616	C	G	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr3	196386964	rs1798631	C	G	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr3	196387517	.	A	G	15449.77	.	AC=1;AF=0.500;AN=2;DP=1216;set=Intersection	GT:AD:AF:DP	0/1:477,733:0.61:1210
chr3	196435331	rs55901490	CAG	C	5700.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr3	196435534	rs6776064	T	C	5006.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr3	196443803	rs1906044	T	C	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr3	196443826	rs1906045	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr3	196448103	rs9864896	C	T	3088.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr3	196453427	rs1976847	C	A	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr3	196453467	rs1568603	A	C	7605.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr3	196453654	rs12637375	C	A	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr3	196529926	rs77470308	C	A	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.205;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.069;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-14.368;QD=0.45;ReadPosRankSum=-5.684;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:236,41:0.15:277
chr3	196529978	rs79726945	C	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.384;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-16.329;QD=2.36;ReadPosRankSum=-1.931;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:330,46:0.12:376
chr3	196529982	rs78043821	A	G	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-16.306;QD=2.38;ReadPosRankSum=-3.310;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:329,46:0.12:375
chr3	196541580	rs11185455	G	A	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr3	196547538	rs2166799	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr3	196554266	rs62410763	C	T	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.275;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.198;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:41,45:0.52:86
chr3	196613075	rs34533379	C	T	4372.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:121,187:0.61:308
chr3	196613683	rs150375675	A	AG	196.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr3	196626689	rs9842002	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr3	196627088	rs9825635	A	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr3	196627335	rs6764463	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr3	196627356	rs9810317	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr3	196627361	rs6772870	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr3	196654507	rs10663759	T	TA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.820;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr3	196654536	rs2054200	G	A	564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=6.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.755;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr3	196656772	rs1602	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr3	196657670	rs63736860	CT	C	1681.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:51,102:0.67:153
chr3	196666059	rs553783	A	G	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:87,123:0.59:210
chr3	196669950	rs3732874	G	A	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr3	196674259	rs61179255	G	A	5199.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:156,234:0.60:390
chr3	196674749	rs4916589	C	T	6898.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr3	196674879	rs12636891	A	G	15231.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr3	196674972	rs574365	CT	TC	16942.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr3	196742243	rs45625439	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr3	196749798	rs2288766	T	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr3	196750016	rs2288765	A	G	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr3	196750841	rs2280294	C	A	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:88,55:0.38:143
chr3	196751474	rs2280296	C	T	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr3	196754819	rs2276788	C	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr3	196754856	rs12637442	C	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr3	196778438	rs7629533	C	T	5896.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:151,270:0.64:421
chr3	196793466	rs140259336	T	TA	294.74	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr3	196865242	rs1134986	C	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:65,49:0.43:114
chr3	196869518	rs9866058	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr3	196869688	rs7628652	A	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr3	196869820	rs9866550	T	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr3	197020630	rs364644	G	A	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr3	197020718	rs434681	T	C	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr3	197020780	rs3836429	G	GA	3450.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr3	197020871	rs450891	G	A	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	197239266	rs9325394	C	G	5262.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr3	197361944	rs11918438	G	T	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.252;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=6.153;MLEAC=1;MLEAF=0.500;MQ=52.99;MQRankSum=-1.607;QD=5.59;ReadPosRankSum=-0.707;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:125,53:0.30:178
chr3	197361995	rs56411292	A	G	1858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.94;MQRankSum=-9.025;QD=4.38;ReadPosRankSum=-0.923;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:308,116:0.27:424
chr3	197362030	rs2451791	C	T	6299.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:352,316:0.47:668
chr3	197362103	rs28434055	G	T	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DB;DP=848;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=6.533;QD=2.91;ReadPosRankSum=0.503;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:652,195:0.23:847
chr3	197362179	rs11915811	T	C	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=-1.598;QD=2.82;ReadPosRankSum=-3.180;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:267,71:0.21:338
chr3	197362184	rs9867990	C	T	5706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=49.86;MQRankSum=-3.391;QD=19.02;ReadPosRankSum=0.756;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:146,154:0.51:300
chr3	197362187	rs9867993	C	T	5588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.407;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=49.53;MQRankSum=-3.875;QD=19.68;ReadPosRankSum=1.206;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:141,143:0.50:284
chr3	197401952	rs28562770	T	C	3602.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:143,176:0.55:319
chr3	197409209	rs75774903	C	G	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr3	197409526	rs9817144	T	C	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:53,72:0.58:125
chr3	197409542	rs75643488	T	C	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,53:0.57:93
chr3	197411127	rs12107435	C	T	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr3	197427557	rs28394098	A	G	6018.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:250,295:0.54:545
chr3	197428127	rs7612230	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr3	197432029	rs60457064	C	A	12749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=595;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=-0.015;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:267,325:0.55:592
chr3	197432036	rs61743568	C	T	12982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.01;ReadPosRankSum=0.477;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:277,341:0.55:618
chr3	197432063	rs58507505	T	C	7421.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:286,354:0.55:640
chr3	197432124	rs78872082	T	C	5077.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:197,238:0.55:435
chr3	197482760	rs13068986	C	G	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr3	197483279	rs6794391	A	G	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr3	197495334	rs3205525	G	A	4052.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.231;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr3	197496984	rs1708460	A	G	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr3	197500394	rs3830497	T	TTTTG	10323.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:5,235:0.98:240
chr3	197500431	rs186644140	T	C	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:138,146:0.51:284
chr3	197544200	rs55896070	C	CGTGTGTGTGTGT	1827.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.55;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr3	197544201	.	A	ATTTTGTGTGTGTGTGCG	1831.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=63.16;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr3	197544231	.	G	GTATATATATATATATA	51.92	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr3	197557635	rs501101	C	T	11590.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr3	197566084	rs4857594	G	A	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr3	197574936	rs2306439	G	C	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.908;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr3	197581147	rs9863587	A	G	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr3	197585598	rs59909069	C	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:114,97:0.46:211
chr3	197597044	rs77281724	C	T	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:226,120:0.35:346
chr3	197602505	rs9758121	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.289;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr3	197610609	rs114390216	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,30:0.53:57
chr3	197616627	rs76681357	T	G	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:107,117:0.52:224
chr3	197639381	rs9809736	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr3	197653147	rs9823673	A	G	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr3	197659160	rs67877771	C	G	5672.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:218,271:0.55:489
chr3	197665599	rs9880989	G	T	3869.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:214,190:0.47:404
chr3	197670507	.	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.097;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr3	197680402	.	GAC	G	1756.73	.	AC=1;AF=0.500;AN=2;DP=179;set=Intersection	GT:AD:AF:DP	0/1:104,58:0.36:162
chr3	197687433	rs113060473	G	GA	1018.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:37,34:0.48:71
chr3	197701913	rs7373165	G	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr3	197702016	rs7373174	G	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr3	197712759	rs7373242	T	C	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:183,176:0.49:359
chr3	197717643	rs150387425	A	ATATT	2327.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,61:0.48:126
chr3	197762623	rs7640149	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr3	197765432	rs73091377	C	T	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:107,91:0.46:198
chr4	53428	rs2859214	G	A	7278.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	60335	rs2780400	A	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,42:0.42:100
chr4	60400	rs3864128	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr4	67783	rs113282456	C	CT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.373;QD=1.65;ReadPosRankSum=-3.531;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr4	85995	rs61336127	C	CA	9411.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	86016	rs57253237	G	GC	9183.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	86022	rs74490941	C	A	7666.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.98;QD=48.22;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	86022	.	CAG	ATA	2937	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=2;HapScore=1;MGOF=32;MMLQ=28;MQ=47.02;NF=25;NR=31;PP=2937;QD=20;SC=CAAAGCTTTACAGGGTCCACA;SbPval=0.29;Source=Platypus;TC=83;TCF=43;TCR=40;TR=56;WE=86052;WS=86006;set=Platypus	GT:AD:AF:DP	1/1:27,56:0.67:83
chr4	86023	rs78362263	A	T	7621.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.93;QD=47.64;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	86024	rs77715101	G	A	7576.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.86;QD=48.57;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	86031	rs367720730	CA	C	7612.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.02;QD=47.28;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	86032	.	AAT	A	2973	.	AC=2;AF=1.00;AN=2;BRF=0.58;FR=1.0000;HP=1;HapScore=1;MGOF=32;MMLQ=28;MQ=48.91;NF=12;NR=31;PP=2973;QD=20;SC=CAGGGTCCACAATCCACTGAA;SbPval=0.55;Source=Platypus;TC=43;TCF=12;TCR=31;TR=43;WE=86052;WS=86006;set=Platypus	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	86034	rs57594632	TC	T	7522.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.02;QD=46.73;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	86040	rs17853557	G	T	7576.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.03;QD=46.48;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	86042	rs17857099	A	G	7676.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.95;QD=47.98;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	86044	rs17857100	G	A	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.05;QD=44.89;SOR=1.301;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	86101	rs58319295	G	GC	10920.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	86738	rs2353625	A	G	8797.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr4	87277	rs2006764	G	C	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr4	87313	rs60154095	G	GA	12629.73	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr4	135694	rs12504142	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	331658	rs3749520	T	C	8889.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.45;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	331666	rs3749521	G	C	9176.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=43.49;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	331693	rs5855672	G	GC	9513.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	331878	rs180892009	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	343795	rs3037605	C	CTGCT	5708.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	376888	rs6854214	C	A	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	420688	rs2280250	C	T	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	420885	rs145944460	G	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	429720	rs894534	T	C	7891.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	499439	.	T	A	364	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=17;HapScore=2;MGOF=7;MMLQ=27;MQ=59.01;NF=14;NR=0;PP=364;QD=28.4836580391;SC=AAAAAAAAAATCTTCAGTGCC;SbPval=1.0;Source=Platypus;TC=15;TCF=15;TCR=0;TR=14;WE=499447;WS=499430;set=Platypus	GT:AD:AF:DP	1/1:1,14:0.93:15
chr4	500500	rs17721401	T	C	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	500631	rs4690182	A	G	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	628693	rs72613106	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	647503	rs28569875	G	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	647506	rs9992641	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	648643	rs10902758	G	A	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	648709	rs10027549	G	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	649639	rs28742899	C	A	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	649876	rs28630797	C	T	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	651369	rs28742266	T	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.80;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	652826	rs74464382	C	T	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr4	655881	rs73058406	C	G	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	656604	rs28586910	G	T	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	658089	rs7436737	G	A	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	663908	rs28675771	A	G	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.95;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	666212	rs4463020	T	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	666385	.	ATT	A	472.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.55;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr4	667076	rs80010815	C	G	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	671887	rs58227539	C	T	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	671895	rs58342428	C	CAA	4857.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	676992	rs10030136	C	T	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr4	738512	rs6841958	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	755210	rs2242235	A	G	7955.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr4	759709	rs6810428	A	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	759721	rs62294078	C	T	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	759733	rs6816483	T	C	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	759872	rs73058482	T	C	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	780286	rs10794536	C	G	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	786401	rs2306251	T	C	12258.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr4	786508	rs2306250	T	C	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	818440	rs2276906	G	A	15808.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr4	843341	rs187145550	G	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	843622	rs33919242	AC	A	11583.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr4	843630	.	C	T	11905.77	.	AC=2;AF=1.00;AN=2;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=42.67;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	843695	rs8093	A	G	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	845772	rs10031922	T	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	845841	rs17165087	C	T	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	858866	rs1026739	G	A	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	858874	rs3214922	T	TC	5161.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	858941	rs1026738	T	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	860146	rs2306248	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	860192	rs1064207	A	G	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	862502	rs2306244	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	871675	rs1564280	A	G	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	875671	rs45486093	T	C	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	876318	rs3736087	C	T	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	877709	rs3736083	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	878048	rs899387	C	T	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	887513	rs33951409	AC	A	1098.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,46:0.94:49
chr4	892082	rs3830209	TGCA	T	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	906131	rs11248057	C	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	906647	rs2279178	A	G	9969.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr4	941518	rs2290402	C	T	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	946226	rs11552301	T	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	946262	.	CTGTGTGTG	C,CTG	712.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=43;set=Intersection	GT:AF:DP	1/2:0.33,0.67:18
chr4	946974	rs2290405	G	A	7921.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr4	951947	rs34311866	T	C	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	954277	rs3733347	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	954741	rs56039006	C	G	9094.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr4	960081	rs4690324	G	A	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr4	962053	rs62294487	G	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-0.948;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	962056	rs62294488	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=-1.557;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr4	980971	rs10794537	T	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	994414	rs3755955	G	A	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	995305	rs6815946	T	C	10352.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr4	995422	rs6829789	G	C	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr4	995459	rs6848974	C	T	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	995919	rs6830825	G	C	12986.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr4	995997	rs6811373	A	G	26135.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr4	996012	rs6831021	G	C	27238.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr4	996165	rs6831280	G	A	30679.77	.	AC=2;AF=1.00;AN=2;DB;DP=1164;set=Intersection	GT:AD:AF:DP	1/1:0,1159:1.00:1159
chr4	996248	rs6836258	G	C	9052.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr4	996501	rs150523349	G	GC	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=16.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=-1.010;SOR=5.418;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr4	996560	rs115790973	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	996690	rs73066479	G	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	996768	rs115134980	T	C	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr4	996888	rs115929690	C	T	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	996986	rs188458034	G	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	997095	rs1131853	T	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	997485	rs2305488	T	G	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	1006333	rs4647942	G	A	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	1016279	rs4647934	G	A	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	1019054	rs145808953	CCA	C	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.701;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:276,58:0.17:334
chr4	1050437	rs7680608	C	G	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	1050653	rs3816474	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	1050849	rs10003009	GT	AC	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	1050909	rs9992925	A	T	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	1052046	.	TGTGAAGAAGGTGCTTGCGGGGGTTAGAACGCA	T	2226	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=44;MMLQ=23;MQ=65.0;NF=6;NR=17;PP=2226;QD=98.3043478261;SC=GTTAGAACGCTGTGAAGAAGG;SbPval=0.45;Source=Platypus;TC=26;TCF=6;TCR=20;TR=23;WE=1052085;WS=1052036;set=Platypus	GT:AD:AF:DP	1/1:3,23:0.88:26
chr4	1052067	.	GGTT	G	3518.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.51;QD=44.54;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	1052071	.	AGAACGCAGTGAAGAAGGTGCTTGCGGGGG	A	3657.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.62;QD=46.30;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	1052100	.	G	A	1277	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=6;HapScore=1;MGOF=75;MMLQ=23;MQ=65.22;NF=38;NR=25;PP=1277;QD=20.8217652785;SC=GCTTGCGGGGGGGCACTACCT;SbPval=0.57;Source=Platypus;TC=64;TCF=38;TCR=26;TR=63;WE=1052108;WS=1052090;set=Platypus	GT:AD:AF:DP	1/1:1,63:0.98:64
chr4	1052125	rs11724371	T	C	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	1052166	rs2248083	A	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.30;QD=46.47;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	1052206	rs2045069	T	C	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.12;QD=45.72;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	1052212	rs2045068	G	A	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.84;QD=45.05;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	1052355	rs2045067	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	1067267	rs2290408	G	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	1067638	rs6852155	T	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	1084723	rs658846	G	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	1087168	rs61648964	A	AAT	7270.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	1087171	rs59985183	G	T	7302.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	1087265	rs1670534	T	C	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr4	1087327	rs138488801	G	GCTGCCCAGGCTGGAGCCAGCC	8887.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	1087329	rs118112880	C	T	9328.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.61;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	1087338	rs11725984	C	T	8066.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	1090625	rs4045481	G	A	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	1102005	rs56287616	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	1102050	rs4974644	C	T	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	1164277	rs2279279	C	G	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	1164552	rs13115935	A	G	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	1165130	rs11247975	G	T	7607.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr4	1165587	rs2242279	C	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	1165741	rs922697	A	G	6155.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	1194630	rs56401136	T	C	10956.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr4	1207517	rs11247979	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	1215585	rs1250088	T	C	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	1217056	rs2004531	G	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	1243329	rs79746330	C	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	1243404	rs1680033	C	T	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	1243573	rs1680032	T	C	7404.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	1244416	rs1732115	A	G	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	1342113	rs138850155	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	1346903	rs77892061	G	A	16962.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr4	1619865	rs11722375	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	1719294	rs2236786	T	C	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	1732573	rs146419121	GGGGT	G	4907.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	1795321	rs4450996	C	A	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	1805296	rs3135883	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	1805593	rs3135886	G	C	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	1806012	rs377096563	TG	T	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.861;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:95,18:0.16:113
chr4	1806519	rs3135890	C	T	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	1806834	rs4865476	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	1807894	rs7688609	G	A	12164.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr4	1809127	rs34562534	CGT	C	1529.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=32.55;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	1818594	rs9328763	C	T	8290.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	1834447	rs56223366	G	C	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	1954945	rs489550	A	G	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	1961137	rs474235	G	A	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	2044128	rs570712	C	T	2923.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	2130783	.	CA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.209;QD=1.83;ReadPosRankSum=-1.103;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr4	2158102	rs34241266	CT	C	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.561;QD=10.10;ReadPosRankSum=-1.932;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:14,51:0.78:65
chr4	2158273	rs3216822	GGA	G	3550.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	2158408	rs428361	C	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	2233852	rs2031728	T	C	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	2275145	rs736455	G	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	2275718	rs2182682	G	A	5296.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	2275835	rs2051561	G	A	9309.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr4	2276047	rs11248093	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	2306053	rs661301	A	G	6630.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	2332799	rs1887364	C	T	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	2438492	rs1203763	T	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	2439670	rs1203762	A	G	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	2439738	rs7688771	G	A	13005.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,487:1.00:487
chr4	2439756	rs5855731	C	CT	22990.73	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr4	2439900	rs7660914	C	A	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr4	2439965	rs17132558	G	C	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	2451694	rs3108494	T	C	11571.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr4	2452933	rs3888113	T	C	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	2460571	rs73205493	C	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	2460803	rs704346	A	G	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	2461888	rs3135152	A	G	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr4	2464179	rs3135150	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	2502299	rs55745322	A	ATT	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;MQ=61.78;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	2513620	rs3128839	G	A	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	2513624	rs4974709	A	G	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	2513842	rs2269490	A	G	165.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	2698364	rs3733215	C	T	2304.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	2717690	rs2295499	C	T	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	2743999	rs232712	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	2744087	rs2269495	G	A	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	2746285	rs13145281	A	C	9039.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr4	2746307	rs11728346	A	C	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	2828527	rs62637096	G	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	2828630	rs72613119	G	T	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	2928125	rs1263345	C	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	2928413	rs4964	T	C	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	2933271	rs1263348	G	A	8795.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr4	2934308	rs1263349	G	A	18301.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr4	2935251	rs2301374	T	A	9613.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr4	2935468	rs192173680	G	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	2965874	.	AC	A	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.377;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr4	3029588	rs2857844	G	A	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	3039150	rs1801058	T	C	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	3039311	rs2071689	C	T	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	3040279	rs11451355	G	GA	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-0.384;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr4	3076603	.	CCAGCAGCAGCAG	CCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG,CCAGCAGCAGCAGCAGCAGCAGCAGCAG,C	3559.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=180;set=Intersection	GT:AF:DP	2/1:0.14,0.86:65
chr4	3144441	rs363107	A	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	3180021	rs363096	T	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	3210446	.	TA	T	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.453;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr4	3219613	rs2857790	A	C	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	3222082	rs41264739	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	3230804	rs2530598	A	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.651;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	3240526	rs2858081	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	3262960	.	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=4.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.835;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:117,26:0.18:143
chr4	3263138	rs3095073	G	A	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	3265479	rs3095078	C	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	3265710	rs3095077	C	T	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	3317873	rs16844147	C	G	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	3318413	rs2236052	A	G	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	3318726	rs16844152	A	T	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	3319805	.	C	CGGAGGCCCGGCCTCCTCACTTAGCAGCCTCAGCGT	947.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=47.39;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	3344680	rs61748736	G	A	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	3372263	rs6826720	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	3443931	rs13108218	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	3444690	rs73195104	G	A	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	3475252	rs4325970	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	3516689	rs2515967	T	C	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	3589623	rs10937959	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,72:0.67:107
chr4	3589669	.	G	GACTTCCTGGTGCACCTGC	3260.73	.	AC=1;AF=0.500;AN=2;DP=260;set=Intersection	GT:AD:AF:DP	0/1:165,79:0.32:244
chr4	3589689	rs7657417	C	A	4962.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:144,219:0.60:363
chr4	3589719	rs59190481	CA	C	20156.73	.	AC=2;AF=1.00;AN=2;DB;DP=511;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr4	3589846	rs7672828	T	C	5566.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:214,269:0.56:483
chr4	3589893	rs6843750	G	A	2902.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:140,134:0.49:274
chr4	3590537	rs73199384	G	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr4	3590549	rs73793633	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr4	3590577	rs73793634	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr4	3590588	rs73199385	A	C	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:57,68:0.54:125
chr4	3590683	rs62272966	T	G	10030.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:233,269:0.54:502
chr4	3590711	rs62272967	G	T	10521.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:244,269:0.52:513
chr4	3590730	rs62272968	G	A	9750.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:214,247:0.54:461
chr4	3590817	rs62272969	T	C	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:133,174:0.57:307
chr4	3590823	rs72180705	GACAC	G,GAC	11620.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=2.460;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.68;MQRankSum=0.518;QD=34.59;ReadPosRankSum=-2.115;SOR=0.977;set=HC	GT:AD:AF:DP	1/2:3,230,103:0.68,0.31:336
chr4	3590878	rs62272970	C	T	9318.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:295,297:0.50:592
chr4	3590911	rs34447251	A	C	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:435,210:0.33:645
chr4	3591015	rs62272971	A	C	11022.77	.	AC=1;AF=0.500;AN=2;DB;DP=1108;set=Intersection	GT:AD:AF:DP	0/1:550,550:0.50:1100
chr4	3591049	rs62272972	C	T	24932.77	.	AC=1;AF=0.500;AN=2;DB;DP=1332;set=Intersection	GT:AD:AF:DP	0/1:669,661:0.50:1330
chr4	3591069	rs62272973	C	T	25206.77	.	AC=1;AF=0.500;AN=2;DB;DP=1342;set=Intersection	GT:AD:AF:DP	0/1:668,672:0.50:1340
chr4	3769789	rs11269124	G	GGGGGAGCTTTCCCAGAGACCC	3321.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	4190507	.	C	CTTG	186.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-10.692;QD=1.61;ReadPosRankSum=-2.145;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:103,13:0.11:116
chr4	4190508	.	C	T	219.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-10.692;QD=1.89;ReadPosRankSum=-1.664;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:103,13:0.11:116
chr4	4190511	.	G	GTCACTTGTTA	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-11.283;QD=2.49;ReadPosRankSum=-1.216;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:115,14:0.11:129
chr4	4190576	rs199742451	CG	GC	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-14.019;QD=2.60;ReadPosRankSum=0.574;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:222,31:0.12:253
chr4	4190595	rs79218997	G	C	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.775;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=1.759;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-15.648;QD=1.58;ReadPosRankSum=-1.324;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:255,60:0.19:315
chr4	4190792	rs2920255	A	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	4228008	rs1811445	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	4228028	rs55839893	G	T	310.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=0.385;QD=25.90;ReadPosRankSum=1.190;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	4228029	rs36055674	A	AAAG	301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=0.385;QD=25.14;ReadPosRankSum=1.196;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	4228424	.	TT	CC	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-5.044;QD=2.62;ReadPosRankSum=-2.882;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr4	4239516	rs62286913	C	T	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr4	4239539	rs62286914	C	T	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=8.391;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-7.909;QD=9.63;ReadPosRankSum=1.607;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:113,45:0.28:158
chr4	4249483	rs2916466	C	T	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	4249884	rs6854167	G	T	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	4275976	rs11723469	A	C	1377.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.562;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=-4.761;QD=18.87;ReadPosRankSum=0.532;SOR=1.732;set=HC	GT:AD:AF:DP	1/1:3,70:0.96:73
chr4	4275986	rs11723471	A	C	3707.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.418;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.207;QD=39.44;ReadPosRankSum=1.220;SOR=1.886;set=HC	GT:AD:AF:DP	1/1:1,93:0.99:94
chr4	4276132	rs7376390	T	C	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	4285221	rs2980214	A	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	4301537	rs60953649	T	A	417.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	4304337	rs2916382	C	T	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	4393068	rs3792686	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	4422558	rs34931639	A	C	6016.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	4425422	rs10675705	C	CAG	1449.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	4864276	rs10213148	A	G	6277.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	4864381	rs1042484	A	G	11939.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr4	5016841	rs6847131	G	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	5017146	rs67449859	A	AT	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.75;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	5017149	.	T	TTCATTTC	824	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=2;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=0;NR=11;PP=824;QD=77.5454545455;SC=AAATTTCATTTCCATAATTTT;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=11;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:3,11:0.79:14
chr4	5017150	.	C	A	279	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=3;HapScore=2;MGOF=12;MMLQ=28;MQ=60.0;NF=2;NR=11;PP=279;QD=24.136247119;SC=AATTTCATTTCCATAATTTTC;SbPval=0.57;Source=Platypus;TC=14;TCF=2;TCR=12;TR=13;WE=5017158;WS=5017139;set=Platypus	GT:AD:AF:DP	1/1:1,13:0.93:14
chr4	5017150	rs34659865	C	CATTTCA	766.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	5018702	rs11724788	G	A	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	5128650	rs895679	T	C	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	5418383	rs2301858	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	5418539	rs168985	C	T	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	5469810	rs2301855	T	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	5469916	rs41268643	G	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	5500511	rs13116133	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	5577884	rs6840591	T	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr4	5642161	rs751841	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	5686924	rs957727	G	A	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	5686967	rs957726	C	T	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	5687263	rs998092	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	5692977	rs17688121	C	T	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	5693112	rs35705473	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	5699473	.	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=-0.592;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr4	5721021	rs2291157	A	C	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	5743509	rs6446393	C	T	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	5743512	rs6414624	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	5746916	rs4689313	C	T	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	5747078	rs2286342	A	G	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	5747131	rs13145958	C	A	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	5749784	rs4689312	G	A	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	5749804	rs4689311	G	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	5749904	rs4688963	T	C	8119.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr4	5749961	rs4688962	G	C	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	5750084	rs4688961	A	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	5754544	rs899691	T	C	3854.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	5754579	rs28483498	C	T	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr4	5755373	rs7660793	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	5755542	rs2302075	C	A	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	5757932	.	G	GA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.910;QD=1.11;ReadPosRankSum=0.522;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:78,25:0.24:103
chr4	5785442	rs1383180	G	A	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	5830414	rs6818391	T	C	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	5838513	rs12331	C	T	9535.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr4	5863032	rs13130069	G	A	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	5925186	rs4348041	G	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	5966618	rs6828891	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	5969113	rs9997727	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	5969235	rs7690750	A	G	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	5969252	rs7690889	A	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	5969292	rs6446420	C	A	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	5969303	rs6446421	T	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	5969364	rs6446422	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	5975538	rs16837960	G	A	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	5977462	rs4689291	C	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	5977553	rs4689290	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	5977566	rs4689289	C	A	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	5990110	rs4689287	C	A	10191.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr4	5990339	rs6845455	G	A	7190.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	5990551	rs58136927	G	A	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	5990599	rs751240	T	C	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	5990791	rs2016083	A	G	12251.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr4	5990868	rs143859826	CCT	C	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.270;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-2.072;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:296,42:0.12:338
chr4	5991384	rs4234711	T	C	10961.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr4	5991476	rs4266238	G	A	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	6050724	.	G	GT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=1.852;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.955;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:147,28:0.16:175
chr4	6114420	rs1543965	GCC	TAA	18708.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	6335186	rs4689405	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	6335203	rs10937722	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	6374189	rs6837903	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	6374230	rs35520578	C	CA	4617.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	6377530	rs4688997	C	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	6377534	rs4688998	A	G	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	6377713	rs4234738	G	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	6578487	rs4689485	A	G	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	6594827	rs10937747	A	G	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr4	6596360	rs2301795	G	A	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	6619052	rs4689488	A	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	6619165	rs4689489	A	G	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	6619204	rs4689490	G	A	10910.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr4	6623032	rs4234768	G	T	10824.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	6698500	rs113431497	C	CTGAGCCTGAA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	6698667	rs11734898	T	C	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	6698706	rs11733989	A	C	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	6718775	rs3172604	G	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	6925009	rs41516949	A	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	6956059	rs11732887	T	C	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	6956134	rs11732898	T	C	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr4	6968942	rs9291126	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	7002803	rs2301817	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	7027041	rs6834102	C	T	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	7044357	rs871133	A	G	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	7064212	.	G	GAGATTT	55.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-0.333;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr4	7064213	rs60458218	A	AGATT	683.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=1.817;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:30,40:0.57:70
chr4	7064214	rs9291128	T	G	154.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=0.714;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr4	7064217	.	T	TTA,A	2647.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=36.27;ReadPosRankSum=1.087;SOR=0.755;set=HC	GT:AD:AF:DP	1/2:3,13,57:0.18,0.78:73
chr4	7312145	rs11942816	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	7435379	rs4689746	A	G	7701.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr4	7436486	rs11548325	C	A	7995.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:1,297:1.00:298
chr4	7461826	rs10655902	C	CCCA	11659.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	7461915	rs12498272	T	A	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	7533383	rs138145562	A	G	10378.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:1,393:1.00:394
chr4	7655855	rs2285789	C	T	4277.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	7684641	rs4689820	C	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	7684661	rs4689821	CT	AC	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	7691193	rs929264	G	C	6513.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr4	7714490	rs4689833	T	C	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr4	7716932	rs6816604	T	C	24105.77	.	AC=2;AF=1.00;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	1/1:0,920:1.00:920
chr4	7731310	rs1544402	G	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	7731560	rs1076226	T	A	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	7736455	rs6843811	G	A	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	7738730	rs6840685	A	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	7741851	rs12501485	A	G	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	7770613	rs62636596	C	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	7783163	rs28542374	G	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	7802227	rs28406288	G	C	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	7817698	.	G	GT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.563;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:134,30:0.18:164
chr4	7820727	rs4447865	T	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	7840561	.	TCA	T	55	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=55;QD=19.6666666667;SC=ATGAGCAGGTTCACACACACA;SbPval=1.0;Source=Platypus;TC=17;TCF=2;TCR=15;TR=3;WE=7840570;WS=7840551;set=Platypus	GT:AD:AF:DP	0/1:14,3:0.18:17
chr4	7857230	rs61742221	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	8006928	rs11939078	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	8009737	rs16841552	C	T	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	8009759	rs17180256	G	A	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	8010035	rs116400685	C	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	8062638	rs6853485	A	C	2802.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	8062689	rs6811028	TG	CA	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	8062871	rs6853901	A	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	8207083	rs2677605	A	G	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	8207154	rs1298878	C	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	8211624	rs1712316	C	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	8214444	rs11734194	G	T	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	8214636	rs1712287	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	8220191	rs113142756	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	8221058	rs4696782	G	A	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr4	8224414	rs113477900	T	TGTC	570.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.19;QD=38.05;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	8228627	rs1678299	G	C	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	8228632	rs1678300	A	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.74;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	8228731	rs1281145	T	C	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	8228894	rs1292647	T	C	3896.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	8228948	rs55642964	T	C	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	8229218	rs1281146	A	G	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	8229326	rs1281147	T	C	4587.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr4	8229713	rs1281148	A	G	18416.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr4	8229774	rs1281149	C	T	20333.77	.	AC=2;AF=1.00;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	1/1:0,779:1.00:779
chr4	8230070	rs1281150	T	C	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	8230235	rs1281151	T	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	8233943	rs2276947	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	8234381	rs3775905	T	C	8009.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr4	8237096	rs1678260	G	C	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	8238151	rs11603	C	T	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	8242466	rs1281103	A	G	9008.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	8242740	rs8153	G	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	8368604	rs708244	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	8368869	rs827000	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	8368932	rs827001	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	8368949	rs827002	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	8415982	rs2245515	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	8451656	.	A	ATTTTCTTTTC	403.73	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.14;QD=33.64;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	8454639	rs1880024	A	G	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	8473050	rs2631768	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	8594574	rs2302583	T	C	8743.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	8594577	rs34964084	C	T	5468.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.68;ReadPosRankSum=-0.975;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:2,203:0.99:205
chr4	8594815	rs4411969	T	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	8601298	rs11723641	G	A	8954.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr4	8601381	rs7671320	A	G	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	8602793	rs4299567	T	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	8602816	rs4594711	A	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	8602884	rs4301095	T	C	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	8602935	rs4431213	A	G	7380.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	8607587	rs4696703	G	A	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	8608634	rs2302580	C	T	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	8608934	rs2302579	C	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	8608979	rs2302578	G	A	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	8613917	rs12511563	CG	GT	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.47;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	8613961	rs13120023	G	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	8616054	rs2302572	C	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	8616070	rs2302571	T	C	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr4	8616096	rs1131140	T	C	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr4	8616179	rs7378066	T	C	6658.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	8620045	rs4444816	A	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	8620325	rs4696872	A	G	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	8620873	rs13132404	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	8621194	rs28514374	A	G	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	8621386	rs1050464	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	9370908	rs11938651	C	T	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	9785134	rs1967551	T	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	9909923	rs2280205	G	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	9982191	rs13115193	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	9982330	rs13125646	A	G	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr4	9998440	rs10939650	C	T	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	9998493	rs13113918	A	G	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	9998605	rs28592748	T	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	10020564	rs2240721	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	10020757	rs2240722	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	10022981	rs2276961	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	10085949	rs2241473	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	10086015	rs2241474	T	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	10086188	rs2241475	T	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	10089865	rs734122	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	10090178	rs4235349	T	C	8245.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr4	10094698	rs3822246	G	A	10059.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr4	10094783	rs3822245	T	C	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr4	10099277	rs41268389	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	10099340	rs13441	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	10099542	.	C	CAAA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=1.273;QD=7.67;ReadPosRankSum=1.642;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr4	10100801	rs2241484	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.58;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	10100812	rs2241485	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	10444650	rs3217	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	10445333	.	T	G	2689.77	.	AC=2;AF=1.00;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	10446385	rs9291410	C	T	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr4	10446906	rs10016022	A	G	9426.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr4	10447985	rs35177766	AT	A	3285.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	10502937	rs2903960	T	G	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	10509699	rs2868941	T	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr4	10525711	rs148908322	A	AGAG	1403.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.65;MQRankSum=0.402;QD=38.99;ReadPosRankSum=-1.542;SOR=0.516;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr4	10527342	rs2108878	C	T	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	10542058	rs1962796	C	G	6096.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	11370592	rs6448674	T	C	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;MQ=57.16;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	13548796	rs2080023	T	G	6504.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr4	13578405	rs2052159	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	13578682	rs7695814	A	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	13590438	rs142952587	G	GA	461.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr4	13593336	rs758975	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	13629437	rs34798341	G	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	15443685	rs13108125	T	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	15480225	rs9993580	A	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	15482477	rs10000250	A	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	15503994	rs144502190	T	TTTTTC	1354.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	15517756	rs58218122	AT	A	204.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.65;ReadPosRankSum=1.915;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr4	15521403	rs73235032	G	A	4295.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.12;ReadPosRankSum=-0.586;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:2,169:0.99:171
chr4	15538744	rs1558572	T	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	15539779	rs17476642	C	T	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	15562013	rs17476879	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	15568992	rs13121363	T	C	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	15569146	rs13116304	A	C	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	15575718	rs4280723	C	G	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	15587897	rs6832789	A	T	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	15602771	.	C	CTT	1042.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	15602772	.	AC	A	1042.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	15632228	rs3775956	A	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	15688604	rs2302469	G	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	15689632	rs11729955	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	15690233	rs6449160	C	A	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	15706502	rs35181008	G	GTC	10172.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr4	15709192	rs2302465	G	A	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	15724372	rs140614767	G	A	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	15737863	rs4273468	G	A	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	15737890	rs4613561	T	C	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	15737937	rs4538475	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	15739390	rs4263397	T	G	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	15739416	rs3900588	G	C	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	15739428	rs4320134	A	T	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr4	15739488	rs4283655	A	G	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.21;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	15739498	rs997250	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.39;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	15937731	rs2072313	T	C	7277.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr4	15964485	rs758329	G	A	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr4	15964573	rs758328	A	G	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr4	15972905	rs11735976	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	15977572	rs11734657	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	15977731	rs3796861	C	T	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	15977823	rs3796860	A	C	4351.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	15977828	rs3796859	C	G	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	15977980	rs3796858	C	A	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	15980975	rs11725522	G	A	7752.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr4	15981885	rs3841512	G	GA	900.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:4,44:0.92:48
chr4	15981926	.	TAA	T,TA	1202.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.729;QD=10.11;ReadPosRankSum=1.684;SOR=0.784;set=HC	GT:AD:AF:DP	1/2:24,35,60:0.29,0.50:119
chr4	15982166	rs6449209	A	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	15982236	rs201460480	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=1.803;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr4	15986042	rs7675574	G	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	15986113	rs7659341	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	15987509	.	T	TTTAAG	500.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	15987512	.	T	TGCTTATTTAATCTGTATTAAATATTTAATACAGATAA	1537.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=118.29;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	15989190	rs139574888	TC	T	2236.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	15989500	rs34264338	C	CT	243.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.714;QD=8.11;ReadPosRankSum=1.089;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr4	15991275	rs2240685	G	A	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	16002050	rs6449212	T	C	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	16002288	rs17478107	T	C	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr4	16024885	rs2013854	A	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	16025837	rs17478336	C	T	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	16026696	rs17478392	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	16037352	rs2078622	C	T	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	16168512	rs11724423	C	A	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	16172181	rs1662654	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	16189991	rs75841626	A	T	3003.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:3,109:0.97:112
chr4	16190073	rs28645901	T	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	16192413	rs7666361	C	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	16198378	rs10939652	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	16198439	rs10939653	T	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	16215537	rs12651110	T	G	6723.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.510;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.37;ReadPosRankSum=-0.679;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:1,264:1.00:265
chr4	16227781	rs3749543	A	G	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	16513748	rs6824949	T	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	16597280	rs1506462	T	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	16753863	rs283027	A	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	17492145	rs731437	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	17494054	rs2597772	A	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	17503561	rs3733573	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	17511127	rs3733574	T	C	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	17513498	rs3217604	GC	G	9155.73	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr4	17517099	rs1551091	A	G	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	17581617	rs10939736	T	A	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	17581643	rs35153429	CAG	C	3003.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	17583200	rs5856433	TAA	T	441.86	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:3,21:0.88:24
chr4	17586703	rs3733576	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	17590671	rs17499929	G	A	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	17590686	rs35467396	AT	A	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.033;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.892;QD=9.85;ReadPosRankSum=-0.773;SOR=2.432;set=HC	GT:AD:AF:DP	0/1:11,38:0.78:49
chr4	17590734	rs11737120	A	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	17599894	rs3775927	G	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	17608620	rs4698628	A	G	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	17608884	rs4698629	C	G	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	17625209	rs11733730	G	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	17627294	rs2315552	A	G	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr4	17627332	rs2315553	T	C	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	17634213	rs6825562	A	G	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	17634255	rs6847966	G	A	5043.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	17634256	rs142873186	C	CAA	4989.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	17635556	rs140729140	CAAAAT	C	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	17636507	rs3214318	G	GT	195.87	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr4	17640858	rs6811887	C	T	5983.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	17643620	rs28501187	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	17643848	rs2286771	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	17649233	rs3733577	T	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	17649494	rs6813374	T	C	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.78;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	17649499	rs6813375	T	G	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.25;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	17654648	rs3815413	T	C	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	17659936	rs10939742	G	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	17660082	rs1860596	C	T	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	17660237	rs2302391	T	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	17689901	rs11306510	AT	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.09;ReadPosRankSum=-0.414;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	17689974	rs4698646	T	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	17690072	rs61741063	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	17694880	rs6449324	G	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	17694916	rs3822235	A	G	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	17694943	rs3733579	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	17707361	rs57570581	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	17707627	rs62295656	C	A	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	17711076	rs3733583	T	C	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	17812615	rs2074974	A	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	17818885	rs2302212	T	C	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	17841948	rs2286534	T	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr4	17885296	rs139656197	A	AAC	444.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=0.672;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr4	20256722	rs1323066	G	A	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	20270600	rs2196476	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	20490710	rs543593	T	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	20492380	rs485909	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	20520993	rs519813	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	20526985	rs146437952	C	CAT	247.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	20547532	rs12501787	C	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	20547578	rs12501870	G	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	20552510	rs17542486	A	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	20555358	.	TTGTG	T	61	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=61;QD=33.5;SC=ACTTCCATACTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=13;TCF=10;TCR=3;TR=2;WE=20555369;WS=20555348;set=Platypus	GT:AD:AF:DP	1/0:11,2:0.15:13
chr4	20569099	rs2290750	A	G	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	20569254	rs12506323	A	G	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	20569259	rs2290751	C	T	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	20570787	rs17620615	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	20599758	rs3775833	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	20599783	rs67622693	CAT	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	20599796	rs12507257	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	20620683	rs1379659	G	A	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	20703376	rs2874831	C	T	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	20709238	rs35495469	G	GA	448.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	20709411	rs57364495	C	T	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	20726537	rs10654905	C	CT	479.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	20733708	rs111474115	C	CA	1877.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	20734176	rs6811933	C	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	20760683	rs17623902	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	20884202	.	G	GA	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.766;QD=1.56;ReadPosRankSum=-1.397;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr4	20884482	rs57696441	G	GA	240.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	21305653	.	TGAGA	T,TGA	413.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.04;MQRankSum=0.189;QD=25.86;ReadPosRankSum=0.543;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:1,6,9:0.38,0.56:16
chr4	21305694	.	GAGAGAGAGAGAGAGAC	G	381.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.22;QD=38.17;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	21698939	rs3050892	TA	T	58.25	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=5.82;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr4	21950259	rs6448102	A	G	8207.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr4	22416133	rs7658234	C	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	22416195	rs13106386	C	G	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	22439914	rs6823735	A	C	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	22444692	rs10018144	C	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	22457478	rs16872669	C	T	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	22715639	rs1963996	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	22749783	.	G	GTATATA,GTA	268.14	.	AC=1,0;AF=0.500,0.00;AN=2;DP=12;set=Intersection	GT:AF:DP	0/1:0.80:10
chr4	22820504	rs358231	A	T	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	23815924	rs2970847	T	C	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	23822328	rs2932976	G	A	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	24534687	rs3828558	T	C	5564.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	24538573	rs4697063	A	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	24801315	rs2536512	G	A	7795.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr4	24801949	rs2695232	C	T	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	24809884	rs1019229	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	24810128	.	G	C	6732.77	.	AC=2;AF=1.00;AN=2;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	24824076	.	G	GA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.648;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr4	25028472	rs34396934	A	G	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr4	25160732	rs34423002	T	TA	577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.140;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:89,56:0.39:145
chr4	25265306	.	A	G	591.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	25315637	rs199972003	C	CT	773.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=5.244;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-1.645;SOR=0.523;set=HC	GT:AD:AF:DP	1/1:12,50:0.81:62
chr4	25316886	rs316800	C	A	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	25363901	rs315675	T	A	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr4	25370589	rs396393	C	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.89;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	25370589	.	CAA	TAG	598	.	AC=2;AF=1.00;AN=2;BRF=0.07;FR=1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=26;MQ=60.0;NF=12;NR=5;PP=598;QD=38.3216396978;SC=AATTAAACTTCAACATAATTA;SbPval=0.48;Source=Platypus;TC=19;TCF=14;TCR=5;TR=17;WE=25370599;WS=25370579;set=Platypus	GT:AD:AF:DP	1/1:2,17:0.89:19
chr4	25370591	rs414879	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.23;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	25370627	rs315690	A	G	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	25370962	rs315689	A	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	25382216	rs315676	C	G	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	25391584	rs186408	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	25407356	rs3756202	A	G	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	25667963	rs139644852	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	25672477	.	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	25673103	rs112592809	TGG	T	1468.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	25673111	rs113447948	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	25673231	rs112461275	T	G	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr4	25674905	.	TCACA	T	894.73	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	25674911	.	G	GAGGGA	894.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	25674913	rs62409436	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	25758580	rs4401441	G	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	25759109	rs11352729	CT	C	483.94	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,31:0.89:35
chr4	25767119	rs116461027	T	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	25769135	rs2290577	T	C	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	25780891	rs4697619	A	G	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	25790077	rs9985515	G	A	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	25792232	.	AGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAG	A	484.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.02;QD=40.39;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	25831558	rs35501267	G	GA	562.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr4	25836759	rs10007181	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	25837082	rs13434986	T	G	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	25915648	rs2305669	G	A	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	26122624	.	A	AAGAGGG	1730.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.51;QD=48.08;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	26241366	rs200509512	G	GGGAGA	2135.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.774;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.56;MQRankSum=1.116;QD=37.47;ReadPosRankSum=0.412;SOR=0.420;set=HC	GT:AD:AF:DP	1/1:2,55:0.96:57
chr4	26322759	rs113697915	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	26364300	rs13116873	C	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	26387959	rs56122711	AT	A	412.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.635;QD=13.76;ReadPosRankSum=1.557;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr4	26407681	rs3109839	A	G	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	26417136	rs2270226	T	C	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	26615982	rs260954	C	T	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	26673761	rs9997999	T	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	26673787	rs7691219	A	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	26719569	rs34600164	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	26737063	rs33992685	C	CT	660.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr4	26862546	.	CTT	C,CT	961.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.212;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.609;QD=11.59;ReadPosRankSum=-2.067;SOR=0.482;set=HC	GT:AD:AF:DP	1/2:12,26,45:0.31,0.54:83
chr4	27000995	rs6822297	A	G	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	27004011	rs10028164	G	A	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	27022800	rs10031905	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	30132766	rs34540632	ATG	A	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.217;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr4	30222333	.	C	CAT	98.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr4	30279742	rs199704978	T	C	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.10;QD=41.98;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	30279745	rs61794114	G	A	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.10;QD=42.60;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	30279789	rs61794115	A	C	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.22;QD=43.81;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	30499091	.	G	T	205.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	31031755	rs139430988	T	TTGTGTGTGTGCA	3267.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.46;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	31116254	rs71190493	A	AACAC	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.48;QD=30.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	36081878	rs4833069	C	T	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr4	36109409	rs7688562	C	G	283.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	36123024	rs1397423	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	36130099	rs6148397	T	TACAC	993.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=49.69;ReadPosRankSum=0.927;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr4	36130375	rs5857473	TA	T	1444.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	36149025	rs1567483	G	A	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	36149113	rs1567484	C	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	36152584	rs13148785	G	T	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	36214744	rs114642723	G	A	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	36258197	rs7686575	T	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	36292018	rs1995319	T	A	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	36340753	rs9654132	G	A	5947.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	36340812	rs17460427	C	G	6228.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	36428048	rs6841938	G	A	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	37247021	rs892825	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	37445315	rs4634233	C	A	7022.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr4	37445868	rs78086173	G	A	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	37590570	rs2279994	G	A	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	37592128	rs2973275	G	A	5972.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr4	37592674	rs937941	T	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	37666995	rs1221653	T	C	4919.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	37828175	rs2059484	T	C	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	37831850	rs2911907	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	37857106	rs6531590	G	A	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	37857166	rs6842360	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	37857342	rs11554509	G	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	37873692	rs28714373	T	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	37922307	rs2925957	G	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	37962186	rs6811863	G	C	6754.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	38016395	rs10501	T	G	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	38022087	rs10015663	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	38023302	rs34119528	C	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	38047545	rs6845120	A	G	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	38053788	rs58659939	CTGTGTGTGTGTG	CTG,C	1404.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=84;set=Intersection	GT:AF:DP	1/1:0.91:68
chr4	38062233	rs1364953	T	A	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	38091800	rs2303422	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	38774785	rs10776482	A	G	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	38774889	rs4129009	T	C	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr4	38775040	rs10776483	A	G	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	38776107	rs11096955	T	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	38776180	rs11096956	C	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	38776491	rs11096957	T	G	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	38776925	rs138645932	T	C	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	38798648	rs5743618	C	A	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	38798935	rs5743614	C	T	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.57;QD=28.13;SOR=1.518;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	38799710	rs4833095	T	C	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	38830350	rs5743810	A	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	38916465	rs4563504	A	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	38930985	rs35369040	T	TAA,TAAA	2847.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.34;ReadPosRankSum=1.694;SOR=0.992;set=HC	GT:AD:AF:DP	1/2:2,96,24:0.79,0.20:122
chr4	38930995	rs58035134	C	A	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	38931097	rs13150445	A	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	38932922	rs2291493	C	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	38933726	rs4833106	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	38942697	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.859;QD=0.92;ReadPosRankSum=1.584;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:41,15:0.27:56
chr4	39046586	rs111344840	CA	C	609.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	39046651	rs76308346	C	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	39064126	rs2711942	G	C	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	39064162	rs2711941	A	C	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	39065091	rs2711940	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	39094738	rs2566149	G	A	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	39104837	rs35745478	CTG	C	401.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	39109399	rs12508577	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	39114929	rs3796510	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	39114945	rs3839126	A	AG	306.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	39116775	rs10026775	A	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	39116911	rs3733276	T	C	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr4	39117103	rs3733277	G	A	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr4	39122577	rs3733274	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	39122697	rs3733275	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	39128101	rs7694760	A	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	39187522	rs6839511	G	T	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=-0.576;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:15,57:0.79:72
chr4	39205365	rs1451817	C	T	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr4	39217352	rs3733287	A	G	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	39242111	rs9998591	C	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	39279671	.	CA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=0.82;ReadPosRankSum=0.748;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr4	39279907	rs2276888	A	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	39302029	rs2066786	T	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	39343940	rs2306596	C	A	5436.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	39353122	rs4975007	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	39448542	rs7685429	C	G	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr4	39450229	rs4975017	C	A	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	39456392	rs1463478	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	39457870	rs3216720	T	TG	2279.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	39458051	rs2125313	A	G	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	39459724	rs2687958	T	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	39460490	rs2276890	C	G	6742.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	39472842	rs2125314	T	A	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.890;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	39472946	rs67611743	CT	C	903.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.669;QD=9.22;ReadPosRankSum=-0.329;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,75:0.77:98
chr4	39478946	rs11934814	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	39501647	rs58175625	C	CA	51	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	39501722	rs200660972	CAAAA	C,CA	1375.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=30.57;SOR=1.432;set=HC	GT:AD:AF:DP	1/2:2,14,29:0.31,0.64:45
chr4	39507524	rs11290546	TA	T	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.148;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	39511530	rs71645104	T	TA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.454;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.309;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:72,22:0.23:94
chr4	39606533	rs73240622	A	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	39700173	rs1055582	C	T	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	39747536	rs302931	A	G	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	39757480	rs11389468	A	AT	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	39827804	.	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.507;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr4	39851058	.	CA	C	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.698;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr4	39891783	.	T	G	41.77	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	39918635	rs71194939	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.174;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr4	40044833	rs28550618	C	A	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	40045340	rs17439810	G	C	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr4	40045727	rs1704151	T	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	40108750	rs1704154	C	T	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	40115239	rs4974962	A	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	40121562	rs794001	G	A	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	40350763	rs10029872	T	C	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	40356422	rs10009228	A	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	40428010	rs278981	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	40810747	rs2261167	A	G	7365.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	40895552	rs6447505	G	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	40937219	rs5857759	GA	G	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.990;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.507;QD=13.24;ReadPosRankSum=0.516;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:11,51:0.82:62
chr4	41015823	rs2292234	G	A	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr4	41015899	rs4861358	C	T	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr4	41607754	rs11943304	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	41611575	rs1105886	A	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	41615249	rs66955637	A	AT	321.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	41615690	rs13146318	T	A	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	41629036	rs5857808	G	GGTGT	500.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr4	41689700	.	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.674;QD=3.34;ReadPosRankSum=-0.310;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	41691709	rs77420897	T	C	4727.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr4	41984118	rs2660320	C	T	10191.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr4	41985101	rs2660332	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	41992677	rs2581434	C	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	42003671	rs1047626	A	G	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	42003835	rs2581453	C	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	42020142	rs2581423	A	G	894.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.55;ReadPosRankSum=-0.310;SOR=0.306;set=HC	GT:AD:AF:DP	1/1:1,37:0.97:38
chr4	42020347	rs2581422	A	G	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	42022464	rs15857	C	A	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	42024982	rs13107768	A	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	42025049	rs3213766	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	42025207	rs3213767	A	G	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	42040947	rs12641900	C	T	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	42051257	rs7684837	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	42051608	rs4241696	T	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	42065269	rs3804190	A	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	42069029	rs12643893	T	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	42069331	rs11409064	C	CA	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	42400112	rs11733156	G	T	2719.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	42445734	rs41265687	G	A	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr4	42448789	rs35005173	T	TA	370.74	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr4	42571074	rs6845603	A	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.89;SOR=2.208;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	42582047	rs6447171	A	C	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	42592935	rs3833615	C	CA,CAA	2003.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.08;ReadPosRankSum=0.874;SOR=0.571;set=HC	GT:AD:AF:DP	1/2:5,78,22:0.74,0.21:105
chr4	42596461	rs77305935	TAC	T	351.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	42602606	rs6819419	A	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	42617935	rs10003317	A	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	42618021	rs113477520	T	TA	1349.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	42618138	rs10033628	A	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	42626659	rs201925680	GAA	G,GA	602.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.964;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.27;MQRankSum=0.364;QD=16.74;ReadPosRankSum=-0.035;SOR=0.811;set=HC	GT:AD:AF:DP	1/2:2,14,20:0.39,0.56:36
chr4	42627805	rs1460358	A	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	42639186	rs898500	A	G	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	42659028	rs12503784	T	C	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	42965170	rs201824235	A	T	5864.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	44295839	rs13117500	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	44295943	rs13145563	A	G	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	44652187	rs1113098	C	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	44682465	rs6447368	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	44684455	rs13117025	C	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	44684507	rs9291245	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	44685224	rs112232487	T	TA	592.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.82;QD=45.59;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	44685225	rs58659516	T	A	601.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.29;QD=42.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	44690320	rs1491304	A	T	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	44691795	rs11373408	T	TA,TAA	1302.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.070;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.475;QD=12.65;ReadPosRankSum=-0.025;SOR=0.560;set=HC	GT:AD:AF:DP	1/2:20,60,23:0.58,0.22:103
chr4	44696538	rs12641137	C	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	44699484	rs6851576	T	G	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	44699506	rs6821295	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	44700453	rs1547526	G	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	44709695	rs1491302	C	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	44712908	rs3749582	T	C	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	44713235	rs1124828	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	44719048	rs1873522	A	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	44720248	rs3792705	T	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	46125790	rs200105027	T	C	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.018;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	46263862	rs35496835	A	AG	2586.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	46263864	rs10938435	T	A	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	46390865	rs11503014	C	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	46994972	rs3215202	GA	G	1440.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:6,82:0.93:88
chr4	47033772	rs72259536	GCT	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-1.159;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:98,20:0.17:118
chr4	47322190	rs4482737	T	C	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	47408709	rs6289	A	G	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	47514685	rs33995001	C	T	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	47524961	rs12509973	T	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	47525009	rs5858076	T	A	2237.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=4.075;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.72;ReadPosRankSum=1.734;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:1,86:0.99:87
chr4	47560859	rs79884646	A	C	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	47582387	rs2351791	A	C	16279.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:2,621:1.00:623
chr4	47647052	rs61759692	G	A	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	47666981	rs17462881	A	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	47667064	rs11934749	T	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	47682174	rs10517195	A	G	10895.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr4	47839929	rs2289433	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	47853843	rs6822668	T	C	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr4	47880494	rs2289435	G	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	47881191	rs9997555	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	47886319	rs12510002	A	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=30.83;SOR=1.498;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	47886329	.	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.768;QD=1.55;ReadPosRankSum=0.403;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:51,16:0.24:67
chr4	47886541	.	C	T	1367.77	.	AC=2;AF=1.00;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	47887536	rs2053404	T	C	8146.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr4	47887991	rs6818556	G	A	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	47898491	rs6447592	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	47900186	rs145577149	CAAAT	C	1352.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	47901155	rs3057881	CAA	C	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.14;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	47901476	rs12651301	G	A	7700.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr4	47905158	rs2119204	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	47913127	rs4695306	C	T	253.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	47916233	.	G	GA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=6.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-0.391;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr4	47916346	rs6826122	C	G	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	47944029	rs10709670	CA	C	796.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.303;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.338;QD=6.37;ReadPosRankSum=-1.931;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:49,76:0.61:125
chr4	47945455	rs6819506	C	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	47951945	rs1972883	G	A	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr4	47953515	rs3845160	A	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	47973110	rs7693648	G	A	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.89;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	47973234	rs7677851	T	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	48069696	rs2230594	G	C	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	48069725	rs9996535	G	A	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	48073501	rs906486	G	T	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	48081896	rs11358014	CA	C	2153.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:3,111:0.97:114
chr4	48082208	rs2352590	T	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	48088446	rs6858664	A	G	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	48107096	rs6825925	T	A	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	48115264	rs7658300	C	T	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr4	48139565	rs2661529	C	A	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	48143201	rs17470892	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	48147309	rs17574371	T	C	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	48147612	rs2661547	T	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	48148435	rs3749503	G	A	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	48158524	rs882715	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	48165888	rs139950746	CTTA	C	810.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	48169769	rs7689953	A	G	11602.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr4	48170669	rs2243840	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	48343693	rs1876834	G	A	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr4	48344154	rs28464394	G	T	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	48372085	rs1466631	T	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	48381637	rs80318013	A	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	48381690	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.597;QD=1.77;ReadPosRankSum=0.117;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr4	48396496	rs4694894	C	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	48492434	rs10008444	G	C	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	48492769	rs74929644	A	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	48493237	rs79858408	G	A	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	48512702	rs73246029	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	48516970	rs7434721	C	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	48529683	rs11356838	TA	T	1004.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-0.059;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:11,72:0.87:83
chr4	48529733	rs4695385	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	48533148	rs6855022	C	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	48537603	rs3838234	T	TACACAC,TACACACAC	809.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/1:0.95:19
chr4	48537633	rs3838233	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	48558882	rs4694898	C	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	48573028	rs1507865	T	C	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	48577121	rs28558226	C	T	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr4	48582836	rs4695390	A	T	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	48582909	rs4695391	G	A	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	48583061	.	AT	A	36.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.61;ReadPosRankSum=0.921;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	48596036	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-0.475;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr4	48596195	rs78630567	TTATAAG	T	482.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	48607938	rs2940319	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	48611153	rs776603	A	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	48611639	rs5858122	G	GA	298.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=1.272;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr4	48625213	rs776579	C	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	48636595	rs796555	C	T	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	48655635	rs776580	T	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	48834896	rs4694906	C	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	48894981	rs2289065	G	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	48988450	rs3747690	C	A	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	48988705	rs2572344	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	48990476	rs10537617	CT	C	1444.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.682;SOR=0.325;set=HC	GT:AD:AF:DP	1/1:17,98:0.85:115
chr4	48994138	rs28678278	G	T	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	49063872	rs1051447	C	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	52714354	rs10673605	A	ATTTC	2488.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr4	52714511	rs6851073	C	G	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr4	52744145	rs3215145	T	TAGAC	519.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr4	52752812	rs2271046	A	T	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:40,39:0.49:79
chr4	52753118	rs7665231	G	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr4	52765720	rs2271045	T	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr4	52896050	rs225170	A	G	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr4	52927113	rs999634	C	A	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:99,79:0.44:178
chr4	52927229	rs784944	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr4	52928352	rs34989037	GT	G	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.441;QD=6.95;ReadPosRankSum=0.059;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:22,61:0.73:83
chr4	52936206	rs201895827	TTA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.10;ReadPosRankSum=-1.368;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr4	52938243	rs3860707	T	C	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.07;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	52938243	.	TCC	CCC,CCT	1501	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=130,51;NR=79,31;PP=1501,1096;QD=7.34818761984;SC=AGAAGCCATGTCCGATTATAA;SbPval=0.54;Source=Platypus;TC=211;TCF=131;TCR=80;TR=209,82;WE=52938253;WS=52938233;set=Platypus	GT:AF:DP	0/1:0.99:211
chr4	52938245	rs79258516	C	T	2110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-2.833;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:139,104:0.43:243
chr4	52942779	rs55839120	G	T	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	52945207	rs12641673	G	A	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	52945799	rs7689145	C	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	52946161	rs7657148	A	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	52951213	rs10556262	CT	C	1072.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.049;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.893;QD=9.93;ReadPosRankSum=1.275;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:23,85:0.79:108
chr4	52960908	rs3214049	T	A	6064.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	53463763	rs7676586	G	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr4	53492522	rs73248669	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr4	53495992	rs12509591	T	C	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:118,146:0.55:264
chr4	53610272	rs61731317	C	T	7201.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:397,353:0.47:750
chr4	53611668	rs3733504	T	C	2963.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:149,143:0.49:292
chr4	53611701	rs3733503	G	C	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:101,91:0.47:192
chr4	53751932	rs2306600	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:141,97:0.41:238
chr4	53822307	rs301093	A	G	18208.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr4	54011526	rs7675987	A	G	12396.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr4	54245476	rs1471596	A	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	54250189	rs10012853	T	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	54280705	rs10719406	GA	G	868.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.087;QD=10.73;ReadPosRankSum=0.683;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:20,61:0.75:81
chr4	54292004	rs35792361	G	A	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:82,55:0.40:137
chr4	54310188	rs11722866	A	G	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	54310281	rs11723755	T	G	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	54310340	rs59279367	TA	T	1535.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	54325444	rs5858212	C	CTT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.495;QD=6.03;ReadPosRankSum=-0.221;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr4	54327235	rs3811785	T	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	54327584	rs3765158	A	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	54362150	rs6836800	G	A	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	54852693	rs201460622	CTTTTA	C	749.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	54876121	rs145864126	T	TA,TAA	128.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=117;set=Intersection	GT:AF:DP	0/1:0.27:109
chr4	54876132	rs4437313	C	A	1953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=-0.080;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:21,94:0.82:115
chr4	54915527	rs75090248	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr4	54930269	rs139920029	CAG	C	1512.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,42:0.51:82
chr4	54966667	rs3194383	C	T	25626.77	.	AC=2;AF=1.00;AN=2;DB;DP=933;set=Intersection	GT:AD:AF:DP	1/1:0,930:1.00:930
chr4	54966830	rs13144341	G	A	13749.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:2,490:1.00:492
chr4	54966919	rs1132998	T	C	19627.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr4	54967214	rs6554148	C	T	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	54967709	rs2278142	C	A	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	55125058	rs2303430	A	T	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr4	55131001	.	T	TA	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.216;QD=1.06;ReadPosRankSum=1.248;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr4	55141055	rs1873778	A	G	14107.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr4	55146406	rs6148442	T	TTGTAGGTCCCCCAG	2199.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	55151711	rs2412559	C	A	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	55151958	rs3830355	T	TA	3948.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	55152284	rs4864872	T	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	55153837	rs7695657	A	G	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,89:0.98:91
chr4	55156380	rs4864506	G	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	55156400	rs2276948	A	G	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	55161254	rs3733540	C	T	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr4	55161391	rs7685117	T	C	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	55524304	rs999020	T	C	8514.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr4	55599268	rs55789615	C	T	4939.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:306,250:0.45:556
chr4	55599436	rs1008658	T	C	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:61,77:0.56:138
chr4	55946081	rs4421048	A	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	55948108	rs2412617	A	G	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	55955232	rs1531289	T	C	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr4	55955737	rs3217703	A	AT	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr4	55961159	rs2219471	T	C	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:120,142:0.54:262
chr4	55962545	rs3214870	T	TG	4728.73	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:183,164:0.47:347
chr4	55964101	rs6838752	T	C	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr4	55964565	rs3816584	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr4	55968053	rs7655964	A	C	3212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=-1.513;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:134,152:0.53:286
chr4	55970680	rs13109660	G	A	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:62,75:0.55:137
chr4	55971846	rs2305945	G	T	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr4	55972974	rs1870377	T	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=0.764;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:60,57:0.49:117
chr4	55976451	rs3828550	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	55976947	rs5858314	T	TA	269.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.25;ReadPosRankSum=-0.384;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chr4	55980239	rs7692791	C	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:138,148:0.52:286
chr4	56235931	rs819268	C	G	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:52,57:0.52:109
chr4	56262374	rs1128141	A	G	8485.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr4	56290496	rs6828454	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr4	56290558	rs11732723	C	T	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr4	56290573	rs6810483	T	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:99,91:0.48:190
chr4	56291479	rs7677952	C	T	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:169,106:0.39:275
chr4	56291528	rs7660517	T	C	3043.73	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:236,162:0.41:398
chr4	56291620	rs35154686	CAA	C	3730.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:106,98:0.48:204
chr4	56309992	rs3736544	A	G	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	56314759	rs146390682	GCA	G	485.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.13;ReadPosRankSum=0.517;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr4	56314761	.	A	G	772	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=3;MGOF=32;MMLQ=22;MQ=58.88;NF=11;NR=4;PP=772;QD=53.7847475031;SC=GCGCGCGCGCACGCGCGCGTG;SbPval=0.53;Source=Platypus;TC=28;TCF=21;TCR=7;TR=15;WE=56314785;WS=56314747;set=Platypus	GT:AD:AF:DP	0/1:13,15:0.54:28
chr4	56314766	.	CGCGTGTGTGT	C	352.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.825;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr4	56314768	.	C	CGCGCGT,CGCGCGTGT	51.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=32;set=Intersection	GT:AF:DP	0/1:0.25:28
chr4	56319088	rs4864996	A	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr4	56319105	rs2412647	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	56319350	rs11240	C	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:120,93:0.44:213
chr4	56320073	rs116690248	T	C	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr4	56322244	rs10529254	TG	T	1225.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr4	56329773	rs1522112	T	C	752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.366;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:40,39:0.49:79
chr4	56337041	rs3805151	T	C	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr4	56342326	rs9312661	G	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr4	56423002	rs71194590	G	GT	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr4	56428820	rs2279458	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr4	56458103	rs34299771	A	T	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:86,67:0.44:153
chr4	56458400	rs62310884	A	C	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:65,58:0.47:123
chr4	56465418	rs1387198	T	C	3535.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr4	56471404	rs1873090	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:72,49:0.40:121
chr4	56471433	rs1873091	A	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:112,87:0.44:199
chr4	56471551	rs3805382	A	G	3632.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:248,191:0.44:439
chr4	56473359	rs2412666	T	C	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	56475338	rs3805383	G	A	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:284,261:0.48:545
chr4	56475447	rs17725163	T	C	2716.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:100,123:0.55:223
chr4	56502178	rs3792703	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr4	56697597	rs6848009	T	A	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	56726839	rs11734942	T	A	686.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr4	56734701	rs3213948	C	T	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	56736773	rs77829116	C	T	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr4	56737900	rs73238379	T	C	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr4	56738144	rs74862929	A	T	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:94,86:0.48:180
chr4	56738812	rs73238381	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.23;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	56756531	rs2290016	T	C	9835.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr4	56757463	rs17086121	C	T	3394.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:158,166:0.51:324
chr4	56763170	rs10014018	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	56770490	rs141812928	C	CT	1543.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:82,101:0.55:183
chr4	56770708	rs17086150	A	C	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	56835413	rs1811473	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr4	56840846	rs2290014	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr4	56874517	rs3214045	A	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr4	56877725	rs11363021	GT	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.92;ReadPosRankSum=1.245;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr4	56878193	rs11724411	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr4	57167324	rs74499702	AT	A	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr4	57167507	rs58767323	C	G	4527.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:197,218:0.53:415
chr4	57176710	rs13123803	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	57176955	.	T	TC	2986	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=9;HapScore=2;MGOF=8;MMLQ=24;MQ=59.58;NF=1;NR=150;PP=2986;QD=20;SC=ACTTTCATCTTCCCCCCCCCT;SbPval=0.64;Source=Platypus;TC=293;TCF=2;TCR=291;TR=151;WE=57176975;WS=57176945;set=Platypus	GT:AD:AF:DP	1/1:142,151:0.52:293
chr4	57176964	rs371414283	CT	C	1417.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.220;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=7.46;ReadPosRankSum=1.236;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:81,109:0.57:190
chr4	57176965	rs5858374	T	C	558.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.606;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=5.248;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.466;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:123,69:0.36:192
chr4	57176966	rs60121364	T	C	939.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=9.110;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.743;SOR=3.159;set=HC	GT:AD:AF:DP	0/1:102,93:0.48:195
chr4	57180473	rs6823339	C	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr4	57180563	rs59615456	G	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr4	57180576	rs138358443	C	CGGAGCGGAGGGAGCGGAG	626.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr4	57180616	rs11723379	G	C	404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=5.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-0.859;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr4	57181629	rs61750793	C	T	5284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=1.416;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:275,247:0.47:522
chr4	57181632	rs7672073	G	C	18859.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.976;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.06;ReadPosRankSum=0.859;SOR=0.248;set=HC	GT:AD:AF:DP	1/1:1,522:1.00:523
chr4	57181995	rs3796547	C	T	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:232,195:0.46:427
chr4	57182647	rs3822003	G	A	9237.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:365,426:0.54:791
chr4	57182758	rs28559894	C	T	4373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.225;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:180,207:0.53:387
chr4	57189498	rs2292985	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:58,55:0.49:113
chr4	57190356	rs7695701	G	A	3436.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:197,172:0.47:369
chr4	57193762	rs6826795	G	A	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr4	57194329	rs11733474	G	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr4	57194460	rs6811153	A	G	3729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=2.389;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:253,201:0.44:454
chr4	57194525	rs6834736	C	G	5224.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:256,257:0.50:513
chr4	57208955	rs9996468	A	T	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=-0.356;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr4	57215677	rs3796544	G	A	7596.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:375,366:0.49:741
chr4	57217340	rs7694439	T	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	57219523	rs6554347	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr4	57219592	rs6554348	G	A	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=0.829;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:74,61:0.45:135
chr4	57237683	rs6554354	G	A	5095.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:243,247:0.50:490
chr4	57269363	rs35136233	TA	T	4677.73	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:165,166:0.50:331
chr4	57269591	rs34121369	T	TA	2672.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:136,110:0.45:246
chr4	57269646	rs112538106	A	AAAAG	1613.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:71,46:0.39:117
chr4	57270197	rs7661712	T	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,29:0.50:58
chr4	57273840	rs11538098	C	G	8389.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:555,445:0.45:1000
chr4	57276619	rs2139512	G	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	57276739	rs2176785	G	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr4	57314905	rs11549976	A	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr4	57425443	rs7677956	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	57425469	.	CAA	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.537;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr4	57425520	rs76480778	A	AT	2576.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:4,116:0.97:120
chr4	57458942	rs6858341	C	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	57686807	.	G	GT	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.099;QD=4.64;ReadPosRankSum=-2.005;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:51,39:0.43:90
chr4	57796119	rs139443175	C	T	6015.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:351,303:0.46:654
chr4	57797100	rs2227902	G	T	4744.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:248,232:0.48:480
chr4	57797217	.	GGAGCTGTCTCCTCCCATGGAGGTGGTCCAGAAGGAGCCTGTTCAGATA	G	2011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.314;QD=11.18;ReadPosRankSum=1.370;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:105,75:0.42:180
chr4	57797253	.	G	A	603	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MMLQ=27;MQ=59.23;NF=28;SC=TCCAGAAGGAGCCTGTTCAGA;Source=Platypus;TCF=85;WE=57797273;set=Platypus	GT:AD:AF:DP	1/0:122,54:0.31:176
chr4	57797308	rs2227903	A	C	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr4	57830501	rs9996331	G	A	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,79:0.51:156
chr4	57843320	rs4865167	A	G	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:4,299:0.99:303
chr4	57845091	rs2276896	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.378;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:51,40:0.44:91
chr4	57861096	rs71889795	GA	G	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.306;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr4	57861117	rs1713951	G	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	57861358	rs2293175	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr4	57871400	rs41553919	AT	A	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr4	57871750	.	T	TTC	355.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.731;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.133;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:91,39:0.30:130
chr4	57876955	rs1718878	G	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr4	57881715	rs1713982	G	A	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:56,73:0.57:129
chr4	57881862	rs28719609	T	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr4	57883175	rs1718866	G	C	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	57886946	rs1718831	T	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr4	57887150	rs2271806	C	T	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:213,168:0.44:381
chr4	57888510	rs1718830	T	C	2368.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:117,122:0.51:239
chr4	57889332	rs1718862	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	57889677	rs1056364	C	T	3057.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:180,153:0.46:333
chr4	57891239	rs6843644	G	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	57897570	rs12621	G	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-1.972;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:35,40:0.53:75
chr4	57898729	rs2271807	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:156,127:0.45:283
chr4	57899602	rs2271808	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr4	57976487	rs11573021	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr4	62382943	rs335311	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr4	62383315	rs335312	G	C	33.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr4	62542879	rs1391319	G	C	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	62758251	rs7691112	A	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	62775479	.	A	ATGTGTGTG	387.74	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;QD=38.77;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	62778315	rs12503398	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	62800554	rs2305339	G	A	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.493;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:62,47:0.43:109
chr4	62800728	rs734644	T	C	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.495;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-1.290;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr4	62845388	rs1397547	G	C	5571.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	62845595	.	C	T	493.77	.	AC=1;AF=0.500;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	0/1:83,31:0.27:114
chr4	62861941	rs17226398	G	C	6245.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:132,291:0.69:423
chr4	62861964	rs56038622	A	T	6701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.89;ReadPosRankSum=0.111;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:143,307:0.68:450
chr4	65142710	rs1483713	C	T	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.331;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr4	65142835	rs1483712	G	T	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.812;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	65145955	rs1483711	T	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	65145966	rs5858871	T	TAA	1316.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	65146700	rs10012755	A	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	65146711	rs1483709	T	C	1423.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	65147404	rs10001161	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	65165661	rs11935568	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	65165849	rs13139627	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.388;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr4	65180308	rs35642943	GGTGTGTGTGTGT	G,GGTGT	1718.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.81;SOR=1.209;set=HC	GT:AD:AF:DP	1/2:0,22,26:0.46,0.54:48
chr4	65240805	rs6551827	A	T	217.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	65240822	rs7683730	A	G	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr4	65240967	rs72614757	A	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	66189753	rs111537275	C	CT	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.150;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr4	66218728	rs3792649	C	T	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=6.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.940;SOR=0.329;set=HC	GT:AD:AF:DP	0/1:70,48:0.41:118
chr4	66218917	rs376834421	GTA	G	81.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,7:0.16:43
chr4	66218980	rs5858955	G	GAAAT	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	66286088	rs6551921	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	66286100	rs6551922	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	66286113	rs138755728	G	GA	576.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.442;QD=18.02;ReadPosRankSum=-1.454;SOR=0.301;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr4	66286414	rs6551923	T	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	66468046	rs5858973	TA	T	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	66509194	rs4343775	T	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	67142620	rs73239138	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr4	68214260	rs7659344	C	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	68360694	rs2632453	T	C	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	68360955	rs2646282	A	G	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=-1.466;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,60:0.79:76
chr4	68371174	rs41278559	A	G	189.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr4	68372830	rs114673396	T	C	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	68376791	rs77801020	C	T	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:81,121:0.60:202
chr4	68410009	rs17625547	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	68416393	rs11436062	T	TA	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.452;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.800;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr4	68436883	rs13111555	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	68436975	rs116421847	T	C	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.524;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr4	68442968	rs11556614	A	G	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	68447040	rs11556615	C	T	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:41,100:0.71:141
chr4	68447200	rs2242331	A	G	2032.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:222,119:0.35:341
chr4	68449269	rs144427229	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-0.989;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr4	68458937	rs3816821	G	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr4	68489007	rs3830312	C	CA	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.404;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr4	68490019	rs10454253	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr4	68490044	rs10454252	C	T	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	68490097	rs4860854	T	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr4	68490650	rs12508337	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,43:0.73:59
chr4	68492060	rs34742870	A	G	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=-0.058;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:15,28:0.65:43
chr4	68492244	rs35602179	T	TAA	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr4	68492301	rs12506872	A	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	68496080	rs354866	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	68497333	rs4146407	G	A	96.85	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	68497597	rs77075932	C	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr4	68500171	rs10008910	A	G	673.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:88,41:0.32:129
chr4	68514739	rs3849642	T	C	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:25,56:0.69:81
chr4	68515054	rs6840867	A	G	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr4	68531131	rs35765874	G	GT	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	68534392	rs10010188	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:53,14:0.21:67
chr4	68539539	rs112890671	AT	A	185.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr4	68543240	rs17571825	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr4	68544318	rs28483797	C	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	68547165	rs11394457	T	TA	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr4	68547809	rs34482936	A	ATAC	4356.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	68562176	rs10660788	T	TACAC	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	68562236	rs10573467	TAC	T	543.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr4	68562365	rs17572160	A	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr4	68566689	rs78578320	G	A	1439.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:217,95:0.30:312
chr4	68566878	rs377196781	A	AG	2430.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr4	68566891	rs34378415	TG	T	4657.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	68567025	rs28653581	T	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.164;QD=1.90;ReadPosRankSum=-1.284;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:101,22:0.18:123
chr4	68586267	rs17635222	G	C	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.235;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:73,36:0.33:109
chr4	68586315	rs13124793	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr4	68586335	rs72643632	TA	CG	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;JOINED;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr4	68619601	rs4986942	G	A	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:30,77:0.72:107
chr4	68700956	rs6824984	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	68780253	rs1371933	G	A	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	68780399	rs1371932	A	G	10655.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr4	68780512	rs10025303	C	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	68784774	rs353163	T	C	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr4	68788694	rs353159	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	68788719	rs2119382	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	68810246	rs1370840	G	A	1830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.11;ReadPosRankSum=-0.538;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:25,82:0.77:107
chr4	68810421	rs28437478	T	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	68812283	rs11930532	C	T	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.503;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:145,50:0.26:195
chr4	68812455	rs6812971	A	T	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	68829109	rs977728	C	T	7077.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:139,321:0.70:460
chr4	68829207	rs6552134	G	A	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:72,29:0.29:101
chr4	68904558	rs17648228	C	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.853;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=-2.331;QD=3.56;ReadPosRankSum=1.287;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:186,57:0.23:243
chr4	68904637	rs6552141	A	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:152,57:0.27:209
chr4	68904834	rs9999589	T	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.839;QD=2.88;ReadPosRankSum=1.648;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:95,27:0.22:122
chr4	68919617	rs10018943	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:96,37:0.28:133
chr4	68928537	rs3819257	G	A	5533.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:123,252:0.67:375
chr4	68928740	rs1837215	G	A	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:112,58:0.34:170
chr4	68934306	rs10004522	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr4	68935672	rs12504120	G	T	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:24,38:0.61:62
chr4	68937946	.	A	AAT	67	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=9;HapScore=4;MGOF=44;MMLQ=28;MQ=51.96;NF=2;NR=0;PP=67;QD=39.5;SC=TTCCAAAAAAAAAATATATAT;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=68937956;WS=68937936;set=Platypus	GT:AD:AF:DP	1/0:1,2:0.67:3
chr4	68937948	.	A	T	72	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=9;HapScore=4;MGOF=44;MMLQ=28;MQ=53.67;NF=4;NR=0;PP=72;QD=26.6928031368;SC=CCAAAAAAAAAATATATATAT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=68937956;WS=68937936;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	68938002	rs12501405	G	A	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	68956422	rs57121360	T	A	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr4	68956498	rs13115830	C	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	68964768	rs12503814	G	C	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:52,124:0.70:176
chr4	69057073	rs4860284	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr4	69078113	rs4463136	T	C	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.596;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:210,87:0.29:297
chr4	69083563	rs10008636	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.048;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr4	69094507	rs2319797	T	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.713;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:123,31:0.20:154
chr4	69094575	rs2319796	T	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	69094926	rs63181060	TTAAA	T	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr4	69095197	rs12331141	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr4	69097150	rs5859125	TA	T	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	69098006	rs6552175	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=0.068;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	69100137	rs35624784	G	GA	845.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr4	69100396	rs13151732	G	A	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr4	69416353	rs62316988	T	A	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=6.689;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.597;QD=3.77;ReadPosRankSum=1.353;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:219,76:0.26:295
chr4	69416556	rs13102139	T	C	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:142,137:0.49:279
chr4	69417570	rs28374627	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-1.076;QD=3.56;ReadPosRankSum=-1.993;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr4	69433714	rs34664906	C	T	21409.77	.	AC=2;AF=1.00;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	1/1:0,800:1.00:800
chr4	69434217	rs28672900	G	A	19682.77	.	AC=2;AF=1.00;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	1/1:0,758:1.00:758
chr4	69528594	rs116368924	T	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.60;MQRankSum=-1.036;QD=8.15;ReadPosRankSum=0.674;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	69886151	rs11730623	A	T	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	69978578	.	T	A	469.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr4	70079838	rs4694697	T	C	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr4	70146704	rs7689398	G	A	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr4	70283908	rs2642841	T	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	70288954	rs2736507	C	T	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.14;QD=27.18;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	70288981	rs2736505	C	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	70346564	rs13142440	GA	TT	6264.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;JOINED;set=Intersection	GT:AD:AF:DP	0/1:53,153:0.74:206
chr4	70346680	rs28419590	G	A	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:36,104:0.74:140
chr4	70346711	rs28679647	G	C	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	70352164	rs41297427	A	AATTATC	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	70352212	rs146944026	ATTTTAT	A	950.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr4	70355211	rs1845555	T	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	70355380	rs28542932	T	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr4	70359694	rs7441743	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=1.356;SOR=0.023;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	70360752	rs13104687	C	T	3306.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:57,146:0.72:203
chr4	70455478	rs2288741	G	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr4	70465153	rs3775782	A	T	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:160,77:0.32:237
chr4	70501374	rs145673753	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.442;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.05;ReadPosRankSum=1.122;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr4	70501451	rs6811810	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=0.663;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr4	70501545	rs28560191	C	A	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	70512773	rs41292307	A	G	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:176,86:0.33:262
chr4	70512801	rs55864295	A	G	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:185,90:0.33:275
chr4	70513139	rs1347046	C	T	8746.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr4	70592790	rs2292092	G	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.180;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:89,50:0.36:139
chr4	70599073	rs1847366	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:65,44:0.40:109
chr4	70615308	rs1503723	G	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.545;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:22,6:0.21:28
chr4	70620708	rs2134668	G	A	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	70707945	rs1220724	A	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	70713520	rs1220702	G	C	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:48,120:0.71:168
chr4	70719866	rs11249468	T	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:93,47:0.34:140
chr4	70723196	rs11249470	A	G	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr4	70803380	rs1220860	T	A	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	70805829	.	TCACA	T,TCA	1125.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=51.17;SOR=1.931;set=HC	GT:AD:AF:DP	1/2:0,8,14:0.36,0.64:22
chr4	70805833	rs201926356	A	T	328.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.94;ReadPosRankSum=2.021;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	70805835	.	A	T	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=-2.060;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	70811806	rs1237375	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	70898953	rs1136515	C	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	70899037	rs776852	T	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	70921164	rs2271643	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.74;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	70921164	.	TT	CC,CT	331	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=19,27;NR=4,5;PP=331,178;QD=16.7159945592;SC=AACACTTGTATTGTCATTCTC;SbPval=0.6;Source=Platypus;TC=33;TCF=27;TCR=6;TR=23,32;WE=70921173;WS=70921154;set=Platypus	GT:AF:DP	0/1:0.70:33
chr4	70921165	rs72651134	T	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.937;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.21;ReadPosRankSum=0.568;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr4	70921337	rs2271644	G	A	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	70934964	rs4694266	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	70944452	rs1399812	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	70947318	rs2063819	C	T	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr4	70947376	rs2063820	T	A	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	70948533	rs7675265	T	C	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	71008313	rs777398	G	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	71008375	rs777399	T	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	71009033	rs777400	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	71020205	rs1709273	C	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	71021888	rs1709274	C	T	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	71024010	rs111347259	T	TACAA	2244.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	71024099	rs1612460	A	G	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,102:0.65:158
chr4	71065943	rs34093806	GA	G	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.730;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr4	71067317	rs4694273	C	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:37,9:0.20:46
chr4	71114956	rs1048152	G	T	3243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.567;ClippingRankSum=0.000;DB;DP=772;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.097;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:563,206:0.27:769
chr4	71201388	rs1351419	C	T	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr4	71227802	rs1842478	A	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr4	71227998	rs1842477	A	T	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	71228001	rs1842476	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	71232430	rs10024123	T	C	27604.77	.	AC=2;AF=1.00;AN=2;DB;DP=1053;set=Intersection	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr4	71232701	rs6853742	C	T	18708.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr4	71250308	rs2233586	T	A	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.92;QD=28.60;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	71250399	rs7676909	A	G	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	71255370	rs7674958	A	T	12351.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr4	71255593	rs2988	G	A	30541.77	.	AC=2;AF=1.00;AN=2;DB;DP=1133;set=Intersection	GT:AD:AF:DP	1/1:1,1128:1.00:1129
chr4	71255767	rs3733493	A	G	11130.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr4	71275012	rs1352689	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	71384488	rs28674149	C	T	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.271;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:112,37:0.25:149
chr4	71384579	rs35692424	G	A	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-1.949;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:300,99:0.25:399
chr4	71388379	rs28754427	A	T	465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.827;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:77,28:0.27:105
chr4	71388394	rs4123809	T	G	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.904;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=3.918;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.459;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:102,35:0.26:137
chr4	71390795	rs17733287	C	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.068;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-0.290;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr4	71396989	rs17676820	C	T	966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.453;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:126,58:0.32:184
chr4	71398064	rs3852099	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr4	71457954	.	T	TTTCTAATC	986.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=12.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-1.746;SOR=1.658;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr4	71457984	rs142316020	AGCAAGTCCCAC	A	1878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=11.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=1.817;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:173,58:0.25:231
chr4	71467443	rs71599963	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr4	71467593	rs28538959	A	C	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:172,69:0.29:241
chr4	71467697	rs79200974	T	C	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:36,95:0.73:131
chr4	71467710	rs13115627	A	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.769;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr4	71468249	rs35870385	A	T	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;MQ=61.19;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	71468345	rs141384720	CAGG	C	1207.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr4	71468396	rs35859385	A	G	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr4	71468444	rs145723122	TTTA	T	698.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,21:0.30:69
chr4	71468583	rs142022847	AT	A	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr4	71468611	rs34230455	C	T	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr4	71468922	rs35850072	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr4	71468985	rs35266919	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr4	71469529	rs7439194	C	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr4	71469556	rs7439191	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:33,75:0.69:108
chr4	71469604	rs7439186	C	T	3106.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:67,139:0.67:206
chr4	71521931	.	CA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.339;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr4	71691743	rs6814981	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	71698183	rs4694081	C	A	9339.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr4	71704965	rs3775728	C	T	14612.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr4	71705262	rs6813092	A	G	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	71768079	rs1871048	C	G	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	71864013	rs6446988	A	G	111.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	71892513	rs1486271	A	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	71894321	rs35880082	C	CTTTT	724.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.63;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	71894476	rs11394166	A	AT,ATT	610.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=-1.968;SOR=0.902;set=HC	GT:AD:AF:DP	1/2:10,24,16:0.48,0.32:50
chr4	71894563	rs12513202	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.34;ReadPosRankSum=0.389;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr4	71895260	rs4643786	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	72306223	rs34445073	C	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr4	72313411	rs34373561	C	T	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:85,150:0.64:235
chr4	72316822	rs10022349	C	T	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	72397710	rs3775162	C	T	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	72397964	rs10446504	T	C	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	72411967	rs4694097	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	72423624	rs1453474	C	T	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	72425863	rs1453458	C	T	6312.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	72429452	rs2290397	G	A	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	72432991	rs965606	A	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	72433759	rs1453453	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	72618296	rs9016	T	C	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	72618334	rs7041	A	C	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	72620865	rs71673486	C	CTATTTATT	1257.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:2,44:0.96:46
chr4	72620893	.	T	TTATTTATA	1047	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=5;HapScore=1;MGOF=11;MMLQ=28;MQ=60.54;NF=1;NR=28;PP=1047;QD=36.3793103448;SC=ATTTATTTATTTTTTGTGACA;SbPval=0.5;Source=Platypus;TC=42;TCF=1;TCR=41;TR=29;WE=72620901;WS=72620883;set=Platypus	GT:AD:AF:DP	1/0:13,29:0.69:42
chr4	72622403	rs222033	A	C	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	72634975	rs222016	G	A	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:55,129:0.70:184
chr4	72934539	rs9884712	A	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	72934578	rs11444220	C	CT	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	72934632	rs9884478	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	73012833	rs141010660	T	C	5468.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:127,243:0.66:370
chr4	73175048	rs12501859	G	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr4	73175093	rs10024487	C	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	73181637	rs139921635	G	T	6186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.432;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:146,287:0.66:433
chr4	73414286	rs788908	C	T	3665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-0.026;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:62,166:0.73:228
chr4	73433122	rs33925079	GA	G	4304.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:76,143:0.65:219
chr4	73433315	rs6830556	G	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	73434379	rs5859330	GT	G	3183.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	73615956	rs1350836	C	T	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=1.508;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:259,94:0.27:353
chr4	73930889	rs71215480	CT	C	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.184;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:19,26:0.58:45
chr4	73930893	rs2126115	T	G	118.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=6.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.591;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr4	73930894	rs201334203	T	G	158.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.922;SOR=0.405;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr4	73933633	.	A	T	1159	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=39;MMLQ=28;MQ=59.36;NF=29;NR=5;PP=1159;QD=35.1109180161;SC=CCAAAACTACAGAATACTCAA;SbPval=0.8;Source=Platypus;TC=45;TCF=36;TCR=9;TR=34;WE=73933641;WS=73933632;set=Platypus	GT:AD:AF:DP	0/1:11,34:0.76:45
chr4	73933671	rs68113340	ATGTGTG	A	3969.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.92;QD=33.36;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:7,112:0.94:119
chr4	73942678	rs2306058	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:40,80:0.67:120
chr4	73991006	rs6822576	T	C	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr4	74010555	rs375888439	TA	T	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.521;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr4	74014809	rs1534450	A	C	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	74124071	.	TCCGCCTCCACCG	T	7429.73	.	AC=1;AF=0.500;AN=2;DP=316;set=Intersection	GT:AD:AF:DP	0/1:89,189:0.68:278
chr4	74281012	rs6832260	T	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr4	74285239	rs962004	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.621;QD=4.45;ReadPosRankSum=-0.891;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:109,44:0.29:153
chr4	74285758	rs2236766	G	T	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.143;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:26,57:0.69:83
chr4	74285823	rs2236767	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:34,74:0.69:108
chr4	74302071	rs3796678	T	A	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr4	74302151	rs3796677	A	T	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	74302870	rs16849384	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:47,67:0.59:114
chr4	74304118	rs6446932	T	A	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	74310844	rs2298839	A	G	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-1.153;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:119,62:0.34:181
chr4	74313169	rs7667494	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	74318330	rs4235117	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	74349867	rs11939341	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr4	74352916	rs2071098	A	G	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr4	74354632	rs13107306	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr4	74357851	rs11733262	A	G	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr4	74361254	rs10212657	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.416;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.318;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr4	74363282	rs1158101	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	74364992	rs67050083	CT	C	1250.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=1.684;QD=11.17;ReadPosRankSum=-0.664;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:19,93:0.83:112
chr4	74367706	rs1159624	C	T	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	74442349	rs17804499	G	C	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-2.094;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:36,92:0.72:128
chr4	74447452	rs1247670	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.517;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:145,46:0.24:191
chr4	74447510	rs1247671	A	C	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=4.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.441;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:162,51:0.24:213
chr4	74447800	rs2008288	A	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr4	74448078	rs148589925	ATCT	A	481.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr4	74448134	rs141070355	TTTTG	T	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.97;ReadPosRankSum=-1.019;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	74450830	rs7682201	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr4	74451073	rs12507775	A	G	5855.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:76,164:0.68:240
chr4	74451092	rs12508661	T	G	5114.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:56,128:0.70:184
chr4	74453656	rs10019146	G	A	6840.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:136,310:0.70:446
chr4	74453691	rs10011419	T	C	4278.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:101,194:0.66:295
chr4	74453782	rs10009048	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr4	74464285	rs10632092	T	TTG	1718.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:12,55:0.82:67
chr4	74464443	rs11368217	TA	T	1031.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	74486052	rs1247591	C	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	74486264	rs1247590	G	A	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	74607868	rs369603475	TA	T	72.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	74702625	rs41401748	G	C	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=1.149;QD=3.48;ReadPosRankSum=2.390;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:346,113:0.25:459
chr4	74711842	rs34821794	C	T	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr4	74713950	rs7658970	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	74714098	rs2367288	G	A	13959.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr4	74718941	rs941758	C	A	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	74719925	rs11723868	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	74736144	rs4074	A	G	7716.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr4	74847292	rs352007	G	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=25.34;SOR=1.580;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	74863997	rs425535	T	C	11396.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr4	75023609	rs6840665	T	C	11739.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr4	75023709	rs2289443	C	T	18328.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr4	75040944	rs13116686	T	G	9356.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,356:1.00:357
chr4	75046310	rs4694183	A	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	75046372	rs561583	A	G	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	75046465	rs561844	C	G	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	75107255	rs4694184	T	C	2301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=0.809;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:58,112:0.66:170
chr4	75107397	rs1246578	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.000;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr4	75147041	rs146639756	C	CGTGTGTGTGTGT	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:32,6:0.16:38
chr4	75231244	rs1460006	C	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	75245343	rs7660209	T	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	75246617	rs4694187	A	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	75248434	rs2367707	A	G	6750.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr4	75248544	rs2367708	C	T	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	75673363	rs4585380	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:56,77:0.58:133
chr4	75673455	rs7699847	T	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	75673533	rs62316277	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr4	75675706	rs35926103	A	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr4	75675841	rs11938093	A	T	7647.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:211,357:0.63:568
chr4	75681217	rs11734944	A	G	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	75937971	rs3822109	C	T	4281.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:519,238:0.31:757
chr4	75938179	rs3775527	G	A	4679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=1005;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=0.524;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:715,288:0.29:1003
chr4	75938236	rs1062293	A	G	2707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;ClippingRankSum=0.000;DB;DP=587;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.729;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:425,161:0.27:586
chr4	75938373	rs919052	C	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.332;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.197;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:108,30:0.22:138
chr4	76415693	rs200764232	G	GTA	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.648;QD=2.25;ReadPosRankSum=0.409;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr4	76415985	rs6833496	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr4	76416779	rs2045863	G	A	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.260;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:161,45:0.22:206
chr4	76434352	rs2306177	T	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr4	76467577	rs11722735	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,17:0.27:64
chr4	76481628	rs62318656	A	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr4	76488533	rs141320514	GCCAAAAT	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-3.945;QD=1.08;ReadPosRankSum=-0.759;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:41,5:0.11:46
chr4	76525648	rs67518748	AT	A	133.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr4	76570994	rs35597810	C	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,49:0.72:68
chr4	76571732	rs884871	C	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:16,40:0.71:56
chr4	76572191	rs2175766	A	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr4	76573688	rs13129043	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr4	76580894	rs17000733	G	A	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:53,106:0.67:159
chr4	76581064	rs6823013	C	T	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:54,107:0.66:161
chr4	76649924	rs2280095	C	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	76650176	rs7657871	C	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	76670180	rs3853184	T	C	14637.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr4	76670345	.	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:23,66:0.74:89
chr4	76676475	rs28573275	A	G	230.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr4	76678576	rs4859552	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr4	76691828	rs324715	G	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	76691850	rs3215203	CACTT	C	277.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr4	76695810	rs10588680	TTCTC	T	901.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr4	76720885	rs13119659	T	C	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.649;SOR=1.239;set=HC	GT:AD:AF:DP	0/1:70,31:0.31:101
chr4	76721414	rs13145290	C	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=1.960;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:48,20:0.29:68
chr4	76721459	rs4859409	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.635;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chr4	76721671	.	CT	C	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.435;QD=3.36;ReadPosRankSum=2.797;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:33,27:0.45:60
chr4	76722041	rs324727	G	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr4	76722353	rs324726	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.802;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:79,40:0.34:119
chr4	76722422	rs13133472	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:57,18:0.24:75
chr4	76725245	rs381067	G	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr4	76726528	rs11733253	T	C	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.898;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.840;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr4	76726539	rs11728073	C	T	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=-0.293;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr4	76730004	rs324687	G	C	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	76730061	rs324688	T	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr4	76730258	rs324690	T	C	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr4	76730309	rs145662788	CTTTAGATTACTTACTAGCCGG	C	217.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr4	76734343	rs17284996	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.775;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:57,31:0.35:88
chr4	76785716	rs1394913	C	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	76785723	rs1394914	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	76785736	rs1394915	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	76787673	rs7654738	T	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	76788692	rs2135234	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	76793228	rs1394916	A	G	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.79;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	76794345	rs6858658	T	G	10359.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr4	76797950	rs13132709	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr4	76800729	rs13130621	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	76800991	rs68095351	A	AT	211.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.25;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	76804067	rs4859564	A	G	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	76805902	rs1976518	C	T	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr4	76805962	rs1976517	G	A	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	76805978	rs1566975	C	T	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr4	76809319	rs7691712	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	76809386	rs7691755	A	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr4	76809569	rs2280100	C	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr4	76812673	rs13116688	C	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	76812853	rs145494194	A	G	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:46,90:0.66:136
chr4	76817412	rs11731367	G	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.918;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr4	76836137	rs6823734	A	G	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	76838929	rs34444403	TA	T	1860.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.657;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.609;QD=9.64;ReadPosRankSum=-1.441;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:40,153:0.79:193
chr4	76841748	rs2280101	A	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	76846755	rs937788	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	76857148	rs138725752	AT	A	2725.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	76857150	rs200169565	T	C	2783.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	76857164	rs4859570	C	T	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	76857309	rs4859571	C	T	11474.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr4	76857388	rs4859572	C	T	12767.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr4	76857395	rs4859573	A	G	12142.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.166;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	76861137	rs6847716	G	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	76877285	rs140718662	C	G	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.640;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:120,41:0.25:161
chr4	76877402	rs9790644	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	76878688	rs2242470	G	A	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	76881401	rs4859577	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	76888625	rs146136510	GGAT	G	403.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr4	76890566	rs76310548	G	A	3767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-2.390;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:103,177:0.63:280
chr4	76903295	rs10021434	G	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	76911752	rs34740469	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	76926197	.	A	AT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.843;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	76928428	rs2276886	C	T	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	76942943	rs3921	C	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	76943137	rs4859584	G	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	76943235	rs4859586	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	76943677	rs4859588	G	A	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	76943764	rs11298565	CT	C	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	76944491	rs4241578	T	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	76955914	rs6532111	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	76956179	rs12649185	G	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=42.25;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	76956188	rs4241580	T	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.16;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	76956289	rs5859488	C	CAA	5443.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr4	76956528	rs4859415	A	G	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	76957171	rs6819597	C	T	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr4	76996958	rs6532172	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	76997157	rs10674212	G	GT,GTT	1461.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.860;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.93;MQRankSum=-0.741;QD=11.33;ReadPosRankSum=-2.192;SOR=0.900;set=HC	GT:AD:AF:DP	1/2:31,63,35:0.49,0.27:129
chr4	77021288	rs7654988	G	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr4	77021433	rs6532189	C	T	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.525;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:147,51:0.26:198
chr4	77022286	rs17001385	C	G	818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.251;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:129,49:0.28:178
chr4	77025273	rs7682766	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:74,29:0.28:103
chr4	77033590	rs1128864	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:220,103:0.32:323
chr4	77033725	rs14773	C	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr4	77039352	rs13115827	A	G	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-1.068;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:193,61:0.24:254
chr4	77052530	rs13126384	T	C	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-1.712;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	77053562	rs4859619	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr4	77065264	rs11736522	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:172,81:0.32:253
chr4	77065476	rs145851413	TAA	T	1533.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-1.206;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:147,82:0.36:229
chr4	77065518	rs11946345	T	C	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.669;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:141,75:0.35:216
chr4	77066587	rs13151075	T	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr4	77067133	rs735696	C	T	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr4	77067368	rs735697	A	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr4	77067389	rs2197104	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.77;ReadPosRankSum=-1.272;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	77105938	.	C	CA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.404;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:146,37:0.20:183
chr4	77134786	rs11547135	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr4	77201332	rs1036787	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr4	77201487	rs1036788	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,70:0.55:127
chr4	77204398	rs74988469	CAT	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.84;ReadPosRankSum=-0.763;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	77274242	rs12504985	T	C	1219.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,65:0.33:198
chr4	77289047	rs78736198	CTT	C	307.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=0.000;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr4	77292801	rs6853408	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:66,29:0.31:95
chr4	77303898	rs6844174	C	T	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	77305346	rs17001890	A	G	6099.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:106,285:0.73:391
chr4	77494534	.	CAATAATAAT	C,CAAT,CAATAAT	408.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=16;set=Intersection	GT:AF:DP	1/2:0.50,0.50:14
chr4	77494564	rs143035086	T	C	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.100;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.114;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr4	77637502	rs344122	A	C	5013.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:88,223:0.72:311
chr4	77652219	rs344135	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr4	77660162	rs344140	G	C	5370.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:86,235:0.73:321
chr4	77660731	rs344141	C	G	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:107,213:0.67:320
chr4	77662248	rs344142	G	A	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:64,166:0.72:230
chr4	77663262	rs344144	T	C	4100.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:90,178:0.66:268
chr4	77669991	rs11097499	A	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.99;ReadPosRankSum=-1.637;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr4	77677570	.	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.455;QD=2.80;ReadPosRankSum=0.702;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	77871016	rs873090	T	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr4	77871187	rs141562324	C	CGCG	570.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr4	77916865	.	G	A	36	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=25;MQ=60.0;NF=4;NR=2;PP=36;QD=11.7952020912;SC=AAATCACCCAGTGATTTTACT;SbPval=0.61;Source=Platypus;TC=19;TCF=13;TCR=6;TR=6;WE=77916873;WS=77916855;set=Platypus	GT:AD:AF:DP	1/0:13,6:0.32:19
chr4	77917458	rs7685131	A	G	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,36:0.35:104
chr4	77949997	rs111698952	TGGTCCAA	T	3625.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chr4	77969825	.	GA	G	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=4.315;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.881;QD=1.00;ReadPosRankSum=-1.987;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:102,26:0.20:128
chr4	77987351	rs4241602	A	G	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	77996521	rs4252767	A	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr4	78034309	rs4859743	A	C	8323.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:190,373:0.66:563
chr4	78079772	rs4150052	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-2.740;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:134,31:0.19:165
chr4	78081744	rs28648488	G	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr4	78082086	rs4150063	C	T	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:41,76:0.65:117
chr4	78106441	rs6822800	C	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	78669454	rs6855336	A	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	78697552	rs34417165	T	TA	407.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.251;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-2.590;SOR=0.591;set=HC	GT:AD:AF:DP	1/1:3,24:0.89:27
chr4	78740066	rs6811439	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.054;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr4	78740132	rs6828302	G	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	78740203	.	G	GACACACACACAC,GACACACACACACAC	2271.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=88;set=Intersection	GT:AF:DP	1/2:0.36,0.54:61
chr4	78815272	rs36071914	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.506;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr4	78830272	rs10551874	AAC	A	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	78870940	rs4859513	T	A	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	78882331	rs57716781	C	CA	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.940;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr4	78987157	rs4859905	A	G	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr4	78987284	rs4859516	AC	CA	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	78989630	rs10016219	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	78989672	rs10016229	G	C	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	78989716	rs10008489	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	78989842	rs10016432	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	79158843	rs10011303	G	T	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr4	79173515	rs34015316	C	CT	2732.73	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:105,174:0.62:279
chr4	79176325	rs1017647	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	79176361	rs1017646	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	79186171	rs2867014	G	A	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr4	79187832	rs2008587	G	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	79187900	rs7694740	T	G	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:41,94:0.70:135
chr4	79188160	rs2008786	C	T	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr4	79204209	rs1378236	C	T	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	79238496	rs17457087	G	A	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:169,94:0.36:263
chr4	79238649	rs345514	T	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=3.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=0.110;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:133,85:0.39:218
chr4	79240196	rs11727404	C	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr4	79240473	rs345511	C	T	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.355;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:78,16:0.17:94
chr4	79258775	rs10010238	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:99,51:0.34:150
chr4	79284694	rs6835769	C	T	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.518;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:112,37:0.25:149
chr4	79295454	rs142830876	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr4	79297117	rs11098162	A	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:114,66:0.37:180
chr4	79308446	rs10016220	T	C	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr4	79339950	rs12649596	G	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr4	79345650	rs1471752	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=0.261;SOR=2.364;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr4	79350200	rs112867538	C	CTGTG	745.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr4	79359885	rs2170899	T	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr4	79365479	rs7678731	C	T	40.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.20;ReadPosRankSum=-0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	79366655	rs3749489	G	C	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=349;ExcessHet=3.0103;FS=3.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.547;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:256,92:0.26:348
chr4	79372856	rs10026662	A	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:130,51:0.28:181
chr4	79372930	rs753752	C	T	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.189;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:250,88:0.26:338
chr4	79373254	rs753751	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr4	79373520	rs185282133	A	G	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr4	79385719	rs6851427	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:69,29:0.30:98
chr4	79387464	rs7684722	A	G	20121.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr4	79387586	rs34840208	A	G	2655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.50;ReadPosRankSum=0.615;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:54,107:0.66:161
chr4	79391020	rs7681619	C	T	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr4	79391036	rs1496602	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	79391256	rs7664505	T	C	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	79391392	rs10018235	G	A	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr4	79391424	rs6533688	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	79393269	rs28566963	T	C	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:92,209:0.69:301
chr4	79400868	rs11098194	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=4.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=1.548;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr4	79403747	rs924149	C	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr4	79409997	rs1496603	T	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	79417863	rs7674053	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr4	79420864	rs7677541	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.27;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	79420864	.	TATTTCC	CATTTCG,CATTTTG	463	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=24;MQ=60.0;NF=21,9;NR=4,2;PP=463,133;QD=20.6587149945;SC=TTCCTAACCATATTTCCTTAG;SbPval=0.58;Source=Platypus;TC=37;TCF=31;TCR=6;TR=25,11;WE=79420878;WS=79420854;set=Platypus	GT:AF:DP	0/1:0.68:37
chr4	79420869	rs76630865	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=0.430;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr4	79420870	rs7695038	C	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.24;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	79428447	rs13141571	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	79428489	rs13118276	A	G	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr4	79428796	rs28739412	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr4	79432455	rs3749488	A	C	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=1.572;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:31,52:0.63:83
chr4	79437155	rs3749487	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:269,125:0.32:394
chr4	79440425	rs2903471	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	79442799	rs11360692	GT	G	417.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr4	79443774	rs931604	T	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr4	79443850	rs931606	G	A	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:63,152:0.71:215
chr4	79444029	rs1496598	G	A	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr4	79447763	rs34670941	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=3.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.717;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:122,33:0.21:155
chr4	79455714	rs4975070	C	G	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	79455733	rs4975139	C	T	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	79455858	rs4975140	T	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	79460647	rs10591745	GA	G	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=1.930;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr4	79503230	rs1472365	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr4	79512800	rs10003947	T	A	3092.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:63,142:0.69:205
chr4	79531186	rs5944	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	79531308	rs4612	C	T	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	79768294	.	T	TTA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.095;QD=2.39;ReadPosRankSum=0.799;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:73,15:0.17:88
chr4	79781169	.	G	GT	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=7.314;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.193;QD=3.29;ReadPosRankSum=-0.212;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr4	79845007	rs13108247	C	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	79854436	rs10857059	T	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	80898808	rs35798108	C	T	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:74,146:0.66:220
chr4	80905930	.	G	GA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=-0.027;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:92,19:0.17:111
chr4	80905990	rs12647691	CG	GT	3562.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;JOINED;set=Intersection	GT:AD:AF:DP	0/1:43,91:0.68:134
chr4	80906131	rs4444771	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr4	80975372	rs10745242	A	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:127,67:0.35:194
chr4	80976420	rs11730210	G	T	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.217;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-1.043;QD=6.27;ReadPosRankSum=-0.503;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:201,110:0.35:311
chr4	80977078	rs4594664	T	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=0.749;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr4	81122995	rs56102626	G	A	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	81123013	rs141824276	CGT	C	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.802;QD=3.23;ReadPosRankSum=-1.131;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr4	81123378	rs142234659	C	T	16693.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr4	81187895	rs1047245	A	C	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr4	81222286	rs13119149	T	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	81529380	rs2903671	T	C	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	81529518	rs2867782	T	C	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	81884610	rs11452353	A	AT	1767.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.10;ReadPosRankSum=2.248;SOR=1.643;set=HC	GT:AD:AF:DP	1/1:3,77:0.96:80
chr4	81884722	rs1052325	G	A	7818.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr4	81952848	rs17346716	G	A	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:295,166:0.36:461
chr4	81967188	rs6831040	C	T	6209.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr4	81973224	rs12647814	A	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	81973260	rs1390318	C	T	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	82369160	rs1077802	C	T	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr4	82369205	rs1077803	T	A	2306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.34;ReadPosRankSum=-2.602;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:29,104:0.78:133
chr4	83276430	rs3838641	C	CA	327.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:36,23:0.39:59
chr4	83350954	rs2516817	C	T	60.79	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr4	83352177	rs10646358	C	CTT	4084.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	83369287	rs4285076	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,30:0.31:97
chr4	83375719	rs6853622	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	83375746	rs17351082	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr4	83411197	rs2276884	T	C	4470.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:76,191:0.72:267
chr4	83424089	.	T	TA	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.093;QD=1.66;ReadPosRankSum=0.579;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:113,33:0.23:146
chr4	83483562	rs35866205	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr4	83552809	rs3857138	A	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	83582064	rs3733228	G	T	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:73,137:0.65:210
chr4	83582211	rs3733227	C	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	83626382	rs1876218	C	A	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,82:0.69:118
chr4	83626674	rs6853042	G	A	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	83742336	rs4634209	C	T	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	83765605	rs11541628	C	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.011;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.071;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr4	83778378	rs4235054	A	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	83784337	rs7666917	G	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	83787845	rs7356522	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	83788139	rs2290739	C	A	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	83788344	rs2045478	A	T	9385.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr4	83788562	rs2045479	T	C	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	83791373	rs10015419	C	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	83791649	rs3762902	G	T	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	83792464	rs35679019	TAC	T	1208.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	83792498	rs7685043	G	T	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	83792555	rs7686508	C	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	83793243	rs4693525	A	C	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	83793354	rs143845447	A	ATTTTG	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	83793368	rs11942312	C	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	83795806	rs10025654	T	C	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	83838217	rs1031639	G	A	8816.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr4	83838262	rs897945	G	T	10368.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr4	83839799	rs6535411	A	G	2381.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr4	83852065	rs985899	G	A	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	83857402	rs6535415	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	83900043	rs6535422	A	G	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr4	83900260	rs7674484	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	83905258	rs9994716	C	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	83970297	.	C	CT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=2.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.751;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:128,29:0.18:157
chr4	83977975	rs6535432	C	T	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	83989516	rs2868747	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	84189012	rs11448409	G	GT	229.82	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr4	84191031	rs6535454	A	G	8252.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr4	84193366	rs6841889	C	T	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	84205618	rs13113787	A	C	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr4	84205872	rs6818847	C	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr4	84223461	rs4285078	G	C	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	84230619	rs11099592	T	C	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-2.337;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:76,28:0.27:104
chr4	84232104	rs6535455	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr4	84234174	.	C	CA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-0.528;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	84234190	rs6818355	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.763;QD=4.87;ReadPosRankSum=1.651;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr4	84234229	rs6840520	G	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=1.474;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:83,30:0.27:113
chr4	84240654	rs12501123	G	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr4	84240680	rs12501124	G	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr4	84347363	rs4693624	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr4	84353154	rs2047210	T	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.244;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr4	84362443	rs4693088	T	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.431;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr4	84364751	rs7665103	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr4	84364808	rs6535473	T	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr4	84367050	rs11099599	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr4	84367286	rs11099600	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:63,35:0.36:98
chr4	84368225	rs11272773	GCATTGTGGCCAATGCCTGTAATCC	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.872;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr4	84370091	rs13141136	A	G	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.397;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:106,38:0.26:144
chr4	84370124	rs10718573	TA	T	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=5.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.356;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr4	84374480	rs1494961	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:80,30:0.27:110
chr4	84376743	rs6831595	A	T	14582.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr4	84380955	rs12505955	G	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=2.204;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr4	84383810	rs12642536	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr4	84393475	rs6535478	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.213;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr4	84397590	rs17352803	A	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	84397620	rs17352824	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	84401623	rs6838354	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	84403491	rs35608460	A	AG	36.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:23,4:0.15:27
chr4	84458001	rs55833887	A	G	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:11,41:0.79:52
chr4	84458028	rs56139069	C	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:8,33:0.80:41
chr4	84465613	rs10516690	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr4	84465855	rs28360718	A	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	84509465	rs11394944	T	TG	8964.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	84515968	rs3733327	C	T	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:29,99:0.77:128
chr4	84518558	rs3733329	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.163;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:14,31:0.69:45
chr4	84519775	rs71668661	AT	A	1015.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.907;QD=9.40;ReadPosRankSum=-0.452;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:31,77:0.71:108
chr4	84525973	rs35602893	CT	C	2524.73	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:41,130:0.76:171
chr4	85465390	.	ATT	A,AT	1001.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=1.263;SOR=1.009;set=HC	GT:AD:AF:DP	1/2:6,19,37:0.31,0.60:62
chr4	85530796	rs17009168	A	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr4	85555196	rs13102661	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr4	85560000	.	T	TTATA	50	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=21;MQ=60.0;NF=1;NR=1;PP=50;QD=27.5;SC=AGGAAATAGTTTATATATATA;SbPval=0.56;Source=Platypus;TC=6;TCF=2;TCR=4;TR=2;WE=85560008;WS=85559990;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr4	85612737	rs3747680	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr4	85625701	rs1838039	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	85634488	rs13108722	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	85647941	rs71670880	T	TA	306.50	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr4	85656350	rs6838727	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	85665027	.	CTAATA	C	572.73	.	AC=1;AF=0.500;AN=2;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr4	85699579	rs12502409	A	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr4	85710822	rs200702938	ACC	A	305.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.453;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr4	85710824	rs13137042	C	A	259.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.595;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:21,15:0.42:36
chr4	85730914	rs6531775	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	85762385	rs2046402	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:218,84:0.28:302
chr4	85765541	rs2869216	T	C	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr4	86851884	rs13126782	T	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr4	86863166	rs346508	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	86863206	rs11367691	CT	C	84.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr4	86921609	rs144475387	A	AC	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.397;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr4	86952590	rs13103861	G	A	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.004;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,80:0.76:105
chr4	86952648	rs10025882	T	C	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr4	86952687	rs9307014	C	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr4	86952751	rs10516763	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr4	87019904	rs4133139	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	87024228	.	C	CTGTGTGTG	1470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.241;QD=27.24;ReadPosRankSum=-1.326;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr4	87024409	rs28529458	T	C	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr4	87463813	rs4529013	G	A	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=-1.695;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:60,93:0.61:153
chr4	87463933	rs72665744	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr4	87638364	rs4263359	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr4	87679642	rs1420624	A	C	2104.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:57,86:0.60:143
chr4	87684031	rs710832	A	G	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:49,132:0.73:181
chr4	87690998	rs2230600	A	G	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:93,135:0.59:228
chr4	87706506	rs989902	T	G	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-1.278;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:66,120:0.65:186
chr4	87720470	rs11358237	CT	C	92.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.502;QD=5.80;ReadPosRankSum=1.223;SOR=1.793;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr4	87728676	rs17694112	A	C	1021.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr4	87731238	rs11930396	G	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr4	87754419	rs10050311	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr4	87754713	rs7678571	G	A	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr4	87808810	rs3035472	G	GCA	1434.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,41:0.36:115
chr4	87809387	rs1550931	G	T	8956.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,337:1.00:338
chr4	87812564	rs10011798	G	C	2454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.151;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.876;QD=12.09;ReadPosRankSum=-0.366;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:87,116:0.57:203
chr4	87812586	rs55723875	TA	T	4137.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:20,240:0.92:260
chr4	87812810	rs35305216	G	GA	531.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr4	87957989	rs340629	T	C	10136.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.56;ReadPosRankSum=0.232;SOR=5.960;set=HC	GT:AD:AF:DP	1/1:5,488:0.99:493
chr4	87968798	rs6854749	A	T	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:114,172:0.60:286
chr4	87968979	rs58633957	G	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr4	88029482	rs3733377	C	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr4	88048163	rs11448202	A	AT	1330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.326;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:195,101:0.34:296
chr4	88048315	rs112686186	GC	G	598.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr4	88048316	rs11351193	C	T	217.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.446;SOR=0.266;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr4	88048318	rs28700060	T	C	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.535;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr4	88048327	.	CA	C	452	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=8;HapScore=3;MGOF=18;MMLQ=28;MQ=58.2;NF=1;NR=44;PP=452;QD=10.3555555556;SC=TTCCCCCCCCCACCAAGATAG;SbPval=0.41;Source=Platypus;TC=85;TCF=1;TCR=84;TR=45;WE=88048336;WS=88048301;set=Platypus	GT:AD:AF:DP	0/1:40,45:0.53:85
chr4	88048328	rs112453934	A	C	1140.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;MQRankSum=0.000;QD=24.27;ReadPosRankSum=1.399;SOR=3.958;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr4	88052219	rs342467	T	C	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	88053085	rs342466	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	88056719	rs56703224	GT	G	3572.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=22.76;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	88056925	rs342464	A	G	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	88226231	rs11735092	T	C	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	88226480	rs6850131	A	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	88231339	rs74802974	C	A	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.911;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.264;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr4	88231392	rs72613567	T	TA	1346.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr4	88234874	rs7698974	C	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	88238448	rs6531975	A	G	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	88239609	rs13118664	A	T	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr4	88258483	rs9991501	T	C	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	88261828	rs7679024	A	C	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:88,125:0.59:213
chr4	88293745	rs6849846	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr4	88293887	rs6531985	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:122,88:0.42:210
chr4	88293992	rs11375790	G	GA	441.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr4	88295786	rs62319101	A	G	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,31:0.37:83
chr4	88312251	rs368478743	GT	G	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.855;QD=7.58;ReadPosRankSum=-0.650;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:14,30:0.68:44
chr4	88312293	rs28654511	A	T	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr4	88401616	rs9933	A	G	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:89,151:0.63:240
chr4	88401735	rs34452129	CTA	C	3072.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:62,86:0.58:148
chr4	88403609	rs72654103	G	A	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:222,125:0.36:347
chr4	88403823	rs6857504	T	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr4	88412806	rs1130643	T	C	5712.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:186,265:0.59:451
chr4	88415636	rs1049544	G	C	8227.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:164,368:0.69:532
chr4	88416188	rs13051	G	T	1989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.240;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=1.791;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:58,92:0.61:150
chr4	88416223	rs8342	A	G	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:50,83:0.62:133
chr4	88532182	rs142413098	A	AGT	140.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr4	88533163	.	TTGTGTGTGTG	T,TTG	184.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=31;set=Intersection	GT:AF:DP	0/1:0.27:26
chr4	88533441	rs13131929	T	C	1725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=1.958;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:77,48:0.38:125
chr4	88533445	rs13131936	T	C	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=1.653;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:80,49:0.38:129
chr4	88534235	rs2736982	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:123,61:0.33:184
chr4	88535832	.	A	ATAGCAGTGACAGCAGCAG	6122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DP=801;ExcessHet=3.0103;FS=3.626;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=12.193;QD=11.44;ReadPosRankSum=1.395;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:379,156:0.29:535
chr4	88537737	rs2615489	G	A	6375.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr4	88577573	rs2615480	A	G	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr4	88578310	rs2615479	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	88583135	rs10019009	A	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr4	88584148	rs2615498	C	T	5157.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:288,153:0.35:441
chr4	88584160	rs2615497	G	A	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:278,139:0.33:417
chr4	88584507	rs2627724	G	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.875;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:67,38:0.36:105
chr4	88732453	rs4693183	C	T	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	88732531	rs4693878	T	C	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	88732746	rs13144371	A	G	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	88732763	rs17013181	A	G	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr4	88732911	rs1054628	C	T	4667.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:128,212:0.62:340
chr4	88755828	rs7698623	T	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr4	88755967	rs11097173	C	T	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr4	88759690	rs6835632	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	88813269	rs71594826	G	GC	14630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-2.961;QD=25.36;ReadPosRankSum=0.470;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:210,367:0.64:577
chr4	88813270	.	C	CCAAT	2970	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=59.54;NF=49;NR=99;PP=2970;QD=20;SC=CAGGCATTGGCATGACCAAAG;SbPval=0.15;Source=Platypus;TC=321;TCF=84;TCR=237;TR=148;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	0/1:173,148:0.46:321
chr4	88813271	.	A	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=59.61;NF=108;NR=100;PP=2962;QD=20;SC=AGGCATTGGCATGACCAAAGC;SbPval=0.42;Source=Platypus;TC=432;TCF=215;TCR=217;TR=208;WE=88813279;WS=88813260;set=Platypus	GT:AD:AF:DP	0/1:224,208:0.48:432
chr4	88813271	rs35753589	A	AATT	14898.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-3.060;QD=26.09;ReadPosRankSum=0.860;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:212,359:0.63:571
chr4	88813503	rs6532031	T	C	5453.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:137,241:0.64:378
chr4	88813875	rs3828554	T	C	9943.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;MQ=59.92;set=Intersection	GT:AD:AF:DP	0/1:239,471:0.66:710
chr4	88815163	rs3061166	A	ATTAGG	13134.73	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:251,317:0.56:568
chr4	88815439	rs3061164	CA	C,CAA	348.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.949;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:2,18,14:0.53,0.41:34
chr4	88898941	rs11728697	C	T	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:90,165:0.65:255
chr4	88929305	rs2728118	G	A	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr4	88940594	rs62310565	C	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:50,107:0.68:157
chr4	88959381	rs2725221	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:106,42:0.28:148
chr4	88986745	rs11404312	C	CT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.125;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:22,24:0.52:46
chr4	89015857	rs2231164	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:31,57:0.65:88
chr4	89016782	rs2231162	A	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	89018565	rs2231157	A	G	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:57,133:0.70:190
chr4	89020427	rs2231156	C	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr4	89022362	rs2231153	C	T	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	89036353	rs2725261	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	89052323	rs2231142	G	T	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:219,108:0.33:327
chr4	89053141	rs3219193	C	T	960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.238;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:25,43:0.63:68
chr4	89300241	rs61978650	C	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr4	89306659	rs7677237	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr4	89360994	.	CTTTT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.193;SOR=1.944;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr4	89378760	rs150387057	C	CG	242.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	89389640	rs4585264	C	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	89397091	rs7699006	A	G	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr4	89400435	rs376253040	CA	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.096;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=2.057;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr4	89415396	rs6857425	T	C	12747.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr4	89420956	rs3733446	G	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr4	89421086	rs10516809	A	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.622;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:47,19:0.29:66
chr4	89443162	rs3177413	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,77:0.63:123
chr4	89444528	rs67364668	G	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr4	89527323	rs17799056	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.72;ReadPosRankSum=0.459;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr4	89575324	rs2860427	T	A	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:207,109:0.34:316
chr4	89576581	rs2282593	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr4	89577214	rs2972040	A	T	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.560;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr4	89585235	rs2972018	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr4	89588689	rs3017921	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=1.224;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	89599421	rs2604227	A	C	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	89607905	rs3737488	A	G	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:165,84:0.34:249
chr4	89618837	rs710834	T	C	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=1.482;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:163,87:0.35:250
chr4	89628242	rs2924934	G	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr4	89649659	rs9224	A	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr4	89653103	rs112818517	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr4	89668210	rs2278877	G	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:106,48:0.31:154
chr4	89669110	rs7658690	G	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.851;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.56;ReadPosRankSum=2.289;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr4	89669115	rs7658214	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=2.186;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr4	89670155	rs3756050	C	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:182,84:0.32:266
chr4	89671721	rs61737091	C	T	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=1.804;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:228,97:0.30:325
chr4	89671810	rs3217628	A	AGG	786.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr4	89689354	rs3756049	A	G	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	89702564	rs2290784	C	G	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr4	89711690	rs112676553	T	TA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=1.168;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:138,29:0.17:167
chr4	89711849	rs2290782	T	C	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=-0.212;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:204,85:0.29:289
chr4	89726283	rs2276936	A	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-1.491;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	90034686	rs17015027	A	G	1388.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:203,84:0.29:287
chr4	90168882	rs13115988	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.420;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr4	90169925	rs7653897	A	G	6078.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr4	90170118	rs28622301	A	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=2.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-2.001;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:151,52:0.26:203
chr4	90743317	rs3216147	T	TC	3089.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr4	90743331	rs10005233	C	T	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	90756550	rs7681440	C	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	90816023	rs1442140	A	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	90816790	rs2289515	T	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr4	90855932	rs1038140	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr4	90874095	rs3832297	A	AC	1080.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr4	91234250	rs1466391	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr4	91246656	rs1870795	C	T	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr4	91246905	rs9284586	C	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	91246916	rs9284587	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	91321314	rs28572332	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=1.649;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:197,64:0.25:261
chr4	91584811	rs6842658	A	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr4	91584992	rs6842926	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,26:0.81:32
chr4	91585003	rs62314392	T	C	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr4	91585060	rs6843110	A	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr4	91701720	rs2271592	C	T	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr4	91737018	rs3796673	C	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=2.058;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:253,72:0.22:325
chr4	92240031	rs9999729	C	G	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	92240080	rs9999885	G	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	92240278	rs7653977	A	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	92240317	rs7683541	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	92240802	rs6532289	C	T	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	92240892	rs6816636	C	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	92240925	rs6532290	T	G	4316.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	92241031	rs6817404	G	T	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	92241071	rs6816883	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	92246344	rs3762827	G	A	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	92246541	rs1528572	T	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	93511481	rs2870639	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,20:0.34:59
chr4	94180159	rs7687990	A	G	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr4	94750058	rs10009502	C	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	94751263	.	T	C	163.77	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	95169682	rs10034781	G	T	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.402;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:128,71:0.36:199
chr4	95173779	rs7439869	T	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr4	95185854	rs10029551	A	G	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.000;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr4	95197520	rs6823404	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.495;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:183,69:0.27:252
chr4	95206252	rs67631469	TTATC	T	942.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr4	95229745	rs55710447	T	C	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.215;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.551;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:112,26:0.19:138
chr4	95255637	rs2289186	T	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	95498617	rs35078286	GAT	G	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	95500628	rs3828518	A	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=0.219;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr4	95503670	rs3857212	G	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	95503902	rs5013417	T	C	3842.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:99,178:0.64:277
chr4	95505975	rs12639887	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	95506214	rs2172448	G	A	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=2.118;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr4	95506842	rs11097431	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.373;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chr4	95508108	rs70946535	CT	C	892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.970;QD=6.56;ReadPosRankSum=0.348;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:45,91:0.67:136
chr4	95529430	rs10033359	C	T	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	95529444	rs9307146	C	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	95531417	rs10017461	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	95531562	rs10007050	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	95539267	rs966845	G	A	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr4	95561459	rs7690296	A	G	2381.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:28,101:0.78:129
chr4	95561651	rs10716970	GT	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.036;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.053;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr4	95578588	rs13107595	G	A	9828.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr4	95583827	rs10031423	C	T	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=12.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-0.323;SOR=0.021;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr4	95585038	rs56921499	G	A	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.332;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr4	95585225	rs1056772	A	G	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.852;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:120,40:0.25:160
chr4	95587259	rs11550270	A	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-1.607;SOR=1.297;set=HC	GT:AD:AF:DP	0/1:106,33:0.24:139
chr4	95973095	rs5860387	GCTTT	G	148.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr4	96035796	rs10622489	G	GAC	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr4	96073956	rs1365691	A	T	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=1.056;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:98,27:0.22:125
chr4	96075965	rs1434536	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr4	96091250	rs2241744	G	A	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr4	96091524	rs2241743	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,33:0.32:102
chr4	96106322	rs2289043	A	G	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.149;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:97,37:0.28:134
chr4	96123981	rs3733212	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:106,60:0.36:166
chr4	96127869	rs2276322	T	G	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=1.303;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:86,41:0.32:127
chr4	96137512	rs995062	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr4	96169733	rs13118653	G	T	9851.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr4	96256616	rs4699423	A	G	4055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.08;ReadPosRankSum=0.294;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:93,195:0.68:288
chr4	96256673	rs1843018	G	A	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	96761233	rs10516983	G	A	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr4	98761900	rs11735193	C	T	4814.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr4	98864859	rs28417716	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	98893334	rs13147195	G	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	98902278	rs35146453	A	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	99027137	rs2865979	T	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	99027159	rs28403003	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr4	99027184	rs2903150	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	99027218	rs2903151	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	99030211	rs10019087	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	99049593	rs17558193	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	99055406	rs13328042	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	99055480	rs13328005	T	C	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	99055637	rs36227055	CAGATA	C	1224.52	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr4	99055730	rs35399947	C	CTAA	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	99064379	rs4699605	A	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr4	99218108	rs34325900	G	GA	5699.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	99218169	rs35602562	C	CT	764.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=-0.563;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr4	99337881	rs10516430	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr4	99341156	rs12512920	C	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.60;ReadPosRankSum=-1.097;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:6,17:0.74:23
chr4	99355017	rs12507118	G	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr4	99358083	rs11386407	A	AT	821.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr4	99399748	rs4303985	G	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr4	99408106	rs6838913	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr4	99428608	rs17027628	G	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	99802395	rs11729285	C	T	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;MQ=60.98;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr4	99808872	rs994636	T	C	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr4	99824511	.	G	GT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.483;QD=4.13;ReadPosRankSum=-1.907;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr4	99850126	rs11723037	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:80,30:0.27:110
chr4	99918661	rs10035037	A	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	99926965	rs2123782	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	99952607	rs1037476	C	T	5513.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr4	99952710	rs1037475	A	G	10679.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr4	99964323	rs188747196	T	G	1036.88	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr4	99966568	rs11721765	G	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	99993869	rs17595424	G	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.950;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:178,53:0.23:231
chr4	99996252	rs28730627	GAAC	G	2099.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:123,60:0.33:183
chr4	100001247	rs1154412	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	100002644	rs56376583	AT	A	3090.73	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:223,120:0.35:343
chr4	100003333	rs28730595	A	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.909;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:146,52:0.26:198
chr4	100006645	rs1154410	A	G	3682.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:67,162:0.71:229
chr4	100009738	rs1154401	G	C	8423.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:195,386:0.66:581
chr4	100009952	rs11434442	T	TGG	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-1.740;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr4	100020987	rs2602844	C	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	100021124	rs2851279	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr4	100021253	rs2851278	G	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	100045500	rs1042365	T	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr4	100045574	rs1042364	T	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-1.406;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr4	100045616	rs1126673	C	T	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=2.441;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:17,39:0.70:56
chr4	100045647	rs2602894	A	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-1.588;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr4	100047812	rs1126672	G	A	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.515;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:101,42:0.29:143
chr4	100047929	rs10009145	G	A	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr4	100048327	rs9307234	G	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	100048414	rs1126671	T	C	5727.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:114,268:0.70:382
chr4	100048506	rs6836440	G	A	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.84;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	100048506	.	GCAT	ACAC,ACAT	1828	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=7;MMLQ=24;MQ=60.0;NF=28,87;NR=31,109;PP=620,1828;QD=11.4147097434;SC=CTGTGATGGAGCATAAAAGAA;SbPval=0.41;Source=Platypus;TC=196;TCF=87;TCR=109;TR=59,196;WE=100048517;WS=100048496;set=Platypus	GT:AF:DP	0/1:0.30:196
chr4	100048509	rs6813415	T	C	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=1.489;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:144,66:0.31:210
chr4	100052733	rs1126670	C	A	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:30,71:0.70:101
chr4	100052963	rs35019093	C	CT	578.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:77,39:0.34:116
chr4	100053025	rs13129488	G	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr4	100057858	rs55878268	T	TA	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr4	100062675	rs13138294	T	G	559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.467;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:68,34:0.33:102
chr4	100062819	rs2032349	A	G	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr4	100064166	rs5860566	G	GA	93.84	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	100064233	rs2213035	G	A	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.344;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr4	100064305	rs4699715	C	G	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	100064326	rs3919370	A	T	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.068;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:149,54:0.27:203
chr4	100065509	rs1800759	T	G	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr4	100128530	rs7661441	G	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.770;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr4	100131163	rs6833176	G	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:96,41:0.30:137
chr4	100134713	rs5860571	A	AT	1793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.231;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:156,62:0.28:218
chr4	100137292	.	ATT	A	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=6.16;ReadPosRankSum=1.442;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:26,22:0.46:48
chr4	100137330	rs146084391	T	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr4	100140306	rs4699735	A	T	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr4	100205819	rs28364312	C	A	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.38;ReadPosRankSum=1.181;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:109,42:0.28:151
chr4	100205829	rs28364311	T	G	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.801;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:111,44:0.28:155
chr4	100212173	rs13134764	A	T	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.827;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:172,48:0.22:220
chr4	100212197	rs4147531	G	A	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:126,60:0.32:186
chr4	100231602	rs28914783	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr4	100235053	rs1789882	A	G	3639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-16.381;QD=4.43;ReadPosRankSum=2.523;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:593,228:0.28:821
chr4	100239319	rs1229984	T	C	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr4	100257907	rs2298753	T	C	3815.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:90,165:0.65:255
chr4	100258007	rs1612735	T	C	11093.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:188,506:0.73:694
chr4	100258054	rs1693453	C	A	14932.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr4	100260667	rs66502432	ACGCC	A	350.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=10.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.70;ReadPosRankSum=0.580;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr4	100260669	rs5860576	GCCC	G	416.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=10.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.94;ReadPosRankSum=0.036;SOR=1.872;set=HC	GT:AD:AF:DP	0/1:10,12:0.55:22
chr4	100260677	rs2298754	C	G	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=10.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.713;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	100260681	rs1975438	C	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr4	100260789	rs698	T	C	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:47,147:0.76:194
chr4	100261577	rs55753621	AT	A	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr4	100263834	rs1693481	C	T	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:32,72:0.69:104
chr4	100263942	rs1789912	C	T	9296.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:265,422:0.61:687
chr4	100263965	rs1693482	C	T	10549.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:288,470:0.62:758
chr4	100266112	rs1693425	C	T	6660.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:137,295:0.68:432
chr4	100266330	rs1693426	A	G	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:54,125:0.70:179
chr4	100266478	rs70956000	CA	C	208.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,8:0.21:38
chr4	100266483	rs200651908	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.627;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr4	100266583	rs1662053	A	C	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	100268190	rs283413	A	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	100269045	rs17526590	G	A	8786.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:209,407:0.66:616
chr4	100341643	rs1154460	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:57,35:0.38:92
chr4	100356179	rs1154469	C	T	1317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.450;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:160,78:0.33:238
chr4	100356337	rs1154470	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:152,66:0.30:218
chr4	100571567	.	G	A	5229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=0.096;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:111,241:0.68:352
chr4	100784118	rs41275723	T	G	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-0.695;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:97,40:0.29:137
chr4	100784163	rs62305046	T	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=4.642;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.892;QD=4.06;ReadPosRankSum=-1.009;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:139,56:0.29:195
chr4	100784875	rs61359294	G	GT	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.827;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.703;QD=4.13;ReadPosRankSum=-1.507;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr4	100805207	rs6532835	C	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.166;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr4	100849574	rs17541426	A	G	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:309,143:0.32:452
chr4	101108875	rs58706659	GT	G	1222.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:80,35:0.30:115
chr4	101108877	rs201713115	T	C	1231.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:80,36:0.31:116
chr4	101109385	rs3749603	A	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	101337150	rs4699401	C	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	101338217	rs3733437	T	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr4	101368661	rs1157180	A	G	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	101953322	rs2851060	C	T	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,61:0.69:88
chr4	101961825	rs139637703	AT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.408;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr4	102092507	rs35058537	C	CA	206.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.90;ReadPosRankSum=0.489;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr4	102171591	rs2583404	T	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	102171606	rs2850958	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	102251501	rs28664200	T	C	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	102267821	rs2850327	AA	CG	11448.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	102268034	rs3974660	A	ACGC,ACGCCGC	4244.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=331;set=Intersection	GT:AF:DP	1/2:0.08,0.88:195
chr4	102642453	rs10856962	T	C	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr4	102642526	rs12506517	T	C	2921.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:74,136:0.65:210
chr4	102750922	rs17266594	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr4	102751076	rs10516487	G	A	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:88,154:0.64:242
chr4	102751276	rs10516486	C	T	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr4	102751401	rs58497383	GTTT	G	1578.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.748;QD=21.63;ReadPosRankSum=0.959;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,51:0.70:73
chr4	102791905	rs10516483	C	G	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr4	102839287	rs3733197	G	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:61,116:0.66:177
chr4	102839351	.	G	GT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=1.206;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr4	102839362	rs3733198	A	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.50;SOR=2.262;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	102942761	rs2631261	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	102965043	rs3113676	T	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	102992517	rs34184671	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.32;ReadPosRankSum=-0.715;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:11,32:0.74:43
chr4	103174491	rs151370	A	G	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr4	103225513	rs11097773	T	C	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:162,92:0.36:254
chr4	103228545	rs1462947	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr4	103228734	rs35411892	C	T	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-2.219;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:172,87:0.34:259
chr4	103458888	rs3830689	TCA	T	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr4	103514658	rs1609993	T	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	103533821	rs4648110	T	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr4	103553447	rs5860729	GA	G	721.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,46:0.68:68
chr4	103553543	rs735403	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr4	103555992	rs2272697	A	G	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr4	103556316	rs909349	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr4	103556367	rs11436517	G	GT	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr4	103557077	rs2866413	G	A	4469.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:96,204:0.68:300
chr4	103557192	rs4547797	C	T	3416.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:83,155:0.65:238
chr4	103557219	rs2866414	C	T	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:61,109:0.64:170
chr4	103557251	rs10027437	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr4	103594918	rs227276	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	103594938	rs227277	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	103610872	rs227365	A	G	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	103611845	rs227368	C	T	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:375,169:0.31:544
chr4	103612018	rs227369	G	T	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	103732704	rs201561589	T	TG	329.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	103911069	rs2715591	C	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr4	104068855	.	A	AT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=6.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.609;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr4	104104194	.	A	T	65.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr4	104510766	rs2765	G	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	105393320	rs4282179	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=-1.416;SOR=1.347;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr4	105393361	rs4413407	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.21;ReadPosRankSum=-1.208;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr4	106164980	rs17319679	G	A	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.531;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:86,27:0.24:113
chr4	106290829	rs16345	A	ACTTGGGGAAAAAGAGT	2808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=2.812;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:263,82:0.24:345
chr4	106292109	rs72665979	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr4	106292121	rs2726526	G	C	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr4	106320467	rs17035550	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=0.411;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr4	106474096	rs6533206	T	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	106569628	rs56849622	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr4	106569976	rs10682054	C	CCT	615.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.29;MQRankSum=4.826;QD=9.05;ReadPosRankSum=1.835;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chr4	106580340	rs13147012	A	G	2801.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:67,123:0.65:190
chr4	106588509	rs10019217	C	T	3028.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:76,129:0.63:205
chr4	106640184	rs3796926	C	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:24,91:0.79:115
chr4	106819053	rs34712979	G	A	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,58:0.66:88
chr4	106848314	rs4546247	C	T	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	106848703	rs10856978	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	106859549	rs35132891	G	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:73,28:0.28:101
chr4	106861557	rs4627867	A	T	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	106861730	rs4340795	A	G	6873.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr4	106888263	rs4597836	A	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.77;ReadPosRankSum=0.569;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	106891531	rs6817700	A	G	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr4	106892210	rs4449421	T	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	106924931	rs17258724	G	A	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:39,129:0.77:168
chr4	107154273	rs13138528	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	107156365	rs7668276	C	G	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	107165685	rs58634260	TA	T	488.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr4	107168431	rs3775091	G	C	7473.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:1,284:1.00:285
chr4	107172377	rs13113845	C	G	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	107246190	rs11544777	G	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr4	107845794	rs17037102	C	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=0.820;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:153,58:0.27:211
chr4	108048977	rs2158182	A	C	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	108535335	rs9569	C	T	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr4	108553048	rs3756270	G	C	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr4	108581002	rs11291153	GC	G	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:62,21:0.25:83
chr4	108608100	rs45502094	CTCTAACACT	C	1435.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	108615226	rs371693146	CT	C	2518.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr4	108622169	rs71590193	A	AT	736.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;MQ=60.32;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr4	108622241	rs17510783	C	T	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:119,58:0.33:177
chr4	108622475	rs13110240	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chr4	108641169	rs2074372	C	G	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	108641300	rs973126	T	C	13542.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr4	108641317	rs1127006	G	A	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.105;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:345,118:0.25:463
chr4	108641437	rs2074374	C	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,26:0.27:96
chr4	108641464	rs1319253	AA	GC	2609.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	108824655	rs17563907	G	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.206;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr4	108853384	rs6849089	C	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr4	108866058	rs10002671	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr4	108868515	rs6856745	T	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.789;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:62,18:0.23:80
chr4	108926170	rs3775973	T	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	108931039	rs4956145	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr4	108935770	rs7677408	T	C	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-0.087;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:42,88:0.68:130
chr4	108935871	rs4956147	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	108944579	rs4956032	C	T	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	108944821	rs4956033	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	108944846	rs4956034	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	108969590	rs4245927	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	108985388	rs4613638	A	G	5674.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	108991979	rs2276335	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	108999300	rs4956156	G	T	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	108999366	rs4956157	G	A	12356.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr4	109000536	rs6819640	T	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	109002986	rs7681524	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	109010207	rs16996935	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	109576843	rs2851380	G	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-3.446;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr4	109664819	rs6533381	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	109669319	rs33958723	TA	T	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.464;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:61,24:0.28:85
chr4	109683422	rs72666462	T	C	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	109735133	rs2305436	T	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	109735146	rs2305435	T	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	109735209	rs11733727	T	C	195.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	109748227	rs13104307	C	T	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr4	109755705	.	T	TA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.100;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr4	109759469	rs4956063	C	T	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr4	109762918	rs11942576	C	A	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr4	109765897	rs60869815	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.043;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr4	109766177	rs10015534	G	C	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	109766290	rs11098004	T	G	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.139;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr4	109767453	rs5860952	C	CA	7997.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr4	109769844	rs13130308	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr4	109769899	rs13135591	C	T	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr4	109782249	rs13133634	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	109790373	rs142515007	TAAATA	T	2527.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.301;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=1.196;QD=31.21;ReadPosRankSum=-0.557;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:17,64:0.79:81
chr4	109790377	rs72533223	TA	T	149.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=-1.133;QD=1.87;ReadPosRankSum=0.560;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:64,16:0.20:80
chr4	109810573	rs200588468	ATT	A	595.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.645;QD=16.10;ReadPosRankSum=-0.250;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr4	109811003	rs12641411	T	C	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	109817962	rs10856995	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	109820141	rs144167011	A	ATATATCTC	2642.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	109820167	rs6853028	A	C	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	109820195	rs6853368	C	A	7027.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.31;QD=45.34;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	109820202	rs6853372	C	T	7186.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.23;QD=43.56;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr4	109820446	rs6830868	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	109841889	rs5860955	G	GA	538.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr4	109842038	rs2030844	T	A	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	109863599	.	C	CT	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.941;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.308;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:57,36:0.39:93
chr4	109895718	rs70949061	GA	G	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr4	109931455	rs376144125	AC	A	235.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	109931457	rs4995475	C	T	244.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr4	109969183	rs3096481	T	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr4	109969337	rs3108954	G	T	1431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-2.235;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:31,66:0.68:97
chr4	109969456	rs3096482	T	A	353.81	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr4	109971378	rs1863291	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.624;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr4	109971414	rs1863292	T	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr4	110370867	rs13123618	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	110384047	rs70949082	G	GCTTTT	6480.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	110442096	.	C	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.139;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-3.597;QD=1.56;ReadPosRankSum=1.394;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:26,4:0.13:30
chr4	110442103	.	A	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-2.537;QD=1.22;ReadPosRankSum=1.798;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr4	110446454	rs6812906	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr4	110569880	rs138704928	CAAA	C	298.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.19;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	110580084	rs1543812	G	T	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	110585578	rs11405576	C	CT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.754;QD=7.59;ReadPosRankSum=-0.785;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr4	110585645	rs767598	G	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	110602430	rs4698780	T	G	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,151:0.99:152
chr4	110603784	rs3733611	T	C	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	110606394	rs3214165	C	CT	913.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=21.76;SOR=1.236;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	110608536	rs13151303	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	110618658	.	A	G	782.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr4	110619534	rs2301717	T	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	110638810	rs2285714	C	T	503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.121;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:131,43:0.25:174
chr4	110661937	rs551	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	110670807	rs7441380	G	C	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	110678925	rs11098044	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	110678979	rs146158558	T	TTTTAA	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	110679002	rs7437142	G	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	110681618	rs4382037	C	T	5550.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr4	110685820	rs141853578	C	T	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:99,156:0.61:255
chr4	110737389	rs2276326	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr4	110737549	rs6828254	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	110745425	rs3188897	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	110765361	rs7681770	T	G	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	110765372	rs7657133	A	G	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	110773067	rs4698797	G	A	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:118,190:0.62:308
chr4	110786290	rs7679048	C	T	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:74,152:0.67:226
chr4	110786517	rs7679303	A	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr4	110790911	rs764205	A	T	4438.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:88,196:0.69:284
chr4	110914427	rs4698803	A	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.410;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:61,25:0.29:86
chr4	111398047	rs142566268	G	T	1245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.823;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.905;QD=4.53;ReadPosRankSum=0.862;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:196,79:0.29:275
chr4	111398208	rs10004516	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	111409705	rs1126483	T	C	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=0.748;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:247,105:0.30:352
chr4	111437103	rs2348432	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	111437127	rs2348433	A	C	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr4	111440074	rs3775958	C	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr4	111440302	rs17552555	T	C	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:159,75:0.32:234
chr4	111452312	.	T	C	34	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=16;MQ=60.0;NF=3;NR=1;PP=34;QD=17.1928031368;SC=ATTTTATCTTTTAGTAATAAA;SbPval=0.86;Source=Platypus;TC=10;TCF=6;TCR=4;TR=4;WE=111452320;WS=111452302;set=Platypus	GT:AD:AF:DP	1/0:6,4:0.40:10
chr4	111454153	rs671841	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	111469295	rs10709769	GT	G	41.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.49;ReadPosRankSum=0.086;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	111482717	rs17623663	T	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:21,59:0.74:80
chr4	111781650	rs10213399	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	113066831	rs10002700	G	A	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	113176004	rs79801738	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr4	113178894	rs147158310	ATTTGT	A	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	113179077	rs4834247	C	T	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	113179080	rs4834248	A	T	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	113187731	rs75171772	G	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-2.253;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:10,45:0.82:55
chr4	113199075	rs701759	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	113199691	rs6834298	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	113352397	rs2074388	G	A	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:64,136:0.68:200
chr4	113352628	rs13148353	A	G	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:51,106:0.68:157
chr4	113352899	rs2074379	G	A	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:70,158:0.69:228
chr4	113353285	rs11726117	T	C	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:103,204:0.66:307
chr4	113353842	rs6841595	A	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr4	113356259	rs3815071	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr4	113359703	rs231247	A	G	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:101,205:0.67:306
chr4	113362316	rs1486868	A	G	6487.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:151,288:0.66:439
chr4	113362463	rs11730442	T	C	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr4	113436044	rs901474	T	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr4	113460927	rs2306775	C	A	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:48,113:0.70:161
chr4	113468564	rs78336146	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.827;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr4	113483446	rs6838559	C	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr4	113502707	rs58897804	T	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.102;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr4	113527072	rs62316615	A	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	113533796	rs9993534	T	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr4	113539969	rs7696816	T	C	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:104,46:0.31:150
chr4	113545165	rs6853745	T	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr4	113549989	rs12054518	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=5.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.766;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr4	113551181	.	G	GA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.098;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr4	113554385	rs13104310	A	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr4	113565835	rs79383654	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr4	113566101	.	C	CTTT	224.74	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	113568544	rs62317770	G	A	6635.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:107,281:0.72:388
chr4	113569135	rs13136737	G	T	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=1.575;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:159,59:0.27:218
chr4	113570639	rs4513633	C	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	113574478	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=1.840;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr4	113578609	rs1129065	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	114028149	rs17625836	G	A	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	114067145	rs7689214	G	A	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	114072148	rs10647173	G	GAA	4707.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	114072149	rs61478665	T	A	4716.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	114185878	rs11452087	C	CA	519.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-1.883;SOR=4.323;set=HC	GT:AD:AF:DP	1/1:5,32:0.86:37
chr4	114254454	.	A	ATG	213.73	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr4	114267023	rs9968405	G	A	6962.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr4	114286357	rs34201791	ATG	A	1141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.364;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.474;QD=11.65;ReadPosRankSum=0.031;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr4	114309839	.	C	T	26	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=2;NR=1;PP=26;QD=20.2570708491;SC=ACTTTTCTTCCGGAAAAAATT;SbPval=0.48;Source=Platypus;TC=10;TCF=8;TCR=2;TR=3;WE=114309847;WS=114309829;set=Platypus	GT:AD:AF:DP	0/1:7,3:0.30:10
chr4	114310106	rs70961814	C	CTG	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr4	114375411	rs200268292	AT	A	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=-0.168;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr4	114421712	rs17446453	C	T	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=3.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-2.174;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr4	114426315	rs4834348	G	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr4	114429407	rs11098193	C	T	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:99,37:0.27:136
chr4	114458402	rs734348	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr4	114530150	rs3764805	T	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr4	114530230	rs3764806	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,29:0.67:43
chr4	115544714	rs6851610	A	G	9865.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr4	115586696	rs4833463	A	G	124.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	115586972	.	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=3.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.866;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr4	115589159	rs6831964	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	115589302	rs11098261	A	G	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	115898522	rs13115130	A	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr4	119035948	rs5861378	T	TC	9069.73	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:3,306:0.99:309
chr4	119064668	rs3749506	G	A	450.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.49;ReadPosRankSum=-1.106;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr4	119161619	rs641962	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	119161795	rs617430	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.764;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-1.207;SOR=1.203;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr4	119174640	rs5861382	CT	C	227.92	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr4	119176703	rs7684275	A	G	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr4	119203221	rs17594503	C	T	6658.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:138,293:0.68:431
chr4	119216054	rs3828500	T	C	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr4	119217114	rs788665	C	G	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr4	119237348	rs2292597	T	C	5302.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:124,243:0.66:367
chr4	119239788	rs972813	A	G	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr4	119273712	rs13119545	C	G	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	119409830	rs112805522	A	G	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	119414431	rs17595090	A	T	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:61,142:0.70:203
chr4	119414828	rs145087150	G	A	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.92;MQRankSum=-1.698;QD=17.11;ReadPosRankSum=0.538;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:28,65:0.70:93
chr4	119428087	rs77576167	T	A	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr4	119435862	rs202102941	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.79;QD=24.41;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr4	119436576	rs371723815	CT	C	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-2.220;QD=6.85;ReadPosRankSum=-1.274;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr4	119475430	rs2787272	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr4	119609039	rs9968326	G	A	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr4	119609182	.	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.132;QD=2.99;ReadPosRankSum=-0.647;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr4	119609246	rs13130107	A	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr4	119613045	rs6821350	T	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr4	119615543	rs13111664	T	C	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr4	119625000	rs3733517	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr4	119625273	rs298995	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	119653822	rs2046779	G	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr4	119659284	rs7653962	T	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr4	119674051	rs71595318	G	GA	1290.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:50,83:0.62:133
chr4	119689549	.	C	CTTT	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=-0.000;DP=59;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.000;QD=9.53;ReadPosRankSum=0.141;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr4	119718988	rs11730993	C	T	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:168,83:0.33:251
chr4	119726949	rs2303513	G	A	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.629;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr4	119736598	rs6843524	C	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	119736796	rs2389688	A	C	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.248;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:190,77:0.29:267
chr4	119737860	rs3775840	G	A	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-1.024;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:145,39:0.21:184
chr4	119737885	rs3775839	T	C	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.737;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:168,56:0.25:224
chr4	119944566	rs138607209	C	CT	2080.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:40,103:0.72:143
chr4	119947961	rs70944826	AAAG	A	11573.73	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:107,286:0.73:393
chr4	119948046	rs17263971	A	C	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.826;QD=4.18;ReadPosRankSum=-0.545;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:250,86:0.26:336
chr4	119950975	rs111780874	A	AT	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.424;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:20,46:0.70:66
chr4	119951647	rs7698598	A	G	17827.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr4	119952955	rs61732241	C	T	6590.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:151,293:0.66:444
chr4	120071926	rs6853794	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	120072233	rs6828875	G	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.221;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.75;ReadPosRankSum=-0.300;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr4	120072238	rs6828349	A	G	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.85;ReadPosRankSum=-0.237;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr4	120079159	rs11721566	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr4	120079387	rs11729978	G	A	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:52,110:0.68:162
chr4	120107098	rs112369914	G	GT	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-2.246;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr4	120133712	rs6851130	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr4	120194718	rs35610634	G	GT	3606.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:13,174:0.93:187
chr4	120212207	rs35703931	T	TG	729.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr4	120212425	rs34076547	AT	A	660.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,32:0.97:33
chr4	120220085	rs111948904	A	AAAAC	1553.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr4	120225348	rs1397611	T	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr4	120240802	.	C	CATA	427.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=0.214;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr4	120241902	rs1799883	T	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.109;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:31,38:0.55:69
chr4	120275268	rs62320725	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr4	120275344	rs62320726	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr4	120275499	rs3817230	A	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr4	120423686	.	T	TA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.027;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr4	120446868	rs3832310	GA	G	742.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=5.202;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.976;QD=10.46;ReadPosRankSum=-0.286;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:22,49:0.69:71
chr4	120463856	rs2622497	A	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr4	120528327	rs3733526	G	A	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:87,44:0.34:131
chr4	120528524	rs10536068	ATCT	A	461.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr4	120548222	rs2953295	G	A	5251.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:96,238:0.71:334
chr4	120550059	rs11342908	GC	G	4885.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	120550125	rs10639733	A	AGGC	3605.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:8,150:0.95:158
chr4	120550144	rs2953291	A	G	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr4	120983259	rs2908989	T	C	7423.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:183,346:0.65:529
chr4	121631375	rs71597093	G	GAT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=0.778;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:34,5:0.13:39
chr4	121698199	rs3804163	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr4	121702270	rs3761721	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr4	121706201	rs12499000	A	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:166,73:0.31:239
chr4	121719584	rs66792327	T	TA	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr4	121737767	rs2136998	G	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr4	121738049	rs343192	T	C	1713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.184;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=5.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-2.072;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:284,105:0.27:389
chr4	121738182	rs237212	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chr4	121774515	rs3115310	T	C	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:28,89:0.76:117
chr4	121828519	rs1901135	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	121957559	rs34766411	G	A	6743.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:124,302:0.71:426
chr4	121957734	rs1397645	T	C	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:109,218:0.67:327
chr4	121958691	rs3733559	T	C	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:86,178:0.67:264
chr4	121960955	rs17353430	G	A	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=-0.045;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr4	121961031	rs3775914	A	G	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=-1.330;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:30,55:0.65:85
chr4	121961279	rs3775915	A	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=0.337;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr4	121966807	rs2276959	C	T	2260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.94;ReadPosRankSum=-1.904;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:25,101:0.80:126
chr4	122078516	rs6835790	G	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr4	122082481	rs11399717	A	AT	767.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr4	122137662	rs7663440	T	G	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.843;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr4	122148787	rs2044970	A	G	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr4	122250734	rs2302310	A	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:115,55:0.32:170
chr4	122251500	rs56169343	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr4	122254119	rs33977434	G	A	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.237;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.678;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:195,54:0.22:249
chr4	122255895	rs56351803	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr4	122257942	rs4558890	A	C	10624.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.01;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	122257942	.	ACATCTCAA	CCACCTCAG,CCATCTCAG	2305	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=10;MQ=60.0;NF=38,87;NR=21,61;PP=714,2305;QD=13.1774216078;SC=ATATGATTATACATCTCAACT;SbPval=0.71;Source=Platypus;TC=209;TCF=127;TCR=82;TR=59,148;WE=122257958;WS=122257932;set=Platypus	GT:AF:DP	0/1:0.28:209
chr4	122257945	rs143184159	T	C	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.933;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:174,74:0.30:248
chr4	122257950	rs2302309	A	G	11434.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr4	122258059	rs72668953	G	A	1556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.102;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:225,90:0.29:315
chr4	122261495	rs2276956	C	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	122261596	rs12651331	A	T	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.309;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:175,66:0.27:241
chr4	122261785	rs2276955	C	T	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	122301340	.	A	AGGAGAGAGAG	582.73	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr4	122590883	rs71599153	T	TA	1822.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.642;QD=9.44;ReadPosRankSum=-0.794;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:69,124:0.64:193
chr4	122590913	rs41278075	G	A	2939.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:44,133:0.75:177
chr4	122599249	rs3756281	G	A	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr4	122599447	rs13109053	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr4	122599755	rs3733649	T	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr4	122604496	rs11942224	T	C	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.044;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:35,32:0.48:67
chr4	122617493	rs2306413	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr4	122681373	rs4342205	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:58,24:0.29:82
chr4	122683007	rs4370153	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:162,61:0.27:223
chr4	122723106	rs67772833	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:86,37:0.30:123
chr4	122735225	rs141260260	C	CTTA	46.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,3:0.18:17
chr4	122737278	rs3217780	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr4	122737487	rs71985276	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=10.646;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-1.263;SOR=1.881;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr4	122739121	rs3217773	A	G	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr4	122740162	rs2071486	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr4	122740454	rs1396080	T	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-1.673;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr4	122741630	rs769244	A	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:58,30:0.34:88
chr4	122742217	rs769242	T	C	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr4	122749436	rs2706793	G	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:102,39:0.28:141
chr4	122749541	rs1507994	C	T	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=0.678;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:217,85:0.28:302
chr4	122769967	rs6824258	T	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:118,58:0.33:176
chr4	122782879	rs56159666	G	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:72,42:0.37:114
chr4	122872719	rs1396082	G	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:133,73:0.35:206
chr4	123108762	rs7670081	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	123113352	rs72687029	A	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr4	123140739	rs6534345	G	C	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr4	123159136	rs11455945	C	CA	86.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.593;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=9.542;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.58;ReadPosRankSum=-0.282;SOR=4.398;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr4	123184827	rs45515895	G	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	123185682	rs7664976	C	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	123237811	rs75396983	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:34,95:0.74:129
chr4	123246971	.	G	GT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=7.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.000;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr4	123280860	rs1127348	T	C	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	123283163	rs33976078	AAT	A	2344.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	123377482	rs2069763	C	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	123838758	rs12648093	A	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	123843716	rs13134412	T	C	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	123854495	rs1563706	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	123868279	rs11098682	G	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	123949556	rs1472949	G	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr4	124323738	rs300574	T	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr4	126238924	rs6847454	A	T	13058.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr4	126239986	rs1039808	C	T	11458.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr4	126240510	rs2940779	T	C	11467.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr4	126241871	rs2710555	C	T	14193.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr4	126315034	rs925243	T	C	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr4	126315282	rs925242	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	126327999	.	C	T	264.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr4	126329789	rs958415	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr4	126335978	rs4605670	G	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.45;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	126336990	rs10010000	G	T	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	126337555	rs7675556	A	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	126355609	rs7656135	T	G	4632.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr4	126369872	rs988863	G	C	14538.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr4	126372742	rs1567047	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=2.111;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:157,43:0.21:200
chr4	126373789	rs12650153	G	A	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	126384905	rs10010645	A	C	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr4	126389627	rs6814158	A	G	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	126390010	rs35304021	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr4	126390022	rs34927272	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr4	126397321	rs17009761	C	T	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:58,162:0.74:220
chr4	126400825	rs1506361	G	T	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	126402921	rs11098815	T	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=2.045;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:94,37:0.28:131
chr4	126411002	.	C	CTTTTT	142	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=21;HapScore=2;MGOF=27;MMLQ=24;MQ=54.14;NF=4;NR=1;PP=142;QD=29.0;SC=AGTATAAGCTCTTTTTTTTTT;SbPval=0.8;Source=Platypus;TC=14;TCF=10;TCR=4;TR=5;WE=126411010;WS=126410992;set=Platypus	GT:AD:AF:DP	1/1:9,5:0.36:14
chr4	126412575	rs1014866	A	G	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	128544514	rs12650360	C	G	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr4	128544696	rs4834207	A	G	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	128565000	rs3749507	A	G	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:242,100:0.29:342
chr4	128584580	rs4833380	G	A	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.998;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:46,15:0.25:61
chr4	128621272	rs12331481	A	C	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr4	128621274	rs148573862	A	T	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr4	128627050	rs7683627	C	T	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr4	128635022	rs34240473	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr4	128665981	rs769293	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr4	128689936	rs2305958	A	G	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.604;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr4	128723042	rs1380154	T	C	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=-0.655;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:77,39:0.34:116
chr4	128803159	rs3811741	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr4	128807219	rs3811740	T	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:182,71:0.28:253
chr4	128814425	rs57995643	A	AT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.446;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=11.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.604;SOR=3.551;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr4	128814964	rs17012739	G	T	1912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.375;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:346,128:0.27:474
chr4	128817905	.	G	GT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=4.934;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.568;QD=1.76;ReadPosRankSum=0.518;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr4	128819618	rs41278099	A	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.088;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:63,18:0.22:81
chr4	128861133	rs115275192	T	C	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.085;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:24,29:0.55:53
chr4	128923001	rs35200534	GT	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=0.033;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr4	128932965	rs143560884	TG	T	522.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr4	128995989	rs6534661	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr4	129012181	rs2306054	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=1.420;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr4	129012638	rs1064205	A	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.231;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr4	129029009	rs34678812	G	GA	712.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.183;QD=4.35;ReadPosRankSum=-1.048;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:115,49:0.30:164
chr4	129043204	rs12508837	C	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-1.263;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr4	129043286	rs3733320	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.578;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=0.334;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:89,41:0.32:130
chr4	129043601	rs3832282	T	TG	2031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=0.087;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:86,55:0.39:141
chr4	129043614	rs3733321	G	T	2487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.345;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.98;ReadPosRankSum=0.834;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:110,68:0.38:178
chr4	129043617	rs3733322	T	G	2473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.010;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:114,70:0.38:184
chr4	129043809	rs12509092	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr4	129100643	rs12645577	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:190,84:0.31:274
chr4	129120708	rs145541337	C	T	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:108,196:0.64:304
chr4	129776983	rs76983300	C	CT	193.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr4	129805716	rs167618	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr4	129867280	rs10028124	T	A	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr4	129873433	rs10857134	A	G	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr4	129873636	rs72683673	A	G	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:247,124:0.33:371
chr4	129878342	rs35006492	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr4	129924977	rs3113487	C	A	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-2.478;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:190,89:0.32:279
chr4	129961486	rs149385189	G	GC	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr4	130023759	rs1757935	A	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:106,70:0.40:176
chr4	130030652	rs337277	A	G	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.380;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:167,41:0.20:208
chr4	133357204	rs17494286	A	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr4	133367588	rs1827132	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	133367655	rs1827133	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:31,45:0.59:76
chr4	133368361	rs70948202	T	TC	1115.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr4	134074058	rs3749589	A	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.578;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:40,8:0.17:48
chr4	134076285	rs2271172	C	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr4	134085208	rs4461537	C	T	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.015;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr4	135121066	rs11099273	T	G	1819.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,79:0.73:108
chr4	135121368	rs2044116	G	T	6479.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:129,285:0.69:414
chr4	135121601	rs10009368	C	T	6340.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:116,284:0.71:400
chr4	139093228	rs4504306	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr4	139100372	rs4479754	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	139103366	rs10016559	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	139140388	rs10025342	G	A	10021.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr4	139140494	rs6838248	G	C	3318.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:74,157:0.68:231
chr4	139153317	rs6823642	T	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr4	139482958	rs7694744	G	T	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:49,128:0.72:177
chr4	139483177	rs7679047	T	G	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:23,63:0.73:86
chr4	139937071	rs3749515	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	139966663	.	A	ATTTT	109.94	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=27.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	140005294	rs4863628	A	G	24515.77	.	AC=2;AF=1.00;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	1/1:0,929:1.00:929
chr4	140039107	rs60424237	C	CA	522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.500;QD=14.13;ReadPosRankSum=1.679;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr4	140187661	.	CT	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-1.886;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:85,29:0.25:114
chr4	140263849	rs11944434	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	140270875	rs2044810	G	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	140417471	rs4863655	G	T	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	140417671	rs4863656	G	C	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	140450204	rs35062373	G	A	2791.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:65,125:0.66:190
chr4	140587261	.	C	CGT	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=0.700;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr4	140587263	rs2646047	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.618;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr4	140587271	.	C	CGCGCGCGCGT	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=5.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.169;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:61,9:0.13:70
chr4	140625323	rs925424	A	G	6040.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr4	140651584	rs5862430	TCTG	T	7319.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:4,276:0.99:280
chr4	140809656	rs6839194	C	A	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,85:0.65:131
chr4	140809710	rs3775241	C	G	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=1.195;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:48,114:0.70:162
chr4	140810334	rs3733381	T	C	3718.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:56,154:0.73:210
chr4	140810637	rs11100342	C	T	6187.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:112,274:0.71:386
chr4	140810700	rs11729794	C	T	5287.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:90,225:0.71:315
chr4	140811063	.	TTGCTGCTGCTGC	TTGCTGCTGCTGCTGC,T	906.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=399;set=Intersection	GT:AF:DP	0/1:0.17:312
chr4	140811083	rs373804063	GC	G	9342.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.138;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.89;MQRankSum=6.754;QD=24.39;ReadPosRankSum=3.145;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:126,257:0.67:383
chr4	140811085	rs58287721	TGCTGCTGCTGC	T	8733.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=61.84;MQRankSum=7.920;QD=23.23;ReadPosRankSum=5.326;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:133,243:0.65:376
chr4	140811135	rs3733382	T	C	10575.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:107,265:0.71:372
chr4	141290574	rs2668577	C	T	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	141290676	rs113510871	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr4	141311960	rs358329	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	141321425	rs2252427	A	G	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	141372485	rs6536966	T	C	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	141383034	rs10644682	T	TAC,TACAC	3101.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.26;ReadPosRankSum=1.134;SOR=0.839;set=HC	GT:AD:AF:DP	1/2:12,33,61:0.31,0.58:106
chr4	141403562	rs111869533	T	C	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=0.173;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:18,33:0.65:51
chr4	141448595	.	C	CT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.733;QD=1.81;ReadPosRankSum=0.232;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr4	141448705	.	T	TA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.505;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr4	141458485	rs882930	T	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	141481203	.	A	AT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.008;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:161,31:0.16:192
chr4	141484765	rs201917162	A	AT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=-0.948;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr4	141489262	.	CGTGTGTGTGTGT	C,CGTGT	591.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=34.81;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:1,10,6:0.59,0.35:17
chr4	141543997	rs1560440	G	A	7803.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr4	141549393	rs2291711	C	A	7430.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr4	141554949	rs10002459	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	141555062	rs6851737	G	T	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr4	141583176	rs28465061	C	T	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	141592206	rs4956473	A	G	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	141598126	rs2303911	C	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:178,81:0.31:259
chr4	141598290	rs2303912	A	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr4	141600320	rs4956329	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr4	141677006	rs70943501	A	AG	3507.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr4	141771715	rs374724826	GGT	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.300;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr4	141847077	rs13138724	G	A	2442.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:61,114:0.65:175
chr4	141847110	rs13120735	T	C	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:77,141:0.65:218
chr4	141847279	rs12503723	G	A	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr4	141847350	rs28372287	C	T	290.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr4	141866754	rs71584389	ATACATATATATAC	A	94.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;MQ=63.51;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	141868736	rs2321687	G	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr4	141869062	rs6857782	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-2.920;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr4	141870648	rs4956494	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr4	141924720	rs200083054	TACACACACAC	T	1278.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.74;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:17,26:0.60:43
chr4	141927365	rs138771695	CATATATATACACATATATATGTGTATGTAT	C	2488.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	141940074	rs4245936	T	C	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr4	141940234	.	A	G	28	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=12;MMLQ=23;MQ=60.0;NF=0;NR=3;PP=28;QD=20.9237375157;SC=ATATATATATATGGAACTTTA;SbPval=1.0;Source=Platypus;TC=8;TCF=2;TCR=6;TR=3;WE=141940242;WS=141940224;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr4	142000014	.	C	CATAT	128.74	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr4	142150860	rs7684664	T	G	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:53,156:0.75:209
chr4	142150894	rs62327566	T	G	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:36,99:0.73:135
chr4	142151262	rs3756106	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	142151573	rs732624	G	A	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	142155214	rs3822128	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr4	142640462	rs1493013	CC	TT	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;JOINED;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chr4	142640538	rs2254514	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=3.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.437;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:143,50:0.26:193
chr4	142640637	rs2857261	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-1.221;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr4	142651159	rs12510030	T	C	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:201,92:0.31:293
chr4	142651265	rs17007610	T	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:81,37:0.31:118
chr4	142949864	rs34280694	A	C	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.730;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr4	143003155	rs11446749	G	GA	1863.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	143007197	rs336325	C	T	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	143007419	rs336324	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr4	143007460	rs336323	T	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	143044666	rs2645786	A	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	143130034	rs1907123	A	T	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	143130219	rs1994217	T	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	143181731	.	T	TA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.788;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr4	143181748	rs1907111	T	A	1094.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-1.864;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:12,58:0.83:70
chr4	143226768	rs2627808	G	T	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr4	143226784	rs2636640	G	A	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr4	143235865	rs3756122	C	G	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.586;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:26,56:0.68:82
chr4	143268528	rs882004	T	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr4	143268702	rs1908968	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=0.467;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:19,49:0.72:68
chr4	143324036	rs1982965	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	143324094	rs1982966	G	A	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=6.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=1.216;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:126,83:0.40:209
chr4	143326312	rs138973882	AAGAG	A,AAGAGAGAGAG	995.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=41;set=Intersection	GT:AF:DP	1/2:0.58,0.33:33
chr4	143344785	rs3775712	T	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.974;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr4	143348523	rs3775717	A	G	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.63;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr4	143348680	rs3775718	C	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.227;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr4	143350157	.	C	T	106.85	.	AC=1;AF=0.500;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr4	144125549	.	C	CT	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.890;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:84,29:0.26:113
chr4	144130750	rs7670426	T	C	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.397;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:35,23:0.40:58
chr4	144135718	rs4285045	G	A	1409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.861;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:232,89:0.28:321
chr4	144136193	rs10000911	T	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr4	144136206	rs34461753	A	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr4	144258574	rs13137712	G	A	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chr4	144264722	rs300919	T	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.369;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:179,55:0.24:234
chr4	144317039	rs2048408	C	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=-0.058;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr4	144380399	rs13114896	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr4	144381401	rs3795246	A	G	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr4	144435228	rs377525719	G	T	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:95,51:0.35:146
chr4	144447630	rs7694156	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr4	144456124	rs6818251	A	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr4	144459637	rs4690724	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	144466050	rs7692376	A	G	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.45;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	144467104	rs13139128	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	144469383	rs2088415	A	G	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	144471378	rs70953739	C	CT	191.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-1.814;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr4	144471402	rs1979776	T	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	144617842	rs1545437	G	T	4023.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:49,172:0.78:221
chr4	144618610	rs1034494	G	C	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	144620758	rs61427459	C	T	3120.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:65,139:0.68:204
chr4	144621026	.	A	G	7605.77	.	AC=1;AF=0.500;AN=2;DP=544;set=Intersection	GT:AD:AF:DP	0/1:187,356:0.66:543
chr4	144621199	rs11100802	A	G	5964.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:111,248:0.69:359
chr4	144621779	rs55935372	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr4	144794616	rs66570349	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.068;QD=3.59;ReadPosRankSum=1.592;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:88,31:0.26:119
chr4	144797848	rs6537203	G	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-2.001;QD=1.99;ReadPosRankSum=-0.684;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr4	144799840	rs3775246	G	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:50,41:0.45:91
chr4	144801465	rs181633886	T	C	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr4	144801503	.	TA	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=5;HapScore=1;MGOF=5;MMLQ=28;MQ=52.45;NF=37;NR=4;PP=2954;QD=20;SC=TCCCCTAAAATAGGGTTGCAT;SbPval=0.99;Source=Platypus;TC=136;TCF=98;TCR=38;TR=41;WE=144801530;WS=144801493;set=Platypus	GT:AD:AF:DP	0/1:95,41:0.30:136
chr4	144801510	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=27;MQ=54.09;NF=53;NR=9;PP=2962;QD=20;SC=AAATAGGGTTGCATCACAAAA;SbPval=0.96;Source=Platypus;TC=200;TCF=149;TCR=51;TR=62;WE=144801530;WS=144801493;set=Platypus	GT:AD:AF:DP	0/1:138,62:0.31:200
chr4	144801522	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=5;HapScore=1;MGOF=5;MMLQ=27;MQ=55.3;NF=78;NR=24;PP=2962;QD=20;SC=ATCACAAAAACGATTTCGGAG;SbPval=0.88;Source=Platypus;TC=286;TCF=196;TCR=90;TR=102;WE=144801530;WS=144801493;set=Platypus	GT:AD:AF:DP	0/1:184,102:0.36:286
chr4	144801662	rs1132785	C	G	16044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-10.504;QD=19.35;ReadPosRankSum=0.924;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:401,428:0.52:829
chr4	144801671	rs146400730	A	C	15551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-10.829;QD=20.44;ReadPosRankSum=-1.199;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:365,396:0.52:761
chr4	144801728	rs201075956	CA	TG	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;JOINED;set=Intersection	GT:AD:AF:DP	0/1:145,84:0.37:229
chr4	144802964	rs6824687	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-2.997;QD=3.72;ReadPosRankSum=-1.740;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr4	144803130	rs6819885	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.395;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.768;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-6.334;QD=0.77;ReadPosRankSum=-2.095;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:96,16:0.14:112
chr4	144809800	rs143390057	C	A	1577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.34;MQRankSum=-2.772;QD=4.15;ReadPosRankSum=-1.523;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:274,106:0.28:380
chr4	144811428	rs4095436	A	G	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr4	144811470	rs4095435	A	G	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;MQ=57.03;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	144824194	rs138724961	T	C	12963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.699;ClippingRankSum=0.000;DB;DP=1387;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=47.94;MQRankSum=-35.596;QD=9.35;ReadPosRankSum=0.959;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:702,684:0.49:1386
chr4	144824269	rs1899967	C	T	29697.77	.	AC=2;AF=1.00;AN=2;DB;DP=872;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.25;QD=34.06;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,872:1.00:872
chr4	144824269	.	CTCCC	TTCCC,TTCCT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=24;MQ=46.26;NF=352,150;NR=489,229;PP=2962,2944;QD=20;SC=CAGAAAATAACTCCCTGCTAC;SbPval=0.53;Source=Platypus;TC=842;TCF=352;TCR=490;TR=841,379;WE=144824281;WS=144824259;set=Platypus	GT:AF:DP	0/1:1.00:842
chr4	144824273	rs6818201	C	T	8151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.119;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=48.44;MQRankSum=26.111;QD=9.98;ReadPosRankSum=-0.868;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:423,394:0.48:817
chr4	144824308	rs202179013	TG	CC	6802.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;JOINED;set=Intersection	GT:AD:AF:DP	0/1:194,180:0.48:374
chr4	144824346	rs4091835	T	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:92,35:0.28:127
chr4	144917514	rs1980037	A	C	5559.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr4	144918674	rs55682721	T	G	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr4	144918712	rs1132783	C	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,96:0.47:204
chr4	144918867	rs1473055	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:104,102:0.50:206
chr4	144918893	rs4835126	A	G	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.158;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=9.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=-0.434;SOR=1.517;set=HC	GT:AD:AF:DP	0/1:81,50:0.38:131
chr4	144918900	rs1849110	G	A	3913.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr4	144920480	rs7661933	A	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:79,97:0.55:176
chr4	144920596	rs7683365	G	A	2703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-1.612;QD=10.90;ReadPosRankSum=1.244;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:115,133:0.54:248
chr4	144920638	rs7662277	A	T	2191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-3.461;QD=11.07;ReadPosRankSum=-1.017;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:92,106:0.54:198
chr4	144921607	rs1849119	C	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	144938033	rs5862681	A	AT	2022.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.09;QD=35.49;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	144938081	rs28373876	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.49;QD=29.68;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	144938120	rs4561879	TG	CC	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.70;QD=43.22;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr4	145020647	rs13135548	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:79,75:0.49:154
chr4	145020658	rs13110331	A	G	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:94,85:0.47:179
chr4	145034943	rs370775492	C	T	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:151,146:0.49:297
chr4	145038318	rs62334650	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	145040784	rs62334651	T	C	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr4	145040962	rs6857144	CA	GT	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr4	145040999	rs62334652	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	145041011	rs70953778	AC	A	1429.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	145041686	rs4867	A	G	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr4	145041707	rs7658293	CT	AC	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.59;QD=44.22;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	145041720	rs7682260	A	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.56;QD=32.90;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	145041741	rs4449373	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.92;QD=43.51;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	145041750	rs45468202	A	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.61;QD=41.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	145579907	rs6537301	G	A	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:70,77:0.52:147
chr4	145655769	.	T	TA	20	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5097;HP=13;HapScore=2;MGOF=43;MMLQ=27;MQ=60.0;NF=2;NR=0;PP=20;QD=12.5;SC=CTGAGTCACTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=2;WE=145655777;WS=145655765;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr4	145974935	.	GA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.977;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:75,17:0.18:92
chr4	146031236	.	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.76;ReadPosRankSum=1.177;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr4	146046138	rs4835203	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	146048583	rs1378314	T	G	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr4	146065006	rs9991890	C	T	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	146073850	rs12501862	C	T	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.143;QD=8.19;ReadPosRankSum=3.134;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:62,49:0.44:111
chr4	146076632	rs36225839	TA	T	688.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:84,55:0.40:139
chr4	146436286	.	C	CTGTG	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=5.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.455;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr4	146436322	.	G	GTGTGTC	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=3.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=0.581;SOR=2.461;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr4	146463966	rs1497126	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	146475243	rs10715854	CT	C	736.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.042;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.869;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.456;QD=9.96;ReadPosRankSum=-0.411;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:14,60:0.81:74
chr4	146560236	rs4835011	A	G	4988.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:254,251:0.50:505
chr4	146572140	rs11721510	G	A	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr4	146576418	rs2270655	G	C	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:145,126:0.46:271
chr4	146601349	rs17020528	C	T	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:163,179:0.52:342
chr4	146601680	rs7683750	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:50,35:0.41:85
chr4	146601701	rs7682360	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr4	146617907	rs11733094	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:59,63:0.52:122
chr4	146681872	rs10715391	GT	G	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.672;QD=9.48;ReadPosRankSum=0.030;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:13,47:0.78:60
chr4	146686396	rs76846242	C	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr4	146686414	rs79822587	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr4	146697205	rs4835257	A	C	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:45,60:0.57:105
chr4	146770400	rs28497499	T	A	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=7.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=1.077;SOR=0.196;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr4	146806762	rs375112310	CAGAGAG	C,CAGAG	958.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;QD=29.05;SOR=1.220;set=HC	GT:AD:AF:DP	1/2:0,20,13:0.61,0.39:33
chr4	147104263	rs919483	A	G	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr4	147110652	rs17757715	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	147110891	rs7745	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr4	147110956	rs17814234	A	G	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr4	147177822	rs28406249	A	G	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr4	147177865	rs58191358	A	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr4	147177868	rs34063596	T	TC	3457.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr4	147204535	rs13435691	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr4	147213912	rs4516736	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	147214029	rs12711434	C	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr4	147425114	rs7439061	A	T	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:87,89:0.51:176
chr4	147431302	rs6816737	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr4	147560457	.	T	TGGC	5739.73	.	AC=1;AF=0.500;AN=2;DP=366;set=Intersection	GT:AD:AF:DP	0/1:28,252:0.90:280
chr4	147560692	rs1504360	T	A	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	148457009	rs71594223	T	TTC	3050.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.350;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=5.175;MLEAC=2;MLEAF=1.000;MQ=61.25;MQRankSum=1.132;QD=18.16;ReadPosRankSum=0.104;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:10,158:0.94:168
chr4	148461037	rs5333	T	C	6541.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	148461073	rs5334	G	A	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr4	148461354	.	C	A	179.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr4	148461378	rs2292765	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	148463840	rs5335	G	C	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:136,166:0.55:302
chr4	148560357	rs2654935	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	148589677	rs2718454	C	T	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr4	148591769	rs2036502	G	T	7997.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr4	148601729	rs7666065	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	148604886	rs6535547	G	A	86.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.89;ReadPosRankSum=-0.191;SOR=1.773;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr4	148778685	rs11410393	G	GT	870.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,42:0.93:45
chr4	148787669	rs4240341	G	A	162.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	148796464	rs7663294	C	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	148800299	rs13147854	A	G	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr4	148827697	rs35780665	T	TA	2370.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:15,125:0.89:140
chr4	148827747	rs12509618	A	C	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr4	148827973	rs11099672	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr4	148831070	rs4627844	A	G	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	148968262	.	A	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.352;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:92,14:0.13:106
chr4	148985720	rs3775327	T	C	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	148985798	.	T	TGCGTTAGGCTCCCAGACCCCAATGCCAGGG	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.19;ReadPosRankSum=0.712;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	149002016	rs10708334	AT	A	2249.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	149073555	rs2272089	C	T	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	149076195	rs7668847	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr4	149116035	rs4835500	A	G	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	149356516	rs5525	A	G	10073.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr4	149357475	rs5522	C	T	12255.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr4	149358014	rs2070951	G	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr4	151119353	rs1124359	G	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr4	151120062	rs35851047	A	AC	308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=17.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=1.504;SOR=4.660;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr4	151145556	.	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=7.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.829;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr4	151161470	rs11931842	A	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:158,136:0.46:294
chr4	151161490	rs6838238	T	C	10545.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,408:1.00:408
chr4	151161502	rs6813035	G	T	11384.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr4	151177340	rs13152819	CC	TG	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	151177428	rs13101461	C	G	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.927;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=0.486;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr4	151177432	rs13101258	A	C	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.85;SOR=2.876;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	151231371	rs1813134	T	C	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr4	151408800	rs7674989	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr4	151505322	rs13105060	T	A	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr4	151511715	rs4401437	T	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	151656589	rs1993109	C	T	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr4	151765243	rs186080	G	A	8277.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr4	151773728	.	G	C	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.719;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:221,53:0.19:274
chr4	151819051	rs191462957	A	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr4	151829659	rs1201207	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	152024326	rs4696658	T	G	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr4	152048936	rs11099782	A	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,62:0.97:64
chr4	152053408	rs7664483	G	A	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr4	152069406	rs150487703	TACACACACACACACAC	T	796.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr4	152070633	rs3792611	T	A	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	152201018	rs148861921	G	GCAGGT	5024.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:113,126:0.53:239
chr4	152201053	rs36097019	G	A	2922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.568;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.419;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.048;QD=10.40;ReadPosRankSum=-1.623;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:133,148:0.53:281
chr4	152201204	rs1875308	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	152203664	rs6849871	C	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr4	152212486	rs13126069	C	T	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:207,211:0.50:418
chr4	152212603	rs2407221	T	G	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr4	152212704	rs13102005	T	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr4	152583907	rs11378262	C	CT	999.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.664;QD=9.52;ReadPosRankSum=0.523;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:33,72:0.69:105
chr4	152609694	rs6535814	A	G	2568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.88;ReadPosRankSum=0.421;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:57,66:0.54:123
chr4	152609700	rs6535815	A	C	2602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.18;ReadPosRankSum=0.419;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:60,69:0.53:129
chr4	152609920	rs11292952	TA	T	984.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.031;QD=6.65;ReadPosRankSum=-0.033;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:65,83:0.56:148
chr4	152609998	rs11390610	C	CA	811.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr4	152626515	rs113829752	TA	T	701.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=2.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-1.554;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:33,57:0.63:90
chr4	152643184	rs6817586	G	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr4	152679816	rs3828546	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr4	152681952	rs1429559	A	G	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr4	153247486	.	CTT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.656;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.12;ReadPosRankSum=0.227;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr4	153252061	rs10033601	A	G	1719.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr4	153267968	rs2714803	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr4	153268227	.	CA	C	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.865;QD=1.28;ReadPosRankSum=0.033;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:84,35:0.29:119
chr4	153549717	.	T	TA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016;ClippingRankSum=-0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.64;ReadPosRankSum=-0.366;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr4	153549745	rs138358407	C	A	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=-0.319;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr4	153565641	rs12650966	A	G	1500.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:84,72:0.46:156
chr4	153690727	rs138411753	G	A	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=0.785;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:112,88:0.44:200
chr4	153690842	rs4696354	T	C	11045.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr4	153750918	rs10010297	G	A	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr4	153793489	rs35670437	CT	C	842.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	153802060	rs80127385	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	153870267	.	TAATAATAATAAGAAGAAGAAGAAG	T	598.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.13;MQRankSum=1.432;QD=6.24;ReadPosRankSum=1.255;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:61,35:0.36:96
chr4	153870276	.	TAAGAAGAAGAAGAAGAAGAAGAAG	T	1343.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.776;MLEAC=1;MLEAF=0.500;MQ=61.03;MQRankSum=-2.080;QD=9.46;ReadPosRankSum=-2.715;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:93,49:0.35:142
chr4	153870355	rs12651510	T	C	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=28.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr4	153881835	rs3811834	C	T	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr4	153884092	.	G	GGT	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=4.707;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.018;QD=8.04;ReadPosRankSum=-0.996;SOR=0.325;set=HC	GT:AD:AF:DP	0/1:49,37:0.43:86
chr4	153896358	rs3811833	C	T	15880.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr4	153897770	rs3811832	G	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr4	154091111	rs34284701	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	154197234	rs2289409	T	G	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:181,159:0.47:340
chr4	154216710	rs893805	G	A	6025.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:306,285:0.48:591
chr4	154271324	rs1440079	A	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr4	154276694	rs9307906	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr4	154276856	rs10471075	A	G	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:76,80:0.51:156
chr4	154387597	rs71620317	G	C	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr4	154471113	rs9996529	G	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	154476924	rs6828373	T	C	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=2.071;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:105,94:0.47:199
chr4	154525458	rs1063151	C	T	4489.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:233,221:0.49:454
chr4	154533506	rs36113034	C	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=-0.577;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:85,47:0.36:132
chr4	154542161	rs3761657	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	154542814	rs7663417	G	T	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	154557383	rs142471814	ATG	A	4485.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr4	154557405	rs3214684	CT	C	3155.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:7,156:0.96:163
chr4	154631543	rs2405432	A	T	11254.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr4	154631563	rs1339	T	C	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:229,215:0.48:444
chr4	154633580	rs33952548	GA	G	1792.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr4	154641489	rs1439166	T	C	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.548;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:30,39:0.57:69
chr4	154644443	.	C	G	1783.77	.	AC=1;AF=0.500;AN=2;DP=204;set=Intersection	GT:AD:AF:DP	0/1:119,84:0.41:203
chr4	154644454	rs1456384	T	C	6550.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr4	154709480	rs3810765	G	A	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:136,113:0.45:249
chr4	154709856	rs6535952	A	C	7270.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr4	155156207	rs7655799	G	A	12744.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr4	155161666	rs6535989	C	T	8723.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr4	155176704	.	G	A	3824.77	.	AC=1;AF=0.500;AN=2;DP=437;set=Intersection	GT:AD:AF:DP	0/1:241,195:0.45:436
chr4	155190927	rs11412936	T	TA	74.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr4	155218941	rs115559096	C	T	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr4	155219382	rs116029479	G	C	5368.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:195,238:0.55:433
chr4	155219549	rs74321456	T	G	3771.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:173,178:0.51:351
chr4	155225784	.	AA	CA	991	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=6;HapScore=2;MGOF=2;MMLQ=25;MQ=59.85;NF=6,17;NR=2,1;PP=637,991;QD=80.5;SC=CTGTCTTAAAAAAACAAACAA;SbPval=0.47;Source=Platypus;TC=26;TCF=21;TCR=5;TR=8,18;WE=155225792;WS=155225779;set=Platypus	GT:AD:AF:DP	0/1:17,18:0.51:35
chr4	155225784	.	AA	AAAACAAACA	991	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=6;HapScore=2;MGOF=2;MMLQ=25;MQ=59.85;NF=6,17;NR=2,1;PP=637,991;QD=80.5;SC=CTGTCTTAAAAAAACAAACAA;SbPval=0.47;Source=Platypus;TC=26;TCF=21;TCR=5;TR=8,18;WE=155225792;WS=155225779;set=Platypus	GT:AD:AF:DP	0/1:18,8:0.31:26
chr4	155225784	rs1352715	A	C,AAAACAAAC	1292.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.71;QD=34.94;SOR=2.494;set=HC	GT:AD:AF:DP	1/2:0,18,19:0.49,0.51:37
chr4	155226421	rs12507663	C	A	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr4	155241438	rs11935503	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr4	155241572	rs11935573	G	A	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:210,215:0.51:425
chr4	155241735	rs79535970	C	T	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:112,140:0.56:252
chr4	155242383	rs62331873	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr4	155243573	rs13109747	C	T	3746.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:175,187:0.52:362
chr4	155243604	rs1352714	T	C	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr4	155244401	rs140019361	TTTTG	T	511.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr4	155244462	rs74430037	C	T	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-1.095;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr4	155244475	rs12500437	G	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.781;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=-0.073;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr4	155249179	rs76750997	G	C	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr4	155250660	rs75602216	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr4	155253011	rs72966161	A	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr4	155256177	rs6858157	A	G	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:171,182:0.52:353
chr4	155256205	rs6858712	G	A	7259.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr4	155264637	rs62331892	G	A	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:144,142:0.50:286
chr4	155295154	rs140484732	CAAA	C	1322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=16.561;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=17.40;ReadPosRankSum=1.317;SOR=1.396;set=HC	GT:AD:AF:DP	0/1:16,60:0.79:76
chr4	155298643	rs75194430	A	G	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=0.703;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:29,35:0.55:64
chr4	155305491	rs34927139	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,73:0.51:142
chr4	155410409	rs13121403	A	G	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	155410909	rs35172627	A	G	12737.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr4	155411104	rs6536016	A	C	32649.77	.	AC=2;AF=1.00;AN=2;DB;DP=1265;set=Intersection	GT:AD:AF:DP	1/1:1,1258:1.00:1259
chr4	155411649	rs13130030	G	A	16810.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,634:1.00:634
chr4	155411939	rs17373874	A	C	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr4	155412464	rs13149269	C	T	7537.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr4	155458728	rs7668014	C	T	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:82,94:0.53:176
chr4	155459194	rs7668818	A	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr4	155460097	rs62330409	T	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr4	155460459	rs12642770	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr4	155461113	rs7671792	T	C	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:108,108:0.50:216
chr4	155461687	rs62330410	A	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr4	155462148	rs7700005	A	T	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,76:0.50:152
chr4	155465535	rs62330413	A	G	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:86,102:0.54:188
chr4	155466869	rs62330417	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:36,39:0.52:75
chr4	155466935	rs11935584	T	C	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:87,86:0.50:173
chr4	155467187	rs11940724	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr4	155469959	rs11451354	G	GA	2040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=4.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-1.298;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:141,156:0.53:297
chr4	155505241	rs148317511	A	AGAAGACAGAGTGCTCCCATTCCCACTTC	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.965;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr4	155507590	rs6050	T	C	13482.77	.	AC=1;AF=0.500;AN=2;DB;DP=1316;set=Intersection	GT:AD:AF:DP	0/1:664,644:0.49:1308
chr4	155508627	rs2070018	G	A	16228.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr4	155510224	rs7656433	A	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	155511897	rs2070011	T	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:62,84:0.58:146
chr4	155525276	rs2066865	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr4	155525970	rs1049636	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr4	155529474	rs2066860	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr4	155718171	rs57686041	A	ATT	368.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr4	155719919	rs33918255	AT	A	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.272;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:31,39:0.56:70
chr4	155720274	rs156502	T	C	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:211,179:0.46:390
chr4	155747891	rs34828322	CTTT	C	3876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.775;QD=13.41;ReadPosRankSum=-0.355;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:114,175:0.61:289
chr4	156135676	rs1047214	C	T	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr4	156136027	rs2880415	C	T	9455.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr4	156271269	rs17377470	A	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-2.019;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:53,35:0.40:88
chr4	156273768	rs2305050	T	C	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	156274377	rs1058992	T	C	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-1.206;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:52,48:0.48:100
chr4	156274584	rs10004913	T	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	156274606	rs33994283	CATT	C	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr4	156276076	rs3775248	A	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-1.122;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr4	156276096	rs3775249	G	A	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	156276289	rs2341894	C	T	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	156276317	rs2880181	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	156276433	rs2341893	C	T	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	156276742	rs34426198	ACT	A	755.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	156276788	rs6857158	G	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr4	156276841	rs6834126	T	C	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr4	156281666	rs111798466	ACT	A	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr4	156283302	rs6829123	G	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	156289900	rs3733390	C	T	5197.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:260,258:0.50:518
chr4	156289917	rs3733391	G	A	4657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=466;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.08;ReadPosRankSum=2.069;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:230,232:0.50:462
chr4	156290032	rs3733392	G	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr4	156294624	rs34053877	G	GA	244.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr4	156295965	rs11723273	T	C	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:69,66:0.49:135
chr4	156296868	rs986416	T	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,66:0.47:139
chr4	156297060	rs17377679	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr4	156617994	rs2306557	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,58:0.55:105
chr4	156632391	rs11944673	A	G	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr4	156634844	rs71605258	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr4	156643183	rs2306554	C	A	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:230,232:0.50:462
chr4	156680340	rs1459845	G	T	3566.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:94,162:0.63:256
chr4	156706412	rs17033527	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:50,52:0.51:102
chr4	156706482	rs1459853	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	156721198	rs2229202	C	T	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:230,190:0.45:420
chr4	156757789	rs113590442	G	GA,GAA	590.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	1/1:0.97:29
chr4	156757818	rs1399046	A	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	156784970	rs932081	C	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr4	156787214	rs1399044	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	156787340	rs6848883	G	A	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	156826166	rs2137778	C	G	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr4	156832841	rs12502494	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	156839462	rs2292537	C	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	156847230	rs1543108	A	G	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=32.53;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	156847237	rs10714400	AG	A	3926.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr4	157563266	rs7658059	A	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	157563398	rs75444899	C	A	2777.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:135,138:0.51:273
chr4	158005876	rs7667450	G	A	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr4	158041591	rs11932115	G	A	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	158041896	rs3775724	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	158043559	rs41280501	C	T	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	158065038	rs12507409	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr4	158142740	rs28585580	T	G	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:55,42:0.43:97
chr4	159076679	rs6830475	C	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	159076826	rs6830702	C	T	10393.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr4	159538140	.	C	CA	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.030;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr4	159567888	rs115235817	T	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr4	159568383	rs13111939	A	G	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr4	159601676	rs11559290	C	T	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	159640565	rs7666472	G	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr4	159690622	rs55960593	C	T	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:20,8:0.29:28
chr4	159690640	rs59971723	C	A	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr4	159858736	rs11737459	T	A	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr4	159894199	rs1820511	T	A	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr4	159894250	rs619128	C	T	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	159894305	rs662473	T	C	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr4	159894391	rs17037864	G	A	2144.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:125,102:0.45:227
chr4	160050068	rs200262378	TGG	T	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr4	160050096	rs35299335	G	A	134.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr4	160107918	rs10014197	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr4	160114277	rs6834634	G	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	160114541	.	AT	A	121.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr4	160162315	rs11944449	T	C	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr4	160225430	rs13103075	T	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:95,103:0.52:198
chr4	160244872	rs33969988	A	AT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=2.081;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr4	160251417	.	A	ATGTGTGTGTGTGTGTGTGTG	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.621;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr4	160260209	rs13127789	G	T	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:101,109:0.52:210
chr4	160271268	rs11320537	GT	G	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.931;QD=7.42;ReadPosRankSum=-1.362;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:47,52:0.53:99
chr4	160274180	rs10034898	G	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr4	160277276	rs1135004	C	T	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:124,117:0.49:241
chr4	162307060	rs17040984	G	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:158,135:0.46:293
chr4	162380521	rs140036351	T	TA	618.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,28:0.50:56
chr4	162459299	rs4691769	T	C	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr4	162841814	rs5863499	T	TA	3731.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:6,174:0.97:180
chr4	164048199	rs4691895	G	C	11406.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr4	164058512	rs62335064	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr4	164085425	rs4691896	T	C	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	164087954	rs936562	A	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr4	164415734	rs2276979	A	G	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:170,189:0.53:359
chr4	164435265	rs2304802	A	C	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.942;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.183;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:78,94:0.55:172
chr4	164438523	rs12643109	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr4	164438790	rs140868699	TACAA	T	388.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr4	164440581	rs1561736	T	C	4884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.428;QD=10.20;ReadPosRankSum=-0.340;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:238,241:0.50:479
chr4	164440743	rs4362779	T	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr4	164450255	rs372244193	A	AT	476.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr4	164466824	rs13130399	C	T	5120.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:311,259:0.45:570
chr4	164466970	rs11726828	C	T	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr4	164477252	rs33943246	A	AT	2147.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr4	164507104	rs7435076	G	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr4	164533316	rs907431	A	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	164533702	rs17657468	T	C	1926.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:83,83:0.50:166
chr4	164534405	rs2292420	C	A	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,81:0.55:148
chr4	164621883	rs9308064	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr4	165118066	rs35028495	G	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,18:0.26:68
chr4	165119006	rs35492692	A	AAT	492.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:55,17:0.24:72
chr4	166021811	rs6536890	G	C	874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-1.638;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:168,55:0.25:223
chr4	166159933	rs201033884	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.015;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=51.35;MQRankSum=-3.683;QD=1.93;ReadPosRankSum=0.859;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:113,25:0.18:138
chr4	166215662	rs374375227	CT	C	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.501;QD=1.38;ReadPosRankSum=-1.477;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr4	166307262	rs11100610	T	C	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr4	166307575	rs17624836	T	C	147.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.42;ReadPosRankSum=-0.549;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	166388825	.	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=0.538;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:135,28:0.17:163
chr4	166403574	rs2289230	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr4	166408782	rs3822062	T	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:84,34:0.29:118
chr4	166924727	rs143316816	A	G	5426.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:127,242:0.66:369
chr4	166928911	rs12649793	C	A	672.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr4	166929102	rs17590218	G	A	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:70,185:0.73:255
chr4	166929276	rs3775321	A	G	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr4	166978539	rs59089153	CT	C	2119.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	166981408	rs10651825	T	TA	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr4	167012241	rs377180243	GTTT	G,GTT	2679.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=67;set=Intersection	GT:AF:DP	1/2:0.23,0.77:66
chr4	167012250	rs33986267	T	TAA,A	2958.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;QD=41.09;SOR=2.649;set=HC	GT:AD:AF:DP	1/2:0,17,55:0.24,0.76:72
chr4	167012381	rs2654492	G	A	9027.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr4	167012480	rs2646914	T	C	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	167012506	rs2254420	A	G	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr4	167012543	rs2654493	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	167020778	rs34057891	C	CA	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=6.007;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=1.442;QD=8.84;ReadPosRankSum=1.048;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr4	167656278	rs12499704	A	C	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr4	167658622	rs34665704	A	G	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.996;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.843;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:357,123:0.26:480
chr4	167675635	rs2305593	G	A	3147.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:43,135:0.76:178
chr4	167932327	rs2558141	T	C	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:51,137:0.73:188
chr4	167932509	rs10517920	C	T	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:129,79:0.38:208
chr4	168004426	rs13117458	C	T	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:244,109:0.31:353
chr4	169138355	.	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=9.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-1.776;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr4	169279170	rs497151	A	G	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	169282112	rs2684346	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	169282232	rs2684347	G	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.29;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	169282355	rs2684348	T	C	2764.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr4	169292759	rs6829368	T	C	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr4	169294859	rs13133439	C	T	9658.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr4	169299528	rs13110927	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	169299676	rs10517990	T	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	169301059	rs1489232	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr4	169311790	rs34009039	G	GT	30.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	169312798	rs150634123	A	AG	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.125;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:117,33:0.22:150
chr4	169312801	rs6840397	A	G	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-1.006;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:59,85:0.59:144
chr4	169315571	rs11337868	TA	T	1610.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr4	169315760	rs3749499	C	A	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr4	169317081	rs1826028	C	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	169317279	rs3857035	C	T	191.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	169317284	.	T	TA	102	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=15;HapScore=4;MGOF=31;MMLQ=22;MQ=61.07;NF=0;NR=8;PP=102;QD=13.125;SC=TGCTACTATTTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=8;WE=169317292;WS=169317269;set=Platypus	GT:AD:AF:DP	1/1:1,8:0.89:9
chr4	169336662	rs4692661	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	169340639	rs1021318	C	A	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	169341435	rs2130145	A	G	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	169341608	rs141226900	TACACATACACACACACACAC	T	2976.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.37;QD=37.21;SOR=2.880;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	169362557	rs13151700	C	G	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr4	169369820	rs2712113	T	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	169369853	rs2712114	A	T	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr4	169369920	rs12507582	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	169374487	rs2634953	A	G	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr4	169382822	rs5863935	A	AC	1104.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	169391990	.	TA	T	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.313;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-1.375;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:99,28:0.22:127
chr4	169393179	rs12505232	T	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	169393595	rs13149639	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	169393972	rs113626526	G	GA	3578.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	169432673	rs61051061	C	T	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:46,15:0.25:61
chr4	169432841	rs1806729	G	A	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=1.235;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:116,37:0.24:153
chr4	169433326	rs7655494	TG	CA	2747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.499;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=1.149;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:189,76:0.29:265
chr4	169433333	rs7673220	C	T	2880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.005;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:192,85:0.31:277
chr4	169589214	rs2723705	T	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr4	169606779	rs146118374	G	A	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=5.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=0.459;SOR=1.063;set=HC	GT:AD:AF:DP	0/1:196,73:0.27:269
chr4	169612528	rs4260495	C	T	2066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=-1.277;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:47,97:0.67:144
chr4	169799448	rs62333013	A	G	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	169811959	rs189510294	A	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	169812313	rs6827082	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr4	169835048	rs1532651	C	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr4	169846255	rs3733656	T	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr4	169846359	rs66895777	GCT	G	4566.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	169847646	rs35375934	TA	T	381.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.467;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.452;QD=15.91;ReadPosRankSum=-0.391;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr4	169923363	rs60552620	CAAAA	C	961.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.06;ReadPosRankSum=1.335;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr4	169928842	rs2877380	G	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	169930210	rs34403282	CA	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.055;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.942;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr4	169931268	rs28371817	G	A	9515.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr4	169931274	rs2279038	G	A	9263.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr4	169931288	rs2279039	T	C	7715.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr4	169931326	rs67305871	CA	C	488	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.964;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.884;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:5,34:0.87:39
chr4	170037323	rs10017472	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	170037572	rs3811813	G	A	4161.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:78,182:0.70:260
chr4	170041864	rs147918956	T	TAAC	566.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr4	170077432	rs9312445	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	170077459	rs35455310	AT	A	534.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	170077540	rs10024401	A	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr4	170077789	rs10518039	A	G	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr4	170315496	rs4692721	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	170354836	rs7680152	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	170354873	rs13139925	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr4	170428334	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.128;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr4	170428352	rs11335570	G	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.153;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr4	170428901	rs33933790	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:71,30:0.30:101
chr4	170483153	rs62952760	T	A	127.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	170483483	rs34241464	TA	T	70.86	.	AC=1;AF=0.500;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr4	170501971	rs111989212	C	T	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=0.124;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:19,65:0.77:84
chr4	170581570	rs4692739	G	A	6068.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	170584703	rs34755939	C	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.318;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=1.097;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr4	170616918	rs2062609	G	A	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr4	170628524	rs9996636	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	170634408	rs1010713	A	G	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:42,96:0.70:138
chr4	170663235	rs1047642	C	T	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=0.445;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr4	170678993	rs11540095	T	C	7185.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr4	170987636	rs1480544	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:214,95:0.31:309
chr4	170991811	rs149355054	AGGTT	A	367.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr4	170994554	rs5864015	GT	G	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=7.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.449;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr4	170999860	rs2622068	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.275;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:49,22:0.31:71
chr4	172735897	rs3796654	C	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	172973421	rs1505494	G	A	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	172973423	rs10572855	CAG	C	1571.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	172973580	rs1505495	C	A	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	173232679	rs2136033	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr4	173232805	rs9312524	G	A	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:228,95:0.29:323
chr4	173232944	rs168011	G	T	2231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-1.136;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:52,116:0.69:168
chr4	173269638	rs333399	T	C	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:45,126:0.74:171
chr4	173269915	rs333398	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr4	173803914	rs6810619	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-1.049;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:75,31:0.29:106
chr4	173873170	rs11322401	TG	T	2330.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:8,120:0.94:128
chr4	173930479	rs4696042	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr4	174090004	rs3733477	G	A	3252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.098;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:88,161:0.65:249
chr4	174310777	rs4695833	A	T	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	174537063	rs4413383	G	A	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	175180946	rs17854001	G	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-2.529;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:110,30:0.21:140
chr4	175225386	rs201356224	C	CT	801.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=3.189;QD=8.02;ReadPosRankSum=-1.771;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:71,29:0.29:100
chr4	175225400	rs148050333	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.413;QD=2.43;ReadPosRankSum=0.574;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr4	175225452	rs4695918	G	A	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=26.30;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr4	175229796	rs149068385	G	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr4	175237208	rs4695922	C	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr4	175237408	rs1553669	T	C	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr4	175414246	rs2612694	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr4	175429213	rs3846298	C	T	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:49,80:0.62:129
chr4	175429370	rs5864277	GT	G	4748.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:57,146:0.72:203
chr4	175429808	rs3775977	G	A	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,45:0.70:64
chr4	175565245	rs4235212	T	C	2437.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:61,110:0.64:171
chr4	175565284	rs112221905	T	A	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=-1.832;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:74,35:0.32:109
chr4	175565291	rs55885329	C	T	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-2.435;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:65,30:0.32:95
chr4	175580119	rs6553802	T	C	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr4	175580191	rs4365704	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr4	175598334	rs6812439	T	C	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr4	175649861	rs1872548	T	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.91;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr4	175688138	rs7696263	A	G	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr4	175688274	.	TACACAC	T,TAC	1430.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=73;set=Intersection	GT:AF:DP	1/2:0.23,0.72:40
chr4	176733450	rs62338073	G	T	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.99;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	176733452	rs113129787	G	T	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.69;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	176892056	rs11366469	CT	C	1298.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr4	177049854	rs28698547	C	T	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=-0.479;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr4	177049880	rs28607147	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.779;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr4	177050057	rs78649239	G	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=0.792;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr4	177050062	rs71830098	CTATCAAATAAAA	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr4	177052925	rs7699831	G	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr4	177058580	rs9884643	A	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=-2.093;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr4	177063096	rs9995480	G	A	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr4	177073026	rs4690661	G	A	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr4	177081358	rs9683850	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:107,52:0.33:159
chr4	177082032	rs10520338	A	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:44,13:0.23:57
chr4	177082069	rs7693453	G	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:88,27:0.23:115
chr4	177083166	rs2877924	A	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	177087322	rs4388031	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr4	177093505	rs4538426	T	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,28:0.28:99
chr4	177095908	rs4690665	A	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.010;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:69,28:0.29:97
chr4	177098285	rs17625943	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.080;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:121,36:0.23:157
chr4	177100515	rs75391699	GT	G	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.699;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:52,18:0.26:70
chr4	177113764	rs6857056	A	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr4	177113779	rs12502935	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:21,74:0.78:95
chr4	177113836	rs6832177	C	T	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.455;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:110,42:0.28:152
chr4	177113956	rs2291244	A	G	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr4	177116463	rs994252	C	G	3338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=0.517;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:60,140:0.70:200
chr4	177116779	rs4565028	T	C	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr4	177142488	rs34466424	C	T	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.347;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:247,104:0.30:351
chr4	177142776	rs10032098	CA	AC	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	177142869	rs28415362	T	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr4	177143417	rs13147229	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr4	177143664	rs6553937	C	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr4	177146627	rs10013975	T	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr4	177243229	rs35890542	A	G	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=0.866;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:16,29:0.64:45
chr4	177245488	rs35827677	T	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.22;ReadPosRankSum=-0.921;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr4	177249533	rs2278903	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.974;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr4	177605081	rs5864401	CTCA	C	11374.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr4	177608775	rs4604006	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr4	177608875	rs4529000	A	C	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	177609203	rs13136065	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr4	177609259	rs2877962	C	T	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.47;ReadPosRankSum=1.546;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr4	177609264	rs2333495	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=1.546;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr4	177713288	rs115464473	G	A	10768.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:178,499:0.74:677
chr4	178167074	rs2118922	G	A	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr4	178167282	rs1347894	G	A	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr4	178169500	rs3828517	G	A	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr4	178262613	rs201755762	G	GT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.022;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr4	178272748	rs1054753	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr4	178274565	rs2048074	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,73:0.69:106
chr4	178274694	rs10007075	T	G	4872.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:89,221:0.71:310
chr4	178274750	rs13112358	C	T	4430.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:109,206:0.65:315
chr4	178274835	rs13112390	A	C	2375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-1.251;QD=13.27;ReadPosRankSum=0.909;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:69,110:0.61:179
chr4	178281754	rs1876268	G	A	7243.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr4	178352679	rs1061814	T	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr4	178352880	rs113407270	T	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:59,111:0.65:170
chr4	178353046	rs3805167	G	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	178355668	rs4690521	C	G	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr4	178357566	rs71599314	A	ATAATTG	535.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr4	178359960	rs2228119	G	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	178361414	rs34241758	A	C	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:140,78:0.36:218
chr4	178363378	rs11131799	G	A	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr4	178363496	rs74626221	C	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:248,112:0.31:360
chr4	178881982	rs13109967	G	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	178882120	rs9994032	A	T	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	178887795	rs113648256	T	TTTTC	2395.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:3,57:0.95:60
chr4	183090279	rs34704654	C	A	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr4	183267728	rs33933747	TA	T	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.005;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr4	183268148	rs11373586	C	CG,CGG	626.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;set=Intersection	GT:AF:DP	1/2:0.39,0.52:23
chr4	183268174	rs6552554	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr4	183271186	rs10644033	G	GAA	668.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	183370056	rs11721730	C	T	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr4	183370244	rs35591339	AGCG	A	6561.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,148:0.99:149
chr4	183522050	.	CTT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=1.440;QD=9.42;ReadPosRankSum=0.206;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr4	183522409	rs149533994	TTTG	T	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.008;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.907;QD=21.63;ReadPosRankSum=1.203;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr4	183601590	rs34738241	A	AG	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=13.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=0.469;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr4	183601595	rs111914645	G	GT	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=16.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.719;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr4	183635468	rs10560633	CAAA	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.27;ReadPosRankSum=-0.524;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr4	183650026	rs5864796	GA	G	696.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr4	183652175	rs10866256	T	C	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr4	183659722	rs74988363	G	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,65:0.32:206
chr4	183664593	rs7676674	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:184,73:0.28:257
chr4	183665437	rs6835335	C	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-1.407;SOR=1.586;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr4	183673226	rs5864797	T	TA	105.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.671;QD=8.79;ReadPosRankSum=-1.643;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr4	183673247	rs2309770	T	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	183674577	rs13130747	G	C	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:27,65:0.71:92
chr4	183674697	rs17263582	C	T	2114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-1.259;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:438,147:0.25:585
chr4	183714507	rs184165622	C	T	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:93,215:0.70:308
chr4	183814169	rs2070805	A	G	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.360;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:92,59:0.39:151
chr4	183815561	rs17331744	T	C	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr4	183815688	rs4742	A	G	10918.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr4	184170025	rs907357	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.310;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	184171187	rs10020261	T	C	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:85,178:0.68:263
chr4	184190355	rs11407064	A	AC	6470.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr4	184190535	rs6858486	G	A	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr4	184192183	rs28647357	T	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.099;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr4	184192278	rs11734376	G	T	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.411;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:104,28:0.21:132
chr4	184201909	rs11132173	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr4	184202148	rs11132174	G	T	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr4	184203706	rs2871353	A	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr4	184203886	rs3814422	G	C	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=-1.485;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:147,65:0.31:212
chr4	184204099	rs3814421	C	T	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-0.344;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:71,39:0.35:110
chr4	184242959	rs6839940	C	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:50,77:0.61:127
chr4	184243528	rs7688467	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr4	184366629	rs11282266	T	TGCACA	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr4	184367558	rs147291711	TCTG	T	8144.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr4	184426387	rs8872	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:85,38:0.31:123
chr4	184426526	rs6552675	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr4	184427537	rs55915636	G	A	6808.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:122,302:0.71:424
chr4	184427580	rs62358469	A	G	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:225,95:0.30:320
chr4	184570723	rs58975219	TA	T	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr4	184570891	rs6552694	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr4	184577177	rs6838230	T	C	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-1.435;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr4	184577270	rs73002733	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr4	184579914	rs9790628	G	C	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr4	184605124	rs200618360	G	A	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-1.252;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:63,105:0.62:168
chr4	184605697	rs111369348	T	C	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr4	184619017	rs12651215	C	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr4	184629778	.	C	G	514.77	.	AC=1;AF=0.500;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr4	184629794	rs9312318	G	A	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,40:0.66:61
chr4	184922669	rs3749534	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr4	184931818	rs4861597	G	A	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:67,163:0.71:230
chr4	184932609	rs4862282	G	A	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr4	185038274	rs4642291	G	A	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr4	185074686	rs13147555	A	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chr4	185075033	rs35344477	A	AT	128.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr4	185310218	rs1131553	C	T	4976.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr4	185312027	rs66641943	C	T	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr4	185339517	rs2288246	C	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr4	185340725	.	G	GAA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.415;QD=2.06;ReadPosRankSum=0.141;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr4	185550764	rs4647693	T	C	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.56;ReadPosRankSum=-0.156;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr4	185550779	rs10660141	T	TA	72.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=10.32;ReadPosRankSum=-0.000;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr4	185559487	rs2705901	G	C	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=2.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-0.712;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:220,91:0.29:311
chr4	185578229	rs13108061	G	T	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr4	185583092	rs60624489	C	CTATT	5544.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr4	185587165	rs2463447	A	G	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	185612627	.	CT	C	58	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.6471;HP=15;HapScore=3;MGOF=10;MMLQ=24;MQ=60.0;NF=4;NR=1;PP=58;QD=12.2;SC=GGTATTAATACTTTTTTTTTT;SbPval=0.66;Source=Platypus;TC=5;TCF=4;TCR=1;TR=5;WE=185612637;WS=185612617;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr4	185612778	.	A	G	262.77	.	AC=1;AF=0.500;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr4	185622046	rs11728389	C	T	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr4	185652147	rs3806796	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr4	185652201	rs7675046	G	A	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.83;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	185652224	rs11362720	AC	A	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.406;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr4	185655240	.	G	C	1819.77	.	AC=1;AF=0.500;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	0/1:160,96:0.38:256
chr4	185681475	rs6825554	G	C	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr4	185683840	rs939040	A	G	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr4	185686032	rs2292898	C	T	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:64,146:0.70:210
chr4	185686856	rs3792314	C	G	1734.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:21,65:0.76:86
chr4	185686948	.	AAC	A	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.335;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=0.493;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:371,54:0.13:425
chr4	185694877	.	TA	T	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.265;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:101,31:0.23:132
chr4	185701549	rs1803898	G	T	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.372;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:152,71:0.32:223
chr4	185701620	rs7680850	T	C	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.817;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:88,24:0.21:112
chr4	185735054	rs7676928	G	A	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	185736113	rs2280297	G	C	8763.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr4	185772384	rs1032299	A	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr4	185859505	rs6821859	T	G	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr4	185940461	rs4862491	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr4	185941964	rs6841359	G	A	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:103,186:0.64:289
chr4	185999348	rs10023344	T	C	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr4	185999543	rs6841061	G	A	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr4	185999587	rs6818170	T	A	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr4	186065844	rs34795113	C	CT	287.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr4	186084196	rs5864930	G	GA	368.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr4	186085427	rs34135937	C	CT	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.156;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr4	186091487	rs6820332	G	A	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-2.136;SOR=1.046;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr4	186097045	rs6855305	C	T	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.070;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:282,106:0.27:388
chr4	186097219	rs370181930	C	CA	350.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.754;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr4	186111639	rs1133657	T	C	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:52,169:0.76:221
chr4	186112111	rs3108237	G	A	3000.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:55,125:0.69:180
chr4	186112369	rs34825796	G	GA	776.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr4	186168387	rs3108252	T	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.09;ReadPosRankSum=0.497;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr4	186170358	rs3108229	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr4	186188373	rs57930723	TA	T	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.233;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr4	186208975	rs34265529	A	AG	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	186209273	rs11725533	A	G	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-0.160;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:99,32:0.24:131
chr4	186274541	rs11724024	G	A	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr4	186288457	rs201722354	CT	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=1.233;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:51,28:0.35:79
chr4	186294198	rs3797026	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:108,49:0.31:157
chr4	186299260	rs2030802	A	G	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:74,35:0.32:109
chr4	186299519	rs1288549	A	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.693;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.708;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr4	186320666	rs11287696	TA	T	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr4	186321067	rs1053218	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	186321447	rs3733646	C	G	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr4	186323209	rs3733645	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr4	186323593	rs6552880	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr4	186324841	rs13126680	T	A	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr4	186329007	rs114306411	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr4	186336583	rs10032989	G	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr4	186339584	rs10003160	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr4	186347055	rs2289720	G	A	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr4	186347073	rs11132303	G	C	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr4	186347092	rs10866275	T	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr4	186350559	rs6856909	C	T	5935.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:105,274:0.72:379
chr4	186357523	rs7697970	C	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	186361876	rs4476640	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr4	186361924	.	G	GGCCGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGA	837.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	186361927	.	T	A	107.28	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr4	186366315	rs2120414	T	C	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr4	186366809	rs6833872	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr4	186370676	rs35349112	T	TA	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr4	186379371	rs7687202	G	A	3374.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr4	186379735	rs6827370	T	C	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:33,86:0.72:119
chr4	186393233	.	G	GT	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.958;QD=1.17;ReadPosRankSum=1.930;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:174,42:0.19:216
chr4	186423637	rs4635850	G	A	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr4	186423655	rs12644280	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr4	186423677	rs10866276	G	A	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr4	186423734	rs34016200	TCA	T	127.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,6:0.18:33
chr4	186427841	rs2306705	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr4	186444698	rs4862543	A	C	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr4	186444704	rs4861669	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.15;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr4	186456617	rs4862545	A	G	5396.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr4	186508805	rs61744509	G	T	2043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=6.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=0.064;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:53,94:0.64:147
chr4	186528433	rs13144963	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr4	186541301	rs61753946	A	G	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:54,108:0.67:162
chr4	186544879	rs61910743	G	C	5975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=1.531;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:108,274:0.72:382
chr4	186568566	rs60210360	C	CT	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.936;QD=4.32;ReadPosRankSum=-0.462;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr4	186569283	rs57907928	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.759;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr4	186570855	rs7663827	C	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-1.665;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:66,41:0.38:107
chr4	186572791	rs4862557	C	T	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr4	186577592	rs35071718	G	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.835;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.855;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr4	186611819	rs79427853	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr4	186997643	rs1568358	C	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr4	186997767	rs3775296	C	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-2.012;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:190,44:0.19:234
chr4	186998271	rs75678105	A	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr4	187003378	.	CAAAAAAAAAA	C	781.73	.	AC=1;AF=0.500;AN=2;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=15.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.07;SOR=3.590;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr4	187004217	rs3775290	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:219,95:0.30:314
chr4	187005376	rs6830345	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.60;QD=33.14;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr4	187005865	rs73873710	C	T	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:34,87:0.72:121
chr4	187072932	rs2276914	A	G	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr4	187073000	rs2276913	A	G	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr4	187073030	rs2276912	T	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr4	187074833	rs4862650	A	G	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr4	187075474	rs6552958	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr4	187077206	rs4862653	A	G	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr4	187077393	rs7670550	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.542;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr4	187077437	rs13114283	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=-0.662;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr4	187078785	rs2276924	A	G	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr4	187078819	rs2276923	C	G	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:51,142:0.74:193
chr4	187078922	rs2276921	G	C	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.004;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=4.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=1.148;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:41,6:0.13:47
chr4	187079017	rs1877321	G	A	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:34,70:0.67:104
chr4	187079047	rs2276919	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:123,52:0.30:175
chr4	187079183	rs12504044	G	A	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:257,130:0.34:387
chr4	187083964	.	C	CT	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.622;QD=4.41;ReadPosRankSum=0.835;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:43,24:0.36:67
chr4	187086150	rs73027974	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr4	187086562	rs61155675	C	A	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.180;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:276,97:0.26:373
chr4	187088248	rs9991339	C	T	2440.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:31,106:0.77:137
chr4	187092960	rs7694300	A	G	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr4	187093018	rs4241814	G	T	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,78:0.74:105
chr4	187093215	rs76303699	A	G	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.351;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=6.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=-0.775;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:168,58:0.26:226
chr4	187120211	rs13146272	C	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-2.958;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:123,53:0.30:176
chr4	187122204	rs11730880	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr4	187122319	rs3736455	T	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:112,44:0.28:156
chr4	187122355	rs3736456	T	C	3180.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:59,141:0.70:200
chr4	187126550	rs3216724	TC	T	783.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.478;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.407;QD=4.96;ReadPosRankSum=0.114;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr4	187129995	rs2276917	A	G	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.020;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:129,47:0.27:176
chr4	187149233	rs4253241	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chr4	187149540	rs1912826	G	A	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:14,65:0.82:79
chr4	187158034	rs3733402	G	A	4761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.749;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:110,223:0.67:333
chr4	187159282	rs4253256	G	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr4	187171355	rs4253299	A	G	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr4	187173012	rs4253301	T	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:168,71:0.30:239
chr4	187178473	rs4253325	G	A	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.117;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=-1.806;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:35,54:0.61:89
chr4	187178599	rs4253326	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr4	187179210	rs925453	T	C	2770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=1.156;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:60,129:0.68:189
chr4	187201211	rs5974	A	G	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:120,50:0.29:170
chr4	187205301	rs5970	T	C	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:102,39:0.28:141
chr4	187511861	rs1973352	G	A	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr4	187513623	rs3836618	TA	T	1085.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr4	187516880	rs1298865	A	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr4	187518976	rs2306990	C	T	16221.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.182;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr4	187518980	rs1280096	T	C	15875.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.49;SOR=1.235;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr4	187519206	rs1280097	C	G	7195.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr4	187521037	rs10009030	C	A	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr4	187525020	rs2637777	A	C	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr4	187530313	rs4862722	C	T	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr4	187584771	rs172903	C	G	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr4	187627792	rs11939575	T	C	6206.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:143,285:0.67:428
chr4	187628398	rs1877731	C	G	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:64,156:0.71:220
chr4	187629140	rs367863	G	C	6188.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:99,275:0.74:374
chr4	187629497	rs458021	G	A	3766.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:75,166:0.69:241
chr4	187629538	rs3733413	C	T	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:77,154:0.67:231
chr4	187629770	rs3733414	A	C	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:83,168:0.67:251
chr4	189012680	rs17881718	G	A	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:162,75:0.32:237
chr4	189012728	rs2279550	G	C	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:235,107:0.31:342
chr4	189026573	rs17884102	A	G	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr4	189060610	rs11934889	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.63;ReadPosRankSum=-1.469;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr4	189061024	rs73023226	G	A	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:45,147:0.77:192
chr4	189061036	rs76826594	C	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-1.135;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:146,43:0.23:189
chr4	189061169	rs56361162	C	T	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.043;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr4	189061604	rs56412251	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr4	189061675	rs113738610	A	AT	563.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.676;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.732;QD=4.62;ReadPosRankSum=1.553;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:91,31:0.25:122
chr4	189061855	rs11316189	GA	G,GAA	452.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	1/1:0.81:27
chr4	189063361	.	C	CGTGTGTGT	817.73	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;QD=37.17;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:4,18:0.82:22
chr4	189064828	rs9784562	T	C	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr4	189065104	rs9784566	T	G	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr4	189065441	rs11940227	G	T	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr4	189660773	rs199677712	C	A	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr4	190329166	rs10622647	G	GCACACACA,GCGCACACACACA	1734.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=71;set=Intersection	GT:AF:DP	1/1:0.98:45
chr4	190394938	rs138612273	CAAGAAG	C,CAAG	2262.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/2:0.71,0.29:55
chr4	190395259	rs13143685	C	G	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:81,141:0.64:222
chr4	190395838	rs70944383	C	CA	1342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.027;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.854;QD=10.02;ReadPosRankSum=1.110;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:52,82:0.61:134
chr4	190876177	rs80264746	G	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.897;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=63.196;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-18.045;QD=3.39;ReadPosRankSum=-5.261;SOR=4.026;set=HC	GT:AD:AF:DP	0/1:283,46:0.14:329
chr4	190876186	.	G	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=-12.258;QD=0.81;ReadPosRankSum=-5.277;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:357,40:0.10:397
chr4	190876192	rs200322789	A	C	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.062;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=14.311;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-11.946;QD=0.65;ReadPosRankSum=-2.887;SOR=2.391;set=HC	GT:AD:AF:DP	0/1:383,35:0.08:418
chr4	190876195	rs7684300	C	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.996;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=16.143;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-14.266;QD=2.27;ReadPosRankSum=-4.081;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:387,54:0.12:441
chr4	190876204	rs3207892	G	A	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.870;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=16.428;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-19.871;QD=2.91;ReadPosRankSum=-4.499;SOR=1.990;set=HC	GT:AD:AF:DP	0/1:380,70:0.16:450
chr4	190876242	rs1061653	G	A	4305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.579;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=54.81;MQRankSum=-18.125;QD=9.46;ReadPosRankSum=1.720;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:297,158:0.35:455
chr4	190876256	rs140599307	C	T	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=-9.935;QD=4.47;ReadPosRankSum=1.753;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:361,83:0.19:444
chr4	190876278	rs199978807	G	A	2038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.978;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=53.86;MQRankSum=-8.311;QD=5.45;ReadPosRankSum=0.653;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:298,76:0.20:374
chr4	190876293	rs201142987	C	A	2142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=-7.483;QD=6.27;ReadPosRankSum=1.115;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:271,71:0.21:342
chr4	190876314	.	C	T	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=4.924;MLEAC=1;MLEAF=0.500;MQ=53.15;MQRankSum=-4.842;QD=3.17;ReadPosRankSum=-1.086;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:207,46:0.18:253
chr4	190876319	rs77450681	A	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:150,86:0.36:236
chr4	190876349	rs199599460	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,26:0.28:94
chr4	190878452	rs372664630	T	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.615;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=14.238;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-8.606;QD=2.02;ReadPosRankSum=0.505;SOR=3.451;set=HC	GT:AD:AF:DP	0/1:102,14:0.12:116
chr4	190878453	.	G	A	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=16.987;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-8.770;QD=1.96;ReadPosRankSum=0.769;SOR=3.624;set=HC	GT:AD:AF:DP	0/1:106,14:0.12:120
chr4	190878463	rs62345288	T	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.993;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=30.051;MLEAC=1;MLEAF=0.500;MQ=57.45;MQRankSum=-11.487;QD=2.74;ReadPosRankSum=2.654;SOR=4.662;set=HC	GT:AD:AF:DP	0/1:125,19:0.13:144
chr4	190878485	rs62345289	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.528;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=36.471;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-14.168;QD=0.84;ReadPosRankSum=5.240;SOR=5.077;set=HC	GT:AD:AF:DP	0/1:197,19:0.09:216
chr4	190878506	rs12643923	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.518;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=39.055;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-12.847;QD=0.12;ReadPosRankSum=4.957;SOR=5.166;set=HC	GT:AD:AF:DP	0/1:247,19:0.07:266
chr4	190878538	rs34697501	A	AT	1014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.430;ClippingRankSum=0.000;DB;DP=400;ExcessHet=3.0103;FS=72.739;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-14.019;QD=2.56;ReadPosRankSum=-8.607;SOR=3.923;set=HC	GT:AD:AF:DP	0/1:332,64:0.16:396
chr4	190878551	.	AG	A	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DP=570;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=54.44;MQRankSum=-6.095;QD=0.09;ReadPosRankSum=-4.199;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:517,47:0.08:564
chr4	190878563	rs137858630	C	A	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=693;ExcessHet=3.0103;FS=7.841;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-7.978;QD=2.82;ReadPosRankSum=-5.712;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:521,147:0.22:668
chr4	190878569	.	T	C	995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DP=738;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-7.985;QD=1.35;ReadPosRankSum=-2.634;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:661,75:0.10:736
chr4	190878571	.	G	A	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0.000;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=-8.240;QD=1.30;ReadPosRankSum=-1.736;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:680,75:0.10:755
chr4	190878596	.	G	A	2968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.643;ClippingRankSum=0.000;DP=1016;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-8.183;QD=2.92;ReadPosRankSum=-0.415;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:880,135:0.13:1015
chr4	190878597	rs62345290	C	T	1811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=1027;ExcessHet=3.0103;FS=3.355;MLEAC=1;MLEAF=0.500;MQ=54.33;MQRankSum=-3.367;QD=1.78;ReadPosRankSum=-0.533;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:829,191:0.19:1020
chr4	190878599	.	A	G	2972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.853;ClippingRankSum=0.000;DP=1033;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.35;MQRankSum=-8.014;QD=2.88;ReadPosRankSum=0.276;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:895,137:0.13:1032
chr4	190878608	.	G	A	3103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.035;ClippingRankSum=0.000;DP=1119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=-8.242;QD=2.78;ReadPosRankSum=1.347;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:965,153:0.14:1118
chr4	190878654	rs78653319	C	G	7704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.648;ClippingRankSum=0.000;DB;DP=1228;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=-5.888;QD=6.28;ReadPosRankSum=2.175;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:765,462:0.38:1227
chr4	190878661	rs62345291	A	T	2833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=1209;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=53.77;MQRankSum=-3.195;QD=2.36;ReadPosRankSum=1.448;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:947,256:0.21:1203
chr4	190878729	rs201450141	A	G	3703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.522;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=73.959;MLEAC=1;MLEAF=0.500;MQ=54.51;MQRankSum=-16.254;QD=12.60;ReadPosRankSum=-5.793;SOR=3.516;set=HC	GT:AD:AF:DP	0/1:183,111:0.38:294
chr4	190878731	rs201154783	GG	CA	3703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.293;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=90.026;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-15.790;QD=13.92;ReadPosRankSum=-2.535;SOR=4.927;set=HC	GT:AD:AF:DP	0/1:181,85:0.32:266
chr4	190878750	rs113800771	A	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.079;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=42.516;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-11.490;QD=5.11;ReadPosRankSum=3.405;SOR=5.356;set=HC	GT:AD:AF:DP	0/1:128,40:0.24:168
chr4	190882973	rs78181874	A	G	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-11.320;QD=0.95;ReadPosRankSum=4.821;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:126,17:0.12:143
chr4	190947451	rs140385360	C	T	9107.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:429,440:0.51:869
chr5	163205	rs3810870	G	C	15036.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr5	163260	rs29674	A	C	15115.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.02;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr5	163260	.	ACCCTGC	CCCCTGC,CCCCTGG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=11;MMLQ=28;MQ=60.0;NF=250,64;NR=192,47;PP=2962,1169;QD=20;SC=GGACGGGGAGACCCTGCGCCC;SbPval=0.5;Source=Platypus;TC=444;TCF=251;TCR=193;TR=442,111;WE=163274;WS=163250;set=Platypus	GT:AF:DP	0/1:1.00:444
chr5	163266	rs3810867	C	G	2034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.139;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:329,123:0.27:452
chr5	163769	rs29675	G	A	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	169361	rs13159868	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	169763	rs1108868	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	171569	rs4956981	T	C	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	171643	rs13171103	C	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	172971	rs6868964	G	A	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	173200	rs6885136	C	T	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	173258	rs6893369	A	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	174106	rs4956987	G	A	6693.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	174240	rs6875054	GC	AA	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.68;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	174267	rs6862729	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.75;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	181660	rs7717970	T	G	5253.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=3.407;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=0.691;SOR=0.528;set=HC	GT:AD:AF:DP	1/1:1,205:1.00:206
chr5	181730	rs12519352	C	G	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	181762	rs11133847	A	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	181964	.	G	A	521.77	.	AC=1;AF=0.500;AN=2;DP=99;set=Intersection	GT:AD:AF:DP	0/1:71,28:0.28:99
chr5	182077	rs4956924	T	A	17957.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr5	195507	rs13167067	C	T	9691.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	218598	rs2303740	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	225768	rs12520059	G	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	230980	rs2288461	A	G	10380.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr5	231111	rs1126417	T	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr5	256434	rs372662724	ACT	A	1453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-26.352;QD=2.08;ReadPosRankSum=-5.558;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:617,82:0.12:699
chr5	256472	rs6961	G	A	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.578;ClippingRankSum=0.000;DB;DP=808;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-27.869;QD=0.23;ReadPosRankSum=6.693;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:704,103:0.13:807
chr5	256514	rs1042446	G	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.130;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-23.332;QD=0.85;ReadPosRankSum=-3.343;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:490,91:0.16:581
chr5	256548	rs1042476	TG	CA	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.194;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=16.640;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-17.813;QD=0.51;ReadPosRankSum=-2.474;SOR=2.196;set=HC	GT:AD:AF:DP	0/1:322,28:0.08:350
chr5	311478	rs2244029	T	C	23013.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,896:1.00:896
chr5	314011	rs4957018	G	A	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=24.99;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	344218	rs6887387	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=-0.153;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr5	354051	rs2013782	T	C	5964.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	413428	rs3215229	AT	A	1798.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:49,114:0.70:163
chr5	413591	rs11744075	G	A	9186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.80;ReadPosRankSum=0.998;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:90,229:0.72:319
chr5	413594	rs2261659	G	C	9087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.32;ReadPosRankSum=0.819;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:87,223:0.72:310
chr5	413639	rs2672731	G	C	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chr5	421403	rs11741946	G	A	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:52,153:0.75:205
chr5	421455	rs11741954	G	T	4413.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:84,197:0.70:281
chr5	421647	rs10068732	A	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr5	422752	rs10072668	T	C	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:46,142:0.76:188
chr5	422955	rs2292596	C	G	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=5.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=-0.863;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:187,70:0.27:257
chr5	423906	rs55932239	G	A	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:40,116:0.74:156
chr5	428166	rs143087196	GC	G	2974.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:43,108:0.72:151
chr5	433952	rs2672724	C	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr5	434722	rs34453673	G	C	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:68,208:0.75:276
chr5	434981	rs2672725	G	C	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	435001	rs1058336	C	T	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:20,78:0.80:98
chr5	435021	rs1058337	T	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr5	435055	rs2672779	G	T	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr5	442571	rs56146525	A	C	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:23,72:0.76:95
chr5	443059	rs77101200	G	T	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:13,44:0.77:57
chr5	453567	rs2672722	G	A	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-0.190;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:324,104:0.24:428
chr5	456915	rs2721010	A	G	859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=5.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.716;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:236,67:0.22:303
chr5	457955	rs2251843	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.252;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:79,36:0.31:115
chr5	462465	rs890972	C	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:135,56:0.29:191
chr5	462556	rs2081942	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr5	465510	rs1035908	T	C	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	466075	rs10474780	G	C	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	466811	rs2434697	T	C	7760.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	472951	rs890974	T	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:126,50:0.28:176
chr5	473368	rs34674918	G	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.915;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr5	473580	rs10474783	C	T	537.22	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:3,24:0.89:27
chr5	474945	.	AG	A	238	.	AC=1;AF=0.500;AN=2;BRF=0.03;FR=0.5000;HP=5;HapScore=2;MGOF=7;MMLQ=25;MQ=59.51;NF=6;NR=2;PP=238;QD=33.5;SC=GGAGACCTGGAGGGAGAGGAG;SbPval=0.46;Source=Platypus;TC=21;TCF=17;TCR=4;TR=8;WE=474953;WS=474935;set=Platypus	GT:AD:AF:DP	1/0:13,8:0.38:21
chr5	474974	rs2721018	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.483;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr5	475104	rs2247114	A	G	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	475337	rs200907923	TGGAAAGTTAGGGTCACCG	T	1718.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr5	475346	rs2247107	A	T	307.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chr5	475621	rs55720119	T	TG	1465.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,34:0.79:43
chr5	475626	rs41282625	C	G	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr5	476353	rs2230437	C	T	11529.77	.	AC=1;AF=0.500;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	0/1:219,505:0.70:724
chr5	476530	rs2244240	C	G	5542.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	476848	rs890976	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:90,52:0.37:142
chr5	476910	rs890977	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	477303	rs890980	A	G	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.358;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:87,30:0.26:117
chr5	477634	rs4334924	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr5	477639	rs890981	G	A	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:24,7:0.23:31
chr5	478574	rs3832380	GGGGGCGCA	G	457.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	478598	rs3734140	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr5	478655	rs3734141	G	A	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	479879	rs376525752	G	GC	2436.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	479905	rs890986	A	C	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	481610	rs6872510	T	C	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	482151	rs11385633	G	GC	676.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=17.81;ReadPosRankSum=0.866;SOR=3.145;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chr5	482186	rs9885312	C	G	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	482653	rs3777230	T	C	4700.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	488310	rs2303737	C	T	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr5	491826	rs11746373	G	C	5703.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	619022	rs1617985	C	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	619333	rs1709531	T	C	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	624781	rs78856498	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:131,66:0.34:197
chr5	639231	rs12522955	C	A	8283.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	640404	rs141837757	CCCTA	C	2111.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	640728	rs56325086	G	A	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	644552	rs4957080	G	T	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	665148	rs72707016	A	G	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	665280	rs1697963	T	C	26290.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr5	665295	rs61731455	A	G	26855.77	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr5	666244	rs149807312	G	GGGGCACAGGCGACTTA	18985.73	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:2,423:1.00:425
chr5	666270	rs11750269	G	A	9203.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr5	666323	rs1697964	A	G	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	678062	rs450628	A	G	11585.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr5	733767	rs55778145	T	C	1626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=8.109;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-6.876;QD=4.43;ReadPosRankSum=0.078;SOR=1.137;set=HC	GT:AD:AF:DP	0/1:274,93:0.25:367
chr5	733998	rs4247710	G	A	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-5.356;QD=6.94;ReadPosRankSum=1.216;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:156,45:0.22:201
chr5	734004	rs28498541	G	A	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.106;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.839;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-5.371;QD=7.76;ReadPosRankSum=-0.723;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:135,44:0.25:179
chr5	741736	rs61128505	G	T	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.521;MLEAC=1;MLEAF=0.500;MQ=47.33;MQRankSum=-3.128;QD=16.40;ReadPosRankSum=3.039;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:17,43:0.72:60
chr5	745306	rs172870	A	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.031;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=46.424;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-13.696;QD=2.86;ReadPosRankSum=-5.381;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:168,41:0.20:209
chr5	745371	rs62332112	C	G	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:180,189:0.51:369
chr5	756307	rs367198	T	C	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr5	766910	rs1809933	C	T	8533.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:151,377:0.71:528
chr5	766939	rs4957103	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:313,143:0.31:456
chr5	767033	rs1809932	A	C	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:123,242:0.66:365
chr5	796006	.	TGG	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=4;HapScore=1;MGOF=43;MMLQ=28;MQ=58.93;NF=285;NR=741;PP=2962;QD=20;SC=CCCAGTACTGTGGGCTCCCAT;SbPval=0.12;Source=Platypus;TC=1368;TCF=302;TCR=1066;TR=1026;WE=796015;WS=795996;set=Platypus	GT:AD:AF:DP	1/0:342,1026:0.75:1368
chr5	796047	rs33929417	CTG	C	32716.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DB;DP=2413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;MQRankSum=-0.785;QD=25.22;ReadPosRankSum=-0.501;SOR=0.480;set=HC	GT:AD:AF:DP	1/1:12,1285:0.99:1297
chr5	796053	.	GCT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=1;MGOF=16;MMLQ=28;MQ=58.58;NF=267;NR=1009;PP=2966;QD=20;SC=AGTACTGTGTGCTCCCATTTC;SbPval=0.52;Source=Platypus;TC=1307;TCF=276;TCR=1031;TR=1276;WE=796072;WS=796031;set=Platypus	GT:AD:AF:DP	0/1:31,1276:0.98:1307
chr5	796064	.	T	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=24;MQ=58.87;NF=586;NR=520;PP=2962;QD=20;SC=CTCCCATTTCTCAGTACTGTA;SbPval=0.65;Source=Platypus;TC=2198;TCF=1115;TCR=1083;TR=1106;WE=796072;WS=796031;set=Platypus	GT:AD:AF:DP	0/1:1092,1106:0.50:2198
chr5	796064	rs144616948	T	TCAGTACTGTATGCCCATTTCC	31622.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=2290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;MQRankSum=-0.467;QD=30.91;ReadPosRankSum=1.316;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:6,1017:0.99:1023
chr5	801362	rs3867415	A	G	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	834075	rs1260864	G	A	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	837553	.	C	G	1796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.769;ClippingRankSum=0.000;DP=644;ExcessHet=3.0103;FS=6.865;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-18.723;QD=2.79;ReadPosRankSum=-3.511;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:557,86:0.13:643
chr5	837556	rs28449575	T	G	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=8.765;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-18.924;QD=2.79;ReadPosRankSum=-3.936;SOR=1.604;set=HC	GT:AD:AF:DP	0/1:559,82:0.13:641
chr5	840342	rs3822811	A	G	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	0/1:484,317:0.40:801
chr5	840506	rs7701283	C	T	3023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.229;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.40;MQRankSum=-16.202;QD=5.17;ReadPosRankSum=-0.938;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:424,161:0.28:585
chr5	878525	rs508016	T	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.185;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=6.507;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-24.147;QD=0.70;ReadPosRankSum=8.138;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:626,110:0.15:736
chr5	881077	.	C	T	2520.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:39,113:0.74:152
chr5	893356	rs13181961	C	G	10784.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:178,487:0.73:665
chr5	904374	rs12518024	T	G	6833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=2.050;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.294;QD=16.51;ReadPosRankSum=-0.796;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:107,307:0.74:414
chr5	904395	.	G	GT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.060;QD=0.93;ReadPosRankSum=-0.241;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:155,39:0.20:194
chr5	1009223	.	A	AGGGCGGGC	265.73	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr5	1009425	rs10060716	A	G	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	1034246	rs4975576	A	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	1035399	rs147352169	T	TAATG	7449.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	1035482	rs12657514	A	G	11894.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr5	1036616	rs367843383	CA	C	1169.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=32.49;SOR=7.223;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	1036900	rs34309815	C	T	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	1036962	rs34413936	C	A	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	1038526	rs3889678	A	G	18006.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:2,714:1.00:716
chr5	1052360	rs3810854	C	T	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	1052390	rs114414556	G	A	4411.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	1052735	rs4046186	GGAGCA	G	1469.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	1057615	rs2241606	A	G	14302.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr5	1057782	rs12108965	T	C	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	1060400	rs4975568	G	A	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	1060634	rs4246750	C	T	8557.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr5	1060654	rs4246749	G	A	6497.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	1060685	rs2241608	G	A	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	1063187	rs6863419	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	1065290	rs4362981	A	G	10952.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	1065298	rs55643147	GAGGGGACACTGAGGAGACACAC	G	10953.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr5	1065399	rs737154	C	T	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr5	1065683	rs56078134	A	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	1065689	rs13186367	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	1073689	rs10780095	C	T	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	1074560	rs12523242	A	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	1074818	rs41280366	C	T	8012.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	1074921	rs7714914	G	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	1076459	rs11952124	G	T	8829.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr5	1076519	.	TCAGGTTCCAGC	T	737	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=6;HapScore=1;MGOF=16;MMLQ=28;MQ=59.28;NF=0;NR=52;PP=737;QD=14.6730769231;SC=TCAGGCCCCCTCAGGTTCCAG;SbPval=1.0;Source=Platypus;TC=55;TCF=0;TCR=55;TR=52;WE=1076537;WS=1076509;set=Platypus	GT:AD:AF:DP	1/0:3,52:0.95:55
chr5	1076521	.	A	ATCCTGTGACCACCT	4188.73	.	AC=2;AF=1.00;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	1076524	.	T	TCCA	3157.73	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.44;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	1076526	.	C	CCTGTGACCA,CATCCTGTGACCA	3061.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=64;set=Intersection	GT:AF:DP	1/1:1.00:63
chr5	1078898	rs4975564	A	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	1081767	rs4526148	C	T	12169.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr5	1085604	rs11133624	C	A	11566.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	1093609	rs56276350	G	GGGGCGGGGACT	1913.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	1093860	rs6883411	CC	GT	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	1208964	rs60992377	T	C	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	1212647	rs13180809	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	1213510	rs77928413	C	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	1214005	rs138649942	CCCT	C	4493.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	1214264	rs6554663	A	G	7838.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	1216775	rs4975629	A	G	17592.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr5	1216900	rs35329108	G	A	18051.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr5	1219874	rs6869718	G	A	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	1221199	rs12513763	T	C	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	1225687	rs7705355	C	T	8336.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr5	1225703	rs7724858	A	G	8916.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr5	1232491	rs4975623	G	C	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.48;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	1240848	rs6554684	A	C	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	1243009	rs7721679	A	G	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr5	1244286	.	T	C	327	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=5;HapScore=2;MGOF=4;MMLQ=28;MQ=57.38;NF=4;NR=8;PP=327;QD=30.1476010456;SC=ACACCTCCACTCCCCATCCCC;SbPval=0.61;Source=Platypus;TC=12;TCF=4;TCR=8;TR=12;WE=1244294;WS=1244276;set=Platypus	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	1244425	rs4073918	C	T	9786.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr5	1271524	rs11133719	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	1280128	rs7734992	T	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	1325767	rs466502	A	G	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	1325803	rs465498	A	G	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	1330253	rs452932	T	C	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	1332030	rs200780996	TCTC	T	13307.73	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	1335385	rs3030832	CTG	C	7908.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	1344458	rs31490	G	A	22815.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	1/1:0,872:1.00:872
chr5	1409127	rs429699	T	C	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	1411412	rs6347	T	C	9107.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	1416142	rs40358	C	A	14292.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr5	1432825	rs460000	G	T	6709.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	1432876	rs465130	G	A	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	1432881	rs465989	C	T	3912.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.58;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	1464028	rs6876662	C	T	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	1466813	rs2277007	T	C	16921.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,624:1.00:624
chr5	1466919	rs2277006	G	A	27784.77	.	AC=2;AF=1.00;AN=2;DB;DP=1044;set=Intersection	GT:AD:AF:DP	1/1:0,1042:1.00:1042
chr5	1471109	rs27054	T	C	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	1479678	rs27059	G	C	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	1494909	rs3733796	C	T	5412.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:88,236:0.73:324
chr5	1501780	rs139582215	C	T	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:53,117:0.69:170
chr5	1501790	rs1979396	T	C	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:99,49:0.33:148
chr5	1589387	rs6891099	C	G	115.78	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	1593246	rs6869310	C	T	12702.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:2,472:1.00:474
chr5	1593266	rs6898538	T	C	14384.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:4,562:0.99:566
chr5	1593326	rs6872202	G	A	13817.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr5	1602785	rs200012695	GGTCC	G	634.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.60;MQRankSum=-0.813;QD=20.48;ReadPosRankSum=1.093;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr5	1632758	rs71597631	C	G	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	1708872	rs62338366	C	T	9015.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:140,397:0.74:537
chr5	1708983	rs12523324	G	A	9445.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	1799172	rs6890404	A	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr5	1801426	rs13176353	G	C	5944.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	1801427	rs34372448	C	CG	6063.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	1801432	rs11745573	A	G	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	1801689	rs2242412	A	C	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	1814369	rs3752844	C	T	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr5	1814395	rs36074605	TTGTA	T	6872.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	1814783	rs4147773	T	C	6545.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	1878021	rs2279588	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	1880865	rs4975753	T	C	5279.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:92,235:0.72:327
chr5	1881916	rs2307118	A	C	10581.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:155,465:0.75:620
chr5	1882129	rs2232374	T	G	5418.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:63,219:0.78:282
chr5	1882280	rs2232373	C	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr5	1882579	rs4975757	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:23,25:0.52:48
chr5	1882900	rs6876836	C	T	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	2749057	rs76906087	C	A	2903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.820;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:644,212:0.25:856
chr5	2755031	rs62333234	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr5	2755485	rs62333235	C	T	7661.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr5	3596518	rs3749631	G	T	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	3600334	rs844154	T	C	22630.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,875:1.00:875
chr5	3610452	rs13183610	A	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr5	3610527	rs35761906	T	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.700;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=-0.956;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:95,55:0.37:150
chr5	3610658	rs1373997	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	4087485	rs6869319	G	T	326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.537;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:59,23:0.28:82
chr5	4095647	.	C	CCTTTCCTTTTCTTTT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=11.431;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=-0.477;QD=0.43;ReadPosRankSum=2.065;SOR=2.350;set=HC	GT:AD:AF:DP	0/1:178,14:0.07:192
chr5	4420188	rs140931368	G	GTGTA	8902.73	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:15,271:0.95:286
chr5	4420474	rs2436584	A	G	2404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.25;ReadPosRankSum=0.752;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:41,107:0.72:148
chr5	4702311	rs72088426	CTG	C	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=-0.099;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr5	4702461	rs4315900	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr5	4930051	rs27416	G	T	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr5	4930067	.	A	ATG	320	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=23;MQ=60.0;NF=14;NR=7;PP=320;QD=15.5238095238;SC=TCCCTCACATATGTGTGTGTG;SbPval=0.74;Source=Platypus;TC=31;TCF=19;TCR=12;TR=21;WE=4930075;WS=4930057;set=Platypus	GT:AD:AF:DP	0/1:10,21:0.68:31
chr5	4930087	rs147939241	G	GTGAA	1676.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,43:0.57:75
chr5	4930144	rs35167763	AAG	A	6604.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:61,164:0.73:225
chr5	4930181	rs560366	C	T	6188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.079;QD=27.51;ReadPosRankSum=1.324;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:62,163:0.72:225
chr5	5140632	rs270208	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	5140958	rs270207	T	A	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	5140970	rs270206	C	T	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	5141009	rs59628659	CTT	CT,C	667.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=67;set=Intersection	GT:AF:DP	1/1:0.90:48
chr5	5146223	rs1871468	G	C	10401.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr5	5146335	rs2086310	C	G	13811.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr5	5146377	rs1019747	T	C	10359.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr5	5186415	.	GT	G	230.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.499;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr5	5186416	rs62339905	T	G	1239.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=6.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=2.438;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:53,61:0.54:114
chr5	5186417	.	GT	G	125.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.602;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr5	5187776	rs1863972	G	A	3295.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:61,148:0.71:209
chr5	5189950	rs6859975	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr5	5200220	rs58639468	A	ATC	10554.73	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:35,348:0.91:383
chr5	5200281	rs6555335	C	T	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr5	5200490	rs17762877	T	C	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr5	5223073	rs12652968	A	G	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr5	5232346	rs2913623	G	A	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,23:0.33:70
chr5	5232356	rs150710468	AGG	A	769.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr5	5232398	rs2913624	G	A	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.696;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:113,40:0.26:153
chr5	5234983	rs5865597	A	AG	104.82	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.43;QD=17.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	5235001	rs57587005	A	G	305.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=-1.500;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:1,13:0.93:14
chr5	5235028	rs2913630	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	5235096	rs2913631	A	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	5262766	rs34433845	G	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=2.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.255;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:235,63:0.21:298
chr5	5436609	rs2578552	G	A	3118.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:40,142:0.78:182
chr5	5437380	rs2578550	C	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:29,74:0.72:103
chr5	5443179	rs2578554	G	A	363.98	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,15:0.94:16
chr5	5460569	rs2578565	C	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:49,15:0.23:64
chr5	5460619	rs2619844	G	C	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.664;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:124,39:0.24:163
chr5	5462148	rs2578500	G	A	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;ClippingRankSum=0.000;DB;DP=456;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.825;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:351,104:0.23:455
chr5	5476250	rs11416699	T	TG	158.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr5	6312844	.	C	CCA	71.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr5	6312879	.	C	CAG	130	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=4;MGOF=23;MMLQ=18;MQ=57.1;NF=1;NR=8;PP=130;QD=14.7777777778;SC=CACACACACACAGAGAGAGAG;SbPval=0.65;Source=Platypus;TC=18;TCF=2;TCR=16;TR=9;WE=6312889;WS=6312869;set=Platypus	GT:AD:AF:DP	0/1:9,9:0.50:18
chr5	6312881	.	G	C	76	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=4;MGOF=23;MMLQ=28;MQ=57.37;NF=2;NR=3;PP=76;QD=22.1542425094;SC=CACACACACAGAGAGAGAGAG;SbPval=0.54;Source=Platypus;TC=21;TCF=7;TCR=14;TR=5;WE=6312889;WS=6312869;set=Platypus	GT:AD:AF:DP	1/0:16,5:0.24:21
chr5	6337241	rs4702336	T	A	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=-1.535;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:399,135:0.25:534
chr5	6337375	.	C	A	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.646;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr5	6372585	rs9451	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr5	6378614	rs7723985	G	C	21774.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr5	6491497	rs114385280	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr5	6600200	rs112951498	C	T	5220.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:95,234:0.71:329
chr5	6600492	.	G	GT	663.73	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	6602544	rs2303711	T	C	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	6602668	rs2303710	G	C	4775.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:95,214:0.69:309
chr5	6604205	rs2303709	A	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.714;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:387,111:0.22:498
chr5	6604787	rs13181449	C	T	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.342;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:295,75:0.20:370
chr5	6604931	rs6889694	C	T	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	6604970	rs6888601	G	A	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	6605532	rs2303707	C	A	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr5	6607125	rs3217325	GAAC	G	6594.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	6611757	rs10454287	A	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	6611983	rs3733776	C	A	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	6612027	rs6884320	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr5	6617011	rs6887702	C	A	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	6618186	rs10475338	T	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	6620092	rs2288445	C	T	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr5	6622017	rs2303705	T	G	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:37,161:0.81:198
chr5	6623250	rs74404604	A	G	318.85	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr5	6623432	rs35232789	G	GA	231.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.60;ReadPosRankSum=-0.597;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr5	6632875	rs10076470	G	A	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:57,158:0.73:215
chr5	6632909	rs571550	G	A	2429.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:40,107:0.73:147
chr5	6632942	rs193743	G	T	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:31,83:0.73:114
chr5	6633042	rs10062086	C	T	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr5	6633779	rs248793	C	G	8487.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:121,355:0.75:476
chr5	6645016	rs248805	A	G	5380.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:89,247:0.74:336
chr5	6651970	rs3822430	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr5	6652009	rs8192186	G	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:16,60:0.79:76
chr5	6652129	rs2307268	T	C	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:37,141:0.79:178
chr5	6652252	rs3733773	G	A	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr5	6656210	rs3736316	G	A	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:46,130:0.74:176
chr5	6737571	rs2279657	A	G	1111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.929;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=6.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=0.713;SOR=2.165;set=HC	GT:AD:AF:DP	0/1:12,28:0.70:40
chr5	6737576	rs2279656	G	A	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=6.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.04;ReadPosRankSum=1.306;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr5	6739039	rs573304	T	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr5	6739791	rs419128	G	A	2840.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:56,124:0.69:180
chr5	6748518	rs274682	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	6748659	rs274681	T	C	13501.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr5	6754762	rs274676	T	C	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr5	7306522	rs62341811	G	A	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-0.217;QD=1.83;ReadPosRankSum=0.592;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chr5	7306615	rs11955700	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-10.646;QD=3.17;ReadPosRankSum=0.056;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:145,52:0.26:197
chr5	7306748	rs56373287	T	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-2.447;QD=4.00;ReadPosRankSum=-0.240;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr5	7396706	.	TGCCCCTCGGCCCGCGGCA	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=0;NR=15;PP=2954;QD=20;SC=CGCTCCGGGCTGCCCCTCGGC;SbPval=1.0;Source=Platypus;TC=36;TCF=0;TCR=36;TR=15;WE=7396731;WS=7396696;set=Platypus	GT:AD:AF:DP	0/1:21,15:0.42:36
chr5	7520881	rs13166360	G	T	12286.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:219,557:0.72:776
chr5	7654097	rs111644211	GAGA	G	1889.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr5	7690754	rs2914289	C	T	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr5	7695845	rs11134251	C	A	5124.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:106,226:0.68:332
chr5	7696028	rs11134252	C	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:33,91:0.73:124
chr5	7698282	rs60394679	C	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr5	7698551	rs4257743	C	T	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.041;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:123,38:0.24:161
chr5	7712810	rs6555488	C	T	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	7717396	rs6878196	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	7757705	rs4072341	T	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.438;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=5.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.740;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr5	7757715	rs4479814	C	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.174;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=7.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.402;SOR=2.112;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr5	7757776	rs79709987	C	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=1.613;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr5	7757779	rs78321927	C	T	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.509;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr5	7757780	rs74921577	A	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.509;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr5	7802363	rs2290910	C	T	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:42,99:0.70:141
chr5	7804706	rs148142196	C	G	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.859;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:336,96:0.22:432
chr5	7826648	rs141881348	AAAC	A	1516.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;MQ=60.31;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	7826680	rs6887726	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	7835555	rs6883562	C	G	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:245,118:0.33:363
chr5	7835616	rs34574678	G	GA	3676.73	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:95,194:0.67:289
chr5	7835685	rs179044	G	T	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	7850898	.	TGCCCAGCCGCCCAGCC	T,TGCCCAGCC	1199.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=38;set=Intersection	GT:AF:DP	1/2:0.73,0.27:30
chr5	7868313	.	GAA	G	40.82	.	AC=1;AF=0.500;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=10.20;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr5	7885782	rs34487083	A	AT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=1.213;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:190,39:0.17:229
chr5	7891402	.	AT	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=1.078;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	8461166	rs341899	T	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	9043142	rs3834271	T	TA	574.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr5	9050410	rs257098	C	T	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr5	9053945	rs257095	C	T	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:32,101:0.76:133
chr5	9066464	rs786847	A	G	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:52,137:0.72:189
chr5	9066802	rs786846	G	A	3369.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:61,143:0.70:204
chr5	9154659	rs1806151	G	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	9201973	rs40683	C	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.956;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr5	9265602	rs7734564	C	T	8553.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	9280957	rs6555597	C	A	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	10227548	rs2136197	C	A	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	10227823	rs3080459	C	CCT	1310.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	10235490	rs2292264	G	A	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	10236927	rs2292263	C	T	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	10237036	rs12653481	A	G	8985.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr5	10239261	rs2438652	G	A	25300.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr5	10239278	rs2252505	C	T	24659.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr5	10250047	rs2607301	C	A	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=2.334;QD=16.41;ReadPosRankSum=-0.486;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:9,47:0.84:56
chr5	10250430	rs2548546	G	A	5637.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:101,253:0.71:354
chr5	10250443	rs2578618	T	C	5387.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:92,231:0.72:323
chr5	10254817	rs2578617	A	G	5243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=0.351;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:89,239:0.73:328
chr5	10255021	rs2607294	T	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:18,60:0.77:78
chr5	10255083	rs2578616	A	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr5	10256161	rs1042392	T	C	4649.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:68,217:0.76:285
chr5	10256172	rs11557652	A	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.504;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:199,54:0.21:253
chr5	10258125	rs2457156	G	A	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:40,108:0.73:148
chr5	10261542	rs2607327	C	T	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	10261966	rs2244717	G	A	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:20,71:0.78:91
chr5	10262740	rs2578642	C	A	9680.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:151,447:0.75:598
chr5	10263451	.	TGGAG	T	2944	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=2;NR=105;PP=2944;QD=20;SC=CGCCTCTGCGTGGAGGGGGGG;SbPval=0.7;Source=Platypus;TC=127;TCF=3;TCR=124;TR=107;WE=10263472;WS=10263441;set=Platypus	GT:AD:AF:DP	1/0:20,107:0.84:127
chr5	10263453	rs147103051	GA	G	7555.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=2.249;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	10263457	rs58620077	G	A	6038.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.383;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.27;ReadPosRankSum=0.842;SOR=0.281;set=HC	GT:AD:AF:DP	0/1:11,151:0.93:162
chr5	10263461	rs370306096	GGGA	G	5998.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=39.72;ReadPosRankSum=1.203;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:11,140:0.93:151
chr5	10263582	rs2292267	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.455;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr5	10264962	rs544	A	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr5	10282396	rs10067744	A	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.175;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:96,35:0.27:131
chr5	10282479	rs10052785	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr5	10282519	rs10067826	A	C	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.235;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=8.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.121;SOR=0.085;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr5	10390340	rs11449510	G	GT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.16;ReadPosRankSum=1.101;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr5	10417589	rs2967956	G	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	10442496	rs2567577	T	C	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	10448247	rs1976360	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	10564846	rs814576	C	T	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	10565027	rs1103749	C	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	10624887	rs1531839	T	C	4040.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:55,175:0.76:230
chr5	10638180	rs11745612	T	C	3028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.069;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=0.329;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:41,137:0.77:178
chr5	10638364	rs6889196	A	G	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:26,69:0.73:95
chr5	10649784	rs113222960	G	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr5	10650150	rs56969869	A	G	1957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.279;QD=16.05;ReadPosRankSum=-1.418;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:29,93:0.76:122
chr5	10650251	rs140897444	CGGGGCT	C	2459.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:16,63:0.80:79
chr5	10650324	rs13354827	TT	GG	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;JOINED;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr5	10664999	rs111384023	C	G	2186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.80;ReadPosRankSum=-0.960;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,53:0.75:71
chr5	10665004	rs115907161	C	T	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.94;ReadPosRankSum=-1.542;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:18,56:0.76:74
chr5	10665259	rs11954194	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr5	10748231	rs267944	C	T	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr5	10748462	rs267943	C	T	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	10761182	rs267927	A	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	10973927	rs1566624	T	C	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr5	10981720	rs58618024	G	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.823;QD=2.52;ReadPosRankSum=-1.788;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr5	10981879	rs199829191	C	CTTTA	1121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.032;QD=5.67;ReadPosRankSum=0.055;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:159,39:0.20:198
chr5	10981921	rs2228958	A	T	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.940;QD=2.47;ReadPosRankSum=1.911;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:141,38:0.21:179
chr5	11082762	rs2277053	T	C	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	11084189	rs1024621	T	C	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr5	11098987	rs2301851	C	T	347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=4.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.269;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr5	11110951	rs115886472	T	G	5728.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:64,261:0.80:325
chr5	11117384	rs2285976	A	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr5	11117583	rs2285975	C	T	2296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.953;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:755,194:0.20:949
chr5	11159657	rs1990003	T	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	11397188	rs17802557	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,16:0.26:62
chr5	11412302	rs31750	C	T	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	13692279	rs2166337	A	T	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	13701327	rs3734112	A	G	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	13701525	rs3734111	T	C	10552.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	13701536	rs3734110	T	C	10165.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	13701617	rs61338089	GA	G	787.74	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:8,49:0.86:57
chr5	13701654	rs13162313	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;MQ=60.36;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	13714740	rs30175	G	A	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	13719022	rs30169	T	G	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	13719089	rs30168	G	A	8301.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr5	13754394	rs2401809	C	T	9889.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr5	13759172	rs34516765	TA	T	402.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr5	13762972	rs6554812	T	C	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-2.814;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:334,131:0.28:465
chr5	13763039	rs6554813	G	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.504;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr5	13769257	rs12655133	T	A	4211.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:63,180:0.74:243
chr5	13769356	rs36092508	GT	G	222.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-0.156;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr5	13770757	rs138234449	C	CA	1691.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	13776449	.	G	T	2581.77	.	AC=1;AF=0.500;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	0/1:39,101:0.72:140
chr5	13776487	rs34413787	C	T	4953.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:67,209:0.76:276
chr5	13788886	rs10513155	C	A	11650.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:224,529:0.70:753
chr5	13810529	rs31238	C	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	13842027	.	C	CA	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.333;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr5	13850739	rs4701988	T	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:24,75:0.76:99
chr5	13859807	rs1867677	G	T	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	13876664	rs1445804	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr5	13882841	rs10057007	A	G	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	13885023	.	GCACA	G	1605.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chr5	13886244	rs201639682	CAAA	C,CA	2638.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.093;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.337;QD=26.93;ReadPosRankSum=1.495;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:3,75,20:0.77,0.20:98
chr5	13894894	rs4701997	T	A	12752.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr5	13914832	rs72735064	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr5	13928085	rs12659700	T	C	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	13944512	rs339445	A	C	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	14183866	rs354302	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	14183979	rs71597901	CAG	C	1826.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	14184022	rs354301	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	14184079	rs354300	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	14184116	rs16903264	C	T	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.98;ReadPosRankSum=-0.406;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:25,65:0.72:90
chr5	14184211	rs354299	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr5	14184254	rs354298	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	14290805	rs30629	G	A	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.354;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=3.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=1.475;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:212,76:0.26:288
chr5	14366840	rs30784	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr5	14366904	rs115121042	C	T	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:57,131:0.70:188
chr5	14369425	rs116225615	G	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.529;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:202,36:0.15:238
chr5	14377962	rs30769	A	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=0.065;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr5	14378068	rs30770	T	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.159;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:122,34:0.22:156
chr5	14388797	rs57751910	G	GT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.853;QD=1.74;ReadPosRankSum=-1.380;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:84,33:0.28:117
chr5	14420027	rs30612	A	C	11348.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr5	14462816	rs27100	C	T	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:40,130:0.76:170
chr5	14472626	rs26186	T	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	14474283	rs11749307	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.611;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.565;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:150,51:0.25:201
chr5	14479938	rs26173	G	A	4421.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	14481270	rs111593684	TA	T	1806.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:34,112:0.77:146
chr5	14485161	.	G	GT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.835;QD=1.51;ReadPosRankSum=1.010;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:119,38:0.24:157
chr5	14509487	rs150510776	T	TTG	513.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr5	14601041	rs34891995	CTTT	C	311.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.27;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	14610184	rs25960	C	G	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	14664821	rs250435	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	14678996	rs31930	G	A	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	14741921	rs187483	A	C	6894.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:141,325:0.70:466
chr5	14749551	rs697569	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr5	14751399	rs697570	C	T	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr5	14871620	rs139106733	AGGGGCGAC	A	1632.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	15616330	rs142993120	TTTG	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.526;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:35,5:0.12:40
chr5	15927905	rs70938037	A	AAGAC	2624.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.22;MQRankSum=0.672;QD=48.61;ReadPosRankSum=0.000;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:1,53:0.98:54
chr5	15927927	rs66504704	A	G	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	16091242	rs11389357	G	GA	605.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr5	16177807	rs2582666	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.103;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=1.193;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:113,28:0.20:141
chr5	16179125	rs342550	C	T	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.262;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr5	16474778	rs11428210	C	CT	1175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.532;QD=9.96;ReadPosRankSum=2.147;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:33,85:0.72:118
chr5	16477751	rs162850	C	A	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	16478120	rs162849	A	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	16478200	rs162848	G	A	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	16479151	rs6883888	A	G	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	16479220	rs33692	A	G	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	16508674	rs332811	A	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.675;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:207,63:0.23:270
chr5	16508898	rs33684	T	C	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	16572322	rs11338270	CT	C	425.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=10.866;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.763;QD=7.88;ReadPosRankSum=0.079;SOR=0.047;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chr5	16617099	rs35003	A	G	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	16667003	rs26743	C	T	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	16668256	rs35579	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	16670618	rs27431	C	T	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr5	16672639	rs4702164	T	C	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr5	16673975	rs25901	C	G	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	16676103	rs28057	T	C	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr5	16679914	rs10060411	G	A	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:9,39:0.81:48
chr5	16679926	rs3217321	G	GC	1528.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chr5	16679966	rs35580	C	T	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	16681966	rs399833	G	A	4978.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:51,214:0.81:265
chr5	16684109	rs2303703	T	C	3897.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:82,175:0.68:257
chr5	16684143	rs26315	A	T	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.303;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:146,63:0.30:209
chr5	16699512	rs256930	G	A	595.89	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,22:0.88:25
chr5	16704806	rs3860136	G	A	11030.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:171,488:0.74:659
chr5	16711365	rs3214558	CA	C	4435.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:9,229:0.96:238
chr5	16711451	rs27552	G	T	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	16762646	rs31511	T	C	5649.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	16764255	rs375881422	CA	C	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:7,95:0.93:102
chr5	16764334	rs250341	C	T	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.339;QD=1.65;ReadPosRankSum=0.424;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:317,67:0.17:384
chr5	16766093	rs2561232	C	T	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	16769273	rs11750538	G	A	3154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.636;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=-0.141;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:37,142:0.79:179
chr5	16783437	rs71595983	T	TAAAC	9015.73	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:73,215:0.75:288
chr5	16783593	rs72732235	G	A	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.049;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:438,168:0.28:606
chr5	16794916	rs396514	G	A	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	16795027	rs35681033	CA	C	5353.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	16818363	rs12188582	A	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	16877701	rs7710976	C	G	1913.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:14,76:0.84:90
chr5	16916071	rs145081788	GAA	G	1248.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=22.70;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:8,47:0.85:55
chr5	17276053	rs59080603	CCT	C	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.464;QD=6.79;ReadPosRankSum=-0.452;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:46,26:0.36:72
chr5	19473925	rs73760020	C	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr5	19483354	.	G	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.078;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-0.515;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:30,48:0.62:78
chr5	19591174	rs17285716	A	G	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.771;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-1.923;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:168,55:0.25:223
chr5	19721490	rs12187552	T	C	8993.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr5	21459851	rs181185806	C	T	3570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-0.278;QD=17.33;ReadPosRankSum=-2.858;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:45,161:0.78:206
chr5	21462082	rs12657455	G	A	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr5	21751715	rs10657805	C	CAGAA	835.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	21751741	rs28638343	T	G,TTGTGTGTGTG	1626.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;QD=58.10;SOR=2.985;set=HC	GT:AD:AF:DP	1/2:0,14,14:0.50,0.50:28
chr5	21752050	rs6451992	A	G	12829.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	21752056	rs6451993	A	G	12976.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	21760602	rs2303748	C	A	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	21802662	rs6897177	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	22078584	rs4371716	C	T	8233.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:328,399:0.55:727
chr5	23510158	rs34033521	AT	A	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.332;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:92,56:0.38:148
chr5	23510203	rs2973615	A	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	23521097	rs75883850	G	A	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:118,90:0.43:208
chr5	23523348	rs1874165	C	T	8797.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr5	23527919	rs2099081	A	G	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	23975952	rs10037197	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr5	23976115	rs1501940	G	A	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:166,172:0.51:338
chr5	24498690	rs3815909	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	24509947	rs3797171	C	A	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	24511368	rs3797168	C	T	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	24511654	.	CAGAGAG	C,CAG	884.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.83;QD=30.51;SOR=2.303;set=HC	GT:AD:AF:DP	1/2:3,10,16:0.34,0.55:29
chr5	25190755	rs112758294	G	A	2866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=0.403;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:99,138:0.58:237
chr5	26903557	rs9687840	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:4,25:0.86:29
chr5	26905920	rs5866810	GT	G	957.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,49:0.96:51
chr5	31302288	rs2287582	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:207,84:0.29:291
chr5	31317494	rs2302904	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.73;ReadPosRankSum=1.684;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:515,112:0.18:627
chr5	31317529	rs2302903	A	G	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.72;ReadPosRankSum=-0.381;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:547,121:0.18:668
chr5	31317952	rs2229575	T	C	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=2.691;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:323,98:0.23:421
chr5	31322851	rs2962790	A	G	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	31401447	rs10719	A	G	12995.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr5	31435975	.	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.22;ReadPosRankSum=-0.205;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:183,31:0.14:214
chr5	31467952	rs17408716	A	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr5	31472087	rs6885959	T	A	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	31472117	rs3763075	G	C	9713.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr5	31483596	rs10052174	G	A	9057.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr5	31483753	rs11341915	GA	G	1331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.472;QD=10.01;ReadPosRankSum=1.819;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:29,104:0.78:133
chr5	31485230	rs7712436	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	31486540	rs7735863	A	G	14104.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:1,536:1.00:537
chr5	31508933	rs56327412	G	GTT,GTTT	3015.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.44;QD=40.21;SOR=1.000;set=HC	GT:AD:AF:DP	1/2:2,54,19:0.72,0.25:75
chr5	31508945	rs4374769	C	T	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.15;QD=43.69;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	31515373	rs7730136	C	T	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	31515657	rs55656741	G	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	31529299	rs6859527	A	G	1953.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	31529306	rs6450850	T	C	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	31532429	rs2291109	A	T	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	31532789	rs17409893	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	31538692	rs17410000	A	C	8718.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	31541142	rs17410035	G	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	31541212	rs59397192	A	AGT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.899;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr5	32000397	rs115911339	T	C	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:186,183:0.50:369
chr5	32000483	rs10054504	T	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	32037569	rs923834	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr5	32053749	rs13165981	T	C	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:51,48:0.48:99
chr5	32054092	rs149414	C	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	32057651	rs161545	G	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	32058115	rs151861	A	G	16733.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr5	32060985	rs35665699	T	TATC	4416.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	32069863	rs79743260	T	C	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:39,58:0.60:97
chr5	32069910	rs6862076	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr5	32071404	rs77759732	C	T	4881.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:229,225:0.50:454
chr5	32074173	rs79901850	G	A	11552.77	.	AC=1;AF=0.500;AN=2;DB;DP=954;set=Intersection	GT:AD:AF:DP	0/1:423,529:0.56:952
chr5	32074392	rs2291114	G	A	10049.77	.	AC=1;AF=0.500;AN=2;DB;DP=818;set=Intersection	GT:AD:AF:DP	0/1:359,456:0.56:815
chr5	32087228	rs157494	C	T	4645.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:112,117:0.51:229
chr5	32087253	rs157495	A	G	5469.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:173,169:0.49:342
chr5	32087326	rs3101878	C	A	9069.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:366,425:0.54:791
chr5	32087374	rs157496	A	G	9237.77	.	AC=1;AF=0.500;AN=2;DB;DP=882;set=Intersection	GT:AD:AF:DP	0/1:425,454:0.52:879
chr5	32087430	rs3135427	G	A	11798.77	.	AC=1;AF=0.500;AN=2;DB;DP=1049;set=Intersection	GT:AD:AF:DP	0/1:477,568:0.54:1045
chr5	32087802	rs157497	A	G	6692.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:325,331:0.50:656
chr5	32088500	rs3101873	C	T	13404.77	.	AC=1;AF=0.500;AN=2;DB;DP=1202;set=Intersection	GT:AD:AF:DP	0/1:576,622:0.52:1198
chr5	32101168	rs2279232	A	T	3792.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:244,191:0.44:435
chr5	32135599	rs161539	G	A	5195.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	32209751	rs202157337	TA	T	530.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.317;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-1.452;QD=10.41;ReadPosRankSum=-1.477;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr5	32209753	rs147321365	A	T	458.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-0.530;QD=8.82;ReadPosRankSum=-2.491;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:19,33:0.63:52
chr5	32239248	rs61757721	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,82:0.52:157
chr5	32242381	rs7729256	G	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	32248077	rs11960898	C	T	4708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.220;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:269,242:0.47:511
chr5	32263099	rs61418287	G	T	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,87:0.56:154
chr5	32268614	rs72294899	T	TA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.370;QD=4.70;ReadPosRankSum=1.873;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr5	32270747	rs59928961	C	G	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,68:0.64:107
chr5	32276634	rs57425852	T	C	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	32379210	rs1862636	G	A	12763.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr5	32387558	rs41270313	T	C	3918.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:216,187:0.46:403
chr5	32388471	rs889318	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr5	32388485	rs3811972	G	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr5	32400266	rs1051489	A	G	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:120,168:0.58:288
chr5	32403346	rs4867440	C	T	18845.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr5	32415360	rs5867145	TA	T	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	32417694	rs178935	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	32419805	rs7445799	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr5	32444199	rs2922295	C	G	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=-0.427;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:40,32:0.44:72
chr5	32444286	rs183443	A	G	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=1.291;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:136,96:0.41:232
chr5	32522994	rs17439827	A	G	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:123,160:0.57:283
chr5	32523298	rs687659	T	A	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:195,227:0.54:422
chr5	32523343	rs2457151	C	T	13176.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr5	32591804	.	AT	A	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=2.643;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.651;QD=3.33;ReadPosRankSum=-0.998;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:40,35:0.47:75
chr5	32689008	rs1458050	C	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:62,24:0.28:86
chr5	32710965	rs56022335	GT	G	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.527;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:125,55:0.31:180
chr5	32711000	.	ATG	A	87.73	.	AC=1;AF=0.500;AN=2;DP=145;set=Intersection	GT:AD:AF:DP	0/1:79,12:0.13:91
chr5	32716474	rs34628434	C	CT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=2.158;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:76,35:0.32:111
chr5	32716535	rs11750438	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.006;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:142,48:0.25:190
chr5	32725072	rs1147224	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	32738891	rs2292026	C	T	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr5	32775047	rs1173743	G	T	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:18,73:0.80:91
chr5	32784776	rs2246427	A	G	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,105:0.68:155
chr5	32786389	rs2270915	A	G	6990.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:135,300:0.69:435
chr5	32786465	.	C	CT	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.999;QD=0.69;ReadPosRankSum=2.201;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:400,84:0.17:484
chr5	32789852	rs1173756	T	C	8877.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:162,415:0.72:577
chr5	33441124	rs2304621	C	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:31,109:0.78:140
chr5	33448962	rs5867190	A	AT	1607.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	33452643	rs73074385	A	G	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:27,83:0.75:110
chr5	33453368	.	CTT	C	1085.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=-0.474;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:66,63:0.49:129
chr5	33455616	rs6880623	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr5	33456210	rs3765144	A	G	1776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.90;ReadPosRankSum=-1.340;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:14,80:0.85:94
chr5	33457535	rs2270903	T	A	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:39,130:0.77:169
chr5	33457618	rs1003000	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	33458636	rs3765145	G	A	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:86,192:0.69:278
chr5	33458833	rs3765146	T	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:16,54:0.77:70
chr5	33460949	rs58771215	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:16,61:0.79:77
chr5	33461226	rs2270904	A	G	1933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=1.063;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:24,84:0.78:108
chr5	33461355	rs2270905	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=0.127;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr5	33463736	rs79338682	G	T	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:33,92:0.74:125
chr5	33546113	rs11338120	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.913;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=1.429;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr5	33561028	rs35553442	GA	G	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.964;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:71,25:0.26:96
chr5	33595996	rs10461924	C	T	9262.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr5	33596193	rs10461925	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	33596224	rs10461703	C	T	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	33596243	rs10461704	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	33616311	rs4078398	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	33637596	rs4076945	G	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=10.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.109;SOR=0.099;set=HC	GT:AD:AF:DP	0/1:57,13:0.19:70
chr5	33637891	rs4076946	C	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=0.754;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr5	33637899	rs4076947	G	A	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=1.116;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr5	33642163	rs60892887	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:83,34:0.29:117
chr5	33643395	rs10066043	A	T	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	33643617	rs4866409	C	T	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	33648842	rs34079160	GTT	G	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	33648906	rs6870538	G	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	33649220	rs4866353	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	33649637	rs4242082	G	A	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	33649807	rs4504387	C	A	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	33649905	rs4621563	G	A	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	33684287	rs72741422	G	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	33751389	rs5867210	T	TA	700.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr5	33751454	rs1530507	A	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:60,175:0.74:235
chr5	33881669	rs11442532	C	CT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=1.730;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:57,16:0.22:73
chr5	33951693	rs16891982	C	G	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	33954511	rs2287949	T	C	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	33963731	rs141348470	AAAC	A	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	33964210	rs183671	T	G	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	33964241	rs6451048	A	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	33969149	rs11272324	A	ACTCTCTCTCTCTCTCTCTCTCT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=111;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.000;QD=4.52;ReadPosRankSum=-0.414;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr5	33969170	.	C	CTCTCTCTCTCTCTCTCTCTCTCTG	2997	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=29;MQ=54.14;NF=2;NR=8;PP=2997;QD=20;SC=CTCTCTCTCTCTGTGTGTGTG;SbPval=0.23;Source=Platypus;TC=44;TCF=4;TCR=40;TR=10;WE=33969178;WS=33969160;set=Platypus	GT:AD:AF:DP	1/0:34,10:0.23:44
chr5	33984743	.	G	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.862;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr5	33988535	rs15612	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:14,48:0.77:62
chr5	33994182	rs16892096	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.216;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:64,14:0.18:78
chr5	34033670	rs299594	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=1.033;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:133,32:0.19:165
chr5	34035609	rs17583316	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-0.281;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr5	34687911	rs2279604	G	A	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	34688210	rs142375133	CGACAAA	C	10188.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr5	34716120	rs1867714	G	A	832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-1.510;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:57,25:0.30:82
chr5	34716124	rs1867715	A	G	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.024;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=-0.213;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:63,26:0.29:89
chr5	34716270	rs1867716	A	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.377;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.137;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:152,35:0.19:187
chr5	34757505	rs6865288	A	G	4214.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:70,194:0.73:264
chr5	34795981	rs6897719	C	T	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=1.117;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:109,33:0.23:142
chr5	34807928	rs6895634	C	T	6640.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:120,302:0.72:422
chr5	34808652	rs111951383	G	A	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.162;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:185,64:0.26:249
chr5	34808797	rs113312119	T	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:94,45:0.32:139
chr5	34810971	rs111531050	G	A	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.133;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr5	34811131	rs35607113	G	A	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.267;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.477;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:249,91:0.27:340
chr5	34811137	rs2271522	T	G	5259.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:85,241:0.74:326
chr5	34811794	rs114935797	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,18:0.27:66
chr5	34812408	rs112990724	A	G	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-0.189;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:60,21:0.26:81
chr5	34812489	rs111847320	A	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=-0.074;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr5	34814900	rs17522675	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-1.159;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr5	34818976	rs3884194	GT	G,GTT	2106.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=170;set=Intersection	GT:AF:DP	1/2:0.72,0.22:144
chr5	34821825	rs10461947	C	T	4197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=1.990;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:76,187:0.71:263
chr5	34822926	rs7730728	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	34824555	rs1048944	G	T	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	34830788	rs17523026	C	T	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.829;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=3.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.500;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:324,84:0.21:408
chr5	34840841	rs6451173	A	G	14452.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr5	34845473	rs336486	C	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=0.788;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr5	34863220	rs3846632	G	T	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	34925312	.	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.893;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.994;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr5	34945812	rs6868348	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	34954588	rs37437	T	C	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	35003683	rs11426533	C	CT	365.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.707;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr5	35010138	rs466067	A	G	12937.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,494:1.00:494
chr5	35013010	rs200794102	AAG	A	2233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.259;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=3.309;QD=7.84;ReadPosRankSum=0.270;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:208,77:0.27:285
chr5	35026683	rs344513	A	G	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr5	35033047	rs2291698	C	T	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	35033526	rs2291701	C	T	6301.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	35033605	rs180749	G	A	5067.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	35037006	rs171081	T	C	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	35039437	rs2279651	A	G	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	35039486	rs37370	C	T	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	35641582	rs6897513	A	C	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=0.340;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:186,62:0.25:248
chr5	35643615	rs10941252	G	A	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.911;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:158,47:0.23:205
chr5	35654711	rs2270558	C	T	1662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-1.718;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:293,109:0.27:402
chr5	35659355	rs9292598	T	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr5	35700598	rs6451206	T	C	4823.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:78,216:0.73:294
chr5	35702209	rs35297265	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr5	35702212	rs11357084	GA	G	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr5	35702306	rs6874120	A	G	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:36,104:0.74:140
chr5	35704584	rs7448971	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr5	35704892	rs10058349	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr5	35705844	rs72738833	A	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	35709095	rs13170082	C	T	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr5	35709184	rs13170390	G	C	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	35712780	rs10078803	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	35713007	rs10073537	T	G	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	35739960	rs10043875	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	35753715	rs11957963	T	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	35753924	rs62353693	T	C	5545.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:90,248:0.73:338
chr5	35763877	rs11298650	AG	A	4075.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	35763895	rs6876874	T	C	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	35763916	rs6895801	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	35764587	rs4869466	G	A	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	35764603	rs4869467	A	G	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	35764696	rs4242258	C	T	11325.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	35771773	rs200436477	C	T	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.533;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.067;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:254,79:0.24:333
chr5	35789164	rs1494576	G	A	1319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.661;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:336,97:0.22:433
chr5	35792356	rs7730148	A	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	35795738	rs716971	T	C	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr5	35799994	rs3822735	A	G	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.320;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.357;SOR=1.488;set=HC	GT:AD:AF:DP	0/1:137,24:0.15:161
chr5	35807070	rs36093359	T	C	1758.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:30,78:0.72:108
chr5	35807455	rs7736291	T	G	2731.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:38,113:0.75:151
chr5	35857177	rs1353252	G	C	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:95,236:0.71:331
chr5	35857207	rs1353251	C	T	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.595;QD=4.04;ReadPosRankSum=0.500;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:178,65:0.27:243
chr5	35857235	rs1494561	C	G	3115.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:49,132:0.73:181
chr5	35857262	rs1353250	A	G	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:33,95:0.74:128
chr5	35857308	rs5867289	T	TC	1533.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr5	35861068	rs1494558	T	C	7493.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:120,339:0.74:459
chr5	35871190	rs1494555	G	A	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:63,205:0.76:268
chr5	35875593	rs987106	A	T	7215.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:108,326:0.75:434
chr5	35876274	rs3194051	A	G	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:49,123:0.72:172
chr5	35904614	rs1833907	G	T	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:38,81:0.68:119
chr5	35910419	rs1445899	C	T	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=691;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.122;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:554,134:0.19:688
chr5	35910529	rs1445898	C	T	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=3.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.562;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:259,85:0.25:344
chr5	35921069	rs6859892	T	C	19282.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr5	35921266	rs3734107	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chr5	35954588	rs700164	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.694;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-1.804;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:213,53:0.20:266
chr5	35962873	rs76212882	C	T	3639.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:51,157:0.75:208
chr5	35962984	rs1070895	A	G	7891.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	35965970	rs3756669	A	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.524;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-1.194;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr5	35968000	rs10491431	C	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr5	36035727	rs76748392	A	G	948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.665;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=10.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.971;SOR=0.183;set=HC	GT:AD:AF:DP	0/1:115,57:0.33:172
chr5	36037778	rs2247611	G	A	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	36049677	rs1287273	C	A	75.81	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr5	36051834	rs72303780	ATCCG	A	1319.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,60:0.71:85
chr5	36111167	rs43189	A	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	36123065	rs141044130	TA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-1.242;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr5	36124514	rs13177876	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	36136675	rs267758	C	T	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	36137620	rs267759	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	36141386	rs13156321	T	A	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	36142589	rs267764	T	A	4280.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr5	36142648	rs12658867	A	G	8060.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr5	36142818	.	C	CT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=0.956;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr5	36143392	rs267766	C	T	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr5	36166827	rs34784319	C	CT	990.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.809;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.627;QD=11.25;ReadPosRankSum=-0.636;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:18,70:0.80:88
chr5	36168582	rs7736391	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	36176874	rs40030	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	36195448	rs11952882	A	G	5223.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:84,221:0.72:305
chr5	36200487	.	A	T	266.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr5	36201336	rs7705396	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	36207424	rs2303163	G	T	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr5	36217764	rs111441491	G	GTTAATCA	5932.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	36217997	rs3761973	T	A	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.409;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=3.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.889;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:197,69:0.26:266
chr5	36227619	rs190440332	T	C	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:65,152:0.70:217
chr5	36241922	rs62356073	G	A	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:73,175:0.71:248
chr5	36241955	rs74717771	T	C	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=1.193;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:132,45:0.25:177
chr5	36241988	rs34888491	G	C	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	36253937	rs4869473	G	A	9743.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr5	36260976	rs6881086	T	A	2522.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	36268218	rs6869599	A	G	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	36269551	rs1035480	G	C	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	36271491	rs5867310	CT	C	391.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	36301362	rs10941287	T	A	2975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.35;ReadPosRankSum=3.315;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:18,74:0.80:92
chr5	36301369	rs884692	T	G	3145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.84;ReadPosRankSum=2.609;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:21,81:0.79:102
chr5	36301420	rs884694	G	T	3851.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:49,161:0.77:210
chr5	36613053	rs7728680	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.092;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.537;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr5	36680125	rs2303716	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	36680713	rs3733811	C	T	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:53,148:0.74:201
chr5	36683801	rs56038114	T	C	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.491;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr5	36683809	rs11284736	CA	C	617.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.400;QD=21.30;ReadPosRankSum=0.136;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr5	36683888	rs11748249	G	A	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:16,78:0.83:94
chr5	36683903	rs56039629	C	T	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.460;QD=2.19;ReadPosRankSum=-1.297;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr5	36686404	rs2229894	G	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr5	36958085	rs141750225	CAA	C	283.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.90;ReadPosRankSum=0.403;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr5	37007629	rs159753	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr5	37010404	rs35011787	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr5	37019354	rs300060	G	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr5	37024595	rs116198732	G	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr5	37036449	rs10554564	GTA	G	316.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=31.67;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	37036492	rs61748200	C	T	574.18	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr5	37061261	rs188541	A	G	595.18	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr5	37115000	rs11286555	CA	C	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.695;QD=7.33;ReadPosRankSum=0.693;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:17,27:0.61:44
chr5	37139291	rs301870	T	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,38:0.84:45
chr5	37139474	rs34646696	TA	T	1298.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr5	37173930	rs10076911	A	C	6453.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:101,293:0.74:394
chr5	37175888	rs148926730	T	TTTA	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr5	37176091	rs10805625	A	G	1096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-1.470;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:22,53:0.71:75
chr5	37180351	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=-0.801;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr5	37182902	rs75589774	G	A	5049.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:71,215:0.75:286
chr5	37187489	rs78164677	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr5	37224485	rs77589724	T	C	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr5	37247700	rs6876576	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	37247899	.	CAT	C	451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.53;ReadPosRankSum=2.119;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr5	37292239	rs216392	G	A	4728.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:54,200:0.79:254
chr5	37293215	rs2272602	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	37307299	.	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=-1.032;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr5	37318295	rs217797	G	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr5	37325940	rs79019688	T	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr5	37331984	rs141263591	T	A	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:29,78:0.73:107
chr5	37333727	rs150594	A	G	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr5	37337981	rs141688173	T	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=-1.671;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:72,14:0.16:86
chr5	37350390	rs217776	C	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:26,83:0.76:109
chr5	37364443	rs217852	C	T	7548.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr5	37392279	rs11335326	GT	G	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.696;QD=7.24;ReadPosRankSum=-0.983;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr5	37516809	rs13176408	A	T	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.45;ReadPosRankSum=1.664;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr5	37516814	rs1967541	C	T	97.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.25;ReadPosRankSum=0.619;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	37687843	rs35188065	AT	A	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.557;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:64,22:0.26:86
chr5	37724932	rs3214462	CATT	C	1977.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:14,49:0.78:63
chr5	37724990	rs7444391	G	A	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	37752415	rs1549252	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	37752460	rs1549251	T	C	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	37752497	rs2973079	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	37835588	rs45455796	T	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr5	38482504	rs2256595	C	T	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr5	38484890	rs146205670	G	A	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=751;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.940;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:565,182:0.24:747
chr5	38504303	rs16903989	A	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr5	38510481	rs34968906	AC	A	2290.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,78:0.97:80
chr5	38512154	rs1037033	T	C	1405.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr5	38523740	rs3729598	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr5	38527228	rs2289779	T	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.196;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr5	38527308	rs3729734	G	A	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-1.228;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:84,26:0.24:110
chr5	38528951	rs10637374	G	GAC	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:84,19:0.18:103
chr5	38528967	.	CACACACACACACAG	C	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-1.066;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:97,12:0.11:109
chr5	38528969	rs71604901	CACACACACACAG	C	1511.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=5.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=1.937;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:48,59:0.55:107
chr5	38529002	rs62355821	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.357;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:65,17:0.21:82
chr5	38530485	rs11293177	CA	C	214.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	38822040	rs413278	A	G	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=2.081;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr5	38823254	rs369886	C	T	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=0.548;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:102,20:0.16:122
chr5	38823358	rs581668	C	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.640;QD=1.77;ReadPosRankSum=0.355;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:208,46:0.18:254
chr5	38876573	rs357271	T	C	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	38881628	rs525735	G	T	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	38903923	rs11949864	T	C	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	38904363	rs1239334	C	T	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	38917574	rs357260	G	A	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	38917904	rs357262	G	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	38919158	rs10941412	G	A	14173.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr5	38923171	rs357293	T	C	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	38931919	rs357277	G	A	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	38932466	rs357278	A	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	38945919	rs62352642	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	38950776	rs2115949	G	A	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	38953427	rs2115948	T	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	38953447	rs2115947	T	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	38953665	rs33912683	G	GA	978.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:3,47:0.94:50
chr5	38954994	rs9292726	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	38955796	rs2043112	G	A	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	38958968	rs6868591	A	C	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	38959794	rs2115946	T	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	38962543	rs7729745	A	G	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	38966903	rs11435048	A	AT,ATT	715.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.207;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=0.979;SOR=1.542;set=HC	GT:AD:AF:DP	1/2:4,17,22:0.40,0.51:43
chr5	38971865	rs13165709	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	38971912	rs7732615	T	A	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	38990944	.	G	GAT	643	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=21;MMLQ=28;MQ=64.78;NF=23;NR=1;PP=643;QD=27.375;SC=TGAGATATATGAGATATATGA;SbPval=0.63;Source=Platypus;TC=24;TCF=23;TCR=1;TR=24;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	38990946	.	G	T	590	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=21;MMLQ=28;MQ=64.4;NF=23;NR=1;PP=590;QD=26.0321338561;SC=AGATATATGAGATATATGATA;SbPval=0.59;Source=Platypus;TC=27;TCF=26;TCR=1;TR=24;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:3,24:0.89:27
chr5	38990957	.	T	G	913	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=21;MMLQ=28;MQ=64.08;NF=32;NR=4;PP=913;QD=26.3269781263;SC=ATATATGATATATATATGATA;SbPval=0.54;Source=Platypus;TC=37;TCF=33;TCR=4;TR=36;WE=38990965;WS=38990934;set=Platypus	GT:AD:AF:DP	1/1:1,36:0.97:37
chr5	38990957	.	T	TATGAGATATATGATATATATATGATAG	1594.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.39;QD=79.74;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	39021369	rs13177690	G	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	39074296	rs2303808	G	C	29978.77	.	AC=2;AF=1.00;AN=2;DB;DP=1142;set=Intersection	GT:AD:AF:DP	1/1:0,1139:1.00:1139
chr5	39107353	rs404122	T	A	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	39108309	rs377022	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	39108322	rs430630	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	39119723	rs379707	C	A	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	39285139	rs261738	T	A	241.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.59;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	39342308	rs476569	C	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.126;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:96,33:0.26:129
chr5	39364474	rs6864541	A	G	7420.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:117,335:0.74:452
chr5	39375082	rs2686162	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.520;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.846;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:126,36:0.22:162
chr5	39376840	rs61742957	G	A	4736.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:80,207:0.72:287
chr5	39376858	rs61744160	C	A	4634.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:82,202:0.71:284
chr5	39377418	rs2738238	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:53,17:0.24:70
chr5	39383257	rs34507990	T	C	3589.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:59,161:0.73:220
chr5	39390061	rs2855512	C	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	39390121	rs34356831	A	AT	151	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr5	39390369	rs62358402	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr5	39392352	rs62358406	A	C	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,110:0.67:164
chr5	39393239	rs62358409	A	G	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:11,48:0.81:59
chr5	39393521	rs62358410	G	A	5122.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:53,205:0.79:258
chr5	39394408	rs34529705	T	C	1960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.290;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:39,86:0.69:125
chr5	39394493	rs1050903	G	C	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr5	40716153	rs10737963	C	A	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	40728383	.	C	CAAAAAAAA	402.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;MQRankSum=-0.000;QD=50.37;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr5	40763227	rs72747972	A	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr5	40772071	rs837103	C	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	40777792	rs62357560	T	C	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:16,51:0.76:67
chr5	40834864	rs3816959	T	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	40852451	rs188934	C	G	10901.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	40853048	rs16870407	C	T	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.972;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:320,97:0.23:417
chr5	40854682	rs1697938	T	C	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	40860275	rs79220182	A	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.663;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,14:0.70:20
chr5	40928574	rs2443040	A	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	40928792	rs2459467	T	A	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	40954855	rs111748032	G	A	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.092;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr5	40964816	rs7713884	C	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:25,85:0.77:110
chr5	40964852	rs13157656	A	C	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.412;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.201;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:129,43:0.25:172
chr5	40972017	rs11747673	A	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=8.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.842;SOR=0.076;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr5	40972111	rs10805655	C	T	8066.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	40972211	rs74480769	A	G	5343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=0.411;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:104,250:0.71:354
chr5	40972769	rs34641824	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:4,21:0.84:25
chr5	40979790	rs2876849	A	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr5	40980086	rs1450664	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr5	40980102	rs2292727	C	T	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr5	40981375	rs3749519	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.99;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	40981375	.	GTCATT	ATCATC,ATCATT	573	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.11;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=8,33;NR=0,6;PP=140,573;QD=24.1834843578;SC=AATTTATTATGTCATTCCAGG;SbPval=1.0;Source=Platypus;TC=39;TCF=33;TCR=6;TR=8,39;WE=40981388;WS=40981365;set=Platypus	GT:AF:DP	0/1:0.21:39
chr5	40981380	rs7731615	T	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=7.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.647;SOR=2.522;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr5	40981398	rs41271065	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr5	40981689	rs1061429	C	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:109,51:0.32:160
chr5	40998196	rs704040	T	C	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:32,134:0.81:166
chr5	40998235	rs722575	C	T	2746.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:35,126:0.78:161
chr5	40998814	rs2876850	T	A	3269.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:58,143:0.71:201
chr5	40998851	rs2329435	G	A	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=6.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.731;SOR=1.583;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr5	40999900	rs1376175	T	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr5	41000243	rs1376177	G	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr5	41000343	rs1001420	G	A	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:53,102:0.66:155
chr5	41001023	rs2167229	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr5	41004396	rs7712140	G	T	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.64;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	41004406	rs7711722	A	T	2029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=1.278;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:35,87:0.71:122
chr5	41004807	rs2305314	C	T	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,44:0.85:52
chr5	41005527	.	C	CCCTCCT	269	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=0.9999;HP=11;HapScore=4;MGOF=6;MMLQ=16;MQ=60.31;NF=3;NR=0;PP=269;QD=91.6666666667;SC=CCCCCCCCCCCTTGAAGTCTC;SbPval=1.0;Source=Platypus;TC=9;TCF=9;TCR=0;TR=3;WE=41005535;WS=41005506;set=Platypus	GT:AD:AF:DP	1/1:6,3:0.33:9
chr5	41005791	rs10941529	T	C	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:44,127:0.74:171
chr5	41008780	rs2271704	A	G	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	41009899	rs1878290	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr5	41012615	rs6876879	AA	GC	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;JOINED;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr5	41018452	rs10054110	A	T	1394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=2.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.052;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:251,93:0.27:344
chr5	41019229	rs896118	A	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr5	41032998	rs325831	A	G	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	41033112	rs4957367	G	A	11564.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr5	41033931	.	C	CTTATT,CTATCTATT	6374.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=201;set=Intersection	GT:AF:DP	1/2:0.23,0.77:179
chr5	41033992	rs67027762	G	T	2432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=61.56;MQRankSum=-4.873;QD=3.34;ReadPosRankSum=-0.119;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:552,177:0.24:729
chr5	41034181	rs325833	A	G	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	41039000	rs325849	A	G	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	41039430	rs7700901	G	C	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	41042284	rs325854	G	T	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	41045730	rs11297360	CT	C	1766.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:6,97:0.94:103
chr5	41045768	rs325860	G	A	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	41045835	rs6864243	C	G	10878.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr5	41048533	rs13173930	C	T	10505.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:238,490:0.67:728
chr5	41049389	rs325863	T	C	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	41049397	rs325864	C	T	9182.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	41050999	rs325866	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	41057562	rs618334	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr5	41061716	rs865093	A	G	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:68,159:0.70:227
chr5	41061871	rs587412	T	C	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:45,180:0.80:225
chr5	41069734	rs10512757	C	T	1247.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:24,55:0.70:79
chr5	41069852	rs13174484	T	C	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:54,118:0.69:172
chr5	41069952	rs35526955	CCTCT	C	887.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr5	41070840	rs1423391	C	T	8049.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:170,367:0.68:537
chr5	41154150	rs4957374	A	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	41158671	rs10075985	T	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	41158863	rs6866352	G	A	9291.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr5	41199959	rs1801033	G	T	4432.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:77,197:0.72:274
chr5	41382647	rs76547469	A	T	1122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=6.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.149;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:262,82:0.24:344
chr5	41382691	rs545358	C	A	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	41475766	rs318039	C	T	7577.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:130,344:0.73:474
chr5	42700044	rs6179	A	G	9610.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	42713472	rs33972388	TG	T	313.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr5	42718335	rs76362844	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	42719239	rs6180	A	C	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.599;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.117;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:272,90:0.25:362
chr5	42769632	rs12055087	C	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr5	42769647	rs12055266	T	C	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr5	42769844	rs1109882	G	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	42779686	rs11427149	G	GA	1287.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr5	42779736	rs1423656	T	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.183;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=1.289;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr5	42799719	rs4041462	T	TTTA	979.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr5	42800808	rs7579	C	T	4338.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:45,182:0.80:227
chr5	42804983	rs4143864	C	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr5	43066774	rs316408	T	C	4585.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:81,195:0.71:276
chr5	43120098	rs511340	A	G	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:120,53:0.31:173
chr5	43161337	rs903391	A	G	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr5	43245922	rs13176855	C	T	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:61,159:0.72:220
chr5	43292483	rs113830463	C	CTTACTATGAA	1506.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr5	43292908	rs55794239	C	A	255.22	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr5	43294192	rs56257144	C	T	8292.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:144,374:0.72:518
chr5	43294357	rs138459217	TAAGTAA	T	1443.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr5	43296165	rs12520012	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	43297032	rs3733768	C	T	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:47,116:0.71:163
chr5	43297144	rs3733769	A	G	6169.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:103,276:0.73:379
chr5	43298557	rs35239179	C	T	909.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr5	43492265	rs6876588	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	43492978	rs10039298	G	A	7733.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr5	43493592	rs7732089	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	43509348	rs6872851	T	A	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	43509462	rs11415989	T	TC	4121.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	43527673	rs4318791	C	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	43533992	rs11741521	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	43543412	.	C	CAA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.489;QD=4.84;ReadPosRankSum=0.854;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr5	43628550	rs190743367	G	A	332.79	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr5	43645755	.	ATCTC	A	98	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=22;MMLQ=25;MQ=49.18;NF=1;NR=4;PP=98;QD=20.2;SC=CTATCTATCTATCTCTCTCTC;SbPval=0.26;Source=Platypus;TC=17;TCF=1;TCR=16;TR=5;WE=43645766;WS=43645745;set=Platypus	GT:AD:AF:DP	1/0:12,5:0.29:17
chr5	44305309	rs2290070	C	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.459;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:88,32:0.27:120
chr5	44310492	rs6881797	A	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:249,102:0.29:351
chr5	44809162	rs3747479	G	C	2258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DB;DP=775;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=1.427;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:605,168:0.22:773
chr5	50084508	rs10683094	C	CCTT	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	50122645	rs35290606	GT	G	753.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.945;QD=9.79;ReadPosRankSum=-0.019;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:21,56:0.73:77
chr5	52084365	rs10067659	G	C	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	52084441	rs2897351	C	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	52096889	rs1499280	C	A	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	52157374	rs2447867	T	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	52193414	rs377107895	C	CA	7460.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr5	52204943	rs1478441	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	52223350	rs923837	A	G	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	52235802	rs1904165	T	G	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	52235854	rs2447874	T	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	52243059	rs3764924	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	52243361	rs3764923	A	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	52248291	rs1054085	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	52285117	rs28095	T	C	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	52344610	rs1421933	A	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	52354103	rs996765	A	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	52366138	rs2112290	G	A	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	52367666	rs2287872	A	T	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	52386248	rs183912220	T	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	52396439	rs3214755	GA	G	717.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	52404312	rs153602	C	T	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	52405377	rs142643273	C	CCGGGGG	841.06	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:1,19:0.95:20
chr5	52856504	rs2279516	G	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	52856716	rs1532163	A	G	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	52869671	rs10471866	C	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	52899166	rs11414085	C	CTT,CTTT	1388.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.55;ReadPosRankSum=0.404;SOR=0.390;set=HC	GT:AD:AF:DP	1/2:2,15,30:0.32,0.64:47
chr5	52942083	rs31304	A	C	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	52942197	rs31303	A	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr5	52954280	rs1490769	G	A	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	52954514	rs535277	T	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.75;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	52978774	rs2290696	G	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	52978776	rs3085740	GGATT	G	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	53450542	rs157072	T	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	53606295	rs35941	T	C	4565.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	53814052	rs2548615	T	C	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	53814394	rs2548614	T	C	4803.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr5	53815240	rs61739378	G	C	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	54153803	rs10040872	C	T	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	54154209	rs3916738	G	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	54154328	rs4242050	C	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	54252345	rs6877572	T	C	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	54252463	rs6893219	C	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	54253339	rs2897761	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	54253555	rs3815922	A	G	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	54253581	rs3815923	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	54253754	rs6883914	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	54319997	rs3822315	G	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	54320700	rs9292078	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	54403957	rs3104233	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	54404015	rs1875506	C	T	3868.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	54410120	rs3104230	A	C	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr5	54433393	rs336081	G	A	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	54439466	rs1021580	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	54459961	rs381852	A	G	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	54468577	rs70989702	CTTTTTTT	C	921.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.90;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	54468921	rs336115	C	T	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	54516521	rs6879219	G	A	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	54516752	rs3111181	C	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	54517102	rs34101652	C	CT	259.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	54518660	rs7730048	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	54557438	rs400437	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	54563775	rs143912964	TTTA	T	220.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	54693374	rs230802	G	A	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	54693402	rs230801	G	A	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	54706325	rs139320115	T	TTTTAAA	5817.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	54709943	rs230766	G	A	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	54718618	rs230753	G	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	54721619	rs3217330	A	AT	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:4,37:0.90:41
chr5	54721642	rs230750	A	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	54737538	rs2278258	T	C	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	54737791	rs2278257	G	C	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	54771380	rs6870449	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	54804621	rs7707766	C	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	54830295	rs2292280	T	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	54830380	rs11745331	A	G	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	54952688	rs11393180	C	CT	53	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	55034756	.	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=-0.253;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr5	55149407	rs10940487	T	C	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	55155402	rs1009639	C	T	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	55168328	rs71602921	C	CCTT	404.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	55179052	rs10940491	A	T	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	55196023	rs1148039	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	55206444	rs161704	G	A	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	55213023	rs161699	C	T	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	55246001	rs4865999	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	55398217	.	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.712;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr5	55398269	rs318818	G	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	55422681	rs321768	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	55528572	.	AAC	A	44.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:22,5:0.19:27
chr5	56111751	rs28710284	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	56152416	rs832567	C	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	56161787	rs832575	G	A	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	56177443	rs702689	G	A	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	56177743	rs832582	G	A	10233.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr5	56177848	rs5868032	TCAA	T	30223.73	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:0,686:1.00:686
chr5	56178217	rs832583	A	C	8949.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr5	56205643	rs252924	A	G	9143.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.10;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	56205662	rs252923	T	G	7056.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	56206073	rs33321	G	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	56207123	rs2257505	T	A	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	56210923	rs331499	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	56212595	rs832536	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	56221328	rs702679	A	G	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	56224485	rs10684065	T	TTGGC	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	56224714	rs252893	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	56224782	rs150959650	ACT	A	395.74	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.57;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	56224794	.	TCT	ACA	171	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=3;MGOF=44;MMLQ=24;MQ=56.66;NF=3;NR=6;PP=171;QD=24.9408749847;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.49;Source=Platypus;TC=14;TCF=4;TCR=10;TR=9;WE=56224816;WS=56224772;set=Platypus	GT:AD:AF:DP	1/1:5,9:0.64:14
chr5	56224796	rs11747763	T	A	404.78	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	56224808	.	A	T	217	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=2;HapScore=3;MGOF=44;MMLQ=28;MQ=56.45;NF=3;NR=6;PP=217;QD=27.9745791719;SC=ACACACACACACTCTCTCTCT;SbPval=0.35;Source=Platypus;TC=13;TCF=3;TCR=10;TR=9;WE=56224816;WS=56224772;set=Platypus	GT:AD:AF:DP	1/1:4,9:0.69:13
chr5	56224834	rs252891	T	A	365.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	56226410	rs252890	T	C	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	56229288	rs832529	C	T	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	56255367	.	A	AT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=1.052;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.844;QD=1.10;ReadPosRankSum=-2.143;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:86,24:0.22:110
chr5	56526565	rs1544737	G	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	56526783	rs1130203	G	A	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	56527224	rs1862172	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	56527247	rs1862173	T	C	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	56531761	rs13170141	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	56546749	rs34533194	C	CT	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.625;QD=9.68;ReadPosRankSum=-0.711;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr5	56547059	rs6893468	G	A	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	57755013	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.366;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=2.516;QD=1.11;ReadPosRankSum=1.384;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr5	58120753	rs11384049	G	GT	177.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.126;QD=14.81;ReadPosRankSum=0.385;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr5	58270457	rs79105607	TAA	T,TA	1680.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=116;set=Intersection	GT:AF:DP	1/2:0.20,0.71:113
chr5	58271696	rs10051847	C	T	2913.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	58271713	rs10061206	T	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.73;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	58271725	rs372313800	C	CAA	1483.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=43.64;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	58272116	rs3763084	G	A	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	58272361	rs3763083	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	58284208	rs3805557	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	58284283	rs3805556	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	58286625	rs1553114	C	T	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=26.24;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	58286836	rs1973451	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	58287554	rs148212719	AAC	A	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.32;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-1.074;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr5	58289046	rs7737685	G	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	58289334	rs7724713	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	58297881	rs2968014	A	G	5694.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	58386812	rs10075104	G	A	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	58489218	rs1445950	G	A	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	58489384	rs27175	G	A	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	58511501	rs6450512	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	58513701	rs1867725	A	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	58882331	rs11402131	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=2.205;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr5	59443691	rs115935732	C	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	60063576	rs1460958	G	A	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	60199363	rs4647102	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr5	60241142	rs158921	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr5	60241268	rs158920	G	A	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	60369083	rs10471502	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	60369154	rs34070675	TG	T	562.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	60448903	rs33927273	T	TAA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	60628411	rs75429795	G	T	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	60628414	rs111274143	G	T	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	60628618	.	T	TGCC	109	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.19;QD=27.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	60786880	rs7732234	C	T	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	60789972	.	CGG	C	305.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.84;ReadPosRankSum=-1.648;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	60789975	.	A	ACACG	233.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.060;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.37;ReadPosRankSum=-1.242;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr5	60982107	rs36025054	CT	C	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.681;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.759;QD=9.10;ReadPosRankSum=-0.910;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr5	61604204	rs4700006	C	A	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	61604456	rs4441833	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	61733348	rs153857	G	A	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	61745737	rs11329383	CT	C	1378.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:13,89:0.87:102
chr5	61762880	rs35119	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	61772535	rs26635	G	T	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	61785936	rs26644	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	61826663	rs32179	G	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	61857118	.	C	CGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGG	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.72;ReadPosRankSum=-0.935;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr5	62597278	.	G	GTTTTT	736.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.33;QD=36.84;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	63665293	rs56066106	TA	T	143.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.97;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	63665335	rs28615727	G	A	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	63890387	rs4700641	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	63905068	rs889248	A	G	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	64103714	rs1870437	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	64181525	.	G	GGGGTGTGT	1231.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=68.16;QD=30.04;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	64313879	rs2910769	G	A	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.07;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	64313887	rs166475	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.41;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	64748681	rs1309615	T	C	6503.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	64766505	.	CTA	C	54	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=25;MQ=60.0;NF=3;NR=2;PP=54;QD=12.8;SC=CTTAAACTACCTATATATATA;SbPval=0.35;Source=Platypus;TC=21;TCF=16;TCR=5;TR=5;WE=64766527;WS=64766499;set=Platypus	GT:AD:AF:DP	0/1:16,5:0.24:21
chr5	64825102	rs1017576	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	64837105	rs4700085	C	T	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	64838584	rs6891597	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	64838758	rs6891955	G	C	193.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	64847543	rs6893491	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	64847680	rs2305117	A	G	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	64848442	rs3213938	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	64857424	rs71720962	AAC	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.295;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr5	64887472	.	TTA	T	220.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr5	64942852	.	CT	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.031;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr5	65073224	rs34979	C	A	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	65288791	rs27132	A	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	65316997	.	TA	T	43	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=4;HapScore=2;MGOF=0;MMLQ=28;MQ=65.19;NF=2;NR=0;PP=43;QD=34.5;SC=ATCTGACTTTTAAAATTTTTT;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=65317005;WS=65316992;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	65317181	rs706679	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	65346599	rs56216143	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	65364692	rs1160930	CCT	C	1798.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	65455258	rs34136434	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.890;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.604;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr5	66084378	rs2252849	A	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	66084676	rs183763	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	66166427	rs1160971	CAT	C	4269.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	66226652	rs80243092	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	66226741	rs4099838	T	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	66226798	rs4090993	T	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	66282428	.	T	TTATA,TTA	199	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.4966,0.5034;HP=2;HapScore=3;MGOF=10;MMLQ=23;MQ=60.0;NF=1,1;NR=14,14;PP=10,199;QD=1.13333333333;SC=ATGTATGAATTTATATATATA;SbPval=0.69;Source=Platypus;TC=26;TCF=2;TCR=24;TR=15,15;WE=66282436;WS=66282418;set=Platypus	GT:AF:DP	0/1:0.58:26
chr5	66282447	rs59915268	T	TA	278.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=8.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.544;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr5	66282448	rs183897699	T	A,TA	576.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=9.542;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.04;ReadPosRankSum=0.386;SOR=4.284;set=HC	GT:AD:AF:DP	1/2:1,6,11:0.33,0.61:18
chr5	66391516	.	C	CT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.38;ReadPosRankSum=1.059;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr5	66406143	rs2545394	G	A	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	66414489	.	C	CT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.450;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr5	66416764	rs2254790	C	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	66429329	rs2371882	G	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	66459878	rs1705399	G	C	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	66460390	rs17221458	G	A	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	66480004	rs1697144	T	C	7120.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:2,277:0.99:279
chr5	66492215	rs5744464	G	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	67569746	rs171649	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr5	67575548	rs61749601	T	C	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	67584512	.	AT	A	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=0.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.314;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:114,30:0.21:144
chr5	68390203	rs337260	C	G	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	68390284	rs337259	C	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.646;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	68396764	rs3833634	T	TG	133.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	68409094	rs164393	A	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	68411010	rs240809	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.94;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	68412048	rs34215592	A	AT	2135.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	68413042	rs3840519	CT	C	1639.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:6,81:0.93:87
chr5	68415932	.	G	A	21	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=0.9998;HP=1;HapScore=2;MGOF=26;MMLQ=15;MQ=62.13;NF=2;NR=2;PP=21;QD=13.9428031368;SC=CTGTCCACCAGTGAAAAAAGT;SbPval=0.68;Source=Platypus;TC=4;TCF=2;TCR=2;TR=4;WE=68415940;WS=68415922;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	68417643	rs164578	C	T	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	68417755	rs164577	A	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	68419054	rs164572	A	T	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	68463606	rs163442	G	A	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	68464234	rs163443	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	68470559	rs426392	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	68470599	rs3087334	C	CATTA	2154.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	68485366	rs648489	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	68491714	rs11283275	T	TAGTCAAG	1163.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	68513572	rs2242351	C	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	68525027	rs2932777	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	68531253	rs2972388	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	68546706	rs2972367	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	68550348	.	C	CAA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.57;ReadPosRankSum=-1.569;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr5	68550631	rs2054975	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	68550635	rs2054976	A	G	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	68551507	rs2291519	T	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	68551653	.	CT	C	55.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.97;ReadPosRankSum=0.319;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr5	68558282	rs34449359	G	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	68572668	rs4077460	C	T	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	68596068	rs28704183	C	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	68602746	rs6881767	G	C	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	68609885	rs11749723	G	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	68610009	rs28462372	A	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	68688608	rs299080	T	C	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	68692375	rs34097088	T	TA	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=0.392;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr5	68695940	rs1045051	T	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=24.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	68696035	rs142095225	G	GTTTATTTA	575.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	68706252	rs10940223	G	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	68706438	rs6871685	G	A	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	68715310	rs1185246	C	T	13329.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr5	68862361	rs375045774	TG	T	824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=7.641;MLEAC=1;MLEAF=0.500;MQ=43.61;MQRankSum=-5.981;QD=11.78;ReadPosRankSum=1.930;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:18,52:0.74:70
chr5	68862365	rs201465285	G	T	1361.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=4.008;MLEAC=2;MLEAF=1.000;MQ=43.35;MQRankSum=-2.649;QD=19.74;ReadPosRankSum=1.062;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:6,63:0.91:69
chr5	69325573	.	CT	C	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DP=310;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-12.587;QD=1.26;ReadPosRankSum=0.497;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:217,70:0.24:287
chr5	69367063	rs199712040	G	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.03;MQRankSum=0.674;QD=7.95;ReadPosRankSum=-1.645;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	70200973	rs189447511	C	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.41;QD=23.87;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	70307464	rs4976210	T	C	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	70308251	rs28409706	C	T	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	70751818	rs3748043	T	G	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	70763088	rs7442961	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	70786726	rs35267960	G	GAC	763.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	70797500	rs11441119	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.31;ReadPosRankSum=1.201;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr5	70800538	rs3761967	G	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	70805272	rs36098798	GC	G	279.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	70806457	rs715748	G	A	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	70806649	rs1961760	T	A	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	70806711	rs715747	C	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	70806958	rs6886336	G	A	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	70807991	rs418738	G	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	70809169	rs1698063	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	70811821	rs279322	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	70834703	rs276591	A	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	70834833	rs276590	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	70837295	rs6453014	A	C	1268.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.681;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.064;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.88;ReadPosRankSum=-0.640;SOR=0.617;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr5	70840233	rs182190	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	70840433	rs279290	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	70849021	rs469039	G	T	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	70852611	rs467620	G	A	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	70860493	rs277944	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	70862059	rs185733	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	70922616	rs12516456	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	70927856	rs277980	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	70928083	rs277981	C	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	70931883	rs1553314	G	A	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	70932002	rs7444180	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	70932170	rs7444232	G	T	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	70945075	rs10064079	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr5	70948385	rs6888301	T	G	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	70948654	rs2242372	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	70952506	rs7443786	A	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	71403273	rs3112401	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	71403306	rs3112402	T	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	71411718	rs1531312	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	71412373	rs1466343	A	G	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	71489082	rs34485863	G	GT	2856.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	71490962	rs1866374	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	71495041	rs3805452	T	C	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr5	71522125	rs9293821	A	T	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	71634712	rs10942271	A	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	71743024	rs10043295	G	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	72144209	rs34652	C	T	9085.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr5	72147269	rs34655	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	72151858	rs34660	T	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	72174432	rs266435	C	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	72174553	rs266436	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	72183055	.	CCTAAGTCCAGTTTGAATTATGTAAGTTGGCTTCTTACTACTATTAGGTACTAATAAGGCTAGGCTACTTTAAGG	C	834.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=41.74;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	72184098	rs17606	C	T	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	72252034	rs140511986	G	GGGC	4059.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:5,97:0.95:102
chr5	72285202	rs376748959	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	72333156	.	T	TCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATC	52.92	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	72347090	rs7712673	A	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	72347223	rs7712838	A	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	72350290	rs62362200	A	T	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	72351905	rs57213367	A	G	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	72370745	rs7732230	C	T	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	72378703	rs11313621	AT	A	495.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.472;QD=14.16;ReadPosRankSum=0.685;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr5	72419410	rs7731777	A	G	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	72419456	rs637450	C	G	5417.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	72419617	rs636926	C	A	6027.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr5	72742882	rs2972191	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	72743299	.	G	GGC	1132.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	72798502	rs200370518	GTT	G	1443.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:5,55:0.92:60
chr5	72800408	rs703882	G	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	72800863	rs59856963	C	CT	305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.201;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:12,21:0.64:33
chr5	72850282	rs343104	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	72851535	rs819584	A	T	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	72853314	rs1640	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	72861459	rs168222	G	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	72865307	rs347234	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	72868546	rs1220634	A	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	72872766	rs1220622	C	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	72874907	rs343122	A	C	3883.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr5	72980837	rs16870681	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	72980869	rs10755296	G	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	73045506	rs17552626	T	C	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	73069581	rs4704097	A	G	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	73072354	rs7714670	T	C	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	73076457	rs11949860	G	A	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=26.36;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	73076474	rs35525194	GT	G	1308.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.344;QD=17.00;ReadPosRankSum=0.147;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:6,71:0.92:77
chr5	73076511	rs6453022	C	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	73090089	rs12653477	T	G	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	73090165	rs10683146	A	AGTT	3127.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:2,120:0.98:122
chr5	73090261	rs7716253	T	C	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.59;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	73091126	rs2973549	T	A	1394.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	73091228	rs2973548	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	73142380	rs13161779	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	73144845	rs2973568	A	G	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	73160730	rs1014550	G	A	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	73163861	rs2931422	C	T	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	73178550	rs2973528	T	G	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	73179672	rs3749645	C	T	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,184:0.99:186
chr5	73190119	rs2973530	T	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	73190174	rs34729826	A	G	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	73197185	rs434065	A	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	73197200	rs384927	G	A	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	73930442	rs300240	C	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	73930751	rs300239	C	T	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	73931246	rs442425	T	C	14072.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr5	73932315	rs9176	T	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	73981270	rs820878	T	C	20561.77	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:0,781:1.00:781
chr5	73992406	rs1696979	T	G	62.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	73992609	rs1665894	G	A	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	74028752	rs10572369	GACACAC	G,GAC	2637.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=5.315;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.225;QD=34.26;SOR=1.833;set=HC	GT:AD:AF:DP	1/2:2,33,42:0.43,0.55:77
chr5	74097344	rs149496756	GCA	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.930;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:141,17:0.11:158
chr5	74364300	rs10942729	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	74376309	rs4447963	A	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	74376571	rs4345300	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	74387317	rs10462512	C	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	74400516	rs56174528	G	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	74433839	rs5868765	G	GA	421.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.183;SOR=0.468;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr5	74442410	rs1422699	G	A	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	74442920	rs6888707	A	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	74443132	rs1422698	C	T	5523.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	74450278	rs7704104	T	A	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	74484275	rs10050948	C	T	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	74491715	rs10563854	TTCA	T	9121.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	74506658	rs2219745	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	74518317	rs57235500	T	TA	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.65;ReadPosRankSum=-0.230;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr5	74526489	rs11295265	GT	G	5398.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	74988369	rs888789	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	75427518	rs1423099	C	T	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	75427935	rs10070440	G	A	4590.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	75470086	rs10805899	T	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	75648765	.	CTT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.701;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr5	75648938	rs142457579	TA	T	657.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-0.521;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:12,42:0.78:54
chr5	75699251	rs112531987	T	C	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	75699599	rs62363210	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	75923294	rs2431352	T	G	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr5	75923307	rs2909888	A	G	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	75924469	rs3822541	G	T	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	75927606	rs3797409	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.28;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	75927635	rs3797410	G	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.58;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	75927954	rs3797412	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	75960818	rs11449450	T	TA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	75960825	rs253092	G	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	75960865	rs253093	T	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	75970219	rs2287933	A	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	75996837	rs10942789	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	75997063	rs2307124	A	G	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.49;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	75997069	rs2307123	C	T	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	75998488	rs3816909	T	G	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	76003254	rs463188	A	T	211.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	76128521	rs616235	G	A	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	76129053	rs631465	T	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	76171252	rs1320308	A	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.034;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	76249536	rs1715771	C	G	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	76259350	rs7728378	T	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	76607627	rs11413850	C	CT	392.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	76607738	rs113995403	T	C	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	76607930	rs11395504	C	CT	133.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=-0.500;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr5	76621612	rs4133658	A	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	76645529	rs2306343	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	76696334	rs3733952	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	76704849	rs186753	T	C	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	76708987	rs335614	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	76709249	rs335615	A	T	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	76709268	rs335616	A	G	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	76714380	rs2242159	C	T	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	76785406	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=4.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.110;SOR=1.507;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr5	76916335	rs5868876	G	GC	4547.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	76926578	rs13357072	T	C	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	76926651	rs62362480	A	C	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	77298619	rs11552314	A	T	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	77412011	rs42360	A	G	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	77425028	rs6453373	A	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	77461308	rs138987182	AGTT	A	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	77473165	rs4532349	A	G	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	77473419	rs10428660	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr5	77745853	rs66744502	C	CA	2161.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	77755035	rs6453391	T	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	77784738	rs2241566	A	G	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	78181477	rs1065757	C	T	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr5	78181577	rs72762973	T	C	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	78265041	rs3733895	A	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	78340062	rs248384	T	C	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	78340257	rs248385	C	G	7920.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	78340286	rs532964	A	G	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	78340411	rs531982	T	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	78351636	rs2253262	A	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	78373431	rs682985	C	T	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	78573790	rs13182512	A	T	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	78573970	rs16876598	T	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	78573993	.	TAA	T	518.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=4.031;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.463;QD=22.55;ReadPosRankSum=-0.711;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr5	78586914	rs10043008	G	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	78596044	rs10514159	T	C	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	79024734	rs1541813	A	G	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	79028472	rs4704585	C	T	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	79028726	rs13158477	A	G	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	79029594	rs1019762	T	C	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr5	79030045	rs4639193	A	G	6998.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	79039828	rs13155412	T	C	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	79040977	rs35310955	C	CA	170.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=-0.385;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr5	79058817	rs259128	C	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	79086649	rs259096	G	A	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	79095119	rs3749682	T	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	79281658	rs7734858	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	79282544	rs2291524	C	T	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	79361265	rs1866389	G	C	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	79366080	rs256439	T	C	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	79366249	rs256438	T	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	79368016	rs256437	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	79375175	.	T	TA	28	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=8;HapScore=2;MGOF=0;MMLQ=28;MQ=60.51;NF=0;NR=3;PP=28;QD=15.0;SC=TTAGTTAATCTAAAAAAAATT;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=3;WE=79375183;WS=79375165;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chr5	79443169	rs7712447	A	G	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	79473059	rs11429938	C	CT	1500.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	79499076	rs35653111	C	CATAT	318.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=45.53;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	79551867	rs1966470	A	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	79595404	rs33987570	CA	C	251.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	79595851	rs75500114	G	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	79731608	rs2544599	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	79733079	rs2544600	T	C	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	79734297	rs259028	T	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	79734409	rs259029	G	A	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	79735858	rs168939	A	G	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	79739685	rs259033	G	A	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	79741018	rs259034	T	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	79741304	rs34312342	CT	C	159.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.230;QD=10.65;ReadPosRankSum=-1.139;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr5	79743821	rs2251759	T	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	79745469	rs249038	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	79747291	rs249039	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	79751332	rs249040	A	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	79773028	rs166062	T	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	79815658	rs369998	T	C	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	79817898	rs2431224	A	G	6271.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr5	79950781	rs1650697	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	79974646	rs836807	T	C	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	80021168	rs32951	A	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	80021193	rs245016	C	T	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.95;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	80021445	rs32952	A	C	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	80024608	rs151810	A	G	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	80071709	.	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.889;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr5	80149981	rs184967	A	G	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	80160596	rs3991216	AAATG	A	2875.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=1.999;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	80168937	rs26279	G	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	80338594	rs17410395	T	C	171.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	80366482	rs26419	G	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	80376142	rs27650	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	80388823	rs34991019	T	TA	921.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	80390318	rs425847	G	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	80409229	rs26422	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	80552960	rs370762634	AGT	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.14;ReadPosRankSum=-0.173;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr5	80733146	rs184472015	T	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	81574182	rs6880209	C	T	9497.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr5	81601142	.	C	CA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.372;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr5	82135819	rs139917914	T	TA	721.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.09;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	82135830	.	C	CA	817.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.20;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	82136064	rs113309601	T	TTCTTC	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	82353083	rs7724935	C	T	5177.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	82353087	rs7707143	T	C	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	82357802	.	T	C	168.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr5	82360783	rs2306336	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	82940273	rs2242128	C	G	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	82940510	rs1457081	T	C	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	83259225	rs11746605	G	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	83433000	.	C	CAT	2969	.	AC=2;AF=1.00;AN=2;BRF=0.13;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=22;MQ=59.73;NF=20;NR=16;PP=2969;QD=20;SC=TGTGTGTATACATACACACAC;SbPval=0.25;Source=Platypus;TC=103;TCF=66;TCR=37;TR=36;WE=83433014;WS=83432990;set=Platypus	GT:AD:AF:DP	1/1:67,36:0.35:103
chr5	83433002	.	TAC	T	742.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.240;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr5	83433004	rs350490	C	T	1713.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.134;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.312;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:52,77:0.60:129
chr5	83433006	rs200843007	C	T	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.142;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:112,32:0.22:144
chr5	85582712	rs2964837	T	C	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.60;QD=26.32;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	85586579	rs10066606	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	86564995	rs3734000	T	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	86633973	rs3752862	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	86667856	rs35014912	G	GA	511.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.449;QD=14.62;ReadPosRankSum=-0.130;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr5	86695274	rs2230641	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	86697387	rs3093816	A	G	77.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	87497977	rs358289	C	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	87498027	rs3099436	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	87498069	rs3098676	C	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	87498128	rs3099435	T	A	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	87498849	rs3097146	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	87502325	rs357515	G	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	87503087	rs34534189	GACT	G	801.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	87963272	rs5869431	G	GA	2475.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	87968912	.	CA	C	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.483;QD=1.44;ReadPosRankSum=-0.771;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:90,35:0.28:125
chr5	88018388	.	G	GA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.158;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:69,22:0.24:91
chr5	88025845	rs34297769	CA	C	160.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.612;QD=11.45;ReadPosRankSum=0.925;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr5	88416255	rs139453030	A	AAC	752.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr5	88416354	rs9293511	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	89312582	rs17596494	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	89703641	rs4873	C	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	89705752	rs11315430	GC	G	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	89769728	rs2162986	T	C	7378.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	89781594	rs2115500	C	T	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	89807711	rs6897910	G	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	89814604	rs1305059	G	GTGACC	1536.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	89815312	rs34548009	G	GA	920.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	89816299	rs171790	C	A	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	89816309	rs35118083	A	AT	5252.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	89816383	rs13182165	G	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	89820984	rs10069050	T	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	89825210	rs603870	G	A	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	89909972	.	GAA	G	124.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.48;ReadPosRankSum=-1.150;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr5	90059080	.	G	GT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=-0.919;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:61,17:0.22:78
chr5	90107108	rs2438374	A	G	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	90119324	rs2438378	G	A	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	90151589	rs2247870	G	A	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	90445829	rs35858094	T	TTC	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=61.21;MQRankSum=0.000;QD=6.34;ReadPosRankSum=1.353;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:20,23:0.53:43
chr5	90449031	rs7726023	T	C	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.14;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	90669400	rs6452952	A	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	90671274	rs1363839	A	T	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	93386302	rs373802932	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.18;ReadPosRankSum=-0.169;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr5	93388777	rs148770534	T	TATAG	895.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.95;ReadPosRankSum=-1.915;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:2,21:0.91:23
chr5	93410244	rs7732578	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	93731985	rs308207	A	G	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	93732334	rs308206	C	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	93752874	rs29911	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	93808245	rs144673345	T	C	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	93964694	rs11741678	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	93985307	rs2305391	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	93999431	rs74718913	A	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	94006023	rs7709494	T	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	94014800	rs1549179	T	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	94043353	rs7735924	G	T	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	94044422	rs2290300	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	94046387	rs306573	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	94050403	rs13456	T	C	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	94114594	rs255372	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	94259653	rs293050	G	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	94289131	rs293045	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	94353024	rs12658252	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr5	94404660	rs11357469	CT	C	71.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=11.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	94619545	rs5869672	G	GC	2168.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	94741741	rs253714	C	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	94741837	rs253715	A	G	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	94741973	rs253716	T	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	94759802	rs17084711	G	A	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	94772540	rs6878669	C	T	6515.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.75;ReadPosRankSum=2.091;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:2,251:0.99:253
chr5	94786142	rs7709828	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	94800222	rs9885158	A	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	94800503	rs9885192	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	94800547	rs9885310	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	94805685	rs201030482	C	CTT	654.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=0.000;QD=24.25;ReadPosRankSum=0.064;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr5	94820639	rs6891486	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	94826655	rs2303650	C	A	7108.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	94833109	rs10055673	C	T	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	94861118	rs17084873	G	C	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	94877411	rs76992497	A	C	492.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	94879134	rs2303649	C	T	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	94901655	rs80012555	C	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	94927426	rs58373522	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	94939193	rs17084927	A	G	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	95067987	rs12656671	G	A	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	95084131	rs34896	G	A	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	95091194	rs34898	C	T	12946.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	95091201	rs34899	A	G	7713.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.759;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:2,303:0.99:305
chr5	95194445	rs57525142	G	A	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	95194571	rs13168014	T	C	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	95224700	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=4.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.330;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr5	95233795	rs61457748	GA	G	64.94	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr5	95414786	rs5869706	T	TTAAAA	1968.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	95728898	rs6235	C	G	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	95728974	rs6234	G	C	5414.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	95747963	rs35364611	TCTC	T	3386.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	95761432	rs11310306	TA	T	992.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.207;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=0.089;SOR=0.538;set=HC	GT:AD:AF:DP	1/1:13,72:0.85:85
chr5	95765079	rs79000322	T	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	95767920	rs3792747	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	96066652	rs151904	C	T	3559.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	96071780	rs13183352	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	96076487	rs7724759	G	A	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	96078309	rs26503	G	A	3168.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	96079402	rs26506	C	T	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	96086334	rs754615	G	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	96089658	rs27583	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	96093391	.	G	GT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=8.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.773;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr5	96101031	rs137862146	TAA	T	1038.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.98;ReadPosRankSum=1.143;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:6,46:0.88:52
chr5	96101066	rs11399505	T	TA	2258.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	96101944	rs27524	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	96101959	rs27525	C	T	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	96107202	rs27689	G	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	96116031	rs71978924	AACTC	A	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	96116112	rs34765952	A	AT	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.826;QD=9.97;ReadPosRankSum=-0.138;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:19,52:0.73:71
chr5	96117300	rs27043	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	96118852	rs27044	G	C	4155.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	96119579	rs70981840	A	ACT	738.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	96121370	rs11386832	T	TA	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	96121524	rs469783	C	T	8008.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	96121715	rs469758	C	T	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	96122260	rs30379	T	G	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	96122281	rs30380	A	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	96124330	rs30187	T	C	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	96124447	rs30186	G	C	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr5	96125910	rs26510	C	T	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	96126197	rs27710	A	G	7728.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr5	96126308	rs27529	A	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	96127833	rs3213809	G	A	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	96127905	rs27640	T	C	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	96128962	rs77311599	C	T	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	96129512	rs27434	A	G	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	96136525	rs27528	T	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	96150110	rs80041669	T	C	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	96222627	rs13189819	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	96230858	rs3832368	T	TA	247.74	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr5	96230883	rs371137761	A	ATT	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	96231000	rs2549782	G	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.41;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	96232142	rs2548538	T	A	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	96232222	rs2548537	G	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	96232250	rs34701361	G	GAAA	2887.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	96232286	rs2549785	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	96232345	rs56321917	CAT	C	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	96232402	rs2548536	T	A	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	96232669	.	T	TAAG	97.37	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.46;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	96232670	.	T	TCATATGTTGGGTAACGA	97.37	.	AC=2;AF=1.00;ALERT;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.46;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	96235896	rs2248374	A	G	3587.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	96237114	rs187265	C	G	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	96237326	rs2287988	G	A	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	96237413	rs171647	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	96239294	rs1423568	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	96244549	rs2549794	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	96244585	rs2548527	A	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	96244638	rs2549795	A	G	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	96245343	rs2549796	C	T	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	96245439	rs1056893	C	T	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	96245518	rs2549797	A	G	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	96249115	rs2255546	C	T	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	96271809	.	G	T	248.77	.	AC=2;AF=1.00;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	96329857	rs27304	G	T	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	96332085	rs3836862	TC	T	6805.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	96339102	rs3214461	AC	A	385.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=1.777;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:5,26:0.84:31
chr5	96339273	rs27613	T	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	96341750	rs3839297	TTA	TTATA,T	87.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=5;set=Intersection	GT:AF:DP	0/1:0.60:5
chr5	96342077	rs3835054	TA	T	178.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.641;QD=9.92;ReadPosRankSum=-0.135;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr5	96363407	rs27300	C	T	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	96364063	rs27712	C	T	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	96430593	rs147242178	C	T	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	96507204	rs2432090	T	C	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	96512865	rs2548319	T	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	96512871	rs2544772	T	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	98109838	rs2662263	A	C	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	98109985	rs2545730	G	A	212.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	98205326	rs370965286	GCA	G	107.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	101575091	rs62370437	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	101592742	rs174414	T	C	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	101592809	rs261101	T	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	101593486	rs398228	CT	AG	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	101593522	rs11746537	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	101595792	rs113859065	GTA	G	1099.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	101595885	rs148885155	T	TGA	2746.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:3,77:0.96:80
chr5	101596032	rs202209380	AAAAT	A	172.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	101606518	rs33922930	G	GA	1011.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr5	101726648	rs6874612	C	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	101726851	rs1452065	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	101795490	rs11746217	A	G	4361.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=36.05;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	101795499	rs148394431	G	GA	1388.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.452;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.658;QD=17.58;ReadPosRankSum=2.730;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:6,73:0.92:79
chr5	101811346	rs4703232	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	101816104	rs6884141	G	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	102249546	rs6876278	A	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	102282472	rs3776873	T	A	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	102295504	rs2195272	G	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	102310166	rs3733939	G	A	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	102340782	rs3834262	GATTA	G	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	102345546	rs2230457	A	C	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	102355716	rs3215069	CT	C	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	102360747	rs17296280	A	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	102423576	rs468844	A	G	328.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	102423579	rs469094	A	C	328.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	102433409	rs34813	G	A	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	102440383	rs17851288	C	T	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	102456254	rs26523	C	T	2817.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	102456304	rs26524	A	G	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	102484797	rs138096296	TAC	T	111.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr5	102487148	.	T	G	334.77	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	102488571	rs27896	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	102489511	rs34767	T	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	102494751	rs257292	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	102512447	rs152134	C	G	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	102512570	rs11408825	C	CA	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	102520400	rs26821	A	C	4127.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,162:0.99:163
chr5	102537200	rs154290	T	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	102537379	rs28025	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	102886512	rs58006145	T	C	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	102890560	rs11373550	G	GA	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr5	102891695	rs10045774	A	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	102894447	rs3734087	A	G	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	103978969	rs33818	T	C	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	104043349	.	TGAG	T	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.446;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr5	104434339	.	G	GGAAAGAAA	673.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	106723326	rs78458639	A	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	107006446	rs35553	T	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	107684324	rs1862195	C	T	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	108133758	rs11406674	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.820;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr5	108168451	rs376837075	CT	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.803;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=6.651;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.839;QD=1.57;ReadPosRankSum=-1.217;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr5	108203451	rs67418706	GT	G	1733.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:36,116:0.76:152
chr5	108386985	rs2416195	A	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	108387169	rs115715653	G	A	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	108387229	rs113844089	AG	A	5920.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	108436014	rs3816024	A	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	108516629	rs6594349	A	G	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	108679870	rs142828555	T	TTTAA	1942.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.57;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	108691738	rs2431253	A	T	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	108713970	rs10042721	C	T	5485.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	109027557	rs79165562	C	T	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	109027626	rs75274984	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	109034215	rs10652843	G	GGT	3291.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	109049145	rs138299919	T	TA	371.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.566;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=-0.092;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr5	109049178	rs17162097	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	109049507	rs56350644	C	CT	908.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.873;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.572;QD=13.77;ReadPosRankSum=0.844;SOR=0.573;set=HC	GT:AD:AF:DP	1/1:10,56:0.85:66
chr5	109110591	rs61735369	G	A	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr5	109124824	rs73785030	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	109125072	rs2112212	C	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	109125416	rs1019446	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	109140095	rs55823525	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	110077803	rs368429622	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	110679657	rs446176	C	G	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	110710360	rs306067	G	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	110710699	rs5870446	A	AG	1967.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	110712491	rs306129	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	110730557	rs523389	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	110784822	rs2116824	A	G	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	110819753	rs25925	G	C	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	110840744	rs11454826	G	GA	1460.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.824;QD=14.18;ReadPosRankSum=0.775;SOR=1.128;set=HC	GT:AD:AF:DP	1/1:15,88:0.85:103
chr5	111013610	rs149695272	C	CA	1220.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	111013695	rs10478063	G	T	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	111013858	rs26042	G	A	2369.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	111479750	rs62372418	T	C	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	111497358	rs3816657	T	G	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	111500816	.	C	CTAAAA	1927	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=2;NR=30;PP=1927;QD=61.5625;SC=CATTTCTTCTCTAAAATATAT;SbPval=0.49;Source=Platypus;TC=39;TCF=2;TCR=37;TR=32;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/1:7,32:0.82:39
chr5	111500822	.	T	TAAA	2770.73	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=1.573;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	111500824	.	T	C	897	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=10;NR=31;PP=897;QD=22.7261271353;SC=CTCTAAAATATATTTGAAAAA;SbPval=0.6;Source=Platypus;TC=43;TCF=11;TCR=32;TR=41;WE=111500832;WS=111500806;set=Platypus	GT:AD:AF:DP	1/1:2,41:0.95:43
chr5	111500824	rs33929905	T	TAC	2770.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	111504479	rs7703522	C	T	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	111505885	rs1560052	T	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	111506069	rs10040749	G	A	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	111519740	rs1560058	T	C	3729.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	111530284	rs7719346	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	111540950	rs12658467	C	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	111540968	rs373807306	T	TC	1036.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	111545670	rs890757	C	G	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	111595745	rs28620667	C	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	111755619	rs61730663	G	A	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	112119462	rs77929348	CAAA	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-1.434;QD=8.73;ReadPosRankSum=0.534;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr5	112119593	rs111933129	A	G	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	112162854	rs2229992	T	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	112164561	rs351771	G	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	112175770	rs41115	G	A	6390.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	112176325	rs42427	G	A	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	112176559	rs866006	T	G	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	112176756	rs459552	T	A	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	112177171	rs465899	G	A	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	112196949	rs460137	A	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	112197986	rs431287	A	T	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	112198015	rs372492	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	112198071	rs112093457	AAGG	A	2590.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	112200098	rs351767	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	112257242	rs33570	G	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	112312676	rs33555	T	C	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr5	112328377	rs3733969	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	112343544	rs2052484	G	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	112346431	rs58980024	TG	T	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=-0.383;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr5	112349070	rs9326869	T	C	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	112364945	rs1363333	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	112379083	rs4627978	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	112379095	rs4277906	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	112379289	rs2227948	G	A	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	112379434	rs4705755	T	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	112384802	rs6594664	G	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	112385004	rs7726296	CA	GC	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	112385035	rs7708603	T	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	112389747	rs4705536	C	G	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	112399791	rs2227947	G	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	112406718	rs4705771	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	112439941	rs6594681	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	112479004	rs2227949	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	112629887	rs485210	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	112676191	rs10900684	A	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	112824039	rs348942	T	C	6730.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr5	112849801	rs1862315	A	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	112849823	rs2416281	C	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	112851109	rs1820057	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	112851121	rs1035408	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	112853189	rs1833678	T	C	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	112862508	.	GAAAA	G	214.80	.	AC=2;AF=1.00;AN=2;DP=10;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	112868693	rs6594732	C	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr5	112876889	.	ATTT	A,AT	864.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.348;QD=24.02;ReadPosRankSum=1.071;SOR=1.127;set=HC	GT:AD:AF:DP	1/2:3,13,20:0.36,0.56:36
chr5	112884197	rs4444963	C	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	112884380	rs6889574	G	A	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	112884594	rs6889501	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	112884728	rs4639215	G	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	112884752	rs6594734	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	112888854	.	C	CTTT	229.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	112888875	rs72805421	C	T	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	112888882	rs72805422	A	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.61;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	112889065	rs60871281	G	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	112889374	rs10071816	G	A	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	112889566	rs34947411	ATCT	A	1317.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	112889608	rs10079758	T	A	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	112889821	rs140119986	CCTCTA	C	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	112892000	rs2162842	G	A	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	112899250	rs6886199	G	A	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	112899300	rs6867181	TG	AA	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	112899702	rs6886628	A	G	7879.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr5	112899876	rs11241214	G	A	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	112901494	rs3763139	G	C	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	112917278	rs11748794	T	G	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr5	112919941	rs2288449	G	A	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	112926982	rs2303717	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	112927888	.	A	AT	1280.73	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.59;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	112927900	rs73242858	A	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	112928865	rs3763138	G	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	112929013	rs1132528	T	A	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	113698544	rs40179	G	C	9505.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr5	113698631	rs111266015	T	TGCC	4491.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:10,175:0.95:185
chr5	113822197	rs72801872	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	113822205	rs12719181	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	113829121	rs1841251	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	114462355	rs2974617	C	T	6042.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	114462589	rs2921623	A	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	114462630	rs2974528	T	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	114515588	rs2278695	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	114557727	rs265428	C	T	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	114603455	rs17459137	T	A	620.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	114611356	rs267295	A	C	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	114612637	rs372585190	GATTAT	G	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	114620614	rs189371209	A	G	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	114632423	rs3111171	C	T	129.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	114860161	rs73253005	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	115167595	rs3215095	CT	C	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	115338704	rs1346479	T	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	115338732	rs1560080	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	115339086	rs6594929	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	115341611	rs10078748	G	T	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr5	115341638	rs10078759	G	C	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	115351150	rs10214076	T	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	115351498	rs17485148	C	T	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	115357676	rs1508876	T	A	204.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	115387421	rs1541801	A	G	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	115389626	rs954763	A	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	115389946	rs2662472	A	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.31;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	115394357	rs6860908	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	115394396	rs6880121	C	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	115394626	rs6880759	G	A	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	115426746	rs10065554	T	C	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	115428334	rs1129494	G	T	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	115428439	rs6894046	T	A	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	115469773	rs1129496	C	T	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr5	115628120	rs11337562	CT	C	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.574;QD=1.31;ReadPosRankSum=0.296;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr5	115783553	rs17139805	C	T	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	115784843	rs1968362	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	115803578	rs10551961	AGTG	A	7401.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=0.304;QD=32.61;ReadPosRankSum=0.462;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:2,225:0.99:227
chr5	115813726	rs34966	A	G	8139.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr5	115827356	rs154599	C	T	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	115827407	rs154600	G	A	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	115831305	rs32973	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	115831873	rs32974	C	T	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	115832056	rs41099	G	A	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	117329051	rs5870786	T	TAGACAC	5102.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	117896563	rs5870817	T	TATAG	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	117896623	rs5870820	GTGTA	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	117896669	rs5870821	AT	A	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	117938634	rs147234228	CACAT	C	304.27	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr5	117938684	rs62370420	C	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	118456977	rs10056088	T	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.64;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	118484804	rs7734532	G	A	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	118513246	rs34139050	C	CTG	1336.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	118532034	rs6595178	A	C	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	118532157	rs199503677	A	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	118542406	rs3797335	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	118556350	rs2271059	C	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	118574562	rs11241496	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	118690998	rs3813309	A	G	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	118691693	rs3797339	C	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	118691929	rs6595185	A	T	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	118727224	rs3733855	A	G	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	118728495	.	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.871;QD=0.71;ReadPosRankSum=-2.007;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr5	118825051	rs12653702	G	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	118845139	rs32664	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	118845245	rs68024523	T	A	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	118860938	rs11539471	T	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	118861713	rs11205	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	118862971	rs2636961	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	118877410	rs147689714	C	CT	34.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	118965623	rs2434599	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	120021819	rs1158194	G	A	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	121330223	rs6595336	C	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	121488203	rs2560306	G	A	3637.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	121488635	rs3217313	AT	A	10151.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr5	121515195	rs11957829	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	121518378	rs2303655	T	C	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	121726714	rs1946649	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	121779262	rs2737094	C	T	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.246;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	121779438	rs2737095	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	121785398	rs2737092	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	122152521	rs184653767	G	C	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.36;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	122335807	rs45551539	G	A	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	122359502	.	A	AACACACACACAC	746.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=49.78;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	122359640	rs451195	T	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	122359839	rs144851383	G	GAC	1622.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	122359840	rs374638812	CGTTTTTT	C	1622.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	122436528	rs163188	C	G	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr5	122682154	rs2303719	T	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	122682348	rs1047438	A	G	11198.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr5	122685727	rs1047437	C	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	122685801	rs485847	G	A	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	122685906	rs35423173	CT	C	306.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr5	122714134	.	TA	T	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=1.700;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr5	122718736	rs6595440	G	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	122725578	rs72789870	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	122727026	rs6876883	G	A	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	122728913	rs35574017	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	122734724	rs11419318	T	TA	197.79	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr5	122739421	rs7715577	G	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	122754293	rs71574108	GTT	G	707.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;QD=26.21;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr5	122758268	rs6882791	G	C	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	122909345	rs7712330	G	C	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	123966143	rs199644266	AGTGTGT	A,AGT	506.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=31;set=Intersection	GT:AF:DP	1/1:1.00:12
chr5	123966399	rs11953210	A	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	123966576	rs11959759	C	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	123973701	rs6896590	T	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	123974608	rs4371750	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	123979071	rs6878299	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	123983915	rs6862252	G	T	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	123984763	rs7708070	C	T	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr5	123985484	rs11422549	C	CA	769.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	125696140	rs11241887	G	A	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	125807911	rs61486463	T	C	4455.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	125809145	rs11746520	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	125809149	rs190287078	A	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	125828803	rs4358517	A	G	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	125880589	rs2775	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	125891500	rs62391521	C	T	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	125895126	.	G	GTT,GTTT	653.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=26.15;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,14,11:0.56,0.44:25
chr5	125904208	rs3734174	A	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	125906344	rs6897789	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	125928395	rs60720055	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	125929000	rs146736809	A	AAC	518.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr5	125929187	rs75035568	GA	TT	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	125939966	.	CTTTTT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=-0.416;QD=5.45;ReadPosRankSum=0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr5	125944219	rs112502491	G	GTGTTTT	993.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	125950801	.	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.709;QD=2.11;ReadPosRankSum=1.326;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr5	126145771	rs2271354	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	126156531	rs34618438	GT	G	619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=0.700;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr5	126168563	rs5871235	TG	T	136.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	126171999	rs1051643	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	126250459	.	A	AACACAC,AACAC	1115.75	.	AC=1,0;AF=0.500,0.00;AN=2;DP=49;set=Intersection	GT:AF:DP	0/1:0.73:41
chr5	126253538	rs36120055	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=1.043;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr5	126746277	rs31483	C	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	126792974	rs3812052	T	A	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	126993249	rs45074	G	C	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	126993263	rs248709	A	T	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	127485599	rs2617618	C	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	127522153	rs11382084	G	GT	1520.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.822;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=10.572;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.501;QD=17.09;ReadPosRankSum=-0.609;SOR=0.038;set=HC	GT:AD:AF:DP	1/1:7,82:0.92:89
chr5	127664594	rs28763941	T	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	128301824	rs2526246	T	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	128301885	rs2526247	T	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	128301971	rs2577541	T	C	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	128302368	rs147696009	CCT	C	606.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	128359247	rs31271	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	128732848	rs7443230	C	T	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	128863471	rs6595908	A	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	128984787	rs30676	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	129015668	rs246443	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	129072943	rs1465686	G	T	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	129244133	rs2431206	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	129519874	rs10066410	G	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	129521126	rs2015018	A	G	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	130726599	rs147277736	TAAAATTCTGGG	T	1776.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=43.33;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	130766662	rs1291602	T	C	5591.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	130776053	rs1422081	C	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	130788642	rs12656936	A	C	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	130788698	rs10054168	C	T	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	130805475	rs56228197	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	130867733	rs1029472	G	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	131008194	rs26008	T	C	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr5	131066725	rs7730228	C	A	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr5	131283376	rs683749	C	T	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	131283541	rs34365565	GA	G	387.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	131312327	rs370652	G	T	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr5	131320942	rs422291	A	T	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	131320959	rs67060241	GT	G	3697.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.87;QD=44.55;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	131320960	.	TC	GC	1629	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=26;MQ=68.15;NF=41,15;NR=22,22;PP=1077,1629;QD=17.6471621039;SC=GTGCAGGAGGTCACCCAGTGT;SbPval=0.53;Source=Platypus;TC=69;TCF=45;TCR=24;TR=63,37;WE=131320968;WS=131320950;set=Platypus	GT:AD:AF:DP	0/1:6,63:0.91:69
chr5	131320960	.	TC	T	1629	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=1.0000,1.0000;HP=2;HapScore=1;MGOF=14;MMLQ=26;MQ=68.15;NF=41,15;NR=22,22;PP=1077,1629;QD=17.6471621039;SC=GTGCAGGAGGTCACCCAGTGT;SbPval=0.53;Source=Platypus;TC=69;TCF=45;TCR=24;TR=63,37;WE=131320968;WS=131320950;set=Platypus	GT:AD:AF:DP	0/1:0,37:1.00:37
chr5	131320961	rs115222986	C	G	3706.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.87;QD=44.66;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	131326522	rs5871439	AC	A	6957.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:4,248:0.98:252
chr5	131347853	rs139502999	C	T	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	131396478	rs40401	C	T	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	131411460	rs25882	T	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	131540053	rs159903	C	T	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	131546280	rs154483	A	G	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr5	131553665	rs154485	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	131593336	rs70974026	C	CG	506.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.78;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	131658085	rs270600	T	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	131705949	rs2631365	T	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	131719999	rs4551059	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	131720070	rs274559	A	G	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	131721174	rs274558	A	G	5140.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	131721204	rs274557	T	C	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	131722951	rs274555	C	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	131730052	rs60522531	CA	C	1598.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	131755477	rs4451042	G	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	131755651	rs1003533	C	T	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	131796498	rs2522048	T	C	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr5	131796573	rs2522049	T	C	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	131796609	rs2522050	C	T	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	131805591	rs2522063	G	T	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	131805735	rs2706379	C	T	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	131892357	rs2706335	C	T	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	131892979	rs4526098	G	A	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	131995843	rs1295686	T	C	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	131995964	rs20541	A	G	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	132009710	rs2070874	C	T	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	132018132	rs2243289	A	G	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	132018169	rs2243290	C	A	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	132036252	rs1468216	T	C	5209.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	132042007	rs3798131	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	132042146	rs3798130	C	T	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	132044738	rs2299006	C	G	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	132046590	rs7737031	C	T	5755.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	132069847	rs9784600	G	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	132070242	rs7732520	C	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	132073002	rs2277065	A	G	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr5	132083458	rs803056	G	C	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	132084229	rs72799426	A	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	132084956	rs803055	G	A	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	132086817	rs708461	G	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	132093994	rs42403	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	132094512	rs112034900	G	A	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	132098242	rs30510	A	G	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	132098420	rs30509	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	132099999	rs30507	A	G	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	132149684	rs40274	G	C	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr5	132150948	rs40470	T	G	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	132220941	rs112056995	CGT	C	236.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	132232715	.	A	G	2971.77	.	AC=2;AF=1.00;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	132239876	rs145768432	GAGATCGAGGCTGCAGTGAGCTACGACCACACCACTACACTCC	G	212.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.477;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr5	132239879	.	ATCGAGGCTGCAGTGAGCTACGACCACACCACTACACTCCAG	A	48.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=0.117;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr5	132270663	rs10039125	T	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	132273031	rs2288387	T	C	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	132424963	rs78225557	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	132561277	rs2241583	G	A	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	133474472	rs199669401	G	A	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	133509473	rs140239984	G	GT	1933.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	133537438	rs2302598	T	A	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr5	133537479	rs2302599	T	G	2560.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.336;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=3.177;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.16;ReadPosRankSum=-0.678;SOR=0.375;set=HC	GT:AD:AF:DP	1/1:1,105:0.99:106
chr5	133541548	rs2239543	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	133561589	rs3863186	G	C	9777.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr5	133635270	rs115299124	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	133707247	rs35950497	CT	C	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:6,68:0.92:74
chr5	133861310	.	A	AT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=2.023;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:41,10:0.20:51
chr5	133873572	rs329126	A	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	133887780	rs12163993	G	A	17191.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr5	133896744	rs2589404	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	133897829	rs329304	C	T	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	133900111	rs329311	A	C	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr5	133909475	rs329322	G	A	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr5	133942492	rs7728741	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	133944043	rs199526981	ATT	A,AT	1323.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=90;set=Intersection	GT:AF:DP	1/2:0.29,0.63:87
chr5	133944575	rs188377048	T	C	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	134011834	.	C	CT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=1.173;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:86,28:0.25:114
chr5	134015523	rs10042142	C	G	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	134033777	rs246341	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	134039742	rs151247213	TTTTA	T	175.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	134076812	rs12657663	G	A	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	134106761	rs35505581	CTCTT	C	951.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=43.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	134113558	rs254713	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	134164284	rs34675300	GT	G	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.364;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.094;SOR=1.463;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr5	134210992	rs182410809	G	C	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr5	134223593	rs3733897	A	G	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	134344497	rs299376	T	C	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	134344929	rs299378	C	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	134782013	rs17168357	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	134782414	rs12518053	G	T	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	134782450	rs12520799	T	A	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	134782510	rs12520809	T	C	6747.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	134782576	rs1031844	T	G	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	134986006	rs801560	G	A	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	134986196	rs10045717	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	134986256	rs149152270	A	AAAC	1421.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=41.82;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	135138782	rs11738183	T	C	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	135178124	rs2304075	T	C	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	135186075	rs2304077	A	G	6776.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	135188214	rs2304078	G	C	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr5	135207382	rs2304080	C	T	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr5	135215575	rs2269926	A	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	135215835	rs71857174	C	CT	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.462;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:68,20:0.23:88
chr5	135223713	rs9327734	G	T	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	135228165	rs2069885	G	A	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	135229633	rs2069882	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	135258156	rs115054400	G	A	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	135276314	rs40986	C	T	4749.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	135277394	rs11376205	G	GT	789.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr5	135365006	rs4976361	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	135379612	rs4976464	A	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	135385316	rs17169753	T	C	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	135388663	rs1054124	A	G	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr5	135391326	rs6860369	A	G	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	135391374	rs1133170	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr5	135392426	rs4669	T	C	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	135396452	rs13168506	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	135396468	rs13188659	T	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	135396669	rs6880837	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	135496820	.	CA	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-1.328;SOR=1.320;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr5	135510017	rs62385789	A	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	135513085	rs55765823	T	TC	4433.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	135692575	rs2546661	G	A	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr5	135700760	rs11307237	GA	G	353.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	136315200	rs3217011	AT	A	4174.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	136315221	rs13158661	C	T	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	136328015	rs13181865	T	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	136328367	rs3777224	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	136833955	rs372446202	CCA	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.920;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr5	136969637	rs7713180	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	136969953	rs2301709	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	136975687	rs2074348	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	136975819	rs4370266	A	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	136997776	rs70979550	AC	A	1833.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.73;QD=33.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	136997803	.	A	AAAAG	594.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;QD=24.78;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr5	137013106	rs2967791	C	T	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	137027953	rs2301710	A	T	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	137028029	rs2905608	T	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	137056027	rs6887727	T	C	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	137089327	.	G	A	14180.77	.	AC=2;AF=1.00;AN=2;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr5	137206560	rs6890689	A	C	8745.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	137225387	rs116292864	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	137241856	rs700605	T	C	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	137257288	rs4304074	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	137259179	rs12187140	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	137259251	rs13188503	C	T	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	137271968	rs7701617	T	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	137347498	rs10064910	G	A	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	137354851	rs57706343	C	CA	307.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr5	137372207	rs6596419	A	T	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	137420376	rs4835762	T	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	137454358	rs6878575	C	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	137476416	rs412051	T	C	7211.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	137485292	rs217270	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	137486640	rs79552163	A	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	137507104	rs200476181	TAA	T	2568.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.77;ReadPosRankSum=1.651;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:15,103:0.87:118
chr5	137513369	rs10671440	G	GAA	2606.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.573;QD=24.36;ReadPosRankSum=-1.180;SOR=0.597;set=HC	GT:AD:AF:DP	1/1:4,103:0.96:107
chr5	137524951	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=0.053;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr5	137527917	rs2231478	C	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	137622388	rs10515500	C	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	137717265	rs6865472	G	A	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr5	137780336	rs4835794	T	C	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	137846155	rs4835685	A	G	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	137847082	rs35404194	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=41.77;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	137847086	rs137924468	CACACAT	C	136.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=62.31;MQRankSum=-0.849;QD=8.04;ReadPosRankSum=0.581;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr5	137847090	rs376642798	CAT	C	423.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=62.31;MQRankSum=1.037;QD=24.93;ReadPosRankSum=-0.423;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr5	138117938	rs700626	A	G	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	138473077	rs11431215	C	CA	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	138713959	rs6596474	A	C	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	138718476	rs11242461	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	138718878	rs59914331	C	CA	201.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	138720108	rs11242462	C	T	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	138720336	rs6596476	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	138723112	rs138480317	C	CTCCA	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	138723168	.	G	GT	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.878;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:68,22:0.24:90
chr5	138724126	rs33937093	TG	T	1237.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	138724457	rs9327846	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	138725509	.	CCAG	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=3.247;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.587;QD=2.04;ReadPosRankSum=-0.276;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:56,9:0.14:65
chr5	138728483	rs10078623	A	G	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	138728533	rs10063870	C	T	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	138730037	rs11748963	T	C	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	138730407	rs73255289	C	T	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	138758546	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.230;QD=4.71;ReadPosRankSum=1.077;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr5	139061148	rs57638253	CT	C	986.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	139202369	rs145276080	C	T	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	139213452	rs4912884	A	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	139216901	rs11440487	A	AG	3620.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	139741370	rs717097	C	A	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	139745154	rs6860077	T	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	139889166	rs78028717	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	139912224	rs62384164	A	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	139921961	rs9324644	G	A	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	139931628	rs3085220	A	AGT,AGTC	5869.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AF:DP	1/1:1.00:128
chr5	139931629	.	C	G	1396	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=37;NR=40;PP=1396;QD=18.5814443188;SC=TCCTCCATCACAGCCTCAGAC;SbPval=0.56;Source=Platypus;TC=83;TCF=40;TCR=43;TR=77;WE=139931637;WS=139931618;set=Platypus	GT:AD:AF:DP	1/1:6,77:0.93:83
chr5	139931629	rs5871740	C	CG	5869.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	139931776	rs60236323	AGG	A	2059.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	139931779	rs10589076	T	A	2068.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	139936680	rs143712554	ACCC	A,AC	9049.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=6.649;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.207;QD=35.35;ReadPosRankSum=0.675;SOR=2.603;set=HC	GT:AD:AF:DP	1/2:1,107,148:0.42,0.58:256
chr5	139936760	rs250426	G	T	6141.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,242:0.99:244
chr5	139936980	rs250427	A	G	8611.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr5	139937146	rs2249213	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	139940233	rs250431	G	A	11610.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr5	139941228	rs250430	A	G	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	139941318	rs171632	A	G	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	140023818	rs753279	C	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	140027592	rs70988770	G	GGT	629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=1.494;QD=16.57;ReadPosRankSum=-1.204;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr5	140032871	.	C	CT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.064;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr5	140048267	rs2530245	T	C	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr5	140056775	rs11954514	A	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	140077699	rs2530234	A	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	140167463	rs3733710	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	140168070	rs2240696	A	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr5	140168151	rs2240695	G	T	5743.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr5	140174622	rs9686540	G	A	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	140174865	rs11167600	G	C	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	140180737	rs3806845	C	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	140181734	rs3733708	A	G	11229.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	140181892	rs3733707	T	C	5245.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr5	140182101	rs7701755	G	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	140183058	rs2240694	G	A	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	140186438	rs3756337	G	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	140186657	rs4151680	A	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	140186937	rs11167605	G	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	140186988	.	AGG	A	310.75	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.61;QD=51.79;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	140187048	rs3822349	G	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	140187102	rs3822347	A	G	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	140187322	rs3822346	C	T	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	140188383	rs2337987	T	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	140188401	rs2879086	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	140188575	rs2879087	G	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	140189056	.	G	A	6472.77	.	AC=2;AF=1.00;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	140201264	rs4151682	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	140201420	rs11958868	T	C	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	140203432	rs4141841	C	T	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	140209467	rs7710794	T	G	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	140214381	rs10067182	G	A	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	140221195	rs199713478	G	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.692;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.308;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=-5.610;QD=2.96;ReadPosRankSum=-2.659;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr5	140222157	rs3733705	A	C	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	140222641	rs6580012	A	G	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	140222738	rs62622825	T	A	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr5	140237387	rs251364	T	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	140237548	rs630162	A	G	11321.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr5	140242451	rs11321479	GC	G	2206.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	140242479	rs251369	T	A	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	140248539	rs192231	C	T	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	140255792	rs251377	C	A	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	140263290	rs251380	T	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	140264348	.	CT	C	592.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	140389124	rs141154047	C	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	140517174	rs400562	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=59.03;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	140559914	rs2740583	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	140561983	rs2204704	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	140567608	rs11167743	C	T	7073.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.90;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	140568034	rs33974901	C	CA	9045.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	140569069	rs189058805	G	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	140682958	rs10075302	C	A	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	140683527	rs77201699	A	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	140710705	rs2472647	G	A	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	140712375	rs151257732	C	A	6584.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr5	140712772	rs188101907	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	140718566	rs191299749	T	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	140719283	rs150706052	A	T	10735.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr5	140724060	rs11575948	A	C	8214.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr5	140725828	rs7736541	C	T	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	140731375	rs186558249	C	T	5657.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr5	140731408	rs3749777	A	G	5199.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	140735215	rs11575949	G	A	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr5	140736474	rs17097226	T	G	11840.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr5	140736554	rs146063218	G	A	8613.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr5	140737350	rs148673110	T	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	140741673	rs73265834	G	C	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.57;QD=27.79;SOR=1.747;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	140741738	rs62378417	G	C	13366.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr5	140741761	rs57735633	A	G	14581.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr5	140744395	rs57308563	T	C	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	140745370	rs138451800	G	A	14522.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr5	140745790	rs141416995	C	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	140750044	rs6860609	T	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr5	140751128	rs2240697	C	G	8192.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	140762406	rs11575957	T	C	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	140762763	rs7704696	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	140763029	rs2072315	A	G	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr5	140772679	rs148589854	C	T	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	140773719	rs141035845	G	A	9116.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	140774288	rs4912749	T	C	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	140778760	rs138699584	G	A	5721.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	140780321	rs6880273	C	A	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	140782731	rs11575960	G	A	4798.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	140783596	rs1363448	C	T	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	140784055	rs3749770	T	C	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	140784957	.	TTTTC	T	6488.73	.	AC=2;AF=1.00;AN=2;DP=169;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	140789026	rs139792503	T	C	13203.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr5	140789415	rs149920059	G	A	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr5	140789933	rs3749767	G	A	11981.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr5	140793007	rs4912751	A	G	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	140795208	.	TA	T	771.73	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	140795339	.	T	A	198	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=20;HapScore=2;MGOF=17;MMLQ=27;MQ=52.8;NF=0;NR=8;PP=198;QD=29.0964015684;SC=TTTTTTTTTTTACTTTCTGGT;SbPval=1.0;Source=Platypus;TC=10;TCF=2;TCR=8;TR=8;WE=140795347;WS=140795329;set=Platypus	GT:AD:AF:DP	1/1:2,8:0.80:10
chr5	140797339	rs2240701	C	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	140797630	rs2015825	G	T	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr5	140797827	rs144490159	G	A	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	140797963	rs139206858	A	G	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	140798377	rs149866479	A	G	12315.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr5	140799205	rs191182165	C	T	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	140799449	rs145814583	T	A	9251.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr5	140803317	rs144521096	T	TG	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=-1.404;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr5	140806482	rs143411146	G	A	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	140806676	rs141512367	C	A	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	140810246	rs11575965	T	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	140857222	rs138608867	T	C	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	140857798	rs1423148	T	C	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr5	140864784	rs138463062	C	T	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	140867152	rs114918874	C	T	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	140867347	rs1423149	C	T	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	140868658	rs148910315	T	TAAG	829.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	140870516	rs2074912	A	G	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr5	140870949	rs918558	G	T	10572.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr5	140871425	rs17208425	A	G	6381.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.05;ReadPosRankSum=2.445;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:2,243:0.99:245
chr5	140871538	rs62379205	T	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	140903874	rs145027704	A	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	140907266	.	TAA	T	639.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.745;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.577;QD=18.28;ReadPosRankSum=0.729;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:5,30:0.86:35
chr5	140915616	rs147677041	C	T	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr5	140915703	rs79832875	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	140940577	rs138799105	C	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	140951190	rs148327446	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	140953563	.	T	TGGAGGAGGAGGAGGA	1412.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.70;QD=56.51;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	140955777	rs2302103	C	T	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	140962597	rs55900860	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	140963623	.	C	CA	2003.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=3.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.688;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:20,117:0.85:137
chr5	140963678	.	TC	T	4381.73	.	AC=2;AF=1.00;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	140963869	rs138084142	T	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	141005687	rs2547547	A	G	10187.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr5	141008559	rs41290605	G	A	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	141014494	rs2530223	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	141014575	rs41290607	T	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	141016276	rs32954	T	C	27225.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr5	141016288	rs1421896	T	G	26233.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr5	141019110	rs14251	C	A	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	141020100	rs41098	C	A	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	141024048	rs469522	A	G	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr5	141025162	rs456998	G	T	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	141026812	rs17286989	A	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	141027399	rs468968	TG	CC	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	141030640	rs17287002	C	T	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	141033870	rs61749636	T	G	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr5	141034040	rs79862920	TAA	T	5512.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	141034123	rs6580194	T	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	141034792	.	TACACACAC	T,TAC	2094.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.07;SOR=1.094;set=HC	GT:AD:AF:DP	1/2:0,11,40:0.22,0.78:51
chr5	141036337	rs7703648	A	G	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	141041435	rs3749759	G	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	141045076	rs4912765	T	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	141045976	rs62380787	A	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	141049407	rs3763120	G	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr5	141052870	rs440279	G	C	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	141059649	rs417503	A	G	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr5	141059868	rs11167756	T	C	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	141243646	rs3797054	A	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr5	141244356	rs3822357	C	T	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr5	141247181	.	TA	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=6.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=1.722;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr5	141257977	.	AGGCGGC	A,AGGC	1079.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=31;set=Intersection	GT:AF:DP	1/1:1.00:25
chr5	141304314	rs6580206	T	A	2673.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.459;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.335;MLEAC=2;MLEAF=1.000;MQ=60.26;MQRankSum=0.560;QD=20.10;ReadPosRankSum=0.139;SOR=0.482;set=HC	GT:AD:AF:DP	1/1:9,124:0.93:133
chr5	141312659	.	CAA	C	117.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.272;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=14.66;ReadPosRankSum=1.242;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr5	141324955	rs5871792	C	CCTGCTG,CCTGCTGCTG	11639.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=309;set=Intersection	GT:AF:DP	1/2:0.08,0.92:261
chr5	141325249	rs105633	T	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr5	141334921	rs2434322	C	T	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr5	141335241	rs164073	A	G	12422.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,458:1.00:460
chr5	141335284	rs164074	G	A	11086.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr5	141336264	rs164075	G	T	3840.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	141337126	rs164076	C	T	13347.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr5	141337225	rs164077	A	G	10473.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr5	141354220	rs187542	G	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	141357719	rs66768569	TTGTA	T	1407.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	141364511	rs252099	A	G	12624.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,491:1.00:491
chr5	141364637	rs252100	C	T	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	141367202	rs374840	GA	TT	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	141371557	rs143763915	CTTT	C	554.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=19.13;ReadPosRankSum=1.174;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr5	141382584	rs252114	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	141488792	rs9324865	T	C	80.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr5	141511561	rs2338820	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	141511660	rs10515512	A	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	141512017	rs77710969	G	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	141512017	.	GCT	CCA	814	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=1;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=4;NR=14;PP=814;QD=48.1926597146;SC=TGAAAGTAGAGCTAATTTTAA;SbPval=0.58;Source=Platypus;TC=18;TCF=4;TCR=14;TR=18;WE=141512027;WS=141512007;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	141512019	rs76426931	T	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	141520013	rs71576132	C	CA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.862;QD=3.63;ReadPosRankSum=0.201;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr5	141533062	rs449454	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	141533173	rs3833446	AT	A	1035.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	141533177	rs201310766	T	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	142254679	rs185200	A	G	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	142259083	rs27779	C	A	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	142287159	rs36220244	AAGGGT	A	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	142287517	rs5871829	T	TC	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	142311442	rs712176	A	G	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	142311509	rs712177	T	C	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr5	142416741	rs192194	T	C	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	142421287	.	GAA	G,GA	1686.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=0.280;QD=19.17;ReadPosRankSum=-1.391;SOR=0.633;set=HC	GT:AD:AF:DP	1/2:1,62,25:0.70,0.28:88
chr5	142421415	rs2270068	T	G	5630.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	142435748	rs6580266	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	142513686	rs246607	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr5	142593652	rs258819	C	T	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	142595995	rs258821	C	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	142596013	rs258822	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	142671092	rs150299999	A	ATTACTTTTCTTTAGCCTAAG	2118.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	142693846	rs4986593	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	145144419	rs338887	G	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	145176221	rs338898	C	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	145197411	rs6870210	C	T	11081.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr5	145198805	rs624380	T	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	145199430	rs11293460	AG	A	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	145199681	rs139755910	TTTTTG	T	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.293;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=10.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.829;SOR=0.025;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr5	145199682	.	TTTTG	T	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.198;SOR=2.683;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr5	145202461	rs6898776	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	145246085	rs2569006	T	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	145252574	rs10037373	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	145427527	rs1859895	T	A	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	145439647	rs2962525	T	C	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	145483703	rs2962544	G	A	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	145512367	rs11321164	TA	T	284.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.631;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;MQRankSum=0.605;QD=14.25;ReadPosRankSum=-1.333;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr5	145515379	rs2963919	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	145522912	rs2962504	A	G	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	145557046	.	AATATAT	A	34.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=0.842;QD=6.95;ReadPosRankSum=-0.842;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr5	145557052	.	T	A	31.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-0.000;QD=7.94;ReadPosRankSum=1.150;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,1:0.25:4
chr5	145557054	.	T	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-0.000;QD=6.35;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr5	145838440	rs11743333	G	A	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	145850459	rs11463725	G	GT	133.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	145851163	rs11391120	A	AT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=3.419;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr5	145858010	rs4705359	A	G	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	145890028	rs4705103	A	G	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	146030055	rs6866598	C	T	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr5	146420371	.	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=-2.225;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr5	146434047	rs5872003	TA	T	747.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:3,39:0.93:42
chr5	146434060	rs2400241	C	T	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	146435163	rs11958187	G	A	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	146619206	rs4705132	G	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	146657584	rs6580458	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	146657838	rs6580459	G	A	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr5	146728149	rs10072514	C	G	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	146728396	rs72831396	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	146753004	rs4235731	T	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	146754839	rs10515585	C	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	146775311	rs2288808	A	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	146775377	rs2288807	G	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	146777188	rs2304045	A	G	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	146777447	rs74828553	A	ATAGAAAGAG	477.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;MQ=65.19;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	146780521	rs13168262	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	146781440	rs3816013	A	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	146971253	rs7449194	C	T	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	146981164	rs111740872	TCAAAACAAAACAAAA	T	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	147445108	.	TCA	T	66	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=24;MQ=60.0;NF=1;NR=1;PP=66;QD=34.5;SC=AGCCTCTCTCTCACACACACA;SbPval=0.3;Source=Platypus;TC=12;TCF=2;TCR=10;TR=2;WE=147445117;WS=147445098;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr5	147516470	rs4334874	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	147516598	rs4349706	T	C	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	147516762	rs3088193	C	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	147549163	rs4269285	T	C	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr5	147554889	rs10052031	A	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr5	147554997	rs147123556	TTTTTTCC	T	2937.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=43.85;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	147555029	rs10074328	C	T	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=25.41;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	147593497	rs12186491	C	A	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr5	147785802	rs201558003	AT	A	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-0.289;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:112,30:0.21:142
chr5	147795697	.	A	AT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.521;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr5	148207659	rs372621803	AC	A	609.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.578;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=8.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.275;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:14,32:0.70:46
chr5	148407708	rs1432794	A	C	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	148521799	rs11744532	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	148562890	rs6886262	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	148562981	rs6887628	C	A	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr5	148586451	rs5872113	A	AG	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	148590423	rs2918281	T	C	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	148620451	rs45498700	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	148625972	rs77462377	T	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=0.663;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:10,37:0.79:47
chr5	148651711	rs12054749	T	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	148679301	rs171286	C	G	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	148682188	rs352341	G	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	148909077	rs12163992	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	148977613	rs7709875	C	T	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	148997686	rs6579750	A	G	11676.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr5	148999881	rs11409449	G	GC	1756.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	149000039	rs7733761	C	T	4547.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	149001551	rs4629585	A	C	6933.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	149240571	rs10045293	A	T	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr5	149247738	rs6864267	C	A	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr5	149276373	rs2244836	T	C	5826.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	149283406	rs251346	C	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	149294595	.	CTT	C	512.73	.	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=23.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	149301335	rs11167487	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	149323772	rs2277926	G	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	149323906	rs2277925	T	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr5	149360877	rs30832	T	C	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	149427387	rs2043284	T	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	149449827	rs34951517	C	T	6045.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	149495287	rs2229561	G	C	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	149495395	rs246388	T	C	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	149497099	.	GCGCGCGCGCACACACA	G,GCA	744.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=25;set=Intersection	GT:AF:DP	1/2:0.47,0.53:19
chr5	149497177	rs246391	T	C	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;MQ=60.73;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	149497228	rs2228440	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=26.51;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	149546426	rs2302274	A	G	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	149546828	rs2302275	C	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	149576233	rs2270145	G	A	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	149576273	rs2270146	C	T	8295.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr5	149576528	rs115027021	C	T	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr5	149578999	rs731376	T	A	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	149580819	rs3733680	G	A	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	149582103	rs2240788	C	T	6913.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	149583300	rs2240793	T	C	15762.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=38.73;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,407:1.00:407
chr5	149583336	rs2240794	T	C	13395.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=42.13;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	149583383	.	GGT	G	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=3.932;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.910;QD=3.61;ReadPosRankSum=-1.684;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:64,28:0.30:92
chr5	149584341	rs6878880	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	149584863	rs2342283	A	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.82;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	149584870	rs4423986	C	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	149584881	rs5024534	G	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.84;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	149584881	.	GTT	TTC	691	.	AC=2;AF=1.00;AN=2;BRF=0.07;FR=1.0000;HP=2;HapScore=1;MGOF=84;MMLQ=23;MQ=60.0;NF=26;NR=5;PP=691;QD=24.0150927375;SC=CCACTTCAGGGTTCGGTACAG;SbPval=0.53;Source=Platypus;TC=32;TCF=27;TCR=5;TR=31;WE=149584891;WS=149584853;set=Platypus	GT:AD:AF:DP	1/1:1,31:0.97:32
chr5	149584883	rs5024533	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.14;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	149584969	rs11428067	A	AG	7177.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr5	149584981	rs4705425	A	G	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr5	149585025	rs4705426	A	C	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	149610967	rs139753530	AAAT	A	1753.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.31;ReadPosRankSum=-1.064;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:1,46:0.98:47
chr5	149627423	rs7711562	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	149629683	rs4958452	T	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	149631413	rs2288799	A	G	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	149632955	rs7701427	C	T	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	149636073	rs10463293	T	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	149636109	rs10463294	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	149644597	rs891938	T	G	12907.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr5	149677851	rs6579784	A	G	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	149737221	rs4565199	T	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	149749197	rs77741284	C	T	12956.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr5	149771286	rs11742769	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	149781627	rs1056400	T	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	149784414	rs11749903	C	T	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	149792113	rs11739355	G	A	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	149792135	rs11739357	G	A	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	149792337	rs55796634	C	T	10535.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr5	149907533	rs2273235	T	G	8742.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr5	149907602	rs2273234	A	G	9049.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr5	149914401	rs2545341	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	149919739	rs1290147	G	C	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr5	149921251	rs2304063	G	C	5131.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr5	149931222	rs6579792	T	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	150051958	rs194134	T	C	13471.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr5	150282674	rs111355487	A	AT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.984;QD=0.39;ReadPosRankSum=0.215;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:70,15:0.18:85
chr5	150311622	rs12656542	A	G	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	150311678	rs11167525	A	G	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	150311773	rs7727919	T	C	7993.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr5	150311857	rs10719367	CT	C	3317.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	150323530	rs112582282	GTGGGAGAAGGTCGTGA	G	2067.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	150407456	rs8177447	T	C	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	150410135	rs3924	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	150413406	rs2233305	A	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	150415338	rs2287720	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	150484787	rs884520	C	T	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr5	150489390	rs1133202	A	G	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	150498981	rs2303022	C	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	150499080	rs2303023	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	150499102	rs2303024	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	150503784	rs2303027	C	T	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	150504097	rs56708608	TGAGAGAGAGA	T	1856.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	150516887	rs2303034	G	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	150518358	rs3213802	AG	GA	10893.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr5	150519670	rs10040510	T	A	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	150565770	rs193728	G	A	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	150567049	rs35221501	CA	C	2652.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	150567074	rs36036156	T	TG	2321.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	150567145	rs454130	G	A	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	150578574	rs3734038	A	G	6068.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	150603444	rs248461	C	G	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr5	150632676	rs2277028	A	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	150639409	rs153477	A	G	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	150639439	rs153478	A	G	8907.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr5	150647239	rs989	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	150666933	rs375396	C	A	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	150667771	rs246499	G	A	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	150677976	rs2431072	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	150696447	rs369907	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	150696540	rs431240	C	T	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	150704758	rs246496	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	150723806	rs192192	G	A	6480.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	150838284	rs35256722	C	G	2757.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=2.119;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	150838293	rs35074529	T	C	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.30;SOR=1.795;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	150838603	rs56026426	A	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	150838636	rs6891599	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	150843996	rs415426	T	C	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	150846663	rs78066852	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	150846706	rs76799041	AGCATT	A	1022.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	150846865	.	G	GA	393.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.79;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	150846882	rs61191955	C	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	150847505	rs441652	T	C	9379.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=43.42;SOR=1.158;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	150847509	rs394736	A	G	9324.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.56;QD=45.27;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr5	150847554	rs357621	T	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.02;QD=25.05;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	150847574	rs13357451	T	C	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.81;QD=22.46;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	150847604	rs189615	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	150848653	rs10709981	TA	T	2208.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:5,116:0.96:121
chr5	150848701	rs357624	A	G	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=25.27;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	150848874	rs357625	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	150853193	rs11279332	CTTTTGCTTTG	C	3963.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	150856079	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.079;QD=0.58;ReadPosRankSum=0.275;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:110,25:0.19:135
chr5	150856107	rs165352	T	G	5484.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.364;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;MQRankSum=0.137;QD=25.75;ReadPosRankSum=-0.627;SOR=0.364;set=HC	GT:AD:AF:DP	1/1:1,212:1.00:213
chr5	150886616	rs7723079	G	A	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr5	150886725	rs7723266	G	A	8639.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr5	150886882	rs1105168	G	A	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr5	150887184	rs75548276	G	GAGA	4613.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	150914184	rs1432643	A	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr5	150923405	rs6892335	A	G	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	150925144	rs3797875	A	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	150942919	rs6872614	A	G	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	150943007	rs150244445	G	A	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	150946966	rs1465690	G	A	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr5	150948537	rs1469680	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	151043016	rs71757813	CTA	C	1895.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	151047230	rs749575	A	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	151049404	rs7719521	A	C	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	151052659	rs1978707	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr5	151054131	rs2304051	A	G	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	151054227	rs2304052	T	C	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	151055637	rs7714314	C	G	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	151180451	rs200261823	AT	A	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=5.460;QD=1.81;ReadPosRankSum=-2.029;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:61,29:0.32:90
chr5	151771817	rs1363422	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	153085668	rs140268951	T	TTTTGTTTGTTTG	1340.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	153144216	rs3813470	A	G	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	153174310	.	G	GA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.143;QD=0.67;ReadPosRankSum=0.020;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:101,22:0.18:123
chr5	153372525	rs1057772	G	A	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr5	153372743	rs6866471	G	A	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	153381848	rs11748836	C	T	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	153382072	rs35082504	GTCT	G	728.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	153382602	rs75780714	A	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	153406644	rs9324765	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	153406987	rs6889563	G	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	153413390	rs2578377	C	T	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	153414545	rs34907432	C	CA	1060.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr5	153429459	rs690592	T	C	6678.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	153432450	rs11451300	A	AT	2826.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:3,129:0.98:132
chr5	153432733	rs2578386	T	C	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	153432970	rs2255493	C	T	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr5	153570349	rs201222592	C	CCGGGCGGA	411.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	153674536	.	TTG	T	249	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=3;MGOF=8;MMLQ=23;MQ=60.0;NF=0;NR=9;PP=249;QD=28.0;SC=GCACATATGCTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=38;TCF=0;TCR=38;TR=9;WE=153674547;WS=153674526;set=Platypus	GT:AD:AF:DP	0/1:29,9:0.24:38
chr5	153677361	.	TGA	T,TTCCCCGA	907.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=21;set=Intersection	GT:AF:DP	1/1:1.00:20
chr5	153677362	.	GA	CT	764	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=13;NR=1;PP=764;QD=58.3905624902;SC=TCTTTGTACTGAGCAAAAACT;SbPval=0.57;Source=Platypus;TC=17;TCF=16;TCR=1;TR=14;WE=153677371;WS=153677351;set=Platypus	GT:AD:AF:DP	1/1:3,14:0.82:17
chr5	153677363	.	A	ATCCCCCT	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.39;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	153709043	rs1004976	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	153789078	rs6580077	C	G	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr5	153795209	rs11167678	C	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	153795274	rs11321246	TA	T	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	153835378	rs1007404	C	G	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	153856974	rs1846966	C	G	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr5	154065382	rs33982250	TA	T	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=0.865;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:20,54:0.73:74
chr5	154065495	rs11958012	GG	AC	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	154134818	rs11416035	C	CG	294.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	154193735	rs863649	A	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	154202327	rs189576970	C	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	154247297	rs35471086	TAA	T	1196.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	154268745	.	AAT	A	997.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.39;QD=43.38;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	154268749	.	CTTA	C	1033.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.39;QD=44.94;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	154268754	.	GCACATATGAATGGGTAGAGAT	G	1033.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.39;QD=43.07;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	154268775	.	T	G	49	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=0.9999;HP=3;HapScore=2;MGOF=141;MMLQ=28;MQ=59.23;NF=4;NR=2;PP=49;QD=13.9618687579;SC=TGGGTAGAGATTTTAGAAACT;SbPval=0.46;Source=Platypus;TC=20;TCF=15;TCR=5;TR=6;WE=154268783;WS=154268765;set=Platypus	GT:AD:AF:DP	1/1:14,6:0.30:20
chr5	154268902	rs816739	C	T	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr5	154271391	rs702743	A	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	154271948	rs816736	G	A	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr5	154278888	rs816740	C	T	4743.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr5	154282551	rs10515726	T	C	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	154287016	rs76813157	T	TGAAAAAAAA	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.90;QD=50.14;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	154287115	rs6580119	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	154291219	rs6580121	A	G	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	154291409	rs1974777	C	T	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	154291496	rs1974776	G	A	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	154296795	rs348735	A	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	154300940	rs348739	A	C	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	154306972	rs2258437	T	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	154308282	rs2644743	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	154308307	rs1035368	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	154311235	rs2644744	T	C	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	154311576	rs2544866	T	C	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	154395158	rs6580126	G	T	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr5	155756414	rs11740347	G	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	155771579	rs1801193	T	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	155771773	rs4434364	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	155820716	rs10475703	C	A	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr5	156074654	rs141437738	TAAATTGA	T	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	156349362	rs11134456	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	156375335	.	C	CA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.311;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr5	156375372	rs71591078	T	A	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=0.318;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:10,50:0.83:60
chr5	156376462	.	TCCTTC	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.622;QD=1.51;ReadPosRankSum=2.520;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:32,7:0.18:39
chr5	156376703	rs6873053	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	156381370	rs7724832	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	156390297	rs6882076	T	C	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr5	156459856	rs34670839	C	T	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	156464212	rs4704837	T	G	2978.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr5	156464242	rs2036402	T	C	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr5	156469452	rs372022585	CAA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.39;ReadPosRankSum=-0.253;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr5	156469808	rs13173581	C	T	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	156479323	rs1553318	G	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	156479424	rs1553317	A	C	14388.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.96;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr5	156479424	.	AGT	CGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=23;MQ=60.0;NF=176;NR=109;PP=2947;QD=20;SC=AGGTAGAGACAGTTGTTGTCA;SbPval=0.59;Source=Platypus;TC=298;TCF=181;TCR=117;TR=285;WE=156479434;WS=156479414;set=Platypus	GT:AD:AF:DP	1/1:13,285:0.96:298
chr5	156479426	rs12522248	T	C	14388.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=44.55;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	156479509	rs1553316	A	G	12811.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr5	156479557	rs141023871	GTTGGAACAGTCGTCA	G	10468.73	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:2,402:1.00:404
chr5	156482099	rs2270925	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	156482101	rs2270924	A	T	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	156482459	rs1809941	G	T	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	156525920	rs371359315	AAG	A	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.381;QD=1.65;ReadPosRankSum=0.301;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr5	156531561	rs2902306	C	T	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	156531736	rs1036199	C	A	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	156531865	rs1036200	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	156644775	rs5872504	T	TC	3589.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	156721863	rs5872508	T	TC	5386.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr5	156721986	rs7724099	C	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	156723913	rs1600014	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	156734632	rs529619	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	156734644	rs144622623	G	GGTGTGTGT,GGTGTGTGTGT	592.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/2:0.42,0.58:12
chr5	156738830	rs393178	G	C	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr5	156749860	rs143886830	TTC	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.530;QD=1.30;ReadPosRankSum=0.921;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:62,10:0.14:72
chr5	156760313	.	TTC	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.543;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:115,13:0.10:128
chr5	156811670	rs4305634	G	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	156816522	rs889035	G	A	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	156887133	rs1105282	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	156889939	.	G	C	374.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	156898690	rs6860507	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	156898899	rs4704869	G	A	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	156898967	rs6879450	G	A	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	156899290	rs9313607	T	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	156899869	rs4704870	T	C	14484.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:1,565:1.00:566
chr5	156904633	rs10404	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	156916037	rs10674185	C	CAAAAAGAA	1717.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	156918987	rs11466790	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	156936549	rs1422794	G	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	157002552	rs6556092	A	G	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr5	157094771	rs36105993	TAC	T	2330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.085;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.617;QD=18.50;ReadPosRankSum=2.053;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:41,85:0.67:126
chr5	157164889	rs2270813	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	157164962	rs2270812	T	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	157165832	rs33954159	C	CT	42.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.549;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.28;ReadPosRankSum=0.319;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr5	157178592	rs56398160	TA	T	2678.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	157180930	rs35074350	CT	C	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr5	157180959	rs141155397	AAAT	A	2625.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	157236505	rs61251519	T	TA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.352;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr5	157246972	rs17054956	G	T	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	157247160	rs254673	G	A	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	158126222	.	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=0.810;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr5	158140222	rs3734105	G	A	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	158511579	rs200028682	CA	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=1.847;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr5	158511794	.	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=2.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.282;SOR=0.445;set=HC	GT:AD:AF:DP	0/1:79,23:0.23:102
chr5	158522577	rs12659540	C	A	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	158523584	rs6556385	T	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	158526534	.	TAA	T,TA	1997.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.31;MQRankSum=1.031;QD=12.18;ReadPosRankSum=-0.706;SOR=0.730;set=HC	GT:AD:AF:DP	1/2:23,33,108:0.20,0.66:164
chr5	158588749	rs17056583	G	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	158630629	.	G	GT	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.054;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr5	158750013	rs2288831	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	159462422	rs36052783	T	C	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	159478089	rs5872626	GT	G	255.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.516;QD=11.10;ReadPosRankSum=-0.412;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr5	159505208	rs4360078	C	A	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	159516404	rs4590210	C	G	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	159516431	rs4441910	G	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	159520661	rs56251777	T	C	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	159640652	rs6556482	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	159665523	rs10071756	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.56;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	159665527	rs10056227	G	A	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	159665534	rs10079413	A	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.94;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	159665599	rs2277954	G	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	159665726	rs10071871	C	T	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	159665733	rs2277953	C	T	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	159781724	rs62377486	C	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	159820931	rs10515808	C	A	9897.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr5	159831736	.	G	GA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.264;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:87,21:0.19:108
chr5	159839530	.	T	TA	173.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr5	159841492	.	TA	T	106.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-1.512;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr5	159841493	rs79791419	A	T	721.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.543;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=0.881;SOR=1.667;set=HC	GT:AD:AF:DP	0/1:24,51:0.68:75
chr5	159841494	.	A	T	115.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.230;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.347;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:56,19:0.25:75
chr5	159849586	rs1895320	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	159851211	rs2910203	G	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	160043071	rs4921308	C	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	160043109	rs17052845	C	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	160044855	rs1363199	G	A	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	160047265	rs6862674	C	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	160049355	rs2032804	C	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	160097429	rs3828604	T	C	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=1.341;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	160097453	rs1990888	A	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr5	160097496	rs958912	A	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	160097632	rs958911	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	160763822	rs252958	A	C	2467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.062;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:66,171:0.72:237
chr5	160972443	.	TAAA	T,TA	1851.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.36;SOR=1.863;set=HC	GT:AD:AF:DP	1/2:8,29,39:0.38,0.51:76
chr5	160973808	rs370064343	TA	T	104.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=-0.906;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr5	161116903	rs4921402	C	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr5	161119071	rs12522663	G	T	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr5	161128627	rs34907804	C	T	7223.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr5	161128761	rs4277944	C	G	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	161281245	rs1129647	T	C	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	161292685	rs41304896	C	T	7572.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr5	161302728	rs4260711	G	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	161309752	rs11135172	T	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	161309779	rs12522082	A	T	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	161494990	.	GA	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-0.741;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr5	161528280	rs211037	C	T	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	161529571	rs211035	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	161529631	rs41311629	G	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	161569089	rs17060112	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	161579441	rs211013	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	162890953	rs380101	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	162891894	rs3756648	G	A	198.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	162911075	rs2230363	C	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	162938940	rs11307015	GT	G	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	162940739	rs964945	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr5	162944709	rs7733775	A	G	5711.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr5	162945387	rs200442777	CT	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.575;QD=2.03;ReadPosRankSum=0.360;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:80,27:0.25:107
chr5	167182055	rs1862875	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	167303239	rs1592800	G	A	4563.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	167303317	rs1862198	G	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	167489049	rs11411759	C	CT	241.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.606;QD=11.49;ReadPosRankSum=-1.484;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr5	167553880	rs10055910	C	T	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr5	167576239	rs10040595	A	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	167576513	rs35438448	T	TG	3228.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	167589932	rs1560649	G	C	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	167622107	rs1472355	G	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr5	167653067	rs141558250	TTATC	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.531;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr5	167674370	rs3733988	C	T	6583.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr5	167675327	rs202024280	G	A	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	167675392	rs12189266	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	167689296	rs17632540	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	167798585	rs2287703	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr5	167835766	rs6887919	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	167858462	rs377710964	TCTGG	T	3888.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	167891668	rs62384143	G	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr5	167891830	rs3203960	T	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	167986274	rs158894	G	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	168098463	rs292486	A	G	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	168175205	rs11748347	C	G	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	168176517	rs2304035	A	G	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr5	168180081	rs10036727	C	T	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	168187760	rs2288797	G	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	168188048	rs7725649	A	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	168189501	rs2288796	C	T	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	168195356	rs11134527	G	A	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;MQ=60.36;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr5	168212951	rs891921	A	G	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	168216489	rs2247645	G	A	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	168216649	rs200590301	AC	A	6945.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	168222623	rs7733421	C	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr5	168244447	rs4867964	C	G	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr5	168250350	rs924875	C	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	168250429	rs1875977	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	169096207	rs139378784	T	TAAAAC	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	169097474	rs2306564	G	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	169097505	rs111473735	T	TTTTTA	3670.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr5	169097940	rs2306565	G	A	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr5	169101599	rs2244445	C	T	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	169126349	rs2306562	A	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	169127097	rs2112703	C	A	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	169127270	rs2161405	G	A	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.37;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	169127276	rs264845	A	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	169129284	rs2306560	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr5	169129495	rs3816764	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	169267784	rs261623	G	A	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr5	169422920	rs2059110	A	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	169435880	rs10056324	C	T	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	169496051	rs6868503	T	C	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr5	169504743	rs1045168	T	C	13644.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:2,527:1.00:529
chr5	169504944	rs79354516	T	C	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr5	169533606	rs2277945	T	C	9956.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr5	169535522	rs10063424	T	C	13433.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr5	169672877	rs74533390	G	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	169675693	rs80044664	AT	A	6183.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	169679354	rs1546451	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	169679947	rs6880961	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	169685708	rs1702380	G	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	169685840	rs17648354	T	C	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	169689604	rs395407	G	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	169715038	rs315721	A	G	4313.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr5	169810966	rs703507	A	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	169910084	rs4867968	G	T	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	170145584	rs6555913	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	170145749	rs10039251	C	T	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr5	170145921	rs34377595	G	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	170149573	rs2277952	C	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	170160749	rs4868018	G	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	170221185	rs6884917	A	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	170221379	rs58100877	CAA	C	897.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;QD=16.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:15,38:0.72:53
chr5	170237090	rs6555921	T	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr5	170238904	rs3805458	C	T	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	170239112	rs1063310	C	A	11974.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr5	170288922	rs11749349	A	G	191.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	170289221	rs10475962	T	G	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	170323258	rs2287893	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	170336614	rs1833596	G	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	170341326	rs34458065	TTA	T	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	170343353	rs78171408	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	170380523	rs930891	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	170395512	rs2879366	A	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	170395820	rs11134672	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	170395885	rs2446049	T	C	124.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr5	170720755	rs2914330	T	A	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	170837457	rs55876025	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	170847555	rs6555955	T	C	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	170876364	.	C	CGTGTGTGTGTGT	497.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=41.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	171200659	rs27947	T	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	171200997	rs26400	C	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	171201499	rs12153230	G	C	7612.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr5	171217371	rs11950253	G	A	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	171423849	.	C	A	329.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr5	171472417	rs4867662	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	171472575	rs4868136	G	A	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	171480055	rs4569891	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr5	171509644	rs11741056	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	171510180	rs10516093	T	C	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr5	171533782	rs2306961	T	C	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr5	171534682	rs3836825	T	TGCCCACAGGCTGACCGGGC	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	171554516	rs2029523	A	G	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	171583610	rs41275267	A	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr5	171583809	rs2306960	C	G	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	171621408	rs35441810	A	AT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.712;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr5	171760544	rs35951290	TA	T	940.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	171760546	rs3204110	A	T	973.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=6.273;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	171760569	rs12033	A	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr5	171785892	rs2569232	A	G	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	171881423	rs139600850	G	A	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr5	172196711	rs2431663	G	T	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr5	172261546	.	G	C	2640.77	.	AC=2;AF=1.00;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	172261592	rs3059296	CT	C	801.90	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:4,32:0.89:36
chr5	172294194	rs793027	G	T	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr5	172336616	rs2302957	C	T	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr5	172347440	rs13187960	G	A	11297.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr5	172385267	rs34217217	C	CA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.579;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr5	172395664	rs11749686	T	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr5	172396394	rs505788	C	T	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr5	172494981	rs582067	C	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr5	172512686	rs671387	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	172561294	rs2544581	C	T	120.98	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=17.28;ReadPosRankSum=-0.792;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,6:0.86:7
chr5	172573767	rs29798	T	C	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	172585927	rs5745160	TC	T	7056.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr5	172588027	rs255303	G	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	172660508	.	CA	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=2.476;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.415;QD=2.84;ReadPosRankSum=-2.639;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr5	172745269	.	AAG	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.133;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr5	173316729	rs359467	G	A	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	173380346	rs969518	C	T	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	173416191	rs72814721	C	T	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	173416365	rs61730190	C	A	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	174152100	rs2048152	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	174156168	rs4242182	T	C	9134.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr5	174868700	rs686	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	174868840	rs155417	T	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	174870150	rs4532	C	T	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	174943551	rs3215174	GA	G	314.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	175307293	rs150763264	A	AG	5331.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:6,181:0.97:187
chr5	175353627	rs2161153	A	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.33;QD=25.43;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	175387139	rs79720333	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.57;QD=25.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	175388454	rs201670220	C	T	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.60;QD=25.33;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	175394887	rs370983527	C	T	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=17.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	175511992	rs62389230	C	T	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr5	175528527	rs116633144	A	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.20;QD=27.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	175530152	.	A	G	1440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=1.990;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=-4.309;QD=15.01;ReadPosRankSum=2.254;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:37,59:0.61:96
chr5	175665427	rs70991519	G	GC	254.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.15;QD=31.84;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr5	175717216	rs72645798	C	T	47261.77	.	AC=2;AF=1.00;AN=2;DB;DP=1769;set=Intersection	GT:AD:AF:DP	1/1:0,1767:1.00:1767
chr5	175721896	rs72645800	A	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;MQ=57.39;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	175721962	rs113772037	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.47;QD=40.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	175721968	rs143877714	A	C	833.18	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=7.179;MLEAC=2;MLEAF=1.000;MQ=59.05;MQRankSum=-0.672;QD=29.76;ReadPosRankSum=3.157;SOR=2.925;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr5	175763596	rs67874748	G	A	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	175772055	rs116685099	A	T	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	175774865	rs2241577	G	T	8429.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr5	175793717	rs3815898	C	T	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr5	175811094	rs56989856	C	CGT	15807.73	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr5	175813564	rs17078187	A	T	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr5	175815215	rs17832192	G	A	11493.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr5	175823607	rs376796902	TAG	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=2.484;QD=1.38;ReadPosRankSum=-1.458;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr5	175843461	rs33956988	CG	C	1358.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr5	175915835	rs2963667	C	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	175916083	rs10054778	T	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	175927262	rs143440054	C	CAG	2033.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:16,68:0.81:84
chr5	175933691	rs113700453	TGTGTGTGC	T	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr5	175992258	rs6556275	A	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	175992519	rs4523018	T	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	175994173	rs11392917	C	CT	922.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=11.83;ReadPosRankSum=2.117;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:16,62:0.79:78
chr5	175995935	rs10056130	C	T	10355.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr5	176001975	rs1078450	T	C	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	176002144	rs4242200	A	C	7273.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr5	176002873	rs3762969	C	T	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr5	176002926	rs3762968	C	A	9440.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr5	176004312	rs11749537	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	176004476	rs11134982	T	C	5362.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr5	176004846	rs1565149	C	T	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	176004866	rs35146200	A	AGT	3439.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:8,101:0.93:109
chr5	176004903	rs11747451	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	176005175	rs1565150	A	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	176005184	rs1565151	G	A	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	176005477	rs2358747	C	T	7928.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	176008238	rs4867840	G	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	176011264	rs752139	T	C	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr5	176011889	rs4868660	G	A	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	176017549	rs4868662	C	T	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	176018545	rs11134984	G	A	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr5	176024880	rs4868663	C	T	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr5	176025938	rs6556276	T	C	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr5	176053336	rs72322414	GGTGTGTGT	GGTGT,G	1768.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	1/1:1.00:43
chr5	176053645	rs2291441	C	G	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	176056529	rs4868669	A	G	16414.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.57;ReadPosRankSum=2.207;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:2,640:1.00:642
chr5	176069592	.	A	T	1117.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr5	176069831	rs901740	G	A	5422.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=24.54;SOR=1.494;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr5	176069862	.	C	CT,CCTCCCCG	228.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=126;set=Intersection	GT:AF:DP	0/1:0.19:125
chr5	176069863	.	C	CT	2126.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=1.759;QD=17.15;ReadPosRankSum=-0.601;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:30,94:0.76:124
chr5	176069866	.	C	G	1163	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=13;HapScore=1;MGOF=17;MMLQ=23;MQ=60.17;NF=15;NR=72;PP=1163;QD=13.7674852017;SC=CCCCCCCCCCCGCCCCAGGTG;SbPval=0.88;Source=Platypus;TC=107;TCF=26;TCR=81;TR=87;WE=176069874;WS=176069847;set=Platypus	GT:AD:AF:DP	1/1:20,87:0.81:107
chr5	176069866	rs56115420	C	CGCCCG,CCGCCCG	5103.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.85;QD=41.49;SOR=2.894;set=HC	GT:AD:AF:DP	1/2:0,24,99:0.20,0.80:123
chr5	176081856	rs13183320	A	G	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	176083175	rs6878977	T	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	176083997	rs4868677	G	A	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr5	176304399	rs2304517	A	G	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr5	176305466	rs2304516	T	A	15854.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr5	176306676	rs2292257	G	A	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr5	176316455	rs35610191	C	T	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	176323298	rs691141	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.83;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	176333126	rs2292256	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	176334195	rs2292255	C	T	3460.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr5	176338163	rs373478686	AAAGAAAAGAAAAG	A	3567.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.97;QD=38.36;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	176338288	rs17078630	C	T	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.94;QD=26.65;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	176378574	rs365132	G	T	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr5	176382995	rs3733876	G	A	7574.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr5	176402401	rs1700490	G	A	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr5	176471284	rs58095821	T	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	176471286	rs11448853	A	AG	744.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=41.37;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr5	176471591	rs149307	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	176516953	rs434434	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	176517136	rs59390048	C	CGTGT,CGT	1928.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=59;set=Intersection	GT:AF:DP	1/1:0.98:48
chr5	176517170	rs387598	G	A	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	176517292	rs442856	A	G	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr5	176517326	rs422421	T	C	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	176517461	rs446382	T	G	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr5	176517797	rs376618	C	T	22115.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:0,818:1.00:818
chr5	176518784	rs452885	C	T	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr5	176519287	rs393923	G	A	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	176520243	rs351855	G	A	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr5	176522728	rs42409	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	176523562	rs31777	C	A	7505.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr5	176523597	rs31776	A	G	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr5	176630984	rs7721671	T	C	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	176636882	rs1363405	C	T	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr5	176637149	rs3733874	G	A	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr5	176637240	rs3733875	G	T	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr5	176637576	rs28932178	T	C	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr5	176639217	rs35159794	T	TA,TAA	1279.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.531;QD=15.80;ReadPosRankSum=0.917;SOR=0.914;set=HC	GT:AD:AF:DP	1/2:9,53,19:0.65,0.23:81
chr5	176639304	rs6556305	C	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	176719140	rs146601031	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	176729736	rs58443060	AC	A	1988.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=17.889;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=4.521;QD=7.15;ReadPosRankSum=-1.857;SOR=0.043;set=HC	GT:AD:AF:DP	0/1:153,125:0.45:278
chr5	176759072	rs147436495	C	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr5	176764436	rs11541335	G	A	11353.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr5	176798040	rs56235845	T	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	176798070	.	CGGGCCGGGGCCGGGGCCG	C	509.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.31;QD=39.21;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	176831826	rs17876030	C	G	3193.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	176831980	rs17876029	T	C	10860.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.23;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,414:1.00:414
chr5	176885178	rs28538572	A	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	176895817	rs446104	GC	AA	11375.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr5	176917078	rs734825	T	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	176929974	rs2544814	G	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr5	176930135	rs28376231	G	A	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr5	176931706	rs179810	G	C	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr5	176935215	rs55761704	GC	G	1166.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	176936650	rs28565502	T	C	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr5	176938681	rs28695578	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	176939688	rs28544348	C	T	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr5	176939735	rs335436	A	G	10531.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr5	176940871	rs335439	G	C	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr5	176942371	rs372373486	CAG	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.553;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:106,17:0.14:123
chr5	176950794	rs28723606	A	G	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr5	176950879	rs28688891	T	C	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr5	176951276	rs337382	A	G	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr5	176959296	rs2246566	T	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr5	176963349	rs335460	G	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr5	177019688	rs4607363	G	C	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:16,232:0.94:248
chr5	177021302	rs199721339	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	177027076	rs145156383	G	GCGGCGGACC	397.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.82;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	177027110	rs28707336	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	177031348	rs11537644	T	C	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	177031602	rs28499092	C	G	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	177031954	rs28742937	A	G	9855.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr5	177031967	rs28698736	T	C	11277.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr5	177035488	.	GC	G	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.028;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:94,18:0.16:112
chr5	177035964	rs729459	T	C	11938.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr5	177036043	rs6600953	A	G	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	177053334	rs5013573	T	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	177054649	rs200910689	ATTT	A,AT	1896.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.799;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.60;MQRankSum=0.177;QD=36.48;ReadPosRankSum=1.833;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:2,19,31:0.37,0.60:52
chr5	177054672	rs7728458	T	C	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	177058655	rs6876792	A	G	11303.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr5	177058766	rs2334991	G	A	10793.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr5	177099071	.	A	G	55.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.67;QD=18.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177099140	.	T	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-3.957;QD=1.99;ReadPosRankSum=-0.456;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr5	177099274	.	C	A	391.77	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.75;QD=24.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	177161891	rs140979906	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.42;QD=29.60;SOR=2.511;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr5	177180236	rs76556918	G	A	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	177302646	.	T	C	73.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.00;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177305797	rs201185054	G	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.80;QD=33.43;SOR=6.994;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	177310717	rs139876295	A	G	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.20;QD=27.10;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	177344152	rs76284623	G	T	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.62;QD=25.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	177347910	rs200509090	G	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.02;QD=24.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177348037	.	C	CTTTG	1765.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.14;MQRankSum=-2.386;QD=40.13;ReadPosRankSum=0.932;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,42:0.95:44
chr5	177348098	rs4958970	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.83;QD=43.36;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr5	177348106	rs4958971	A	C	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.96;QD=43.73;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	177348150	rs4958972	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.33;QD=41.96;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	177348155	rs4958973	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.62;QD=45.80;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr5	177419967	rs1800197	C	T	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr5	177422823	rs4072924	C	T	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	177422876	rs7445271	T	C	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr5	177457620	rs200476067	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	177482694	rs11953084	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:4,96:0.96:100
chr5	177546990	rs13163671	G	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr5	177547247	rs7719667	T	C	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	177565520	.	TTG	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=-0.849;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr5	177570759	rs6601218	T	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr5	177612734	rs7720480	T	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr5	177612744	rs7715796	A	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.67;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	177612983	rs13169133	G	A	10175.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr5	177613123	rs10479619	T	C	11902.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr5	177613168	rs13184406	C	T	7976.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr5	177613296	rs13184677	C	T	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	177614001	rs3812083	T	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	177614090	rs2913782	G	C	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	177614094	rs2961665	C	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	177614137	rs3812086	C	T	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr5	177614183	rs2913783	T	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	177614366	rs3828691	C	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=39.54;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	177614387	rs6886332	A	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr5	177634401	rs7705458	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr5	177658625	rs3833653	CG	C	1516.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	177658883	rs2973729	C	A	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr5	177659631	rs2913859	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr5	177674589	rs72819017	C	T	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	177675217	rs2913851	C	T	10813.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr5	177675465	rs6894255	C	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr5	177676986	rs5873601	GCA	G	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr5	177679447	rs1549612	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	177679654	rs2033200	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr5	177679680	rs2973751	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	177682664	rs752283	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr5	177683011	rs890805	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	177683185	rs890803	T	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	177683377	rs890802	T	C	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	177684022	rs2913848	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr5	177684682	rs2913847	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	177686815	rs2973747	C	A	4362.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr5	177688772	rs2973745	G	A	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	177715291	rs890801	G	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.48;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	177715302	rs5873603	CA	C	2406.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	177715477	rs2913833	G	T	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	177715581	rs2913832	T	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	178030941	.	G	GA	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-2.110;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr5	178032179	.	G	GA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=2.077;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr5	178035585	rs501721	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr5	178040919	rs560842	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr5	178047536	rs72529437	GGACAGGGTA	G	2232.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr5	178047610	.	T	C	2127.77	.	AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr5	178373319	rs56954828	G	C	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr5	178391902	rs12719860	A	C	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr5	178395850	rs11741688	G	C	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr5	178396742	rs4700759	G	C	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr5	178401552	rs4700991	C	T	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr5	178404573	.	C	CT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=1.813;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr5	178407292	rs2856351	C	T	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr5	178410538	rs1475950	A	C	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr5	178410668	rs1475949	G	A	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr5	178410738	rs903988	C	T	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	178411315	rs2645341	C	T	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	178412592	rs6880010	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	178412702	.	T	TAA	1037.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.126;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-0.000;QD=51.89;ReadPosRankSum=1.036;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr5	178412716	rs11950921	C	A	1319.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;MQRankSum=0.000;QD=32.99;ReadPosRankSum=-0.522;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr5	178413816	rs2256966	T	C	11084.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr5	178413947	rs11746675	T	C	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr5	178414565	rs2645340	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	178415937	rs2067011	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	178415982	rs4701014	A	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr5	178416063	rs2645339	G	A	8240.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr5	178416203	rs143495088	CCCCTCCCCA	C	5051.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:3,125:0.98:128
chr5	178416288	rs2071246	G	A	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr5	178419279	rs11283410	G	GGGCAAGGTCT	5736.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr5	178419288	rs2645335	C	T	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr5	178419396	rs11449973	A	AC	6564.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr5	178421770	rs2645329	T	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr5	178422083	rs1078978	C	T	221.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	178503472	rs116407910	C	T	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	178555045	rs2303644	G	A	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr5	178557142	rs2251105	A	G	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr5	178562834	rs3822595	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	178562967	rs1972715	G	A	7479.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr5	178563125	rs1549603	A	T	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	178565001	rs2303639	C	T	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr5	178608341	rs11749583	C	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	178634619	rs423552	C	T	13744.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr5	178949465	rs28646142	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.95;QD=30.30;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr5	178949499	rs28689892	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.14;QD=29.33;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	178949560	rs28413987	AG	GT	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	178949781	rs28420183	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.92;QD=31.47;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	178950025	rs370274338	T	C	32.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=16.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr5	178950207	rs142217072	A	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.79;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr5	178950263	rs34793499	GA	G	149.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.07;QD=21.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr5	178951351	rs145029017	A	C	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.95;QD=30.39;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	178951365	rs138816614	C	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.54;QD=31.21;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	178951598	rs4701188	G	A	18769.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:1,711:1.00:712
chr5	178986978	rs7704349	C	G	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	179021761	rs57540208	CAAAA	C	1353.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.283;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.23;ReadPosRankSum=-0.904;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr5	179021982	rs28685239	G	A	6405.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr5	179025550	rs4701136	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	179032755	rs6877888	C	T	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	179036268	rs60104959	A	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	179036433	rs17355294	G	A	11663.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr5	179036608	rs8087	T	A	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr5	179041785	rs72253885	GA	G	110.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;QD=8.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr5	179042400	rs61408162	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	179043075	rs4515257	T	C	5866.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr5	179043982	rs34734159	C	CAA	10349.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr5	179049138	rs4301193	C	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	179069309	rs6887611	G	C	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr5	179069551	rs12519906	G	A	11374.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr5	179071958	rs7731123	C	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=9.343;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-13.121;QD=2.56;ReadPosRankSum=4.021;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:317,88:0.22:405
chr5	179078378	rs55837909	C	T	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr5	179078940	rs6882398	T	C	14542.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr5	179079104	rs113370076	G	A	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr5	179126090	rs1134924	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr5	179136138	rs6601068	A	G	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr5	179147641	rs59666900	C	T	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	179153577	.	C	CAA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.011;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr5	179260009	rs2241349	G	A	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr5	179260153	rs4935	C	T	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr5	179260213	rs4797	G	A	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr5	179260494	rs155787	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	179260528	rs155788	T	C	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	179264731	rs10277	T	C	6550.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr5	179264915	rs1065154	G	T	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr5	179267783	rs248247	G	A	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr5	179267949	rs248248	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	179275092	rs77603125	T	C	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr5	179278466	rs4700702	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr5	179280379	rs1650893	T	C	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr5	179285752	rs10060182	G	A	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr5	179287576	rs248254	C	G	12985.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr5	179287585	rs416974	G	C	13036.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.89;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr5	179287586	rs378684	C	T	12780.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.81;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr5	179287622	rs1611076	G	GTA	10100.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr5	179290845	rs30386	T	G	11106.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr5	179291279	rs172056	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr5	179298342	rs248252	G	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr5	179299867	rs532795	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	179305655	rs3734003	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr5	179334857	rs185073	A	G	2832.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr5	179405399	rs27019	C	G	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr5	179407229	rs28011	C	T	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr5	179528351	rs67139455	TG	T	854.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr5	179528359	rs113499659	G	C	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=41.16;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	179529124	rs7725201	G	A	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr5	179545763	rs202079156	C	T	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr5	179546264	rs36055015	A	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr5	179548294	rs55667285	C	T	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr5	179554602	rs57288534	C	T	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr5	179555407	rs13354066	T	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	179555654	rs6895192	C	T	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr5	179563359	rs55638756	C	T	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr5	179563435	rs11546322	T	C	8871.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr5	179565071	rs4700878	G	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr5	179565136	rs4700715	C	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	179665224	rs111661147	C	T	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	179667933	rs6895740	C	G	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr5	179728707	rs4700931	T	C	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr5	179729519	rs1035411	A	G	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	179729625	rs2303005	A	G	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr5	179734139	rs11741142	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr5	179734145	rs72363427	GTGGGGGTGGGGGC	G	3896.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr5	179734312	rs3763131	T	C	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr5	179740827	rs2303007	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr5	179743731	rs2303008	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr5	179779339	.	GAA	G	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=-1.077;QD=3.81;ReadPosRankSum=1.339;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr5	179780340	rs5873687	GT	G	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr5	179780382	rs11452117	A	AG	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr5	179980302	rs10516143	T	A	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr5	179980527	rs11738129	A	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr5	179991841	rs6874985	A	G	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr5	179994815	rs146190811	CTG	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.109;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:49,9:0.16:58
chr5	179996111	rs6877400	C	T	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr5	179998454	rs13164597	C	T	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr5	180017399	rs450383	T	C	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	180041001	rs421662	G	C	12090.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.32;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr5	180041008	rs366388	T	C	12732.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr5	180043388	rs1130378	G	A	11056.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr5	180043731	rs3765095	C	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr5	180046839	rs7707285	G	A	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr5	180047412	rs382266	T	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr5	180047739	rs141972439	C	CGT,CGTGT	4793.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=172;set=Intersection	GT:AF:DP	1/2:0.11,0.87:123
chr5	180047793	rs34419336	G	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr5	180047863	rs423086	C	G	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr5	180048056	rs2242214	C	T	11060.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr5	180048986	rs10635355	G	GCCTC	963.74	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr5	180049925	rs201607334	A	AC	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.144;QD=7.89;ReadPosRankSum=0.705;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr5	180049928	rs307828	A	C	804.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=33.53;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr5	180053307	rs402647	A	G	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr5	180055862	rs383985	T	G	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=2.783;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr5	180055862	.	TGG	GGA	1685	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=6;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=62;NR=11;PP=1685;QD=23.8146284228;SC=GCGGGGTCGGTGGGGAGCCAG;SbPval=0.7;Source=Platypus;TC=80;TCF=66;TCR=14;TR=73;WE=180055872;WS=180055852;set=Platypus	GT:AD:AF:DP	1/1:7,73:0.91:80
chr5	180055864	rs438464	G	A	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=2.560;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr5	180056192	rs399108	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr5	180056620	rs414348	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr5	180165983	rs2054696	G	C	765.96	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:4,34:0.89:38
chr5	180166461	rs10464105	C	G	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr5	180218668	rs634501	A	G	11010.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr5	180219304	rs7726005	C	T	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr5	180276402	rs168726	C	T	6396.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr5	180278393	rs705441	C	G	10933.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr5	180288239	rs2121117	G	A	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	180329517	.	G	GT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=3.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=2.309;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:116,27:0.19:143
chr5	180409595	rs4397092	A	G	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr5	180486224	rs7379015	T	G	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	180486247	rs6601166	G	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr5	180486785	rs10068763	G	C	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=25.57;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr5	180486841	rs10054109	C	T	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=25.19;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,322:1.00:322
chr5	180486891	rs33927456	C	CG	3384.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:3,130:0.98:133
chr5	180552412	rs7724668	G	C	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	180582043	rs17617270	C	T	9448.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr5	180625254	rs254458	G	A	7689.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr5	180626927	rs416574	A	G	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr5	180631817	rs2545112	T	C	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr5	180631828	rs2770945	G	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr5	180652241	rs2259749	T	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr5	180660259	rs35032551	G	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr5	180663941	rs113679128	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.965;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr5	180664372	.	G	T	400.77	.	AC=1;AF=0.500;AN=2;DP=87;set=Intersection	GT:AD:AF:DP	0/1:62,25:0.29:87
chr5	180664759	rs34681418	CA	C	557.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr5	180665829	rs144843273	AAAC	A	1799.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;QD=42.85;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr5	180666276	rs2287716	A	G	1750.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr5	180668964	rs2241370	T	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr5	180669136	rs17657699	C	T	212.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.28;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr5	180669370	rs2287715	A	G	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr5	180670251	rs1279738	C	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr5	180687212	rs918388	C	T	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr5	180687428	rs200454506	CTCT	C	14390.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr6	292694	rs3832447	GC	G	2173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.809;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:194,75:0.28:269
chr6	311797	.	G	GT	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.434;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=8.669;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.876;QD=1.34;ReadPosRankSum=0.807;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:223,63:0.22:286
chr6	312023	rs1342789	C	T	4174.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:103,183:0.64:286
chr6	312029	rs150517961	TAATG	T	2922.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:158,83:0.34:241
chr6	335175	rs2671431	A	T	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	335251	rs3757305	T	C	3073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.097;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=2.494;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:167,87:0.34:254
chr6	335251	.	TGT	CGC	2117	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=13;MMLQ=23;MQ=60.0;NF=39;NR=36;PP=2117;QD=28.9395716648;SC=ACTGTGAAGTTGTCAGAGCTC;SbPval=0.51;Source=Platypus;TC=232;TCF=124;TCR=108;TR=75;WE=335261;WS=335241;set=Platypus	GT:AD:AF:DP	1/0:157,75:0.32:232
chr6	335253	rs3757306	T	C	3073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=1.908;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:162,86:0.35:248
chr6	335268	rs4959733	C	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:159,84:0.35:243
chr6	346429	rs10642379	G	GACACACAC	6000.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=804;ExcessHet=3.0103;FS=10.057;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=11.17;ReadPosRankSum=3.518;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:335,202:0.38:537
chr6	346450	.	A	ACACACG	2997	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=28;MQ=59.81;NF=18;NR=177;PP=2997;QD=20;SC=ACACACACACACACACACAGT;SbPval=0.26;Source=Platypus;TC=389;TCF=29;TCR=360;TR=195;WE=346458;WS=346440;set=Platypus	GT:AD:AF:DP	0/1:194,195:0.50:389
chr6	348051	rs1877172	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,30:0.31:97
chr6	348080	rs2797333	A	G	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	348906	rs11242812	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:58,25:0.30:83
chr6	350829	rs1129085	G	A	4538.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:136,216:0.61:352
chr6	350940	rs11408655	T	TA	2135.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:128,76:0.37:204
chr6	367243	rs7776416	T	C	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:122,189:0.61:311
chr6	367352	rs7764099	C	T	10762.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:240,488:0.67:728
chr6	367481	rs7738368	T	G	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:313,222:0.41:535
chr6	367552	rs12527701	C	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.680;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.900;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.419;QD=1.48;ReadPosRankSum=1.274;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:154,29:0.16:183
chr6	391623	rs6935510	C	A	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr6	397055	.	C	CCCCCGTCTCAATGCCAGTGCTTCTTATCTCAGCCTCTCCTGCACTCCTTTACCCCCGTCTCAATGCCAGTGCTTCCTATCTCAGCCT	4145.73	.	AC=1;AF=0.500;AN=2;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;QD=9.85;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:421,0:0:421
chr6	397261	rs34318727	G	A	6582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.77;ReadPosRankSum=-0.114;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:541,210:0.28:751
chr6	397269	rs6942173	T	G	6343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.489;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-1.091;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:448,182:0.29:630
chr6	397290	rs1775589	T	C	2150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.931;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=2.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.241;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:294,111:0.27:405
chr6	398775	rs2671422	G	A	1795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.768;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:123,53:0.30:176
chr6	398783	rs11755347	G	A	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.970;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:129,55:0.30:184
chr6	407629	rs71684525	CT	C	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.295;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.869;QD=1.91;ReadPosRankSum=-0.571;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:72,42:0.37:114
chr6	407656	rs1131442	G	A	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	497520	rs6909878	G	C	4260.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:69,185:0.73:254
chr6	549364	rs2473490	G	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr6	549390	rs2476847	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr6	554045	rs11399543	C	CT	876.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.247;QD=16.54;ReadPosRankSum=0.000;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:4,49:0.92:53
chr6	556147	rs2476844	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	564515	rs2277096	G	T	1022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.32;ReadPosRankSum=1.509;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:34,49:0.59:83
chr6	572480	rs2073009	G	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:42,87:0.67:129
chr6	572714	rs12154040	C	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr6	576902	rs708038	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=-0.770;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr6	597871	rs4960092	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	599042	rs2294664	T	A	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	601244	rs1766844	A	G	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	656143	rs1211554	C	A	5276.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	1053665	rs4960488	T	C	5774.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	1053816	rs12194400	C	T	25926.77	.	AC=2;AF=1.00;AN=2;DB;DP=992;set=Intersection	GT:AD:AF:DP	1/1:0,988:1.00:988
chr6	1101323	rs2076494	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr6	1102488	rs7749569	G	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-1.381;SOR=0.066;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr6	1313117	rs9502889	A	C	1715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=-1.061;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr6	1313121	rs9502890	A	C	1706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.09;ReadPosRankSum=-0.712;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr6	1313952	rs992327	A	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	1313980	rs147255181	C	G	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.258;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	1390276	.	CCCG	C	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=3.919;QD=1.87;ReadPosRankSum=-1.574;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:144,19:0.12:163
chr6	1391085	rs147426137	G	GGGC	6312.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=44.77;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	1395043	rs2293783	T	C	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.052;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:295,98:0.25:393
chr6	1611802	.	G	GGGC	2651.73	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:35,67:0.66:102
chr6	1624512	rs11759759	T	C	4675.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:104,206:0.66:310
chr6	1742794	rs3734739	A	G	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=0.221;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:320,89:0.22:409
chr6	1742908	rs3734740	C	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.325;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=0.221;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr6	2623820	rs6902511	G	A	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=5.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=1.283;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:165,84:0.34:249
chr6	2624053	rs17135340	T	A	2127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=1.858;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:48,99:0.67:147
chr6	2671394	rs1324496	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	2675432	rs138496389	T	TC	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=1.600;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr6	2678750	rs4959699	T	C	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	2679676	rs12523992	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-3.570;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:152,54:0.26:206
chr6	2683439	rs898772	T	A	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	2685677	rs966232	T	C	4465.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=4.562;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	2685904	rs10498657	T	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:53,18:0.25:71
chr6	2689217	rs6930915	A	C	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:41,93:0.69:134
chr6	2689340	rs6935749	T	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	2692876	rs5873836	AG	A	563.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.67;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	2692878	.	G	A	193.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.745;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=0.922;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	2766144	rs17851692	T	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	2766465	rs8333	T	C	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	2766727	rs3757094	A	G	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	2766779	rs3757093	G	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	2783868	rs66922811	C	CTTTT	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=-0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-0.000;QD=15.52;ReadPosRankSum=-1.536;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr6	2784571	rs160703	G	A	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr6	2785112	rs160701	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	2834265	rs386915	C	T	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	2834371	rs3215397	CA	C	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr6	2836266	rs385955	T	A	13432.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=1.111;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr6	2836266	.	TTTTA	ATTTA,ATTTT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=26;MQ=60.0;NF=188,129;NR=126,89;PP=1130,2944;QD=3.70946246034;SC=TTCTGAACAGTTTTAAAAAAT;SbPval=0.54;Source=Platypus;TC=319;TCF=191;TCR=128;TR=314,218;WE=2836278;WS=2836255;set=Platypus	GT:AF:DP	0/1:0.98:319
chr6	2836270	rs13195203	A	T	5877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=0.351;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:99,248:0.71:347
chr6	2838046	rs316339	A	G	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	2838102	rs316340	G	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=-0.887;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:155,74:0.32:229
chr6	2838248	rs316341	G	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	2854299	rs67030829	C	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:76,140:0.65:216
chr6	2948965	rs318426	C	T	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:184,84:0.31:268
chr6	2953252	rs2244693	T	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.320;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:120,39:0.25:159
chr6	2953445	rs3818276	A	G	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-0.495;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:107,30:0.22:137
chr6	2959513	rs2236277	C	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.001;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:337,70:0.17:407
chr6	2966558	rs143603968	G	GT	84.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr6	2966681	rs7751512	C	T	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.241;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	3006807	rs4149360	A	G	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:40,118:0.75:158
chr6	3006859	rs28383616	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=1.062;SOR=1.225;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr6	3010390	rs1143684	C	T	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	3010459	rs2475208	C	T	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.102;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:99,34:0.26:133
chr6	3012725	rs11351160	TG	T	3468.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:27,110:0.80:137
chr6	3015790	rs1049115	A	G	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:77,200:0.72:277
chr6	3019654	rs4149370	T	C	4765.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:81,208:0.72:289
chr6	3019927	rs6955	G	C	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,54:0.82:66
chr6	3076931	rs7755818	A	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.89;QD=42.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	3076933	.	C	CATACATAT	466.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.89;QD=42.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	3077141	rs2272990	T	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	3104696	rs10498658	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr6	3118947	rs2231355	A	G	4303.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	3138194	rs1534998	T	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	3157798	rs909964	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	3157809	rs909965	C	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	3255163	rs11242830	C	T	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	3255327	rs9503497	G	A	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr6	3255340	rs9503498	A	C	7610.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr6	3259463	rs9501962	G	T	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	3263830	rs12193912	C	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	3264101	rs4959785	A	G	5187.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	3264487	rs4959786	T	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr6	3264502	rs4959787	G	C	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr6	3264526	rs4959788	CT	TC	13846.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr6	3264582	rs11757564	G	A	5910.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	3285286	rs10793841	A	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	3287118	rs6910086	T	C	8938.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr6	3298568	rs72839355	C	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr6	3410247	rs2277076	T	C	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,56:0.71:79
chr6	3438738	rs12197689	G	A	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	3439510	rs9503595	T	C	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.58;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	3439595	rs35613438	G	GA	2180.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	3439637	rs9502003	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	3723764	rs1045778	G	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	3727811	rs226959	C	G	9531.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr6	3738897	rs11390464	A	AG	699.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	4020336	rs9392546	C	T	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	4020356	rs9405217	G	A	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	4020540	rs78628853	AT	A	270.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.675;QD=1.09;ReadPosRankSum=-1.644;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:190,58:0.23:248
chr6	4021554	rs11752006	A	G	9624.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr6	4031998	rs9503893	A	G	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	4033065	rs6924389	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	4037458	rs7744603	A	G	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	4037582	rs7763233	C	A	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	4044109	rs12195092	G	A	14024.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,547:1.00:547
chr6	4052167	rs3747761	C	A	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	4052383	rs3747762	G	A	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr6	4052458	rs3833454	G	GT	1369.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	4057233	rs853407	C	T	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	4057429	rs853408	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	4058782	rs12198921	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	4069166	rs595413	C	T	15292.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr6	4119553	rs57858259	AT	A	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.556;QD=1.50;ReadPosRankSum=-1.513;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:59,24:0.29:83
chr6	4126017	rs12207156	C	T	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.688;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.157;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:155,54:0.26:209
chr6	4135394	.	TG	T	846.73	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr6	4715882	rs3812183	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr6	4715894	rs3812182	T	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr6	4715980	rs3812180	C	A	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:49,103:0.68:152
chr6	4716016	rs3812179	A	G	4588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=1.287;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:65,119:0.65:184
chr6	4716037	rs3812178	T	C	5067.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:63,142:0.69:205
chr6	4716150	rs9502225	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:53,102:0.66:155
chr6	4716185	rs9502226	T	C	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,72:0.65:110
chr6	4716258	rs9502227	G	A	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr6	4734804	rs34585929	G	C	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr6	4734868	rs62384814	T	C	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr6	4734882	rs71311001	A	AGTGAGGG	1730.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr6	4734898	rs62384815	A	T	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.083;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.55;ReadPosRankSum=0.761;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:33,55:0.62:88
chr6	4735035	rs13196069	T	C	4264.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:86,200:0.70:286
chr6	4735071	rs28360500	C	G	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:48,136:0.74:184
chr6	4735146	rs35047361	C	T	1483.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:16,58:0.78:74
chr6	4773289	rs6927577	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.351;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.224;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:117,28:0.19:145
chr6	4773330	rs6908435	A	T	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.579;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:205,48:0.19:253
chr6	4936074	rs1539004	T	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	4937662	rs9502253	A	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	4937728	rs36001374	C	CA	1031.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=-3.227;QD=13.76;ReadPosRankSum=1.138;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:13,62:0.83:75
chr6	4937742	rs61406305	C	CT	4712.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	4937747	rs56133250	A	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	4944004	rs200106765	T	TA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=1.219;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr6	4952413	rs2793263	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	4999193	rs396839	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	5000721	rs2764108	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=33.21;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	5000724	rs10631918	C	CT	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=31.86;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	5001577	rs912711	G	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	5003952	rs4960056	T	C	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr6	5086070	rs667752	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	5086211	rs584962	G	C	8752.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr6	5086558	rs436556	C	A	5616.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:75,242:0.76:317
chr6	5109592	rs9606	T	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	5138809	rs11301112	GT	G	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	5139012	rs463054	C	A	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	5148679	.	T	TTCTGAATCGTAATCCTGAGCTGGGCTGGGGGCGCAGAGTCAGAACTCTGAATCGTAATCCTGAGCTGGGCTGGTGGGGCAGAGTCAGAAC	2384.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=12.722;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.59;ReadPosRankSum=4.699;SOR=1.668;set=HC	GT:AD:AF:DP	1/1:19,52:0.73:71
chr6	5148719	rs200871	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	5217010	rs41302851	C	T	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:38,104:0.73:142
chr6	5260816	rs4141761	A	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	5431960	rs10900967	A	G	9726.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr6	5545654	rs7749599	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	5999464	rs3749860	C	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	6003513	rs3792947	A	C	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	6004035	rs3805790	C	A	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.159;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=5.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.03;ReadPosRankSum=-2.038;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:64,108:0.63:172
chr6	6167558	rs199591949	ATTTTT	A	1467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.172;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=15.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=1.147;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:14,44:0.76:58
chr6	6167621	rs435048	G	A	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	6174786	rs380058	G	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	6250967	rs3024370	G	A	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	6305458	rs7745910	G	C	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:41,107:0.72:148
chr6	6305477	rs2295753	C	A	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:54,123:0.69:177
chr6	6318921	rs11414870	G	GA,GAA	979.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.148;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.985;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.798;QD=9.70;ReadPosRankSum=0.026;SOR=0.636;set=HC	GT:AD:AF:DP	1/2:28,41,32:0.41,0.32:101
chr6	6320808	rs2815822	T	G	9242.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr6	6321128	rs1024231	T	C	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=2.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.524;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:322,121:0.27:443
chr6	6588805	rs2233119	G	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	6588881	rs977785	A	C	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	6589192	rs112924538	G	GGA	1613.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	6649974	rs3062400	A	AAGG	1880.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	7181993	rs9392862	T	C	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr6	7211751	rs1334577	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.676;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=6.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-1.125;SOR=1.399;set=HC	GT:AD:AF:DP	0/1:91,31:0.25:122
chr6	7211818	rs1334576	G	A	1250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.833;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=4.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=0.529;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:240,82:0.25:322
chr6	7230680	rs9502564	G	T	4330.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:546,242:0.31:788
chr6	7232186	rs9505086	T	C	928.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:127,50:0.28:177
chr6	7240577	rs2714337	A	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.973;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.012;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr6	7247248	rs2256596	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:159,73:0.31:232
chr6	7295240	rs2714360	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-2.390;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr6	7295300	rs35998405	TA	T	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=1.206;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:78,29:0.27:107
chr6	7295755	rs2714361	G	A	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.109;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:74,26:0.26:100
chr6	7297337	rs78133646	C	T	581.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=1.066;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:4,27:0.87:31
chr6	7298287	rs2714309	G	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:84,35:0.29:119
chr6	7313338	rs62624976	G	C	2951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.770;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:405,184:0.31:589
chr6	7329417	rs62387870	C	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:111,44:0.28:155
chr6	7329873	rs2764095	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	7330194	rs11381590	T	TG	637.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr6	7390369	rs2296358	T	C	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr6	7393452	rs2274212	C	T	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:6,176:0.97:182
chr6	7395497	rs6899625	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	7396836	rs12212766	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	7396887	rs12212772	G	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	7397125	rs150425917	G	GGTGT	985.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr6	7398832	rs2296359	A	G	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	7401382	rs147185967	AAAAC	A	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	7410735	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.17;ReadPosRankSum=-0.527;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:181,32:0.15:213
chr6	7414382	rs2245533	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	7414657	rs4960314	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	7542148	rs17133512	C	CA	1172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.062;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:133,49:0.27:182
chr6	7555854	rs9392904	G	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.131;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:157,49:0.24:206
chr6	7558318	rs10484326	T	C	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.744;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:169,69:0.29:238
chr6	7563983	rs2806234	T	G	7284.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr6	7567970	rs2076296	C	T	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.915;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr6	7571874	rs926411	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr6	7572262	rs2076304	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:138,61:0.31:199
chr6	7574805	rs2259208	C	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	7576527	rs1016835	G	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.043;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:172,50:0.23:222
chr6	7577079	rs2260359	G	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-1.845;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	7577260	rs2064217	C	T	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=1.311;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:68,95:0.58:163
chr6	7577354	rs2064218	C	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	7578819	rs2806229	T	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.718;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:83,32:0.28:115
chr6	7578823	rs2842691	G	A	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.122;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr6	7581636	rs6929069	G	A	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:60,169:0.74:229
chr6	7584617	rs2076300	C	T	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-0.125;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:182,100:0.35:282
chr6	7585967	rs2744380	G	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:151,56:0.27:207
chr6	7590624	rs2757594	C	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr6	7590653	rs2744384	A	G	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	7590802	rs2744385	G	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	7590802	.	GGGGCC	CGGGCC,CGGGCT	285	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=4;HapScore=3;MGOF=6;MMLQ=23;MQ=59.51;NF=6,2;NR=15,6;PP=285,87;QD=15.2272005975;SC=AGGGGCGCCGGGGGCCCTGGA;SbPval=0.56;Source=Platypus;TC=21;TCF=6;TCR=15;TR=21,8;WE=7590815;WS=7590792;set=Platypus	GT:AF:DP	0/1:1.00:21
chr6	7590807	rs2744386	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.954;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr6	7595126	rs12664272	G	A	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr6	7601720	rs3734586	C	T	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:56,89:0.61:145
chr6	7605505	rs9505238	T	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr6	7606255	rs2757597	G	A	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr6	7608863	rs1535433	T	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	7845577	rs2241669	C	T	3341.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:43,148:0.77:191
chr6	7861558	rs200140170	TG	T	59.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr6	7862589	rs17558	C	T	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:71,187:0.72:258
chr6	7862631	rs17557	G	C	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	7879407	rs267172	T	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	7883514	.	GAA	G	5074.73	.	AC=1;AF=0.500;AN=2;DP=244;set=Intersection	GT:AD:AF:DP	0/1:69,159:0.70:228
chr6	7889088	rs1225944	A	G	16318.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:1,624:1.00:625
chr6	7892143	rs1225950	C	G	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	7900028	rs1225954	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	7911062	.	CCGCCCCG	C	278.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	7986654	rs197128	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	7986847	rs197129	G	A	15790.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr6	7988189	rs4959464	T	C	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr6	8016089	rs2057185	C	T	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	8026577	rs9328452	T	C	4603.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	8041545	rs55949249	C	CTTT	194.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=19.49;ReadPosRankSum=-0.493;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:2,8:0.80:10
chr6	8054413	rs2743993	T	C	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	8073858	rs67471655	CAG	C	3103.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	8417521	rs6905235	G	A	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=-1.487;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr6	8435678	.	T	TTCC	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-1.432;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr6	9616231	rs143324041	A	AGAAGAAGAG,AGAAGAAGAAGAG	6757.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=66.06;QD=64.98;SOR=1.925;set=HC	GT:AD:AF:DP	1/2:0,8,96:0.08,0.92:104
chr6	9750730	rs71546885	G	GTAATAATAA	249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.282;QD=27.75;ReadPosRankSum=1.732;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	9795438	rs145138381	AGAG	A	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=6.20;ReadPosRankSum=-0.047;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr6	9795472	.	A	AAGG	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-2.993;QD=3.81;ReadPosRankSum=-0.822;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr6	9795507	rs141334431	AGAG	A	1223.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.68;MQRankSum=-0.134;QD=40.79;ReadPosRankSum=0.231;SOR=0.392;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr6	9845732	rs11968445	C	T	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	9860514	rs150538680	C	CA	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=-0.585;QD=8.63;ReadPosRankSum=0.569;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr6	9922006	rs1925775	A	G	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.38;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	10587038	rs539351	C	G	11738.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr6	10634960	rs34276843	AT	A	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=-2.624;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr6	10724943	rs4711068	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	10729020	rs2153073	C	T	8599.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr6	10764727	rs126405	A	G	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:75,133:0.64:208
chr6	10770206	rs115029448	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr6	10775446	rs478791	T	C	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr6	10784851	.	G	GATCTCGCCCACCCTCTGCAC	1585.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=16.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.82;ReadPosRankSum=0.919;SOR=2.881;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr6	10785011	rs113945134	C	CCAGA	4802.73	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:106,204:0.66:310
chr6	10785227	rs70991044	AAAG	A	3330.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:41,84:0.67:125
chr6	10785263	rs6936890	C	G	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr6	10792197	rs521802	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:17,59:0.78:76
chr6	10802045	rs569418	C	G	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr6	10802101	rs4712966	G	A	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,115:0.64:180
chr6	10814091	rs6909367	A	G	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:92,194:0.68:286
chr6	10819094	rs2272883	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=1.560;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:59,13:0.18:72
chr6	10875238	rs2076257	T	A	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	10876036	rs2076258	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	10882100	rs2153156	G	A	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	10887251	rs9366663	T	C	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	10887251	.	TCG	CCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=23;MQ=60.0;NF=73;NR=22;PP=2947;QD=20;SC=CAGGGCTCTTTCGGCAGCGCC;SbPval=0.54;Source=Platypus;TC=98;TCF=75;TCR=23;TR=95;WE=10887261;WS=10887241;set=Platypus	GT:AD:AF:DP	1/1:3,95:0.97:98
chr6	10887253	rs9358956	G	C	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=2.002;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	10887276	rs9348724	C	G	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	10891651	rs138214707	ATT	A	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.56;ReadPosRankSum=1.691;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr6	10891781	rs1538441	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.30;QD=24.69;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	10891842	.	CTCTCTGTGTGTGTGTGTGTG	C,CTGTGTGTGTGTGTG	2020.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=52;set=Intersection	GT:AF:DP	1/1:1.00:48
chr6	10894255	rs9368453	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:94,37:0.28:131
chr6	10894268	rs6456745	A	G	491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.228;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr6	10898981	rs9357018	A	G	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.019;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr6	10906256	rs4713039	A	G	1173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=1.513;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:30,55:0.65:85
chr6	10911282	rs4713044	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,36:0.78:46
chr6	10924992	rs1225764	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	10931587	rs1225729	T	C	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	10942994	rs34079965	CT	C	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.419;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr6	10955408	rs1225746	C	T	9045.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr6	10955594	rs1225747	T	C	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	10961454	rs2295599	C	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr6	10964194	rs200660369	A	AT	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.275;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr6	10983971	rs4532436	C	G	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:37,82:0.69:119
chr6	10989873	rs5874298	C	CA	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=5.98;ReadPosRankSum=0.292;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr6	10989942	rs12195587	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:127,57:0.31:184
chr6	10990751	rs911196	T	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr6	11005842	rs2295602	T	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:30,74:0.71:104
chr6	11010800	rs9295752	T	G	282.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	11011074	rs9380025	T	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr6	11094571	rs149856795	C	T	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-1.037;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:153,45:0.23:198
chr6	11094681	rs2273884	G	T	2448.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,106:0.98:108
chr6	11094764	rs36067344	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr6	11104251	rs55893495	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:108,45:0.29:153
chr6	11105361	rs55899211	C	T	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:96,68:0.41:164
chr6	11185257	rs10601	A	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	11185533	rs1050775	G	A	7756.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr6	11185967	rs6456968	T	C	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	11190075	rs17495484	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr6	11190626	rs941982	A	G	5301.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	11192522	rs5874310	C	CT	6217.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	11192575	rs1465131	C	T	9195.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr6	11192829	rs112090949	C	CT,CTT	1413.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=24.80;SOR=2.604;set=HC	GT:AD:AF:DP	1/2:0,23,34:0.40,0.60:57
chr6	11193730	rs16871072	A	C	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr6	11194093	.	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=1.613;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr6	11200421	rs2078599	C	T	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	11200574	rs726230	A	C	4862.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:79,217:0.73:296
chr6	11201135	rs3798733	C	G	2607.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:34,102:0.75:136
chr6	11201157	rs3798734	C	T	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:48,163:0.77:211
chr6	11201437	rs9368610	C	T	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	11213468	rs12215094	A	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr6	11213832	rs3734404	T	C	14902.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:258,677:0.72:935
chr6	11232567	rs72827151	C	T	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:61,19:0.24:80
chr6	11233468	rs114587388	T	C	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.187;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:419,147:0.26:566
chr6	11233801	rs72827152	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=1.666;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.477;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:327,64:0.16:391
chr6	11306153	rs16871236	C	T	6969.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	11714639	rs35108078	G	GA	833.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=-0.872;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:35,70:0.67:105
chr6	11714806	rs3734273	G	A	4308.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:92,198:0.68:290
chr6	11723538	rs210905	A	G	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr6	11779088	rs2076189	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,8:0.22:37
chr6	12016009	rs6916066	G	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	12122645	rs6900196	A	G	12055.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr6	12124587	rs2228212	C	G	16515.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr6	12165363	rs219950	C	T	17409.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr6	12290728	rs1800997	TA	T	1048.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	12292772	rs2070699	G	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:63,119:0.65:182
chr6	12294137	rs1800543	T	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:48,33:0.41:81
chr6	12294258	rs5369	A	G	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	12296255	rs5370	G	T	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.044;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:357,128:0.26:485
chr6	13273318	rs202054	A	G	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	13278648	rs3817735	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	13281412	rs3846903	A	G	5036.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:77,227:0.75:304
chr6	13286517	rs617580	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.944;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.848;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr6	13288535	rs202040	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	13288578	rs202039	G	A	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:56,110:0.66:166
chr6	13288648	rs202038	A	G	6891.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	13288679	rs67298859	GCT	G	5587.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:50,149:0.75:199
chr6	13288737	rs202036	T	A	2195.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:29,98:0.77:127
chr6	13288850	rs3734878	C	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	13294866	rs6910418	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr6	13294976	rs20500	G	A	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:193,81:0.30:274
chr6	13295004	rs20499	C	T	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:233,98:0.30:331
chr6	13295502	rs4602719	T	C	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	13295515	rs1550526	A	C	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	13295536	rs454563	C	T	8025.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.74;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr6	13295752	rs35194435	AG	A	1600.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	13307824	rs2439537	C	T	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.357;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:132,45:0.25:177
chr6	13308083	rs2439538	T	C	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.110;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.900;SOR=1.678;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr6	13316658	rs860266	T	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr6	13316780	rs56980190	CA	C	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.530;QD=4.11;ReadPosRankSum=0.624;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:138,110:0.44:248
chr6	13321097	rs2496132	G	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.377;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:167,52:0.24:219
chr6	13325279	rs2439553	C	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.948;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:151,46:0.23:197
chr6	13361088	rs2496162	A	G	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:41,97:0.70:138
chr6	13365913	rs9367440	C	G	4097.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:54,162:0.75:216
chr6	13470113	rs766773	A	T	11421.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr6	13584583	rs2804918	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,59:0.38:156
chr6	13592135	rs3734674	C	T	2030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.626;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:512,153:0.23:665
chr6	13597295	.	C	CA	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=4.401;QD=0.51;ReadPosRankSum=2.038;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:203,38:0.16:241
chr6	13599303	rs3757261	C	T	1034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=2.486;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:169,63:0.27:232
chr6	13794044	rs6922822	T	C	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.677;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:90,29:0.24:119
chr6	13794110	rs4715568	C	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	13800626	rs3215484	TAA	T	2186.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	13801615	rs3180196	T	C	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.55;ReadPosRankSum=2.413;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:92,72:0.44:164
chr6	13814340	rs1204145	T	C	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	15246896	rs12527988	CT	AG	8771.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,219:0.67:329
chr6	15246915	rs12527989	C	G	3979.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:97,174:0.64:271
chr6	15373652	rs11757092	T	A	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	15374508	rs9383050	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.301;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:75,19:0.20:94
chr6	15468876	rs7768621	C	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.249;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.698;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:168,51:0.23:219
chr6	15487782	rs2076056	C	G	9377.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:186,419:0.69:605
chr6	15496662	rs742099	C	T	5363.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:98,242:0.71:340
chr6	15500999	rs13192234	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr6	15501726	rs41267698	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.607;QD=5.65;ReadPosRankSum=-0.070;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr6	15504589	rs760659	T	C	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	15511409	rs35360051	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr6	15511429	rs55742636	C	CCCAT	4765.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	15513482	rs2235258	G	A	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	15513744	rs9396589	G	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr6	15520920	rs112303618	G	GCA	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=4.849;QD=4.44;ReadPosRankSum=1.289;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:149,42:0.22:191
chr6	15533951	rs4236167	C	T	7540.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:160,344:0.68:504
chr6	15546294	rs34253215	C	CT	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.440;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.727;QD=5.07;ReadPosRankSum=-0.287;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:44,41:0.48:85
chr6	15586009	rs6926401	G	T	5107.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	15593240	rs7758659	T	C	1611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-0.451;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:23,73:0.76:96
chr6	15663118	rs11558324	T	C	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.352;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:357,123:0.26:480
chr6	16143265	rs147654236	A	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr6	16143864	rs2072784	A	G	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr6	16143897	rs2072783	A	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr6	16144080	rs34627146	G	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:29,67:0.70:96
chr6	16145325	rs9370867	A	G	5728.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:108,255:0.70:363
chr6	16147098	.	TA	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-0.093;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:33,19:0.37:52
chr6	16246905	rs2274152	G	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,31:0.41:76
chr6	16250758	rs79041224	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:55,25:0.31:80
chr6	16279189	rs739471	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr6	16290761	rs1042391	T	A	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=-0.934;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:291,85:0.23:376
chr6	16290862	rs6926552	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.425;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:97,23:0.19:120
chr6	16326587	rs78115249	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:135,76:0.36:211
chr6	16327615	rs179990	A	G	1724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.180;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:457,133:0.23:590
chr6	16327864	.	G	GTGCTGC	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.600;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.56;ReadPosRankSum=-3.747;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:201,20:0.09:221
chr6	16327915	.	A	ATGC	3724.73	.	AC=1;AF=0.500;AN=2;DP=366;set=Intersection	GT:AD:AF:DP	0/1:86,112:0.57:198
chr6	16753373	.	CAACA	C	478.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.327;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=0.776;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	16753374	.	AAC	A	734	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=4;MGOF=2;MMLQ=28;MQ=60.0;NF=6;NR=2;PP=734;QD=95.125;SC=TTCAACAGCCAACAAAGTAAG;SbPval=0.8;Source=Platypus;TC=12;TCF=8;TCR=4;TR=8;WE=16753386;WS=16753364;set=Platypus	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	16753377	.	AA	GG	707	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=4;MGOF=2;MMLQ=28;MQ=60.0;NF=8;NR=2;PP=707;QD=76.0467874862;SC=AACAGCCAACAAAGTAAGGGA;SbPval=0.64;Source=Platypus;TC=19;TCF=15;TCR=4;TR=10;WE=16753386;WS=16753364;set=Platypus	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	16753378	.	A	AGG	478.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=4.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=0.465;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	17102596	rs1473744	A	G	6539.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.876;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=23.928;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.93;ReadPosRankSum=8.146;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:25,157:0.86:182
chr6	17102600	rs2147230	A	G	6595.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.471;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=26.489;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.65;ReadPosRankSum=8.011;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:25,160:0.86:185
chr6	17115384	rs34224564	G	C	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	17282415	rs1108512	G	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-0.443;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:93,30:0.24:123
chr6	17493690	rs751502	C	G	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	17513954	rs4716146	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	17541484	rs4716155	G	T	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.15;SOR=1.449;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	17541490	rs4716156	G	A	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.75;SOR=1.557;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	17543036	rs2296249	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	17543302	rs9256	A	G	7495.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr6	17606413	rs1969830	C	T	618.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.178;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.244;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.80;ReadPosRankSum=-2.266;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr6	17616493	rs7765156	C	G	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.95;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	17616513	rs3836949	T	TG	335.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.39;ReadPosRankSum=-1.042;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr6	17616556	rs3777712	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-1.248;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr6	17628841	rs11422297	T	TA	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:3,34:0.92:37
chr6	17629616	rs942467	G	A	6329.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	17633061	rs2274136	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	17688798	rs1065057	G	A	5002.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:81,226:0.74:307
chr6	17764530	rs9371018	C	T	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.777;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:184,63:0.26:247
chr6	17777614	rs11396690	C	CT	1277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=2.423;QD=8.94;ReadPosRankSum=-2.119;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:52,91:0.64:143
chr6	17777654	rs1886247	G	A	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:27,65:0.71:92
chr6	17779477	.	TATATATATATA	T	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.97;ReadPosRankSum=-0.000;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	17779731	rs9477524	G	A	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr6	17779973	.	A	T	123	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=18;HapScore=4;MGOF=24;MMLQ=25;MQ=60.0;NF=1;NR=5;PP=123;QD=26.2952020912;SC=GTTATTTTGTATTTTTTTTTT;SbPval=0.66;Source=Platypus;TC=18;TCF=3;TCR=15;TR=6;WE=17779981;WS=17779963;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr6	17785948	rs4716186	A	G	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	17785981	rs10686772	C	CAA	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.220;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr6	17787886	rs148516660	C	CAACAAA	2752.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,66:0.72:92
chr6	17790191	rs2147211	A	G	2250.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:56,99:0.64:155
chr6	17794494	rs3734234	G	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:146,74:0.34:220
chr6	17796774	rs10672591	C	CT	367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.286;QD=7.50;ReadPosRankSum=0.305;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr6	17799575	rs3734235	A	G	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chr6	17799766	rs6459573	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	17800131	rs41267716	G	T	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=0.277;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:221,76:0.26:297
chr6	17809199	rs6913612	G	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	17815716	rs6920106	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr6	17817235	rs9383327	C	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	17821965	rs12205910	A	G	4335.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:99,208:0.68:307
chr6	17825888	rs7771879	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr6	17831419	rs2277080	G	A	8080.77	.	AC=1;AF=0.500;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	0/1:193,374:0.66:567
chr6	17834198	rs4716189	T	G	4806.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:65,121:0.65:186
chr6	17834213	rs4716190	T	C	5383.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:81,152:0.65:233
chr6	17834316	rs4716191	T	C	3774.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:87,175:0.67:262
chr6	17834328	rs4716192	G	A	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:82,158:0.66:240
chr6	17834346	rs4716193	A	G	2883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.957;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:75,135:0.64:210
chr6	17855864	rs624105	G	C	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	17873560	rs41267728	A	C	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=4.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=0.558;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:225,62:0.22:287
chr6	17882140	rs7757737	A	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	18122526	rs115931931	A	G	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:160,69:0.30:229
chr6	18130918	rs1142345	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr6	18132495	rs78846846	G	A	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.48;ReadPosRankSum=2.836;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:53,26:0.33:79
chr6	18134008	rs113956700	G	GA	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=0.660;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,43:0.83:52
chr6	18134021	rs2842949	C	A	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.93;ReadPosRankSum=0.930;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:24,33:0.58:57
chr6	18139214	rs2842934	G	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	18139228	rs1800460	C	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.081;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:92,35:0.28:127
chr6	18139802	rs12201199	A	T	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.451;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.017;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr6	18139964	rs375276814	GA	G	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.397;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:26,17:0.40:43
chr6	18139973	.	ATT	A	455.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.487;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr6	18148019	rs4449636	G	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.517;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr6	18148155	rs368770445	GA	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.811;QD=0.90;ReadPosRankSum=-1.645;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:66,18:0.21:84
chr6	18148247	rs12529220	T	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr6	18149526	rs3930696	C	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr6	18161563	rs4716224	G	A	4663.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:84,205:0.71:289
chr6	18166802	rs912528	T	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	18171477	rs1011620	G	A	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	18187916	rs372534	C	T	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.234;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:54,8:0.13:62
chr6	18188091	rs429158	T	C	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=610;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.198;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:453,153:0.25:606
chr6	18201961	rs214612	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.550;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:71,20:0.22:91
chr6	18208319	rs214596	G	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.727;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:110,30:0.21:140
chr6	18215303	rs214585	T	C	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr6	18226213	rs7740259	C	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr6	18256224	rs58144742	CT	C	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.536;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:23,22:0.49:45
chr6	18258085	rs7743778	A	G	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr6	18368880	rs11757266	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:17,53:0.76:70
chr6	18387692	rs9396858	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	18387768	rs140710411	CTCCTG	C	1032.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr6	18399750	rs2296198	T	C	7169.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr6	18406387	rs6925570	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	18439739	rs2277081	T	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	18572233	rs9396886	A	C	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.054;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:220,85:0.28:305
chr6	19837966	rs1047316	T	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.70;ReadPosRankSum=-0.849;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr6	19837969	rs12662234	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.12;ReadPosRankSum=0.202;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	19838990	rs9460423	C	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr6	20109696	rs2457334	A	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr6	20126285	rs143991776	A	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr6	20144637	rs1202195	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	20212200	.	A	AACAC,AACACAC	1651.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=44.64;SOR=2.012;set=HC	GT:AD:AF:DP	1/2:0,20,17:0.54,0.46:37
chr6	20548795	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-1.450;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr6	20599628	rs9366357	C	T	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=0.198;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:199,65:0.25:264
chr6	20740007	rs9465875	G	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr6	20758704	rs2820000	A	G	483.96	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr6	20758808	rs34291318	GT	G	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.240;QD=2.80;ReadPosRankSum=-0.037;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:59,28:0.32:87
chr6	20758943	rs2820001	G	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:24,59:0.71:83
chr6	21065450	rs56087852	A	G	9658.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr6	22136879	rs6921113	G	T	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.523;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:367,123:0.25:490
chr6	22136938	rs6900792	T	C	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.856;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:204,68:0.25:272
chr6	22147248	.	C	T	1050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.23;ReadPosRankSum=0.181;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,47:0.77:61
chr6	22147343	.	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.438;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr6	22292976	rs1205955	A	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	22570189	rs6922960	T	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr6	22570245	rs6900627	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr6	24146454	rs16888718	C	T	4931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=1.170;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:102,236:0.70:338
chr6	24174955	rs9358755	G	C	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	24291203	rs2274305	T	C	10962.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr6	24302087	rs807703	G	A	11488.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,410:1.00:412
chr6	24302287	rs200146922	G	A	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=1.278;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:142,43:0.23:185
chr6	24353742	rs813227	A	G	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=-0.379;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:43,93:0.68:136
chr6	24357796	rs33943110	G	A	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:274,120:0.30:394
chr6	24418348	rs2793422	G	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	24418581	rs2753925	A	T	359.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr6	24423824	rs35261004	C	T	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.589;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:154,54:0.26:208
chr6	24437445	rs1772256	G	A	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr6	24437458	rs1042303	T	C	8221.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	24445718	rs793714	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	24448061	rs796985	A	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	24454363	rs61748578	G	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:115,44:0.28:159
chr6	24460679	rs2793434	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	24460707	rs2744576	A	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	24463055	rs2793442	A	G	6508.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	24467633	rs2793445	C	T	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	24474018	rs35864956	G	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	24475517	rs66707391	TATTA	T	6135.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	24476553	rs760904	G	A	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	24505196	rs62621664	G	T	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:268,115:0.30:383
chr6	24515330	.	CTT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.501;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chr6	24554672	rs56150817	G	A	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.375;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:194,56:0.22:250
chr6	24556675	rs807538	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	24559433	rs3903801	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	24583804	rs6901322	T	A	2997.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:73,139:0.66:212
chr6	24596478	rs4576240	T	G	18382.77	.	AC=2;AF=1.00;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr6	24596522	.	G	A	2974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DP=696;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=2.166;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:503,190:0.27:693
chr6	24651320	rs3181245	C	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.481;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chr6	24651352	rs11370284	T	TA	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.500;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.833;QD=7.63;ReadPosRankSum=-0.596;SOR=0.115;set=HC	GT:AD:AF:DP	0/1:9,16:0.64:25
chr6	24651388	rs3181244	G	A	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr6	24653376	rs1129644	G	A	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	24657964	rs3212231	T	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.90;ReadPosRankSum=-0.081;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	24659071	rs2143340	A	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:17,52:0.75:69
chr6	24666320	rs11456603	T	TA	1697.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:49,97:0.66:146
chr6	24667205	rs17243164	T	TCC	10168.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	24667662	rs3181228	C	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=6.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.967;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chr6	24687765	rs926529	A	G	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	24698215	rs7765904	G	A	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=1.426;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.893;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:259,95:0.27:354
chr6	24781025	rs2245409	A	G	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:42,116:0.73:158
chr6	24784910	rs45458398	C	T	374.28	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr6	24797647	rs2251702	A	G	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:67,215:0.76:282
chr6	24806594	rs9358799	C	T	1359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=1.614;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:293,94:0.24:387
chr6	24806739	rs5875006	C	CTT	1541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=-1.473;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:131,47:0.26:178
chr6	24806752	rs4074420	A	C	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-1.034;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr6	24806777	rs9379689	T	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.877;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr6	24809771	rs9379692	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	24809853	rs9393587	C	T	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	24809874	rs55640933	A	C	5728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.890;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=1.558;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:98,250:0.72:348
chr6	24809881	rs9358801	T	A	14573.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.76;SOR=1.182;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr6	24818785	rs9358802	A	G	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:17,77:0.82:94
chr6	24825511	rs9358804	A	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	24828318	rs35374726	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	24828560	rs45437991	A	G	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-1.443;QD=6.34;ReadPosRankSum=-0.119;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr6	24828566	rs72205632	CCATT	C,CCATTCATT	3046.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=114;MQ=60.57;set=Intersection	GT:AF:DP	1/2:0.35,0.64:84
chr6	24836161	rs6901565	C	A	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	24839746	rs72839911	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-1.007;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:146,26:0.15:172
chr6	24850715	rs7761191	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr6	24852751	rs9467333	C	A	6911.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:185,316:0.63:501
chr6	24852962	rs4421189	T	C	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:38,105:0.73:143
chr6	24869300	rs2817747	T	C	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:87,200:0.70:287
chr6	24871021	rs2817748	C	A	6376.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:117,284:0.71:401
chr6	24871032	rs2817749	G	A	7000.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:142,322:0.69:464
chr6	25042286	rs35331447	TA	T	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.653;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr6	25082262	rs12197057	T	G	43.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr6	25084691	rs303007	C	T	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	25084718	rs303006	A	G	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,206:1.00:207
chr6	25086968	rs895673	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.311;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-1.442;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:69,15:0.18:84
chr6	25092031	rs9654585	T	A	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr6	25097450	rs392852	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	25106745	rs2295737	A	G	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	25106783	rs1923195	G	A	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	25108989	rs3215685	AC	A	5564.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	25108991	rs79916468	C	T	5573.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	25115296	rs2273671	G	T	2038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=0.404;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:52,96:0.65:148
chr6	25279839	rs377675604	CT	C	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.076;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr6	25280119	rs6914799	C	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=6.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=-0.855;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr6	25420344	rs913455	C	G	8542.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr6	25426640	.	ATT	A,AT	3423.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=1.260;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=2.220;SOR=0.549;set=HC	GT:AD:AF:DP	1/2:10,126,64:0.63,0.32:200
chr6	25435548	rs10946781	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr6	25435758	rs9467515	A	G	8227.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	25450026	rs9295661	C	A	201.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	25450104	rs10214744	G	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr6	25450488	rs146409780	G	A	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:35,130:0.79:165
chr6	25452220	rs6934330	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.952;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr6	25452223	rs11368778	T	TC	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.62;ReadPosRankSum=1.127;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr6	25471559	rs144894905	G	GT	559.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=10.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.334;SOR=2.331;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr6	25482676	rs7454031	A	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.972;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=6.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=1.407;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	25492296	rs1034051	C	T	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	25510648	rs7453991	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	25527963	rs214053	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr6	25554148	rs2072849	T	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-1.792;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:83,23:0.22:106
chr6	25554180	rs214049	C	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	25557149	rs57318254	T	TAA	1232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.89;ReadPosRankSum=-3.215;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:24,49:0.67:73
chr6	25581366	rs79588470	T	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:143,63:0.31:206
chr6	25600968	rs10456324	G	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr6	25605091	rs1012899	G	A	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	25606181	rs2294345	G	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr6	25610203	rs11962024	A	T	4556.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:76,211:0.74:287
chr6	25619581	rs3747526	C	A	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=-1.620;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr6	25652568	rs3215471	AG	A	3390.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:41,108:0.72:149
chr6	25653566	rs34327841	T	TA	1137.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr6	25653842	rs1406927	T	G	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr6	25661887	rs2072847	A	T	5887.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:76,249:0.77:325
chr6	25665041	rs12213891	C	T	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,40:0.74:54
chr6	25669636	rs2064127	A	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:4,44:0.92:48
chr6	25682262	rs3765236	A	C	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr6	25689378	.	A	AT	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-2.014;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:170,45:0.21:215
chr6	25701691	rs6928384	C	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	25726343	rs6940348	C	T	7247.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.951;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr6	25769349	rs1892251	T	C	8767.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr6	25770239	rs2328893	A	G	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr6	25776949	rs11754288	G	A	10271.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr6	25778055	rs12201071	C	T	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	25801057	rs1165210	T	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	26017617	rs34541321	G	A	8163.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:138,341:0.71:479
chr6	26017675	rs62000984	A	G	12598.77	.	AC=1;AF=0.500;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	0/1:222,545:0.71:767
chr6	26020936	rs2229766	C	T	9173.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:170,423:0.71:593
chr6	26021813	rs9467664	A	T	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:24,81:0.77:105
chr6	26031868	rs2213284	G	A	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:70,201:0.74:271
chr6	26033506	rs2230655	G	A	4963.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:77,223:0.74:300
chr6	26033641	rs2230654	G	A	6229.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:115,258:0.69:373
chr6	26033809	rs3842706	T	TAAG	14439.73	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:145,357:0.71:502
chr6	26044369	rs2032447	A	G	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=-0.132;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:47,104:0.69:151
chr6	26045929	rs3752416	T	C	7260.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:126,332:0.72:458
chr6	26046158	rs11755492	T	C	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr6	26056549	rs10425	A	G	5463.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:66,237:0.78:303
chr6	26093236	rs1800758	G	A	2062.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr6	26094367	rs1572982	G	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr6	26104057	rs198854	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-0.239;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	26104071	rs10636318	G	GA,GAAAA	1151.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=32.91;ReadPosRankSum=1.316;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:1,12,22:0.34,0.63:35
chr6	26104096	rs198853	T	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.608;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:47,24:0.34:71
chr6	26104448	rs198852	A	G	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=1.990;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:157,55:0.26:212
chr6	26107790	rs198845	G	T	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.039;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:188,68:0.27:256
chr6	26108282	rs198844	C	G	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr6	26123629	rs198821	T	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:97,42:0.30:139
chr6	26124243	rs198820	G	A	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr6	26124430	rs198819	C	T	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=2.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=-0.951;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:282,78:0.22:360
chr6	26184083	rs141005448	C	T	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.001;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.637;QD=3.73;ReadPosRankSum=1.527;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:491,165:0.25:656
chr6	26184102	rs7766641	G	A	2924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=1.191;QD=4.15;ReadPosRankSum=0.262;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:519,185:0.26:704
chr6	26199524	rs438534	A	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	26200083	rs1059486	A	G	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.620;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:495,174:0.26:669
chr6	26205186	.	G	A	5286.77	.	AC=1;AF=0.500;AN=2;DP=322;set=Intersection	GT:AD:AF:DP	0/1:90,228:0.72:318
chr6	26240624	rs3734533	A	G	1844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=2.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-2.099;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:289,108:0.27:397
chr6	26240649	rs3734534	C	T	2273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.325;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:377,139:0.27:516
chr6	26247198	rs41266821	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:96,41:0.30:137
chr6	26250254	rs11759720	C	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.555;SOR=1.361;set=HC	GT:AD:AF:DP	0/1:42,8:0.16:50
chr6	26271713	rs9393690	A	T	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	26285503	rs41266829	C	T	4006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095;ClippingRankSum=0.000;DB;DP=911;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=0.121;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:650,256:0.28:906
chr6	26285560	rs2393592	A	G	25388.77	.	AC=2;AF=1.00;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	1/1:0,951:1.00:951
chr6	26285683	rs2393593	T	C	21620.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr6	26285759	rs41266831	A	G	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.305;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-1.340;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:290,101:0.26:391
chr6	26285867	rs3999544	C	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	26365595	rs12203176	T	C	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=1.728;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:315,115:0.27:430
chr6	26365702	.	C	CTGTGTG	622.73	.	AC=2;AF=1.00;AN=2;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.60;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	26368938	rs76764747	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.120;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=47.65;MQRankSum=-5.574;QD=3.96;ReadPosRankSum=-0.922;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:100,29:0.22:129
chr6	26370605	rs9379860	T	C	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:291,120:0.29:411
chr6	26370707	rs9379862	T	C	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.537;QD=3.20;ReadPosRankSum=-1.056;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:364,113:0.24:477
chr6	26370748	rs35183513	G	A	2235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.408;QD=4.01;ReadPosRankSum=-1.783;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:415,143:0.26:558
chr6	26370920	rs55827419	T	C	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.258;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:137,52:0.28:189
chr6	26374658	rs2073526	G	A	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.655;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:123,40:0.25:163
chr6	26390830	rs2076029	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.136;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr6	26390963	rs41266835	C	T	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.169;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:159,71:0.31:230
chr6	26391005	rs17537465	C	A	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:104,45:0.30:149
chr6	26393021	rs1614887	G	A	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.805;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=1.041;QD=4.60;ReadPosRankSum=-0.614;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:187,67:0.26:254
chr6	26405835	rs56161420	G	A	2020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.863;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:316,127:0.29:443
chr6	26405990	rs17610161	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:115,49:0.30:164
chr6	26406255	rs3857550	G	A	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.264;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=10.444;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=-2.122;QD=3.21;ReadPosRankSum=-2.050;SOR=1.694;set=HC	GT:AD:AF:DP	0/1:146,37:0.20:183
chr6	26410227	rs7770214	G	A	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.738;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:456,148:0.25:604
chr6	26411483	rs10946821	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr6	26411895	rs12214924	T	C	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:324,138:0.30:462
chr6	26411963	rs12214976	T	A	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:179,80:0.31:259
chr6	26411987	rs28571747	T	C	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=5.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.046;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:128,53:0.29:181
chr6	26413088	rs6900725	T	C	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-2.469;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:89,43:0.33:132
chr6	26413164	rs34577398	CAG	C	143.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr6	26413368	rs6901245	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.414;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.250;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr6	26413744	rs4712990	C	A	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=1.611;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:193,57:0.23:250
chr6	26413975	rs56190518	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-1.919;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:159,35:0.18:194
chr6	26414060	rs56325223	G	T	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.037;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:130,38:0.23:168
chr6	26422206	rs55786210	A	G	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=11.889;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=-1.970;QD=4.26;ReadPosRankSum=0.078;SOR=0.196;set=HC	GT:AD:AF:DP	0/1:113,45:0.28:158
chr6	26422260	rs1796522	G	A	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.283;MLEAC=1;MLEAF=0.500;MQ=51.24;MQRankSum=-3.152;QD=2.59;ReadPosRankSum=1.261;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:263,73:0.22:336
chr6	26422307	rs56182232	G	T	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.67;MQRankSum=-9.101;QD=1.40;ReadPosRankSum=0.521;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:474,95:0.17:569
chr6	26422336	rs55994013	T	C	1749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.184;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.33;MQRankSum=-12.420;QD=2.83;ReadPosRankSum=0.916;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:532,87:0.14:619
chr6	26422354	rs55775018	C	T	1508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.725;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.809;MLEAC=1;MLEAF=0.500;MQ=54.07;MQRankSum=-12.320;QD=2.41;ReadPosRankSum=0.065;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:549,78:0.12:627
chr6	26422387	rs141260282	C	CCTTCCTCCTCCT	731.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.093;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-16.531;QD=1.38;ReadPosRankSum=-5.545;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:468,63:0.12:531
chr6	26422519	rs111293349	T	C	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.211;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-4.266;QD=6.10;ReadPosRankSum=0.515;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr6	26422527	rs141119405	TC	T	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:57,18:0.24:75
chr6	26423090	rs12191917	C	T	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.248;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:396,118:0.23:514
chr6	26423154	rs12198993	T	C	2790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=930;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.015;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:709,217:0.23:926
chr6	26423317	rs7745238	G	A	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:217,102:0.32:319
chr6	26423560	rs4320356	C	T	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.227;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:113,28:0.20:141
chr6	26426316	rs10946828	T	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr6	26426487	rs10946829	G	A	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.785;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-2.483;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:461,139:0.23:600
chr6	26428314	rs12201546	G	A	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=5.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-1.839;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:85,37:0.30:122
chr6	26428842	rs1741740	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	26430981	rs2893848	A	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.437;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:142,54:0.28:196
chr6	26431340	rs45499696	A	G	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.670;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:222,89:0.29:311
chr6	26443853	rs56036950	C	A	2217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=49.55;MQRankSum=-5.713;QD=3.33;ReadPosRankSum=0.278;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:503,162:0.24:665
chr6	26444168	rs143665311	C	T	1982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-3.972;QD=3.24;ReadPosRankSum=0.556;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:473,139:0.23:612
chr6	26445860	rs3846847	C	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:109,40:0.27:149
chr6	26446209	rs3846848	C	T	2659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.430;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:409,166:0.29:575
chr6	26463321	rs3734540	A	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr6	26463416	rs76715864	A	C	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:45,79:0.64:124
chr6	26466225	rs1977198	A	C	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=2.558;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:39,155:0.80:194
chr6	26466234	rs4712999	A	G	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.485;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:146,31:0.18:177
chr6	26501471	rs3215660	AG	A	1470.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr6	26501777	rs2255070	C	G	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:30,86:0.74:116
chr6	26501828	rs41311633	C	T	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:51,170:0.77:221
chr6	26501897	rs1321479	T	C	4521.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:61,199:0.77:260
chr6	26505135	rs3736780	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	26505362	rs3736781	G	A	4814.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:97,217:0.69:314
chr6	26505403	rs3736782	C	A	4525.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:109,206:0.65:315
chr6	26509330	rs9393728	C	G	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:32,97:0.75:129
chr6	26509474	rs150868691	C	T	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=-1.164;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr6	26545308	rs1884946	C	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr6	26545632	rs4871	G	A	2571.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:36,110:0.75:146
chr6	26597333	rs3800302	A	G	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:50,124:0.71:174
chr6	26598188	rs3800303	A	G	5029.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:92,228:0.71:320
chr6	27115084	rs147640519	G	C	3279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=702;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-2.253;QD=4.68;ReadPosRankSum=-0.629;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:503,198:0.28:701
chr6	27216848	rs1234145	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	27277402	rs6456773	C	T	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	27279852	rs2235233	T	C	13925.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr6	27326863	rs2235232	G	A	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr6	27327349	rs9357037	C	G	6023.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:91,260:0.74:351
chr6	27327607	rs34125661	GT	G	1908.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:51,117:0.70:168
chr6	27356527	rs13220817	T	C	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	27356867	rs4713091	A	G	14703.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr6	27356902	rs10807020	A	G	1545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.481;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:436,120:0.22:556
chr6	27356925	rs10807021	T	G	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=2.021;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:375,107:0.22:482
chr6	27357308	rs6904883	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:58,19:0.25:77
chr6	27425185	rs1883216	C	A	1732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.027;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:233,106:0.31:339
chr6	27435707	rs2272814	G	A	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.022;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:92,37:0.29:129
chr6	27440004	rs7750795	A	C	2619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.054;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:456,174:0.28:630
chr6	27792221	rs200499	C	T	16260.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.67;QD=44.43;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,366:1.00:366
chr6	27792228	rs200498	T	C	16303.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.97;QD=44.18;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,369:1.00:369
chr6	27879715	rs201539002	C	T	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:33,168:0.84:201
chr6	28198122	rs76542212	C	T	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,79:0.73:108
chr6	28214646	rs62401443	T	C	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.091;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:248,90:0.27:338
chr6	28228342	rs1679709	A	G	7431.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr6	28239932	rs61622742	T	TG	7918.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	28265593	.	G	GTT	45.70	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	30859335	.	A	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=34.79;MQRankSum=-3.519;QD=15.94;ReadPosRankSum=1.587;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr6	31236836	rs41289069	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.84;QD=24.39;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	31236899	rs193100294	A	G	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.04;QD=33.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	31236904	.	T	C	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=38.01;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	32487390	rs77180119	T	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32487398	rs115198947	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32487402	rs114131132	C	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32487439	.	GG	AC	62.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32487451	rs189471149	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32487458	rs114645980	C	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489876	rs41546317	T	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489877	rs138849995	C	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489881	rs202185589	G	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489883	rs142793258	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489887	rs202197820	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489923	rs1136762	C	T	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489927	rs1136760	T	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489933	.	T	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489934	.	C	G	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489939	.	T	C	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489940	rs1071747	G	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489980	rs112326475	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32489985	rs111522006	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32497870	rs71549218	A	G	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.55;QD=22.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32497905	rs71549219	G	T	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32497917	rs71549220	C	A	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.55;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32497943	rs17211043	A	G	143.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.69;QD=28.78;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	32497959	.	GCT	G	53.70	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.05;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32497962	.	T	TGC	53.70	.	AC=2;AF=1.00;ALERT;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.05;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32546670	rs34981130	C	T	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	32546818	rs36217730	C	T	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	32546828	rs1064697	C	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	32546832	rs36217728	G	A	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	32546838	rs1064694	A	G	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	32546940	rs72847691	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	32546978	rs72847693	A	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=41.24;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	32546986	rs9269698	G	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=44.32;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	32547029	rs9281864	A	AGC	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	32548068	rs4498414	T	A	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=26.00;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	32548122	rs4448132	C	G	1087.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;MQRankSum=3.528;QD=22.66;ReadPosRankSum=0.026;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr6	32548161	rs112461335	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.22;QD=25.07;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	32548170	.	A	AGGGCAGAAAG	455.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	32548188	rs113128041	A	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=23.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	32549501	rs78466762	A	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32549596	rs2308759	T	C	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.54;QD=26.20;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	32549611	rs1071752	T	C	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.75;QD=43.66;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	32549613	rs17882084	GG	CA	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=46.75;QD=43.66;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	32549627	rs199927008	AC	CA	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=47.94;QD=43.08;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	32549631	rs72500538	C	T	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.50;QD=44.57;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	32549638	rs72850244	G	A	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.93;QD=43.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	32549711	rs9269814	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	32551995	rs17853229	A	G	454.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=45.48;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	32551998	rs17853228	G	A	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.68;QD=38.12;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	32552029	rs17884945	A	T	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	32552067	rs17882603	C	T	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.87;QD=24.49;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	32552078	rs17882300	A	T	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.77;QD=45.15;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	32552080	rs3175105	T	C	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.70;QD=44.75;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	32552085	rs1059575	G	T	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.70;QD=44.97;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	32552091	.	G	C	5175.77	.	AC=2;AF=1.00;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.47;QD=44.24;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	32552127	rs17885011	C	T	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.06;QD=43.86;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr6	32552130	rs9269951	CCT	AAA	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.28;QD=45.50;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	32552137	rs17878703	G	A	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.63;QD=46.24;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	32552147	rs9269960	G	A	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.51;QD=47.00;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	32552171	rs41285655	C	G	1911.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.89;QD=45.52;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	32552171	.	CC	GG	1612	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=1;MGOF=160;MMLQ=23;MQ=41.76;NF=8;NR=27;PP=1612;QD=47.5847964246;SC=GGGACACGAACCATCCGGTCA;SbPval=0.55;Source=Platypus;TC=35;TCF=8;TCR=27;TR=35;WE=32552196;WS=32552161;set=Platypus	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	32552172	rs9269961	C	G	1861.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.89;QD=44.33;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	32552183	rs28986202	A	AC	1218.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	32552188	rs112353158	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.94;QD=60.36;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	32552206	rs9269963	G	T	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=36.31;QD=29.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	32552237	rs9269966	A	G	172.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.18;QD=34.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	32552240	rs28724111	G	A	172.90	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.54;QD=57.63;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	32552251	rs9269968	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.05;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32552253	rs149553038	T	TG	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.05;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32557435	rs9270299	A	C	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=26.55;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	32606597	rs34310302	AT	A	115	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	32606793	rs28437906	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.45;QD=24.18;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	32606878	rs9272544	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	32609061	rs28654242	T	A	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	32609173	rs10093	C	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	32609371	rs4467816	T	C	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	32610152	rs202014999	C	CTT	411.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;QD=25.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	32610436	rs1048372	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	32610461	rs9260	A	G	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	32610689	rs9272843	C	G	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	32610704	rs9272851	T	C	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	32610757	rs8227	A	G	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	32610769	rs7600	A	C	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	32610887	rs7143	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	32611054	rs28376734	T	C	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	32627798	rs1071641	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	32627807	rs1049122	A	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	32627882	rs1071639	C	T	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;MQ=57.33;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	32627956	rs1063347	C	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=43.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	32627956	.	CAT	GAC	779	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=53;MMLQ=28;MQ=59.24;NF=14;NR=10;PP=779;QD=34.6861614526;SC=TCTGGGCAGGCATAAGCAGGC;SbPval=0.56;Source=Platypus;TC=24;TCF=14;TCR=10;TR=24;WE=32627966;WS=32627946;set=Platypus	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	32627958	rs7656	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=43.99;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	32627988	rs1049178	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=43.95;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	32627991	rs1049177	C	T	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=43.95;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	32628001	rs1049175	T	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=47.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	32628045	rs9273472	C	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	32628543	rs34736308	T	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,45:0.98:46
chr6	32628828	rs68081734	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	32628841	rs9273546	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	32629129	rs1130432	T	C	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32629155	rs1130431	C	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	32629240	rs9273671	G	A	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	32629247	rs9279979	A	AC	2707.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	32629257	rs9273677	T	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	32629320	rs9273713	A	G	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	32629346	rs9273723	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	32629380	rs9273742	A	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=42.12;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	32629385	rs71542428	C	A	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=43.44;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	32629408	rs72844321	AA	GG	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;JOINED;MQ=59.39;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	32629603	rs9273852	T	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.79;QD=40.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32629612	rs9273855	G	A	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.34;QD=45.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	32629614	rs9273857	A	T	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.01;QD=41.08;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	32629708	rs33980016	T	TG	3204.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	32629718	rs36233043	G	A	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	32629737	rs9273912	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.79;QD=27.43;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	32629847	rs1049133	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	32629859	rs1049130	A	G	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.97;QD=43.91;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	32629868	rs1049088	A	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.00;QD=44.34;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	32629936	rs1049107	C	T	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	32629963	rs1049100	C	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	32630028	rs68027833	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	32630055	rs9274045	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.82;QD=41.57;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	32630066	rs71542429	T	C	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.23;QD=43.77;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	32630073	rs9274050	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.50;QD=43.72;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	32630080	rs9274053	C	G	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.93;QD=43.34;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	32630087	rs71542430	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.93;QD=43.34;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	32630101	rs28724259	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.24;QD=46.20;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	32630112	rs9282139	G	GA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=45.97;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	32630139	rs9274084	G	C	131.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=32.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	32630159	rs9274096	A	C	97.28	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=48.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32632426	rs70996721	GC	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32632436	.	C	CT	277.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=39.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32632438	rs281862200	C	A	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	32632446	rs28746788	G	A	376.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.10;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	32632447	rs41263822	C	A	376.78	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.10;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	32632453	rs9274356	T	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.10;QD=41.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	32632470	rs9274359	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.25;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	32632474	rs9274360	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.32;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	32632483	rs9274361	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.45;QD=51.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	32632492	rs9274363	A	G	781.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.80;QD=45.99;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	32632493	.	CCT	C	862.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=47.93;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	32632498	.	C	CAA	952.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.29;QD=47.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	32632515	rs41263824	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.92;QD=44.17;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	32632523	rs9274369	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.09;QD=44.29;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	32632527	rs9274370	C	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.15;QD=44.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	32632529	rs71542465	G	A	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.15;QD=49.58;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	32632534	rs28746795	T	C	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=48.70;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	32632542	rs74199853	G	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=39.84;SOR=1.999;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	32632587	rs1130397	A	G	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	32632598	rs17412833	A	T	7668.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	32632628	rs1130392	G	C	11548.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=45.11;SOR=1.013;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr6	32632635	rs9274384	A	C	6978.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;MQRankSum=-0.236;QD=26.64;ReadPosRankSum=-2.432;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:2,260:0.99:262
chr6	32632637	rs1130387	TC	GA	12364.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=46.84;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr6	32632647	rs1130390	T	C	7642.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.05;MQRankSum=-0.374;QD=26.08;ReadPosRankSum=0.746;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:2,291:0.99:293
chr6	32632688	rs1071637	T	A	13186.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr6	32632711	rs1049074	C	T	12003.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.70;QD=44.79;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr6	32632714	rs3210148	G	C	11913.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.61;QD=45.65;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	32632745	rs1063318	G	A	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr6	32632770	rs1049069	A	G	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	32632781	rs1049066	AGA	CCC	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	32632818	rs1130368	T	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.94;QD=34.64;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	32632832	rs9274407	A	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.64;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	32632859	rs74186130	C	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.53;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32632864	rs9274409	G	A	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.53;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32632878	.	C	CAGCCTGGCCCT	98.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.70;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	32632886	.	C	CTG	53.70	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.28;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32632892	rs200624488	CCG	C	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.28;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	32634188	rs67955939	T	C	362.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	32634192	rs9274512	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	32634226	rs68033958	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	32634263	rs66957194	GC	TT	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	32634302	rs1049062	AG	GA	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.27;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	32634313	rs1049059	C	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=43.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	32634369	rs1049056	C	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	32634387	rs1049055	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	32634405	rs1049053	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	32634426	rs67147537	G	A	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.04;QD=24.81;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	32634485	rs9274526	A	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=25.49;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	32634505	rs71542466	C	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.92;QD=42.32;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	32634508	rs9274528	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.92;QD=42.32;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	32634564	rs202167390	A	AT	93.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	33382288	rs3116713	G	A	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.29;QD=29.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	33408465	rs138475712	TTC	T	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=47.56;MQRankSum=-1.933;QD=5.77;ReadPosRankSum=1.652;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr6	33541719	rs513349	A	G	17167.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr6	33542172	rs210136	A	T	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr6	33542478	rs210137	C	T	2272.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:19,95:0.83:114
chr6	33543693	rs4987115	G	A	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-2.029;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:209,70:0.25:279
chr6	33553563	rs192540088	G	A	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr6	33553580	rs394199	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr6	33560896	rs210162	A	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	33561164	rs210163	C	T	14239.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:2,556:1.00:558
chr6	33608379	rs4713647	T	C	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	33625696	rs2274200	T	C	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.126;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:308,102:0.25:410
chr6	33630624	rs2296339	C	T	3745.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:65,164:0.72:229
chr6	33630816	rs2296338	G	A	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	33630846	rs9366827	A	G	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	33631155	rs5875457	TGGGAGG	T	3899.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	33631163	rs3068491	T	C	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	33631640	rs2229631	C	T	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=3.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.385;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:168,65:0.28:233
chr6	33632618	rs55994614	C	T	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:57,109:0.66:166
chr6	33635116	rs76635845	CA	C	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.056;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:56,15:0.21:71
chr6	33636232	rs9380372	T	C	17748.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr6	33641956	rs7769838	T	C	16591.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr6	33643558	rs2229637	G	A	5540.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:71,245:0.78:316
chr6	33644768	rs2068236	T	C	5732.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	33644773	rs4713652	T	A	5806.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	33645457	rs9469552	C	G	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	33646328	rs2274195	T	C	5950.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr6	33646375	rs116454384	C	T	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.328;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=9.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=1.784;SOR=1.766;set=HC	GT:AD:AF:DP	0/1:191,64:0.25:255
chr6	33647594	rs4713653	C	A	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:83,148:0.64:231
chr6	33647651	rs4713654	A	G	6141.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:108,286:0.73:394
chr6	33648097	rs9469554	A	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:112,56:0.33:168
chr6	33648228	rs2229638	C	T	11878.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr6	33650430	rs2296331	G	C	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.177;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:324,90:0.22:414
chr6	33651277	rs2296328	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,17:0.27:62
chr6	33651975	rs35095444	C	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:40,14:0.26:54
chr6	33653111	rs942637	T	C	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	33653448	rs749338	C	T	4286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-1.022;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:128,208:0.62:336
chr6	33654378	rs4640882	A	G	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	33654897	rs942642	T	C	8387.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr6	33655173	rs2281916	T	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	33655728	rs2281917	G	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr6	33656250	rs2296736	T	C	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr6	33656416	rs2296737	G	A	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:164,88:0.35:252
chr6	33656654	rs11759396	C	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,73:0.65:113
chr6	33656969	rs2296739	G	A	3854.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:59,167:0.74:226
chr6	33657246	rs3818521	C	T	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:126,257:0.67:383
chr6	33658066	rs764752	G	C	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:32,98:0.75:130
chr6	33659472	rs2229642	C	G	5462.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:72,234:0.76:306
chr6	33659536	rs2296740	A	G	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:112,240:0.68:352
chr6	33659550	rs36034973	C	CG	5970.73	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:123,267:0.68:390
chr6	33659557	rs2296741	C	T	11360.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:134,284:0.68:418
chr6	33659793	rs2296742	G	A	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:31,113:0.78:144
chr6	33660411	rs653536	T	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	33660695	rs3818524	G	C	2968.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:46,124:0.73:170
chr6	33661222	rs3818530	C	G	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr6	33668370	rs942643	A	G	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr6	33679596	rs2274458	A	C	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,47:0.64:74
chr6	33690691	rs36101795	C	T	4839.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:92,226:0.71:318
chr6	33690796	rs4713668	CA	TG	7025.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;JOINED;set=Intersection	GT:AD:AF:DP	0/1:108,175:0.62:283
chr6	33696131	rs13204162	C	T	1125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.873;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-3.943;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:183,67:0.27:250
chr6	33740325	rs11755593	G	C	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:62,117:0.65:179
chr6	33740382	rs2296744	G	A	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:290,131:0.31:421
chr6	33740592	rs4711349	C	T	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:81,35:0.30:116
chr6	33748831	rs2182658	T	G	6229.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,223:1.00:224
chr6	33748937	rs3833665	G	GA	5374.73	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:108,278:0.72:386
chr6	33752013	rs943479	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr6	33754396	rs9394167	A	G	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr6	33756026	rs6457741	C	T	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:77,34:0.31:111
chr6	33756532	rs13213889	G	A	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.569;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr6	33762625	rs11758463	A	G	3939.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:83,182:0.69:265
chr6	33768726	rs34884883	A	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.585;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr6	33768897	rs2281820	A	G	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-0.685;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:440,123:0.22:563
chr6	34026938	rs2451359	C	T	19326.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr6	34078463	rs744102	G	A	4477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=1165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-0.058;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:855,307:0.26:1162
chr6	34208843	rs73744860	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chr6	34211341	rs35381162	GT	G	7633.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr6	34212743	rs2780219	A	G	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	34213296	rs1150783	T	C	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr6	34214322	rs1150781	C	G	16202.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr6	34214348	rs34410712	C	T	2289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.927;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:407,151:0.27:558
chr6	34214994	rs3997805	G	GTC	3423.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	34263313	.	T	TA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.092;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	34263564	rs41269038	G	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=0.301;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr6	34664207	rs3800456	T	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	34838577	rs3734262	C	T	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:140,57:0.29:197
chr6	34857302	.	G	GGGCGGC	1111.73	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,34:0.31:108
chr6	34949451	rs3817473	C	T	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:94,171:0.65:265
chr6	34949607	rs2293242	C	T	11126.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:262,505:0.66:767
chr6	34962019	rs11755713	G	C	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr6	34977663	rs9380481	C	A	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.90;ReadPosRankSum=0.983;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:7,25:0.78:32
chr6	34977679	.	TAAAAAAA	T	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=44.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=1.506;SOR=2.198;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr6	34977813	rs12661991	A	G	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=2.129;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-1.057;QD=14.32;ReadPosRankSum=-1.977;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:50,134:0.73:184
chr6	35027814	rs820086	G	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr6	35027927	rs820085	T	C	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	35046154	rs820100	T	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	35047579	rs2762338	G	C	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr6	35047732	rs2689094	T	C	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.440;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr6	35050506	rs2177382	G	A	12711.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr6	35053383	rs66645129	CTAGGAAGAG	C	889.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr6	35054672	rs4276486	G	C	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:20,52:0.72:72
chr6	35054983	rs71650764	GGCAGCGTAGACGCT	G	2184.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:131,63:0.32:194
chr6	35056443	rs2005	A	G	14413.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr6	35058117	rs707968	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr6	35088956	rs2494096	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr6	35089811	rs2077750	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,31:0.70:44
chr6	35104018	rs12661389	C	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:141,66:0.32:207
chr6	35107682	rs3777748	T	A	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr6	35109032	rs142118879	CGCGGCCTG	C	1142.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	35203203	rs13214290	T	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	35205541	rs1929849	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	35205881	rs734538	G	A	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	35216296	rs2071920	C	T	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	35258539	rs763157	C	A	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	35259261	rs1894650	C	G	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr6	35259646	rs9366883	G	C	9051.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr6	35260503	rs1557567	C	T	15229.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr6	35260530	rs1557568	C	T	14239.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr6	35285720	rs2395617	A	C	13288.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr6	35378778	rs2016520	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	35391787	rs2076167	C	T	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,240:0.99:242
chr6	35423489	rs7757405	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr6	35423662	rs4713867	A	C	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:146,90:0.38:236
chr6	35424188	rs3800377	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:58,19:0.25:77
chr6	35424268	rs4713868	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr6	35425416	rs13214239	A	G	4047.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:407,232:0.36:639
chr6	35443573	rs2076170	T	G	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr6	35444349	rs34250016	TACA	T	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	35448189	rs760782	T	C	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:295,184:0.38:479
chr6	35454281	rs376486327	G	A	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:367,202:0.36:569
chr6	35473252	rs2395628	C	T	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr6	35474073	rs12215920	C	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:35,49:0.58:84
chr6	35477025	rs2064318	C	G	10254.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.84;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr6	35477025	.	CTTCTTTA	GTTCTTTA,GTTCTTTG	2561	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=4;MMLQ=25;MQ=60.0;NF=163,100;NR=86,50;PP=1215,2561;QD=5.01916149617;SC=TTTGATTGCTCTTCTTTATCA;SbPval=0.53;Source=Platypus;TC=249;TCF=163;TCR=86;TR=249,150;WE=35477040;WS=35477015;set=Platypus	GT:AF:DP	0/1:1.00:249
chr6	35477032	rs2064317	A	G	4086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-2.906;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:102,176:0.63:278
chr6	35477152	rs7752728	C	T	13691.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr6	35477303	rs9296155	T	C	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	35478612	rs2273001	G	A	8884.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr6	35479574	rs7764472	G	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	35479876	rs2273003	C	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	35480262	rs1540910	T	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	35610681	rs2143404	T	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	35705892	rs2817041	T	C	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	35706063	rs56101324	T	TGG,TG	386.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=18;set=Intersection	GT:AF:DP	1/1:0.92:13
chr6	35715303	rs2252881	G	C	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:213,105:0.33:318
chr6	35745655	rs2478467	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	35747108	rs6910332	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr6	35748931	rs34109614	T	C	1365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=-0.852;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:53,68:0.56:121
chr6	35749059	rs2766579	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr6	35755658	rs12211728	A	G	6001.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:190,276:0.59:466
chr6	35761336	rs6457853	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.333;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:232,65:0.22:297
chr6	35763786	rs56279340	C	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-1.740;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:299,63:0.17:362
chr6	35764943	rs3748051	T	C	2277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.771;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.741;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:320,144:0.31:464
chr6	35765068	rs3748050	T	C	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=7.475;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.750;QD=5.97;ReadPosRankSum=0.692;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:105,61:0.37:166
chr6	35765151	rs3748049	T	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr6	35765177	rs3748048	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr6	35803192	rs1049649	C	A	3227.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:206,161:0.44:367
chr6	35803283	rs2859420	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:254,143:0.36:397
chr6	35810503	rs3213580	T	A	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr6	35836705	rs9296168	T	C	1366.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:131,75:0.36:206
chr6	35872860	rs9470167	A	G	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.127;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr6	35888067	rs662713	G	C	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:181,105:0.37:286
chr6	35918965	rs116200048	C	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr6	35923246	rs2295852	T	C	2460.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:82,121:0.60:203
chr6	35943339	.	G	GT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;ClippingRankSum=0.000;DP=272;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.199;QD=0.35;ReadPosRankSum=0.949;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:177,36:0.17:213
chr6	35945219	.	CT	C	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=-0.623;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:75,31:0.29:106
chr6	35950075	rs9470186	G	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:49,81:0.62:130
chr6	36041431	rs851010	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	36064036	rs851007	G	A	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	36075219	rs9470219	A	C	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	36098333	rs12191295	T	C	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr6	36103921	rs2252430	G	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	36181481	rs72320718	G	GA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=1.434;QD=6.84;ReadPosRankSum=-0.828;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr6	36185681	rs12525283	G	C	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	36189887	rs2301422	C	G	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	36190156	rs2157317	C	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	36259369	.	C	G	514	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=10;HapScore=2;MGOF=6;MMLQ=23;MQ=58.38;NF=0;NR=30;PP=514;QD=18.2923737516;SC=ACGGAGGGGGCGGGGGAGGGC;SbPval=1.0;Source=Platypus;TC=72;TCF=31;TCR=41;TR=30;WE=36259377;WS=36259359;set=Platypus	GT:AD:AF:DP	0/1:42,30:0.42:72
chr6	36260914	rs2239796	C	T	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr6	36261885	rs4713949	A	G	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	36262991	rs4713951	C	T	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr6	36269603	rs10947600	G	A	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:76,52:0.41:128
chr6	36269725	rs34598813	A	G	5427.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:123,237:0.66:360
chr6	36270130	rs12199580	C	A	4435.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:506,250:0.33:756
chr6	36274153	rs12197079	C	T	9767.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr6	36275458	rs4713956	T	C	12103.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr6	36287312	rs743852	G	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	36288879	rs112374394	G	GGTCTCAGCT	2108.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	36289145	rs763018	A	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	36290030	rs12190546	C	G	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	36294200	rs763020	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	36294864	rs41270098	A	G	13365.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr6	36294915	rs6923009	T	A	13018.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr6	36296623	rs12192390	G	A	2962.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	36341294	rs3213530	C	T	4049.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.073;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	36353169	rs6901513	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr6	36355372	rs2234071	T	C	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.023;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-1.958;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr6	36359695	rs147244815	TTTA	T	172.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.890;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr6	36359696	rs199820722	TTA	T	129.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.276;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.401;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr6	36368169	rs6917489	G	A	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr6	36393582	.	A	AAT	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.375;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	36452603	rs201092661	TA	T	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.797;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:94,48:0.34:142
chr6	36464468	.	G	C	1615.77	.	AC=1;AF=0.500;AN=2;DP=224;set=Intersection	GT:AD:AF:DP	0/1:133,88:0.40:221
chr6	36465715	rs57611057	CT	C	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.374;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.114;QD=3.04;ReadPosRankSum=0.130;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:53,39:0.42:92
chr6	36483295	.	CCA	C	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-2.518;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	36569717	.	CT	C	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.154;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr6	36652339	rs3176352	C	G	4133.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:88,188:0.68:276
chr6	36686272	rs236487	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	36686407	rs236486	C	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	36689030	rs236478	A	C	10209.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr6	36689630	rs236477	C	T	8407.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr6	36689961	rs183541	A	C	18381.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,694:1.00:694
chr6	36695519	rs236472	T	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	36695661	rs236471	A	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	36696330	rs236470	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.68;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	36698285	rs190201	G	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	36698294	rs236462	G	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.83;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	36698556	rs57522248	AC	A	2478.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:5,62:0.93:67
chr6	36698561	rs13199451	C	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:5,63:0.93:68
chr6	36700202	rs374852059	G	GGGT	757.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=42.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	36711406	rs3213534	G	A	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	36712962	rs743870	C	T	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	36713263	rs763046	A	G	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	36714139	rs3213535	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	36715833	rs1010790	A	T	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	36723884	rs236443	C	G	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:2,14:0.88:16
chr6	36733132	rs763048	G	A	25029.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	1/1:0,951:1.00:951
chr6	36767920	rs11419511	T	TG	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	36853685	rs11461876	G	GC	816.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	36853786	rs11461877	A	AG	3269.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	36853857	rs5875560	T	TCGC	5808.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:4,224:0.98:228
chr6	36922385	rs1405070	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	36922684	rs1405069	A	C	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	36931162	rs2296934	A	G	9579.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:2,328:0.99:330
chr6	36931491	rs34165286	G	A	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:111,67:0.38:178
chr6	36931549	rs4585544	A	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr6	36943284	rs191316094	G	A	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr6	36943522	rs188617109	G	A	9799.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:232,448:0.66:680
chr6	36944495	rs708007	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	36949527	rs2293390	C	T	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:61,29:0.32:90
chr6	36976637	rs831510	G	C	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.541;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:258,102:0.28:360
chr6	36976946	rs4714032	G	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr6	36978745	rs1724088	G	A	4792.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	0/1:466,267:0.36:733
chr6	36978834	rs1753288	A	G	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:178,145:0.45:323
chr6	36978879	rs1724087	T	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr6	36982309	rs75479065	C	CT	1377.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:94,51:0.35:145
chr6	36982947	rs831494	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr6	36989391	rs831502	G	C	1270.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:209,82:0.28:291
chr6	36990736	rs831499	T	C	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:259,146:0.36:405
chr6	36995222	rs2274587	G	A	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:214,94:0.31:308
chr6	37138023	.	GGCAGCA	G,GGCA	6347.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=191;set=Intersection	GT:AF:DP	1/2:0.10,0.90:159
chr6	37140670	rs71773641	AT	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-4.278;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr6	37180237	rs1224329	G	A	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr6	37180355	rs1150789	G	A	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:77,129:0.63:206
chr6	37180523	rs1150790	A	G	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:87,162:0.65:249
chr6	37249913	rs41272216	C	A	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:141,90:0.39:231
chr6	37250112	rs195753	A	G	6694.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:162,300:0.65:462
chr6	37252210	rs3818136	C	T	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:104,141:0.58:245
chr6	37280844	rs149708	A	G	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr6	37348920	rs2284923	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:119,58:0.33:177
chr6	37349033	rs2284922	G	A	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:204,110:0.35:314
chr6	37418263	rs2270687	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	37446061	rs3830396	TCA	T	5731.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	37447075	rs2797790	G	A	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	37447994	rs1874736	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	37450914	rs10692	T	C	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	37475515	.	T	TGG	2971	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=4;HapScore=1;MGOF=132;MMLQ=28;MQ=49.77;NF=2;NR=0;PP=2971;QD=20;SC=TAGATGGTGATGGGGATGGGG;SbPval=0.23;Source=Platypus;TC=15;TCF=7;TCR=8;TR=2;WE=37475523;WS=37475505;set=Platypus	GT:AD:AF:DP	0/1:13,2:0.13:15
chr6	37501967	rs2797786	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,35:0.29:121
chr6	37522966	rs6942122	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	37611796	rs45511994	G	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	37612244	.	C	T	442.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr6	37615258	.	A	G	299	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=4;HapScore=2;MGOF=20;MMLQ=16;MQ=60.0;NF=1;NR=12;PP=299;QD=25.6747086575;SC=GAACGTTGGGAGAAGAGGGGA;SbPval=0.64;Source=Platypus;TC=13;TCF=1;TCR=12;TR=13;WE=37615266;WS=37615248;set=Platypus	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	37620129	rs2273109	G	A	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	37623566	rs3846874	C	T	8619.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr6	37631768	rs10947690	A	G	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:62,141:0.69:203
chr6	37664482	rs45627433	CG	GC	4614.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;JOINED;set=Intersection	GT:AD:AF:DP	0/1:194,126:0.39:320
chr6	37971449	rs146304338	G	GT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.589;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=13.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.743;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	38084569	rs2295791	C	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	38147355	rs6458044	A	G	12001.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr6	38312936	rs28360643	A	G	3512.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:101,170:0.63:271
chr6	38455368	rs10559751	CGAGA	C,CGA	607.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.013;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=8.741;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=2.584;SOR=0.050;set=HC	GT:AD:AF:DP	1/2:5,10,14:0.34,0.48:29
chr6	38472125	rs9380754	GG	CT	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr6	38560215	rs2180106	T	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr6	38560242	rs73733941	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr6	38650628	rs4746	T	G	6899.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:198,332:0.63:530
chr6	38697839	rs56284095	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr6	38702111	rs70981586	C	CCA	194.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=21.56;ReadPosRankSum=-0.967;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr6	38702169	rs74904743	C	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.47;ReadPosRankSum=1.557;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr6	38704943	rs6935293	A	G	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:114,110:0.49:224
chr6	38723670	rs7773138	A	G	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	38729458	rs2448401	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr6	38729511	rs61748600	T	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.332;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:80,35:0.30:115
chr6	38746090	rs1033526	A	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.86;ReadPosRankSum=0.282;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,2:0.22:9
chr6	38746176	rs61748601	G	A	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=-0.372;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chr6	38746263	rs1738260	A	T	496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.524;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:82,34:0.29:116
chr6	38746294	rs1738259	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=1.421;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:76,31:0.29:107
chr6	38749200	rs138749107	ACAAATATATCATAT	A	1075.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=6.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=0.481;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:77,32:0.29:109
chr6	38750705	rs3800357	A	G	47.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:17,4:0.19:21
chr6	38757511	rs12528676	A	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr6	38770972	.	G	A	500.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	38771106	rs56247993	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr6	38771168	rs55939633	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr6	38771271	rs55918123	G	A	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr6	38773172	rs1678682	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr6	38773293	rs874808	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr6	38775336	rs1738229	T	G	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.384;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:89,45:0.34:134
chr6	38781683	rs12526772	T	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr6	38781749	rs12524938	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=1.402;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr6	38781866	rs1678690	C	G	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=1.038;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:65,27:0.29:92
chr6	38781931	rs1738221	A	T	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr6	38820451	rs9369085	G	A	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.539;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:136,85:0.38:221
chr6	38820599	rs9380787	T	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=-0.512;SOR=1.495;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr6	38825329	rs2061907	C	T	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:214,118:0.36:332
chr6	38828424	rs34840510	G	GT	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr6	38828453	rs6458073	A	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr6	38841101	rs9380795	G	A	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:163,74:0.31:237
chr6	38843279	rs77031115	CC	TT	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.70;ReadPosRankSum=-1.426;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr6	38843283	rs35696175	C	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.74;ReadPosRankSum=-0.045;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	38843426	rs6458080	C	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:133,74:0.36:207
chr6	38897453	.	T	TA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=1.958;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:75,21:0.22:96
chr6	38899485	rs9296268	G	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	38905667	rs199520405	G	GT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.383;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr6	38913177	rs522327	A	G	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	38951998	rs1537232	C	T	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-1.517;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:101,41:0.29:142
chr6	38952246	rs34819199	GCACA	G	1235.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,33:0.79:42
chr6	38952287	rs35676616	G	T	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.537;QD=16.61;ReadPosRankSum=0.089;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr6	38957771	rs3737095	T	C	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr6	38957853	rs3737094	A	G	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:148,237:0.62:385
chr6	38979946	rs9296273	T	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	38994185	rs2273094	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:61,34:0.36:95
chr6	39033420	rs910163	A	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.807;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.789;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:49,21:0.30:70
chr6	39033427	rs910162	A	T	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.096;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=1.749;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:56,22:0.28:78
chr6	39033602	rs6918287	A	G	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	39033778	rs3765466	T	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr6	39034095	rs10305457	C	T	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:191,103:0.35:294
chr6	39034195	rs4711571	A	C	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr6	39034210	rs4711572	A	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr6	39034248	rs9296277	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr6	39040654	rs2235868	A	C	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:348,169:0.33:517
chr6	39041502	rs1042044	A	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:163,103:0.39:266
chr6	39048491	rs1126476	A	C	853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=0.164;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:45,44:0.49:89
chr6	39159574	.	G	A	413.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr6	39162206	rs2815098	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	39162227	rs1541816	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:73,45:0.38:118
chr6	39271656	rs7451024	G	A	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:46,78:0.63:124
chr6	39278848	rs200555541	GCACACA	G	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=22.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.12;ReadPosRankSum=0.462;SOR=3.483;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr6	39282036	rs10947804	T	C	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=4.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=2.025;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:141,56:0.28:197
chr6	39282748	rs11756070	G	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:86,47:0.35:133
chr6	39282806	rs11756091	G	T	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:99,58:0.37:157
chr6	39283083	rs11753141	G	A	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:363,198:0.35:561
chr6	39284050	rs1535500	G	T	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.635;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:85,51:0.38:136
chr6	39284184	rs3734618	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=2.914;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:106,40:0.27:146
chr6	39290200	rs3734619	C	T	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:243,125:0.34:368
chr6	39311052	rs116150706	C	T	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=2.307;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:54,44:0.45:98
chr6	39313618	rs34799567	G	GA	8823.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	39325078	rs20455	A	G	5709.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr6	39325224	rs66640474	CT	C	222.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=1.048;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr6	39328450	rs56731267	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr6	39330135	rs56003110	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	39330180	rs45460596	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:45,16:0.26:61
chr6	39353532	.	GA	G	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=7.096;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=2.010;QD=6.09;ReadPosRankSum=0.999;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:26,35:0.57:61
chr6	39682367	rs303701	G	A	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	39688367	rs10947834	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	39693271	rs10947835	C	G	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-1.234;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:17,25:0.60:42
chr6	39828593	rs2504099	A	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr6	39828862	rs2504098	A	C	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:71,137:0.66:208
chr6	39832111	rs2504787	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr6	39832363	rs2504094	C	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.165;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr6	39832964	rs2504093	T	C	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:51,89:0.64:140
chr6	39839164	rs2504088	T	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-0.202;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:18,32:0.64:50
chr6	39846137	rs2504086	A	G	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:46,80:0.63:126
chr6	39851679	rs2504082	A	G	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr6	39851818	rs3003929	G	A	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=0.652;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:55,76:0.58:131
chr6	39855112	rs3003945	T	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr6	39855427	rs3008810	C	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:16,35:0.69:51
chr6	39855490	rs5875688	C	CTGGA	445.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	39864730	rs3008815	C	T	5223.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:121,231:0.66:352
chr6	39865047	rs3004067	T	C	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:70,160:0.70:230
chr6	39866805	rs3830992	A	AACAATGGGC	4066.73	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:91,108:0.54:199
chr6	39869066	rs882559	G	C	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:80,127:0.61:207
chr6	39874329	rs41273140	C	T	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,61:0.57:107
chr6	39895410	rs3008822	T	C	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:34,57:0.63:91
chr6	40360465	rs3734557	A	G	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:247,141:0.36:388
chr6	40399446	rs7775772	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	41020205	rs6939989	A	G	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr6	41036770	rs2294695	A	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr6	41037778	rs2272986	C	T	2385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=-0.093;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:38,109:0.74:147
chr6	41047022	rs6921430	G	A	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	41052002	rs6908595	A	G	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	41057862	rs202114917	A	AT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.955;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:67,21:0.24:88
chr6	41059169	rs10080924	G	A	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	41059458	rs12189627	T	G	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,82:0.61:135
chr6	41100861	rs6911977	C	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr6	41117824	rs45537633	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,39:0.80:49
chr6	41162060	rs13216201	G	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr6	41162518	rs3747742	T	C	4209.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:112,189:0.63:301
chr6	41162715	rs4711657	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr6	41169021	rs5875743	C	CA	1907.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	41196034	rs6458202	T	C	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	41196040	rs6458203	T	C	2615.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	41196041	rs6458204	C	T	2615.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=1.773;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	41196095	rs6458205	C	T	5060.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	41196104	rs10700462	C	CCTT	5539.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	41196156	rs2803496	C	T	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	41196605	rs9369265	T	C	6416.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr6	41196727	rs2101269	C	T	7796.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr6	41197785	rs9296357	T	C	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	41197857	rs7769759	C	T	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	41198909	rs4337930	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	41200293	rs12526284	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	41244020	rs2234242	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:27,38:0.58:65
chr6	41250466	rs2234237	T	A	2712.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:90,127:0.59:217
chr6	41250594	rs2234236	T	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr6	41250609	rs12524876	T	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr6	41303592	rs9394782	T	C	11386.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:292,537:0.65:829
chr6	41303784	rs9471575	G	A	5912.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:64,150:0.70:214
chr6	41303805	rs9471576	G	A	6181.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:78,173:0.69:251
chr6	41303995	rs9471577	A	G	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:55,129:0.70:184
chr6	41304241	rs9471578	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr6	41309698	rs2236370	G	C	5644.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:104,255:0.71:359
chr6	41318438	rs2273962	A	G	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:56,83:0.60:139
chr6	41470081	rs13208274	T	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	41486990	rs2496647	G	A	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr6	41537817	.	GAC	G	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=1.070;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	41554993	rs11758591	G	C	17023.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr6	41556216	rs55977799	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr6	41617626	rs2073159	G	C	3723.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:93,178:0.66:271
chr6	41617658	rs2281326	G	A	2386.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr6	41620975	rs2842657	A	G	7320.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:164,345:0.68:509
chr6	41652604	rs1062966	T	C	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=1.443;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:95,61:0.39:156
chr6	41654110	rs1076727	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:52,25:0.32:77
chr6	41655005	rs2073157	G	A	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr6	41655340	rs9462736	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr6	41658566	rs2273068	C	T	1290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=1.189;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:206,82:0.28:288
chr6	41658889	rs1015149	C	T	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:136,69:0.34:205
chr6	41659304	rs1015150	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr6	41659327	rs59689567	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr6	41739173	rs35310379	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,78:0.56:139
chr6	41740483	rs140148336	CGT	C,CGTGT	567.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=36;set=Intersection	GT:AF:DP	0/1:0.75:28
chr6	41748263	rs28360509	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr6	41748279	rs10947986	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	41753084	rs9394831	C	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:92,45:0.33:137
chr6	41754576	rs9381093	C	T	3304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=683;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.264;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:480,202:0.30:682
chr6	41755410	rs9471653	C	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:167,63:0.27:230
chr6	41773735	rs6926173	G	A	6486.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:191,294:0.61:485
chr6	41888827	rs2274578	C	G	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr6	41898096	rs2479726	A	G	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	41898564	rs12661819	C	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr6	41903782	rs1051130	A	C	5032.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr6	41905174	rs2479717	T	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	42025058	rs6917299	G	A	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	42025402	rs1134218	A	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	42036395	rs2492926	A	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	42044945	rs3800286	G	A	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:103,131:0.56:234
chr6	42072709	rs150599390	ACTCCTC	A	2438.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:47,63:0.57:110
chr6	42073241	rs28666916	C	T	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:43,101:0.70:144
chr6	42074106	rs9394866	A	G	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:62,126:0.67:188
chr6	42074288	rs9471762	C	G	1613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.214;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=-0.539;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:31,71:0.70:102
chr6	42075104	.	GGGTGGGGGTTCCAGCAGCAGGGGAGGT	G	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.276;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.326;QD=19.80;ReadPosRankSum=-1.121;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	42075377	rs9394868	A	C	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr6	42075461	rs9381137	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr6	42077870	rs9471765	A	G	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	42094614	rs9471776	A	G	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-0.583;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr6	42094699	rs6940849	G	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	42110228	rs3749918	C	A	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.065;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:29,24:0.45:53
chr6	42110263	rs6911399	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	42123317	rs1132156	A	C	4102.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:126,186:0.60:312
chr6	42141269	rs9471793	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	42153609	rs9471799	C	T	9494.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr6	42154104	rs6909313	G	A	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr6	42155611	rs9462780	T	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr6	42155666	rs9462781	C	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=2.496;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr6	42155930	rs9462782	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr6	42156031	rs151241798	CGTGTGTGTGTGTGTGT	C	411.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.19;ReadPosRankSum=0.711;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr6	42156239	rs73434275	G	A	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr6	42162388	rs3749921	A	G	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:163,101:0.38:264
chr6	42162575	rs1474867	A	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	42176120	rs2295278	G	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.072;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.559;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:66,15:0.19:81
chr6	42176451	rs6936290	G	A	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	42176743	rs57369579	TG	T	784.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.39;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	42176749	rs55788550	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=0.155;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr6	42181960	rs1884318	A	C	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=1.381;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:70,44:0.39:114
chr6	42182183	rs1884317	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	42185564	rs9471809	A	C	6720.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:190,310:0.62:500
chr6	42185712	rs9471810	A	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,76:0.64:119
chr6	42210936	rs3830886	T	TG	2842.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:27,99:0.79:126
chr6	42210951	rs2295276	C	G	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;MQ=60.13;set=Intersection	GT:AD:AF:DP	0/1:46,116:0.72:162
chr6	42236214	rs138286986	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.923;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:146,43:0.23:189
chr6	42532102	rs3749897	C	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	42600319	rs5014584	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	42600696	rs56178453	CT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.07;ReadPosRankSum=0.660;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	42608121	.	GGTGTGTGTGTGTGTGT	G	1415	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5064;HP=2;HapScore=2;MGOF=3;MMLQ=17;MQ=59.53;NF=0;NR=3;PP=1415;QD=472.666666667;SC=GAACCAGTAAGGTGTGTGTGT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=3;WE=42608147;WS=42608111;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr6	42608122	rs373742087	GT	G	939.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.86;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	42608124	.	GTGTGTGTGTGTGTGT	G	826.73	.	AC=2;AF=1.00;ALERT;AN=2;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.07;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr6	42609352	rs148521882	C	A	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:307,130:0.30:437
chr6	42611936	rs11378753	T	TA	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.674;QD=2.26;ReadPosRankSum=-0.874;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:78,29:0.27:107
chr6	42612312	rs7767888	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	42615950	rs2273176	C	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	42626341	rs7748447	G	A	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	42626564	.	TAA	T,TA	1218.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.338;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.34;MQRankSum=1.065;QD=10.79;ReadPosRankSum=0.460;SOR=0.385;set=HC	GT:AD:AF:DP	1/2:17,46,50:0.41,0.44:113
chr6	42627258	rs60472118	TACAC	T	501.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.845;QD=21.81;ReadPosRankSum=-0.659;SOR=0.191;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr6	42627264	rs201025004	C	T	264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=1.230;QD=12.03;ReadPosRankSum=0.412;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr6	42627430	rs6916713	C	T	4749.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-0.682;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:2,183:0.99:185
chr6	42627434	rs6917033	G	A	4823.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.66;ReadPosRankSum=-0.766;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,186:0.99:188
chr6	42638564	rs4460209	T	C	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	42641704	rs761537	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	42644623	rs2038261	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	42650766	rs34240626	G	GT	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	42652667	rs434505	G	A	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr6	42658752	rs373341	T	C	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	42666020	rs361524	G	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	42666061	rs434102	T	C	5394.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	42666145	rs425876	C	T	14584.77	.	AC=2;AF=1.00;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr6	42666164	rs390659	G	C	15746.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr6	42666365	rs389999	G	C	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	42713618	rs2234026	A	G	14372.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr6	42853842	rs2179719	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	42905788	rs62416354	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr6	42978154	rs190104780	C	T	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:166,86:0.34:252
chr6	42989057	rs9296409	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	43006739	rs144154816	G	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:114,74:0.39:188
chr6	43014298	rs9394939	TT	CC	12381.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	43038938	.	TA	T	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.286;QD=2.96;ReadPosRankSum=0.327;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr6	43106824	rs45484692	G	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:156,76:0.33:232
chr6	43109751	rs6905948	G	A	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:281,131:0.32:412
chr6	43112382	rs7759437	C	T	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:320,186:0.37:506
chr6	43114211	rs60930750	C	CT	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	43154091	rs941849	C	G	11121.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr6	43156160	rs10498754	T	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-1.243;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:52,25:0.32:77
chr6	43166478	.	G	A	871.77	.	AC=1;AF=0.500;AN=2;DP=170;set=Intersection	GT:AD:AF:DP	0/1:116,54:0.32:170
chr6	43182657	rs1214714	G	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	43188716	rs2756178	A	T	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:66,146:0.69:212
chr6	43190135	rs62417521	C	T	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:59,130:0.69:189
chr6	43220359	rs35235406	C	CA	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.305;QD=6.83;ReadPosRankSum=-0.833;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:41,43:0.51:84
chr6	43221264	rs12664472	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr6	43222526	rs11318521	GT	G	3138.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr6	43225408	rs7769668	G	A	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr6	43230970	rs3800294	G	C	7269.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:145,325:0.69:470
chr6	43231163	rs10948069	T	C	2281.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:58,107:0.65:165
chr6	43250387	rs6936397	G	C	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:79,104:0.57:183
chr6	43251912	rs3800297	A	G	1966.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:34,88:0.72:122
chr6	43252029	rs3800298	T	C	3557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.20;MQRankSum=3.665;QD=14.76;ReadPosRankSum=0.932;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:74,167:0.69:241
chr6	43252107	rs11269387	G	GGAGGGGCTTCTCCAGAACCAAGGT	1346.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr6	43252141	rs7763131	T	C	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr6	43269029	rs1574430	A	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:109,57:0.34:166
chr6	43269179	rs2841648	CC	AA	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,29:0.40:73
chr6	43270097	rs2651184	T	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	43270151	rs2270860	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr6	43270326	rs2841646	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	43273604	rs2242416	A	G	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:112,63:0.36:175
chr6	43276388	rs12193537	G	C	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:118,207:0.64:325
chr6	43276390	rs2254303	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:211,116:0.35:327
chr6	43304798	rs74725336	T	C	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr6	43306346	rs1459675	A	G	17710.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr6	43323917	rs41281796	G	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr6	43336771	rs9381238	C	T	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	43399837	rs700008	A	G	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr6	43400342	rs45535935	T	G	8747.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:216,384:0.64:600
chr6	43412865	rs2125739	T	C	15283.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr6	43413081	rs9381242	G	T	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:71,43:0.38:114
chr6	43414216	rs1214746	T	C	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	43414234	rs1214747	G	C	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	43418691	rs1214748	G	A	10737.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr6	43418733	rs1214749	G	A	10676.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr6	43421990	rs200997419	AAG	A	1667.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr6	43422698	rs72857275	C	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.271;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	43469445	.	GACACACACAC	G,GACACAC	1033.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=35.65;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:0,17,12:0.59,0.41:29
chr6	43469505	.	GTC	G	335	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=3;MGOF=82;MMLQ=26;MQ=58.68;NF=3;NR=21;PP=335;QD=14.375;SC=CACTCTCTCTGTCTCTCTCTC;SbPval=0.38;Source=Platypus;TC=33;TCF=3;TCR=30;TR=24;WE=43469527;WS=43469495;set=Platypus	GT:AD:AF:DP	0/1:9,24:0.73:33
chr6	43469519	rs111549887	C	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.428;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr6	43494319	rs1150800	A	G	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr6	43496662	rs1106841	A	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr6	43501580	rs11404474	C	CA	846.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	43533305	rs11362688	TA	T	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=0.112;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,32:0.48:66
chr6	43546261	.	C	CA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=4.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.488;SOR=0.208;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr6	43596475	rs45628139	T	C	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:50,62:0.55:112
chr6	43596814	rs112851070	C	G	3059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=3.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=1.265;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:83,150:0.64:233
chr6	43608386	rs7106	C	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.264;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr6	43738350	rs2010963	C	G	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	43745095	rs2146323	C	A	97.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	43747371	rs3025007	C	T	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	43747450	rs3025009	G	A	14193.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr6	43747577	rs3025010	T	C	3570.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:303,189:0.38:492
chr6	43748643	rs3025052	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	43752536	rs3025039	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.808;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr6	44081718	rs6883	G	A	2373.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:197,124:0.39:321
chr6	44081987	rs4711767	T	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr6	44102572	rs3841315	C	CT	6045.73	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:333,194:0.37:527
chr6	44108937	rs4628095	G	A	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chr6	44115169	rs4714759	G	A	3886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-0.304;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:329,220:0.40:549
chr6	44117607	rs4714761	C	T	2057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.998;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:340,135:0.28:475
chr6	44117664	rs4714762	C	T	3162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=1.527;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:488,201:0.29:689
chr6	44117727	rs4711768	A	G	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:392,180:0.31:572
chr6	44119532	rs3734696	G	A	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:230,127:0.36:357
chr6	44119676	rs3734697	A	G	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:305,181:0.37:486
chr6	44121270	rs1041523	C	T	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr6	44122416	rs10537719	TCTC	T	1054.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.332;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.400;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.160;QD=15.98;ReadPosRankSum=0.172;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr6	44134581	rs914503	C	T	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	44134610	rs34901210	TTCC	T	1245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.891;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.500;QD=11.12;ReadPosRankSum=0.675;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr6	44136667	rs35889800	A	AT	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.239;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.450;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr6	44136899	rs4711770	A	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	44136911	rs112447145	T	C	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	44140174	rs74993668	G	C	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:58,108:0.65:166
chr6	44140275	rs1418487	A	G	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	44140320	rs1418488	C	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr6	44140818	rs3813500	C	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:79,65:0.45:144
chr6	44143906	rs79080242	C	T	10715.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:260,493:0.65:753
chr6	44145181	rs4711775	C	T	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr6	44147821	rs34710081	A	G	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-1.182;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:110,58:0.35:168
chr6	44149153	.	CCA	C	406	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=3;MGOF=41;MMLQ=26;MQ=59.35;NF=0;NR=11;PP=406;QD=37.7272727273;SC=CAAGCCCTAACCACACACACA;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=11;WE=44149164;WS=44149143;set=Platypus	GT:AD:AF:DP	0/1:3,11:0.79:14
chr6	44185254	rs3734701	T	C	10565.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.84;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	44185254	.	TGCCTGCTGCT	CGCCTGCTGCA,CGCCTGCTGCT	2610	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=93,149;NR=71,103;PP=2610,1114;QD=20;SC=GCTGCTGTCCTGCCTGCTGCT;SbPval=0.43;Source=Platypus;TC=252;TCF=149;TCR=103;TR=164,252;WE=44185272;WS=44185244;set=Platypus	GT:AF:DP	0/1:0.65:252
chr6	44185264	rs79241016	T	A	4415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.786;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=2.687;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:102,195:0.66:297
chr6	44191254	rs11752118	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.945;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.910;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr6	44216544	rs112518852	GT	G	7727.73	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:17,402:0.96:419
chr6	44218120	rs13296	A	G	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	44220076	rs504697	T	C	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	44222161	rs35131506	C	CTG	1594.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	44223010	rs1875324	G	T	14707.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr6	44224924	rs575034	C	A	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	44227751	rs12211448	C	A	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:89,165:0.65:254
chr6	44228162	rs2233437	G	A	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	44240193	rs571770	C	G	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr6	44240559	rs524533	C	T	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:329,165:0.33:494
chr6	44241325	rs78255700	G	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr6	44243154	rs12194552	C	T	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:50,81:0.62:131
chr6	44243559	rs3734710	A	G	2292.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:207,117:0.36:324
chr6	44245930	rs325018	C	T	1448.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:127,83:0.40:210
chr6	44246049	rs325017	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr6	44247951	rs484757	T	G	12708.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr6	44250165	rs516582	A	G	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:225,117:0.34:342
chr6	44253617	rs324142	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.251;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr6	44253650	rs2297335	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr6	44253749	rs324143	A	G	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	44253765	rs2297336	A	G	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:70,105:0.60:175
chr6	44255459	rs324146	G	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:192,106:0.36:298
chr6	44268135	rs325009	C	T	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	44268371	rs325008	T	C	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	44269023	rs325007	T	C	22444.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:0,862:1.00:862
chr6	44269193	rs498512	C	T	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:186,91:0.33:277
chr6	44269640	rs325006	G	A	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	44269664	rs10578812	CAGG	C	2375.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,63:0.66:95
chr6	44269680	rs325005	C	G	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	44270365	rs325004	C	G	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr6	44270768	rs325002	G	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:75,57:0.43:132
chr6	44270936	rs325001	C	T	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=2.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-0.427;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:241,146:0.38:387
chr6	44273546	rs324137	A	C	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.219;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:160,94:0.37:254
chr6	44274797	rs7740535	T	C	11278.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr6	44275011	rs324136	T	C	17599.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr6	44278592	rs10807297	A	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr6	44280812	rs167772	C	T	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:227,144:0.39:371
chr6	44320548	rs4714783	T	A	7828.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	44355423	rs2297333	C	T	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	44355682	rs34753552	G	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	44355699	rs2297331	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	44357884	rs6908640	T	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	44360680	rs6942323	A	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	44899371	.	CAA	C	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-0.547;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr6	44982593	rs12528232	G	A	1165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-0.309;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:28,55:0.66:83
chr6	44988149	rs1475534	C	T	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	45296618	rs12205523	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr6	45333184	rs2295296	C	T	153.94	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	45922849	rs3734206	C	T	5122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.110;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:177,245:0.58:422
chr6	46047458	rs3734207	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:47,69:0.59:116
chr6	46048000	rs1416165	T	C	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:78,160:0.67:238
chr6	46107312	rs11752816	G	A	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr6	46107752	rs7451713	C	G	11926.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr6	46129345	rs2235881	G	A	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	46135489	rs6926570	T	C	8292.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	46135984	rs3806995	G	T	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	46293328	rs2277121	G	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	46521602	rs699939	C	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	46621097	rs8427	T	A	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr6	46623698	rs3757241	T	C	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	46630068	rs9381469	G	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	46636556	.	GT	G	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.361;QD=2.86;ReadPosRankSum=0.033;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:64,30:0.32:94
chr6	46649231	rs7740677	C	T	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr6	46657057	rs3799277	A	G	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	46665626	.	AAAT	A	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.056;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr6	46672215	rs35205205	TCACACACACA	TCA,T	194.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	0/1:0.67:9
chr6	46672452	rs148052037	TAATC	T	831.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr6	46672943	rs1051931	A	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	46675819	.	T	TA	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=1.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.249;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:110,25:0.19:135
chr6	46682079	rs1362931	A	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	46683978	rs41361844	T	TA	292.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	46717454	rs7766818	A	C	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr6	46719576	rs6901073	C	T	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,65:0.68:96
chr6	46726441	rs9395212	G	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	46726500	rs9472839	C	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr6	46766467	rs872018	GG	CC	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr6	46803018	rs2297020	A	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-1.122;SOR=1.776;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr6	46803102	rs2297019	A	G	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.04;ReadPosRankSum=1.503;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:50,55:0.52:105
chr6	46826508	rs613870	G	A	13390.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr6	46826715	rs572248	T	A	23023.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,867:1.00:867
chr6	46826844	rs571247	T	C	13373.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr6	46826910	rs611779	G	A	10450.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr6	46826979	rs9381487	A	G	4938.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:127,221:0.64:348
chr6	46827073	rs547499	A	G	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:212,94:0.31:306
chr6	46827126	rs610856	C	T	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr6	46827239	rs9395218	C	T	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr6	46828670	rs540727	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	46831060	rs476374	C	T	12982.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr6	46832741	rs529201	T	C	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	46832813	rs614826	G	A	3441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=1.331;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:344,194:0.36:538
chr6	46832968	rs1234128	A	G	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr6	46834685	rs586024	G	A	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr6	46834906	rs5875987	TG	T	2539.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	46836995	rs515866	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	46838659	rs10668775	T	TTG	728.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	46847501	rs2273265	T	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr6	46856100	rs678312	G	A	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	46856263	rs677439	G	A	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:114,46:0.29:160
chr6	46867717	rs220702	C	T	3593.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	46867898	rs3215601	TA	T	1919.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chr6	46995508	rs3842121	G	GA	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.072;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:78,32:0.29:110
chr6	46996218	rs1226485	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.358;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:91,23:0.20:114
chr6	47202666	rs199973375	A	AT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.976;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr6	47220867	rs145308313	C	CGT	473.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr6	47253631	rs11758366	A	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr6	47445927	rs9349406	T	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:5,136:0.96:141
chr6	47512590	rs6916578	C	T	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	47522357	rs9473132	G	A	4751.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr6	47547070	rs34735056	T	TAAA	1437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=0.344;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:15,45:0.75:60
chr6	47548672	rs1014001	C	A	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	47549629	rs3818866	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.99;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	47549883	rs2275446	T	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	47563692	rs2039503	C	T	14879.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr6	47577064	rs9395287	G	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	47591856	rs10948368	T	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	47624239	rs1485784	A	G	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	47624299	rs9369730	A	G	8402.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr6	47626685	rs6935668	C	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	47626833	rs12201065	C	A	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	47641307	rs1411049	G	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	47645772	rs9369734	G	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	47646842	rs6907125	A	G	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr6	47649222	rs8180544	T	G	6474.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr6	47649573	rs10807371	CA	TG	9584.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr6	47649694	rs9381594	A	G	6671.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	47653536	rs9381596	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	47653812	rs60074575	TA	T	1459.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	47653851	rs9296570	T	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	47654591	rs10948376	G	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	47654662	rs10485315	A	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	47654742	rs9296573	A	T	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr6	47654817	rs1556133	C	A	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	47654831	rs1556132	A	G	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	47654864	rs1556131	T	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	47661387	rs9395311	A	G	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr6	47676150	rs9369737	C	T	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	47678455	rs11356177	CT	C	8181.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.120;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.201;QD=23.11;ReadPosRankSum=1.774;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:2,352:0.99:354
chr6	47678678	rs944056	C	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	47681494	rs6916562	T	C	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	47682604	rs9369738	A	C	6838.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr6	47684591	rs1360157	G	A	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	47686101	rs6914013	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	47749728	rs7741473	T	G	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	47754498	rs1329543	A	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr6	47754538	rs6900985	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr6	47847179	rs3799276	A	G	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:276,140:0.34:416
chr6	47847401	rs2068006	A	G	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:201,106:0.35:307
chr6	47847683	.	A	T	65	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=6;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=1;NR=6;PP=65;QD=14.2530303639;SC=CTAATGTTTTAAAAAAAGAAA;SbPval=0.94;Source=Platypus;TC=32;TCF=11;TCR=21;TR=7;WE=47847691;WS=47847673;set=Platypus	GT:AD:AF:DP	0/1:25,7:0.22:32
chr6	49403282	rs8589	T	C	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr6	49409487	rs9473555	G	C	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr6	49409737	rs9473557	T	C	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:75,101:0.57:176
chr6	49411477	rs7744595	G	C	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=1.918;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:21,42:0.67:63
chr6	49411619	rs6458690	A	G	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:43,73:0.63:116
chr6	49412433	rs1141321	C	T	2359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-0.106;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:82,112:0.58:194
chr6	49415351	rs56408395	T	TA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.126;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr6	49421241	rs7769646	G	A	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr6	49425446	rs138085432	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr6	49425521	rs2229384	C	T	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:57,72:0.56:129
chr6	49437853	rs11333073	AT	A	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.912;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr6	49439805	rs4267943	G	A	7449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.535;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:179,351:0.66:530
chr6	49440363	rs4348317	C	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.67;ReadPosRankSum=-0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr6	49440614	rs4469291	A	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	49456523	rs189354845	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr6	49456545	rs2501965	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:44,20:0.31:64
chr6	49459978	rs2501968	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr6	49479775	rs1480615	A	T	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=0.990;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr6	49483578	rs113145900	A	ACTAT	588.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,17:0.40:42
chr6	49485384	rs2501969	C	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr6	49494241	rs9367359	A	G	13788.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr6	49518914	rs6919674	C	G	9236.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr6	49573302	rs1058066	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr6	49574531	rs9473621	C	T	2728.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:49,117:0.70:166
chr6	49574994	rs9473622	A	G	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=-0.825;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:56,86:0.61:142
chr6	49660418	rs12624	A	C	2917.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	49663519	rs76570254	A	C	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:47,97:0.67:144
chr6	49665730	rs41273696	A	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr6	49698750	rs139721085	CT	C	396.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr6	49701439	rs1864312	C	A	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:192,116:0.38:308
chr6	49701523	rs495335	A	G	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:305,163:0.35:468
chr6	49755030	rs28372930	G	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr6	49803199	rs12200814	A	C	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr6	49815873	rs373553362	AT	A	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.407;QD=3.09;ReadPosRankSum=0.376;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:102,56:0.35:158
chr6	49913981	rs7760672	C	T	3453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.691;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:88,162:0.65:250
chr6	49917264	rs9369926	A	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr6	49989657	rs10948540	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-2.701;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr6	50681660	rs35537220	AT	A	1103.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr6	50681817	rs35125047	CT	C,CTT	944.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.483;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.96;MQRankSum=0.000;QD=5.46;ReadPosRankSum=0.396;SOR=0.929;set=HC	GT:AD:AF:DP	1/2:40,60,73:0.35,0.42:173
chr6	50683460	rs112315373	T	A	47.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;QD=5.30;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	50683460	.	TCT	ACA	391	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5270;HP=2;HapScore=2;MGOF=30;MMLQ=28;MQ=59.75;NF=1;NR=5;PP=391;QD=74.0779791437;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.45;Source=Platypus;TC=21;TCF=2;TCR=19;TR=6;WE=50683470;WS=50683450;set=Platypus	GT:AD:AF:DP	1/0:15,6:0.29:21
chr6	50712784	rs3765306	A	G	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,61:0.66:92
chr6	50791640	rs2076308	G	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.347;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:110,49:0.31:159
chr6	50805942	rs2817404	T	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	51274751	.	CTTTTTT	C	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.859;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr6	51483961	rs9381994	T	C	3337.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:89,144:0.62:233
chr6	51491884	rs4715227	T	C	3034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=0.374;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:99,150:0.60:249
chr6	51497344	.	T	TA	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.919;QD=1.41;ReadPosRankSum=0.008;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:81,22:0.21:103
chr6	51586771	rs9349593	G	A	7030.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:173,326:0.65:499
chr6	51605784	rs78229456	C	T	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr6	51611470	rs2397060	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr6	51618170	rs1326605	T	G	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:3,174:0.98:177
chr6	51619444	rs12661470	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr6	51619808	rs9370049	G	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr6	51637711	rs6922497	C	T	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr6	51640751	rs3920621	C	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr6	51640787	rs7775050	A	G	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr6	51656236	rs7765455	G	T	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr6	51701101	rs55777546	T	A	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:135,64:0.32:199
chr6	51732807	rs12210295	C	T	12295.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr6	51776535	rs12196767	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:105,38:0.27:143
chr6	51875250	rs2435322	A	C	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	51890823	rs9296669	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:192,107:0.36:299
chr6	51891011	rs2499480	T	C	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,51:0.38:135
chr6	51908295	.	C	T	321.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr6	51910735	rs58370838	A	AT	340.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr6	51913240	rs10948667	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:134,67:0.33:201
chr6	51914898	rs9395759	T	C	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	51914956	rs9370096	G	A	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:81,50:0.38:131
chr6	51917968	rs4715271	T	G	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:92,139:0.60:231
chr6	51923409	rs4715272	A	T	4568.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:131,204:0.61:335
chr6	51924774	rs1896976	A	G	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr6	51929931	.	TTATA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=-0.000;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr6	51930886	rs5876252	T	TA	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-1.761;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:100,47:0.32:147
chr6	51935703	rs11969034	T	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr6	51935747	rs17576809	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,36:0.34:107
chr6	51936846	rs3936986	T	C	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-1.408;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:128,65:0.34:193
chr6	51944612	.	G	A	3592.77	.	AC=1;AF=0.500;AN=2;DP=234;set=Intersection	GT:AD:AF:DP	0/1:72,162:0.69:234
chr6	51944847	rs1892274	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr6	51947257	rs6901799	G	A	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:43,107:0.71:150
chr6	51949862	rs9370097	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:32,12:0.27:44
chr6	52109408	rs3215541	GT	G	102.74	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr6	52131254	rs10807441	C	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr6	52137313	rs12207056	C	T	3859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.399;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:104,179:0.63:283
chr6	52138226	rs2235714	C	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr6	52138496	.	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.75;ReadPosRankSum=0.140;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	52141670	rs3765446	A	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	52142582	rs13191372	G	A	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.83;ReadPosRankSum=-0.671;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:42,60:0.59:102
chr6	52144081	rs2073036	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr6	52147692	rs2307322	T	A	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.457;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:20,35:0.64:55
chr6	52149697	rs183289452	C	G	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr6	52268890	rs17591381	G	A	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:315,178:0.36:493
chr6	52269151	rs655113	T	C	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr6	52285394	rs12206743	G	C	5972.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:128,261:0.67:389
chr6	52355206	rs2273120	T	C	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	52387719	rs17664241	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:106,59:0.36:165
chr6	52541811	rs13211066	G	A	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.743;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.973;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:128,49:0.28:177
chr6	52546789	rs2281484	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr6	52617731	rs2180314	C	G	6251.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:187,292:0.61:479
chr6	52620013	rs10626189	C	CT	82.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.920;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	52622814	rs2254050	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr6	52657552	rs4715326	C	T	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr6	52658962	rs1051775	T	C	3776.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:384,215:0.36:599
chr6	52661267	rs68117645	ATATATATATATATATATATATGTGTGTGTG	A	381.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.72;ReadPosRankSum=1.109;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr6	52662263	rs2397106	C	T	3474.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr6	52697576	rs4715344	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr6	52697601	rs55815585	T	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:70,45:0.39:115
chr6	52697825	rs4715345	A	C	8831.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.54;QD=42.87;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	52697834	rs4715346	C	A	8499.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=45.21;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	52701143	rs2397118	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	52702179	rs41273856	T	A	5368.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:119,238:0.67:357
chr6	52702324	rs4715350	T	C	15865.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr6	52843131	rs367836	G	T	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr6	52843477	rs375887	A	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr6	52847551	rs316133	G	C	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:85,155:0.65:240
chr6	52849146	rs316128	G	T	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr6	52849342	rs45507994	A	G	2465.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:259,140:0.35:399
chr6	52849481	rs11444456	C	CT	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.219;QD=8.35;ReadPosRankSum=-0.670;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:11,25:0.69:36
chr6	52938468	rs5876299	AT	A	598.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:3,35:0.92:38
chr6	52943841	rs35757290	TA	T	2089.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	52958479	rs2816350	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	52958667	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=1.835;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr6	52963071	rs2876	A	G	3536.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	52996708	rs9349655	C	G	1177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-1.079;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:23,56:0.71:79
chr6	52998788	rs2816346	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr6	52998834	rs2816345	C	T	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=0.657;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr6	52998856	rs2518573	T	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:139,66:0.32:205
chr6	52999239	rs7764947	T	G	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr6	53010182	rs9367511	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr6	53134104	rs3830806	C	CACAG	4244.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:70,107:0.60:177
chr6	53134164	rs70980834	C	CCTTTT	1416.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:40,38:0.49:78
chr6	53138203	rs35189966	TA	T	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.136;QD=5.33;ReadPosRankSum=-0.062;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr6	53138260	rs9463895	G	A	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr6	53140161	rs2294862	G	A	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	53140928	rs2294864	T	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr6	53152642	rs6458913	G	A	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr6	53152758	rs6907982	A	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:82,131:0.62:213
chr6	53152845	rs3817960	T	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr6	53160383	rs3736732	G	T	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:141,216:0.61:357
chr6	53365019	rs661346	G	C	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr6	53409451	.	C	CCCT	4200.73	.	AC=2;AF=1.00;AN=2;DP=230;set=Intersection	GT:AD:AF:DP	1/1:11,159:0.94:170
chr6	53516876	rs6928338	T	G	11075.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr6	53519062	rs10948758	A	G	13599.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr6	53519605	rs3799260	C	T	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr6	53519857	rs12210809	G	A	8335.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr6	53520088	rs2038939	T	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	53520124	rs2038940	A	G	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	53707098	rs4286781	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr6	53762293	rs71775183	GA	G	781.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	53764818	.	GTT	G	504.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=4.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.83;ReadPosRankSum=-1.657;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:5,29:0.85:34
chr6	53764831	.	T	G	509.03	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=-0.574;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr6	53767652	rs79494319	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	53784275	.	T	TTAA	1064.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.474;MLEAC=1;MLEAF=0.500;MQ=60.94;MQRankSum=0.490;QD=19.72;ReadPosRankSum=-0.153;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:4,50:0.93:54
chr6	53847528	rs9370250	G	A	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	54002231	rs2754779	A	C	11802.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr6	54003184	rs2754780	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	54013765	rs2145755	A	G	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	54054686	rs6934690	T	A	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	54067088	rs67016420	AT	A	2795.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=35.39;SOR=1.795;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	54079968	rs11757700	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	54095423	rs816384	T	C	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	54186147	rs1058768	T	C	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr6	54191686	rs41276062	C	T	7829.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr6	54191970	rs1848440	T	A	4918.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	54208293	rs45620541	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	54214779	rs3736350	A	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	54219290	rs45545344	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	54219326	rs3195579	G	A	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	55214808	rs34159730	C	CA	628.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	55215079	rs1032767	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	55216005	rs870806	G	A	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	55264362	rs6936510	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	55266625	rs9370418	T	C	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	55266722	rs12529201	C	T	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=1.279;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	55266796	rs10948913	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	55381262	rs6459082	G	A	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	55406399	rs9367638	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	55623944	rs202201755	A	C	936.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.124;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-0.902;SOR=0.456;set=HC	GT:AD:AF:DP	1/1:3,62:0.95:65
chr6	55623946	.	A	C	935.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.124;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-2.325;SOR=0.456;set=HC	GT:AD:AF:DP	1/1:3,62:0.95:65
chr6	55623982	rs201357101	C	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.41;ReadPosRankSum=-0.940;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	55639028	rs41271330	G	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-1.076;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:41,37:0.47:78
chr6	55730183	rs146371955	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:165,91:0.36:256
chr6	55739711	rs200061411	T	TA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.737;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:91,27:0.23:118
chr6	55929347	rs2235735	T	C	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:87,62:0.42:149
chr6	55966418	rs4379279	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr6	56044578	rs2038149	T	C	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:232,126:0.35:358
chr6	56045043	rs2038150	C	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	56327856	rs144012429	C	T	1249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=-0.812;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:166,74:0.31:240
chr6	56328769	rs73747832	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr6	56329654	rs41271850	T	C	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr6	56333635	rs144996180	G	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr6	56333876	rs41271854	A	C	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr6	56334904	rs41271856	G	C	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:202,109:0.35:311
chr6	56341981	rs2273973	G	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr6	56365814	rs4283892	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	56368739	rs199766526	G	GA	2263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.270;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:172,100:0.37:272
chr6	56369002	rs58730144	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr6	56374368	rs116835505	A	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:71,40:0.36:111
chr6	56374754	rs9296849	C	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr6	56381821	rs76958725	G	T	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.555;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-1.818;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr6	56381825	rs114933767	T	C	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.69;ReadPosRankSum=-1.618;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr6	56381912	rs4715626	G	A	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:78,118:0.60:196
chr6	56394173	rs9357922	T	C	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	56394669	rs3800026	A	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr6	56395051	rs6939305	C	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	56397391	rs4256439	G	A	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr6	56417282	rs4715630	C	T	9837.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr6	56417545	rs4715631	T	C	7164.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:146,318:0.69:464
chr6	56420158	rs62621210	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:151,70:0.32:221
chr6	56420538	rs11756977	C	T	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:198,94:0.32:292
chr6	56422322	rs201921834	AG	A	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.935;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.063;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr6	56425284	rs2067543	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr6	56425971	rs1884286	A	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr6	56426931	rs9367689	C	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr6	56427095	rs79573569	C	CTGAGTGTTGAAA	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.455;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr6	56437465	rs1014309	T	C	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:66,30:0.31:96
chr6	56437902	rs2144405	C	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr6	56459082	rs116762675	A	C	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-1.026;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:56,18:0.24:74
chr6	56467586	rs11751914	G	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	56470690	rs13209548	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:117,59:0.34:176
chr6	56471402	rs9382658	G	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:154,80:0.34:234
chr6	56471615	rs45442999	G	A	2435.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:241,131:0.35:372
chr6	56474219	rs191948657	T	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,49:0.39:127
chr6	56476182	rs111382742	T	TAAGTA	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr6	56476262	rs7747060	T	C	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=0.771;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr6	56480500	rs150191284	T	C	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:234,133:0.36:367
chr6	56481632	rs115542549	T	C	2727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-1.162;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:314,160:0.34:474
chr6	56482801	rs6459166	C	G	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-0.169;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:150,64:0.30:214
chr6	56484758	rs2230862	C	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:187,94:0.33:281
chr6	56489476	rs41271872	C	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr6	56491892	rs41271876	A	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr6	56493073	rs41271878	C	G	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr6	56494071	rs112640831	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.460;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:84,25:0.23:109
chr6	56496257	rs45553042	G	T	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	56499189	rs6941626	T	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,71:0.37:190
chr6	56499779	rs115872381	G	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	56505063	rs2144407	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:252,126:0.33:378
chr6	56507135	rs1024195	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:86,42:0.33:128
chr6	56507489	rs1024196	A	G	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:333,159:0.32:492
chr6	56510526	rs7760503	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr6	56513331	rs58487319	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr6	56515787	rs41267673	G	A	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:283,176:0.38:459
chr6	56557344	rs13205013	G	C	6334.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr6	56557411	rs35637749	G	A	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr6	56557822	rs34724718	T	C	9107.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr6	56566621	rs13206849	T	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.82;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	56566630	rs13191164	G	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.32;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	56569104	rs16888128	A	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	56600121	rs41267675	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr6	56818706	rs986245	T	C	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	56873069	rs6925819	T	C	8156.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr6	56917520	rs36113897	T	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,18:0.26:70
chr6	56964127	rs13206250	A	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr6	57191021	rs11381745	A	AG	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	57244672	rs5011404	G	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr6	57244780	rs5011403	G	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:94,93:0.50:187
chr6	57244830	rs5011402	T	A	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:62,65:0.51:127
chr6	57244893	rs5011401	T	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr6	57246708	rs6913779	G	T	1222.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr6	57246773	rs113849959	T	TAGG	6928.73	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:142,168:0.54:310
chr6	57246785	rs62415470	A	C	4773.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:181,218:0.55:399
chr6	57246815	rs6936571	T	C	7917.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:222,348:0.61:570
chr6	57246884	rs6913546	A	G	11247.77	.	AC=1;AF=0.500;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	0/1:395,538:0.58:933
chr6	57246969	rs4256440	G	A	5711.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:208,256:0.55:464
chr6	57246982	rs4585567	G	T	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:159,207:0.57:366
chr6	57247022	rs4382263	C	T	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:75,107:0.59:182
chr6	57254789	rs2397264	A	G	3495.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:107,165:0.61:272
chr6	57254811	rs941685	A	G	15562.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr6	57254825	rs10456742	T	C	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:384,191:0.33:575
chr6	57254839	rs2397265	T	C	2566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.032;QD=3.68;ReadPosRankSum=-0.258;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:517,180:0.26:697
chr6	57254927	rs2397266	A	G	14240.77	.	AC=1;AF=0.500;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	0/1:422,433:0.51:855
chr6	57254950	rs5876554	A	AT	12197.73	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:319,317:0.50:636
chr6	57254955	rs2894842	G	A	10906.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:295,277:0.48:572
chr6	57254986	rs2397267	G	A	5001.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:173,148:0.46:321
chr6	57255001	rs2894843	C	A	4362.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:140,112:0.44:252
chr6	57255015	rs2894844	G	C	3473.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:101,86:0.46:187
chr6	57255016	rs5876555	A	AC	3392.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:102,84:0.45:186
chr6	57255032	rs7769711	C	G	2175.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr6	57372104	rs2024986	T	C	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.291;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=9.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.04;ReadPosRankSum=-0.137;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr6	57372116	rs9382768	T	C	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.46;ReadPosRankSum=0.821;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:33,53:0.62:86
chr6	57372126	rs9396314	C	G	1033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.415;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:65,45:0.41:110
chr6	57372199	rs9382769	T	C	7313.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:195,329:0.63:524
chr6	57372361	rs9382770	C	A	9277.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:231,335:0.59:566
chr6	57372365	rs9396315	A	G	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.957;QD=2.00;ReadPosRankSum=-0.485;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:441,101:0.19:542
chr6	57372374	rs68090917	CT	C	4012.73	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:320,155:0.33:475
chr6	57372436	rs9382771	G	C	3794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.149;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=1.347;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:82,118:0.59:200
chr6	57372436	.	GC	CT	833	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=1;MGOF=29;MMLQ=28;MQ=59.98;NF=15;NR=40;PP=833;QD=16.1175977248;SC=TGGTGAAACCGCTTCAATTAC;SbPval=0.75;Source=Platypus;TC=190;TCF=61;TCR=129;TR=55;WE=57372445;WS=57372426;set=Platypus	GT:AD:AF:DP	1/0:135,55:0.29:190
chr6	57372437	rs79221898	C	T	1229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=2.341;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:133,64:0.32:197
chr6	57372456	rs35141035	AT	A	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=0.796;SOR=1.413;set=HC	GT:AD:AF:DP	0/1:62,32:0.34:94
chr6	57372480	rs79601039	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr6	57372502	rs9349872	G	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.836;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr6	57372510	rs77697887	T	G	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.966;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-2.160;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	57372514	rs77868044	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.108;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr6	57392963	rs927193	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr6	57393029	rs77090024	T	A	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.879;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.932;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr6	57393034	rs75127850	G	T	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.472;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=1.343;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr6	57393040	rs74756458	A	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.997;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr6	57393054	rs75725892	G	A	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=2.258;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:57,19:0.25:76
chr6	57393074	rs73752376	A	G	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=1.606;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr6	57393092	rs73752377	T	A	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.098;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr6	57393125	rs927192	A	G	1869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.946;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=4.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=1.021;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:89,96:0.52:185
chr6	57393160	rs76686926	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-2.628;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:159,33:0.17:192
chr6	57393199	rs2397502	C	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:107,53:0.33:160
chr6	57393216	rs2397503	G	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,63:0.54:117
chr6	57393222	rs111989160	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.136;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr6	57393228	rs112156516	G	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.703;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:87,12:0.12:99
chr6	57393278	rs75909609	T	C	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr6	57393323	rs12198995	T	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr6	57393329	rs76564922	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.696;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.000;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:16,3:0.16:19
chr6	57398047	rs76081480	A	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,32:0.39:83
chr6	57398081	rs7753294	T	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:135,45:0.25:180
chr6	57398117	.	T	TA	2321	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=1;MGOF=42;MMLQ=28;MQ=60.0;NF=65;NR=56;PP=2321;QD=19.5371900826;SC=AAAACTCTACTGTTTTTTCTT;SbPval=0.13;Source=Platypus;TC=265;TCF=113;TCR=152;TR=121;WE=57398126;WS=57398107;set=Platypus	GT:AD:AF:DP	1/0:144,121:0.46:265
chr6	57398154	rs80081867	T	C	8235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=1.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.100;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:331,221:0.40:552
chr6	57398157	rs9476080	A	G	8407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=2.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=1.871;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:339,220:0.39:559
chr6	57398163	rs9476081	A	G	8485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=2.532;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:366,231:0.39:597
chr6	57398186	rs147954160	G	GA	2598.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.670;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=1.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=5.351;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:485,160:0.25:645
chr6	57398201	rs62398997	T	C	6180.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:454,214:0.32:668
chr6	57398226	rs77436138	T	A	4348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.977;ClippingRankSum=0.000;DB;DP=647;ExcessHet=3.0103;FS=4.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-3.662;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:471,149:0.24:620
chr6	57398264	rs62398998	A	G	1647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=9.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.708;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:361,102:0.22:463
chr6	57398270	rs62398999	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=6.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=2.281;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:399,66:0.14:465
chr6	57398335	rs4715745	A	T	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:134,156:0.54:290
chr6	57398385	rs11455120	A	AT	518.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=8.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.946;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:72,27:0.27:99
chr6	57398395	rs78658694	A	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.485;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=8.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.520;SOR=0.170;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr6	57398412	rs6937166	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,22:0.35:63
chr6	57415121	rs7741368	G	A	2579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.468;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.763;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:212,76:0.26:288
chr6	57415141	rs11346545	TA	T	3024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.339;QD=7.05;ReadPosRankSum=0.033;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:315,114:0.27:429
chr6	57415161	rs493737	T	G	10102.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:259,332:0.56:591
chr6	57415173	rs496135	G	A	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=0.614;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.446;QD=3.60;ReadPosRankSum=2.458;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:508,172:0.25:680
chr6	57415223	rs7741129	A	T	7514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801;ClippingRankSum=0.000;DB;DP=867;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.293;QD=8.72;ReadPosRankSum=-0.405;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:629,233:0.27:862
chr6	57415231	rs7761558	T	C	7280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=858;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.359;QD=8.54;ReadPosRankSum=0.010;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:629,224:0.26:853
chr6	57415309	rs7741689	G	C	4681.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:186,218:0.54:404
chr6	57415349	rs11412269	G	GA	2147.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:88,86:0.49:174
chr6	57415403	rs11412270	T	TA	279.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr6	57415420	rs9349880	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.176;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr6	57415425	rs7741460	A	T	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.649;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-1.430;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr6	57433425	rs2397541	C	T	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;MQ=60.18;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr6	57433455	rs2151625	C	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.584;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.687;QD=3.12;ReadPosRankSum=-0.350;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr6	57433501	rs201029322	AAAAAAAG	A	1452.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:118,45:0.28:163
chr6	57433525	rs518931	T	G	1356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-1.013;QD=7.37;ReadPosRankSum=-1.019;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:137,47:0.26:184
chr6	57433544	rs562762	G	A	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=-0.965;QD=6.92;ReadPosRankSum=-0.821;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:138,43:0.24:181
chr6	57433616	rs518037	T	C	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr6	57433669	rs4464799	A	G	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr6	57457668	rs62399096	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	57457703	rs111977760	A	AG	271.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	57457704	rs5008381	A	T	280.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	57457737	rs9476161	A	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.410;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=8.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.263;SOR=2.249;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr6	57457744	rs4110758	A	G	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=9.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=-4.080;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr6	57457779	rs4110759	G	C	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr6	57457843	rs4110760	T	G	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.575;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:116,54:0.32:170
chr6	57457947	rs2397945	A	C	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.437;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:91,34:0.27:125
chr6	57457958	rs2397562	G	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.401;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:105,19:0.15:124
chr6	57457960	rs2093718	A	G	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-1.228;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:83,42:0.34:125
chr6	57457973	rs74595165	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.625;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:84,31:0.27:115
chr6	57457974	rs4598061	T	G	2223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-0.707;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:47,67:0.59:114
chr6	57457995	rs4501418	G	C	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.01;ReadPosRankSum=0.386;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:37,48:0.56:85
chr6	57458001	rs78499845	A	G	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=-0.374;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:54,24:0.31:78
chr6	57458044	rs4351265	A	C	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=6.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-1.208;SOR=0.203;set=HC	GT:AD:AF:DP	0/1:38,16:0.30:54
chr6	57467084	rs9885913	A	G	3945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.178;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=4.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-0.612;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:316,119:0.27:435
chr6	57467093	rs9885916	A	G	4324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.190;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.893;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:353,137:0.28:490
chr6	57467100	rs4535533	G	C	9567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.259;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=1.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=0.956;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:227,306:0.57:533
chr6	57467107	rs9885751	C	T	2981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.901;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=4.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.869;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:408,163:0.29:571
chr6	57467175	rs4406234	A	G	4073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=1108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.740;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:823,279:0.25:1102
chr6	57467279	rs6459263	T	C	7919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;ClippingRankSum=0.000;DB;DP=721;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=1.085;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:489,229:0.32:718
chr6	57467282	rs6459264	T	C	7812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=1.072;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:465,222:0.32:687
chr6	57467303	rs1022846	A	G	8771.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:88,364:0.81:452
chr6	57467317	rs4637646	G	T	3296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-0.369;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:255,103:0.29:358
chr6	57467323	rs4424069	G	C	3219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.035;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.122;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:231,91:0.28:322
chr6	57472212	rs9296899	T	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr6	57472255	rs9296900	C	T	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:80,115:0.59:195
chr6	57472299	rs9396358	A	G	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:280,117:0.29:397
chr6	57472315	rs9296901	A	G	8612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.65;ReadPosRankSum=-1.645;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:197,291:0.60:488
chr6	57472316	rs9382818	G	A	2125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-0.335;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:359,132:0.27:491
chr6	57472344	rs111230027	A	AT	3046.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=698;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=2.098;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:485,202:0.29:687
chr6	57472476	rs9382819	T	C	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-1.195;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:322,122:0.27:444
chr6	57472488	rs9382820	C	T	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.150;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:284,101:0.26:385
chr6	57472495	rs62400219	C	G	1446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.672;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-1.874;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:241,91:0.27:332
chr6	57472533	rs9367767	T	C	2692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.141;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=6.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=0.248;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:78,88:0.53:166
chr6	57472533	.	TT	CC	1420	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=2;MGOF=14;MMLQ=28;MQ=60.0;NF=6;NR=36;PP=1420;QD=35.0825684491;SC=ATGCTGTGTATTACTTGTCAG;SbPval=0.96;Source=Platypus;TC=152;TCF=41;TCR=111;TR=42;WE=57472542;WS=57472523;set=Platypus	GT:AD:AF:DP	1/0:110,42:0.28:152
chr6	57472534	rs74369127	T	C	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.866;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=9.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=0.715;SOR=1.657;set=HC	GT:AD:AF:DP	0/1:117,44:0.27:161
chr6	57498894	rs3846934	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,66:0.67:99
chr6	57498944	rs3846935	G	C	2425.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:66,110:0.62:176
chr6	57499042	rs5876654	A	AT	597.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=1.275;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:134,48:0.26:182
chr6	57512340	rs4364484	C	T	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr6	57512352	rs5001077	A	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr6	57512439	rs4294006	T	C	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:254,110:0.30:364
chr6	57512476	rs4307164	G	A	8612.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:294,364:0.55:658
chr6	57512510	rs4294007	T	G	19396.77	.	AC=1;AF=0.500;AN=2;DB;DP=1012;set=Intersection	GT:AD:AF:DP	0/1:193,814:0.81:1007
chr6	57512529	rs5001076	C	A	5222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.819;ClippingRankSum=0.000;DB;DP=1274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.877;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:938,334:0.26:1272
chr6	57512565	rs4294008	T	C	24530.77	.	AC=1;AF=0.500;AN=2;DB;DP=1902;set=Intersection	GT:AD:AF:DP	0/1:749,1147:0.60:1896
chr6	57512678	rs4398719	G	A	18079.77	.	AC=1;AF=0.500;AN=2;DB;DP=1361;set=Intersection	GT:AD:AF:DP	0/1:546,811:0.60:1357
chr6	57512711	rs5001484	G	C	8206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.54;ReadPosRankSum=0.571;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:535,244:0.31:779
chr6	57512718	rs5001483	T	A	7917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.342;ClippingRankSum=0.000;DB;DP=722;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=0.146;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:499,222:0.31:721
chr6	57512775	rs7773110	T	G	5530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.854;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.76;ReadPosRankSum=0.430;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:100,143:0.59:243
chr6	57512779	rs76296076	G	T	5539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.51;ReadPosRankSum=0.603;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:93,133:0.59:226
chr6	57512787	.	T	TCACCAAGGC	4862.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=4.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.00;ReadPosRankSum=1.753;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:80,107:0.57:187
chr6	57512788	.	T	TTA	4709.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.616;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=0.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.38;ReadPosRankSum=-2.011;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:80,92:0.53:172
chr6	57512792	rs372064495	T	C	3422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.003;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=-2.330;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:75,81:0.52:156
chr6	62390916	rs1204114	T	C	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr6	62407067	rs1555167	G	T	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:207,182:0.47:389
chr6	62523887	rs35068148	T	TA	4991.73	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:364,286:0.44:650
chr6	62526443	rs1005815	C	T	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=-0.049;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr6	62611356	rs67450220	ACAAAACG	A	302.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.524;QD=20.18;ReadPosRankSum=-1.246;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	62757987	rs9346001	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr6	62887031	rs9346218	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr6	62887099	rs6921170	C	T	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr6	62995920	rs16883133	T	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr6	63921361	rs4710420	A	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	64289938	rs56188808	AT	A	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.387;QD=2.88;ReadPosRankSum=1.714;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:91,54:0.37:145
chr6	64356711	.	CTTTT	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.579;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr6	64419024	.	CT	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=4.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.595;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:59,32:0.35:91
chr6	64791847	.	A	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-0.889;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:42,36:0.46:78
chr6	65016977	rs35395170	TGA	T	1795.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.50;ReadPosRankSum=1.152;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:4,59:0.94:63
chr6	65098768	rs587278	A	G	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr6	65300516	rs57312007	T	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:63,75:0.54:138
chr6	65301504	rs624851	A	G	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:195,176:0.47:371
chr6	65302915	rs11331907	GA	G	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr6	65336143	rs9445051	G	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=1.078;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr6	65596759	rs7743515	G	A	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	65611952	rs59518422	T	TATTA	2411.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	65622463	rs9294631	A	G	15344.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:1,576:1.00:577
chr6	65622662	rs9445437	G	C	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	65767633	rs142590049	G	GA	474.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:75,38:0.34:113
chr6	65767634	rs45628235	G	A	1056.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:65,45:0.41:110
chr6	66005740	rs35045551	G	GA,GAA	4733.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.082;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.523;QD=20.67;ReadPosRankSum=-1.894;SOR=0.896;set=HC	GT:AD:AF:DP	1/2:13,132,84:0.58,0.37:229
chr6	66005888	rs9342464	C	T	12453.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr6	66005970	rs9345601	G	A	9299.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr6	66045077	rs1502965	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr6	66045118	rs1502964	T	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	66053835	rs1502963	T	G	263.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	66063513	rs1936439	G	A	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:158,173:0.52:331
chr6	66112409	rs974110	A	G	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=2.507;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr6	66115281	rs34154043	G	GAAA	2669.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.648;QD=14.51;ReadPosRankSum=0.117;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:97,87:0.47:184
chr6	66204945	rs12193967	G	A	9781.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr6	68599166	rs9342670	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.588;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr6	69654013	rs139383862	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr6	69666195	rs28734080	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chr6	69666684	rs1932618	A	G	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=-0.202;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:27,52:0.66:79
chr6	69724069	rs1336655	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr6	69728522	rs2785573	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	69759148	rs618372	A	T	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	69772817	rs2793459	C	G	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:78,130:0.62:208
chr6	69785765	rs3757050	C	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	69786046	rs35445308	G	GA	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	69943418	rs3215840	A	AG	2814.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,80:0.66:122
chr6	70071173	rs913543	G	A	13507.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr6	70386320	rs3214021	C	T	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:208,137:0.40:345
chr6	70411157	rs2445969	G	A	121.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	70639637	rs11421187	T	TA	818.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,49:0.57:86
chr6	70642660	rs2345783	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.199;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr6	70646851	rs34179513	G	A	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:114,73:0.39:187
chr6	70778378	rs2224513	GC	CT	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	70812123	rs7772672	A	G	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr6	70812273	rs11759810	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr6	70851789	rs13204209	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr6	70852493	rs9342783	A	G	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	70852607	rs3831024	C	CT	581.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr6	70852841	rs2296013	A	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr6	70854183	rs9364074	A	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.928;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=-2.197;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr6	70854208	rs58591338	CAG	C	826.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr6	70854924	rs3841703	A	AT	120.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr6	70856536	rs7762409	C	T	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr6	70856922	.	T	C	452.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr6	70861135	rs3818327	T	G	93.81	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	70866421	rs3736843	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	70866609	rs2229799	C	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	70873331	rs2296010	G	A	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	70875976	rs802174	T	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	70876046	rs802175	T	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	70894909	rs2296005	A	T	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	70897698	rs3749913	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	70909252	rs5877242	AT	A	330.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	70909763	rs3806064	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	70909779	rs3806065	T	C	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	70916830	rs3215860	AT	A	1618.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr6	70916888	rs1200576	A	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	70916998	rs1736	G	A	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	70926898	rs1200569	G	A	3820.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	70926933	rs2881343	G	C	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	70944123	rs12197487	G	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr6	70944465	rs12191701	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr6	70949079	rs13216129	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=1.019;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr6	70951103	rs13202029	A	G	3136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-0.253;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:316,183:0.37:499
chr6	70961833	rs1135056	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr6	70962044	rs519068	A	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:83,54:0.39:137
chr6	70962164	rs9446215	T	C	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr6	70963124	rs9346373	A	C	5944.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:174,284:0.62:458
chr6	70963156	rs701690	T	G	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=0.660;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:263,162:0.38:425
chr6	70963232	rs701689	A	G	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:105,81:0.44:186
chr6	70963279	rs701688	T	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr6	70964745	rs13219431	G	T	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:331,207:0.38:538
chr6	70965125	rs633762	A	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr6	70966421	rs34557832	C	CA	844.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.956;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:112,70:0.38:182
chr6	70970251	rs34147259	C	CA	100.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.839;QD=3.58;ReadPosRankSum=-0.279;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr6	70970299	rs2024730	C	T	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=1.273;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:57,30:0.34:87
chr6	70976538	rs883708	A	G	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:194,91:0.32:285
chr6	70979125	rs551470	A	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	70979193	rs550675	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:33,8:0.20:41
chr6	70979324	rs6935778	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:58,22:0.28:80
chr6	70983644	rs151025983	TAATA	T	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.861;QD=12.16;ReadPosRankSum=1.045;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr6	70984436	rs592121	A	G	3033.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:113,144:0.56:257
chr6	70984562	rs603304	TG	CA	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr6	70989703	rs3806099	A	G	6108.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:158,289:0.65:447
chr6	70990435	rs67240674	T	TC	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.717;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.728;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.762;QD=3.40;ReadPosRankSum=-2.054;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr6	70990670	rs41303785	G	A	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:82,149:0.65:231
chr6	70991003	rs34962262	GA	G	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.257;QD=3.08;ReadPosRankSum=-0.760;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr6	71011831	rs2242589	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-0.531;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr6	71137884	rs13202450	G	A	85.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	71238105	rs2747701	A	G	3115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=0.131;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:80,146:0.65:226
chr6	71246206	rs34238069	G	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr6	71298533	rs13654	A	G	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	71378188	rs781984	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	71482975	rs1413353	G	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	71547371	rs12199707	C	T	53.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.76;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	71665473	rs9455275	A	G	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.38;ReadPosRankSum=0.034;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr6	71665479	rs62420336	G	A	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.16;ReadPosRankSum=-0.257;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr6	71665986	rs1574490	G	A	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr6	71666146	rs1320315	T	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr6	72084666	.	CATATATAAAT	C	97	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.49;QD=24.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	72091267	rs5877279	T	TTA	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr6	72836421	rs2463696	A	C	2486.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.201;QD=24.87;ReadPosRankSum=1.006;SOR=0.429;set=HC	GT:AD:AF:DP	1/1:1,99:0.99:100
chr6	72836464	.	TAA	T	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.469;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr6	72858416	rs151080929	GTT	G,GT	6446.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=4.207;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.480;QD=20.53;ReadPosRankSum=0.029;SOR=0.802;set=HC	GT:AD:AF:DP	1/2:15,232,67:0.74,0.21:314
chr6	72889472	rs2249021	A	G	17693.77	.	AC=2;AF=1.00;AN=2;DB;DP=659;set=Intersection	GT:AD:AF:DP	1/1:0,658:1.00:658
chr6	72892257	rs2463730	A	G	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	72945492	rs2807519	C	T	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	72945603	rs138366781	A	ATTTTC	1465.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	72947774	rs2807525	C	T	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	72962352	rs9351902	A	G	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	72968609	rs6923891	C	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	72984277	rs4504440	G	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	73108568	rs191807786	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr6	73108872	rs67994138	AAG	A	2739.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	73332040	rs3734212	C	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	73516397	rs9446758	A	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	73815036	.	A	T	1931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DP=515;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=1.537;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:381,134:0.26:515
chr6	73821239	rs2000205	T	C	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr6	73830423	rs1891404	A	G	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	74072681	rs9446890	G	C	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:111,100:0.47:211
chr6	74073531	rs561930	C	G	5384.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:249,254:0.50:503
chr6	74079024	rs496530	A	G	2769.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:207,143:0.41:350
chr6	74079041	rs497243	A	C	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,352:1.00:353
chr6	74104495	rs3832419	C	CG	794.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr6	74104557	rs558198	C	G	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:108,114:0.51:222
chr6	74110212	rs3757106	T	G	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr6	74111524	.	CAA	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.581;QD=6.61;ReadPosRankSum=-1.085;SOR=1.259;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr6	74114365	rs5877364	AT	A	2621.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr6	74115935	rs57549301	C	CGG	1118.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr6	74119084	rs4708053	T	C	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	74123363	rs9442907	G	A	3344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-0.471;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:131,160:0.55:291
chr6	74125875	rs311686	A	G	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:120,88:0.42:208
chr6	74125888	rs311685	A	G	3194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=0.935;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:125,88:0.41:213
chr6	74126084	rs311684	C	T	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr6	74135016	rs311678	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,39:0.41:95
chr6	74155346	rs610913	G	T	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:39,35:0.47:74
chr6	74155491	rs2985419	T	C	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr6	74161503	rs9446904	A	G	9426.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr6	74161801	rs9352000	G	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	74162010	rs34413328	CA	C	400.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr6	74171467	rs1713862	C	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	74181194	rs6453676	G	A	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.57;ReadPosRankSum=0.242;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:11,13:0.54:24
chr6	74183444	rs11417913	C	CT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.646;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.300;QD=6.99;ReadPosRankSum=0.586;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr6	74189574	rs7766570	G	A	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr6	74190448	rs2036039	T	C	5357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=0.828;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:344,286:0.45:630
chr6	74190692	rs4032699	GT	G	30.90	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=6.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	74201826	rs200573083	CAA	C	388.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=8.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=1.258;SOR=1.889;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	74202160	rs73452507	A	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr6	74228006	rs1874229	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:91,89:0.49:180
chr6	74228049	rs1874230	A	G	1575.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:82,78:0.49:160
chr6	74229258	rs2073466	G	T	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:209,206:0.50:415
chr6	74229405	rs4708060	C	A	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	74310231	rs11349241	CT	C	376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.320;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.598;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:37,44:0.54:81
chr6	74342113	rs72951366	A	T	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.875;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr6	74432923	rs56093139	C	T	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	74521947	rs2917862	C	T	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:185,176:0.49:361
chr6	74528293	rs3005506	A	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr6	74530421	rs3005537	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:120,94:0.44:214
chr6	74533192	rs2917887	T	G	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	75795122	rs112607771	G	GCACA	1897.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:154,64:0.29:218
chr6	75796364	.	GTA	G	447.73	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr6	75797302	rs970547	C	T	1180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.671;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-1.214;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:72,62:0.46:134
chr6	75798722	rs672648	C	A	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=0.708;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:80,33:0.29:113
chr6	75811880	rs556674	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr6	75827028	rs17186509	T	C	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr6	75830974	rs499018	G	C	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:162,145:0.47:307
chr6	75833876	rs240722	C	A	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:104,108:0.51:212
chr6	75834860	rs117038107	G	A	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:183,193:0.51:376
chr6	75841722	rs594012	A	T	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:187,167:0.47:354
chr6	75843845	rs1332778	T	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr6	75890933	rs34433354	T	TA	337.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=-1.861;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr6	75893457	rs36085827	TA	T	1064.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr6	75901292	rs743003	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	75904455	rs240433	A	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.237;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	75950109	rs56897555	T	TA	946.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=1.046;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:32,69:0.68:101
chr6	75951719	rs240419	A	C	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	75966269	rs418485	A	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	75968720	rs147523	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	75977591	rs240395	T	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	76022082	rs9352202	A	G	15614.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.243;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr6	76022090	rs9343281	G	C	16422.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=1.115;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr6	76063133	rs6913979	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	76124792	rs2808201	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	76138146	rs5877455	C	CAG	3852.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	76333486	rs655471	G	A	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	76344431	rs17414086	C	T	2446.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:92,116:0.56:208
chr6	76357426	rs9352231	C	T	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=4.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.000;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:58,27:0.32:85
chr6	76357657	rs613562	T	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr6	76369054	rs507662	A	G	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	76376552	rs17414687	G	A	7271.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:171,338:0.66:509
chr6	76385330	rs17792195	G	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr6	76386712	rs35745959	GT	G	203.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.52;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	76387102	rs11752694	A	T	92.84	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	76421003	rs3765140	A	G	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.247;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:16,43:0.73:59
chr6	76425288	rs9250	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr6	76538403	rs1280052	G	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.379;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr6	76545684	rs12210963	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr6	76550237	rs12216518	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr6	76550839	.	G	GT	82.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr6	76554593	rs7760587	G	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	76558358	rs9350601	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr6	76566734	rs3798439	T	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	76576527	rs6453845	G	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	76583113	rs9443195	T	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr6	76595634	rs13211391	C	A	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-0.319;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr6	76604573	rs3798429	T	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr6	76604797	rs3798427	A	G	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.122;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-1.368;SOR=0.121;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr6	76607983	rs720862	T	A	376.79	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr6	76617511	.	A	ATGTG	672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=13.45;ReadPosRankSum=1.141;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr6	76633385	rs3778005	C	T	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.459;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:33,58:0.64:91
chr6	76640781	rs3734313	C	T	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:153,101:0.40:254
chr6	76644527	rs9360960	C	T	1469.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,59:0.73:81
chr6	76656978	rs3215818	AT	A	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr6	76728583	rs377755519	TA	T	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.417;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr6	76744298	rs2274348	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr6	76782049	rs1320537	C	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	78171941	rs6297	C	T	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr6	79577644	rs9350789	A	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	79595097	rs6908105	A	G	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr6	79595167	rs146020132	A	ACTTAT	4092.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	79612744	rs35533616	CA	C	5399.73	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:490,214:0.30:704
chr6	79612800	rs9352675	G	A	9164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-2.571;QD=15.00;ReadPosRankSum=0.659;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:191,420:0.69:611
chr6	79656562	rs2275291	A	T	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.240;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr6	79656570	rs2275290	G	A	910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.461;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:39,26:0.40:65
chr6	79657240	.	A	G	198.77	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	79657391	rs1984195	G	A	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.269;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:44,63:0.59:107
chr6	79664440	rs9443632	T	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr6	79664748	rs10455356	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	79675701	rs9350797	A	G	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:241,123:0.34:364
chr6	79679577	rs7742431	A	G	3336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=1.161;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:99,163:0.62:262
chr6	79695029	rs1890229	C	T	1559.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr6	79708000	rs7747479	A	C	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr6	79752792	rs9343863	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:18,61:0.77:79
chr6	79913379	rs67281239	GA	G	243.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.524;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr6	79918309	rs9341761	G	A	7268.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	79944096	rs3076135	C	CAG	1608.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	79944355	rs9361504	T	G	8924.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr6	80228535	rs34068461	T	G	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.602;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.786;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:314,145:0.32:459
chr6	80228541	rs2655655	A	G	14406.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr6	80228673	rs2803195	T	C	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	80341320	rs6926093	CG	GC	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	80382916	rs1883878	G	T	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	80513565	rs149560703	G	GCTCTCTGATATGCCATC	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=6.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-1.650;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr6	80513740	rs45512496	C	T	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=-1.218;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr6	80517147	rs6915687	C	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:116,52:0.31:168
chr6	80517204	rs6915721	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr6	80579937	rs59710738	A	G	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr6	80580038	rs9361569	T	G	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr6	80631539	rs700483	T	A	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	80657086	rs62407622	C	G	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr6	80715838	rs240226	T	G	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:98,170:0.63:268
chr6	80720487	.	GCAT	G,GTACAT	640.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=27;set=Intersection	GT:AF:DP	0/1:0.56:27
chr6	80720491	rs199573945	T	TAAAGA	640.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.88;ReadPosRankSum=0.907;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	80720733	rs151587	G	A	131.03	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	80720742	rs239556	A	T	130.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	80721045	rs239558	A	G	32.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.94;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr6	80723198	rs239563	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	80724156	rs2295840	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=1.219;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr6	80724312	rs239566	A	G	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.269;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:25,51:0.67:76
chr6	80724462	rs239567	C	T	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr6	80741328	rs239584	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr6	80741418	rs239585	C	T	87.85	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr6	80750093	rs2295841	C	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	80750290	rs608962	C	T	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.189;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=1.656;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:20,56:0.74:76
chr6	80751780	rs652752	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr6	80774236	rs7771228	C	T	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	80775330	rs3812152	G	A	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:168,93:0.36:261
chr6	80777467	rs3828761	C	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:148,74:0.33:222
chr6	80777608	rs3967160	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:184,75:0.29:259
chr6	80777904	rs187624065	T	C	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:136,97:0.42:233
chr6	80778853	rs6923330	G	C	881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.693;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.813;QD=3.90;ReadPosRankSum=-1.420;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:170,56:0.25:226
chr6	80837239	rs9448893	A	G	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	80837253	rs9448894	G	T	3464.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.780;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=1.703;SOR=0.532;set=HC	GT:AD:AF:DP	1/1:25,172:0.87:197
chr6	80878508	rs139630496	A	AAGGAAGGGAGGGAGGGAGGG	1562.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.48;QD=74.42;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	80912746	rs3828753	C	T	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	81053642	rs926733	G	A	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	82459345	rs71888905	CT	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.261;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:64,25:0.28:89
chr6	82460760	rs118172700	T	C	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.381;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.751;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:164,69:0.30:233
chr6	82460943	rs17661047	T	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:80,39:0.33:119
chr6	82461727	.	ACCGCCGAAGTCGCCG	A,ACCGCCGAAGTCGCCGCCGCCGAAGTCGCCGCCGCCGAAGTCGCCG	3141.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=173;set=Intersection	GT:AF:DP	1/2:0.77,0.23:78
chr6	82883238	rs197245	T	C	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr6	82910247	rs4706938	C	G	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr6	82912153	rs7771978	T	G	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr6	82924645	rs6912968	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	83075914	rs700494	G	A	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:143,77:0.35:220
chr6	83666936	rs293531	T	C	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=1.718;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	83666943	rs293532	G	T	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=1.710;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	83733785	rs4235816	C	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	83752057	rs4612135	C	G	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	83754094	rs4455637	T	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	83754481	rs2027282	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	83775201	rs6915334	C	G	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	83822985	rs1925782	G	A	4578.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	83828724	rs2148010	G	A	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	83842084	.	CCA	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=4.444;QD=1.09;ReadPosRankSum=-0.764;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:238,35:0.13:273
chr6	83938484	rs112586895	T	TA	583.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:73,40:0.35:113
chr6	83938983	rs9449595	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.834;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr6	83949261	rs1180230	T	C	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr6	83949497	rs9444054	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr6	84055783	rs12215595	A	G	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	84061864	rs35778458	GA	G	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=2.633;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr6	84108065	rs4706990	A	T	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	84140728	rs28372717	G	A	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr6	84140772	rs28372716	TGGC	T	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	84140786	rs28372715	G	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr6	84233831	rs504593	G	A	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr6	84266041	rs4706182	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	84284664	rs6941004	G	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	84284880	rs2022269	T	A	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	84290137	rs147751300	TAAAG	T	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=1.114;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:13,51:0.80:64
chr6	84292139	rs1033653	T	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	84300997	rs2273363	A	G	3926.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:113,192:0.63:305
chr6	84302111	.	G	A	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-1.072;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:41,52:0.56:93
chr6	84302422	rs12530467	C	T	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr6	84302561	rs3818169	T	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr6	84303342	rs1033655	T	C	7222.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr6	84350654	rs217325	C	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr6	84350664	rs13192201	A	T	231.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	84366385	rs3037027	C	CAAG	6765.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	84368819	rs11368249	TA	T	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=3.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-0.214;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:143,63:0.31:206
chr6	84372214	rs34529044	AT	A	134.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	84375103	rs13192685	C	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	84375377	rs217302	G	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	84388381	.	G	C	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DP=470;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-1.239;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:358,112:0.24:470
chr6	84563085	rs9344362	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr6	84563147	rs9353143	G	A	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-3.119;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:62,47:0.43:109
chr6	84563281	rs2298291	T	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr6	84563410	rs2298290	G	A	1860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.754;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:217,109:0.33:326
chr6	84603226	rs9449718	T	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:114,51:0.31:165
chr6	84603422	rs3757003	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,23:0.32:73
chr6	84627810	rs7773061	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.672;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr6	84632338	rs58965806	C	CTT	98.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr6	84649734	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=17.072;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.644;QD=0.97;ReadPosRankSum=-2.302;SOR=1.416;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr6	84650364	rs965208	G	T	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=1.551;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chr6	84772845	rs17730011	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr6	84799185	rs2875382	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.063;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:219,56:0.20:275
chr6	84799300	rs7450001	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr6	84856409	rs9449804	T	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr6	84884867	rs9449824	A	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr6	84903225	rs9444146	G	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	84903394	rs16874323	C	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr6	84911336	rs2274092	C	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	84922681	rs75948054	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr6	84935866	rs9449851	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	85448103	rs761391	C	T	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=0.924;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr6	85472129	rs1883873	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr6	85473758	rs172562	C	T	11121.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr6	86180926	rs10944129	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr6	86199233	rs2229523	A	G	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:151,254:0.63:405
chr6	86199329	rs9450284	G	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:47,78:0.62:125
chr6	86215766	rs62443330	G	A	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr6	86224053	rs6454472	T	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr6	86240147	rs4640862	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr6	86246709	rs12193777	C	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chr6	86246716	rs59514276	T	TA	815.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr6	86248460	rs9294337	T	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr6	87795863	rs7745823	G	T	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr6	87796233	rs2011192	G	A	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	87797904	rs6155	T	C	943.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=10.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.637;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:135,56:0.29:191
chr6	87797953	rs200419004	AAAC	A	153.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-0.640;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr6	87797954	rs71944433	AAC	A	150.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-0.288;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr6	87879217	rs9351117	C	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	87879376	rs9444480	T	C	1859.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=1.965;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:37,85:0.70:122
chr6	87879376	.	TTC	CTT	1038	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=25;MQ=60.0;NF=36;NR=39;PP=1038;QD=14.5529049982;SC=TTTTGTTTTGTTCTGTTTTGA;SbPval=0.4;Source=Platypus;TC=112;TCF=58;TCR=54;TR=75;WE=87879386;WS=87879366;set=Platypus	GT:AD:AF:DP	1/0:37,75:0.67:112
chr6	87879378	rs9359738	C	T	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.90;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	87925824	rs71960404	TAGACACACACACACACACACACAC	T	3494.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:52,109:0.68:161
chr6	87925826	.	GACACACAC	G	271.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=8.583;MLEAC=1;MLEAF=0.500;MQ=63.43;MQRankSum=-4.065;QD=2.09;ReadPosRankSum=1.243;SOR=1.940;set=HC	GT:AD:AF:DP	0/1:109,21:0.16:130
chr6	87942975	rs16878729	A	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr6	87943281	rs16878734	A	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr6	87953340	rs200888322	C	CT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.605;QD=2.86;ReadPosRankSum=-0.514;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr6	87959212	rs41397850	T	G	2536.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:375,160:0.30:535
chr6	87965528	rs6908834	T	C	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:95,128:0.57:223
chr6	87968565	rs9362415	A	G	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr6	87969341	rs16878809	G	A	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.716;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.380;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:200,77:0.28:277
chr6	87969737	rs3734187	C	T	6310.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:177,292:0.62:469
chr6	87970301	rs3812132	C	G	11454.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr6	87994015	rs6934603	A	G	4145.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:71,181:0.72:252
chr6	87994101	rs41273281	G	A	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-1.721;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:253,79:0.24:332
chr6	87994550	rs41273283	G	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:166,68:0.29:234
chr6	87994572	rs4707358	G	A	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	88046967	rs45620640	A	G	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.678;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=10.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.859;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr6	88058675	rs9450659	A	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	88108048	rs67076383	AGAT	A	16639.73	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:259,418:0.62:677
chr6	88109304	rs1051550	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr6	88119528	rs11350856	TA	T	480.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr6	88119693	rs6454616	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:90,41:0.31:131
chr6	88119736	rs6915562	T	G	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:35,14:0.29:49
chr6	88120512	rs6909168	A	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr6	88125247	rs66632635	A	G	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.29;ReadPosRankSum=-0.623;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	88125581	rs13219364	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:151,85:0.36:236
chr6	88125701	.	GAAA	G	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.464;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-1.774;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	88127819	rs60934391	G	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=-0.328;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:50,38:0.43:88
chr6	88127819	.	GAG	AAA	1289	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=28;MQ=59.83;NF=23;NR=10;PP=1289;QD=40.6808446928;SC=TTTGATTGGGGAGAAAAACCC;SbPval=0.53;Source=Platypus;TC=81;TCF=57;TCR=24;TR=33;WE=88127829;WS=88127809;set=Platypus	GT:AD:AF:DP	1/0:48,33:0.41:81
chr6	88127821	rs57091345	G	A	1485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.33;ReadPosRankSum=-1.139;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:50,41:0.45:91
chr6	88128089	rs12528249	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:86,46:0.35:132
chr6	88136510	rs12529618	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=-0.566;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	88170710	rs73492299	A	T	1520.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:35,67:0.66:102
chr6	88182704	rs9450704	G	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	88210467	.	A	ATT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.541;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=0.457;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	88224029	rs5878032	CA	C	204.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;MQRankSum=2.521;QD=10.21;ReadPosRankSum=1.431;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:3,17:0.85:20
chr6	88226641	rs9450723	A	G	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr6	88251869	rs7773906	T	A	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	88255438	rs4707374	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	88258169	rs34513746	C	T	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	88273971	rs9450740	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr6	88274353	rs9450741	C	T	63.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr6	88300013	rs9450752	A	G	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr6	88303967	rs7750207	A	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	88315741	rs2307391	TA	T	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	88317292	rs10706424	CA	C	135.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	88317675	rs4706294	G	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	88331299	rs7772561	A	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.52;QD=25.25;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	88331334	rs34542681	TC	T	1086.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	88361017	rs7772351	G	A	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	88366602	rs1075665	A	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	88366771	rs2307379	A	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr6	88372984	rs76499304	G	A	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	88410715	rs35171686	C	T	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=3.810;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-0.079;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:192,78:0.29:270
chr6	88411485	.	C	T	1619.77	.	AC=1;AF=0.500;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr6	88757671	.	C	T	726.77	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:57,36:0.39:93
chr6	89323961	rs2236287	T	G	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.539;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:121,40:0.25:161
chr6	89388023	rs11753513	T	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr6	89559425	rs144959568	A	G	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr6	89790559	rs66688820	CTTCA	C	19332.73	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr6	89793894	rs1130809	G	C	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	89814711	rs9362618	T	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	89814772	rs35869140	CA	C	1259.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	89814830	rs7753709	A	G	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	89827604	.	C	T	5020.77	.	AC=1;AF=0.500;AN=2;DP=345;set=Intersection	GT:AD:AF:DP	0/1:115,229:0.67:344
chr6	89827716	rs77589760	C	G	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;MQ=60.14;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr6	89888744	rs1796743	C	T	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr6	89891582	rs404943	T	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	89907873	rs422751	G	A	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	89913108	rs4590241	C	G	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.399;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	89913112	rs4457139	G	A	8929.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=1.442;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr6	89913209	rs4590242	C	T	22532.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr6	89913218	rs4445034	T	A	22409.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr6	89913286	rs4386788	T	C	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr6	89914187	rs2183797	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	89914477	rs1556432	G	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	89926966	rs12200969	T	C	4397.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:99,197:0.67:296
chr6	89927155	rs34012805	CA	C	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr6	89967498	rs282129	G	A	3016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.678;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:86,142:0.62:228
chr6	89974063	rs723041	T	C	9562.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr6	89977322	rs58233945	C	CT	4947.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	89977629	.	A	G	1655.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr6	89977906	rs4707535	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	89981413	rs282117	T	C	13061.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr6	90024681	rs41273313	G	A	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr6	90039670	rs10502	G	C	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	90048113	rs74949641	T	C	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:51,75:0.60:126
chr6	90048376	.	GTT	G	598.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.03;ReadPosRankSum=-0.694;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr6	90048391	.	T	G	751.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=6.854;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.85;ReadPosRankSum=-0.358;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr6	90077647	rs200139969	A	AT	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.398;SOR=1.375;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr6	90087344	rs62415404	G	A	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,102:0.71:143
chr6	90315789	rs3748085	A	G	2846.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:54,127:0.70:181
chr6	90323624	rs1179906	T	C	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:128,72:0.36:200
chr6	90323663	rs72913908	G	A	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr6	90326471	rs11965767	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr6	90327873	rs6909915	G	A	1852.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr6	90333058	rs10944455	T	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:89,64:0.42:153
chr6	90333599	rs17292811	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	90334101	rs4487551	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	90340276	rs3210511	G	A	10128.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:227,460:0.67:687
chr6	90340446	rs61739327	C	T	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:263,144:0.35:407
chr6	90359625	.	TTTAGCCATATCATATTTAAAGCA	T	897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=17.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.972;SOR=3.209;set=HC	GT:AD:AF:DP	0/1:53,26:0.33:79
chr6	90360406	rs56396054	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr6	90360757	rs9359858	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	90361811	rs761729	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	90366329	rs202054662	CT	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.636;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr6	90368380	rs34732313	G	A	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:180,88:0.33:268
chr6	90371202	rs9444701	G	A	2652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=1.001;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:73,128:0.64:201
chr6	90371704	rs9294443	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	90371986	rs3818132	C	T	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr6	90372574	rs36040566	A	C	5093.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:466,277:0.37:743
chr6	90381849	rs7764076	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	90385754	rs9451261	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	90387233	rs6454769	C	T	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr6	90390233	rs72913976	T	C	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr6	90390443	rs9353689	C	A	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:106,186:0.64:292
chr6	90393483	rs41273329	G	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr6	90393766	rs117137445	A	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:37,62:0.63:99
chr6	90397132	rs34766278	G	C	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:272,154:0.36:426
chr6	90402840	rs9351212	C	A,G	4715.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=209;set=Intersection	GT:AF:DP	1/2:0.64,0.36:206
chr6	90405306	rs9294446	T	A	8943.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr6	90405993	rs9362672	C	G	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr6	90408589	rs3736984	A	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:140,55:0.28:195
chr6	90410590	rs183574980	C	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr6	90415764	rs7743484	A	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr6	90418262	rs2026634	C	T	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	90418331	rs55729223	A	G	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr6	90422627	rs2013736	G	C	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	90426270	rs9342205	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	90428968	rs6454774	G	A	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	90432565	rs34376900	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-1.825;QD=1.95;ReadPosRankSum=1.268;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr6	90432584	rs2016744	A	T	1185.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;MQRankSum=-0.115;QD=29.64;ReadPosRankSum=1.691;SOR=0.560;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr6	90432662	rs756363	C	T	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	90437541	rs141476254	AG	A	6451.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:118,161:0.58:279
chr6	90437546	rs112893069	C	T	6634.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:131,173:0.57:304
chr6	90437699	rs7767196	G	A	10209.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr6	90440728	.	G	A	511.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr6	90447924	rs72915946	C	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:82,48:0.37:130
chr6	90448092	rs4140446	C	T	11126.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr6	90452808	.	G	GA	728.73	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr6	90453256	rs3215598	G	GT	902.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr6	90453263	rs2273246	A	G	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr6	90453492	rs11358713	AC	A	12246.73	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr6	90455084	rs9359861	A	G	7428.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	90455429	rs9444704	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	90457322	rs138390895	A	AT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.758;QD=1.56;ReadPosRankSum=0.321;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr6	90459454	rs4053618	G	A	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:25,86:0.77:111
chr6	90463149	.	G	GA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.920;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr6	90468465	rs6937244	C	A	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:31,92:0.75:123
chr6	90482250	rs11961825	T	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr6	90486325	rs41402447	T	C	5581.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:123,252:0.67:375
chr6	90489773	rs72919916	G	A	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.114;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.332;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	90497814	rs4707570	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	90499502	rs1036853	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=-0.761;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr6	90529343	rs28372875	C	T	2042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=-0.594;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:221,116:0.34:337
chr6	90556397	.	C	CTTTT	1027.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=1.614;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:23,36:0.61:59
chr6	90565242	rs369328	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	90577602	rs60966143	C	T	6428.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:183,310:0.63:493
chr6	90577706	.	TG	T	3029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=420;ExcessHet=3.0103;FS=16.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.119;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:304,95:0.24:399
chr6	90577711	.	TCTTTGCCCAGACATGGA	T	2970.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.503;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=6.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=-0.545;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:336,95:0.22:431
chr6	90583290	rs11752307	T	C	119.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	90583396	rs9344967	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr6	90647759	rs182382	G	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:76,51:0.40:127
chr6	90661576	rs2236181	T	C	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:64,133:0.68:197
chr6	91228423	rs1145727	A	G	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	91278420	rs1145735	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	91281634	rs35467094	TA	T	490.25	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.447;QD=11.96;ReadPosRankSum=1.097;SOR=1.420;set=HC	GT:AD:AF:DP	1/1:5,36:0.88:41
chr6	91296420	rs282070	C	G	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	93956769	rs450238	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr6	93964319	rs345736	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr6	93967851	rs345730	C	T	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:231,109:0.32:340
chr6	93973686	rs901455	A	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr6	93982124	rs345713	A	G	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	94067981	rs164544	C	T	2626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=1.008;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:65,124:0.66:189
chr6	94120192	rs474809	G	A	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:39,71:0.65:110
chr6	94124530	rs540816	C	A	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr6	96034560	rs62417812	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:136,52:0.28:188
chr6	96034612	rs62417813	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:149,68:0.31:217
chr6	96034881	rs148967607	A	ATATG	2197.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:28,62:0.69:90
chr6	96650908	rs4307180	A	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr6	96651740	rs3811069	A	G	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	96974386	rs9320194	A	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	96999220	rs2475024	G	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr6	97000341	.	CT	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.231;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:132,38:0.22:170
chr6	97058574	rs2252816	G	A	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:117,211:0.64:328
chr6	97339078	rs6684	A	G	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	97339088	rs11402	C	T	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	97339275	rs34213186	C	CA	1146.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.897;MLEAC=2;MLEAF=1.000;MQ=60.60;MQRankSum=0.656;QD=17.92;ReadPosRankSum=0.259;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:5,59:0.92:64
chr6	97414949	rs35143662	C	T	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chr6	97630016	rs199987050	G	GT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.541;QD=1.03;ReadPosRankSum=-1.734;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:80,21:0.21:101
chr6	97677118	rs9481410	G	A	8410.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr6	97679540	rs34952523	GA	G	2193.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=-10.099;QD=21.09;ReadPosRankSum=1.741;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr6	97694582	rs113639235	A	ATAG	3428.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	97702313	rs67917473	AATTT	A	1074.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	98472564	rs9375085	G	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:71,44:0.38:115
chr6	99283376	rs195860	T	G	8346.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:173,360:0.68:533
chr6	99322354	rs3765239	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr6	99572765	rs114569756	A	G	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.81;ReadPosRankSum=-0.428;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr6	99572771	rs35787630	AT	A	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.710;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=6.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=-0.921;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr6	99771540	rs221527	T	C	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.755;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:206,75:0.27:281
chr6	99781218	rs11757364	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.275;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr6	99796886	rs2388906	T	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr6	99817419	rs11437017	T	TC	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:21,17:0.45:38
chr6	99817601	rs4144164	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	99819379	rs6925344	T	C	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-0.462;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:57,65:0.53:122
chr6	99825225	rs147407435	T	TC	8918.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:121,291:0.71:412
chr6	99831542	rs35446098	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr6	99841907	rs9389317	T	G	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr6	99842148	rs35863376	C	CTT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.834;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr6	99848256	rs1128347	A	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,43:0.69:62
chr6	99850350	rs67043839	GGTTA	G	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr6	99852267	rs11154824	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr6	99853849	rs11309252	CA	C	80.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr6	99853866	rs7744072	G	A	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	99860747	rs9321539	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr6	99883515	rs13208607	G	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr6	99883704	rs6570065	T	C	5888.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr6	99883842	rs7745005	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	99887911	rs141842420	C	CA	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	99891391	rs34401990	T	C	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr6	99891395	rs140108249	CTG	C	2044.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr6	99893878	rs12203426	T	C	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:56,118:0.68:174
chr6	99893938	rs4504482	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:224,99:0.31:323
chr6	99894360	rs66817403	CAAAGA	C	1031.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr6	99916182	rs10457650	G	A	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	99923899	rs11154875	G	T	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:27,56:0.67:83
chr6	99935975	rs2181687	G	A	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=0.569;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:109,53:0.33:162
chr6	99951750	rs6934692	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr6	99956560	rs7744845	T	C	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:191,113:0.37:304
chr6	99993188	rs330806	C	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr6	99999842	rs145717552	A	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=1.054;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:33,38:0.54:71
chr6	100006244	rs486881	T	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr6	100016240	rs330872	A	G	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.006;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.963;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr6	100060761	rs330843	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,9:0.30:30
chr6	100368759	rs4839764	G	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	100369284	rs13206575	T	C	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr6	100395802	rs74531963	A	G	1979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.22;ReadPosRankSum=-1.107;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:66,96:0.59:162
chr6	100403812	.	GA	G	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.788;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=2.094;QD=1.98;ReadPosRankSum=0.262;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:124,52:0.30:176
chr6	100895344	rs397662	C	T	7114.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	100895462	rs17060614	G	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr6	100896243	rs3213541	A	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr6	100896289	rs3830139	T	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr6	100896569	rs3734353	T	G	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr6	100901520	rs35003436	T	TG	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.732;QD=4.50;ReadPosRankSum=0.543;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr6	100911471	rs41315244	A	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:23,67:0.74:90
chr6	100957763	rs34448975	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-0.665;QD=1.55;ReadPosRankSum=0.306;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr6	100964147	rs240780	G	C	2691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=0.498;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:62,127:0.67:189
chr6	100988266	.	GA	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.879;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr6	101037718	rs1006398	T	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr6	101037737	rs185025774	T	A	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=10.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.67;ReadPosRankSum=-0.017;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr6	101053726	rs7452753	C	T	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr6	101054999	rs395521	C	T	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.217;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:83,35:0.30:118
chr6	101090377	rs239245	C	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr6	101094554	rs239239	A	G	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.652;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=3.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.897;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:215,77:0.26:292
chr6	101100528	rs239235	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:33,10:0.23:43
chr6	101100783	rs9399641	T	C	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:172,72:0.30:244
chr6	101163433	rs9403997	A	C	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.693;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.106;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr6	101166095	rs41288423	G	A	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:100,186:0.65:286
chr6	101215223	rs11345864	TA	T	3830.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr6	101215244	rs7746961	A	G	2449.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:53,107:0.67:160
chr6	101247503	rs3811078	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr6	101253788	rs4839792	A	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr6	101296389	rs9390698	G	A	983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.972;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:152,58:0.28:210
chr6	101312097	rs846791	C	T	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.84;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	101312104	rs705600	T	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	102133993	rs2852565	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,26:0.79:33
chr6	102134022	rs2786251	C	G	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr6	102337480	.	CT	C	273.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=4.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.343;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:67,32:0.32:99
chr6	102503258	.	G	T	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.963;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:185,64:0.26:249
chr6	102503317	rs2227283	G	A	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr6	105192107	rs72218235	TAAC	T	1898.73	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:93,54:0.37:147
chr6	105192363	rs148379395	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:55,23:0.29:78
chr6	105198124	rs55772282	T	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr6	105198267	rs7752614	A	G	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:168,80:0.32:248
chr6	105218982	rs7770269	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:63,37:0.37:100
chr6	105219773	rs7741145	T	C	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:147,109:0.43:256
chr6	105228483	rs2124434	C	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,40:0.77:52
chr6	105231930	rs35543340	A	C	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=2.057;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:40,9:0.18:49
chr6	105232204	rs2290515	C	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	105232233	rs9322817	A	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chr6	105232460	rs71763197	C	CA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=0.759;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr6	105239352	rs17065321	C	T	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:77,134:0.64:211
chr6	105244526	rs6918700	A	T	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr6	105259122	.	C	CATATAT	968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=15.88;ReadPosRankSum=-0.415;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:23,38:0.62:61
chr6	105259152	rs2168394	C	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	105300074	.	C	CTG,CTGTG	1789.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=84;set=Intersection	GT:AF:DP	1/2:0.59,0.29:80
chr6	105300105	.	C	CGT	920.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=2.195;SOR=0.777;set=HC	GT:AD:AF:DP	0/1:80,29:0.27:109
chr6	105300262	rs10635352	C	CAG	1624.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:96,48:0.33:144
chr6	105388405	rs7766336	T	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	105405220	rs61701350	T	TC	954.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	105406274	rs17065417	A	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr6	105548850	rs221657	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	105577172	rs9404603	A	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	105577224	rs9404604	A	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	105577401	rs4946656	C	T	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr6	105595261	rs1190274	G	A	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	105602108	rs1190280	T	G	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr6	105614712	rs1190292	T	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	105614743	rs67687316	TTG	T	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.99;SOR=3.160;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	105821449	rs9486069	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,60:0.67:90
chr6	105845906	rs6910880	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr6	105850846	rs115563721	C	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:25,37:0.60:62
chr6	106555025	rs1010273	G	A	17802.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr6	106899793	rs7763469	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	106959139	rs11752122	A	G	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr6	106959424	rs4946758	A	G	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:72,138:0.66:210
chr6	106959961	rs4946759	A	G	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr6	106959999	rs1340623	C	G	6279.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr6	106960039	rs4945755	G	A	5033.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:96,224:0.70:320
chr6	106960447	rs11152999	G	A	7776.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:201,363:0.64:564
chr6	106960957	rs1381552	C	T	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	106967778	rs3747787	T	C	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.461;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:316,137:0.30:453
chr6	106975415	rs2219666	A	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr6	106987161	rs783397	A	G	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	106987370	rs783396	A	C	9790.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr6	106989212	rs783392	G	A	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	106992464	rs1799693	A	G	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	106992592	rs2247335	A	T	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	106992844	rs2066201	C	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	106999658	rs1676010	A	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr6	107001456	rs1770731	A	T	3990.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:89,186:0.68:275
chr6	107001581	rs1770732	T	C	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr6	107003810	rs2066202	T	C	1831.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,85:0.70:122
chr6	107006336	rs9320179	G	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr6	107006347	rs4946763	T	C	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr6	107019880	rs9486410	A	G	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.914;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=4.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.470;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:103,41:0.28:144
chr6	107019994	rs9486411	G	T	1737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.537;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:215,104:0.33:319
chr6	107020088	rs9486412	A	G	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.22;ReadPosRankSum=-0.042;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:111,50:0.31:161
chr6	107020092	rs9486413	G	A	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=5.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.138;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:108,49:0.31:157
chr6	107050867	rs6568446	A	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	107069109	rs73761709	C	G	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	107069232	rs1870868	G	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr6	107069273	rs1870867	T	C	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr6	107069410	rs55832745	T	C	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:180,75:0.29:255
chr6	107076783	rs1987623	A	T	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr6	107088886	rs142129006	CTAAT	C	1375.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr6	107097123	rs34503502	AAC	A	1043.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr6	107100396	rs34221917	A	G	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:249,123:0.33:372
chr6	107113715	rs2015205	G	A	4357.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:115,198:0.63:313
chr6	107113963	rs9373889	C	T	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=27.62;ReadPosRankSum=-0.272;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:17,41:0.71:58
chr6	107113967	rs9400045	T	A	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=0.000;QD=29.37;ReadPosRankSum=-1.044;SOR=1.167;set=HC	GT:AD:AF:DP	0/1:15,39:0.72:54
chr6	107231881	rs376280113	GTC	G	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=1.324;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:125,23:0.16:148
chr6	107351195	.	G	GT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.939;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=16.241;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.277;SOR=2.803;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr6	107351457	rs1665924	G	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	107361476	rs311207	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	107365376	rs7767291	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	107365411	rs311249	G	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	107372242	rs3833659	GTTTTC	G	4043.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	107420387	rs36063846	G	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr6	107420516	rs4946811	A	C	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:194,100:0.34:294
chr6	107956095	rs9486659	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	108026317	rs1546962	G	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.533;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	108026402	rs1546961	A	C	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr6	108026455	rs1546960	A	G	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	108041801	rs11751218	G	T	799.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	108042213	rs846977	G	A	7000.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr6	108042334	rs846978	T	C	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	108068063	.	G	A	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DP=231;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.081;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:165,66:0.29:231
chr6	108093328	rs9480798	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	108093657	rs17528372	A	G	148.03	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr6	108193148	rs642954	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	108194241	rs579120	T	C	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	108197998	rs570558	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	108224422	rs2272886	A	C	8660.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr6	108224599	.	CA	C	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=3.049;QD=0.38;ReadPosRankSum=-0.545;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:361,85:0.19:446
chr6	108230346	rs617920	A	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	108233929	rs675117	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr6	108243115	rs142388422	T	TGGG	1766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-1.739;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:92,99:0.52:191
chr6	108243119	.	GAAAAAC	G	637.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.427;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=3.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=2.174;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:107,75:0.41:182
chr6	108243120	.	AAAAAC	A	984.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.508;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-1.115;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:98,82:0.46:180
chr6	108243123	.	AAC	A	1211	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=0.5000;HP=4;HapScore=1;MGOF=6;MMLQ=25;MQ=59.77;NF=8;NR=98;PP=1211;QD=11.6698113208;SC=CCTGGGGAAAAACAAAAAAAA;SbPval=0.5;Source=Platypus;TC=109;TCF=8;TCR=101;TR=106;WE=108243134;WS=108243105;set=Platypus	GT:AD:AF:DP	1/1:3,106:0.97:109
chr6	108243125	.	C	CGGGG	96.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=2.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.801;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:162,40:0.20:202
chr6	108277287	rs9486756	C	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	108279290	rs2272884	G	A	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	108487877	rs127501	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=-2.391;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr6	108489462	rs383319	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr6	108492570	rs35730621	ATC	A	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=-0.566;SOR=0.209;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr6	108495950	rs2233492	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	108498014	rs10563315	CTG	C	962.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=6.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-0.238;SOR=1.285;set=HC	GT:AD:AF:DP	0/1:117,35:0.23:152
chr6	108533548	.	AT	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=-0.198;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr6	108677003	rs2135941	G	A	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	108840870	rs2274776	A	G	895.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr6	109201129	rs17316116	A	C	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:89,143:0.62:232
chr6	109330758	rs148473451	CG	C	584.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	109560739	rs35237549	TA	T	359.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=1.037;QD=9.73;ReadPosRankSum=-0.491;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:7,30:0.81:37
chr6	109575596	rs6919557	C	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	109583186	rs1040285	A	G	3445.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	109615603	rs9487048	G	T	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:101,229:0.69:330
chr6	109616762	rs9400272	A	G	5112.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:108,232:0.68:340
chr6	109621494	rs6927569	T	C	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr6	109629420	rs11153168	A	T	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:15,51:0.77:66
chr6	109659589	rs57811946	TCACA	T,TCA	4282.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=33.72;ReadPosRankSum=-0.096;SOR=1.252;set=HC	GT:AD:AF:DP	1/2:8,83,36:0.65,0.28:127
chr6	109659610	rs186585486	C	G	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.293;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:89,58:0.39:147
chr6	109659612	rs80090825	C	G	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=-0.637;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:87,65:0.43:152
chr6	109659614	.	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.312;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:138,19:0.12:157
chr6	109665129	rs10457190	C	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	109673933	rs1040284	T	C	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr6	109674055	rs11153174	C	T	15463.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr6	109689431	rs974034	A	G	3079.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	109702646	rs3799840	A	T	5578.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	109703391	rs1885691	C	T	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	109703683	rs2275652	G	C	3268.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	109703727	rs1322816	C	A	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	109726262	rs34887926	G	GA	541	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr6	109752565	rs58424410	C	CA	729.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.148;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-0.447;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:11,50:0.82:61
chr6	109761437	rs4945831	A	G	15415.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr6	109762236	rs1048203	G	A	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	109764535	rs1476387	G	T	18568.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.978;set=HC	GT:AD:AF:DP	1/1:0,698:1.00:698
chr6	109767631	rs6149743	T	TGTGGTCTGGTCAGTGACCTGCCCAGG	5467.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr6	109767930	rs9320288	GC	TT	6033.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	109768295	rs910730	G	A	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	109769224	rs72092669	AACAG	A	1873.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	109769319	.	ACCGCCTTCTCCCTCTGT	A	1118	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=3;HapScore=1;MGOF=54;MMLQ=23;MQ=54.05;NF=16;NR=10;PP=1118;QD=43.2307692308;SC=ACACACACACACCGCCTTCTC;SbPval=0.56;Source=Platypus;TC=26;TCF=16;TCR=10;TR=26;WE=109769343;WS=109769309;set=Platypus	GT:AD:AF:DP	1/0:0,26:1.00:26
chr6	109769336	rs111385895	TCACACACA	T	1350.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	109770102	.	T	C	714.77	.	AC=1;AF=0.500;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	0/1:77,40:0.34:117
chr6	109770999	rs752262	G	C	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	109775436	rs2277113	T	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr6	109786980	rs3734652	T	C	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr6	109788801	rs2232446	G	A	5649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=0.433;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:157,266:0.63:423
chr6	109797304	rs2236084	A	G	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr6	109815351	rs7755941	T	C	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr6	109815440	rs7773950	A	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	109818529	.	TCA	T	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.94;ReadPosRankSum=-0.055;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:73,22:0.23:95
chr6	109818567	rs3932480	T	A	1039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.401;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:46,42:0.48:88
chr6	109818569	rs3932481	T	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=0.304;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:64,27:0.30:91
chr6	109818585	rs71018346	TCTCA	T	418.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.825;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:56,30:0.35:86
chr6	109818587	rs71809712	TCA	T	106.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.239;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr6	109818589	rs2024851	A	T	371.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.812;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr6	109827716	rs2277114	C	T	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr6	109830298	rs6912368	C	T	5752.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	109837859	rs10872035	T	C	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr6	109837879	rs7773915	A	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	109850199	rs72331392	AAC	A	505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.546;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr6	109863238	rs9386812	A	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	109871163	rs9400294	G	A	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	109885475	rs10499052	G	A	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr6	109886159	rs10872047	C	T	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	109906329	rs71770197	GCTT	G	831.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	109940498	rs10499053	A	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	109954065	.	CATAG	C	235.73	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	109954252	rs1406957	C	T	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	109962555	rs201487889	T	TC	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.595;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr6	109962904	rs7744981	A	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	109982160	rs2016207	C	T	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	109993291	rs12197838	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	110048489	rs11459279	C	CT	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:6,53:0.90:59
chr6	110053721	rs11153215	T	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	110053824	rs11377100	G	GT	937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.857;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.919;QD=12.34;ReadPosRankSum=1.955;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:16,60:0.79:76
chr6	110059510	rs2273752	C	A	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	110062873	rs1322124	T	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	110086098	rs146520572	T	TTTTTTGTTTTTG	2061.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=54.26;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	110106234	rs10499054	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	110110943	rs9384723	G	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	110113763	rs200535694	CT	C	2141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.812;QD=8.53;ReadPosRankSum=-0.657;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:97,154:0.61:251
chr6	110146303	rs1127771	G	A	2976.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:375,176:0.32:551
chr6	110567409	rs2334321	G	A	4006.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:88,176:0.67:264
chr6	110620177	rs41288584	T	C	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:124,77:0.38:201
chr6	110643956	rs6908306	T	C	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	110644112	rs112341783	A	AG	1411.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	110679062	rs4945854	T	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	110679413	rs62435951	A	G	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr6	110714584	rs2235989	A	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:73,27:0.27:100
chr6	110736610	rs9384742	T	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr6	110746351	rs17493602	T	C	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr6	110746526	rs7756222	T	C	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:93,138:0.60:231
chr6	110752289	rs1033572	G	A	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.132;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.300;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:56,100:0.64:156
chr6	110756960	rs221717	A	G	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr6	110763875	rs723685	A	G	6483.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:145,290:0.67:435
chr6	110777962	rs6907567	A	G	6123.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:149,275:0.65:424
chr6	110778128	rs714368	T	C	4285.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:83,202:0.71:285
chr6	110778323	rs717567	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	110797214	rs2428188	C	G	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	110797563	rs2494551	A	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	110797605	rs2494552	G	A	11805.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=1.637;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr6	110797612	rs6920997	A	G	12719.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr6	110797703	rs150666553	CCGCGGG	C	30975.73	.	AC=2;AF=1.00;AN=2;DB;DP=741;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr6	110797713	.	C	CCACCCCT	33870.73	.	AC=2;AF=1.00;AN=2;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr6	110797821	rs11153236	A	G	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr6	110797905	rs6922017	G	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	110942653	rs2272211	G	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	111213927	rs34637914	T	TC,TCC	495.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=27.54;SOR=0.914;set=HC	GT:AD:AF:DP	1/2:0,10,8:0.56,0.44:18
chr6	111499394	rs12213248	G	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr6	111527988	rs402940	G	A	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	111528041	rs12191266	T	C	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr6	111539961	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.041;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr6	111540372	rs405948	G	A	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr6	111543067	rs193282	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr6	111543513	rs118149501	G	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr6	111585121	rs139062302	C	T	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:267,119:0.31:386
chr6	111587266	rs11153279	T	C	6911.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:180,330:0.65:510
chr6	111628597	rs3204954	C	G	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:85,113:0.57:198
chr6	111628626	rs3204953	C	T	3308.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:118,154:0.57:272
chr6	111628999	rs113742829	AT	A	2299.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:25,65:0.72:90
chr6	111629001	.	T	C	2308.77	.	AC=1;AF=0.500;ALERT;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,65:0.72:90
chr6	111654680	rs5879102	CT	C	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=1.326;QD=4.67;ReadPosRankSum=-1.432;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr6	111665023	rs240990	G	A	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr6	111688927	rs3218587	G	A	7035.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:140,319:0.69:459
chr6	111695073	rs455645	C	T	4320.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:124,187:0.60:311
chr6	111695887	rs462779	G	A	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:54,111:0.67:165
chr6	111696129	rs3218591	T	A	4879.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:80,213:0.73:293
chr6	111696257	rs461646	G	A	2493.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:60,106:0.64:166
chr6	111711232	rs11376056	C	CG	1252.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr6	111793561	rs7772141	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	111880904	rs6912112	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.43;ReadPosRankSum=-0.718;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	111901453	rs1043730	G	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:143,70:0.33:213
chr6	111913262	rs33980500	C	T	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:209,114:0.35:323
chr6	111915564	rs174388	C	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,19:0.86:22
chr6	111918865	rs174393	G	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.70;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	111918865	.	GAAAA	AAAAA,AAAAG	402	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=7;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=35,18;NR=8,3;PP=377,402;QD=9.5760747104;SC=AAAATACAAAGAAAACCATTC;SbPval=0.52;Source=Platypus;TC=44;TCF=36;TCR=8;TR=43,21;WE=111918877;WS=111918855;set=Platypus	GT:AF:DP	0/1:0.98:44
chr6	111918869	rs11153302	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=0.498;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr6	111918999	rs174394	T	G	5547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.053;QD=20.25;ReadPosRankSum=-1.710;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:129,145:0.53:274
chr6	111919007	rs174395	G	A	5580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.446;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-1.057;QD=20.29;ReadPosRankSum=-1.129;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:129,146:0.53:275
chr6	111919108	rs6941014	T	C	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=7.426;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.382;QD=5.80;ReadPosRankSum=-1.231;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:82,44:0.35:126
chr6	112015570	rs3730352	G	A	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:293,128:0.30:421
chr6	112024262	rs3752545	A	C	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.682;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr6	112041359	rs706895	T	C	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	112421805	rs916429	T	C	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr6	112443134	rs4945897	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr6	112450351	rs2157550	G	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr6	112451367	rs34752945	G	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr6	112454185	rs764587	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.479;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=1.179;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:89,22:0.20:111
chr6	112454245	rs3734287	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.119;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.331;SOR=2.657;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr6	112457390	rs2032567	C	T	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:370,170:0.31:540
chr6	112457471	rs2032568	G	A	1907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-1.126;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:243,109:0.31:352
chr6	112493872	rs1050348	A	G	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.608;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:74,27:0.27:101
chr6	112506375	rs9374309	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:143,63:0.31:206
chr6	112506583	rs6908219	G	T	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	112508035	rs9400521	C	T	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr6	112508769	rs9387061	TG	GT	5174.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	112521183	rs2237242	G	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,49:0.60:82
chr6	112521387	rs4947176	A	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr6	112522852	rs11757455	G	A	567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.026;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:99,35:0.26:134
chr6	114178831	rs113531174	C	CGCT	4073.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:2,94:0.98:96
chr6	114262757	rs80092431	T	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr6	114267377	rs6908846	T	A	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.917;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=5.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=0.388;SOR=1.586;set=HC	GT:AD:AF:DP	0/1:34,47:0.58:81
chr6	114277625	rs2475631	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr6	114279783	rs2243356	A	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr6	114281236	rs75610070	C	T	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.688;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=1.475;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr6	114378970	rs2282237	C	T	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:347,171:0.33:518
chr6	116264354	rs550480	C	A	6233.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.64;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr6	116264386	rs11330350	AT	A	1397.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:13,87:0.87:100
chr6	116288597	rs9488815	A	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr6	116288912	rs11398565	T	TAA	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.47;ReadPosRankSum=0.658;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:4,38:0.90:42
chr6	116325142	rs3756772	C	T	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	116422281	rs36043015	C	G	1928.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:203,106:0.34:309
chr6	116427506	rs56295720	CT	C	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.910;QD=7.53;ReadPosRankSum=0.215;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr6	116429623	rs517352	T	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	116436944	rs62414122	A	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	116439220	rs515745	A	G	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	116441229	rs111661664	T	TGGG	3476.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	116560025	rs1204816	G	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	116575083	rs2232470	C	A	18731.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:1,695:1.00:696
chr6	116575116	rs17524614	G	T	12650.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:1,463:1.00:464
chr6	116575344	rs910391	T	G	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	116600465	rs78371471	T	TCAC	24095.73	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr6	116757557	rs560644	T	C	10595.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr6	116782488	rs2858833	T	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr6	116783390	rs10784	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	116836720	rs881863	G	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr6	116864570	rs4142087	A	C	5937.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	116875427	rs7762318	G	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	116878947	rs6906668	C	T	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr6	116901640	rs1321534	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	116982067	.	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=2.050;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr6	117010339	rs148103924	A	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:11,35:0.76:46
chr6	117045674	rs1150108	A	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	117073874	.	AATATAT	A,AAT	1618.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=73;set=Intersection	GT:AF:DP	1/2:0.33,0.68:40
chr6	117086265	rs641338	C	A	8699.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr6	117113653	rs615199	T	C	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	117114025	rs6901250	G	A	9754.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr6	117114223	rs6924002	T	A	11109.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr6	117114403	rs6901971	G	A	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	117121894	rs6917467	G	A	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	117130704	rs2274911	G	A	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:2,283:0.99:285
chr6	117237584	rs2184343	T	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	117240266	rs79696244	C	T	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr6	117246576	rs67292089	G	GA	4469.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr6	117587054	rs433425	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:90,50:0.36:140
chr6	117587074	rs439418	A	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr6	117678083	rs2243384	A	G	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr6	117681436	rs150963992	G	GAC,GACAC	2755.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;set=Intersection	GT:AF:DP	1/2:0.27,0.70:79
chr6	117718359	.	G	GT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.538;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr6	117725383	.	C	CA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.927;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:92,30:0.25:122
chr6	117861923	rs35230921	A	G	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:131,64:0.33:195
chr6	117864144	rs210619	A	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr6	117865928	rs9320608	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	117869491	rs210621	G	A	28536.77	.	AC=2;AF=1.00;AN=2;DB;DP=1074;set=Intersection	GT:AD:AF:DP	1/1:0,1071:1.00:1071
chr6	117996818	rs9767451	T	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	118475593	rs201593306	T	C	2450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=5.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-2.243;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:81,115:0.59:196
chr6	118475798	rs205966	G	A	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr6	118786486	rs3798420	T	C	3583.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:92,155:0.63:247
chr6	118801232	rs67283653	TCA	T	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr6	118803195	rs35791512	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.75;ReadPosRankSum=-0.209;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr6	118832320	rs9489424	T	C	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	118845168	rs12203844	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=-2.485;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr6	118886961	rs3734382	G	T	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:89,169:0.66:258
chr6	118887303	rs3734381	T	C	4520.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:145,212:0.59:357
chr6	118973953	rs9489486	A	G	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=2.126;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:21,60:0.74:81
chr6	118973998	rs1936059	G	T	152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.091;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr6	118974042	rs9489487	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr6	119149149	rs284921	C	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	119177480	rs36160966	T	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr6	119344020	rs9481880	C	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr6	119346010	rs1775613	T	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr6	119500916	rs3756943	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr6	119501601	rs35129454	T	TAA	3960.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:74,101:0.58:175
chr6	119501618	rs6569054	A	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr6	119501684	.	A	ATTTT	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=-0.381;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr6	119509785	rs2142887	C	G	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr6	119509870	rs2142888	G	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	119510739	rs2072888	C	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	119510777	rs2072889	T	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	119510941	rs2072890	C	A	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr6	119511105	.	AAATATGCCC	A	677.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,22:0.34:64
chr6	119522252	rs3822996	G	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	119522353	rs9481890	T	C	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	119522553	rs9481891	A	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	119611708	rs9489670	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	119611989	rs9489671	A	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	119623079	rs6917129	AT	GC	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	119623358	rs11153807	G	A	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	119623415	rs6918089	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	119627976	rs6915559	G	A	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	119628029	rs195092	C	T	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr6	119628198	rs6915947	G	A	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr6	119653186	rs7754482	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	119669706	rs148806304	G	A	5166.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:84,228:0.73:312
chr6	120336217	rs67803782	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	120336269	rs66780530	G	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	120336327	rs68035463	C	A	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr6	120336384	rs67106263	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr6	121412191	.	T	TA	390.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr6	121436420	rs7772283	C	T	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=0.000;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:14,38:0.73:52
chr6	121436420	.	CAG	TAT	360	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=24;MQ=60.0;NF=11;NR=18;PP=360;QD=14.2575129263;SC=TTATAAAGTGCAGAAAAGTTT;SbPval=0.54;Source=Platypus;TC=43;TCF=16;TCR=27;TR=29;WE=121436430;WS=121436410;set=Platypus	GT:AD:AF:DP	0/1:14,29:0.67:43
chr6	121436422	rs7772508	G	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.58;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	121451095	rs1273728	C	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-0.994;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,34:0.74:46
chr6	121491472	rs1273749	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	121526447	rs9320795	G	C	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr6	121526459	rs35328788	G	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.80;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	121526465	rs35549991	G	T	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.99;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	121560155	rs12191616	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,19:0.29:65
chr6	121576666	rs10650607	T	TTTATAA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.84;ReadPosRankSum=-0.545;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr6	121577370	rs7745023	T	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:85,43:0.34:128
chr6	121615826	rs6941332	T	C	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=1.779;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:22,60:0.73:82
chr6	121620608	rs9387944	G	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	121620804	rs17083393	T	C	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr6	121625832	rs10499105	T	C	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.878;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr6	121632008	rs9372653	T	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	122720806	rs6926219	G	A	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:50,139:0.74:189
chr6	122720813	.	T	TGCCGTAGCTGCC	1837.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DP=200;ExcessHet=3.0103;FS=3.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=2.769;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:146,45:0.24:191
chr6	122737326	rs150012876	AT	A	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=1.014;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:65,48:0.42:113
chr6	122740474	rs3734595	G	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr6	122743502	rs487487	T	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	122749156	rs45503393	G	GTC	1572.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:84,44:0.34:128
chr6	122752550	rs149578348	T	TTA	164.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr6	122768231	rs2277107	T	C	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:169,90:0.35:259
chr6	122772692	rs510283	T	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.15;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	122775195	rs499825	A	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	122792765	rs3752573	G	C	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-0.596;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:60,35:0.37:95
chr6	122792768	rs3752574	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=0.412;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:63,35:0.36:98
chr6	122793033	rs1267941	A	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	122793073	rs3752576	C	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,15:0.32:47
chr6	123022496	rs4382328	A	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,88:0.62:142
chr6	123038887	rs6920792	CT	GC	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	123101348	rs2171068	G	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	123101647	rs2243372	A	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,29:0.45:64
chr6	123110451	rs117614515	G	C	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:63,158:0.71:221
chr6	123122385	rs9372718	A	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:101,56:0.36:157
chr6	123369910	rs6900862	T	C	5680.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr6	123539609	rs361509	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr6	123539684	rs361508	CT	TC	2409.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;JOINED;set=Intersection	GT:AD:AF:DP	0/1:83,64:0.44:147
chr6	123539904	rs7754205	C	T	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr6	123545159	rs11368178	GA	G	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.099;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr6	123580675	rs9375235	C	T	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	123586300	rs9375238	C	A	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	123591138	rs1367676	T	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	123592184	rs113318627	C	CTGTG,CTG	591.74	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	0/1:0.89:18
chr6	123594510	rs147062785	T	TA	1215.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	123595869	rs2873478	A	C	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	123653242	rs189554196	T	C	149.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.68;ReadPosRankSum=1.150;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr6	123658825	rs9401658	G	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr6	123687288	rs2873479	A	C	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	123687432	rs7769808	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	123702499	rs3813328	G	A	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	123703101	rs143581898	GCT	GCTCT,G	369.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	0/1:0.71:21
chr6	123758492	rs9320936	C	T	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=0.658;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr6	123819847	rs9320940	T	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	123833457	rs6902416	G	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr6	123851538	rs12196787	G	C	57.10	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	123851590	rs12198164	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr6	123851610	rs12198167	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr6	123851865	rs4897276	A	T	86.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.48;ReadPosRankSum=0.210;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr6	123869607	rs9490809	G	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:104,59:0.36:163
chr6	123869769	rs66509682	TAA	T	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-1.712;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:88,51:0.37:139
chr6	123892001	rs2145735	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr6	123892337	rs2295732	G	A	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr6	124603337	rs72980476	C	T	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=0.985;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:161,45:0.22:206
chr6	124603378	rs1916790	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.906;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:96,29:0.23:125
chr6	124603390	rs802497	A	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.666;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr6	124604055	rs41284440	G	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:81,48:0.37:129
chr6	124676685	rs144139894	TC	T	233.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	124759018	.	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=4.058;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=1.14;ReadPosRankSum=2.223;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr6	124811558	rs3052658	G	GTT,GTTT	1274.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=23.18;ReadPosRankSum=0.033;SOR=0.927;set=HC	GT:AD:AF:DP	1/2:3,24,28:0.44,0.51:55
chr6	124979689	rs1479039	T	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	125139473	rs1923726	TG	GC	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr6	125144352	rs2025251	T	G	11800.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:1,454:1.00:455
chr6	125229538	rs781733	T	C	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:157,88:0.36:245
chr6	125229856	rs781734	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr6	125230075	rs781735	A	C	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	125230575	rs1577203	G	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:81,33:0.29:114
chr6	125230965	rs1761559	A	G	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.364;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr6	125231246	rs1750578	T	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr6	125232072	rs699387	T	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:48,24:0.33:72
chr6	125232368	rs781740	G	T	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=-3.985;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:96,21:0.18:117
chr6	125232594	rs781741	C	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr6	125232766	rs11385725	C	CA	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.650;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:65,31:0.32:96
chr6	125232853	rs6569400	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.267;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.460;SOR=1.216;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr6	125233518	rs781742	A	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:116,60:0.34:176
chr6	125252731	rs4896596	C	T	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr6	125284457	rs9401790	T	C	9703.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:209,442:0.68:651
chr6	125330619	rs112538609	GA	G	281.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr6	125366289	rs34249175	CA	C	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.765;QD=4.31;ReadPosRankSum=-0.351;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:98,57:0.37:155
chr6	125379202	rs142610684	A	G	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:107,191:0.64:298
chr6	125402711	rs492800	C	T	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	125475139	rs2277111	G	A	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:334,213:0.39:547
chr6	125569405	rs2273562	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr6	125573194	rs3799734	A	G	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:160,93:0.37:253
chr6	125597247	rs113530993	GA	G	642.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:93,42:0.31:135
chr6	125597433	rs113374738	AAG	A	1137.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr6	125598199	rs2243392	TG	CA	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr6	125614100	rs1417701	C	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr6	125614121	rs1417700	C	A	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:67,35:0.34:102
chr6	125620878	rs987168	T	C	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:224,119:0.35:343
chr6	125621618	rs2243390	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:65,30:0.32:95
chr6	125621645	rs2243389	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:93,39:0.30:132
chr6	125621920	rs9491377	C	T	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr6	125623185	rs73581683	A	T	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:148,86:0.37:234
chr6	125623247	rs73581685	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=0.083;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:29,23:0.44:52
chr6	125623268	.	C	CTCCTCT	685.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=6.345;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=0.000;QD=18.05;ReadPosRankSum=-1.515;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr6	125623289	rs145065587	C	CTCCTCT	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-0.150;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr6	126242004	rs4563736	CG	GC	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	126249755	.	CT	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.850;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:68,29:0.30:97
chr6	126288023	rs3757212	T	C	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:62,117:0.65:179
chr6	126307962	rs6569448	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	126319881	rs6569449	T	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr6	126334041	rs2206941	G	A	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:55,84:0.60:139
chr6	127471791	rs3734626	C	T	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:51,89:0.64:140
chr6	127476516	rs1892172	G	A	4565.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:118,214:0.64:332
chr6	127640190	rs9285460	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr6	127768762	rs6902288	G	A	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	127768950	rs2236027	A	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	127770923	rs3818135	A	C	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.59;SOR=2.197;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	127771452	rs3734447	T	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	127794289	rs41285272	T	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	127796326	rs12194762	G	C	1408.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	128030957	rs490008	G	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr6	128040839	rs675531	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:246,98:0.28:344
chr6	128176383	rs270032	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr6	128291199	rs3190930	C	T	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr6	128297986	rs4321844	G	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	128307118	rs4341027	T	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	128321318	rs36043888	C	CT	137.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	128324241	rs717851	T	C	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr6	128330249	rs9321104	T	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	128385998	rs4897241	A	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr6	128388799	rs35030557	G	T	5466.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:102,249:0.71:351
chr6	128388990	rs4897242	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,67:0.61:109
chr6	128389074	rs4897243	T	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr6	128403745	rs17828130	A	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	128812869	rs76361302	CTT	C	8623.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	128813085	rs17460940	C	T	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	128841382	rs11752256	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr6	128841648	rs62426793	C	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr6	129381026	rs4404787	C	A	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	129573438	.	C	T	1049.77	.	AC=1;AF=0.500;AN=2;DP=171;set=Intersection	GT:AD:AF:DP	0/1:111,58:0.34:169
chr6	129612624	rs1015846	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	129649350	rs55748488	C	T	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:28,54:0.66:82
chr6	129722389	rs3749877	A	G	6645.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:211,306:0.59:517
chr6	129722425	rs3749878	G	A	7567.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:221,353:0.61:574
chr6	129724894	rs2326817	A	G	3836.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:100,187:0.65:287
chr6	129724942	rs3828735	T	A	13358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.43;ReadPosRankSum=0.742;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:158,329:0.68:487
chr6	129724944	rs80125253	CT	TG	13374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.187;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.41;ReadPosRankSum=0.987;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:158,330:0.68:488
chr6	129762112	rs2297738	G	A	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-1.557;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:172,81:0.32:253
chr6	129763197	rs7738519	C	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	129775470	rs2297742	T	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:92,46:0.33:138
chr6	129777382	rs1811970	C	T	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr6	129785391	rs1414736	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	129796620	rs7741996	C	T	3290.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:96,155:0.62:251
chr6	129799682	rs2784895	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr6	129802302	rs2275214	G	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr6	129802716	rs2571581	A	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr6	129807483	rs6569604	C	G	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr6	129807629	rs2229848	C	T	3446.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:63,153:0.71:216
chr6	129807699	rs2229849	G	C	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:67,148:0.69:215
chr6	129807714	rs2229850	G	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:136,70:0.34:206
chr6	129807869	rs6938825	C	A	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr6	129813346	rs1889891	C	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	129823645	rs7754167	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr6	129837610	rs1049476	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr6	129905035	.	CA	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.677;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr6	129920298	rs145578474	AAATTTTGGTATTAAAAAAATACT	A	949.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	129927014	rs3813366	A	G	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr6	129929209	.	G	GAAA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-1.085;QD=9.57;ReadPosRankSum=-1.113;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr6	129932648	rs34046462	A	C	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr6	129932894	rs7753754	T	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	129937456	rs12524078	A	G	5396.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr6	129950394	rs4295498	A	C	997.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.058;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.63;ReadPosRankSum=0.269;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr6	129950396	rs71543162	A	C	997.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.756;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.058;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=35.63;ReadPosRankSum=0.337;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr6	129955117	rs9375645	A	C	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=26.25;SOR=1.963;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	129955151	rs113829468	G	GA	1439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.111;QD=13.71;ReadPosRankSum=0.899;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr6	129955171	rs13218300	A	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=2.807;QD=4.96;ReadPosRankSum=0.642;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:94,49:0.34:143
chr6	129955327	rs12664247	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:69,44:0.39:113
chr6	129959721	rs150003221	C	T	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.643;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:239,87:0.27:326
chr6	130031215	rs3752536	T	C	1659.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,76:0.60:127
chr6	130152440	rs9372948	C	T	1715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.08;ReadPosRankSum=-1.318;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:16,43:0.73:59
chr6	130152452	rs9375666	G	A	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr6	130152479	rs7758540	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.323;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:72,25:0.26:97
chr6	130152520	rs7776426	A	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:86,29:0.25:115
chr6	130154667	rs9492393	T	C	5959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=1.023;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:130,274:0.68:404
chr6	130154686	rs4629709	A	G	9553.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr6	130164764	rs9321190	G	A	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	130164856	rs9402185	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	130166871	rs17475221	G	T	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=6.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-0.828;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:36,85:0.70:121
chr6	130166908	rs17396809	T	G	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:58,141:0.71:199
chr6	130167131	rs12189832	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	130370404	rs75575024	C	CCT	6226.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr6	130370731	rs142539365	TTG	T	3928.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	130371055	rs3890746	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr6	130374102	rs9388768	C	A	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr6	130376221	rs13204752	G	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr6	130378833	rs12661188	T	C	158.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	130381074	rs34552886	G	A	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr6	130381246	rs7451021	T	C	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr6	130387431	rs148263906	G	GTATATATATATATA	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=28.88;ReadPosRankSum=-1.981;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr6	130387773	rs9402214	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	130466413	rs4897369	G	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	130466676	rs4897370	A	G	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.67;ReadPosRankSum=1.294;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	130483222	rs9321214	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	130496883	rs13196169	G	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr6	130504481	rs370056383	CA	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.048;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr6	130504496	rs66496448	GA	G	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.254;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.000;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr6	130505374	rs41285310	A	C	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr6	130530815	rs1932100	C	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	130535420	rs4897377	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.799;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr6	130536494	rs34071457	AT	A	1876.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr6	130761798	rs3813360	T	C	4616.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:93,201:0.68:294
chr6	130761804	rs12200105	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:209,93:0.31:302
chr6	130762287	rs17053432	G	T	4878.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:104,210:0.67:314
chr6	131211616	.	GAA	G	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=3.419;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.583;QD=4.23;ReadPosRankSum=-0.687;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr6	131481394	rs67922791	CA	C	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	131490472	rs1408027	T	C	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	131900144	rs56325116	GC	AT	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1,11:0.92:12
chr6	131900390	rs34504481	C	T	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=-0.505;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:101,39:0.28:140
chr6	131903954	rs142782396	G	GAC	1895.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr6	131904704	rs60712846	G	GA	1119.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr6	131904719	rs17599586	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr6	131914232	rs77187818	A	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:87,34:0.28:121
chr6	131926259	rs59558743	CT	C	187.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr6	131941944	.	A	AT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.185;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr6	131948469	rs60163644	GA	G	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.842;QD=1.30;ReadPosRankSum=-0.467;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:115,43:0.27:158
chr6	131948816	rs200823095	TA	T	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.773;QD=1.19;ReadPosRankSum=0.859;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:172,58:0.25:230
chr6	131958485	rs9375819	A	C	5039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-1.489;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:96,239:0.71:335
chr6	132043349	rs378697	A	T	5495.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr6	132061420	rs17601580	G	A	4260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=-0.565;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:115,205:0.64:320
chr6	132061605	rs67914728	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr6	132113403	rs9493099	T	C	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:112,208:0.65:320
chr6	132168996	rs67733446	GGT	G	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr6	132189067	rs71804740	CT	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-0.777;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:79,33:0.29:112
chr6	132270728	rs59140114	GA	G	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.083;QD=6.11;ReadPosRankSum=0.899;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:12,12:0.50:24
chr6	132271952	rs7451102	G	C	8049.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr6	132271959	rs12206231	T	G	8024.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	132271980	rs6934749	T	G	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr6	132436285	rs74796328	G	A	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr6	132785098	rs142051551	T	A	1728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.21;ReadPosRankSum=0.446;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:228,104:0.31:332
chr6	132789363	rs3765577	A	G	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr6	132824833	rs2842885	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.238;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	132859609	rs2842899	T	A	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr6	132860522	rs2842898	C	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	132910612	rs3813355	G	A	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:2,361:0.99:363
chr6	132929904	rs3813352	C	T	17470.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=0.698;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr6	132929911	rs3813351	A	G	17810.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr6	132930158	rs35751778	T	C	12621.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr6	132930277	rs35927289	G	A	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	132966279	rs8192620	T	C	3870.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:83,170:0.67:253
chr6	133015188	rs199565249	G	C	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:71,134:0.65:205
chr6	133015271	rs2272996	T	C	4027.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:92,186:0.67:278
chr6	133048213	rs9493417	G	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr6	133052616	rs4895943	C	T	1171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=2.713;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:268,87:0.25:355
chr6	133055610	rs764262	G	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:238,150:0.39:388
chr6	133055876	rs45548039	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr6	133070995	rs4895944	G	T	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr6	133074663	rs9493426	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=1.359;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:92,46:0.33:138
chr6	133076896	rs9483499	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr6	133079136	.	A	T	156	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=5;HapScore=2;MGOF=34;MMLQ=28;MQ=60.56;NF=3;NR=7;PP=156;QD=19.0771212547;SC=CTTTATCATCATTTTTCTTCT;SbPval=0.24;Source=Platypus;TC=41;TCF=7;TCR=34;TR=10;WE=133079144;WS=133079126;set=Platypus	GT:AD:AF:DP	0/1:31,10:0.24:41
chr6	133079139	.	T	TTTCTTCTTC	43.27	.	AC=1;AF=0.500;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.07;QD=21.64;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:0,2:1.00:2
chr6	133093231	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=0.65;ReadPosRankSum=2.001;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr6	133135807	rs9493450	C	T	3555.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:63,158:0.71:221
chr6	133135864	rs12202302	T	G	5691.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:129,260:0.67:389
chr6	133135886	rs9483504	A	G	5909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-1.290;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:133,270:0.67:403
chr6	133136041	rs9493451	C	G	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,41:0.59:69
chr6	133137111	rs3778174	C	T	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:9,42:0.82:51
chr6	133138010	rs9389034	T	C	4665.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:107,209:0.66:316
chr6	133138067	rs34924584	ATT	A	1486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.122;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=15.49;ReadPosRankSum=1.354;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:32,64:0.67:96
chr6	133138600	rs117573035	G	A	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=-2.135;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr6	133827148	rs6929656	T	C	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	134305494	rs2273097	A	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr6	134327815	rs2811676	C	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,29:0.74:39
chr6	134494548	rs1743965	C	T	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr6	134495291	rs3215438	T	TC	304.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr6	134536272	.	C	CTTTCTT,CTTTCTTT	956.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.511;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.707;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.33;MQRankSum=0.935;QD=25.86;ReadPosRankSum=1.122;SOR=0.191;set=HC	GT:AD:AF:DP	1/2:3,20,14:0.54,0.38:37
chr6	134536309	rs4896026	G	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	135260303	rs7754722	T	C	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr6	135286438	rs35078158	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.540;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chr6	135511108	rs210796	A	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr6	135511587	rs1022506	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	135514829	rs34931156	TA	T	691.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=1.544;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.242;QD=4.74;ReadPosRankSum=-0.615;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr6	135515448	rs11154794	T	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr6	135517996	rs12660713	G	A	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr6	135522755	rs3752383	A	G	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=5.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=2.414;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:39,113:0.74:152
chr6	135522939	rs743589	T	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr6	135523786	rs41294868	G	A	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-0.844;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr6	135524516	rs9385719	A	G	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.065;QD=5.26;ReadPosRankSum=1.757;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:346,163:0.32:509
chr6	135524520	rs113909655	T	TTGG	5087.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.841;QD=11.59;ReadPosRankSum=1.214;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:293,146:0.33:439
chr6	135524553	rs9402696	C	T	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.006;QD=5.75;ReadPosRankSum=-0.012;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:292,146:0.33:438
chr6	135623833	rs2207000	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr6	135748200	rs2757639	A	G	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	135752608	rs2614270	T	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	135754471	rs737561	C	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	135763585	rs2614274	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	135763866	rs2757645	G	A	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	135813251	rs9402709	G	T	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	135818897	rs13197384	C	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	136268769	rs41288029	A	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,64:0.75:85
chr6	136472185	rs35539959	G	GA	329.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr6	136472439	rs4896201	G	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:94,39:0.29:133
chr6	136472496	rs4896202	T	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr6	136582113	.	A	C	107	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=3;HapScore=2;MGOF=79;MMLQ=28;MQ=51.5;NF=1;NR=1;PP=107;QD=70.8856062736;SC=TGAAGACTTAAAACAAAATTT;SbPval=0.3;Source=Platypus;TC=6;TCF=5;TCR=1;TR=2;WE=136582121;WS=136582103;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr6	136582417	rs62431283	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:96,30:0.24:126
chr6	136582497	rs62431284	G	T	4948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.234;ClippingRankSum=0.000;DB;DP=605;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-9.786;QD=8.49;ReadPosRankSum=0.101;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:329,254:0.44:583
chr6	136589448	rs78267720	C	A	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=15.037;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-4.639;QD=0.82;ReadPosRankSum=-2.202;SOR=3.051;set=HC	GT:AD:AF:DP	0/1:60,9:0.13:69
chr6	136590613	rs62431285	T	C	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.117;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.068;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-5.785;QD=4.99;ReadPosRankSum=-3.402;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:162,77:0.32:239
chr6	136590640	rs62431286	A	C	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.796;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-6.887;QD=4.88;ReadPosRankSum=0.421;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:232,109:0.32:341
chr6	136590698	rs62431287	C	T	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.432;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-8.819;QD=3.16;ReadPosRankSum=0.167;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:332,108:0.25:440
chr6	136590712	rs62431288	C	T	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-7.801;QD=2.42;ReadPosRankSum=-0.782;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:338,92:0.21:430
chr6	136595439	rs5880289	T	TA	84.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.42;ReadPosRankSum=1.164;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr6	136597004	rs7762367	A	G	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.237;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-6.806;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:201,38:0.16:239
chr6	136597262	rs1967444	T	C	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:284,247:0.47:531
chr6	136597281	rs1967445	A	T	9762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=5.922;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.467;QD=17.78;ReadPosRankSum=1.829;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:292,257:0.47:549
chr6	136597288	rs1967446	A	C	9773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=5.007;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.594;QD=17.45;ReadPosRankSum=2.144;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:297,263:0.47:560
chr6	136598895	rs58951987	T	TA	271.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	136599393	rs6940018	G	C	6933.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:493,345:0.41:838
chr6	136599404	rs6919254	T	C	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=812;set=Intersection	GT:AD:AF:DP	0/1:481,328:0.41:809
chr6	136599822	rs9942517	C	G	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-4.168;QD=7.97;ReadPosRankSum=2.908;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:92,68:0.42:160
chr6	136599836	rs9942518	G	A	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.516;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-4.409;QD=14.37;ReadPosRankSum=3.395;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:105,69:0.40:174
chr6	136599842	rs9942519	G	A	2494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-4.135;QD=14.17;ReadPosRankSum=3.480;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:109,67:0.38:176
chr6	136599910	.	T	TGTATCGCTTCTTTCTAGAATGAGATCTTGATCTTGATCG	745.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.741;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=20.836;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-3.960;QD=6.84;ReadPosRankSum=-6.410;SOR=2.854;set=HC	GT:AD:AF:DP	0/1:82,27:0.25:109
chr6	136682172	rs2076190	G	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	136698697	rs2076192	C	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	136710669	rs58458173	TA	T	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.747;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-1.270;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:108,62:0.36:170
chr6	136847116	rs5880298	GT	G	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.018;QD=1.97;ReadPosRankSum=0.689;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr6	136915022	.	G	C	146.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	136932603	.	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.986;QD=0.39;ReadPosRankSum=1.552;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr6	136977568	rs2076260	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:45,83:0.65:128
chr6	136990283	rs3765259	T	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr6	137026266	rs9321567	T	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr6	137041833	rs1321477	C	T	4262.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:93,187:0.67:280
chr6	137113137	rs55666429	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:98,42:0.30:140
chr6	137143709	rs1321471	T	C	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=1.147;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr6	137143980	rs11283064	G	GGGGGCC	730.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr6	137147715	rs78990055	C	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	137166650	rs2295592	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr6	137166682	rs927181	G	A	2706.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	137167445	rs9321575	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.795;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:68,25:0.27:93
chr6	137187641	rs1884940	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:45,14:0.24:59
chr6	137191970	rs34118640	G	A	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.93;ReadPosRankSum=0.970;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr6	137323213	rs1342642	G	A	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:121,166:0.58:287
chr6	137325847	rs1555498	C	T	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=26.30;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr6	137325901	.	TAA	T,TA	1162.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=3.847;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQRankSum=0.668;QD=14.53;ReadPosRankSum=0.231;SOR=0.228;set=HC	GT:AD:AF:DP	1/2:7,20,53:0.25,0.66:80
chr6	137338276	rs433243	A	G	6604.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr6	137338352	rs451371	G	T	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=1.633;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	137338357	rs442663	A	G	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr6	137338423	.	T	C	90.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr6	137519588	rs11914	A	C	2465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=3.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=1.992;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:255,144:0.36:399
chr6	137524870	.	GAA	G	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.000;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:88,23:0.21:111
chr6	137536455	rs1327475	G	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=1.440;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:54,22:0.29:76
chr6	137540370	rs7749390	A	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:137,50:0.27:187
chr6	137540520	rs2234711	A	G	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.559;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:126,49:0.28:175
chr6	137814666	rs146880588	C	A	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,52:0.64:81
chr6	138195961	rs71670547	TCTC	T	829.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=1.303;QD=25.14;ReadPosRankSum=-0.594;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	138197331	rs661561	A	C	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:70,135:0.66:205
chr6	138413269	rs648396	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:108,57:0.35:165
chr6	138413333	rs648802	G	C	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.610;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:238,129:0.35:367
chr6	138417415	rs2484067	T	C	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	138601391	rs72986886	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.720;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=0.161;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:42,12:0.22:54
chr6	138734312	rs13778	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	138751629	rs61747081	G	C	4888.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:145,220:0.60:365
chr6	138753337	rs2039121	C	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	138754323	rs2327891	A	G	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr6	138820287	.	CACACACACAG	C	145.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.103;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:45,11:0.20:56
chr6	138820289	rs57483336	CACACACAG	C	1037.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.907;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=1.186;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:15,38:0.72:53
chr6	138820324	rs10457670	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	139013188	rs58674844	C	T	7734.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:205,345:0.63:550
chr6	139017780	rs4348337	G	A	5823.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:108,263:0.71:371
chr6	139017815	rs9399249	A	G	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:76,186:0.71:262
chr6	139017873	rs5880395	G	GT	2589.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:32,74:0.70:106
chr6	139085450	rs4243458	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr6	139094629	rs111500978	C	CG	4668.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.45;ReadPosRankSum=0.902;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:22,186:0.89:208
chr6	139094638	rs59299306	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.896;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=15.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-1.871;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:181,54:0.23:235
chr6	139097174	rs1040773	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr6	139106599	rs3763185	A	C	5393.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:161,251:0.61:412
chr6	139106722	rs3763186	C	A	5042.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:88,233:0.73:321
chr6	139106787	rs3763187	G	A	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr6	139113869	rs139961983	T	TTAAC	914.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr6	139114113	rs6570282	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	139183879	rs12204850	G	A	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:105,177:0.63:282
chr6	139184044	rs1188827	C	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	139186457	rs12198757	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr6	139197609	rs1529151	G	A	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.514;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:129,54:0.30:183
chr6	139202014	rs1157050	G	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	139207910	rs1188831	C	T	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr6	139229695	rs1188867	A	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr6	139229743	rs1188868	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	139265882	rs1188897	T	A	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr6	139456761	rs185694700	T	C	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	139487394	rs7768941	T	C	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr6	139487836	rs3173082	T	C	14699.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr6	139563914	rs9495391	C	G	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:159,95:0.37:254
chr6	139598061	rs66961117	TA	T	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.384;QD=4.07;ReadPosRankSum=-1.270;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr6	139610124	rs55712380	G	T	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	141004964	rs5880480	G	GT	4039.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr6	141005059	rs4535568	G	A	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=25.23;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	142384062	rs6906577	A	G	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	142384082	rs6907175	G	A	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.03;QD=29.74;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	142491463	rs11446143	C	CG	1643.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	142691950	rs71643377	CT	C	445.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.837;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.813;QD=3.12;ReadPosRankSum=-0.431;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:90,53:0.37:143
chr6	142718801	rs989946	G	A	10664.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr6	142758631	rs1262686	A	G	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr6	143074700	rs169098	T	C	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	143081847	rs197462	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	143090803	rs34296594	C	T	5510.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:118,241:0.67:359
chr6	143091263	rs109836	A	G	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	143382254	rs138059311	CGT	C	865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.662;QD=5.28;ReadPosRankSum=0.882;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:115,49:0.30:164
chr6	143605472	rs9403480	G	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr6	143654625	rs2303386	C	T	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr6	143754938	rs3761999	G	A	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr6	143765993	rs200456994	CT	C	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	143772311	rs2272924	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr6	143784031	rs3830767	AT	A	5095.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,228:1.00:229
chr6	143789181	rs161068	A	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	143792078	rs3762000	C	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.325;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:81,26:0.24:107
chr6	143792675	rs22908	T	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,59:0.69:85
chr6	143806276	rs161058	A	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr6	143816859	rs8161	C	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr6	143823112	rs3762001	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:204,90:0.31:294
chr6	143823157	rs3762002	T	C	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=1.507;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:251,91:0.27:342
chr6	143823758	rs3789788	AG	CA	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr6	143824972	rs9390096	A	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.219;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr6	143828325	rs1569589	T	C	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.187;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:98,60:0.38:158
chr6	143929450	rs41285023	G	A	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:76,159:0.68:235
chr6	144032317	rs2488101	A	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	144032822	rs2488102	A	T	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr6	144069984	rs33958582	GT	G	234.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	144081609	rs2073214	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:163,87:0.35:250
chr6	144086394	rs9496767	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr6	144104142	rs5880573	A	ATGTGTGTG	87.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.93;MQRankSum=0.431;QD=14.62;ReadPosRankSum=1.111;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	144104469	rs1012753	A	T	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.84;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	144128398	rs9376790	A	C	298.79	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr6	144144599	rs11966700	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr6	144144678	rs78321126	T	C	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr6	144144875	rs41285027	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:40,94:0.70:134
chr6	144165809	rs35521359	CT	C	646.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=5.285;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=2.477;QD=5.39;ReadPosRankSum=0.924;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:62,58:0.48:120
chr6	144178419	rs3818089	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr6	144803547	.	GTTA	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.105;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:29,5:0.15:34
chr6	144814625	rs368319861	GTC	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.390;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.097;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:55,10:0.15:65
chr6	144835040	rs66905872	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.075;SOR=0.938;set=HC	GT:AD:AF:DP	0/1:77,25:0.25:102
chr6	144843072	.	GAT	G	49	.	AC=1;AF=0.500;AN=2;BRF=0.06;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=20;MQ=60.0;NF=3;NR=0;PP=49;QD=18.3333333333;SC=TATTTTAAGAGATATATATAT;SbPval=1.0;Source=Platypus;TC=19;TCF=11;TCR=8;TR=3;WE=144843081;WS=144843062;set=Platypus	GT:AD:AF:DP	0/1:16,3:0.16:19
chr6	144843091	rs13208386	A	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.483;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr6	144872051	rs1005974	C	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr6	144872272	rs5880596	G	GAC	141.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr6	144872311	rs1554813	A	G	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr6	144904655	rs17793810	G	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:253,101:0.29:354
chr6	145095545	rs10650309	G	GT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-0.690;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr6	146007166	rs702322	G	A	241.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	146007332	rs35230590	C	T	6895.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr6	146012061	rs2142978	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.51;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	146027152	rs118113226	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr6	146056476	rs2235482	G	C	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr6	146056681	rs111332144	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	146112335	rs117045948	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr6	146112348	rs6931553	T	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	146185591	rs189526230	G	A	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.513;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.696;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:65,94:0.59:159
chr6	146234644	rs9497426	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	146242676	rs11326222	GT	G	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.645;QD=10.54;ReadPosRankSum=-0.370;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr6	146243581	rs6917482	C	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	146244081	rs34616835	G	GT	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.769;QD=11.42;ReadPosRankSum=-0.021;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr6	146244743	rs6923545	A	G	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	146254100	rs55757353	T	TC	581.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=1.891;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr6	146262697	rs9285508	G	T	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr6	146268623	rs9386141	T	A	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	146480740	.	TTCTC	T	169	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=18;MMLQ=25;MQ=56.8;NF=2;NR=13;PP=169;QD=11.4666666667;SC=GAAGGTAAGTTTCTCTCTCTC;SbPval=0.32;Source=Platypus;TC=26;TCF=2;TCR=24;TR=15;WE=146480751;WS=146480730;set=Platypus	GT:AD:AF:DP	1/0:11,15:0.58:26
chr6	146707993	rs362913	A	G	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr6	146720669	.	A	T	1739.77	.	AC=1;AF=0.500;AN=2;DP=304;set=Intersection	GT:AD:AF:DP	0/1:209,94:0.31:303
chr6	146720887	rs71706077	TTC	T	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.873;QD=3.55;ReadPosRankSum=-2.643;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr6	146975456	rs71778473	TTA	T	4091.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:5,125:0.96:130
chr6	146975476	rs1322765	T	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:86,48:0.36:134
chr6	146987930	rs9403802	C	T	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-0.246;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:107,43:0.29:150
chr6	147042695	rs11273150	A	AGGGAACATGCAATAATAAGATTTTTAGAGGC	752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.410;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=9.446;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-1.547;QD=9.41;ReadPosRankSum=-1.053;SOR=1.896;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr6	147049641	rs11155480	T	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr6	147049868	rs3747756	G	A	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:144,85:0.37:229
chr6	147054241	rs146394886	A	ATTAATGTAC	628.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr6	147054410	rs67991595	T	TA	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.574;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr6	147054965	rs9390419	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,31:0.33:94
chr6	147066954	rs9647636	G	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr6	147103358	rs1325701	A	G	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,78:0.65:120
chr6	147103416	rs259405	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr6	147106841	rs259391	A	G	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:116,184:0.61:300
chr6	147136212	rs1052444	A	T	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.996;QD=4.83;ReadPosRankSum=0.823;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:160,72:0.31:232
chr6	147136244	rs259370	A	G	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.122;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.213;QD=4.09;ReadPosRankSum=0.707;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:179,73:0.29:252
chr6	147631201	rs6928919	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr6	147631421	rs11415538	T	TA	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.060;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr6	147635318	rs5880705	T	TAC	1249.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr6	147635385	rs1039083	C	G	3630.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:56,97:0.63:153
chr6	147635413	rs1039084	A	G	3608.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:49,95:0.66:144
chr6	147635547	rs1039085	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr6	147680359	rs9390459	A	G	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:93,200:0.68:293
chr6	147830073	rs66812182	C	T	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:99,148:0.60:247
chr6	148761456	rs2272998	G	C	6108.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr6	148761603	rs9498038	C	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	148789478	rs17714869	T	C	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr6	148808624	rs2294778	G	C	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.80;ReadPosRankSum=-0.937;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	148808631	rs2294779	G	T	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.51;ReadPosRankSum=-0.989;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr6	148835416	rs1057793	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-1.511;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:44,21:0.32:65
chr6	148848919	rs2110198	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:24,6:0.20:30
chr6	148865257	rs208696	A	G	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:237,104:0.30:341
chr6	149068778	rs45490997	C	T	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:72,198:0.73:270
chr6	149275131	rs10080254	T	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	149285719	rs3734377	A	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr6	149340390	rs2275423	G	C	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr6	149539773	rs2272901	G	A	2876.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:45,121:0.73:166
chr6	149700805	rs2031450	G	A	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	149700873	rs9498341	A	T	503.56	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:2,18:0.90:20
chr6	149700942	rs9498342	C	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr6	149718650	rs237028	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr6	149719400	rs628488	G	A	335.81	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr6	149721690	rs237025	G	A	7381.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:188,341:0.64:529
chr6	149772645	rs415434	A	G	2987.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:68,131:0.66:199
chr6	149780695	rs384163	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr6	149780737	rs140859	G	GACTA	1832.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr6	149782798	rs411091	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	149782847	rs411308	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,32:0.78:41
chr6	149782908	rs376757	A	G	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:26,70:0.73:96
chr6	149795261	rs382720	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr6	149795342	rs7747354	C	T	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:57,89:0.61:146
chr6	149795522	rs7747948	G	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:69,164:0.70:233
chr6	149842148	rs373268154	CA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.995;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=2.407;QD=2.16;ReadPosRankSum=0.667;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr6	149846372	.	TA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=2.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.099;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr6	149953835	rs9322202	A	G	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	149953981	rs9800580	C	T	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:60,103:0.63:163
chr6	149959451	rs142372487	T	C	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:69,114:0.62:183
chr6	149983216	rs3924871	G	A	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:66,131:0.66:197
chr6	149997657	rs62439843	T	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.28;ReadPosRankSum=2.390;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:13,44:0.77:57
chr6	150004779	rs3798761	A	G	7028.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:163,325:0.67:488
chr6	150023348	rs4870509	C	G	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr6	150039148	rs12174349	G	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:86,156:0.64:242
chr6	150052698	.	T	TA	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.812;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr6	150057902	.	G	A	568.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr6	150064733	rs34447002	CA	C	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-0.753;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:11,18:0.62:29
chr6	150064968	rs58509133	C	CT	1197.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr6	150064977	rs1572229	T	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr6	150067675	rs10872646	A	G	5993.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:177,277:0.61:454
chr6	150093678	rs3805748	C	T	6674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.24;ReadPosRankSum=-2.486;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:81,164:0.67:245
chr6	150093682	rs3805749	C	T	6737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.63;ReadPosRankSum=-1.958;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:83,170:0.67:253
chr6	150114606	rs12182220	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr6	150114745	rs4816	G	A	2782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=-0.332;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:63,131:0.68:194
chr6	150123316	rs11297063	CT	C	662.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,48:0.75:64
chr6	150163911	rs2275045	T	C	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:93,131:0.58:224
chr6	150164378	rs2184370	G	A	5406.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:128,241:0.65:369
chr6	150184722	rs187967019	C	T	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr6	150211123	rs2151910	A	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:50,71:0.59:121
chr6	150263186	rs4343924	A	C	25107.77	.	AC=2;AF=1.00;AN=2;DB;DP=923;set=Intersection	GT:AD:AF:DP	1/1:0,920:1.00:920
chr6	150266578	rs149454018	T	C	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:120,41:0.25:161
chr6	150266740	rs62439758	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.085;ClippingRankSum=0.000;DB;DP=648;ExcessHet=3.0103;FS=13.764;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-15.064;QD=0.57;ReadPosRankSum=-7.223;SOR=2.033;set=HC	GT:AD:AF:DP	0/1:568,79:0.12:647
chr6	150267527	rs2282235	A	C	9258.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:273,420:0.61:693
chr6	150269778	rs6940581	A	G	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:54,113:0.68:167
chr6	150285302	rs74844020	G	A	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:67,162:0.71:229
chr6	150285381	rs138505973	TGAAC	T	994.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr6	150290090	rs77852780	T	G	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:33,62:0.65:95
chr6	150322408	rs11752135	T	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-2.311;QD=4.35;ReadPosRankSum=-0.554;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr6	150341260	rs199848645	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr6	150341990	rs9397120	A	G	9567.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.66;MQRankSum=-1.247;QD=28.06;ReadPosRankSum=0.376;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:2,339:0.99:341
chr6	150341993	rs9384047	C	A	15396.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.75;QD=44.24;SOR=1.502;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr6	150342232	rs61730071	G	A	26932.77	.	AC=2;AF=1.00;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	1/1:0,992:1.00:992
chr6	150343148	rs78563624	A	C	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.33;QD=26.24;SOR=4.271;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	150343211	rs202055124	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.19;QD=29.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	150346532	rs1543547	T	C	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	150346740	rs1544123	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	150385730	rs912558	T	G	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr6	150385977	rs912557	C	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	150387302	rs669009	A	T	6937.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr6	150387312	rs6935471	A	G	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	150390313	rs622317	G	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr6	150464356	rs2297672	A	G	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr6	150713769	rs672766	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	150716696	rs612421	T	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:44,76:0.63:120
chr6	150921346	rs139317884	A	G	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.98;ReadPosRankSum=0.674;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	151125710	rs71786784	G	GA	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.611;QD=2.62;ReadPosRankSum=-0.284;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:94,41:0.30:135
chr6	151130691	rs712216	G	C	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	151130920	rs712215	A	G	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.24;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	151142261	rs803387	T	C	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	151151954	rs145019861	A	G	5239.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:132,240:0.65:372
chr6	151152656	rs803411	T	C	10288.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr6	151186857	.	C	CCCGCCG	2054.73	.	AC=1;AF=0.500;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	0/1:86,57:0.40:143
chr6	151187349	rs9397361	C	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=0.034;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr6	151197152	rs2073067	C	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:66,23:0.26:89
chr6	151199071	rs2073063	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr6	151219963	rs149723194	G	GATT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-1.507;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:17,3:0.15:20
chr6	151220245	rs803419	A	G	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr6	151247439	rs803455	A	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	151257871	rs742832	G	A	2611.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:54,120:0.69:174
chr6	151258122	rs742831	G	A	1466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.104;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.177;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.05;ReadPosRankSum=-0.563;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr6	151258127	rs742830	G	A	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=0.441;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:21,34:0.62:55
chr6	151259770	rs6933598	C	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr6	151260002	rs3734416	T	C	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-0.098;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:34,75:0.69:109
chr6	151260063	rs12214461	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr6	151266504	rs803445	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.633;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr6	151281567	rs1771798	T	C	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-0.588;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:89,56:0.39:145
chr6	151281668	rs7739248	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr6	151281707	rs1771796	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	151293277	rs9478878	C	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr6	151336739	rs509474	C	G	2223.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:266,131:0.33:397
chr6	151362895	rs140096864	CTTG	C	6945.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr6	151362942	rs1983750	T	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr6	151413828	rs2295734	C	A	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	151665302	rs6941075	T	A	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	151669459	rs376944975	CAAAA	C	1049.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;QD=37.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr6	151669875	rs10872670	A	G	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	151670172	rs3734799	A	C	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr6	151670897	rs900654	T	C	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr6	151673630	rs3734796	A	G	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:116,74:0.39:190
chr6	151674116	rs3842128	T	TGAG	18585.73	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr6	151674326	rs3823310	A	C	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr6	151686905	rs11155787	C	T	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:280,134:0.32:414
chr6	151694504	rs9479023	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr6	151726300	rs1065310	G	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr6	151726756	rs3757314	T	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chr6	151726829	rs3757315	C	T	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:64,118:0.65:182
chr6	151742541	rs4870017	T	C	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	151743629	rs6912830	A	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr6	151754273	rs6904364	T	C	10839.77	.	AC=1;AF=0.500;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	0/1:191,494:0.72:685
chr6	151766397	rs73783025	G	A	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:110,162:0.60:272
chr6	151773504	rs13201167	T	C	1497.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr6	151773831	rs111270458	C	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr6	151785551	rs17081270	A	G	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr6	151857370	rs1532401	T	C	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	151857594	rs6931664	A	G	5969.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	151859314	rs4870034	A	G	8577.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	151869725	rs3842129	A	AT	1230.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	151894278	rs4242277	G	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr6	151894505	rs953767	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	151894716	rs1807906	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr6	151914421	rs9383930	A	G	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:185,82:0.31:267
chr6	151936677	rs6929137	G	A	4074.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:73,183:0.71:256
chr6	151939181	rs3734804	G	A	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:85,137:0.62:222
chr6	152201875	rs4986934	T	C	3632.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	152265282	rs55740371	A	AT	1496.73	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr6	152265522	rs1801132	G	C	3821.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:126,175:0.58:301
chr6	152382014	rs9322354	A	G	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr6	152382087	rs3841686	C	CT	556.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr6	152382311	rs2273206	G	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr6	152382325	rs2273207	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr6	152420095	rs2228480	G	A	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:113,70:0.38:183
chr6	152446316	rs2813561	C	T	4194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.57;ReadPosRankSum=-0.056;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:75,103:0.58:178
chr6	152446320	rs2813562	C	T	4284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.91;ReadPosRankSum=-1.809;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:74,113:0.60:187
chr6	152446487	rs2813563	C	T	3224.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:101,151:0.60:252
chr6	152453291	rs35591210	G	A	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:30,68:0.69:98
chr6	152477354	.	G	A	175.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr6	152489038	rs997769	T	C	2817.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:352,161:0.31:513
chr6	152489294	rs998147	T	C	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.11;ReadPosRankSum=-0.250;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:157,72:0.31:229
chr6	152522812	rs2673776	T	G	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr6	152523143	rs2635441	G	A	323.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr6	152529260	rs3798756	G	A	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,117:0.65:181
chr6	152534946	rs684807	T	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.32;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr6	152534946	.	TT	AA,AT	768	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=1,5;NR=13,45;PP=245,768;QD=21.3191339187;SC=TTATTCTTACTTCTCTAGCAT;SbPval=0.75;Source=Platypus;TC=51;TCF=5;TCR=46;TR=14,50;WE=152534955;WS=152534936;set=Platypus	GT:AF:DP	0/1:0.27:51
chr6	152534947	rs2763029	T	A	298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.494;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=0.984;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr6	152539572	.	T	TA	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.227;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:62,26:0.30:88
chr6	152540278	rs2147377	A	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	152545865	rs17082358	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr6	152552375	rs2274142	G	A	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr6	152558197	rs11751190	G	A	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr6	152565897	rs3888239	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr6	152570415	rs6557210	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:145,74:0.34:219
chr6	152629586	rs9371581	G	A	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr6	152629617	rs9383985	C	T	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr6	152629772	rs55633181	GA	G	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=10.395;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.676;QD=9.55;ReadPosRankSum=1.829;SOR=3.284;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr6	152629815	rs4112833	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	152631256	rs11292345	CA	C	169.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	152638209	rs1890100	A	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr6	152647681	rs2306916	A	T	7424.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr6	152652034	rs6911096	A	T	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	152653037	rs9478314	T	C	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr6	152658142	rs9479297	T	C	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr6	152658191	rs9479298	T	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr6	152658216	rs9479299	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr6	152660310	rs4870095	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr6	152665261	rs4645434	C	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr6	152665464	rs35003170	TC	T	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	152671475	rs9478320	A	C	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr6	152671553	rs9478321	A	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr6	152671919	rs5880967	G	GA	4458.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr6	152671975	rs1387549	A	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	152673147	rs6908392	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	152673519	rs6932325	A	C	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr6	152673543	rs11370219	C	CT	628.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=0.190;SOR=2.266;set=HC	GT:AD:AF:DP	0/1:9,41:0.82:50
chr6	152675854	rs9397102	A	G	13970.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr6	152680710	rs78531855	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=4.52;ReadPosRankSum=2.284;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr6	152683183	rs7771657	G	T	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	152683199	rs7771662	G	A	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	152683413	rs4407724	G	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	152685864	.	G	GAA	392.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.38;QD=35.70;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	152685865	.	G	GGAAGGGAGGA	2162.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.24;QD=45.06;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr6	152688567	rs7775637	C	T	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr6	152690559	rs1873176	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	152694184	rs6913579	T	C	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr6	152730090	.	C	CA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=16.988;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.817;QD=2.20;ReadPosRankSum=0.485;SOR=0.046;set=HC	GT:AD:AF:DP	0/1:53,21:0.28:74
chr6	152787034	.	A	G	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=8.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.173;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:30,68:0.69:98
chr6	153019099	rs71713548	GAGAT	G	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.336;QD=8.75;ReadPosRankSum=-0.301;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:61,23:0.27:84
chr6	153296370	rs7763565	G	A	2266.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:271,132:0.33:403
chr6	153296541	rs2073260	G	C	8616.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr6	153296772	rs9479472	A	G	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr6	153311001	rs3860814	A	C	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.95;QD=28.91;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	153311333	rs3215595	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.899;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.599;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr6	153315695	rs3192723	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;MQ=55.13;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	153315921	rs3799133	G	A	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	153316018	rs6941558	G	A	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr6	153323594	rs3818123	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr6	153323709	rs3818125	T	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	153323806	rs3818126	A	G	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.685;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.195;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr6	153323896	rs3818127	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	153332926	rs34837755	AATAAT	A	1192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.82;ReadPosRankSum=1.251;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr6	153344531	rs685449	T	A	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:117,65:0.36:182
chr6	153345309	rs545323	C	T	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	153345647	rs2073259	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr6	153603373	rs9371678	T	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=3.099;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:79,30:0.28:109
chr6	154331770	rs115788842	T	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:134,49:0.27:183
chr6	154414446	rs540825	A	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:182,83:0.31:265
chr6	154414563	rs675026	A	G	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=3.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.580;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:122,53:0.30:175
chr6	154414573	rs562859	C	T	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.289;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:112,50:0.31:162
chr6	154415434	rs660756	G	T	1627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.303;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:278,106:0.28:384
chr6	154428537	rs650825	G	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr6	154428666	rs677830	C	T	1742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.007;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:73,85:0.54:158
chr6	154428702	rs650245	A	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr6	154429085	rs71021021	AT	A	164.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr6	154431393	rs497332	C	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr6	154431565	rs606545	G	A	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=0.215;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:80,80:0.50:160
chr6	154520741	rs7341264	C	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr6	154535444	rs2293537	A	G	3220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.861;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:485,202:0.29:687
chr6	154542491	rs2272381	A	G	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-0.597;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:154,84:0.35:238
chr6	154567676	rs7759388	G	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:105,52:0.33:157
chr6	154568823	.	GA	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.25;ReadPosRankSum=-0.738;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr6	154727825	rs12528985	C	T	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr6	154762394	rs9384219	A	G	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.014;QD=13.72;ReadPosRankSum=-0.305;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chr6	154763401	rs6557351	G	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:64,89:0.58:153
chr6	154763522	rs6907693	T	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr6	154771277	rs9322467	A	G	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	154771449	rs4870285	T	C	11382.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:2,451:1.00:453
chr6	155094988	rs7762129	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr6	155116285	rs79232250	TTC	T	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.360;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.50;ReadPosRankSum=0.366;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr6	155123034	.	AAG	A	220	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=2;MGOF=29;MMLQ=28;MQ=60.98;NF=1;NR=1;PP=220;QD=127.0;SC=TACTGACTAAAAGTTTTAGGT;SbPval=0.65;Source=Platypus;TC=12;TCF=7;TCR=5;TR=2;WE=155123043;WS=155123024;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr6	155124583	rs3757291	T	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr6	155129784	rs66499928	CCTTT	C	1659.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:106,49:0.32:155
chr6	155152311	rs911191	C	G	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr6	155485535	rs1032140	G	A	734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.777;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:160,56:0.26:216
chr6	155485554	rs1032141	G	A	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:211,94:0.31:305
chr6	155561760	rs4259257	T	C	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr6	155566889	rs11435976	G	GT,GTT	1950.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=6.639;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.421;QD=15.99;ReadPosRankSum=0.954;SOR=0.203;set=HC	GT:AD:AF:DP	1/2:15,49,58:0.40,0.48:122
chr6	155569378	rs2274823	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr6	155571113	rs3011902	A	G	5991.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr6	155572986	rs3011899	G	A	199.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	155574207	rs2274824	T	C	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-0.807;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:56,110:0.66:166
chr6	155577823	rs1571766	C	T	10064.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr6	155579246	rs3734322	A	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	155581289	rs4869849	C	A	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr6	155581619	rs912721	G	A	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr6	155596901	rs927718	T	C	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr6	155597147	rs1555774	C	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:284,109:0.28:393
chr6	155606325	rs324356	C	T	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=0.072;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:135,85:0.39:220
chr6	155606460	rs3734320	T	A	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr6	155606531	rs324357	A	G	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	155635585	rs162981	A	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	155635624	rs1334688	A	G	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	155635637	rs1334687	A	C	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr6	155744013	rs1889503	C	G	1543.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr6	155750035	rs231954	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:197,84:0.30:281
chr6	155750219	rs231955	G	A	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	155774608	rs34960420	C	T	5712.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:172,267:0.61:439
chr6	155775980	rs12195525	G	T	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:101,175:0.63:276
chr6	155776854	rs6906426	T	G	4467.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:101,197:0.66:298
chr6	156275691	rs4870405	G	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	157101072	rs1261893	A	C	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr6	157405761	rs3734440	G	A	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	157405930	rs3734441	G	A	9791.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr6	157495951	rs372586664	AT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.586;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-0.749;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr6	157502370	rs113570533	T	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr6	157802573	rs188489654	C	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr6	158049351	.	C	CT	377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-0.409;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:33,30:0.48:63
chr6	158068481	rs616538	T	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr6	158074504	rs636169	A	G	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,70:0.54:129
chr6	158322886	rs11367433	CT	C	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.575;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr6	158327269	rs9365567	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr6	158330765	rs3211067	G	A	1676.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:80,79:0.50:159
chr6	158331150	rs2076573	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr6	158357201	rs724897	T	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr6	158358654	rs144090871	GAAAC	G	2222.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr6	158359813	rs11324404	GA	G	1522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=64.62;MQRankSum=12.455;QD=9.52;ReadPosRankSum=-0.056;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:80,80:0.50:160
chr6	158359816	.	GT	G	1709	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=9;HapScore=4;MGOF=4;MMLQ=27;MQ=64.56;NF=5;NR=33;PP=1709;QD=45.3421052632;SC=GCTGGTGGAAGTTTTTTTTTC;SbPval=0.35;Source=Platypus;TC=88;TCF=9;TCR=79;TR=38;WE=158359833;WS=158359805;set=Platypus	GT:AD:AF:DP	0/1:50,38:0.43:88
chr6	158359817	rs113710023	T	G	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=64.93;MQRankSum=12.374;QD=9.69;ReadPosRankSum=0.539;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:78,80:0.51:158
chr6	158361899	rs912879	C	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	158438933	rs1109511	G	A	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr6	158438957	rs9459137	T	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr6	158450074	rs143503873	C	CCCTGCAGAGGGTGGGCCCTGGGTCT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=-0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.589;QD=16.97;ReadPosRankSum=1.050;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	158454377	rs2295891	C	T	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr6	158475941	rs2296510	T	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr6	158487406	rs1009012	A	T	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr6	158487734	rs3215807	C	CT	1400.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr6	158489863	rs736741	C	T	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr6	158490779	rs751873	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	158495863	rs12203105	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr6	158497717	rs2296508	T	C	1825.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,91:0.51:180
chr6	158499097	rs3831094	G	GT	363.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr6	158499302	rs2296507	G	T	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=1.929;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:36,32:0.47:68
chr6	158502137	rs2256014	G	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	158502590	rs173263	C	A	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	158504737	rs191483073	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr6	158504981	rs2236401	C	T	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:121,107:0.47:228
chr6	158505088	rs1744173	A	G	7903.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr6	158507981	rs2296506	G	A	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:115,114:0.50:229
chr6	158509632	rs149011599	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr6	158509750	rs350289	A	G	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	158515111	rs13217929	C	T	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr6	158517308	rs2502601	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:56,30:0.35:86
chr6	158517451	rs2502600	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr6	158535720	rs150169784	T	TTATAAAATGAGATAATACATTCAAGGAA	469.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr6	158536116	rs2502604	A	T	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr6	158569886	rs9356399	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.225;QD=7.09;ReadPosRankSum=-1.032;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:70,48:0.41:118
chr6	158570024	rs71027384	A	AT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.765;QD=1.68;ReadPosRankSum=1.095;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr6	158571501	rs6929274	G	A	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=1.020;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:27,26:0.49:53
chr6	158571655	rs6929520	G	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=-0.851;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr6	158734913	rs115104209	T	C	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=1.111;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr6	158734913	.	TCA	CTG	101	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=101;QD=82.2339374311;SC=CTAATTAGATTCAGGTCAGTC;SbPval=1.0;Source=Platypus;TC=6;TCF=4;TCR=2;TR=2;WE=158734923;WS=158734911;set=Platypus	GT:AD:AF:DP	1/0:4,2:0.33:6
chr6	158734914	rs59586926	C	T	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=1.111;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr6	158734915	rs34768693	A	G	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.29;ReadPosRankSum=1.111;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr6	158735087	rs9364951	C	T	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.24;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	158735090	rs7756620	T	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=1.153;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	158923434	rs9364968	G	C	12320.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr6	158924088	rs914690	T	C	9932.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr6	158924595	rs3749853	A	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:136,136:0.50:272
chr6	158993341	rs34964890	CATA	C	3039.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr6	158994577	rs4709217	T	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr6	159010822	rs188053169	T	C	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.930;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=1.645;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:146,124:0.46:270
chr6	159026194	rs117716624	G	A	77.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.282;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=1.150;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr6	159028203	rs35956081	G	A	503.94	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:2,21:0.91:23
chr6	159028476	rs3734475	G	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr6	159028488	rs3734474	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr6	159029237	.	CAGGTGCTGACCCCGCAGAGGTATGGGGTGCTCTCTGCT	C	1006.73	.	AC=1;AF=0.500;AN=2;DP=86;set=Intersection	GT:AD:AF:DP	0/1:47,30:0.39:77
chr6	159029342	rs6925091	G	C	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:101,73:0.42:174
chr6	159046076	rs6905898	T	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	159047382	rs34976165	T	C	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.765;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:60,64:0.52:124
chr6	159047536	rs16900886	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr6	159047668	rs71030180	TTTCA	T	5912.73	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:191,157:0.45:348
chr6	159049367	rs4708800	T	C	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:157,159:0.50:316
chr6	159050632	rs36092159	T	C	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr6	159050889	rs2278612	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr6	159058659	rs35378330	A	C	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,20:0.40:50
chr6	159065758	rs2306751	C	G	8560.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr6	159128430	rs59396937	CT	C	259	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-1.375;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr6	159139270	rs41267057	C	T	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr6	159146690	rs147871222	CTTTTTTTG	C	7602.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	159181885	rs3127155	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	159183351	rs9347251	T	C	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr6	159184462	rs2291387	A	G	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr6	159185563	rs3123101	T	A	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr6	159188128	rs2242318	A	G	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	159190800	rs3127177	C	G	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:135,89:0.40:224
chr6	159191788	rs3212308	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr6	159192045	rs1038537	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	159192575	rs3127181	A	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	159197371	rs9346767	T	C	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr6	159204426	rs7769862	T	A	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	159204786	rs3123111	C	T	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	159205475	rs3127217	T	C	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	159205632	rs9364995	C	T	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:64,74:0.54:138
chr6	159205668	rs3103003	G	A	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr6	159210662	rs140055516	TTTTC	T	2348.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	159239315	rs6907017	G	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr6	159262953	rs3127158	T	C	2253.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:70,101:0.59:171
chr6	159291490	rs6455609	G	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	159294541	.	T	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.764;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr6	159316430	rs9457507	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr6	159398633	rs3756988	T	C	2858.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:218,146:0.40:364
chr6	159398700	rs3756987	C	T	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:180,116:0.39:296
chr6	159398764	rs12191022	G	A	1516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.514;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.15;ReadPosRankSum=1.830;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:129,83:0.39:212
chr6	159399348	rs768994	A	G	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr6	159404862	rs2143651	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr6	159407208	rs28627682	G	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr6	159407446	rs34582178	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:38,49:0.56:87
chr6	159414811	rs77876414	C	T	2026.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.656;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:169,109:0.39:278
chr6	159414843	rs16889317	G	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:201,151:0.43:352
chr6	159414899	rs16889320	T	C	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:184,169:0.48:353
chr6	159420574	rs10945587	T	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr6	159590734	rs295332	T	C	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-2.970;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr6	159618303	rs371373	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	159618397	rs371023	C	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:60,82:0.58:142
chr6	159620925	rs294923	G	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:38,36:0.49:74
chr6	159642860	rs419281	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr6	159646853	rs389041	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr6	159647454	rs558804	A	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.184;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:11,24:0.69:35
chr6	159650722	rs57447691	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr6	159650978	rs509648	A	G	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr6	159652840	rs560990	A	T	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr6	159652931	rs420137	G	C	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	159653635	rs381639	C	G	4546.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:212,218:0.51:430
chr6	159654487	rs404435	G	T	12164.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr6	159654551	rs370434	C	G	13274.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr6	159654829	rs638551	G	A	7528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=0.494;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:332,364:0.52:696
chr6	159654913	rs653521	C	T	3845.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:166,175:0.51:341
chr6	159654994	rs402388	A	C	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr6	159655084	rs420054	C	G	7115.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:6,254:0.98:260
chr6	159655102	rs436743	A	G	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr6	159655326	rs3003174	T	C	11604.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr6	159655383	rs2501176	A	G	29119.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr6	159655402	rs2932988	A	G	31474.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,764:1.00:764
chr6	159655516	rs77131924	T	C	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:233,239:0.51:472
chr6	159655593	rs2501177	C	T	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr6	159657195	rs420339	G	T	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr6	159659481	rs419836	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	159659523	rs450538	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	159660779	rs141435210	GCCACCACCCGCCGCACGA	G	2897.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr6	159660879	rs386360	C	A	4941.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.590;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.74;ReadPosRankSum=0.508;SOR=0.430;set=HC	GT:AD:AF:DP	1/1:3,189:0.98:192
chr6	159667961	rs294911	T	G	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:52,41:0.44:93
chr6	159669953	rs28487880	G	C	1302.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chr6	159670276	rs294907	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	159670303	rs294906	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr6	159672419	rs551392	G	C	3928.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:131,190:0.59:321
chr6	159672455	rs294899	C	T	2606.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:227,137:0.38:364
chr6	159672542	rs550443	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:80,120:0.60:200
chr6	159677498	rs294890	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:46,50:0.52:96
chr6	159682206	rs294883	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,61:0.49:124
chr6	159686177	rs616504	G	A	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr6	159689004	rs560889	C	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr6	159689049	rs695019	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr6	159692321	rs409691	G	A	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr6	159692559	rs455162	G	A	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr6	160106088	rs2758332	C	A	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.72;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	160106125	rs2855116	A	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	160109051	rs2070994	A	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	160113872	rs4880	A	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	160114360	.	GC	G	277.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.20;ReadPosRankSum=1.057;SOR=3.334;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr6	160133957	rs752779	G	A	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr6	160148348	rs11752345	C	T	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.201;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.785;MLEAC=1;MLEAF=0.500;MQ=62.81;MQRankSum=1.011;QD=12.36;ReadPosRankSum=0.114;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:70,92:0.57:162
chr6	160148406	.	T	TGGCAGGAGGCGGGAGGCGGGA	1568.73	.	AC=2;AF=1.00;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr6	160174456	rs1440	T	G	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr6	160182749	rs2277073	G	A	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr6	160182845	rs2277072	A	G	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	160183325	rs2273819	G	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr6	160196343	rs25683	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr6	160198395	rs3465	G	A	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.709;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=7.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.135;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:100,59:0.37:159
chr6	160199687	rs15982	T	C	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr6	160201295	rs2295901	C	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	160201677	rs3818300	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr6	160202167	rs2295899	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr6	160205991	rs1547093	C	A	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr6	160206631	rs3818299	T	C	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	160207049	rs2273828	T	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr6	160211485	rs2273823	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr6	160211554	rs1128661	T	G	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr6	160211636	rs1128670	G	A	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr6	160211645	rs58504486	GGTT	G	9159.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr6	160211728	rs11757681	T	G	4659.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr6	160218605	rs3777423	A	G	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr6	160218957	rs2342479	C	T	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	160219337	rs4739	G	A	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr6	160221475	rs733319	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	160221690	rs35229038	GCTT	G	2619.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr6	160221992	rs35619423	CTTT	C	1184.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	160224346	rs2146163	T	C	5655.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr6	160225012	rs35435543	T	G	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr6	160225463	rs11757783	G	T	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr6	160225559	rs9364536	G	C	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	160229889	rs35872675	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr6	160234625	rs13220869	G	C	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:133,135:0.50:268
chr6	160236976	rs7739963	T	C	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:90,77:0.46:167
chr6	160237190	.	C	CA	865.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.64;ReadPosRankSum=0.076;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:1,22:0.96:23
chr6	160237192	.	C	G	536	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=6;HapScore=2;MGOF=64;MMLQ=23;MQ=59.05;NF=0;NR=14;PP=536;QD=40.7693723248;SC=TCCCCACCCCCCCACACCCCT;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=14;WE=160237200;WS=160237178;set=Platypus	GT:AD:AF:DP	1/0:3,14:0.82:17
chr6	160237192	.	C	CCG	865.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.35;ReadPosRankSum=-0.475;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr6	160237489	rs2342480	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr6	160237662	rs199990987	CTT	C	106.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.68;ReadPosRankSum=-1.539;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	160239461	rs41267791	G	A	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:28,39:0.58:67
chr6	160239712	rs5012271	C	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:119,118:0.50:237
chr6	160239835	rs9347350	T	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr6	160241440	rs7775650	G	C	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr6	160465486	.	TTGTC	T	60	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=23;MQ=60.0;NF=2;NR=0;PP=60;QD=46.5;SC=AGTCACTTCTTTGTCTGCGTG;SbPval=1.0;Source=Platypus;TC=4;TCF=2;TCR=2;TR=2;WE=160465497;WS=160465476;set=Platypus	GT:AD:AF:DP	1/0:2,2:0.50:4
chr6	160465753	rs609207	T	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	160468278	rs998075	A	G	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:122,103:0.46:225
chr6	160468383	rs998074	T	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr6	160479789	rs8191832	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr6	160479882	rs2274849	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chr6	160481537	rs7746102	T	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr6	160481757	rs371485671	C	T	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr6	160484773	rs112146659	TA	T	85.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=9.47;ReadPosRankSum=0.282;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr6	160486083	rs8191863	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr6	160489215	rs8191867	CAG	C	3137.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:83,85:0.51:168
chr6	160494409	rs629849	A	G	10614.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr6	160505199	rs614754	C	G	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr6	160511250	rs1050026	T	A	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr6	160543148	rs12208357	C	T	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:124,151:0.55:275
chr6	160551204	rs683369	G	C	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:52,70:0.57:122
chr6	160579527	rs622591	C	T	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:67,55:0.45:122
chr6	160638357	rs8177524	G	T	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:37,41:0.53:78
chr6	160645832	rs316003	C	T	3835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=5.834;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=0.712;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:194,191:0.50:385
chr6	160645921	rs3219197	C	CT	743.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:57,45:0.44:102
chr6	160666637	.	A	G	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-1.971;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:39,27:0.41:66
chr6	160666660	rs11422119	A	AC	565.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr6	160668186	rs3219195	CCT	C	310.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr6	160668389	rs2279463	A	G	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=1.372;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chr6	160670282	rs316019	A	C	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr6	160670494	rs316018	A	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr6	160670533	rs316017	C	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr6	160671500	rs316016	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr6	160677614	rs2774230	G	C	1310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.279;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:56,64:0.53:120
chr6	160830047	rs71033578	C	CT	135.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-0.076;QD=7.99;ReadPosRankSum=-0.113;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr6	160858188	rs2292334	G	A	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;MQ=59.79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	160868668	rs3918286	A	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr6	160868687	rs3918287	GC	G	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	160872151	rs1810126	C	T	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr6	160952838	rs3124784	G	A	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:4,216:0.98:220
chr6	160953035	rs3127596	A	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr6	160969629	rs1801693	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr6	160969738	rs10755578	C	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr6	161006172	rs41272110	T	G	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:113,111:0.50:224
chr6	161007496	rs7765781	G	C	2284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=1.105;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:57,109:0.66:166
chr6	161007538	rs7765803	G	C	1802.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr6	161010766	rs7453899	A	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr6	161097590	rs12525588	A	T	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:61,49:0.45:110
chr6	161136058	rs4252105	T	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr6	161137779	rs14224	T	C	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:80,175:0.69:255
chr6	161139480	rs1130656	C	T	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr6	161139502	rs2295368	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr6	161160083	rs2859879	G	A	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:49,101:0.67:150
chr6	161162350	rs142551860	G	A	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:195,134:0.41:329
chr6	161173946	rs11060	T	G	3426.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:104,156:0.60:260
chr6	161469455	rs9346846	T	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	161469774	rs4559074	G	A	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr6	161491684	rs34018542	G	T	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr6	161502094	rs9347479	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr6	161509003	rs9355332	T	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr6	161517964	rs2177587	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr6	161519350	.	CCTGCTG	C,CCTG	8932.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=435;set=Intersection	GT:AF:DP	1/2:0.12,0.87:361
chr6	161531006	rs4709493	G	C	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr6	161532855	rs35961625	CT	C	11666.73	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr6	161557662	rs3734462	G	A	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=1.564;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:172,88:0.34:260
chr6	161557703	rs6455706	A	G	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	161557775	rs3734463	C	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr6	161970150	rs71694927	ATGTG	A	1033.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,32:0.35:92
chr6	161990483	rs3765474	C	T	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:153,72:0.32:225
chr6	161990516	rs3765475	G	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:94,35:0.27:129
chr6	162137099	rs112078090	CATCTT	C	1810.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:112,53:0.32:165
chr6	162137147	rs77332950	C	T	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-2.098;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:101,43:0.30:144
chr6	162622304	rs4709583	A	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	162864317	rs2075923	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr6	163149497	rs2276201	T	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr6	163587146	rs1124951	C	G	5013.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr6	163587312	rs3064931	CAAA	C	5385.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:61,134:0.69:195
chr6	163600225	rs742956	C	A	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:59,150:0.72:209
chr6	163611793	rs6907521	C	T	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr6	163612152	rs6908111	C	T	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr6	163612783	rs6937392	C	A	23084.77	.	AC=2;AF=1.00;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	1/1:0,864:1.00:864
chr6	163733793	rs56761274	T	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.63;ReadPosRankSum=-0.525;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr6	163835706	.	TGAG	T	75	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=27;MQ=58.52;NF=1;NR=2;PP=75;QD=29.6666666667;SC=GCCAAGTGAGTGAGGAGGAGG;SbPval=0.62;Source=Platypus;TC=18;TCF=5;TCR=13;TR=3;WE=163835716;WS=163835696;set=Platypus	GT:AD:AF:DP	1/0:15,3:0.17:18
chr6	163837086	rs4055815	TGGGG	T	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=41.81;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr6	163899794	rs36093967	C	CT	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-1.328;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr6	164891959	rs73024871	C	T	7550.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr6	164891969	rs75907516	T	TTTC	7166.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr6	164892060	.	CCCTTCCTT	C	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.956;ClippingRankSum=-0.000;DP=31;ExcessHet=3.0103;FS=6.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.39;ReadPosRankSum=-0.992;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr6	164962859	rs144747014	TCTTC	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr6	165108670	rs13191120	C	T	7235.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:123,320:0.72:443
chr6	165108725	rs13220455	G	A	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:32,120:0.79:152
chr6	165693624	rs1413100	C	T	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr6	165694945	rs1333501	C	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	165703523	rs17856754	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:69,31:0.31:100
chr6	165706682	rs9459349	T	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	165706935	rs9459350	C	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=0.021;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:138,52:0.27:190
chr6	165713917	rs17852379	C	T	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.322;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr6	165713961	rs510579	A	C	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr6	165713998	rs573814	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr6	165715006	rs479273	G	A	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr6	165715460	rs9459355	G	C	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.485;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:155,81:0.34:236
chr6	165715673	rs9459356	A	G	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:102,61:0.37:163
chr6	165723166	rs575424	A	G	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr6	165806114	rs220794	A	C	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:116,227:0.66:343
chr6	165808605	rs220792	T	C	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,70:0.65:108
chr6	165827194	rs220749	A	G	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr6	165832227	rs220740	C	T	2868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.53;ReadPosRankSum=-1.217;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:79,133:0.63:212
chr6	165845027	rs148704004	AATATACTATATATC	A	1605.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr6	165846658	rs79469867	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr6	165863695	rs57550533	C	CA	6653.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr6	165989776	rs1410479	C	T	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr6	166075362	rs6456003	G	T	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr6	166401512	rs697475	T	A	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr6	166572045	rs3127328	C	T	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:14,49:0.78:63
chr6	166574246	rs3127334	G	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:20,50:0.71:70
chr6	166574308	rs3099267	T	C	1934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=-1.101;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:31,88:0.74:119
chr6	166720806	rs911203	G	C	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr6	166721211	rs13204594	G	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr6	166721224	rs7757150	C	G	3958.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.038;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.71;ReadPosRankSum=-0.905;SOR=0.228;set=HC	GT:AD:AF:DP	1/1:1,153:0.99:154
chr6	166721667	rs115389546	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr6	166736235	rs35147403	CA	C	396.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr6	166736518	rs12191010	G	C	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr6	166737980	rs4710041	G	A	12525.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr6	166739589	rs12190616	A	C	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr6	166739684	rs10806847	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr6	166743160	rs12214812	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	166755975	rs10862	T	C	27599.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,609:1.00:609
chr6	166755979	rs11168	A	C	27710.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,627:1.00:627
chr6	166756130	rs2294335	G	C	9113.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr6	166796433	rs1546854	C	A	7673.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr6	166826255	rs909631	G	A	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr6	166826304	rs760670	T	C	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr6	166827436	rs2235295	T	C	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr6	166831694	rs10946164	C	T	4832.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr6	166862136	rs7746519	G	A	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr6	166862233	rs2230730	T	C	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-1.297;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:160,81:0.34:241
chr6	166862431	rs6932660	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr6	166873010	rs2230729	C	T	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:284,120:0.30:404
chr6	166889160	rs2235278	A	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	166889281	rs4373344	T	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	166889331	rs3830731	CAG	C	3574.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr6	166903962	rs2072832	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr6	166903983	rs2072831	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr6	166903987	rs2072830	C	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr6	166952264	rs1003857	G	A	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=0.534;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:76,27:0.26:103
chr6	167271711	rs943687	T	C	19728.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.33;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr6	167271716	rs9347162	T	C	19388.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,435:1.00:435
chr6	167352104	rs3777722	C	A	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr6	167360389	rs2236313	T	C	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	167440102	.	A	G	1939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.30;ReadPosRankSum=-0.973;SOR=0.383;set=HC	GT:AD:AF:DP	0/1:31,88:0.74:119
chr6	167453519	rs368396376	A	AT	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-0.486;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:65,51:0.44:116
chr6	167550042	rs2071171	C	T	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr6	167571030	rs146361438	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:142,69:0.33:211
chr6	167571048	rs6902566	T	C	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr6	167571266	rs4569938	A	T	4937.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:102,221:0.68:323
chr6	167590454	rs71571482	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.08;QD=27.41;SOR=1.795;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	167590541	rs3737098	G	A	5542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.322;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.52;MQRankSum=-2.764;QD=17.77;ReadPosRankSum=0.131;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:50,262:0.84:312
chr6	167590574	rs2989541	G	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.43;QD=25.78;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr6	167591954	rs200583385	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=47.80;MQRankSum=-4.526;QD=1.39;ReadPosRankSum=-0.938;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:179,39:0.18:218
chr6	167592464	rs60509455	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.12;QD=30.49;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr6	167592524	rs2989545	T	C	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr6	167592576	rs60976240	G	A	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr6	167592656	rs4710193	G	C	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr6	167622070	rs671511	C	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr6	167622205	rs28588506	G	A	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	167704944	rs2076005	T	G	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:140,51:0.27:191
chr6	167728774	rs663606	T	C	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,59:0.46:128
chr6	167728791	rs7739897	G	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,73:0.49:149
chr6	167738595	rs41266329	G	A	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.864;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:40,70:0.64:110
chr6	167738723	rs55788158	C	T	2041.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:70,98:0.58:168
chr6	167752312	.	G	GTTCCTTCC,GTTCC	1118.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=62;set=Intersection	GT:AF:DP	1/1:1.00:25
chr6	167754661	rs909545	A	G	4487.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:110,190:0.63:300
chr6	167754702	rs909546	C	T	4291.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:98,189:0.66:287
chr6	167754721	rs9457304	G	A	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:97,178:0.65:275
chr6	167771426	rs4616972	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=0.205;QD=11.15;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr6	167772755	rs61091709	C	T	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:196,103:0.34:299
chr6	167786551	rs146852129	T	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr6	167786574	rs201593561	A	T	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:34,31:0.48:65
chr6	167786750	rs143094588	C	A	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.725;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=3.024;MLEAC=1;MLEAF=0.500;MQ=53.06;MQRankSum=-13.259;QD=0.39;ReadPosRankSum=-4.036;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:533,66:0.11:599
chr6	167786961	rs151165498	G	T	5175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=4.078;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-1.675;QD=31.75;ReadPosRankSum=0.817;SOR=1.372;set=HC	GT:AD:AF:DP	0/1:36,127:0.78:163
chr6	167786961	.	GGC	TGT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=23;MQ=53.39;NF=12;NR=120;PP=2944;QD=20;SC=TAAGTCAGTGGGCGCGGCTGA;SbPval=0.7;Source=Platypus;TC=168;TCF=18;TCR=150;TR=132;WE=167786971;WS=167786951;set=Platypus	GT:AD:AF:DP	0/1:36,132:0.79:168
chr6	167786963	rs201342351	C	T	5175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.900;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-1.454;QD=32.35;ReadPosRankSum=0.348;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:34,126:0.79:160
chr6	167789404	rs28409124	C	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;MQ=59.08;set=Intersection	GT:AD:AF:DP	0/1:111,49:0.31:160
chr6	167789493	rs3010590	T	C	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=5.816;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-3.808;QD=4.91;ReadPosRankSum=-0.753;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:122,56:0.31:178
chr6	167789590	rs3010591	C	T	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr6	167789615	rs58620632	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,53:0.70:76
chr6	167789622	rs60376002	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.68;MQRankSum=-5.248;QD=1.17;ReadPosRankSum=-0.534;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:57,11:0.16:68
chr6	167791524	rs17855200	C	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.031;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.12;MQRankSum=-0.010;QD=17.77;ReadPosRankSum=0.152;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:14,39:0.74:53
chr6	167791530	rs17855837	G	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.80;QD=48.99;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr6	167791549	rs3010594	T	G	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.60;QD=26.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr6	167796182	rs62428311	C	G	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr6	167796186	rs6911999	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.14;ReadPosRankSum=-0.461;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr6	167796309	rs17855834	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.804;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=2.062;QD=12.59;ReadPosRankSum=2.727;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr6	167796319	rs17855833	T	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=7.222;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=1.490;QD=13.27;ReadPosRankSum=-0.063;SOR=0.221;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr6	167796415	rs9457321	A	C	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.41;QD=25.90;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr6	167797844	rs75736096	C	T	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr6	167797869	rs77067665	C	G	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr6	167907609	.	T	TAC	1043.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr6	167907677	.	T	TACAC,TACACACAC	3104.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=87;set=Intersection	GT:AF:DP	1/2:0.46,0.54:80
chr6	168226523	rs611440	C	T	12040.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:250,510:0.67:760
chr6	168227754	.	C	A	1062.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,49:0.52:94
chr6	168228026	rs201871553	T	TC	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr6	168265102	rs2301530	A	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:87,37:0.30:124
chr6	168297757	rs11459878	C	CT	3478.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr6	168298875	rs9346511	C	T	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:84,52:0.38:136
chr6	168315978	rs3213590	G	C	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-1.696;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:64,107:0.63:171
chr6	168316118	rs3213591	T	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr6	168317816	rs6906754	A	C	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:81,143:0.64:224
chr6	168317891	.	T	C	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DP=454;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.037;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:316,137:0.30:453
chr6	168317994	rs9364207	C	T	4036.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr6	168323664	rs2301533	A	G	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.930;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:273,98:0.26:371
chr6	168323754	rs639777	G	A	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr6	168325803	rs2301534	C	T	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:50,100:0.67:150
chr6	168343838	rs1132306	T	C	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr6	168344880	rs9346632	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr6	168348401	rs9364210	T	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr6	168348424	rs669861	A	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr6	168348504	rs35550837	CT	C	4180.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:9,212:0.96:221
chr6	168349011	rs9364371	C	T	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.805;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:235,101:0.30:336
chr6	168349206	rs12665666	C	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr6	168376925	.	G	GT	1108	.	AC=1;AF=0.500;AN=2;BRF=0.45;FR=0.5000;HP=3;HapScore=2;MGOF=95;MMLQ=24;MQ=46.95;NF=6;NR=17;PP=1108;QD=49.4347826087;SC=TGCAGTGTGTGGGGAAGGAGG;SbPval=0.61;Source=Platypus;TC=48;TCF=13;TCR=35;TR=23;WE=168376937;WS=168376915;set=Platypus	GT:AD:AF:DP	0/1:25,23:0.48:48
chr6	168377309	rs61743855	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.022;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.987;QD=1.99;ReadPosRankSum=0.838;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:99,23:0.19:122
chr6	168430555	rs60520213	TA	T	260.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr6	168457801	rs3734898	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:88,46:0.34:134
chr6	168457966	rs3734899	G	A	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:120,66:0.35:186
chr6	168458074	rs3734900	G	A	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:65,36:0.36:101
chr6	168459790	rs1465182	G	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.501;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:80,36:0.31:116
chr6	168459792	rs2269680	G	A	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.498;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:84,37:0.31:121
chr6	168459845	rs1548349	G	C	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.550;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:123,55:0.31:178
chr6	168462765	rs3823460	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=1.018;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr6	168467737	rs3816861	G	A	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:370,184:0.33:554
chr6	168468186	rs6906979	G	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:132,75:0.36:207
chr6	168475764	rs9364396	G	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:91,40:0.31:131
chr6	168475822	rs3816859	A	G	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:180,77:0.30:257
chr6	168476198	rs2306943	A	G	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr6	168479604	rs34054991	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:233,131:0.36:364
chr6	168479790	rs11750985	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:169,114:0.40:283
chr6	168482110	rs4708429	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:134,69:0.34:203
chr6	168694594	rs7764061	C	T	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:51,98:0.66:149
chr6	168694788	rs56060091	C	G	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:74,108:0.59:182
chr6	168695227	.	ATG	A	523	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=73;MMLQ=24;MQ=60.0;NF=14;NR=6;PP=523;QD=26.8;SC=ATAATAAAATATGTGTGTGTG;SbPval=0.52;Source=Platypus;TC=21;TCF=15;TCR=6;TR=20;WE=168695236;WS=168695217;set=Platypus	GT:AD:AF:DP	1/0:1,20:0.95:21
chr6	168695309	rs4708710	C	T	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr6	168695345	rs4708711	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,71:0.64:111
chr6	168708751	rs10945499	A	G	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr6	168708793	rs10945500	C	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:138,71:0.34:209
chr6	168708816	rs10945501	T	G	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr6	168709385	rs6925614	T	C	28344.77	.	AC=2;AF=1.00;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr6	168711170	rs1551988	A	G	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:58,123:0.68:181
chr6	168764106	rs72353239	GGAGAGGGAGATT	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.79;ReadPosRankSum=-0.253;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr6	168928225	rs2224209	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr6	168928251	rs2609287	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr6	168928519	rs2609286	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr6	169008822	rs3832407	TC	T	17841.73	.	AC=1;AF=0.500;AN=2;DB;DP=1068;set=Intersection	GT:AD:AF:DP	0/1:382,668:0.64:1050
chr6	169055891	rs34108025	C	T	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.916;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.047;QD=5.59;ReadPosRankSum=2.038;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:86,44:0.34:130
chr6	169064885	rs149700404	TTCCAAGAAAA	T	3788.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:40,94:0.70:134
chr6	169065126	rs9364271	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr6	169066961	rs144774877	TCTTACTCATA	T	8818.73	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:144,225:0.61:369
chr6	169617726	rs8089	A	C	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr6	169617934	rs58423957	GA	G	1452.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:4,75:0.95:79
chr6	169619815	rs10945402	C	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.61;QD=26.61;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr6	169619933	rs113367461	T	TTTCCTTCC	6612.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.06;QD=45.29;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr6	169620247	rs9393165	T	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr6	169622263	rs6605530	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr6	169628169	rs33928942	CAA	C	592.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.739;QD=12.10;ReadPosRankSum=0.445;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr6	169629783	rs6422747	G	A	3358.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:75,150:0.67:225
chr6	169629910	rs6422748	G	C	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr6	169632305	rs145532758	AG	A	6453.73	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:110,211:0.66:321
chr6	169633185	rs11756502	C	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.68;ReadPosRankSum=0.180;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr6	169637456	rs9283850	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:82,150:0.65:232
chr6	169637519	rs9283851	C	T	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr6	169637695	.	C	G	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.643;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:132,49:0.27:181
chr6	169637763	rs9766671	G	C	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:113,209:0.65:322
chr6	169637911	rs9766678	G	A	5577.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:86,251:0.74:337
chr6	169640529	rs6906765	C	T	1792.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:46,76:0.62:122
chr6	169641971	rs61730651	C	T	1380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.949;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.607;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:230,87:0.27:317
chr6	169646199	rs73046008	A	C	4183.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:525,241:0.31:766
chr6	169646409	rs73046010	A	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:156,76:0.33:232
chr6	169648767	rs12178180	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:208,98:0.32:306
chr6	169857451	rs1047910	G	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr6	169982927	rs6941625	T	A	1797.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:39,83:0.68:122
chr6	170034774	rs9478000	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr6	170036309	rs7775504	A	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr6	170043646	rs9295020	A	G	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:48,108:0.69:156
chr6	170049421	rs4145868	T	G	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr6	170052049	rs9478086	T	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:84,128:0.60:212
chr6	170058439	rs41265381	C	T	3025.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:72,137:0.66:209
chr6	170059627	rs3823464	G	A	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:109,142:0.57:251
chr6	170067022	rs3800546	C	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.51;ReadPosRankSum=-2.097;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr6	170070723	rs4236176	A	G	7463.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:226,359:0.61:585
chr6	170102070	.	C	T	759.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr6	170102267	rs4716383	A	G	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:99,164:0.62:263
chr6	170118085	rs7760142	C	T	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr6	170140184	rs9383520	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr6	170155331	rs6459658	A	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr6	170159023	rs6459660	G	A	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:87,122:0.58:209
chr6	170159259	rs17860639	A	G	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr6	170176407	rs4716398	G	A	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:92,164:0.64:256
chr6	170176467	rs4716345	A	G	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:105,194:0.65:299
chr6	170176647	rs4716399	CA	TG	6511.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;JOINED;set=Intersection	GT:AD:AF:DP	0/1:108,164:0.60:272
chr6	170179507	rs3828738	C	T	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr6	170190200	rs3807067	G	A	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:32,101:0.76:133
chr6	170190418	rs3823467	T	G	3371.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:67,148:0.69:215
chr6	170190659	rs3800550	G	T	4849.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:155,222:0.59:377
chr6	170591923	rs1033583	T	G	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr6	170592293	rs2295205	C	G	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr6	170594819	rs2255020	T	C	6911.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr6	170595430	rs2747757	G	C	5660.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr6	170597276	rs2738822	C	T	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:106,118:0.53:224
chr6	170598227	rs2747756	T	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr6	170598352	rs2738821	C	T	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr6	170598368	rs67433119	TCTC	T	4988.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr6	170598940	rs192975006	G	A	3182.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:325,171:0.34:496
chr6	170627651	rs9460113	G	A	14441.77	.	AC=1;AF=0.500;AN=2;DB;DP=1451;set=Intersection	GT:AD:AF:DP	0/1:716,720:0.50:1436
chr6	170628231	rs7774272	C	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,27:0.34:80
chr6	170667530	rs3734773	C	T	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr6	170704444	rs7738466	C	A	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr6	170845354	rs9348278	A	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr6	170858045	rs2076319	C	T	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr6	170858228	rs17860777	C	T	2150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.82;ReadPosRankSum=0.884;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:75,107:0.59:182
chr6	170858332	rs17860779	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr6	170862051	rs4710839	G	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr6	170862300	rs12717	G	C	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:70,140:0.67:210
chr6	170871013	.	A	ACAG	2989	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=26;MQ=59.5;NF=48;NR=78;PP=2989;QD=20;SC=AGCAACAACAACAGCAGCAGC;SbPval=0.06;Source=Platypus;TC=302;TCF=82;TCR=220;TR=126;WE=170871023;WS=170870994;set=Platypus	GT:AD:AF:DP	0/1:176,126:0.42:302
chr6	170871037	rs71815788	GCAA	G	2979.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=9.61;ReadPosRankSum=4.778;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:197,113:0.36:310
chr6	170871049	.	G	GCAA	2151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.309;ClippingRankSum=0.000;DP=591;ExcessHet=3.0103;FS=3.364;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=6.81;ReadPosRankSum=6.387;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:222,94:0.30:316
chr6	170878793	rs1042327	T	C	3211.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:58,147:0.72:205
chr6	170886531	rs8770	T	C	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr6	170887693	rs3173219	G	C	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,53:0.60:89
chr6	170888141	.	T	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-2.354;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr6	170888208	rs960744	A	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr6	170888220	rs17860827	C	CT	146.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr6	170892100	rs9295417	T	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr6	170892444	rs370825740	CT	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.669;SOR=0.098;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr6	170892483	rs17860837	A	AT	1529.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:38,68:0.64:106
chr6	170892848	rs4140615	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr6	170892919	rs113114915	T	TACTC	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr6	170893364	rs4140616	C	T	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr7	286468	.	G	GGACAGGTGAGCCCTTCCTTCCTCCCTCCATCCGC	1067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=12.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=-1.336;SOR=2.168;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr7	286534	rs146778412	A	G	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr7	295683	rs36173688	T	TG	3625.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	296557	rs36164325	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	296739	rs36156504	G	A	13129.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr7	299558	.	T	TTCTC	3471.73	.	AC=2;AF=1.00;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	299642	rs36156024	G	A	9352.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr7	299850	rs36170987	G	T	9366.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr7	299881	rs36139924	A	G	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr7	299976	rs36173075	G	A	6590.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	299987	rs36138803	C	G	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	330822	rs36180337	A	C	19366.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:1,743:1.00:744
chr7	330882	rs4077171	T	G	11729.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=3.074;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	330882	.	TCA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=23;MQ=60.0;NF=35;NR=194;PP=2947;QD=20;SC=CGCGGCGGCTTCAGGGAGGTC;SbPval=0.69;Source=Platypus;TC=237;TCF=41;TCR=196;TR=229;WE=330892;WS=330872;set=Platypus	GT:AD:AF:DP	1/1:8,229:0.97:237
chr7	330884	rs4077172	A	G	11729.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=3.321;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	331086	rs36129019	G	A	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	331427	rs141537626	C	A	8204.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:418,406:0.49:824
chr7	538277	rs34223855	G	C	4947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-0.280;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:128,134:0.51:262
chr7	538284	rs35782510	T	C	4799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.51;ReadPosRankSum=-0.260;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:122,124:0.50:246
chr7	538348	rs12720025	A	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,64:0.50:127
chr7	540518	rs2070958	T	C	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr7	540741	rs1800814	G	A	10400.77	.	AC=1;AF=0.500;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	0/1:544,505:0.48:1049
chr7	550399	rs192632660	A	G	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=9.54;ReadPosRankSum=1.042;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr7	550409	rs183980841	G	A	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=7.99;ReadPosRankSum=1.990;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr7	550737	rs62433334	G	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr7	551946	rs9692018	T	C	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-0.241;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:54,56:0.51:110
chr7	591125	rs71518309	C	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:81,66:0.45:147
chr7	624221	rs9330368	T	G	10908.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:1,405:1.00:406
chr7	624344	rs9330367	C	T	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	624366	rs13221342	G	A	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	624401	rs9330366	C	T	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	646015	rs186595536	G	A	3286.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:165,154:0.48:319
chr7	772025	rs4072597	G	A	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr7	772174	rs4724987	G	A	9271.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	780687	rs62432212	T	C	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	780859	rs6943174	T	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	780980	rs6943337	T	G	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	794471	rs34761279	A	G	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	794576	rs62432239	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	801634	rs142752861	T	TTGAGCCCCAGGCCTCAAACATGTC	2025.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	803342	rs4495324	G	A	3439.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	808588	rs6973614	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	808749	rs62432865	C	T	7051.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:279,340:0.55:619
chr7	808810	rs6946758	C	G	17640.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr7	810219	rs4720951	T	C	14405.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr7	813618	rs4719279	T	C	27405.77	.	AC=2;AF=1.00;AN=2;DB;DP=1020;set=Intersection	GT:AD:AF:DP	1/1:0,1019:1.00:1019
chr7	813650	rs62432869	G	A	38635.77	.	AC=2;AF=1.00;AN=2;DB;DP=1461;set=Intersection	GT:AD:AF:DP	1/1:0,1457:1.00:1457
chr7	813867	rs6973746	C	G	5637.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	814612	rs34943122	G	A	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	814788	rs3922641	G	A	7099.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	821796	.	C	CGTG	10881.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.856;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;MQRankSum=2.414;QD=35.68;ReadPosRankSum=0.562;SOR=1.126;set=HC	GT:AD:AF:DP	1/1:4,301:0.99:305
chr7	821798	.	C	CGTGGCCGCCTCCCGACACGCGGCGTCAGAAACTCGGATCTTCCTGGCGTGGCCGCCTCCCGTCGCGCAGCGTCAGAAACTCGGATCTTCGT	19449.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;MQRankSum=1.509;QD=61.94;ReadPosRankSum=-0.090;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:4,310:0.99:314
chr7	821869	.	G	A	2007	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=20;MMLQ=21;MQ=56.97;NF=90;NR=102;PP=2007;QD=10.6342250653;SC=CCCGTCGCGCGGCGTCAGAAA;SbPval=0.32;Source=Platypus;TC=640;TCF=330;TCR=310;TR=192;WE=821877;WS=821859;set=Platypus	GT:AD:AF:DP	1/0:448,192:0.30:640
chr7	822523	rs4719314	A	G	25552.77	.	AC=2;AF=1.00;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	1/1:0,934:1.00:934
chr7	825114	rs67721251	T	C	10450.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,388:1.00:389
chr7	881668	rs6461378	C	T	22450.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,852:1.00:852
chr7	882895	rs6970511	C	G	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	889858	rs34398649	C	T	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr7	890978	rs7792674	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	891184	rs10628483	C	CGAT	7823.73	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	899710	rs12700166	A	C	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	905786	rs4721952	A	G	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	912755	rs4722034	C	T	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.144;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	918211	rs72423165	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.21;ReadPosRankSum=-1.889;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	925949	rs10226357	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	926077	rs10267796	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	926827	rs4722203	T	C	13546.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr7	933234	rs35157448	T	A	2486.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.702;MLEAC=2;MLEAF=1.000;MQ=59.31;MQRankSum=4.153;QD=41.45;ReadPosRankSum=2.205;SOR=1.733;set=HC	GT:AD:AF:DP	1/1:2,58:0.97:60
chr7	933240	rs34784960	C	CGGT	2641.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr7	940181	rs10256887	C	T	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:121,88:0.42:209
chr7	940257	rs199900149	G	GGGGCAAAGGC	2267.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:97,111:0.53:208
chr7	940258	rs113839920	G	GGGCAAAGGCA	2013.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=-5.445;QD=8.95;ReadPosRankSum=3.310;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:129,96:0.43:225
chr7	940267	rs3824079	T	C	9735.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	940296	.	AGCGCTGGGGTCCCCACAGAG	A,AGGGCGCTGGGGTCCCCACAGAG,AGGGCTGGGGTCCCCACAGAGGCGCTGGGGTCCCCACAGAG	4963.73	.	AC=1,1,0;AF=0.500,0.500,0.00;ALERT;AN=2;DP=154;set=Intersection	GT:AF:DP	1/2:0.51,0.49:84
chr7	940298	.	C	CTGGGGTCCCCACAGAGGG	1215.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.236;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:43,38:0.47:81
chr7	940501	rs72074799	AGAAGGGCC	A	1943.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:36,50:0.58:86
chr7	940724	rs11765973	G	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:74,59:0.44:133
chr7	943685	rs74656328	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=0.194;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	943699	rs62430821	G	A	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=-0.900;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	943711	rs10282526	T	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.79;ReadPosRankSum=-0.208;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr7	943998	rs3824077	C	T	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	944683	rs1881121	C	T	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr7	945002	rs71020536	G	GA	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.503;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=1.167;QD=14.27;ReadPosRankSum=-4.490;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr7	960705	rs10250309	T	C	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr7	966926	rs3824074	G	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr7	974905	rs71538121	A	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	1015021	rs3735678	C	T	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:164,174:0.51:338
chr7	1023013	rs2272375	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	1023052	rs75358992	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	1023995	rs34743661	A	AG	8825.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	1024002	rs3735689	T	C	9001.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr7	1024581	rs3824081	T	C	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	1024855	rs3735684	G	A	8186.77	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:407,413:0.50:820
chr7	1026520	rs62433130	C	T	1958.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:108,92:0.46:200
chr7	1040037	.	GGACGTGCCTGCCCCGCCGTGCACAGACCTCAGCCCCCAGGA	G	7717.73	.	AC=2;AF=1.00;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	1062527	rs3735686	G	A	19086.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.74;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr7	1062527	.	GC	AC,AT	2834	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=227,110;NR=252,116;PP=2834,2793;QD=20;SC=GCTACAAAGCGCGGCGACGTC;SbPval=0.51;Source=Platypus;TC=483;TCF=227;TCR=256;TR=479,226;WE=1062536;WS=1062517;set=Platypus	GT:AF:DP	0/1:0.99:483
chr7	1062528	rs1057561	C	T	5431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.563;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:265,264:0.50:529
chr7	1068186	rs115018039	G	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	1094819	rs4720335	G	A	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,48:0.48:101
chr7	1097952	rs6953080	C	T	8840.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:368,416:0.53:784
chr7	1131356	rs3802141	T	C	20449.77	.	AC=2;AF=1.00;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	1/1:1,755:1.00:756
chr7	1131394	rs34497267	G	A	12008.77	.	AC=1;AF=0.500;AN=2;DB;DP=1063;set=Intersection	GT:AD:AF:DP	0/1:491,571:0.54:1062
chr7	1131411	rs11544331	C	T	10601.77	.	AC=1;AF=0.500;AN=2;DB;DP=1136;set=Intersection	GT:AD:AF:DP	0/1:613,522:0.46:1135
chr7	1132153	rs3808352	G	A	7236.77	.	AC=1;AF=0.500;AN=2;DB;DP=630;set=Intersection	GT:AD:AF:DP	0/1:302,327:0.52:629
chr7	1132671	rs4266553	C	G	9241.77	.	AC=1;AF=0.500;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	0/1:558,454:0.45:1012
chr7	1132748	rs10235056	G	A	11940.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:391,552:0.59:943
chr7	1132961	rs180911837	C	A	2008.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:107,91:0.46:198
chr7	1133171	rs3808354	G	T	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:187,159:0.46:346
chr7	1133305	rs1133043	C	G	10445.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	1167117	.	T	TA	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.769;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr7	1197994	rs12702435	T	C	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	1481919	rs4236408	C	A	22893.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr7	1482009	rs61744261	G	C	10131.77	.	AC=1;AF=0.500;AN=2;DB;DP=981;set=Intersection	GT:AD:AF:DP	0/1:494,484:0.49:978
chr7	1482134	rs4457225	C	G	4290.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:238,203:0.46:441
chr7	1484572	rs10435184	A	G	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	1498789	.	GA	G	2566.73	.	AC=1;AF=0.500;AN=2;DP=180;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr7	1511319	rs116970885	G	T	7740.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:441,385:0.47:826
chr7	1516129	.	G	GCCTCTCCCGGATGGGCCACCC	7272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.451;ClippingRankSum=0.000;DP=1008;ExcessHet=3.0103;FS=4.918;MLEAC=1;MLEAF=0.500;MQ=61.23;MQRankSum=11.964;QD=16.57;ReadPosRankSum=0.015;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:215,224:0.51:439
chr7	1517700	rs10265526	A	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:36,44:0.55:80
chr7	1518336	rs11977356	G	A	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr7	1519011	rs56975547	G	A	2674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.620;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.24;ReadPosRankSum=0.472;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:77,125:0.62:202
chr7	1519361	rs9692164	A	G	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.217;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=0.160;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:21,45:0.68:66
chr7	1519892	rs4546558	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr7	1519946	rs7783971	A	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr7	1520077	rs187845066	T	C	2104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=2.839;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:103,105:0.50:208
chr7	1522157	rs10227674	T	C	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:114,143:0.56:257
chr7	1522175	rs10224038	A	G	12365.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr7	1523559	rs10235180	T	C	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr7	1523956	rs11972722	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	1526181	rs6969991	G	A	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:74,76:0.51:150
chr7	1526300	rs117508585	G	A	5048.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:222,257:0.54:479
chr7	1526456	rs62435333	C	T	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:105,105:0.50:210
chr7	1527687	rs10279407	C	T	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:61,66:0.52:127
chr7	1527735	rs10267772	G	A	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr7	1528947	.	T	TCCCGGGCCCGCCGAGGGGACGTGCGCACTCACTTCAGGCCCTGCTCCCAGC	12067.73	.	AC=2;AF=1.00;AN=2;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.18;QD=90.06;SOR=2.099;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	1529201	rs4425657	G	A	5976.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:327,294:0.47:621
chr7	1529427	rs4380839	C	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr7	1532631	rs10229645	G	A	4336.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:238,215:0.47:453
chr7	1533513	rs2251226	A	G	4178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.642;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:230,204:0.47:434
chr7	1533556	rs2251231	T	C	5400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.67;ReadPosRankSum=0.208;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:173,151:0.47:324
chr7	1533566	rs2251232	A	G	5222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=0.086;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:164,138:0.46:302
chr7	1534425	rs752791	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:110,97:0.47:207
chr7	1534593	rs752792	C	A	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:137,104:0.43:241
chr7	1535051	rs892530	A	G	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:62,43:0.41:105
chr7	1536717	rs3735660	T	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:68,74:0.52:142
chr7	1538539	rs57092311	A	G	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr7	1538595	rs2289034	C	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=1.412;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chr7	1538614	rs2289035	G	A	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,27:0.47:58
chr7	1538877	rs750005	A	G	8363.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:312,399:0.56:711
chr7	1539799	rs2304357	C	T	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:181,185:0.51:366
chr7	1540049	rs2304358	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:44,54:0.55:98
chr7	1542697	rs3752714	G	A	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:217,205:0.49:422
chr7	1542814	rs3752715	T	C	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:160,146:0.48:306
chr7	1543476	rs145605530	T	TCCCCAAAGAC	3258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=876;ExcessHet=3.0103;FS=58.664;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.483;QD=4.68;ReadPosRankSum=1.083;SOR=3.635;set=HC	GT:AD:AF:DP	0/1:504,193:0.28:697
chr7	1543981	rs1369011	C	A	5213.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:259,257:0.50:516
chr7	1544128	rs2278460	G	T	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:126,124:0.50:250
chr7	1574403	rs4720833	A	G	21865.77	.	AC=2;AF=1.00;AN=2;DB;DP=835;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,832:1.00:832
chr7	1574562	rs4720834	T	C	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	1586653	rs112463195	A	AGCC	3019.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:3,116:0.97:119
chr7	1586662	rs3779607	T	C	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	1586866	rs3824072	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	1588391	rs3814481	A	G	12510.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr7	1588549	rs3814482	G	A	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr7	1588768	rs1124871	G	A	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	1588912	rs3890492	C	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	1589056	rs4294092	G	A	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	1589083	rs1865348	G	A	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	1589124	rs184301499	T	C	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.032;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:136,94:0.41:230
chr7	1589417	rs10237660	T	G	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,208:0.99:210
chr7	1590368	rs6463921	A	G	8814.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=1.369;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	1590376	rs2304360	T	C	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=1.289;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	1590443	rs2304361	T	C	12688.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr7	1595039	.	C	A	1393.77	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:67,67:0.50:134
chr7	1595068	rs17852421	G	A	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:81,63:0.44:144
chr7	1627632	rs7800178	T	C	19605.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr7	1657844	rs10225166	A	C	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=0.119;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:57,52:0.48:109
chr7	1657923	rs12702990	T	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr7	1733102	rs4720922	G	T	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:140,161:0.53:301
chr7	1733182	rs79496824	C	T	9160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.354;ClippingRankSum=0.000;DB;DP=521;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.68;ReadPosRankSum=0.834;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:279,239:0.46:518
chr7	1733192	rs56130225	C	T	9417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=0.563;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:297,256:0.46:553
chr7	1733474	rs117250982	G	A	4693.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:202,212:0.51:414
chr7	1785738	rs61236605	G	A	6193.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:272,288:0.51:560
chr7	1855531	rs7680	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr7	1878377	rs3889573	A	G	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:163,132:0.45:295
chr7	1886805	rs11762803	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr7	1887037	rs73046334	T	C	4463.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:219,214:0.49:433
chr7	1888294	rs4719320	C	G	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:78,69:0.47:147
chr7	1888683	rs66991912	TACACACACAC	T	3265.73	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:109,99:0.48:208
chr7	1914059	rs55934553	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	1914350	rs60238952	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr7	1976263	rs2280552	C	T	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,46:0.49:93
chr7	1976635	rs2280549	G	A	4619.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:189,204:0.52:393
chr7	2041638	rs1107591	G	A	6088.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:275,295:0.52:570
chr7	2041887	rs4721296	A	C	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	2054314	rs142140779	CG	C	3253.73	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:121,124:0.51:245
chr7	2119174	rs7805774	C	T	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	2257612	rs6951493	G	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:93,72:0.44:165
chr7	2258899	rs1639916	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr7	2260715	rs1639917	G	T	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,47:0.51:93
chr7	2269552	rs1637728	G	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	2278577	rs59385624	AG	A	444.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr7	2278638	rs60173050	AT	A	549.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.517;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.96;ReadPosRankSum=0.336;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:7,22:0.76:29
chr7	2278640	.	ATATATATATATATATATATATAT	A	742.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=5.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-0.172;SOR=1.617;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr7	2278642	.	ATATATATATATATATATATAT	A	52.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.506;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr7	2279482	rs11984133	A	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr7	2279851	rs6962067	T	C	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:88,132:0.60:220
chr7	2281083	rs11382094	A	AT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=2.345;SOR=1.157;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr7	2290314	rs12699806	C	T	1019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.445;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=53.09;MQRankSum=0.496;QD=20.00;ReadPosRankSum=-0.646;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr7	2290317	rs60298419	T	G	1097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.045;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=53.23;MQRankSum=0.381;QD=21.11;ReadPosRankSum=-0.272;SOR=1.486;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr7	2290319	rs373496719	TC	T	1053.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.329;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.362;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=0.383;QD=19.51;ReadPosRankSum=-0.115;SOR=1.466;set=HC	GT:AD:AF:DP	0/1:26,28:0.52:54
chr7	2290328	rs10230814	C	T	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.778;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=6.110;MLEAC=1;MLEAF=0.500;MQ=54.55;MQRankSum=-0.410;QD=17.91;ReadPosRankSum=1.352;SOR=1.604;set=HC	GT:AD:AF:DP	0/1:32,29:0.48:61
chr7	2290336	rs10249180	T	G	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=5.810;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-0.130;QD=17.78;ReadPosRankSum=1.276;SOR=1.666;set=HC	GT:AD:AF:DP	0/1:34,34:0.50:68
chr7	2290372	rs10230822	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:60,54:0.47:114
chr7	2292881	rs3075440	C	CTG	13663.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	2296493	rs2302070	A	G	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	2296696	rs2302071	C	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,35:0.43:81
chr7	2296722	rs3815313	A	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr7	2297006	rs6888	A	G	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr7	2303109	rs2286207	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:46,65:0.59:111
chr7	2303986	rs2286206	T	C	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	2304191	rs2286205	A	C	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	2309355	rs6947645	G	A	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:67,67:0.50:134
chr7	2314652	rs878534	G	A	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,40:0.40:101
chr7	2315008	rs2398667	G	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	2349470	rs10479970	T	C	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:171,164:0.49:335
chr7	2349608	rs7805462	G	A	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr7	2394746	rs9690787	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr7	2400306	rs953770	T	C	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.294;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=4.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-0.197;SOR=0.453;set=HC	GT:AD:AF:DP	0/1:99,114:0.54:213
chr7	2402633	rs148466865	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr7	2403894	.	C	CA	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.000;QD=1.60;ReadPosRankSum=3.678;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:100,32:0.24:132
chr7	2405885	rs2286204	C	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	2406737	rs60382761	CA	C	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.959;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.091;QD=7.21;ReadPosRankSum=0.751;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:33,67:0.67:100
chr7	2409035	rs2301944	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	2412493	rs1548595	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr7	2414142	rs886632	A	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	2414365	rs884565	A	G	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	2416822	rs2240347	A	G	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:151,139:0.48:290
chr7	2418116	rs6461350	T	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr7	2418645	rs6461351	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	2434522	rs1978169	G	A	10695.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.90;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,413:1.00:413
chr7	2434594	.	ATT	A	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=6.709;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.335;QD=14.16;ReadPosRankSum=1.058;SOR=2.353;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr7	2480040	rs144675889	ATG	A	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.761;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.193;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:69,10:0.13:79
chr7	2489311	rs11773261	C	G	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:133,104:0.44:237
chr7	2489335	rs111677862	CGTGTGTGCACCT	C	3935.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:176,108:0.38:284
chr7	2489382	rs11763749	A	G	2872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=4.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.47;ReadPosRankSum=-1.224;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:188,151:0.45:339
chr7	2515382	rs5881927	G	GC	16701.73	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	2517473	rs11767162	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr7	2552986	rs286560	A	C	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:232,198:0.46:430
chr7	2557266	rs755179	T	C	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:115,92:0.44:207
chr7	2565268	rs893239	C	A	4684.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:230,219:0.49:449
chr7	2577691	rs1043294	C	G	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:71,73:0.51:144
chr7	2577781	rs1043291	T	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:118,129:0.52:247
chr7	2578237	rs4719552	TC	CT	9337.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;JOINED;set=Intersection	GT:AD:AF:DP	0/1:230,240:0.51:470
chr7	2578434	rs4721763	G	T	4444.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:228,215:0.49:443
chr7	2578455	rs4721764	G	A	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:190,176:0.48:366
chr7	2580914	rs62442586	C	T	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:213,182:0.46:395
chr7	2581594	rs34947605	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr7	2581994	rs3735104	T	C	4498.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:193,221:0.53:414
chr7	2582153	rs138295649	C	CCCCCAGCCTCCCGGGTGT	14377.73	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr7	2582233	rs3735106	A	G	9994.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:411,456:0.53:867
chr7	2582381	rs61673178	T	A	15235.77	.	AC=1;AF=0.500;AN=2;DB;DP=1615;set=Intersection	GT:AD:AF:DP	0/1:825,784:0.49:1609
chr7	2582584	rs34108550	G	A	7801.77	.	AC=1;AF=0.500;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	0/1:390,373:0.49:763
chr7	2583165	rs13240450	G	A	4940.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:190,229:0.55:419
chr7	2583328	rs61753095	C	T	5785.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:300,273:0.48:573
chr7	2584523	rs34720091	T	C	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr7	2587122	rs2164688	T	C	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr7	2598757	rs6963930	T	C	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr7	2598908	rs34580685	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr7	2604767	rs71550361	AGT	A	2477.73	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:104,99:0.49:203
chr7	2604816	rs35243077	C	T	3022.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:167,153:0.48:320
chr7	2611654	rs6953966	G	T	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:62,46:0.43:108
chr7	2611878	rs2917751	T	C	22036.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	1/1:0,846:1.00:846
chr7	2612335	rs6945441	T	C	4729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-2.339;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:256,246:0.49:502
chr7	2613008	rs62442625	A	G	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr7	2613042	rs2304540	G	C	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	2613062	rs61739566	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:88,56:0.39:144
chr7	2618070	rs3214664	C	CA	9555.73	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:381,315:0.45:696
chr7	2619334	rs68086038	GGT	G	2866.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.437;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:122,125:0.51:247
chr7	2619363	rs2917739	G	C,GTGTC	8782.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=4.199;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.37;ReadPosRankSum=1.228;SOR=1.080;set=HC	GT:AD:AF:DP	1/2:1,163,71:0.69,0.30:235
chr7	2619416	rs117437253	T	C	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr7	2621567	rs7798469	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	2622133	rs62439479	G	A	2022.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:86,93:0.52:179
chr7	2623351	rs13242369	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:55,59:0.52:114
chr7	2623801	rs73033665	G	T	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:230,192:0.45:422
chr7	2626038	rs3217437	CCAGGGAATGG	C	1059.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	2627294	rs56412903	C	T	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr7	2627310	rs2917733	T	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	2627578	rs150431779	CAG	C	1703.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr7	2632477	rs2917730	A	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	2632857	rs62439484	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr7	2636689	rs12700146	C	T	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:92,102:0.53:194
chr7	2638347	rs12700147	C	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr7	2640985	rs4506100	G	C	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=0.767;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:55,32:0.37:87
chr7	2647048	rs12700160	C	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=1.173;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr7	2672065	rs11976974	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	2686761	rs3801079	G	C	11561.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr7	2689472	rs3801077	A	C	18930.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr7	2691610	rs13225657	G	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr7	2691736	rs35868808	A	G	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:175,151:0.46:326
chr7	2692806	rs6461505	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr7	2699524	rs139527284	ACT	A	1768.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.959;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.746;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:385,121:0.24:506
chr7	2699687	rs56409742	C	CG	21278.73	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr7	2749565	rs13224990	G	A	830.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	2752152	rs798565	G	A	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:141,117:0.45:258
chr7	2752487	rs7776970	G	A	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:146,171:0.54:317
chr7	2752506	rs74388321	G	A	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:125,129:0.51:254
chr7	2773035	rs34004158	C	CAT	6012.73	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:158,158:0.50:316
chr7	2802522	rs798488	T	C	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:81,74:0.48:155
chr7	2834869	rs2533886	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr7	2854010	rs2644275	G	A	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.549;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.813;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:42,48:0.53:90
chr7	2946461	rs1124581	T	C	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr7	2954801	rs1182157	T	C	6149.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	2962753	rs2527509	G	A	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	2966445	rs1182136	T	G	12947.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:7,504:0.99:511
chr7	2968195	rs117314280	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr7	2968361	rs2527506	G	A	11919.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr7	2968486	rs1183431	G	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	2971977	rs5881948	T	TG	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	2985361	rs3839716	GAC	G	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr7	3179968	rs7779230	T	G	18567.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr7	3179973	rs7791857	G	C	18272.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.01;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,406:1.00:406
chr7	3179991	rs7779245	T	C	9162.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr7	3180550	rs11374295	C	CT	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=1.553;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:21,47:0.69:68
chr7	3180657	rs6964682	C	T	9270.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	3188513	rs7810868	C	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	3188549	rs10257432	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	3188576	rs10257447	T	C	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	3188712	rs10254519	A	C	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	3188738	rs34925290	G	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	3197867	rs4634530	T	C	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:56,43:0.43:99
chr7	3205581	rs7782623	C	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr7	3205635	rs7801306	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr7	3205705	rs10951088	T	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.693;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:56,26:0.32:82
chr7	3205763	rs10951089	A	C	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-2.504;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:77,41:0.35:118
chr7	3341390	rs10228086	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.86;ReadPosRankSum=2.655;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr7	4116507	rs13223359	C	G	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr7	4116665	rs11978101	G	A	36141.77	.	AC=2;AF=1.00;AN=2;DB;DP=1341;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,1335:1.00:1335
chr7	4166959	rs77297762	G	A	2771.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:171,137:0.44:308
chr7	4171922	rs76692704	C	G	14689.77	.	AC=1;AF=0.500;AN=2;DB;DP=1493;set=Intersection	GT:AD:AF:DP	0/1:761,727:0.49:1488
chr7	4172006	rs13224870	C	T	9011.77	.	AC=1;AF=0.500;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	0/1:459,443:0.49:902
chr7	4185592	rs608271	A	G	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:128,85:0.40:213
chr7	4189075	rs659182	G	C	7156.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:446,356:0.44:802
chr7	4189123	rs4720177	G	A	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	0/1:251,208:0.45:459
chr7	4197914	rs141187770	G	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr7	4213975	rs671694	A	G	2474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=1.535;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:123,124:0.50:247
chr7	4217969	rs649494	T	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr7	4249626	rs56231006	G	T	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:132,107:0.45:239
chr7	4259708	rs11978573	C	T	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:295,245:0.45:540
chr7	4259953	rs13224192	G	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr7	4261099	rs35146190	C	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr7	4266887	rs142581792	CT	C	411.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	4266952	rs74496648	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr7	4267072	rs597636	T	A	3087.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	4272845	rs2880459	G	A	6429.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:359,320:0.47:679
chr7	4304727	rs10270413	A	G	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:134,142:0.51:276
chr7	4308362	rs8514	C	T	4073.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:198,202:0.51:400
chr7	4490854	rs314605	C	T	6788.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	4490934	rs442775	AC	GT	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	4714912	rs28631893	C	T	5298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-1.288;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:376,271:0.42:647
chr7	4780514	rs3087749	G	T	30340.77	.	AC=2;AF=1.00;AN=2;DB;DP=1167;set=Intersection	GT:AD:AF:DP	1/1:1,1162:1.00:1163
chr7	4802029	rs6976790	T	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	4827096	rs112887769	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr7	4839163	rs3736241	A	C	7987.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:354,373:0.51:727
chr7	4841470	rs414035	T	C	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	4871879	rs3830494	C	CAT	6870.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:171,180:0.51:351
chr7	4874420	rs2292498	G	C	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	4876057	rs3763384	C	T	5365.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	4900095	rs1553960	A	G	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:88,105:0.54:193
chr7	4900341	rs17135247	G	A	8822.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:400,413:0.51:813
chr7	4901385	rs3750009	A	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:31,26:0.46:57
chr7	4901465	rs3833677	G	GCACGTCCCCCACCACCGCGACCTT	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=34.07;ReadPosRankSum=1.097;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr7	4946973	rs10951715	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chr7	4959789	rs932060	G	A	3565.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:78,93:0.54:171
chr7	4959807	rs932061	G	A	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:108,142:0.57:250
chr7	5015884	rs6978131	G	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	5023202	rs10156118	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	5023420	rs6965043	A	G	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=6.882;MLEAC=1;MLEAF=0.500;MQ=52.60;MQRankSum=-0.928;QD=9.75;ReadPosRankSum=0.788;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:100,101:0.50:201
chr7	5023453	.	T	TTTGTTG	2561.73	.	AC=1;AF=0.500;AN=2;DP=190;set=Intersection	GT:AD:AF:DP	0/1:71,75:0.51:146
chr7	5026128	rs10274596	A	G	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=45.65;MQRankSum=-1.584;QD=3.34;ReadPosRankSum=-0.823;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	5026170	rs57714855	TA	T	478.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=42.85;MQRankSum=2.726;QD=12.60;ReadPosRankSum=-1.541;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,30:0.79:38
chr7	5026171	rs10274621	A	T	30.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.668;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=42.85;MQRankSum=-2.688;QD=0.81;ReadPosRankSum=1.559;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr7	5105133	rs12334144	C	T	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:139,140:0.50:279
chr7	5112108	rs6862	G	T	4983.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:268,247:0.48:515
chr7	5112554	rs1130329	A	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr7	5161512	rs117992329	G	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:82,50:0.38:132
chr7	5161640	rs62441986	G	C	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:113,102:0.47:215
chr7	5161858	rs11289360	GA	G	910.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-1.052;QD=5.55;ReadPosRankSum=1.479;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:92,72:0.44:164
chr7	5254218	rs41280678	G	A	4296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=2.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=1.564;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:219,200:0.48:419
chr7	5254227	rs4587243	C	G	16096.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr7	5257490	rs7791896	T	C	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	5262151	rs62441068	C	T	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr7	5262385	rs4720537	G	A	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:149,144:0.49:293
chr7	5269424	rs7785898	A	C	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	5331307	rs12667188	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;MQ=43.77;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	5334469	rs4724524	G	T	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:156,131:0.46:287
chr7	5334472	rs10623123	C	CCT	3334.73	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:164,119:0.42:283
chr7	5334582	rs59119551	C	T	2504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.743;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:91,123:0.57:214
chr7	5336855	rs137903684	TCCCTTCTCTGTC	T	2711.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:108,73:0.40:181
chr7	5336885	rs13244318	C	T	2800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.643;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.657;QD=16.10;ReadPosRankSum=-0.313;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:100,74:0.43:174
chr7	5338693	rs11761173	C	T	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=0.209;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:59,63:0.52:122
chr7	5347295	rs7794563	A	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	5352659	rs138591330	G	T	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.008;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=4.919;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=-1.681;QD=9.17;ReadPosRankSum=0.578;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:107,95:0.47:202
chr7	5352665	.	T	TGAGGAG	2820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=6.033;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.628;QD=16.99;ReadPosRankSum=2.810;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:78,88:0.53:166
chr7	5352949	rs76882791	G	C	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr7	5353253	rs140781391	G	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,23:0.45:51
chr7	5353344	rs12532973	G	A	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-2.305;QD=9.90;ReadPosRankSum=1.408;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr7	5353600	rs11292393	GT	G	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-0.844;QD=6.59;ReadPosRankSum=1.711;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr7	5359916	rs56056769	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr7	5364041	rs1056173	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr7	5372406	rs13238738	G	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:48,65:0.58:113
chr7	5396955	rs7805732	A	G	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,67:0.53:126
chr7	5401412	rs117910193	G	A	2255.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:102,111:0.52:213
chr7	5402606	rs4357206	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:67,46:0.41:113
chr7	5409937	rs58182076	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr7	5410425	rs12671708	G	C	8520.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:253,391:0.61:644
chr7	5415874	rs11766794	T	C	9246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.03;ReadPosRankSum=0.300;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:298,245:0.45:543
chr7	5415877	rs11769187	G	A	9283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=0.950;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:306,245:0.44:551
chr7	5427256	rs142955805	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:152,123:0.45:275
chr7	5427720	rs4724663	A	G	10630.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr7	5430283	rs67295626	G	A	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:31,48:0.61:79
chr7	5434135	rs4724668	A	G	1664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-1.869;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:82,81:0.50:163
chr7	5487458	rs4236392	T	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:93,104:0.53:197
chr7	5528883	rs4724701	G	A	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.182;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:63,53:0.46:116
chr7	5529758	rs28566736	G	A	4689.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:297,237:0.44:534
chr7	5529922	rs4077245	A	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr7	5530827	rs3801057	G	A	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:298,227:0.43:525
chr7	5540769	rs6953642	A	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:148,100:0.40:248
chr7	5541657	rs4724704	G	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:81,115:0.59:196
chr7	5567596	rs852424	C	T	6430.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:288,313:0.52:601
chr7	5568366	rs852423	A	G	5164.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:233,248:0.52:481
chr7	5569327	rs2908425	G	A	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:98,113:0.54:211
chr7	5751250	rs3735289	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	5760971	rs4720636	A	T	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	5779375	rs10233615	T	C	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	5800769	rs3857756	A	G	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	5920394	rs201796201	T	TA	465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-1.975;QD=7.76;ReadPosRankSum=1.106;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr7	5920405	.	AT	A	391	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=10;HapScore=4;MGOF=3;MMLQ=28;MQ=56.68;NF=19;NR=7;PP=391;QD=15.3846153846;SC=AAAAAAAAAAATAATCTAGAC;SbPval=0.65;Source=Platypus;TC=75;TCF=53;TCR=22;TR=26;WE=5920414;WS=5920384;set=Platypus	GT:AD:AF:DP	1/1:49,26:0.35:75
chr7	5920406	rs10235465	T	A	1656.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.119;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.04;MQRankSum=-0.846;QD=27.16;ReadPosRankSum=0.466;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:2,59:0.97:61
chr7	5922009	rs41280699	C	T	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr7	5923682	rs7798766	G	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr7	5923738	rs3890913	A	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr7	5938326	rs117593220	C	T	95.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.92;QD=19.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	5949830	rs11771500	C	T	3571.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:194,169:0.47:363
chr7	5958650	rs138701366	G	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.70;QD=25.99;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	5959485	rs200812052	G	A	3124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.856;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=11.950;MLEAC=1;MLEAF=0.500;MQ=47.63;MQRankSum=-4.567;QD=16.89;ReadPosRankSum=-2.998;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:48,137:0.74:185
chr7	5959661	rs199977794	C	T	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	5965258	rs201118476	T	C	5579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.354;MLEAC=1;MLEAF=0.500;MQ=47.00;MQRankSum=-7.315;QD=14.96;ReadPosRankSum=2.396;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:107,266:0.71:373
chr7	5965381	rs377528346	G	A	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.26;MQRankSum=-3.812;QD=8.18;ReadPosRankSum=-1.463;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr7	5965398	rs201553072	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.46;MQRankSum=-4.040;QD=8.05;ReadPosRankSum=0.685;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	5983012	rs150999559	A	G	3313.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.37;MQRankSum=0.897;QD=29.33;ReadPosRankSum=-0.479;SOR=0.269;set=HC	GT:AD:AF:DP	1/1:1,112:0.99:113
chr7	5983063	rs148485394	C	T	1801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.92;MQRankSum=-1.873;QD=12.34;ReadPosRankSum=-0.250;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:65,81:0.55:146
chr7	5983195	rs138475267	C	A	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	5983470	rs375510070	G	A	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.26;MQRankSum=-0.694;QD=9.76;ReadPosRankSum=-1.673;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr7	5983553	rs80120223	A	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.38;QD=30.92;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	5984580	rs199905813	C	T	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.82;MQRankSum=-1.187;QD=2.61;ReadPosRankSum=2.249;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr7	6022629	rs55954143	G	A	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.076;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=44.35;MQRankSum=0.078;QD=7.62;ReadPosRankSum=1.262;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr7	6026775	rs2228006	T	C	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:170,156:0.48:326
chr7	6031804	.	G	GT	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=2.166;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.78;ReadPosRankSum=0.783;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr7	6036980	rs1805319	G	C	2410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=-0.021;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:135,123:0.48:258
chr7	6037057	rs60794673	GA	G	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.024;QD=2.44;ReadPosRankSum=-0.354;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:88,46:0.34:134
chr7	6048556	rs3735295	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-0.435;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:26,31:0.54:57
chr7	6048973	rs1062372	C	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr7	6049209	rs2302335	C	T	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.11;ReadPosRankSum=1.667;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr7	6054987	rs6979676	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr7	6057777	.	C	CT	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.190;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:45,47:0.51:92
chr7	6064470	.	C	CT	431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=9.475;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.588;QD=5.46;ReadPosRankSum=1.783;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:39,40:0.51:79
chr7	6065914	rs10253000	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr7	6066057	rs34019419	G	GC	10598.73	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:269,311:0.54:580
chr7	6066461	rs2639	T	C	3904.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:299,208:0.41:507
chr7	6070856	rs10255418	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr7	6071277	rs4724770	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr7	6078376	rs2302331	A	C	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:142,98:0.41:240
chr7	6078468	rs2302330	C	A	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr7	6080853	rs34743814	GA	G	681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.926;QD=6.62;ReadPosRankSum=-1.172;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:50,53:0.51:103
chr7	6084310	rs511969	G	T	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:154,142:0.48:296
chr7	6088533	rs525090	C	T	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	6089856	rs149665123	AT	A	144.06	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr7	6097868	rs559842	A	C	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-1.828;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:29,31:0.52:60
chr7	6097877	.	C	CA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.260;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:36,14:0.28:50
chr7	6151400	.	A	ATT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.423;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr7	6175633	rs11322306	CT	C	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=9.506;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.135;QD=4.20;ReadPosRankSum=-0.247;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:47,48:0.51:95
chr7	6178931	rs6973832	G	A	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,58:0.54:108
chr7	6180680	rs10216107	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr7	6183682	rs10255598	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	6185194	rs10225119	A	G	3838.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:276,198:0.42:474
chr7	6185356	rs6944071	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr7	6185968	.	TA	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.064;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr7	6189717	rs61753118	G	A	6124.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:363,297:0.45:660
chr7	6189750	rs61750868	C	T	7871.77	.	AC=1;AF=0.500;AN=2;DB;DP=799;set=Intersection	GT:AD:AF:DP	0/1:420,378:0.47:798
chr7	6189780	rs3764814	T	C	8901.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:444,424:0.49:868
chr7	6193464	rs61732616	T	G	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:72,73:0.50:145
chr7	6193521	rs61729726	G	C	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:120,160:0.57:280
chr7	6194274	rs6463529	T	C	4981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.381;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:313,260:0.45:573
chr7	6194876	rs6964819	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:51,54:0.51:105
chr7	6197045	rs10255918	T	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chr7	6199265	rs10246266	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=1.969;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr7	6204999	rs2301910	A	C	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:313,236:0.43:549
chr7	6213396	rs17136059	A	G	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:104,92:0.47:196
chr7	6230059	.	GT	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-1.153;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr7	6230269	rs12669486	T	C	2906.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:172,144:0.46:316
chr7	6370144	rs1043965	G	A	6606.77	.	AC=1;AF=0.500;AN=2;DB;DP=753;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:431,318:0.42:749
chr7	6370194	rs6952125	C	T	8796.77	.	AC=1;AF=0.500;AN=2;DB;DP=964;set=Intersection	GT:AD:AF:DP	0/1:522,439:0.46:961
chr7	6370305	rs3750039	C	G	6713.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:341,315:0.48:656
chr7	6370406	rs3750040	C	T	3899.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:214,175:0.45:389
chr7	6426941	rs702483	C	T	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	6431690	rs836478	C	T	26549.77	.	AC=2;AF=1.00;AN=2;DB;DP=1027;set=Intersection	GT:AD:AF:DP	1/1:1,1021:1.00:1022
chr7	6441799	rs836551	G	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	6449496	rs2303361	T	C	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:291,259:0.47:550
chr7	6456347	rs1055428	G	T	6773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=-0.422;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:308,320:0.51:628
chr7	6456669	rs836508	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	6461310	rs79949326	C	T	3057.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:175,155:0.47:330
chr7	6461348	rs836514	G	A	5836.77	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:256,287:0.53:543
chr7	6461534	rs2288153	C	T	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:196,131:0.40:327
chr7	6465441	rs2272157	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr7	6472278	rs149304682	G	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.697;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr7	6472290	.	TA	T	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=1.302;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr7	6472354	rs836532	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-1.485;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:36,37:0.51:73
chr7	6476237	rs3750038	C	T	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:94,78:0.45:172
chr7	6485556	rs73342964	G	T	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:164,157:0.49:321
chr7	6487293	rs3750037	G	C	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:99,92:0.48:191
chr7	6505901	rs2230263	T	C	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	6513779	rs17777087	T	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr7	6522129	rs55841143	G	A	5857.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:297,285:0.49:582
chr7	6537566	rs5882098	CA	C	6228.73	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:257,196:0.43:453
chr7	6537821	rs6463568	G	C	11248.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr7	6537913	rs79970150	A	G	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr7	6541347	rs7791451	C	T	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr7	6544630	rs78696194	G	A	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:98,124:0.56:222
chr7	6545335	rs9640023	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr7	6545619	rs11980487	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	6547565	rs139396652	C	G	2918.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:169,149:0.47:318
chr7	6549867	rs74487555	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chr7	6550403	rs34411495	A	G	5782.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:312,297:0.49:609
chr7	6550494	rs12702520	G	A	24685.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,934:1.00:934
chr7	6560531	rs10247242	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr7	6561670	rs79702317	G	A	3042.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:200,152:0.43:352
chr7	6561773	rs116931289	G	C	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr7	6566322	rs2881723	T	G	2826.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:203,143:0.41:346
chr7	6570618	rs11772639	G	C	4229.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:172,198:0.54:370
chr7	6590670	rs9690195	C	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	6590693	rs6463571	G	A	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	6591041	rs4724818	C	G	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:143,152:0.52:295
chr7	6621277	rs11559146	G	A	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:88,90:0.51:178
chr7	6628242	rs3088114	T	C	3421.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:148,164:0.53:312
chr7	6647738	rs4416743	T	C	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:105,103:0.50:208
chr7	6656830	rs2243563	G	A	7767.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr7	6656897	rs1806552	A	G	7051.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr7	6660790	rs940873	G	A	10954.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	6661256	rs11971880	C	G	5334.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:237,232:0.49:469
chr7	6662086	rs9770042	G	C	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:109,133:0.55:242
chr7	6713936	rs7798061	C	T	8886.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:282,232:0.45:514
chr7	6713940	rs58381208	CAG	C	8818.73	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:296,235:0.44:531
chr7	6713985	rs2243620	A	G	16726.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr7	6714423	rs35568522	CAA	C	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.100;QD=7.70;ReadPosRankSum=-1.059;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	6714961	rs377679285	CT	C	497.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.212;QD=6.07;ReadPosRankSum=0.508;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:34,48:0.59:82
chr7	6715127	rs7357087	C	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr7	6715548	rs74362890	A	G	6077.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:291,303:0.51:594
chr7	6716143	rs118033155	T	A	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr7	6732315	rs61227179	A	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:134,122:0.48:256
chr7	6744957	rs7798471	T	C	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:117,101:0.46:218
chr7	6746205	rs55869731	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr7	6785956	rs28694792	A	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr7	6786731	rs111706670	C	T	5661.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:112,264:0.70:376
chr7	6790900	rs200453156	T	C	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.95;MQRankSum=-0.770;QD=15.51;ReadPosRankSum=1.382;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	6791040	rs199677566	G	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.381;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.219;MLEAC=1;MLEAF=0.500;MQ=45.73;MQRankSum=-1.014;QD=3.82;ReadPosRankSum=0.803;SOR=1.413;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr7	6798598	.	A	T	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.372;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.09;MQRankSum=-0.573;QD=2.20;ReadPosRankSum=-0.770;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr7	6798600	rs199717429	A	T	376.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.002;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=43.09;MQRankSum=0.061;QD=11.77;ReadPosRankSum=-0.163;SOR=2.012;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr7	6798601	.	T	TA	40.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=43.09;MQRankSum=-0.754;QD=1.20;ReadPosRankSum=-1.034;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr7	6806605	rs148761894	G	A	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr7	6839053	.	ATTT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.07;MQRankSum=-2.988;QD=1.60;ReadPosRankSum=0.201;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	6844574	rs75680229	C	G	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.478;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=47.89;MQRankSum=-5.618;QD=3.27;ReadPosRankSum=0.531;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:446,153:0.26:599
chr7	6845516	rs144852517	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.770;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-6.220;QD=2.40;ReadPosRankSum=0.907;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr7	6845594	rs202001623	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.757;MLEAC=1;MLEAF=0.500;MQ=46.78;MQRankSum=-4.102;QD=3.19;ReadPosRankSum=1.986;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:105,34:0.24:139
chr7	6845671	rs200484966	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.95;MQRankSum=0.643;QD=3.40;ReadPosRankSum=-0.633;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr7	6854272	rs11769113	A	T	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	6854506	rs138393587	C	T	8670.77	.	AC=1;AF=0.500;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	0/1:475,432:0.48:907
chr7	6863146	rs67376408	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.560;QD=1.45;ReadPosRankSum=-0.771;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	7136061	rs35367486	G	GA	3268.73	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:167,204:0.55:371
chr7	7277807	rs3807862	G	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	7278447	rs61744815	T	A	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,43:0.54:79
chr7	7398457	rs2348042	T	G	9715.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr7	7400239	rs7786515	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	7415217	rs1294651	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	7421019	rs1294626	C	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	7421310	rs1294627	A	G	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	7477250	rs5882126	T	TA	458.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	7480376	rs33937466	C	CA	14303.73	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr7	7483083	rs10234554	C	T	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	7484284	rs76456375	C	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr7	7491873	rs4720735	AG	CT	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	7493122	rs17519199	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr7	7493244	rs17459676	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	7495863	rs75544134	A	G	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr7	7528880	rs12671912	G	A	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr7	7528951	rs6463696	C	T	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	7557297	rs1016028	T	C	7676.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	7557618	.	CAA	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.281;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr7	7571094	rs7804532	G	C	10655.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr7	7622696	rs4720741	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	7627994	rs6463702	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	7628275	rs7801367	C	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	7645535	rs10276434	A	G	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	7645806	rs2286209	A	G	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	7646493	rs140136043	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr7	7646651	rs7806046	G	T	7800.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr7	7646687	rs4222	A	G	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	7712941	rs10527750	TAGCAGCAGCAGC	TAGC,T	9540.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=352;set=Intersection	GT:AF:DP	1/1:0.99:236
chr7	7841524	rs6463722	G	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr7	7841561	rs2348558	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	7916817	rs73043329	A	G	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.19;SOR=6.316;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	7916824	rs73043332	A	T	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.21;SOR=5.018;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	8008970	rs7786263	C	G	10209.77	.	AC=1;AF=0.500;AN=2;DB;DP=1081;set=Intersection	GT:AD:AF:DP	0/1:552,525:0.49:1077
chr7	8125964	rs929509	C	T	6728.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:413,325:0.44:738
chr7	8126194	rs12847	A	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr7	8132252	rs4725069	T	C	3094.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:131,151:0.54:282
chr7	8181555	rs80350640	C	CCA	26013.73	.	AC=1;AF=0.500;AN=2;DB;DP=1633;set=Intersection	GT:AD:AF:DP	0/1:756,795:0.51:1551
chr7	8196529	rs10282493	A	T	19400.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=26.72;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,726:1.00:726
chr7	8196567	rs200840693	AAAAAAAAAAAAAAAAAAG	A	3958.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=2.506;MLEAC=1;MLEAF=0.500;MQ=62.06;MQRankSum=0.902;QD=10.97;ReadPosRankSum=2.426;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:110,251:0.70:361
chr7	8267235	rs34695487	C	CT	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.266;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chr7	8475147	rs6949787	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	9765716	.	A	C	30	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=2;MGOF=1;MMLQ=23;MQ=52.19;NF=3;NR=0;PP=30;QD=21.5904041824;SC=TGGCCGGGCGAGGAGCGGGGC;SbPval=1.0;Source=Platypus;TC=6;TCF=6;TCR=0;TR=3;WE=9765724;WS=9765706;set=Platypus	GT:AD:AF:DP	0/1:3,3:0.50:6
chr7	10973362	rs7789764	C	T	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	11022230	rs218966	A	G	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.521;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	11022564	rs218965	G	A	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	11078283	.	C	CA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=7.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=1.693;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr7	11416378	rs2189351	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr7	11418931	rs12670599	T	C	4031.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:193,200:0.51:393
chr7	11419378	rs2107162	T	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,97:0.51:190
chr7	11441358	rs10950347	A	T	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr7	11441700	rs1859225	G	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr7	11446902	rs6956916	T	G	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:126,132:0.51:258
chr7	11447159	rs6975407	G	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr7	11452204	rs2301743	C	G	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr7	11464297	rs1859226	T	C	3789.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:144,177:0.55:321
chr7	11580903	rs2074604	A	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.668;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=1.374;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:38,34:0.47:72
chr7	11581121	rs47	T	C	9655.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:199,263:0.57:462
chr7	11581134	rs2074603	T	C	9082.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:199,235:0.54:434
chr7	11676694	rs2074597	C	A	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:39,48:0.55:87
chr7	12255434	rs6460901	C	T	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=0.516;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:64,52:0.45:116
chr7	12255511	rs6460902	G	A	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr7	12257938	rs6415232	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr7	12263725	rs17165746	T	A	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr7	12263799	rs11509137	TG	CA	6390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=5.827;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.02;ReadPosRankSum=0.134;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:167,169:0.50:336
chr7	12263971	rs147889591	G	A	4342.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:198,209:0.51:407
chr7	12269260	rs3839691	A	ATGTT	405.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr7	12269417	rs3173615	C	G	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.809;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=1.633;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:75,58:0.44:133
chr7	12270565	rs3214372	A	AT	147.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr7	12270625	rs2302635	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	12270770	rs2302634	T	A	2353.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr7	12270791	rs73677558	T	C	2372.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:53,61:0.54:114
chr7	12270815	rs2302633	C	T	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:46,51:0.53:97
chr7	12270900	rs16877361	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr7	12271452	rs3800842	A	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:165,130:0.44:295
chr7	12370657	rs2253353	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	12370702	rs3217131	AT	A	136.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr7	12370794	rs1059002	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,47:0.52:91
chr7	12370952	rs6954265	C	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:36,56:0.61:92
chr7	12371001	rs6954555	G	A	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr7	12371019	rs3815534	A	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr7	12372999	rs6460928	T	G	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr7	12373082	rs6460929	C	T	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:105,131:0.56:236
chr7	12373353	rs6460930	TG	CA	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;JOINED;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr7	12375667	rs35608044	G	GA	1714.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr7	12376811	rs2192828	A	C	7797.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:354,378:0.52:732
chr7	12382637	rs1440030	C	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:64,81:0.56:145
chr7	12383967	rs1440032	T	A	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:159,145:0.48:304
chr7	12391319	rs6967385	G	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr7	12393966	rs6944618	A	G	19943.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=1.297;set=HC	GT:AD:AF:DP	1/1:0,440:1.00:440
chr7	12393974	rs6944626	A	C	21251.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=1.170;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr7	12394053	rs6945167	G	T	21213.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:0,803:1.00:803
chr7	12394202	rs10267441	A	T	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr7	12395813	rs2119141	T	C	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	12396040	rs4719307	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	12400837	rs2053380	G	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:55,58:0.51:113
chr7	12406989	rs6460939	C	G	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.676;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-1.505;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:66,56:0.46:122
chr7	12410112	rs963323	G	A	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:98,105:0.52:203
chr7	12417407	rs7793993	C	T	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr7	12418938	rs10499421	G	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	12418964	rs10270931	T	C	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	12419039	rs10570724	TCA	T	15047.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	12419108	rs6967241	A	T	10202.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr7	12420092	rs1025787	G	C	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr7	12420447	rs6959370	T	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	12420517	rs6460941	T	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	12609988	rs2240571	G	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr7	12610594	rs2240572	A	G	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:100,104:0.51:204
chr7	12611252	rs6460967	T	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:60,58:0.49:118
chr7	12617224	rs55829483	C	G	540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=0.754;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:25,27:0.52:52
chr7	12620804	rs17283717	C	T	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:65,44:0.40:109
chr7	12636026	rs758111	T	C	9604.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:2,380:0.99:382
chr7	12644334	rs849778	G	T	11256.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr7	12644348	rs78612532	G	GGT	7055.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=0.763;MLEAC=2;MLEAF=1.000;MQ=60.14;MQRankSum=0.686;QD=21.91;ReadPosRankSum=0.922;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:27,295:0.92:322
chr7	12675546	rs2708655	A	G	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	12684340	rs2691810	C	T	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:2,132:0.99:134
chr7	12727826	rs2280633	G	C	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:164,168:0.51:332
chr7	13947289	rs10950497	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	13978645	rs3801098	C	T	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.41;ReadPosRankSum=0.366;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr7	13978648	rs3801099	T	A	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.89;ReadPosRankSum=0.967;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:40,37:0.48:77
chr7	13978809	rs9639168	T	C	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:202,196:0.49:398
chr7	14016939	rs2074670	T	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:56,47:0.46:103
chr7	14017007	rs2066977	CC	TG	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.346;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.437;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:77,62:0.45:139
chr7	14017126	rs5882424	T	TA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.205;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	14025640	rs3801110	G	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr7	14025727	rs3823704	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:137,119:0.46:256
chr7	14025766	rs10215655	T	A	4976.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:223,234:0.51:457
chr7	14026357	rs3213661	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	14027867	rs59844225	G	GCA	1801.73	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:80,65:0.45:145
chr7	14028189	rs11364123	CA	C	763.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=10.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=-1.419;SOR=0.096;set=HC	GT:AD:AF:DP	0/1:34,52:0.60:86
chr7	14028220	rs72368501	GA	G,GAA	807.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=1.360;SOR=0.914;set=HC	GT:AD:AF:DP	1/2:6,34,30:0.49,0.43:70
chr7	14028245	rs11460974	G	GA	2781.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.343;QD=17.95;ReadPosRankSum=-0.598;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:12,143:0.92:155
chr7	14028707	rs140879246	TA	T	4561.73	.	AC=1;AF=0.500;AN=2;DB;DP=350;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:177,165:0.48:342
chr7	14028794	rs10622991	T	TAA	1323.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:64,63:0.50:127
chr7	14028860	rs11328804	CA	C	541.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr7	14216442	rs17167945	A	G	3684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=3.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=-0.157;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:194,190:0.49:384
chr7	14217673	rs6966154	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:91,101:0.53:192
chr7	14384832	rs2271267	T	C	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr7	14517650	rs3839747	T	TAC	631.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr7	14517977	rs3823843	G	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr7	14622510	rs17595234	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr7	14622870	rs3795245	A	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:31,40:0.56:71
chr7	14646986	rs17168299	C	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr7	14653054	rs1525088	T	C	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-1.209;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:45,34:0.43:79
chr7	14712793	rs34768816	AG	A	1322.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,46:0.53:86
chr7	14737622	rs145306944	AAAAG	A	1236.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.72;QD=41.22;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	14758273	rs1997040	C	T	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	14775821	rs139628753	TG	T	421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.029;MLEAC=1;MLEAF=0.500;MQ=63.64;MQRankSum=9.439;QD=4.69;ReadPosRankSum=1.574;SOR=1.065;set=HC	GT:AD:AF:DP	0/1:55,35:0.39:90
chr7	14775824	rs80024169	A	C	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=63.83;MQRankSum=9.386;QD=4.84;ReadPosRankSum=1.782;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:54,35:0.39:89
chr7	14789643	rs12673261	C	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr7	14789844	rs1723239	A	C	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr7	14789845	.	T	G	1228.77	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr7	14793399	rs1723225	T	C	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr7	14793478	rs1723224	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.714;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=0.473;SOR=0.174;set=HC	GT:AD:AF:DP	0/1:14,28:0.67:42
chr7	14793696	rs17168389	A	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,46:0.47:98
chr7	14793724	rs4632953	G	C	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr7	14797180	rs147706722	T	TAC	303.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	14881079	rs68031412	CAAA	C,CAA	314.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=22;set=Intersection	GT:AF:DP	1/2:0.41,0.47:17
chr7	15346196	rs5882493	T	TA	1406.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:23,86:0.79:109
chr7	15405005	.	TAA	T	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=-0.000;QD=9.15;ReadPosRankSum=-2.387;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr7	15426956	rs4541808	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	15430259	rs6942879	A	C	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr7	15430599	rs35830831	GT	G	364.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	15458033	rs4469360	C	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	15470543	rs372391223	G	GTTTTTT	1049.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=43.74;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	15584604	rs2189445	G	A	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	15666230	rs3779406	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	15725797	.	ATGGTGG	A,ATGG	26817.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=795;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQRankSum=0.223;QD=40.21;SOR=0.288;set=HC	GT:AD:AF:DP	1/2:1,51,615:0.08,0.92:667
chr7	15726066	rs1050290	G	A	26130.77	.	AC=2;AF=1.00;AN=2;DB;DP=983;set=Intersection	GT:AD:AF:DP	1/1:0,979:1.00:979
chr7	15726117	rs33970897	A	AT,ATT	11955.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=584;set=Intersection	GT:AF:DP	1/2:0.19,0.79:467
chr7	15726129	rs11975534	A	C	12784.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:1,461:1.00:462
chr7	16129153	rs28379235	C	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	16129172	rs9691136	A	G	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	16129214	rs11773533	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr7	16131260	rs1528137	C	T	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.043;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	16255602	rs4389828	A	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	16298434	rs1295153	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.931;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	16298438	rs7799150	T	G	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.825;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.80;ReadPosRankSum=0.668;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr7	16298766	rs5882563	A	AT	191.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	16348059	rs62441885	T	C	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:137,142:0.51:279
chr7	16505054	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.152;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.751;QD=0.77;ReadPosRankSum=1.264;SOR=0.186;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr7	16505341	rs6945425	T	C	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	16566391	rs6461263	T	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	16571973	rs1404173	A	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.28;ReadPosRankSum=0.379;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr7	16571976	rs1404172	C	G	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=0.311;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr7	16572051	rs1404171	C	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:72,83:0.54:155
chr7	16577376	rs6961390	G	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	16598655	rs6979816	G	A	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:67,52:0.44:119
chr7	16605861	rs11463350	A	AT	925.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr7	16607177	rs11379958	T	TA	775.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.103;QD=4.73;ReadPosRankSum=0.260;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:92,72:0.44:164
chr7	16640358	rs543387	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr7	16640491	rs541797	G	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:159,148:0.48:307
chr7	16643467	rs561370	T	A	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:48,71:0.60:119
chr7	16650427	rs572570	C	G	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr7	16655632	rs9638734	C	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr7	16676082	.	TA	T	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.434;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:76,32:0.30:108
chr7	16705132	.	TTG	T	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.972;QD=1.99;ReadPosRankSum=0.714;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:261,52:0.17:313
chr7	16736479	rs7796792	C	G	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=9.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=-0.123;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:68,95:0.58:163
chr7	16745589	rs1149510	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	16793504	rs6975847	A	G	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	16793668	rs75735669	A	G	7528.77	.	AC=1;AF=0.500;AN=2;DB;DP=877;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:483,392:0.45:875
chr7	16793779	rs11405941	G	GC	7848.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	16815786	rs2290836	C	G	10586.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr7	16816000	rs2290837	T	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	16818799	rs6461276	A	G	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	16823095	rs11491	G	A	19273.77	.	AC=2;AF=1.00;AN=2;DB;DP=743;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,738:1.00:738
chr7	16834444	rs2272246	C	T	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	16834551	rs4719480	C	A	17345.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr7	16834597	rs6842	A	G	20643.77	.	AC=2;AF=1.00;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	1/1:0,779:1.00:779
chr7	16837404	rs819010	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	16839501	rs2272245	A	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	16872913	rs4719482	G	A	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	16899197	rs11798	C	T	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	16901185	rs4236289	C	T	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	16901523	rs56817783	TA	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.410;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.702;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr7	16913394	rs10249749	A	G	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	16913520	rs4472406	G	A	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	16913617	rs4389824	A	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	17854532	rs2723501	G	T	3398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.105;QD=8.94;ReadPosRankSum=-0.317;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:208,172:0.45:380
chr7	17854575	rs34649849	G	GAA	612.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.813;QD=4.44;ReadPosRankSum=-0.289;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:82,56:0.41:138
chr7	17854616	rs2723502	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr7	17874271	rs4721660	T	C	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	17874300	rs4721661	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr7	17890413	rs3839705	CA	C	366.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr7	17908130	rs2389858	T	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr7	17913083	rs5882635	A	AC	4078.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	17962382	rs11397631	G	GA	1222.73	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:81,70:0.46:151
chr7	17979793	rs3800963	G	A	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,61:0.52:117
chr7	18066569	rs3800962	C	A	4255.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:230,206:0.47:436
chr7	18067479	rs35708479	ACT	A	3235.73	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr7	18300132	rs13240203	C	T	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr7	18624800	rs2073974	T	C	3153.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:158,149:0.49:307
chr7	18630208	rs1726610	A	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	18631098	.	ATGTG	A,ATG	3753.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.407;QD=28.22;ReadPosRankSum=0.806;SOR=0.689;set=HC	GT:AD:AF:DP	1/2:6,44,83:0.33,0.62:133
chr7	18668945	rs67361882	AT	A	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=0.433;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:15,24:0.62:39
chr7	18674435	rs2285431	T	C	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	18688033	rs145105320	A	ATGTG	1593.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.148;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=2.119;QD=14.89;ReadPosRankSum=-0.527;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:57,50:0.47:107
chr7	18767343	rs1178127	A	G	7072.77	.	AC=1;AF=0.500;AN=2;DB;DP=837;set=Intersection	GT:AD:AF:DP	0/1:469,366:0.44:835
chr7	18788589	rs1178164	T	C	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:149,154:0.51:303
chr7	18993870	rs2389998	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	19768879	rs58315733	G	GTT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.403;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	20180425	rs72337102	TACAC	T	507.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr7	20180507	rs55989776	G	GAC	3165.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:19,100:0.84:119
chr7	20180717	rs3735615	C	G	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr7	20198440	rs975263	G	A	6453.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:241,307:0.56:548
chr7	20371395	rs206197	T	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	20403353	rs35420999	AT	A	1665.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.517;QD=6.36;ReadPosRankSum=0.268;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:140,122:0.47:262
chr7	20406542	rs34556056	A	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	20418678	rs3735619	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr7	20418926	rs1042277	T	C	11304.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr7	20421490	rs2230398	T	C	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:215,195:0.48:410
chr7	20430900	rs10227623	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	20430960	rs3779506	T	C	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	20438370	rs6944997	A	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr7	20438743	rs6945675	C	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr7	20444532	rs2074424	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:64,75:0.54:139
chr7	20663070	rs77363367	A	T	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr7	20668277	rs78414512	C	A	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,55:0.37:149
chr7	20683170	rs150545949	T	C	3751.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:192,185:0.49:377
chr7	20683204	rs7349983	G	T	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:145,153:0.51:298
chr7	20685508	rs11983326	T	G	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:89,127:0.59:216
chr7	20685786	rs11769236	G	A	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:131,138:0.51:269
chr7	20687181	rs2893006	C	T	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.25;ReadPosRankSum=0.913;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:95,79:0.45:174
chr7	20687332	rs75784515	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr7	20687604	rs61732039	A	G	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=1.503;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:81,20:0.20:101
chr7	20690984	rs79943066	A	G	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:135,131:0.49:266
chr7	20691047	rs34603556	T	C	5082.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:272,257:0.49:529
chr7	20691219	rs61227829	G	A	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:124,106:0.46:230
chr7	20698077	rs7807360	C	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr7	20698270	rs2301641	A	G	4375.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:219,218:0.50:437
chr7	20698804	rs73278683	C	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	20706645	rs12535128	G	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	20739632	rs11762180	A	C	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr7	20739672	rs12700230	G	A	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr7	20739774	rs5882753	AT	A	845.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,41:0.95:43
chr7	20739839	rs13229035	A	C	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr7	20744543	rs2158855	A	C	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr7	20744563	rs2158854	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr7	20766943	rs11976861	C	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	20778646	rs6461515	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,77:0.49:158
chr7	20778773	rs6461516	C	G	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr7	20778844	rs11380694	A	AG	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.265;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.20;ReadPosRankSum=-1.490;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr7	20782474	rs12669866	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr7	20803107	rs55827389	T	TC	1364.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	20824614	rs34908430	C	T	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	20826452	rs34863300	T	G	7677.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	21603750	.	G	GA	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.505;QD=2.62;ReadPosRankSum=-1.328;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:51,29:0.36:80
chr7	21628237	rs6963535	C	T	12385.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:2,471:1.00:473
chr7	21639818	rs6461586	T	C	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	21640361	rs10269582	T	C	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr7	21640405	rs10224537	A	G	10490.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr7	21641218	rs3827657	G	A	6932.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr7	21646233	.	CT	C	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=0.000;DP=307;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.586;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:171,80:0.32:251
chr7	21657101	.	T	C	98.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	21657130	rs12539987	C	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	21658855	rs57208694	A	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:129,93:0.42:222
chr7	21658964	rs68184450	C	T	346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.98;ReadPosRankSum=-2.331;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr7	21659554	rs112373177	A	ATTAAT	2743.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:96,72:0.43:168
chr7	21659645	rs56029521	T	C	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:192,176:0.48:368
chr7	21695416	rs11769118	A	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,90:0.59:152
chr7	21695649	rs4385378	G	A	3714.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:130,171:0.57:301
chr7	21723573	rs59447021	A	T	2213.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:81,100:0.55:181
chr7	21727186	rs62445282	A	G	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,71:0.57:125
chr7	21727271	rs62445283	C	T	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr7	21751274	rs145349875	C	A	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr7	21765452	rs12536928	C	T	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:117,122:0.51:239
chr7	21765497	rs11768670	G	A	2625.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:174,135:0.44:309
chr7	21765636	rs2965424	T	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	21775153	rs2072219	A	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	21775210	rs2270022	A	G	4697.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	21775443	rs2072221	G	A	13295.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr7	21778449	rs1109806	C	T	3447.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:241,181:0.43:422
chr7	21779084	rs2906686	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr7	21779104	rs933353	C	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr7	21779278	rs9639393	A	G	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:134,139:0.51:273
chr7	21779331	rs933354	T	C	2500.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:118,123:0.51:241
chr7	21779372	rs188996063	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:67,80:0.54:147
chr7	21781807	rs1029598	T	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:134,100:0.43:234
chr7	21789442	rs4355679	T	C	8152.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr7	21789835	rs189821372	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:114,89:0.44:203
chr7	21813318	rs11374411	A	AT	3363.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	21818486	rs4273751	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	21824122	rs6965750	G	A	3646.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:232,186:0.44:418
chr7	21826487	rs72657385	T	C	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:48,76:0.61:124
chr7	21857776	rs6957850	A	T	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr7	21892023	rs55939718	T	TAA	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.043;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr7	21893993	rs4722064	G	T	5408.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:387,291:0.43:678
chr7	21901566	rs4722067	T	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	21901740	rs35912578	C	CT	146.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.766;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr7	21907452	rs5882827	G	GT	4991.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	21907458	rs4995598	A	G	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	21907696	rs11773744	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	21907722	rs55801704	C	CT	124.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.092;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr7	21920556	rs62445884	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr7	21924014	rs6461613	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	21932044	rs12537531	C	T	2301.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:103,106:0.51:209
chr7	21939032	rs56333627	C	A	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:219,227:0.51:446
chr7	21939089	rs55714084	C	A	2219.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:112,102:0.48:214
chr7	21939485	rs34245961	C	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr7	21940480	rs56268505	C	T	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	21940557	rs10555456	AACTT	A	4320.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	21940960	rs7971	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr7	21941861	rs60370798	ATCTT	A	5793.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	21945086	rs6953368	C	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:38,64:0.63:102
chr7	21945840	rs4445125	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr7	21951105	rs11978167	T	G	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:34,45:0.57:79
chr7	21985347	rs1406706	G	A	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	22165180	rs2302000	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr7	22165421	rs17146285	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:28,37:0.57:65
chr7	22190131	rs11321630	GA	G,GAAAA	885.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.285;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.62;MQRankSum=1.129;QD=10.42;ReadPosRankSum=0.600;SOR=0.560;set=HC	GT:AD:AF:DP	1/2:8,63,14:0.74,0.16:85
chr7	22197507	rs7809342	A	G	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	22200255	rs955484	G	C	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:152,159:0.51:311
chr7	22202117	rs12592	G	A	3488.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:153,173:0.53:326
chr7	22202485	rs1981601	T	C	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:92,127:0.58:219
chr7	22233674	rs6965394	T	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:120,131:0.52:251
chr7	22242370	rs4722110	G	T	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr7	22242561	rs11763898	T	C	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-0.490;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:66,88:0.57:154
chr7	22259670	rs1859807	C	A	6113.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:356,306:0.46:662
chr7	22330862	rs367948789	TA	T	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.573;QD=2.17;ReadPosRankSum=-0.642;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:115,50:0.30:165
chr7	22355166	.	CTA	C	136	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=25;MQ=60.0;NF=0;NR=7;PP=136;QD=20.2857142857;SC=CAATAGCATACTATATATATA;SbPval=1.0;Source=Platypus;TC=34;TCF=1;TCR=33;TR=7;WE=22355175;WS=22355156;set=Platypus	GT:AD:AF:DP	0/1:27,7:0.21:34
chr7	22459324	rs2177142	G	A	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	22478207	rs2528843	G	T	8552.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr7	22532260	rs62447564	A	G	11773.77	.	AC=1;AF=0.500;AN=2;DB;DP=1232;set=Intersection	GT:AD:AF:DP	0/1:634,596:0.48:1230
chr7	22533452	rs201338533	C	T	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:209,102:0.33:311
chr7	22539887	rs140966178	G	A	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr7	22857477	rs2286499	T	C	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr7	22857504	rs2286498	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr7	22857589	rs7782015	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.19;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	22857682	rs28617621	A	G	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=0.187;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr7	22861639	rs981792	C	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr7	22861739	rs35353454	T	C	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:171,151:0.47:322
chr7	22861978	rs4354222	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	22862131	rs2270108	A	C	2325.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:84,90:0.52:174
chr7	22862183	rs2270107	G	A	5180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.455;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.933;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:205,232:0.53:437
chr7	22862192	rs2270106	A	G	17843.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr7	22896231	rs1608553	G	C	3201.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:151,152:0.50:303
chr7	22896340	rs5882865	AC	A	3914.73	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:88,182:0.67:270
chr7	23000783	rs35493358	G	GCTCT	1823.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	23015831	rs3735231	T	C	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	23016530	rs2078535	A	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	23164526	rs2058275	C	G	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:71,79:0.53:150
chr7	23195555	rs141774430	CTTTAT	C	3968.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	23226646	rs367957893	CT	C	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.246;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr7	23313171	rs2268748	T	C	4953.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:248,255:0.51:503
chr7	23352512	rs199653	C	A	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr7	23357321	rs156414	C	T	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:144,146:0.50:290
chr7	23545460	rs199618319	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr7	23552392	rs201252500	TA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.396;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.749;QD=1.20;ReadPosRankSum=-0.612;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr7	23562175	rs35027244	TA	T	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=0.631;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr7	23624570	rs227933	G	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	23719766	rs56391241	G	A	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	23719779	rs56359038	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	23727944	rs7802834	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	23727960	rs13237857	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	23737795	rs5029444	T	C	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	23757162	rs6945306	G	C	10323.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr7	23768907	rs12176610	A	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	23794183	rs4722267	A	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	23808604	rs61564984	C	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	23810517	rs7785154	G	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.45;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	23810523	rs41273996	C	G	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.60;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	23810845	rs1469001	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	23823144	rs10950961	A	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	23826066	rs1862068	A	G	4174.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	24324808	rs16140	C	G	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:186,182:0.49:368
chr7	24329001	rs113179092	AT	A	657.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	24329103	rs35313836	C	CT	1644.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:96,104:0.52:200
chr7	24329133	rs5574	C	T	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:175,148:0.46:323
chr7	24703298	rs1053962	G	A	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=-1.694;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:65,58:0.47:123
chr7	24718710	rs722218	A	C	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	24742436	rs17149912	T	C	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:68,58:0.46:126
chr7	24742553	rs2240005	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr7	24742585	rs2074142	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	24746022	rs2269812	A	G	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr7	24747910	rs2721809	G	A	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	24756810	rs56166822	A	AGTCCCTCTGCTGAGGGATCCTCTGCTGGGG	11575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=914;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=62.52;MQRankSum=18.949;QD=18.29;ReadPosRankSum=0.301;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:330,303:0.48:633
chr7	24758645	rs876307	G	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	24758795	rs876305	T	C	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	24784403	rs2521768	C	T	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr7	24789082	rs2521770	C	T	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	24839712	rs3088014	T	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr7	24843810	rs2285651	G	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr7	24844066	rs2285653	C	G	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=0.477;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:73,45:0.38:118
chr7	24854765	rs1044956	G	A	4055.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:256,209:0.45:465
chr7	24860000	rs6979174	G	C	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	24873911	rs2285687	T	G	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr7	24874459	rs2285688	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	24881764	rs140528204	A	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr7	24888620	rs757156	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	24891947	rs6461822	C	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	24901503	rs11324094	CT	C	87.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.431;QD=5.85;ReadPosRankSum=-0.243;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr7	24902762	rs2285690	C	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,26:0.43:60
chr7	24903107	rs2285691	C	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:144,68:0.32:212
chr7	24904868	rs2040689	T	A	4999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.415;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.49;ReadPosRankSum=0.955;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:118,126:0.52:244
chr7	24904873	rs3735543	G	A	5081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=0.755;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:126,137:0.52:263
chr7	24904889	rs2040690	T	C	4057.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:167,188:0.53:355
chr7	25163744	rs11267038	A	C	3679.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:226,188:0.45:414
chr7	25181912	rs2285738	T	C	9809.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr7	25182001	rs2285737	C	T	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	25182172	rs2285736	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	25191044	rs12532548	G	A	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	25194506	rs12538022	T	C	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	25194618	rs2523073	G	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	25194665	rs2523072	G	C	3506.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	25194753	rs12535348	C	T	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	25194857	rs2717899	A	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	25194918	rs2523071	A	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	25197987	rs34214585	C	CAA	137.76	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	25200976	rs13221848	A	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	25218661	rs10642607	A	AAAACAAAC	2100.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	25267963	rs886354	G	C	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=0.746;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:39,54:0.58:93
chr7	25989520	rs6977848	T	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr7	25989732	rs111299611	GA	G	1681.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,53:0.60:88
chr7	26247984	.	CT	C	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.589;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:115,33:0.22:148
chr7	26724279	rs212850	T	G	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:1,164:0.99:165
chr7	26778406	rs10951145	A	G	6874.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	26778568	rs73077525	T	G	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:67,73:0.52:140
chr7	27135314	rs10951154	C	T	18896.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=964;ExcessHet=3.0103;FS=1.297;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.88;ReadPosRankSum=-0.067;SOR=0.627;set=HC	GT:AD:AF:DP	1/1:42,784:0.95:826
chr7	27141267	rs706016	C	T	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	27147451	rs59078276	TA	T	661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.084;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=14.412;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.000;QD=9.32;ReadPosRankSum=2.586;SOR=2.434;set=HC	GT:AD:AF:DP	0/1:14,57:0.80:71
chr7	27169093	rs2158218	T	G	15819.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr7	27169617	rs6943542	T	C	3605.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	27169934	rs10251056	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	27170145	rs6944345	T	G	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	27196069	rs2301720	A	C	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:200,184:0.48:384
chr7	27196113	rs2301721	C	T	3907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.308;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:206,196:0.49:402
chr7	27203139	rs7810502	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.628;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=0.612;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:25,37:0.60:62
chr7	27211548	rs34957925	C	T	2822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.906;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=1.357;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:126,136:0.52:262
chr7	27224962	.	T	TCC	115	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=3;MGOF=16;MMLQ=28;MQ=59.88;NF=0;NR=8;PP=115;QD=18.625;SC=TCCGGGCCTTTTCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=23;TCF=4;TCR=19;TR=8;WE=27224971;WS=27224952;set=Platypus	GT:AD:AF:DP	1/0:15,8:0.35:23
chr7	27238691	rs2071265	C	G	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	27278804	rs144734005	C	CACGGCCTGGAAGATG	838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.588;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.520;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr7	27279191	rs3801321	T	G	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:112,103:0.48:215
chr7	27283990	rs201584461	GC	G	497.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:110,37:0.25:147
chr7	27497389	rs56098493	G	A	3838.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:222,198:0.47:420
chr7	27571058	rs1014372	C	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	27578068	rs17607303	T	C	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr7	27578161	rs75580325	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.704;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.284;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:26,29:0.53:55
chr7	27578167	rs9639553	C	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.69;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	27581495	rs6462029	T	C	3821.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	27582783	rs978447	G	A	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	27668860	rs6415252	C	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	27671899	rs7779990	T	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	27827103	rs11540483	T	A	2240.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr7	27872675	rs56070801	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	27886011	rs141603370	C	CATATACGTATACGTGTAT	5152.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	27886171	rs6462054	A	G	10751.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr7	27953035	rs210	A	G	4329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=1.541;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:180,217:0.55:397
chr7	28031704	rs73089199	T	C	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:92,94:0.51:186
chr7	28319007	rs177483	T	A	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:292,187:0.39:479
chr7	28319234	rs177484	A	C	4137.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:256,205:0.44:461
chr7	28534501	rs3216916	C	CT	1278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.312;QD=6.87;ReadPosRankSum=0.981;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:102,84:0.45:186
chr7	28857606	rs12531253	G	A	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=8.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.741;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:58,74:0.56:132
chr7	28858456	rs10951205	A	G	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	28996220	rs1006521	G	A	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr7	28996944	rs740250	T	C	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	28997497	rs67010340	GC	G	11742.73	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	28997596	rs5883174	G	GC	3704.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	29070209	rs7313	G	A	9023.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	29103867	rs644763	T	C	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.85;SOR=1.145;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	29103867	.	TGGAAAGACAT	CGGAAAGACAC,CGGAAAGACAT	1160	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=23;MQ=60.0;NF=34,77;NR=48,108;PP=1160,1082;QD=14.7983887178;SC=GAAGGGGCATTGGAAAGACAT;SbPval=0.53;Source=Platypus;TC=185;TCF=77;TCR=108;TR=82,185;WE=29103885;WS=29103857;set=Platypus	GT:AF:DP	0/1:0.44:185
chr7	29103877	rs2074783	T	C	1772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=0.191;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:88,88:0.50:176
chr7	29103944	rs34641639	A	AT	1780.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	29105776	rs2270027	A	G	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.014;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:89,72:0.45:161
chr7	29111578	rs2074784	A	C	4514.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:265,218:0.45:483
chr7	29111620	rs317719	A	C	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr7	29111634	rs2074785	C	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:95,67:0.41:162
chr7	29132212	rs2687636	A	G	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:151,135:0.47:286
chr7	29160434	.	CAA	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-0.666;QD=2.02;ReadPosRankSum=1.941;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr7	29186256	rs245880	A	G	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=-0.444;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:68,75:0.52:143
chr7	29186576	rs245881	A	G	8688.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	29394048	rs757327	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	29394220	rs66659316	CTT	C	3169.73	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:151,161:0.52:312
chr7	29394435	rs10215545	C	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:45,40:0.47:85
chr7	29407518	rs142914048	TTC	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.892;QD=0.58;ReadPosRankSum=1.571;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:299,36:0.11:335
chr7	29437867	rs7799981	T	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	29439641	rs12669481	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr7	29439773	rs10248000	C	T	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=1.098;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:77,81:0.51:158
chr7	29440024	rs56056122	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr7	29520042	rs1476991	G	A	3464.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:145,164:0.53:309
chr7	29523563	rs12665897	G	A	3247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=-0.791;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:152,160:0.51:312
chr7	29544298	.	C	CT	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-2.454;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:100,57:0.36:157
chr7	29544468	rs73684725	A	G	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:130,132:0.50:262
chr7	29546763	rs11388362	A	AT	1071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.026;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:46,75:0.62:121
chr7	29552463	rs1420145	C	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	29605975	rs2302618	C	G	21330.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:4,829:1.00:833
chr7	29688702	rs66956566	A	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr7	29688768	rs73090343	T	C	3903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.960;QD=19.82;ReadPosRankSum=-0.453;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:96,101:0.51:197
chr7	29688773	rs73687726	T	C	4122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.917;QD=19.45;ReadPosRankSum=-0.739;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:101,111:0.52:212
chr7	29688827	rs1641209	T	C	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:133,147:0.53:280
chr7	29688860	rs17150665	T	G	2964.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:138,140:0.50:278
chr7	29689018	rs1641210	T	C	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-1.039;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:67,95:0.59:162
chr7	29689158	rs17136535	C	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:77,79:0.51:156
chr7	29689176	rs111649163	C	T	4203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=-0.101;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:89,108:0.55:197
chr7	29689180	rs76480599	A	G	4352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=0.336;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:95,114:0.55:209
chr7	29689321	rs118145400	T	C	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:110,73:0.40:183
chr7	29689338	rs17150667	G	T	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:60,88:0.59:148
chr7	29720392	rs113821008	TACA	T	2182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-4.790;QD=6.03;ReadPosRankSum=0.078;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:288,74:0.20:362
chr7	29720404	rs850108	A	G	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.980;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-4.335;QD=5.91;ReadPosRankSum=-2.553;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:294,69:0.19:363
chr7	29771546	rs112712037	CT	C	1148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.659;QD=6.24;ReadPosRankSum=-0.333;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:84,100:0.54:184
chr7	29924072	rs3750092	A	G	10047.77	.	AC=1;AF=0.500;AN=2;DB;DP=1081;set=Intersection	GT:AD:AF:DP	0/1:564,486:0.46:1050
chr7	29924221	rs13310795	T	C	11794.77	.	AC=1;AF=0.500;AN=2;DB;DP=1182;set=Intersection	GT:AD:AF:DP	0/1:584,590:0.50:1174
chr7	29944062	rs4722959	A	T	2981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.408;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=-0.517;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:136,146:0.52:282
chr7	30113862	rs149548208	T	TTG	1137.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:73,52:0.42:125
chr7	30177095	rs6954451	G	T	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	30177278	rs6954379	C	T	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:156,170:0.52:326
chr7	30329453	rs373052300	CTGT	C	1272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410;ClippingRankSum=0.000;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=-10.277;QD=2.51;ReadPosRankSum=2.930;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:444,63:0.12:507
chr7	30673512	.	T	TA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.597;QD=1.64;ReadPosRankSum=0.695;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr7	30693081	rs77113016	C	T	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr7	30700368	rs117102305	C	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	30728908	rs255100	A	T	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:142,101:0.42:243
chr7	30739409	.	C	T	345	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=58.47;NF=19;NR=7;PP=345;QD=14.606585098;SC=ACCCCCTCACCCAGGCACGGG;SbPval=0.78;Source=Platypus;TC=69;TCF=46;TCR=23;TR=26;WE=30739417;WS=30739399;set=Platypus	GT:AD:AF:DP	0/1:43,26:0.38:69
chr7	30739525	rs255119	G	A	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:73,86:0.54:159
chr7	30739691	rs107540	A	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr7	30795331	rs2302340	A	G	12130.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr7	30795436	rs4720015	T	G	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	30805811	rs71830535	TCA	T	857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.211;QD=6.97;ReadPosRankSum=-1.564;SOR=1.060;set=HC	GT:AD:AF:DP	0/1:69,54:0.44:123
chr7	30805846	rs60677895	CA	C	470.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.803;QD=2.80;ReadPosRankSum=3.317;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:125,43:0.26:168
chr7	30805848	rs59142093	CA	C	470.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.872;QD=2.63;ReadPosRankSum=3.783;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:136,43:0.24:179
chr7	30805849	.	ACC	CCC	2962	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000,1.0000;HP=3;HapScore=1;MGOF=9;MMLQ=24;MQ=59.85;NF=22,74;NR=33,46;PP=2401,2962;QD=43.7090909091;SC=ACACACACACACCTACCTTTC;SbPval=0.6;Source=Platypus;TC=171;TCF=71;TCR=100;TR=55,120;WE=30805858;WS=30805839;set=Platypus	GT:AD:AF:DP	0/1:129,120:0.48:249
chr7	30805849	.	ACC	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000,1.0000;HP=3;HapScore=1;MGOF=9;MMLQ=24;MQ=59.85;NF=22,74;NR=33,46;PP=2401,2962;QD=43.7090909091;SC=ACACACACACACCTACCTTTC;SbPval=0.6;Source=Platypus;TC=171;TCF=71;TCR=100;TR=55,120;WE=30805858;WS=30805839;set=Platypus	GT:AD:AF:DP	0/1:116,55:0.32:171
chr7	31011485	rs4988501	A	G	6856.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:300,308:0.51:608
chr7	31023502	rs28371570	G	A	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr7	31121501	rs2302475	T	C	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr7	31125082	rs11410563	A	AG	3303.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	31132235	rs112436908	CT	C	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.626;QD=2.09;ReadPosRankSum=1.738;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:221,92:0.29:313
chr7	31135471	rs2267734	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr7	31569547	rs12701110	G	A	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chr7	31569579	rs2067727	G	T	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.846;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr7	31592491	rs7793859	T	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr7	31592733	rs7811042	C	A	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:107,82:0.43:189
chr7	31594166	rs2286710	C	T	9388.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	31594258	rs12155214	G	T	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.262;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:87,106:0.55:193
chr7	31594508	rs2286711	C	T	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=2.180;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:64,72:0.53:136
chr7	31609317	rs17160268	T	A	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:96,99:0.51:195
chr7	31617733	rs6945679	T	C	15889.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr7	31618008	rs10252720	A	G	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr7	31681765	rs10239388	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr7	31682453	rs4141001	C	T	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:199,168:0.46:367
chr7	31682601	rs38396	T	C	3964.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:282,200:0.41:482
chr7	31682853	rs38397	T	C	6353.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:301,309:0.51:610
chr7	31683410	rs10247620	G	A	15007.77	.	AC=1;AF=0.500;AN=2;DB;DP=1424;set=Intersection	GT:AD:AF:DP	0/1:699,720:0.51:1419
chr7	31683610	rs38398	G	A	12300.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr7	31691697	rs3735424	T	C	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:25,40:0.62:65
chr7	31735263	rs34173	G	C	2561.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:136,122:0.47:258
chr7	31830095	rs982857	A	G	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	31855420	rs1860789	A	G	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	31855578	rs1860790	G	A	17895.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	1/1:2,721:1.00:723
chr7	31876766	rs2270218	T	C	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	31890106	rs917756	T	C	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	31918879	rs1860786	C	T	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	32209425	rs977625	A	G	15974.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr7	32338337	rs215607	G	A	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	32527009	rs7800049	G	A	18823.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,717:1.00:717
chr7	32528796	rs41276006	T	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr7	32529622	rs12532994	A	G	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr7	32529936	rs1584614	G	C	18177.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,710:1.00:710
chr7	32591135	rs3213972	G	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	32591158	rs3213973	G	A	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	32593234	rs10717407	CT	C	1382.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:8,89:0.92:97
chr7	32593271	rs6961786	G	A	5166.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.96;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	32594278	rs2290210	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	32598087	rs12673921	G	A	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	32598138	rs12673881	C	T	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	32598359	rs1562828	G	A	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	32598524	rs1466144	G	A	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	32599204	rs34973430	A	AT	406.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	32609565	rs2305320	A	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	32613020	rs1993050	A	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr7	32615553	rs6462381	C	T	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	32619653	rs6462383	T	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	32620325	rs35499747	T	TTG	2338.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr7	32623250	rs1817046	C	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr7	32660758	rs2302066	C	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:5,76:0.94:81
chr7	32772477	rs2923266	C	A	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.307;MLEAC=1;MLEAF=0.500;MQ=56.70;MQRankSum=-9.497;QD=1.07;ReadPosRankSum=-2.635;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:98,18:0.16:116
chr7	32854758	rs2305336	A	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr7	32909182	rs752730	G	A	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:231,208:0.47:439
chr7	33003171	rs3110942	G	A	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:107,95:0.47:202
chr7	33016120	rs3750116	G	T	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	33028487	rs35727868	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr7	33044951	.	C	G	291.77	.	AC=1;AF=0.500;AN=2;DP=658;set=Intersection	GT:AD:AF:DP	0/1:573,85:0.13:658
chr7	33059407	rs2392209	A	G	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.748;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.09;ReadPosRankSum=1.763;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chr7	33060755	rs17170153	A	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr7	33060946	rs3750117	A	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr7	33063492	rs6955792	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr7	33102462	rs13228639	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr7	33102514	rs13228827	G	A	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr7	33136983	rs6462460	G	A	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	33139147	rs17472556	G	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	33186082	rs1969575	C	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	33217071	.	C	CT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.006;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.048;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:85,19:0.18:104
chr7	33282577	rs7793096	G	A	11804.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr7	33297108	rs142354634	TCA	T	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr7	33385852	rs6974593	C	T	8715.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	33388618	rs9785054	C	T	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	33573815	.	T	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.068;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:150,52:0.26:202
chr7	33977125	.	G	GGTGTGTGTGT,GGTGTGTGTGTGT	496.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=29;set=Intersection	GT:AF:DP	1/1:1.00:16
chr7	34009946	rs10265207	C	T	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	34192762	rs6968741	G	C	10468.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr7	34685696	rs1585256	A	T	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.294;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:43,47:0.52:90
chr7	34685772	rs1582277	A	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=0.194;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr7	34687472	.	T	TA	31	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5032;HP=6;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=31;QD=28.0;SC=ACACAACTTGTAAAAAATAAG;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=2;WE=34687480;WS=34687462;set=Platypus	GT:AD:AF:DP	1/0:2,2:0.50:4
chr7	34697982	rs887020	A	G	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	34698210	rs2530548	A	G	4439.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:164,134:0.45:298
chr7	34698234	rs2530549	A	C	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=-0.725;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:132,98:0.43:230
chr7	34698251	rs2530550	C	G	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:115,79:0.41:194
chr7	34698321	rs2530551	A	G	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.31;ReadPosRankSum=0.202;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr7	34698331	rs401256	G	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=-0.022;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	34699973	rs2530553	T	C	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr7	34724373	.	CAA	C	1015.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-1.664;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:53,44:0.45:97
chr7	34818113	rs324981	A	T	5615.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:337,282:0.46:619
chr7	34819123	rs62462890	T	A	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.63;ReadPosRankSum=-0.148;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	34874209	rs17170017	C	G	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:67,88:0.57:155
chr7	34979082	rs3735410	C	T	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	34979159	rs718812	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	34979748	.	C	CT	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=4.89;ReadPosRankSum=0.898;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:34,23:0.40:57
chr7	34979905	rs1637696	C	A	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr7	34981591	rs35242437	G	GT	544.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr7	34987251	rs191372369	A	T	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-2.354;QD=7.23;ReadPosRankSum=1.290;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:56,40:0.42:96
chr7	34989337	rs2021390	T	G	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:128,102:0.44:230
chr7	34989364	rs2021391	T	C	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:162,154:0.49:316
chr7	34995022	rs117105222	T	C	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.034;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.61;MQRankSum=-0.125;QD=1.89;ReadPosRankSum=1.438;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:80,17:0.18:97
chr7	34995075	rs1637670	A	G	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,15:0.30:50
chr7	35050217	rs7782779	A	G	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=9.154;QD=10.07;ReadPosRankSum=-2.456;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:94,94:0.50:188
chr7	35050227	rs328939	C	T	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,87:0.51:172
chr7	35053484	rs76882258	CTA	C	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr7	35057721	rs66718921	AT	A	54.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	35058177	rs10282006	A	G	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=0.004;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:60,41:0.41:101
chr7	35058349	rs6963995	C	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	35121274	rs2286846	C	T	8059.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:401,400:0.50:801
chr7	35225518	rs10262841	C	A	3484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.972;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=3.178;QD=12.95;ReadPosRankSum=0.982;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:105,164:0.61:269
chr7	35270988	rs2109090	G	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;MQ=58.45;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	35280693	rs2072434	C	T	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	35288276	rs17675148	T	C	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	35289889	rs5883498	C	CA	2075.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	35289941	rs5883499	C	CA	1182.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	35293193	rs336283	A	G	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	35414769	rs2553113	C	T	9290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.47;ReadPosRankSum=-1.076;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:259,244:0.49:503
chr7	35414772	rs2553114	C	T	9256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.846;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=-1.104;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:256,238:0.48:494
chr7	35673799	rs2305333	T	C	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	35678214	rs3816422	C	T	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	35709772	rs3779235	G	A	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	35709842	rs3779234	C	T	8269.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	35840898	rs59008252	G	GC	4221.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	35851738	rs57121305	CA	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=1.406;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	35928551	rs6945909	A	G	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr7	35928678	rs58918750	T	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr7	36124231	rs5883531	G	GT	3344.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:140,114:0.45:254
chr7	36124292	rs1986593	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:134,102:0.43:236
chr7	36320821	rs196586	G	A	9759.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr7	36324436	rs13232200	G	A	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:67,48:0.42:115
chr7	36327410	rs196595	A	G	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:187,203:0.52:390
chr7	36338564	rs2241141	G	A	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,69:0.53:131
chr7	36338589	rs11773889	C	T	3310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=2.120;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:107,104:0.49:211
chr7	36338749	rs196613	T	C	15802.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr7	36338841	rs196614	T	C	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,314:0.99:316
chr7	36370499	rs196659	C	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	36370555	rs196660	G	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	36450514	rs148159916	TC	T	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr7	36462514	rs73330576	G	A	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr7	36552656	rs7986	G	A	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:117,136:0.54:253
chr7	36552729	rs59476355	A	AT	9069.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr7	36552790	rs57543920	G	GT	11944.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr7	36561469	rs6462681	G	T	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	36588405	rs5883561	A	AC	1908.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	36588955	rs3735397	G	A	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	36656035	rs3735386	G	C	6145.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:243,299:0.55:542
chr7	36656147	rs2727818	A	T	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:68,81:0.54:149
chr7	36661423	rs2727822	T	C	2608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-1.326;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:200,141:0.41:341
chr7	36698684	rs6959295	C	T	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	36726476	rs58947801	CGTGT	C,CGT	1529.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.699;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=27.32;ReadPosRankSum=-2.921;SOR=1.823;set=HC	GT:AD:AF:DP	1/2:3,14,39:0.25,0.70:56
chr7	36729757	rs7790095	T	C	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	36729822	rs11427708	C	CA	5302.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:13,239:0.95:252
chr7	36729951	rs6462691	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	36763672	rs2228410	C	T	6428.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr7	36895342	rs13246439	C	T	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:125,85:0.40:210
chr7	36934448	rs6462722	A	G	3299.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	37073097	rs58163267	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=0.494;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr7	37136181	.	AC	A	3302.73	.	AC=1;AF=0.500;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	0/1:90,97:0.52:187
chr7	37172594	rs5883589	AT	A	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=3.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=0.249;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:31,18:0.37:49
chr7	37252929	rs7809365	T	C	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.073;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:42,38:0.47:80
chr7	37253093	rs7809548	T	A	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=-1.208;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr7	37256392	rs7806425	G	A	3414.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:164,164:0.50:328
chr7	37257580	rs6462745	C	A	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.212;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr7	37262140	rs2302668	C	T	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:136,139:0.51:275
chr7	37298800	rs2717968	C	T	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:135,113:0.46:248
chr7	37299056	rs2717969	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr7	37355590	rs11383031	C	CT	4041.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	37889786	rs10271309	A	G	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr7	37901490	rs17235118	C	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,33:0.45:73
chr7	37901581	rs2249451	G	A	7340.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr7	37903853	rs3816419	A	T	454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-0.683;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr7	37903904	rs3816418	C	T	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	37904065	rs3841582	TAAC	T	103.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr7	37904099	rs3816417	G	A	44.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr7	37907304	rs10250905	T	C	4318.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	37933983	rs10260487	C	G	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr7	37934146	rs56128139	TA	CT	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=2.025;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr7	37934234	rs10261071	G	A	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-1.132;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr7	37936530	rs3213975	T	C	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:172,172:0.50:344
chr7	37951726	rs1132553	G	A	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	37960262	rs201513905	AAGGCAGTGGCAGC	A	7543.73	.	AC=1;AF=0.500;AN=2;DB;DP=977;MQ=60.35;set=Intersection	GT:AD:AF:DP	0/1:315,334:0.51:649
chr7	37960835	rs13240429	G	A	1194.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:77,58:0.43:135
chr7	37960955	rs4723716	T	G	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	37966201	rs12666164	T	C	1035.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:68,48:0.41:116
chr7	37988589	rs2044831	C	T	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:107,111:0.51:218
chr7	38253923	rs3778894	C	A	2069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=1.850;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:131,106:0.45:237
chr7	38259354	rs2392540	T	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr7	38268395	rs7795499	C	T	1184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.484;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:98,67:0.41:165
chr7	38279663	rs145153957	T	C	186.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=41.68;MQRankSum=-2.200;QD=20.75;ReadPosRankSum=-0.000;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr7	38282130	rs369281628	GGT	G	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.067;ClippingRankSum=0.000;DB;DP=553;ExcessHet=3.0103;FS=1.325;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=4.167;QD=0.30;ReadPosRankSum=0.869;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:382,48:0.11:430
chr7	38299727	rs138027161	T	C	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.591;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=5.577;MLEAC=1;MLEAF=0.500;MQ=47.61;MQRankSum=-2.683;QD=4.86;ReadPosRankSum=-0.128;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:215,102:0.32:317
chr7	38356943	rs34482025	G	GA	4087.73	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:188,214:0.53:402
chr7	38357075	rs11769443	T	C	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:56,67:0.54:123
chr7	38388735	rs191612253	A	G	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.619;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=8.271;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-6.917;QD=4.23;ReadPosRankSum=-4.116;SOR=1.624;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr7	38388777	rs13227725	G	A	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:76,27:0.26:103
chr7	38388895	rs76205258	A	T	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:106,87:0.45:193
chr7	38389410	rs140194030	G	C	4838.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:186,220:0.54:406
chr7	38393278	rs76380259	GT	G	1944.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:73,85:0.54:158
chr7	38393319	rs201871758	A	G	3169.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:144,157:0.52:301
chr7	38393343	rs77429066	T	C	4921.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:203,229:0.53:432
chr7	38393390	rs73357290	T	G	7575.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:300,356:0.54:656
chr7	38393424	rs73357292	G	A	8180.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:312,385:0.55:697
chr7	38393448	rs78292907	G	C	7464.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:277,347:0.56:624
chr7	38393524	rs73357293	C	T	5508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.116;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=10.558;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-0.539;QD=19.96;ReadPosRankSum=0.953;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:128,148:0.54:276
chr7	38393534	rs74465876	C	T	5167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=6.965;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-0.032;QD=20.59;ReadPosRankSum=1.427;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:119,132:0.53:251
chr7	38393592	rs34822522	C	A	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:149,108:0.42:257
chr7	38393654	rs147704672	T	G	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:219,130:0.37:349
chr7	38393713	rs2215952	A	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:184,104:0.36:288
chr7	38393798	rs3999882	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr7	38397930	rs2392550	A	G	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr7	38398565	rs2020451	G	C	5012.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:258,238:0.48:496
chr7	38398610	rs1808313	C	G	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:104,81:0.44:185
chr7	38402496	rs2735118	A	G	6989.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:320,327:0.51:647
chr7	38402781	rs2011898	A	G	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:230,157:0.41:387
chr7	38424328	rs2810	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr7	38424702	rs34834299	T	TA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.265;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=2.282;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr7	38429370	rs6977263	C	T	3999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.13;ReadPosRankSum=0.873;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:198,197:0.50:395
chr7	38429552	rs36122520	T	A	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:85,102:0.55:187
chr7	38429572	rs35606872	GT	G	2652.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:64,78:0.55:142
chr7	38429584	rs34824107	C	G	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:51,68:0.57:119
chr7	38431430	rs6949992	A	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:52,51:0.50:103
chr7	38431470	rs142938499	G	A	1224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.667;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,62:0.47:131
chr7	38431644	rs79759611	G	GC	1584.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;MQ=60.92;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	38433726	rs35024632	T	G	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:233,215:0.48:448
chr7	38460546	rs1019287	G	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:60,65:0.52:125
chr7	38462153	rs13240983	C	T	1169.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr7	38462154	rs199944894	GTATCTATCTATC	G	1231.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr7	38462179	rs13228275	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.707;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=-2.152;QD=9.75;ReadPosRankSum=-3.091;SOR=1.202;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr7	38462183	rs113131464	T	C	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.521;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.876;MLEAC=1;MLEAF=0.500;MQ=61.32;MQRankSum=-2.169;QD=10.38;ReadPosRankSum=-3.790;SOR=1.575;set=HC	GT:AD:AF:DP	0/1:57,24:0.30:81
chr7	38462187	.	TATCTATCTATCTATCC	T	2995	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=23;MQ=61.04;NF=0;NR=43;PP=2995;QD=20;SC=TCTATCTATCTATCTATCTAT;SbPval=1.0;Source=Platypus;TC=53;TCF=0;TCR=53;TR=43;WE=38462210;WS=38462143;set=Platypus	GT:AD:AF:DP	0/1:10,43:0.81:53
chr7	38466659	rs78935089	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=2.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.441;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	38467510	rs34181423	A	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:105,83:0.44:188
chr7	38467923	rs6958300	A	G	13112.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr7	38468488	rs35065491	T	C	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:139,140:0.50:279
chr7	38468695	rs2392572	C	T	5107.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:263,239:0.48:502
chr7	38500782	rs12670885	G	A	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.391;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:24,17:0.41:41
chr7	38504905	rs722336	C	A	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.74;ReadPosRankSum=0.045;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	38505014	rs722335	A	C	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr7	38505025	rs722334	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	38514851	rs35367242	A	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr7	38514868	rs41279585	G	A	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,38:0.47:81
chr7	38530568	rs2043786	G	T	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	38530807	rs3837078	T	TA	3274.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	38533972	rs3735089	A	C	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,48:0.49:98
chr7	38543103	rs10225047	T	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=2.527;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	38543103	.	TGGGT	GCGGT,GGGGG	2944	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=10;HapScore=1;MGOF=24;MMLQ=7;MQ=59.78;NF=78,36;NR=31,1;PP=2944,1605;QD=20;SC=GGCGGGGGGGTGGGTGGTGGA;SbPval=0.78;Source=Platypus;TC=181;TCF=120;TCR=61;TR=109,37;WE=38543115;WS=38543085;set=Platypus	GT:AF:DP	0/1:0.60:181
chr7	38543104	rs10268443	G	C	4208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.438;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=7.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.38;ReadPosRankSum=1.663;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:21,109:0.84:130
chr7	38543107	.	T	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.289;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=9.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=0.231;SOR=2.240;set=HC	GT:AD:AF:DP	0/1:120,15:0.11:135
chr7	38543371	rs6946268	C	T	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr7	38725157	rs17416951	T	G	883.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:34,36:0.51:70
chr7	38725804	rs11980087	C	T	7076.77	.	AC=1;AF=0.500;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	0/1:374,339:0.48:713
chr7	38726347	rs62442615	G	A	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-0.331;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:97,100:0.51:197
chr7	38780883	rs6951429	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	38780924	rs6975410	T	C	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	38782944	rs11971020	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,55:0.44:124
chr7	38782951	rs10254567	G	A	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:64,69:0.52:133
chr7	38796570	rs2240350	G	A	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:78,74:0.49:152
chr7	38796748	rs2392599	C	T	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	38805079	rs140853804	TC	T	185.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	38805215	rs62444122	C	T	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.061;QD=9.57;ReadPosRankSum=1.806;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:70,64:0.48:134
chr7	38810880	rs11431870	T	TA	509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=-1.386;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:18,38:0.68:56
chr7	38813711	rs976350	C	T	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	38816441	rs1468347	A	G	8728.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr7	38816487	rs4236355	G	A	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr7	38857364	rs2072248	G	A	8732.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr7	38860933	rs56002981	A	G	3597.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:181,169:0.48:350
chr7	38869708	rs7790054	C	T	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	39125413	rs1950001	T	G	7581.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr7	39243750	rs4507668	A	G	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	39243963	rs35792719	T	A	6338.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr7	39243978	rs35489214	A	G	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr7	39500352	rs885689	C	G	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	40087320	.	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.412;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr7	40229112	.	AAT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=-0.523;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:50,7:0.12:57
chr7	40234742	rs11326652	CT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=5.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-2.018;SOR=0.198;set=HC	GT:AD:AF:DP	0/1:78,26:0.25:104
chr7	40314165	rs12669315	G	A	16917.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr7	40356305	rs73135029	G	A	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:74,70:0.49:144
chr7	40356315	rs10245165	A	T	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr7	41368666	.	T	TGAAAGAAA,TGAAAGAAAGAAA	1382.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.92;QD=55.31;SOR=4.174;set=HC	GT:AD:AF:DP	1/2:0,16,9:0.64,0.36:25
chr7	41739527	rs139728345	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.71;ReadPosRankSum=-1.003;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	42064852	rs846273	C	G	4912.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	42084829	rs699493	A	G	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	42088222	rs846266	T	C	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	42187734	.	GCACACACA	G	1640.73	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;QD=34.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	42187771	.	CACACAG	C	1893	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=16;MQ=59.93;NF=14;NR=9;PP=1893;QD=82.4347826087;SC=CACACACACACACACAGCCCT;SbPval=0.22;Source=Platypus;TC=69;TCF=33;TCR=36;TR=23;WE=42187784;WS=42187761;set=Platypus	GT:AD:AF:DP	0/1:46,23:0.33:69
chr7	42212189	rs62443803	T	C	4366.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:191,213:0.53:404
chr7	42262935	rs11266806	GA	G	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.664;QD=4.17;ReadPosRankSum=-2.161;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr7	42950640	rs643138	C	T	5466.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	42951515	rs647117	G	A	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr7	42957465	rs71008875	ATT	A	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	42966284	rs76732605	G	A	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=-1.306;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:57,75:0.57:132
chr7	42970733	rs619664	C	T	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr7	42974827	rs601057	A	C	3385.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr7	42976789	rs630191	A	G	12583.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr7	42977091	rs631132	G	A	5671.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	43190479	rs12702015	T	G	2462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.289;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:111,121:0.52:232
chr7	43400656	rs368684213	CGTGT	C,CGT	1492.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-2.458;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:5,32,20:0.56,0.35:57
chr7	43484310	rs73098706	T	C	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:157,123:0.44:280
chr7	43485248	rs6960889	A	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	43495878	rs3214631	C	CT	1129.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:75,60:0.44:135
chr7	43496138	rs2304331	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:93,80:0.46:173
chr7	43506015	rs2304330	C	A	2045.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:133,105:0.44:238
chr7	43506059	rs2304329	A	G	1954.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:129,102:0.44:231
chr7	43506158	rs2304328	T	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:67,47:0.41:114
chr7	43548655	rs77786939	G	A	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:179,135:0.43:314
chr7	43548832	rs74368380	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr7	43622806	rs10251937	T	C	3300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.667;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:168,169:0.50:337
chr7	43623123	rs2241738	C	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr7	43664280	rs1044141	A	G	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	43664477	rs15866	T	C	257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-2.175;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr7	43664483	rs142415211	A	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-2.424;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:24,8:0.25:32
chr7	43684803	rs2302031	C	G	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	43687296	rs2240516	C	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr7	43810695	rs699511	A	G	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	43810764	rs699512	G	A	11049.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr7	43827414	rs849165	G	A	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	43830888	rs1802846	T	C	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=1.866;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:68,47:0.41:115
chr7	43843423	rs1131372	G	A	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:73,54:0.43:127
chr7	43846603	rs7738	A	G	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,28:0.44:63
chr7	43945982	rs200939452	G	GC	631.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	44081323	rs3099757	C	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:115,36:0.24:151
chr7	44113047	rs186243819	G	A	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:36,53:0.60:89
chr7	44145910	rs1558469	C	T	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:269,228:0.46:497
chr7	44147485	rs2537188	C	A	6818.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:244,317:0.57:561
chr7	44147567	rs58863562	C	CG	14519.73	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr7	44148388	rs2075071	C	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	44148553	rs2595701	A	G	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:227,143:0.39:370
chr7	44152119	rs11377645	A	AG	4627.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	44153082	rs67670401	G	GC	4684.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	44153115	rs34515254	G	GC	2755.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	44154865	rs5883885	A	AG	11859.73	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	44157770	rs34484835	G	GC	3591.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	44180044	rs75267165	T	A	4376.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:270,213:0.44:483
chr7	44180079	rs5883888	A	AG	7200.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr7	44180226	rs55908146	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr7	44185656	rs887688	G	T	3561.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:157,170:0.52:327
chr7	44185786	rs5883890	GC	G	1308.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,37:0.54:69
chr7	44185805	rs887687	C	G	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr7	44186322	rs139242745	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:56,64:0.53:120
chr7	44189321	rs2268574	A	G	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:176,173:0.50:349
chr7	44190468	rs2268573	T	G	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,30:0.55:55
chr7	44243953	rs1476892	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr7	44245853	rs917793	A	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr7	44250826	rs2072439	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:52,40:0.43:92
chr7	44259554	rs149624128	T	TG	4133.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	44259561	rs138799733	G	GC	4284.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	44259811	.	G	A	5963.77	.	AC=1;AF=0.500;AN=2;DP=600;set=Intersection	GT:AD:AF:DP	0/1:307,292:0.49:599
chr7	44268785	rs917791	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:80,80:0.50:160
chr7	44272314	rs5883896	G	GC	522.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	44280195	rs76144629	G	T	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr7	44281475	rs2075073	T	A	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:72,86:0.54:158
chr7	44281702	rs35663812	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr7	44282369	rs35452037	T	C	3399.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:119,147:0.55:266
chr7	44282760	rs74790674	C	T	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr7	44282868	rs11542228	A	G	4233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=-0.652;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:129,111:0.46:240
chr7	44282877	rs11542227	A	G	4281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=1.609;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:148,116:0.44:264
chr7	44282928	rs17172630	G	A	3493.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:209,174:0.45:383
chr7	44284564	rs2075069	A	G	6624.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:432,351:0.45:783
chr7	44294380	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=1;HapScore=1;MGOF=43;MMLQ=23;MQ=56.94;NF=8;NR=41;PP=2962;QD=20;SC=CCAACTACCACCATCACCAGC;SbPval=1.0;Source=Platypus;TC=69;TCF=27;TCR=42;TR=49;WE=44294397;WS=44294358;set=Platypus	GT:AD:AF:DP	1/0:20,49:0.71:69
chr7	44294388	.	AGC	A	2107	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=1;MGOF=43;MMLQ=27;MQ=56.46;NF=2;NR=10;PP=2107;QD=177.75;SC=CACCATCACCAGCACCACCAC;SbPval=0.92;Source=Platypus;TC=22;TCF=7;TCR=15;TR=12;WE=44294397;WS=44294358;set=Platypus	GT:AD:AF:DP	1/0:10,12:0.55:22
chr7	44364862	rs111242776	C	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr7	44442296	rs1473114	A	C	1747.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:89,87:0.49:176
chr7	44444122	rs11550029	G	A	6108.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:341,306:0.47:647
chr7	44530193	rs307007	T	G	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:312,239:0.43:551
chr7	44553233	rs147377945	G	A	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.278;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:46,29:0.39:75
chr7	44553238	rs217434	A	G	935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=0.616;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr7	44555406	rs10264715	G	A	1600.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:107,79:0.42:186
chr7	44555573	rs217428	T	G	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:133,136:0.51:269
chr7	44561600	rs217421	A	G	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr7	44561635	rs35349497	C	T	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chr7	44561901	rs217420	A	C	2508.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:119,115:0.49:234
chr7	44580991	rs17655652	T	C	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:94,146:0.61:240
chr7	44606098	rs6656	C	T	2873.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:105,134:0.56:239
chr7	44606217	rs217381	C	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr7	44610490	rs217376	C	T	4598.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:264,233:0.47:497
chr7	44611077	rs217375	T	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:87,82:0.49:169
chr7	44611157	rs41279636	C	T	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:136,134:0.50:270
chr7	44612347	rs217374	G	C	4598.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:281,232:0.45:513
chr7	44612454	rs217373	C	A	4622.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:181,216:0.54:397
chr7	44612753	rs217372	T	C	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr7	44613103	rs217371	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr7	44613611	rs11308115	CG	C	4527.73	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:179,149:0.45:328
chr7	44619302	rs217361	T	C	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:136,137:0.50:273
chr7	44620836	rs8580	C	A	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:71,53:0.43:124
chr7	44687175	rs113649447	C	CT	3033.73	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:197,185:0.48:382
chr7	44715476	.	C	CA	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.501;QD=1.57;ReadPosRankSum=-0.794;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr7	44735920	rs41280654	G	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:66,73:0.53:139
chr7	44736580	rs61756582	G	A	3517.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:197,171:0.46:368
chr7	44800176	rs3735478	G	T	11372.77	.	AC=1;AF=0.500;AN=2;DB;DP=1088;set=Intersection	GT:AD:AF:DP	0/1:530,555:0.51:1085
chr7	44802401	rs4720479	A	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	44836314	rs6850	A	G	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr7	44839616	rs6463247	C	T	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr7	44839996	.	G	GTTT	443.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=10.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.870;SOR=1.882;set=HC	GT:AD:AF:DP	0/1:67,22:0.25:89
chr7	44839997	rs57466816	CT	C,TT	999.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.208;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=1.487;SOR=1.037;set=HC	GT:AD:AF:DP	1/2:13,47,22:0.57,0.27:82
chr7	44869537	rs1297837	C	T	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:67,62:0.48:129
chr7	44924627	rs6966024	A	C	9425.77	.	AC=1;AF=0.500;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	0/1:445,458:0.51:903
chr7	45004063	rs7792760	T	C	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:202,150:0.43:352
chr7	45005795	rs2269969	G	A	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:132,128:0.49:260
chr7	45009341	rs3735485	A	G	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:116,67:0.37:183
chr7	45010371	rs62461372	C	G	8254.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:366,388:0.51:754
chr7	45015107	rs61738857	G	A	7201.77	.	AC=1;AF=0.500;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	0/1:369,362:0.50:731
chr7	45016621	rs61739531	C	T	4035.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:163,191:0.54:354
chr7	45104131	rs11552377	G	A	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	45109658	rs55967204	G	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:26,29:0.53:55
chr7	45110290	rs28407510	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chr7	45111482	rs1001349	A	T	14368.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr7	45112902	rs10272243	T	C	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	45114089	rs2289370	C	T	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	45120248	rs1132130	G	A	15038.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr7	45120453	rs10264280	C	T	16858.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr7	45122324	rs3735493	C	A	9373.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	45122464	rs10243185	A	C	10578.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,372:1.00:373
chr7	45122723	rs61740895	G	A	15811.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr7	45123906	.	T	G	424	.	AC=2;AF=1.00;AN=2;BRF=0.44;FR=1.0000;HP=2;HapScore=2;MGOF=50;MMLQ=23;MQ=40.01;NF=17;NR=5;PP=424;QD=20.853236934;SC=TGGGACACAATCGTGGCTGCA;SbPval=0.59;Source=Platypus;TC=26;TCF=20;TCR=6;TR=22;WE=45123914;WS=45123896;set=Platypus	GT:AD:AF:DP	1/1:4,22:0.85:26
chr7	45123925	.	C	T	882	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=3;HapScore=1;MGOF=26;MMLQ=24;MQ=48.06;NF=28;NR=15;PP=882;QD=21.3202607569;SC=CAGCCACAGGCTTTGGGGCTG;SbPval=0.49;Source=Platypus;TC=45;TCF=30;TCR=15;TR=43;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	1/1:2,43:0.96:45
chr7	45123937	.	T	C	1135	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=1;MGOF=26;MMLQ=23;MQ=51.87;NF=35;NR=22;PP=1135;QD=20.5223019745;SC=TTGGGGCTGATGAGAGATCTG;SbPval=0.52;Source=Platypus;TC=60;TCF=37;TCR=23;TR=57;WE=45123945;WS=45123915;set=Platypus	GT:AD:AF:DP	1/1:3,57:0.95:60
chr7	45124008	rs7777835	T	C	6173.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	45124286	rs3735494	A	G	11885.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr7	45124465	rs3735495	A	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr7	45125775	rs9791417	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	45139892	rs4553	G	A	7721.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr7	45139919	rs2289373	A	C	10652.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr7	45142834	rs2289374	G	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	45143090	rs59494919	G	GGACAGCC	3383.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	45143093	.	C	G	3256.77	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	45143108	rs2119056	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	45144403	rs2289375	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	45144494	rs2289376	T	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	45216761	rs1294940	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,76:0.48:157
chr7	45217015	rs2074654	T	C	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:217,169:0.44:386
chr7	45223018	rs11982639	C	G	5228.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:230,244:0.51:474
chr7	45225609	rs66534022	GGTGTATGT	G	1949.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,52:0.53:99
chr7	45225638	.	ATGTGTGTG	A	2023	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=13;MMLQ=23;MQ=60.4;NF=10;NR=17;PP=2023;QD=75.2962962963;SC=GTATGTGTGTATGTGTGTGAG;SbPval=0.78;Source=Platypus;TC=85;TCF=37;TCR=48;TR=27;WE=45225653;WS=45225628;set=Platypus	GT:AD:AF:DP	1/0:58,27:0.32:85
chr7	45225708	rs13222185	A	G	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:130,116:0.47:246
chr7	45225838	rs11767359	AA	TC	4878.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;JOINED;set=Intersection	GT:AD:AF:DP	0/1:151,128:0.46:279
chr7	45225854	rs11767365	A	G	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:125,122:0.49:247
chr7	45225956	rs71548262	A	G	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr7	45225986	rs67307920	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr7	45697295	rs2461131	C	G	3724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=0.003;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:88,98:0.53:186
chr7	45697295	.	CCT	GCC	2677	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=54;NR=25;PP=2677;QD=20;SC=CAAGGTGGGCCCTAGCCCCAC;SbPval=0.43;Source=Platypus;TC=162;TCF=114;TCR=48;TR=79;WE=45697305;WS=45697285;set=Platypus	GT:AD:AF:DP	0/1:83,79:0.49:162
chr7	45697297	rs2471231	T	C	2098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=0.246;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:90,95:0.51:185
chr7	45703971	rs1042009	G	A	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,124:0.50:250
chr7	45743128	rs2247685	T	G	10766.77	.	AC=1;AF=0.500;AN=2;DB;DP=1168;set=Intersection	GT:AD:AF:DP	0/1:611,553:0.48:1164
chr7	45743403	rs2461114	G	A	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr7	45744055	rs2272036	C	T	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.306;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:72,72:0.50:144
chr7	45747933	rs2280497	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,77:0.58:132
chr7	45753239	rs2293107	A	G	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:50,57:0.53:107
chr7	45753324	rs2293106	G	A	3829.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:196,184:0.48:380
chr7	45767682	rs59412459	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr7	45954465	rs145188037	G	A	5154.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:276,250:0.48:526
chr7	45954679	rs34091405	AAC	A	1094.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr7	45954692	rs10255707	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	45957055	rs2471551	G	C	1255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=1.283;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:53,62:0.54:115
chr7	45957172	rs55719014	TA	T	102.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	45960323	rs6950868	C	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	45960645	rs2854746	G	C	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:61,76:0.55:137
chr7	46728937	rs1404727	T	C	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:146,128:0.47:274
chr7	46732428	rs700747	A	G	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	46732627	rs1917602	A	T	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,30:0.51:59
chr7	46736733	rs71003346	GA	G	1060.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	46736788	rs144623777	T	TA	323.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=9.020;MLEAC=1;MLEAF=0.500;MQ=63.34;MQRankSum=4.139;QD=8.09;ReadPosRankSum=2.978;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr7	46736789	rs115328936	T	A	536.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=9.020;MLEAC=1;MLEAF=0.500;MQ=63.34;MQRankSum=4.139;QD=13.42;ReadPosRankSum=2.800;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr7	47319723	rs4720590	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	47323456	rs3750164	A	G	10859.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr7	47336893	rs5883997	C	CT	972.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr7	47408029	rs2255744	A	G	7546.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr7	47408974	rs1534136	T	A	13545.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr7	47436497	rs17544028	G	A	2410.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:111,111:0.50:222
chr7	47436558	rs2177795	A	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	47451295	rs834607	A	G	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	47451572	rs17544073	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr7	47463842	rs834599	T	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:37,64:0.63:101
chr7	47467864	rs1799370	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr7	47479363	rs1810137	A	G	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr7	47481602	rs11763044	G	A	5288.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:270,265:0.50:535
chr7	47481786	rs1620852	A	T	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:19,26:0.58:45
chr7	47546375	rs334496	C	T	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	47546466	rs73095186	G	A	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,52:0.46:114
chr7	47546547	rs334497	G	A	2463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.557;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.65;ReadPosRankSum=-0.041;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:21,127:0.86:148
chr7	47578772	rs334506	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	47698685	rs12531737	A	G	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:110,140:0.56:250
chr7	47840084	rs3734933	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr7	47840510	rs1466203	T	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr7	47842749	rs3832463	C	CAA	2319.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:68,61:0.47:129
chr7	47853413	rs6944477	A	G	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	47853498	rs6463449	C	T	12176.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr7	47876567	rs17131842	G	A	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	47878993	rs6960394	C	T	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr7	47884829	rs1980279	C	A	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	47886707	rs10280228	G	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	47905044	rs7782964	T	C	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	47913459	rs62447062	T	C	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	47913560	rs78833972	G	T	12215.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr7	47913579	rs1470859	TG	CA	20910.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr7	47913615	rs17131867	G	A	10894.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr7	47913737	rs73105163	A	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	47915651	rs4724654	G	C	9311.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	47915677	rs4724655	A	G	11350.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr7	47915890	rs4724656	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	47916995	rs2348662	T	C	877.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	47920225	rs17131893	G	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	47920298	rs17131896	G	C	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	47920345	rs62447081	G	A	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	47920450	rs17131899	A	G	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	47920482	rs78574665	AG	GT	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	47920499	rs62447082	A	G	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	47920583	rs9691249	G	C	257.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	47921682	rs10951936	A	T	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:53,68:0.56:121
chr7	47924454	rs10464386	G	A	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr7	47925331	rs10274334	C	G	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:111,118:0.52:229
chr7	47943953	rs11766212	C	T	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:96,113:0.54:209
chr7	47947863	rs1474283	T	C	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.54;ReadPosRankSum=-0.099;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:36,61:0.63:97
chr7	47968927	rs2686817	C	A	5446.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:360,273:0.43:633
chr7	47971575	rs885337	A	G	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:91,88:0.49:179
chr7	47971626	rs885338	G	A	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=-0.427;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:134,119:0.47:253
chr7	47976287	rs2708878	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr7	47979716	rs62447089	A	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=1.001;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:71,50:0.41:121
chr7	47979922	rs2708913	A	G	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.874;QD=5.60;ReadPosRankSum=-0.175;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:76,60:0.44:136
chr7	48004962	rs1056663	C	T	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:106,132:0.55:238
chr7	48005122	rs2037483	G	A	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr7	48008738	rs3176581	A	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr7	48009018	rs953595	AA	GT	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	0/1:58,52:0.47:110
chr7	48010978	rs2708864	T	C	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	48016442	rs2307252	G	A	2407.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:125,112:0.47:237
chr7	48017965	rs2242477	C	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr7	48017989	rs2242478	T	C	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,56:0.58:96
chr7	48018455	rs2242479	T	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:72,83:0.54:155
chr7	48028512	rs3736547	G	C	3053.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:157,150:0.49:307
chr7	48035532	rs36076226	CTT	C	346.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr7	48035893	rs2708899	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr7	48058219	.	CA	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-1.418;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr7	48086077	rs2708912	C	T	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:98,100:0.51:198
chr7	48086161	rs10233232	T	C	3609.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:157,181:0.54:338
chr7	48089394	rs909059	T	C	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:183,179:0.49:362
chr7	48089542	rs2686788	T	C	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:180,161:0.47:341
chr7	48089571	rs2708890	C	A	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:119,115:0.49:234
chr7	48092486	rs2686791	T	C	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:131,99:0.43:230
chr7	48092847	rs2686792	C	A	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	48211301	rs141832114	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	48237802	rs2188	C	T	4704.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	48266842	rs150972279	A	AT	3275.73	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:178,187:0.51:365
chr7	48269679	rs60553397	G	C	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	48273869	rs7357106	T	C	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr7	48285485	rs1880738	C	T	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:169,155:0.48:324
chr7	48312674	rs1358066	G	A	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:136,128:0.48:264
chr7	48313510	rs17547830	A	G	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:75,81:0.52:156
chr7	48314798	rs13233225	G	T	5016.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:291,252:0.46:543
chr7	48315796	rs1880736	C	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,51:0.44:115
chr7	48315930	rs74859514	G	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:70,74:0.51:144
chr7	48317683	rs10246853	A	T	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	48318811	rs2222648	C	T	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	48335265	rs10280046	C	T	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,36:0.54:67
chr7	48336844	rs6583546	C	T	2676.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:143,131:0.48:274
chr7	48349647	rs3931814	C	T	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:121,111:0.48:232
chr7	48352570	rs56322731	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:39,28:0.42:67
chr7	48391642	rs4145714	G	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr7	48412112	rs11357239	TA	T	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.784;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.838;QD=5.45;ReadPosRankSum=1.486;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:29,40:0.58:69
chr7	48415892	rs2163938	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr7	48428715	rs17132289	A	T	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:171,187:0.52:358
chr7	48431389	rs113609560	T	TA	425.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,23:0.52:44
chr7	48431762	rs7780299	C	T	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr7	48443570	rs6978753	G	A	4748.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	48450097	rs62447267	C	T	14596.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr7	48450157	rs17548783	T	C	24370.77	.	AC=2;AF=1.00;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	1/1:0,944:1.00:944
chr7	48450289	rs62447268	C	G	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr7	48451939	rs1865195	T	C	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	48452200	rs7789493	G	A	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	48467355	rs13233421	T	C	2269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=4.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=0.183;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:105,110:0.51:215
chr7	48467581	rs13243091	T	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:82,74:0.47:156
chr7	48467634	rs34541457	T	C	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr7	48467653	rs34529024	GAA	G	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	48506416	rs4917151	G	C	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr7	48506440	rs77926607	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr7	48522769	rs59521533	A	AT	1836.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:99,103:0.51:202
chr7	48522845	rs1918584	C	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.107;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr7	48522845	.	CA	GG	763	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=28;MQ=60.0;NF=3;NR=17;PP=763;QD=40.8233937431;SC=GCACAGGGTTCAGAAGGACCA;SbPval=0.78;Source=Platypus;TC=59;TCF=12;TCR=47;TR=20;WE=48522854;WS=48522835;set=Platypus	GT:AD:AF:DP	0/1:39,20:0.34:59
chr7	48522846	rs1918585	A	G	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=0.093;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr7	48545976	rs6583448	A	G	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	48546011	rs12669976	T	C	3040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=0.759;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:162,158:0.49:320
chr7	48563752	rs11185607	A	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	48568043	rs1316349	C	A	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:132,137:0.51:269
chr7	48634168	rs55735040	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr7	48634295	rs55974693	C	A	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:115,96:0.45:211
chr7	48654769	rs10046546	A	G	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:104,77:0.43:181
chr7	48684185	rs150970044	CTT	C	528.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=1.195;SOR=0.160;set=HC	GT:AD:AF:DP	1/1:8,22:0.73:30
chr7	48886140	rs62454384	T	C	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.38;QD=28.83;SOR=1.540;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	48886193	rs3814470	G	A	1799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.135;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-2.285;QD=7.17;ReadPosRankSum=-2.256;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:158,93:0.37:251
chr7	48886383	rs146940015	G	T	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.50;QD=29.68;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	48886487	rs62454385	T	C	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.06;QD=27.19;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	48886648	rs71537796	G	A	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.76;QD=29.04;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	48886746	rs4320498	C	T	9491.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr7	48886783	rs62454386	G	A	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:269,191:0.42:460
chr7	48887548	rs4404869	G	C	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	48964172	rs6945680	G	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr7	48964209	rs58317831	TG	T	1746.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr7	48964255	rs6968293	A	C	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:97,106:0.52:203
chr7	48964322	rs11767646	G	T	4232.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:186,190:0.51:376
chr7	48965000	rs10259692	G	A	4133.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:189,179:0.49:368
chr7	48965141	rs62456439	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.417;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=12.467;MLEAC=1;MLEAF=0.500;MQ=46.19;MQRankSum=-0.155;QD=0.26;ReadPosRankSum=-0.591;SOR=1.165;set=HC	GT:AD:AF:DP	0/1:209,32:0.13:241
chr7	48965427	rs145470654	A	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.412;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=16.813;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-13.988;QD=1.52;ReadPosRankSum=-6.682;SOR=2.237;set=HC	GT:AD:AF:DP	0/1:377,62:0.14:439
chr7	49814998	.	CCCCG	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=11.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=2.093;SOR=0.010;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr7	49951519	.	G	GCACACACACACACA	118	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=23;MQ=60.33;NF=6;NR=4;PP=118;QD=12.2;SC=ACAAATACACGCACACACACA;SbPval=0.6;Source=Platypus;TC=35;TCF=21;TCR=14;TR=10;WE=49951528;WS=49951509;set=Platypus	GT:AD:AF:DP	1/0:25,10:0.29:35
chr7	49951544	rs7792519	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;MQ=60.27;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr7	50023122	rs988392	C	T	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr7	50070921	rs1351691	C	G	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	50121269	rs3807322	G	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr7	50135632	rs62447817	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,27:0.44:61
chr7	50144059	rs3034461	T	TTA	2994.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr7	50156916	rs6959792	C	G	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	50169508	rs1456900	G	A	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	50169595	rs1456899	T	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	50173777	rs998928	A	G	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=-0.182;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:158,138:0.47:296
chr7	50175654	rs12718244	G	A	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:95,84:0.47:179
chr7	50175681	rs12672941	C	T	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr7	50179809	rs199591965	T	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr7	50180972	rs1456908	C	T	6607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=0.918;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:311,329:0.51:640
chr7	50191216	rs10260654	G	T	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:217,224:0.51:441
chr7	50198626	rs4917120	T	C	9377.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:2,348:0.99:350
chr7	50435617	rs11766800	A	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr7	50436033	rs10899750	A	G	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:100,118:0.54:218
chr7	50512857	rs10230307	C	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	50512929	rs10230343	C	A	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:55,76:0.58:131
chr7	50537677	rs11378977	C	CA	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.526;QD=5.01;ReadPosRankSum=0.945;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chr7	50537983	rs3757472	A	C	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr7	50544269	rs5884156	AG	A	1456.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:63,46:0.42:109
chr7	50545191	rs4992502	C	A	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:88,82:0.48:170
chr7	50547584	rs11575457	A	C	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr7	50547661	rs11575456	AGCCCT	A	805.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr7	50566762	rs2876829	C	T	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:91,61:0.40:152
chr7	50571779	rs11575375	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,69:0.50:139
chr7	50596864	rs3735273	C	T	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr7	50597056	rs6950777	G	A	2744.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:172,132:0.43:304
chr7	50611735	rs6264	T	C	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	50663299	.	T	TACACACACAC,TACACACACACAC	540.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=35;set=Intersection	GT:AF:DP	1/1:1.00:12
chr7	50671481	rs7456867	C	G	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	50672907	rs4947709	T	C	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	50673029	rs4947710	T	C	11109.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr7	50685602	rs11770199	T	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	50685625	rs2240498	A	C	2972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.04;ReadPosRankSum=-0.718;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:1,105:0.99:106
chr7	50694457	rs1468450	A	G	2596.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	50742118	rs2715128	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	50742180	rs1800504	C	T	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	50799889	rs2074777	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	50800100	.	G	GA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.697;QD=1.02;ReadPosRankSum=-1.451;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:182,52:0.22:234
chr7	50800169	rs2108350	T	C	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	51085127	rs3214180	A	AT	6851.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr7	51093013	rs2240087	A	T	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	51096036	rs2240089	G	C	7120.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:303,330:0.52:633
chr7	51096974	rs2240090	C	T	11436.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr7	51097063	rs10230120	T	G	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr7	51098453	rs190516792	T	C	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:107,100:0.48:207
chr7	51098567	rs142060269	GTCT	G	14737.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr7	51153024	rs59837144	GTACAATCAAAGTACTTTGTACCTATGAAGT	GACAATCAAAGTACTTTGTACCTATGAAGT,G	2283.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=154;set=Intersection	GT:AF:DP	0/1:0.44:139
chr7	51153027	.	CAATCAAAGTACTTTGTACCTATGAAGTACAAAGA	C	2259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.145;QD=16.26;ReadPosRankSum=-0.109;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:78,61:0.44:139
chr7	51153056	.	CAAAGA	C	2943	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=4;HapScore=1;MGOF=0;MMLQ=28;MQ=57.67;NF=4;NR=20;PP=2943;QD=20;SC=CTATGAAGTACAAAGAAGGCA;SbPval=0.44;Source=Platypus;TC=57;TCF=8;TCR=49;TR=24;WE=51153069;WS=51153014;set=Platypus	GT:AD:AF:DP	1/0:33,24:0.42:57
chr7	51287470	rs801142	A	G	10388.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:1,412:1.00:413
chr7	53103371	rs72598684	G	T	3673.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:112,161:0.59:273
chr7	53103382	rs72598685	G	T	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:133,182:0.58:315
chr7	53103425	rs10229800	C	A	5584.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:291,273:0.48:564
chr7	53103673	rs1184320	C	A	3641.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:194,176:0.48:370
chr7	53103794	rs73357087	C	T	3729.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:207,177:0.46:384
chr7	53104078	rs72598686	G	A	7198.77	.	AC=1;AF=0.500;AN=2;DB;DP=776;set=Intersection	GT:AD:AF:DP	0/1:419,356:0.46:775
chr7	53930533	.	A	G	1219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.287;ClippingRankSum=0.000;DP=393;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=1.080;QD=3.11;ReadPosRankSum=0.071;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:305,87:0.22:392
chr7	54610293	rs513529	A	G	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,25:0.50:50
chr7	54610654	rs538207	T	A	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:65,64:0.50:129
chr7	54614698	rs11432820	C	CG	16864.73	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:2,635:1.00:637
chr7	54618010	rs2293343	C	T	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	54621526	rs662136	T	C	9130.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	54820186	rs6952793	A	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr7	54823677	rs3834332	TC	T	605.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr7	54825019	rs2256906	C	T	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	54826830	rs2699226	G	C	5687.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:406,295:0.42:701
chr7	55002836	rs35747839	G	GA	2566.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:58,64:0.52:122
chr7	55002841	rs2330916	T	G	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:64,71:0.53:135
chr7	55004546	rs2005868	C	T	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:96,124:0.56:220
chr7	55086780	rs712830	A	C	67031.77	.	AC=2;AF=1.00;AN=2;DB;DP=2269;set=Intersection	GT:AD:AF:DP	1/1:0,2263:1.00:2263
chr7	55214348	rs2072454	C	T	441840.77	.	AC=2;AF=1.00;AN=2;DB;DP=16871;set=Intersection	GT:AD:AF:DP	1/1:7,16786:1.00:16793
chr7	55218903	rs2075109	T	C	145361.77	.	AC=2;AF=1.00;AN=2;DB;DP=5465;set=Intersection	GT:AD:AF:DP	1/1:2,5430:1.00:5432
chr7	55219159	rs2075110	C	T	50881.77	.	AC=2;AF=1.00;AN=2;DB;DP=1739;set=Intersection	GT:AD:AF:DP	1/1:0,1733:1.00:1733
chr7	55220177	rs11506105	A	G	326301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12626;set=Intersection	GT:AD:AF:DP	1/1:10,12559:1.00:12569
chr7	55259450	rs2229066	C	T	279529.77	.	AC=2;AF=1.00;AN=2;DB;DP=11157;set=Intersection	GT:AD:AF:DP	1/1:166,10927:0.99:11093
chr7	55266417	rs1140475	T	C	433438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16786;set=Intersection	GT:AD:AF:DP	1/1:6,16713:1.00:16719
chr7	55272826	rs2692456	G	A	88181.77	.	AC=2;AF=1.00;AN=2;DB;DP=2984;set=Intersection	GT:AD:AF:DP	1/1:0,2977:1.00:2977
chr7	55459563	rs2049497	A	G	232352.77	.	AC=2;AF=1.00;AN=2;DB;DP=9381;set=Intersection	GT:AD:AF:DP	1/1:144,9190:0.98:9334
chr7	55468773	rs815929	C	A	30696.77	.	AC=2;AF=1.00;AN=2;DB;DP=1087;set=Intersection	GT:AD:AF:DP	1/1:0,1080:1.00:1080
chr7	55495987	rs2272227	T	C	134600.77	.	AC=2;AF=1.00;AN=2;DB;DP=5218;set=Intersection	GT:AD:AF:DP	1/1:81,5118:0.98:5199
chr7	55498755	rs2293322	G	A	25648.77	.	AC=2;AF=1.00;AN=2;DB;DP=879;set=Intersection	GT:AD:AF:DP	1/1:15,862:0.98:877
chr7	55499058	rs815988	A	G	77085.77	.	AC=2;AF=1.00;AN=2;DB;DP=2847;set=Intersection	GT:AD:AF:DP	1/1:1,2827:1.00:2828
chr7	55540707	rs815957	G	A	296545.77	.	AC=2;AF=1.00;AN=2;DB;DP=11549;set=Intersection	GT:AD:AF:DP	1/1:223,11301:0.98:11524
chr7	55540791	rs712819	G	C	224957.77	.	AC=2;AF=1.00;AN=2;DB;DP=8195;set=Intersection	GT:AD:AF:DP	1/1:1,8173:1.00:8174
chr7	55560207	rs815951	C	T	229699.77	.	AC=2;AF=1.00;AN=2;DB;DP=8675;set=Intersection	GT:AD:AF:DP	1/1:149,8496:0.98:8645
chr7	55565247	.	TGGGG	T,TG	29448.73	.	AC=1,1;AF=0.500,0.500;AN=2;ClippingRankSum=0.000;DP=1050;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.188;QD=35.44;SOR=4.207;set=HC	GT:AD:AF:DP	1/2:13,294,524:0.35,0.63:831
chr7	55606508	.	TA	T	2286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DP=2018;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-16.121;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:1050,412:0.28:1462
chr7	55750390	rs11238374	A	G	119557.77	.	AC=2;AF=1.00;AN=2;DB;DP=4492;set=Intersection	GT:AD:AF:DP	1/1:0,4482:1.00:4482
chr7	55774755	rs112151645	A	G	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr7	55774888	rs12666519	C	T	8423.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:246,384:0.61:630
chr7	55779103	rs28695422	C	T	5104.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:221,252:0.53:473
chr7	55779220	rs12536949	A	G	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.97;QD=30.27;SOR=2.278;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	55780176	rs10267547	T	C	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr7	55780845	rs77949648	T	C	9673.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.04;QD=26.72;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr7	55832361	rs28670923	T	C	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr7	55832429	rs146909187	G	GT	575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.383;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-1.714;QD=3.08;ReadPosRankSum=2.036;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:126,61:0.33:187
chr7	55832454	rs4388410	A	G	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:99,188:0.66:287
chr7	55832480	rs4577914	T	C	4998.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:146,255:0.64:401
chr7	55912185	rs4294144	C	T	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:53,96:0.64:149
chr7	55991292	rs2174460	G	A	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	56022981	rs15892	T	C	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	56047572	rs60160896	C	T	2545.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:265,139:0.34:404
chr7	56047612	rs71543773	G	A	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:63,124:0.66:187
chr7	56049720	rs6947109	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr7	56049990	rs66485869	A	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	56051672	rs150298305	T	TTATATGTATA	551.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	56059458	rs11562101	A	T	4115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.216;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=12.065;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.96;ReadPosRankSum=4.590;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:139,205:0.60:344
chr7	56059591	rs10435504	G	C	20744.77	.	AC=2;AF=1.00;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	1/1:1,789:1.00:790
chr7	56062432	rs71015151	CTT	C	1171.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr7	56087206	rs75045388	A	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.318;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=7.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-2.016;SOR=1.801;set=HC	GT:AD:AF:DP	0/1:109,21:0.16:130
chr7	56087215	.	G	C	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.085;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:126,24:0.16:150
chr7	56087219	.	A	C	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.723;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=4.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.220;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:130,26:0.17:156
chr7	56087232	.	T	C	890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=1.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.298;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:151,30:0.17:181
chr7	56087233	.	G	A	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.685;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.762;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:151,32:0.17:183
chr7	56087240	.	T	C	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=0.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-0.344;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:160,35:0.18:195
chr7	56087241	.	G	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-0.496;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:164,37:0.18:201
chr7	56087278	rs199535022	C	A	2221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=1.198;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:290,73:0.20:363
chr7	56087280	rs200789478	G	C	2412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.993;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=1.631;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:312,76:0.20:388
chr7	56087283	rs201406771	T	C	2481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.972;QD=6.24;ReadPosRankSum=1.101;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:317,81:0.20:398
chr7	56087291	rs139106189	AC	A	2821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.704;QD=6.66;ReadPosRankSum=0.403;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:333,91:0.21:424
chr7	56087300	rs75395437	C	T	3054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.670;QD=6.76;ReadPosRankSum=0.485;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:353,99:0.22:452
chr7	56087319	rs73343757	T	G	3648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=534;ExcessHet=3.0103;FS=0.615;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-3.022;QD=6.90;ReadPosRankSum=-0.756;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:398,131:0.25:529
chr7	56087364	rs201644817	GA	TG	6250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=591;ExcessHet=3.0103;FS=0.563;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-3.404;QD=10.63;ReadPosRankSum=-0.171;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:410,178:0.30:588
chr7	56087374	rs200442078	C	T	6204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.402;QD=10.87;ReadPosRankSum=0.962;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:398,173:0.30:571
chr7	56087379	rs201935398	T	C	6140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.264;QD=11.00;ReadPosRankSum=-0.023;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:379,179:0.32:558
chr7	56087399	rs79321413	G	A	5412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-3.281;QD=11.28;ReadPosRankSum=2.261;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:327,153:0.32:480
chr7	56087409	rs74874687	G	A	4640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.147;QD=11.02;ReadPosRankSum=1.500;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:279,142:0.34:421
chr7	56087423	rs79451216	G	A	4295.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:232,122:0.34:354
chr7	56087465	rs77534057	G	A	2563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.546;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=9.446;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-3.911;QD=12.63;ReadPosRankSum=-1.024;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:126,77:0.38:203
chr7	56087474	rs77874436	A	G	2403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.369;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=11.068;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-3.937;QD=13.98;ReadPosRankSum=-1.325;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:107,65:0.38:172
chr7	56087504	rs76724548	G	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.257;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.61;MQRankSum=-4.108;QD=10.34;ReadPosRankSum=0.485;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:61,27:0.31:88
chr7	56087508	rs75713723	G	A	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-4.055;QD=10.64;ReadPosRankSum=0.359;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:57,26:0.31:83
chr7	56087533	.	C	A	436.77	.	AC=1;AF=0.500;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr7	56088780	rs75497420	G	A	12013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=1625;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.772;QD=8.03;ReadPosRankSum=-0.738;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:1135,361:0.24:1496
chr7	56088786	rs202027697	A	T	12084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DB;DP=1637;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-2.489;QD=7.99;ReadPosRankSum=1.056;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1143,369:0.24:1512
chr7	56088789	rs199851385	G	A	12144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.829;ClippingRankSum=0.000;DB;DP=1629;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.450;QD=8.07;ReadPosRankSum=1.259;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:1129,376:0.25:1505
chr7	56088811	rs78599516	T	C	6665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.552;ClippingRankSum=0.000;DB;DP=1510;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-3.705;QD=4.72;ReadPosRankSum=3.530;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:1035,378:0.27:1413
chr7	56088825	rs74445297	T	A	5967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.621;ClippingRankSum=0.000;DB;DP=1383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.040;QD=4.61;ReadPosRankSum=3.547;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:946,349:0.27:1295
chr7	56088902	rs77329757	C	T	3768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-4.268;QD=7.71;ReadPosRankSum=0.693;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:367,122:0.25:489
chr7	56088907	rs201445503	GC	CT	3624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.903;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=4.703;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-4.290;QD=8.09;ReadPosRankSum=0.754;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:337,111:0.25:448
chr7	56088928	rs200942360	C	T	2108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.186;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=8.366;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-2.858;QD=7.78;ReadPosRankSum=-0.558;SOR=1.760;set=HC	GT:AD:AF:DP	0/1:198,73:0.27:271
chr7	56088931	.	G	GA	2066.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-2.806;QD=8.54;ReadPosRankSum=-1.151;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:175,67:0.28:242
chr7	56119730	rs3735665	T	A	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=1.130;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	56119836	rs7780755	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr7	56122058	rs6593297	A	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;MQ=55.85;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	56126360	rs2230197	T	C	17799.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,690:1.00:690
chr7	56136260	rs4245575	C	A	15727.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:3,605:1.00:608
chr7	56140548	rs76519777	T	C	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr7	56140618	rs13238899	T	G	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:96,173:0.64:269
chr7	56142519	rs4948104	A	G	6601.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	56146004	rs3735066	G	A	2509.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:78,114:0.59:192
chr7	56146737	rs13226699	G	A	3067.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:77,141:0.65:218
chr7	56149475	rs199775883	G	GGC,GGCAGGT	12229.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=529;set=Intersection	GT:AF:DP	0/1:0.55:525
chr7	56149476	.	AA	CC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=59.94;NF=94;NR=60;PP=2944;QD=20;SC=GGGAACCGAGAATGTCAAGGC;SbPval=0.64;Source=Platypus;TC=428;TCF=253;TCR=175;TR=154;WE=56149485;WS=56149464;set=Platypus	GT:AD:AF:DP	0/1:274,154:0.36:428
chr7	56149476	.	A	AGGTC	6803.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.644;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=1.268;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:240,291:0.55:531
chr7	56149477	rs199778139	A	C	12462.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.817;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.91;ReadPosRankSum=2.070;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:239,305:0.56:544
chr7	56149847	rs17172508	C	T	8358.77	.	AC=1;AF=0.500;AN=2;DB;DP=1291;set=Intersection	GT:AD:AF:DP	0/1:821,466:0.36:1287
chr7	56149939	rs13238521	G	A	4946.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:158,213:0.57:371
chr7	56151489	rs2242508	A	G	3420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.436;ClippingRankSum=0.000;DB;DP=868;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.673;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:640,227:0.26:867
chr7	56151816	rs2242510	C	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:54,99:0.65:153
chr7	56155219	rs6945795	C	T	2198.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr7	56171760	rs6593298	A	C	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:60,37:0.38:97
chr7	56174115	rs10043	A	C	11155.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr7	56174140	rs816407	G	T	13386.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr7	56717637	rs1906630	T	A	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:360,153:0.30:513
chr7	56717788	rs1849659	A	G	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:220,113:0.34:333
chr7	57069658	rs28369429	G	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.29;QD=30.99;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	57069669	rs1467279	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.63;QD=30.66;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	57069935	rs1966122	G	C	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	57071540	rs28370313	A	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=22.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	57071650	.	G	GAGCAGCAGCAGC	2772.73	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	57071671	rs187876791	T	C	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	57071725	rs62463099	C	T	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.02;QD=26.21;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr7	57188016	rs78588121	A	G	19472.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:2,764:1.00:766
chr7	57188718	rs62464802	T	C	25996.77	.	AC=2;AF=1.00;AN=2;DB;DP=989;set=Intersection	GT:AD:AF:DP	1/1:0,987:1.00:987
chr7	57233554	rs34820155	G	C	13215.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr7	57245247	rs11763159	A	G	12483.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr7	57528997	rs10272498	T	C	6413.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	0/1:572,335:0.37:907
chr7	57529392	rs13235676	A	C	6527.77	.	AC=1;AF=0.500;AN=2;DB;DP=1149;set=Intersection	GT:AD:AF:DP	0/1:774,374:0.33:1148
chr7	63033167	.	T	TGAGGAG	4428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=1.276;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-3.217;QD=25.75;ReadPosRankSum=3.560;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:61,111:0.65:172
chr7	63033229	.	T	TACGGCCCCCGGCGCC	2526.73	.	AC=1;AF=0.500;AN=2;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,52:0.35:150
chr7	63033298	.	C	CGCT	6678.73	.	AC=1;AF=0.500;AN=2;DP=524;set=Intersection	GT:AD:AF:DP	0/1:151,293:0.66:444
chr7	63033831	rs200697319	C	T	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr7	63529956	rs4349869	G	A	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	63537638	rs34875861	CT	C	780.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=1.936;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:9,54:0.86:63
chr7	63537849	rs4717170	G	A	11267.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr7	63673608	rs10252019	C	T	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	63679733	rs10270226	A	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	63680098	rs4479992	CC	TA	12496.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;JOINED;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	63721420	rs17767341	A	G	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	63774584	rs812337	G	T	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	64152353	rs4718101	A	G	15927.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.28;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,606:1.00:606
chr7	64166642	rs35661712	T	TG	1753.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	64168806	rs4718103	T	C	9075.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	64169019	rs4717205	G	A	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:37,213:0.85:250
chr7	64169061	rs4717206	G	A	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:37,137:0.79:174
chr7	64254791	rs10949938	G	T	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr7	64254901	rs11983033	T	C	15033.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr7	64275284	rs7809431	C	T	11595.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:14,448:0.97:462
chr7	64275470	.	A	AT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=1.645;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.143;QD=0.43;ReadPosRankSum=-0.021;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr7	64275548	rs10236928	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	64276089	rs9654821	A	G	8601.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:1,320:1.00:321
chr7	64291225	rs6460193	G	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	64291244	rs7787287	T	C	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	64291267	rs6460194	A	T	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.01;SOR=1.496;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	64291333	rs4483043	T	A	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr7	64291991	rs4236203	T	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	64312707	rs7804955	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	64437406	rs4607487	A	G	9296.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr7	64437648	rs10949955	G	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	64438403	rs4718175	G	A	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	64438667	rs1404453	G	A	11491.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr7	64439613	rs3807068	T	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	64439701	rs3807069	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	64439938	rs1852016	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	64451558	rs11771269	G	A	5936.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	64451656	rs4718177	G	A	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr7	64451699	rs4717229	T	C	6184.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	64451963	rs4618579	T	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	64453136	rs6460219	G	A	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	64498782	rs34438629	G	T	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	64535312	rs71533998	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	64535417	rs1852024	T	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.97;QD=23.63;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	64535529	rs5001356	C	T	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	64639752	rs201003787	A	T	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.498;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=10.408;MLEAC=1;MLEAF=0.500;MQ=47.24;MQRankSum=-4.235;QD=4.04;ReadPosRankSum=2.570;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:278,113:0.29:391
chr7	64639915	rs368760026	AC	A	639.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:80,39:0.33:119
chr7	64639920	rs73699606	C	T	1450.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:48,75:0.61:123
chr7	64639926	rs80126668	C	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,41:0.38:107
chr7	64639965	rs113933022	G	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr7	64670116	rs141830477	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.31;QD=25.24;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	64852790	.	TTG	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DP=321;ExcessHet=3.0103;FS=4.424;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.985;QD=0.58;ReadPosRankSum=0.653;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:274,34:0.11:308
chr7	65084152	rs6978207	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	65150824	rs202004878	C	CCG	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.59;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	65157864	rs2671990	T	C	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.526;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-0.867;QD=7.54;ReadPosRankSum=-2.333;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr7	65159983	rs147104756	A	G	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.52;QD=25.63;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	65220463	rs4718275	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	65220697	rs4718276	G	A	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	65426054	.	CA	C	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=0.875;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:47,28:0.37:75
chr7	65440835	rs112120049	CA	C	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=4.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.254;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr7	65541185	rs1183245	C	T	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	65541307	rs1144895	C	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	65551931	rs313830	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	65552230	rs60878697	CGT	C	532.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,32:0.32:101
chr7	65552497	rs313829	A	G	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	65552614	rs313828	T	C	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	65554352	rs160647	C	T	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	65554385	rs2460432	C	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	65556936	rs1167406	G	C	3661.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	65599246	rs5884583	CT	C	498.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=-2.824;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:5,36:0.88:41
chr7	65599446	rs6958484	G	A	157.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	66094008	rs35526611	C	T	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	66098482	rs3764903	G	A	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	66147057	rs1882655	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	66147101	rs2420827	G	A	3001.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	66147110	rs3800823	C	A	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	66147149	rs3800822	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	66147178	rs3800820	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	66147656	rs2003301	G	C	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	66147697	rs5884599	A	AG	3933.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=33.62;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	66147746	rs2003300	C	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	66273777	rs117698657	C	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	66463938	rs11547292	G	A	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	66474559	rs4717339	G	C	4435.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=25.49;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	66474695	rs4717340	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.09;QD=28.97;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	66482721	.	C	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.537;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr7	66489771	rs202064985	GA	G	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.04;ReadPosRankSum=0.223;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	66520726	.	C	CA,CAA	390.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.64;MQRankSum=0.000;QD=18.61;ReadPosRankSum=-0.745;SOR=0.765;set=HC	GT:AD:AF:DP	1/2:1,11,9:0.52,0.43:21
chr7	66532235	rs2711910	A	G	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	66648029	rs57386346	G	T	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	66762050	rs10245535	A	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.36;QD=25.93;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	66774157	rs2041575	T	C	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	66774604	rs1045513	G	C	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	66785029	rs2537522	G	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	69583231	.	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.082;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=9.828;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=0.088;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr7	70238858	rs55838430	G	C	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	70252185	rs2293500	A	G	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr7	70254674	rs941346	G	T	4913.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	70772565	rs55690472	A	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	70800407	rs13240200	T	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	70885883	rs11455717	C	CT	5907.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	70886107	rs11455716	G	GC	2428.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	71036473	rs10277319	C	T	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	71142219	rs61740246	C	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	71176900	rs887584	G	A	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	71571436	rs10950296	G	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.49;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	72093957	rs28535321	A	G	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	72193864	rs3015858	T	C	12050.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=44.63;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr7	72193868	rs2960999	G	A	12050.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=44.80;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	72209527	rs11354897	CA	C	12649.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr7	72267637	rs200906243	C	CT	237.74	.	AC=1;AF=0.500;AN=2;DB;DP=27;MQ=59.19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr7	72277630	rs67852668	C	A	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	72277981	rs2286317	T	C	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	72280978	rs11281952	G	GTGTGTT	5683.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	72281355	rs35534997	C	T	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	72396170	.	GCGCCGCGCTCCCCAC	G	1821.73	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	72413443	rs62463429	G	A	3019.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	72416333	rs237934	C	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	72643743	rs202105914	G	A	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.43;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	72711796	.	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=33.77;SOR=7.223;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	72711816	rs374232589	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.59;QD=31.54;SOR=7.614;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	72711867	rs62465076	A	G	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	72712121	rs62465079	T	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.32;QD=26.54;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	72714701	.	C	T	843.77	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.25;QD=40.18;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	72714708	.	C	T	780.77	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.56;QD=43.38;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	72714721	.	C	G	538.77	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.56;QD=28.36;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	72738350	rs55963844	C	CG	3170.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	72738749	rs28626137	A	G	7066.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	72738762	rs6980258	CA	TG	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	72750627	rs4717751	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	72754919	.	C	CTTT	144.82	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=24.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	72861786	.	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	72879898	rs60386137	GA	G	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-2.465;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	72966422	.	C	CA	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.696;QD=2.18;ReadPosRankSum=-1.589;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:78,30:0.28:108
chr7	73014149	rs72649015	G	A	810.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	73020301	rs799157	T	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr7	73096993	rs8891	T	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	73097654	rs1128349	C	T	6608.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	73112057	rs369894399	TG	T	3680.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	73118033	rs35459363	G	A	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	73118398	rs7807316	T	C	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	73122923	rs2228607	A	G	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	73150511	rs1059779	T	C	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr7	73151195	rs3215356	AG	A	2379.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	73151644	rs6460052	A	G	7203.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr7	73152578	rs367606949	AC	A	1747.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	73153228	rs3812318	G	T	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr7	73184435	rs7084	G	C	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	73243786	rs4717822	T	G	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	73245519	rs8629	T	C	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	73249165	rs13246460	T	A	7731.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr7	73249299	rs13232463	G	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	73254464	rs73140869	G	T	1521.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.928;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.74;ReadPosRankSum=-0.693;SOR=0.383;set=HC	GT:AD:AF:DP	1/1:1,69:0.99:70
chr7	73254812	rs13241921	T	C	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	73254910	rs13242043	T	A	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	73255647	rs4717823	G	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	73275396	rs4324825	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	73275501	rs11770024	T	C	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	73275565	rs11770052	T	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.690;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	73275769	rs11767129	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	73279233	rs10675041	C	CAA	507.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.953;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.533;QD=19.53;ReadPosRankSum=0.486;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,22:0.85:26
chr7	73279482	rs13227841	T	C	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	73280020	rs1136647	C	T	7628.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	73466327	rs200929398	G	A	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	73467650	rs66498390	CTGTG	C	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.38;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	73470782	rs2856728	C	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	73472050	rs28763986	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	73513242	.	CAA	C	1145.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.75;ReadPosRankSum=-1.028;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:10,48:0.83:58
chr7	73530046	rs149618	A	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	73630155	rs2293757	G	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	73630406	rs2293758	G	A	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	73649825	rs3135698	T	C	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	73651743	rs3135688	T	C	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	73653244	rs41552517	C	T	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr7	73787153	.	CCT	C	58	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=23;MQ=60.0;NF=3;NR=1;PP=58;QD=16.5;SC=GATGACGCCTCCTCTCTCTCT;SbPval=0.82;Source=Platypus;TC=17;TCF=11;TCR=6;TR=4;WE=73787162;WS=73787152;set=Platypus	GT:AD:AF:DP	0/1:13,4:0.24:17
chr7	73814749	rs2522943	G	C	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr7	73818404	rs2240436	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	73949372	rs118165959	G	A	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	74167356	rs116428284	A	T	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.55;QD=25.25;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	74167490	rs373607978	C	T	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=45.05;MQRankSum=1.468;QD=8.28;ReadPosRankSum=0.889;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr7	74193668	rs17295741	G	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	74197598	.	T	A	275.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.06;QD=27.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	74482794	rs111457769	T	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	74489486	rs6955671	T	C	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	74524986	rs142604065	G	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	74536839	rs370302219	AT	A	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.61;MQRankSum=-2.508;QD=3.26;ReadPosRankSum=-0.132;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr7	74582543	.	T	G	257.78	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.34;QD=28.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	74608637	rs202106138	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.21;MQRankSum=0.039;QD=1.15;ReadPosRankSum=1.841;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr7	74608740	.	C	CTT	331.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.15;MQRankSum=-8.231;QD=2.30;ReadPosRankSum=2.827;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:117,27:0.19:144
chr7	75044385	rs236649	C	T	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	75044830	rs236651	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.64;QD=29.89;SOR=2.683;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	75045496	rs201842651	AG	A	2819.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.45;QD=30.00;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	75051324	rs117499978	G	C	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	75051368	rs398003	T	C	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	75071964	rs376646711	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	75115201	rs186328613	C	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	75145266	rs5884966	TA	T	2209.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr7	75167705	.	C	A	477.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr7	75171438	rs11773745	G	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	75176196	rs1167800	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	75183403	rs1167807	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	75185990	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-1.107;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:21,8:0.28:29
chr7	75188991	rs34985543	C	T	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	75210763	rs237239	TG	CA	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	75211544	rs41281105	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	75216202	rs1167787	A	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	75398998	rs2302009	A	C	3911.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	75510561	rs7807392	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	75511134	rs10255642	A	G	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	75511667	rs77273947	C	T	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	75513062	rs42183	A	G	9355.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr7	75513216	rs4728517	T	A	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.16;SOR=3.545;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	75544455	rs3823884	A	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	75601867	rs17148944	G	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	75610763	rs2286819	G	A	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	75612770	rs13223707	C	G	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	75612783	rs13240147	G	A	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	75612803	rs41301394	C	T	6860.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	75614029	rs4732515	T	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	75614082	rs4732516	C	G	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr7	75614557	rs41301427	G	A	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr7	75614863	rs2302431	TG	CT	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	75614953	rs2228104	T	C	6922.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr7	75615006	rs1057868	C	T	8803.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr7	75616577	rs8509	G	A	7557.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.10;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	75616817	rs201142190	GGACA	G	6042.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	75618380	rs112021685	C	G	341.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	75618427	rs186407955	T	G	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.48;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	75618434	rs372247602	CT	GG	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.38;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	75621661	rs2286826	G	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	75621827	rs4732519	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	75621979	rs6467956	T	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	75623893	rs114462308	G	A	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	75625968	rs76760929	T	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	75628461	rs4728538	A	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	75643313	rs7798794	C	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	75651313	.	T	TA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.245;QD=0.44;ReadPosRankSum=2.108;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:122,24:0.16:146
chr7	75659547	rs6957698	C	A	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	75677430	rs10231092	C	G	4947.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr7	75677504	rs6720	C	T	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	75684326	rs79663210	G	A	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	75692927	rs1637037	C	T	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	75693009	rs1637039	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	75693963	rs2286830	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	75694079	rs11972240	T	G	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	75806299	rs12538908	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	75910977	.	G	A	203.78	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	75912536	rs3839766	TG	T	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	75914934	rs75544239	G	GC	3472.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	76023088	rs140509712	C	CG	9948.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	76023131	rs35508921	A	AG	11642.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr7	76054195	rs13232187	T	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	76058767	rs6465128	G	T	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:1,240:1.00:241
chr7	76062441	.	T	TTTGGTTTTGG	1840.73	.	AC=2;AF=1.00;AN=2;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=44.90;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	76069811	rs2906999	T	C	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:291,176:0.38:467
chr7	76069902	rs1804905	G	C	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:159,146:0.48:305
chr7	76069937	rs2906996	C	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:111,82:0.42:193
chr7	76071228	rs143649134	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.83;QD=28.46;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	76112183	.	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547;ClippingRankSum=0.000;DP=394;ExcessHet=3.0103;FS=19.785;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-18.635;QD=0.14;ReadPosRankSum=-1.841;SOR=1.520;set=HC	GT:AD:AF:DP	0/1:342,51:0.13:393
chr7	76129364	rs78474289	G	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.96;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76144455	rs1799125	A	C	18463.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:1,721:1.00:722
chr7	76144560	rs1799126	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	76239480	rs200882024	C	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=26.57;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	76239503	rs140446540	G	GC	3017.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=32.10;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	76239703	rs150952334	T	A	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	76240785	rs71819724	CA	C	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.49;QD=28.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76255032	rs2527936	A	G	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr7	76255452	rs62476699	G	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	76255491	rs71535586	C	T	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	76255998	rs2006268	T	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.17;QD=25.33;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	76607938	rs56083327	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	76608143	rs2245368	C	T	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	76610299	rs62473743	A	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.60;QD=28.23;SOR=1.584;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	76610346	rs71552449	C	T	1579.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=30.38;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	76610407	rs62473744	A	G	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.06;QD=24.93;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	76610621	rs6956966	T	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.28;QD=25.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	76619795	rs149365700	G	A	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	76624959	rs55895615	C	T	652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-4.044;QD=9.74;ReadPosRankSum=-0.260;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:33,34:0.51:67
chr7	76629626	rs145082715	G	A	1424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=-3.776;QD=10.63;ReadPosRankSum=0.101;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:67,67:0.50:134
chr7	76629830	rs145314075	C	G	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.68;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76632736	rs3748126	C	G	2995.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	76633500	rs201602818	G	A	53.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.78;MQRankSum=-1.150;QD=13.45;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr7	76633640	rs79277119	C	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.05;MQRankSum=-2.002;QD=11.86;ReadPosRankSum=0.704;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,36:0.62:58
chr7	76634033	rs1861028	A	G	280.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	76634077	rs62474183	T	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.61;QD=24.98;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	76634269	rs77501390	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	76635003	rs76696965	A	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.61;QD=43.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	76635006	rs200111237	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.61;QD=43.99;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	76635139	rs62474189	CG	TA	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	76723361	rs202136286	A	C	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	76723447	rs200343407	C	T	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.80;QD=25.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	76739462	rs6962677	G	A	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.81;QD=30.19;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	76742649	rs142960161	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.26;QD=26.93;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	76748903	rs139039802	AACTTCTAC	A	6855.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	76796958	rs28431858	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.572;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=27.020;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-7.359;QD=1.32;ReadPosRankSum=-0.447;SOR=4.510;set=HC	GT:AD:AF:DP	0/1:133,20:0.13:153
chr7	76871086	rs74783981	G	A	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	76883685	rs3114318	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.28;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	76883717	rs2056709	C	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	76883989	rs3114319	C	T	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	76885769	rs3108428	A	G	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	76941547	rs35791980	C	A	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	76941549	rs148017002	A	AAT	3937.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	76942644	rs7790123	A	G	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	76942959	rs2272316	G	A	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	76950035	rs6950870	C	T	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	76958730	rs10274222	A	G	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	76982109	rs10714796	AC	A	3171.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	76982480	rs4729347	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	76984426	rs2037751	T	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	76984572	rs2037753	G	A	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	76984752	rs11422745	C	CA	1231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.645;QD=11.10;ReadPosRankSum=0.365;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,85:0.77:111
chr7	76990126	rs4727365	C	T	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	76990178	rs4727366	C	G	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	76991935	rs1527263	C	T	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	77006092	rs34587200	CA	C	228.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=4.102;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=0.193;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr7	77006717	.	CAAAA	C,CA	1696.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.344;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=30.30;ReadPosRankSum=0.839;SOR=0.767;set=HC	GT:AD:AF:DP	1/2:2,22,32:0.39,0.57:56
chr7	77012042	rs6972651	C	T	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	77026460	rs2286156	G	A	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	77035392	rs6949654	T	C	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	77539744	rs711309	G	A	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	77552127	rs848486	G	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	77567008	.	A	AT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=0.621;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr7	77755197	rs2023946	A	G	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	77756580	rs2074641	T	C	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	77756724	rs7812015	C	T	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr7	77756815	rs9656109	G	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	77756849	rs2074642	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	77764253	rs1465221	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	77764591	rs767682	C	A	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	78118982	rs1548868	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	78119109	rs3735442	C	T	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	78119221	rs3086374	G	GA	1995.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:6,97:0.94:103
chr7	78256342	rs38116	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	78256643	rs38117	G	T	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	79840212	rs3801356	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	80087981	rs2074673	A	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	80088041	rs2074674	G	A	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	80091981	rs799936	G	A	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	80141069	rs10230573	A	G	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	80290369	rs3211892	A	G	4474.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr7	80374342	rs1949971	A	G	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr7	80374438	rs1949972	T	C	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	80378148	rs1405743	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	80378175	rs2886793	T	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	80378319	rs2272351	G	C	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	80418689	rs17275986	A	G	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,195:0.99:197
chr7	80434918	rs2030924	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	80456708	.	GTTT	G	683.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=6.410;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.856;QD=24.42;ReadPosRankSum=1.554;SOR=0.061;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr7	80456841	rs4461841	C	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	80817269	rs327695	T	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	81366210	.	G	GGT	313.73	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr7	81372596	rs5745674	T	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	81374500	rs4732406	G	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	81591114	rs72063149	GTAATGATTATAACAGTATATACAATTTCT	G	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	81596813	rs17240387	T	C	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	81600197	rs37067	A	G	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.98;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	81603945	.	AT	A	27	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=13;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=27;QD=16.5;SC=TGAAAACACTATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=81603953;WS=81603935;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr7	81634822	rs71885491	GA	G	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-2.942;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr7	81641570	.	GA	G	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-0.463;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr7	82497343	rs4628206	T	A	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	82581488	rs10630259	T	TTCA	12910.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	82763534	rs149498958	A	AAT	257.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr7	82764425	rs2877	C	G	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr7	82784017	rs6951239	G	T	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	83021799	rs375518443	TAAAA	T,TA	1942.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=31.85;SOR=1.708;set=HC	GT:AD:AF:DP	1/2:0,27,34:0.44,0.56:61
chr7	83023587	.	TAC	T	8880.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.145;QD=33.64;ReadPosRankSum=1.171;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,263:1.00:264
chr7	83026100	rs150931802	C	CAA	1498.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	83029280	rs2255906	T	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.70;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	83029438	rs2722974	C	T	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	83029639	rs2255820	A	T	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	83031907	rs2709930	T	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	83032187	rs2722976	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	83034754	rs2245441	T	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	83034899	rs2709935	T	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	83035177	rs3735512	G	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	83036367	rs2245312	C	G	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr7	83036602	rs2709941	T	A	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	83037751	rs2722985	C	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	83047583	rs2723033	T	C	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	83047585	rs2713146	A	C	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	83047666	rs2713145	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	83095968	rs2713180	C	A	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	83098428	rs3842170	A	AT	191.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	83098696	rs12534772	T	A	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=27.11;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	83098749	rs13225391	G	A	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	83246043	rs67160899	CT	C	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.892;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.668;QD=1.31;ReadPosRankSum=0.777;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:81,28:0.26:109
chr7	83590852	rs797821	T	C	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr7	83592491	rs7809708	T	C	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	83606353	rs35361892	T	TGA	1070.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	83606518	rs701320	G	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	83606595	.	AATAT	A	25	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.4999;HP=3;HapScore=2;MGOF=13;MMLQ=22;MQ=60.0;NF=0;NR=2;PP=25;QD=17.0;SC=AGAGAAATAAAATATATATAT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=2;WE=83606606;WS=83606585;set=Platypus	GT:AD:AF:DP	0/1:4,2:0.33:6
chr7	83610497	rs7789094	C	A	199.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	83739762	rs1990044	T	C	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	83740015	rs1990045	T	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	83764309	rs17241389	C	G	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	84751259	rs375445705	TA	T	397.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:4,28:0.88:32
chr7	86274196	rs274623	T	G	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	86536849	rs10547506	CA	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.239;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr7	86556236	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=1.679;QD=2.49;ReadPosRankSum=1.672;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	86567364	rs7797095	C	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	86571304	rs13236006	CA	AG	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=1.548;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	86594379	rs6976741	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	86594423	rs6976877	G	A	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	86998842	rs6966140	G	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	86998936	rs35374737	AT	A	669.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	87005287	rs59190666	C	CT	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=0.646;QD=11.64;ReadPosRankSum=-1.738;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:10,38:0.79:48
chr7	87006567	rs802042	G	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	87011349	rs31630	G	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	87022024	rs31644	G	C	4448.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	87027419	rs5885580	C	CT	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.999;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	87032613	rs31653	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	87053150	rs31667	A	G	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	87053206	rs31668	G	A	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr7	87056260	rs10647775	A	AGT	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr7	87069758	rs31675	T	C	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	87082292	rs1202283	G	A	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	87168749	rs4728699	C	T	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	87215114	rs1211152	A	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	87229440	rs9282564	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	87229501	rs2214102	T	C	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	87563975	rs57360340	AT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.102;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.441;QD=3.81;ReadPosRankSum=0.197;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr7	87594188	rs1637500	T	G	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	87759588	.	AT	A	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.705;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr7	87840263	rs6964163	T	C	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	88389420	rs1858848	A	G	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:2,328:0.99:330
chr7	88423414	rs3843538	C	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	88424115	rs2373396	C	G	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	88424291	rs4363132	C	T	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	88424365	rs35996371	CAA	C	273.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	88847450	rs199973381	TA	T	1982.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	88847453	rs4140974	G	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	89856413	rs17865520	A	G	7489.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr7	89861890	rs194525	G	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr7	89861942	rs194526	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	89867369	rs2013992	C	G	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr7	89884667	rs11563919	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	89884701	rs11563436	G	C	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	89901039	rs10280053	A	C	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	89906683	rs13245039	A	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	89912301	rs1029365	G	A	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	89927191	rs6465256	T	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	89937027	rs35441907	CA	C	295.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.600;QD=11.83;ReadPosRankSum=-1.163;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr7	89938588	rs7803620	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	89938680	rs1134956	C	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	89969831	rs42637	A	G	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	89969878	rs2285399	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	89971556	rs1557650	A	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	89983808	rs42663	T	G	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	89984409	rs42664	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	90003694	rs11563547	A	C	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	90014111	rs9886362	G	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	90225928	rs7782773	T	C	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	90356175	rs10240049	T	C	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	90742137	rs376151415	GGT	G	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-0.425;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr7	90742168	.	G	GGA	80	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=25;MQ=60.0;NF=0;NR=8;PP=80;QD=10.5;SC=GTGTATGTGTGGAGAGAGAGA;SbPval=1.0;Source=Platypus;TC=26;TCF=1;TCR=25;TR=8;WE=90742179;WS=90742158;set=Platypus	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	90747315	rs803167	A	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr7	90894102	rs2232158	C	G	175.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	90894459	rs139480179	A	ACCG	1289.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	91599825	rs2188155	A	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr7	91630620	rs6964587	G	T	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	91632306	rs1989779	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	91641928	rs13245393	A	G	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	91645265	rs10263309	A	G	196.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	91652178	rs10644111	A	AAAC	2453.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	91659150	rs17164315	C	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	91667692	rs2285333	T	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	91669960	rs71292989	G	GT	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.319;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.039;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.720;QD=6.82;ReadPosRankSum=2.723;SOR=1.435;set=HC	GT:AD:AF:DP	0/1:25,31:0.55:56
chr7	91670318	rs112533094	A	AT	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.10;ReadPosRankSum=0.804;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr7	91671853	rs926192	C	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	91674302	rs9785013	G	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	91687351	rs1544377	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	91690457	rs56072181	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	91691601	rs10236397	C	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	91706381	rs200199046	T	TTTA	394.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.88;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	91706406	rs201649179	C	CT	277.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	91706410	rs370936884	C	T	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	91707197	rs733957	C	T	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	91711791	rs2079082	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	91712698	rs6960867	A	G	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	91713016	rs34688691	TA	T	1628.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	91713018	rs114399745	A	T	693.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr7	91713972	rs10228334	C	T	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	91714911	rs1063242	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	91715662	rs28927678	C	T	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	91726927	rs1063243	A	C	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	91727385	rs6946356	G	A	3539.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	91736794	rs7785971	T	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	91743150	rs7797834	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	91752690	rs2269727	C	A	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	91758422	rs4729021	C	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	91761305	rs66673218	CA	C	470.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	91779242	rs1978061	G	A	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	91779971	rs6465353	T	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr7	91863700	rs2027950	G	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	91977226	rs2097810	G	A	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	92129161	rs5885806	CA	C	2042.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:13,122:0.90:135
chr7	92131289	rs10278857	G	T	6305.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	92135802	rs6465359	T	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	92147584	rs38809	C	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	92855628	rs200511300	T	TA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=5.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-2.841;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:80,21:0.21:101
chr7	93346095	rs2027984	C	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	93540348	rs2798	T	G	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	93551428	rs4262	C	T	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	93555311	rs180233	A	C	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	94033800	rs406226	A	G	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	94034848	rs810687	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	94038934	rs42518	C	T	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	94039032	rs42519	C	T	5352.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	94039900	rs42520	C	T	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	94040133	rs389328	T	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	94040287	rs34026686	G	A	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr7	94040345	rs35587403	GT	G	705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.715;QD=8.21;ReadPosRankSum=1.396;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:28,58:0.67:86
chr7	94043239	rs42524	C	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	94043493	rs2301643	G	A	9312.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr7	94045576	rs42526	G	A	186.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	94055933	rs13240759	T	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	94056006	rs400218	A	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	94056244	rs413826	C	G	897.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=2.793;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.03;ReadPosRankSum=-1.532;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:2,21:0.91:23
chr7	94056251	rs199900944	GAA	G	876.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.72;ReadPosRankSum=-1.451;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr7	94058410	rs11374490	C	CT	312.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	94058420	rs34888194	C	CT	412.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.530;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=2.106;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr7	94146975	rs2301646	T	G	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	94157585	rs57770781	CT	C	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	94174854	rs3793326	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	94175073	rs3793325	T	C	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	94176627	rs6958243	G	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	94178749	rs10272136	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	94178761	rs7801436	C	T	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.98;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	94182373	rs6465417	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	94183993	rs10280843	G	A	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	94184691	rs10238176	T	A	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	94879225	rs12690919	A	T	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	94953913	rs705380	G	C	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	94989255	.	CT	C	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.346;QD=2.97;ReadPosRankSum=-0.679;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:46,31:0.40:77
chr7	94992244	rs10953143	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	94996913	rs3757708	T	G	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	95001555	rs1053275	C	T	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	95019355	rs6977389	G	A	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	95024046	rs11970910	A	G	9318.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr7	95025600	rs13226149	G	A	12253.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr7	95034775	rs7493	G	C	5046.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	95035582	rs3735586	A	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	95039445	rs2286232	C	T	2254.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.153;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=-0.493;SOR=0.362;set=HC	GT:AD:AF:DP	1/1:1,92:0.99:93
chr7	95041016	rs12026	G	C	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	95041542	rs2068604	G	T	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	95125050	.	C	CT	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-1.649;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:22,41:0.65:63
chr7	95442405	.	C	CTT	271.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;QD=16.98;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	95442690	rs35397709	T	TA	897.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-0.090;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:16,63:0.80:79
chr7	95447785	rs10590197	ATT	A,AT	1568.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.274;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=-1.682;SOR=0.312;set=HC	GT:AD:AF:DP	1/2:2,37,20:0.63,0.34:59
chr7	95447787	.	T	A	196.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=0.320;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chr7	95447788	.	T	A	347.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-1.147;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr7	95727014	rs7794344	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	95800820	rs2301629	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	95813831	rs6962870	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	95818444	rs2073976	C	T	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	95818475	rs6957286	G	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	95818864	.	CAA	C,CA	718.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=3.580;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-0.013;SOR=1.034;set=HC	GT:AD:AF:DP	1/2:7,22,28:0.39,0.49:57
chr7	95864044	.	G	GA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=9.766;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=2.034;QD=2.79;ReadPosRankSum=-0.164;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr7	96338929	rs10250534	A	G	8094.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	96635155	.	CTT	C	173.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.341;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.41;ReadPosRankSum=-0.066;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:5,9:0.64:14
chr7	96635420	.	A	AGCC	5648.73	.	AC=1;AF=0.500;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	0/1:19,148:0.89:167
chr7	96649884	rs3214218	A	AG	144.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	97484478	rs4568556	A	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	97488146	rs36021744	G	GT	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	97488569	rs1049674	A	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	97498535	rs6465630	A	G	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	97616670	rs112827162	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-5.427;QD=1.90;ReadPosRankSum=-0.404;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr7	97619528	rs149655243	ATTT	A,ATT	368.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.251;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.634;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.49;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.581;SOR=0.166;set=HC	GT:AD:AF:DP	1/2:4,8,15:0.30,0.56:27
chr7	97784061	rs17435590	T	C	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	97816327	rs6465657	C	T	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr7	97820868	rs11451148	C	CA	1698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.138;QD=10.55;ReadPosRankSum=-1.571;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:41,120:0.75:161
chr7	97822115	rs11765552	T	A	8946.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr7	97822210	rs3801294	G	A	10017.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr7	97846856	rs11471393	CGAG	C	2821.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	97851109	rs4729416	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	97852899	rs2270595	A	G	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	97862097	rs139511001	GA	G	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.81;ReadPosRankSum=-1.006;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:78,24:0.24:102
chr7	97874143	rs3816944	C	A	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	97911618	rs111849767	G	A	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	97920270	rs7778015	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	97921834	rs6465664	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	97922773	rs12873	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	97922851	rs12728	C	T	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	97922875	rs13008	G	A	1986.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	97933601	rs1045916	C	T	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	97935671	rs13232181	C	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	97937258	rs6465666	T	C	7814.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr7	97939998	rs139666268	C	CTATTTATT	321.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	97944744	rs2107716	G	A	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	97944931	.	A	AAATAAT	1435	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=12;HapScore=1;MGOF=19;MMLQ=28;MQ=59.72;NF=1;NR=16;PP=1435;QD=84.7058823529;SC=CATACTAAAAAAAAAAAAATA;SbPval=0.72;Source=Platypus;TC=27;TCF=2;TCR=25;TR=17;WE=97944945;WS=97944921;set=Platypus	GT:AD:AF:DP	1/1:10,17:0.63:27
chr7	97944933	rs11385557	A	AT	1583.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=41.68;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	97944935	rs11385558	A	AT	1584.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=48.02;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	97944937	rs372695844	A	ATAAT	1471.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=49.06;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	97944986	rs6963210	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	97949650	rs75021532	G	A	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	97991792	rs3801257	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	98460824	rs10238224	C	A	9158.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	98461062	rs1548622	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr7	98495299	rs35409546	G	GTT	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=27.56;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr7	98495304	rs56294747	G	T	632.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	98500956	rs7777927	C	T	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	98503707	rs3214239	TG	T	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	98504025	rs139837317	TTTTATTTATTTA	T	676.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	98513300	rs1859662	C	T	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	98548682	.	C	CTGTGTGTGTGTG	318.76	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	98550654	rs66469618	TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	TTG,T	3425.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=113;set=Intersection	GT:AF:DP	1/1:1.00:84
chr7	98552572	rs116948764	G	A	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	98553739	rs3214240	T	TC	404.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	98558880	rs160384	G	C	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	98658130	rs11311529	CT	C	892.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.541;QD=11.90;ReadPosRankSum=0.425;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:14,61:0.81:75
chr7	98659812	rs67817120	GGT	G	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	98659813	.	GTGA	G	770	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=5;NR=11;PP=770;QD=51.3456046626;SC=GAACTCCTGGGTGATTCAAGC;SbPval=0.58;Source=Platypus;TC=16;TCF=5;TCR=11;TR=16;WE=98659825;WS=98659803;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	98659816	rs11295323	AT	A	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	98775482	.	CCT	C	1411	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=22;NR=7;PP=1411;QD=49.8620689655;SC=GCAGGGTGACCCTCTGCAGAG;SbPval=0.56;Source=Platypus;TC=29;TCF=22;TCR=7;TR=29;WE=98775494;WS=98775472;set=Platypus	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	98775483	rs35863016	CT	C	2397.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=2.522;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	98775485	rs35347900	CT	C	2397.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=2.522;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	98775486	.	T	C	793	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=35;NR=7;PP=793;QD=19.708838394;SC=GGTGACCCTCTGCAGAGCTGC;SbPval=0.54;Source=Platypus;TC=48;TCF=40;TCR=8;TR=42;WE=98775494;WS=98775472;set=Platypus	GT:AD:AF:DP	1/1:6,42:0.88:48
chr7	98779740	rs6465740	G	T	4420.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.216;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=-0.619;SOR=0.279;set=HC	GT:AD:AF:DP	1/1:1,173:0.99:174
chr7	98782508	rs10245912	T	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	98790607	rs369709836	TA	T	1121.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.805;MLEAC=2;MLEAF=1.000;MQ=60.76;MQRankSum=0.477;QD=16.50;ReadPosRankSum=-0.859;SOR=0.241;set=HC	GT:AD:AF:DP	1/1:2,66:0.97:68
chr7	98790669	rs7783606	G	C	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	98790699	rs7783618	G	A	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr7	98790885	rs34088480	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	98793061	rs73401379	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	98800690	rs10499949	A	G	3500.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.129;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=1.038;SOR=0.324;set=HC	GT:AD:AF:DP	1/1:1,139:0.99:140
chr7	98800834	rs61749907	A	G	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr7	98800967	rs67749476	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	98804967	rs12705041	C	T	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	98804995	rs12705042	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	98805236	.	CTTTTTTTTTTTTTTTTTTTTTTTTTTT	C	1861.73	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:2,51:0.96:53
chr7	98870997	rs28608208	A	G	4505.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	98871071	rs57685378	G	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	98936001	rs11380095	A	AT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.751;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr7	99021623	rs117295696	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	99084276	rs200026559	A	G	9262.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr7	99270342	.	C	T	7602.77	.	AC=2;AF=1.00;AN=2;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.819;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	99293475	rs2740565	T	A	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr7	99293859	rs11401860	C	CT	809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.572;QD=12.65;ReadPosRankSum=1.256;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:12,52:0.81:64
chr7	99297601	rs2037500	A	C	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	99297804	rs2177180	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	99302994	rs10211	C	T	2747.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	99303094	rs12360	G	A	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	99306566	rs2687077	C	T	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	99306685	rs2257401	C	G	10543.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr7	99312321	rs78380902	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr7	99314986	rs2687075	A	G	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr7	99365943	rs2687116	C	A	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	99370493	rs2738258	T	C	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	99499799	rs117674278	T	C	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	99654600	rs11558475	A	G	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	99654689	rs11558476	G	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	99673359	rs56054049	A	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	99675129	rs142917587	TA	T	483.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	99687969	rs140986444	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.67;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	99688822	rs2272346	A	C	13394.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr7	99690690	rs4928	G	C	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	99690747	rs1130958	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	99690849	rs115964837	C	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	99693337	rs7799115	T	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	99693552	rs2307355	G	A	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	99694771	rs76157218	G	A	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	99694784	rs115073631	C	G	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.14;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	99696370	rs1534309	C	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr7	99699626	rs2293481	T	C	3850.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	99700274	rs41280962	C	G	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	99701640	rs4729577	T	C	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr7	99703407	rs35827619	GA	G	314.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr7	99704827	rs1050542	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	99705320	rs4134927	A	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	99705346	rs4134926	TC	T	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	99705358	rs4134925	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	99706303	rs4134923	A	G	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	99707712	rs2272338	A	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr7	99707950	rs4134917	C	T	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	99710584	rs4134904	A	AG	3213.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	99711461	rs34119670	AC	A	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.571;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:203,40:0.16:243
chr7	99720309	rs76702812	C	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	99720640	rs1569055	C	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	99725146	rs78225095	C	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	99747130	rs12878	G	A	8179.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr7	99751017	rs3736591	A	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	99754637	rs885566	G	A	10948.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr7	99772298	rs10252037	A	C	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	99779524	rs11309984	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.748;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr7	99802812	rs2246713	G	C	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr7	99810643	rs1618851	T	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	99811204	rs1623264	G	C	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	99811313	rs1624099	G	A	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr7	99811464	rs1727130	C	G	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr7	99816179	rs1727142	T	C	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.07;QD=25.00;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	99816256	rs1727143	C	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	99816272	rs1636986	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.79;QD=43.58;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	99816275	rs1636987	G	C	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.79;QD=43.58;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	99816285	rs79649688	A	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.33;QD=51.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	99817859	rs2906645	A	G	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	99818137	rs2906646	G	A	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	99818927	rs705867	C	T	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;MQ=60.54;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr7	99819004	rs141918023	CTCTG	C	1590.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	99821128	rs118107707	T	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	99821381	rs858508	C	G	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	99821470	rs858509	A	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	99821685	rs863450	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	99821838	rs372167927	ATTTTTT	A	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	99821894	rs858510	C	T	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	99917255	.	G	A	11628.77	.	AC=2;AF=1.00;AN=2;DP=438;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr7	99971313	rs2405442	T	C	15185.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr7	99971834	rs1859788	A	G	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr7	99972157	.	C	T	14409.77	.	AC=2;AF=1.00;AN=2;DP=551;set=Intersection	GT:AD:AF:DP	1/1:2,547:1.00:549
chr7	100004446	rs1476679	C	T	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	100013457	rs5015756	T	C	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	100064719	rs7806537	A	G	9143.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr7	100137085	rs78279132	G	C	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr7	100146365	.	CCCT	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=-1.199;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:145,14:0.09:159
chr7	100173481	rs2075668	A	G	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	100175473	rs909152	T	C	10840.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr7	100197871	rs2272575	A	G	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:1,119:0.99:120
chr7	100201230	rs112882557	AC	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=3.037;QD=0.81;ReadPosRankSum=-2.156;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr7	100227188	rs7457868	A	C	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	100240771	rs1052897	A	T	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	100279946	rs117080933	G	A	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	100280896	rs221793	A	C	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	100281768	rs221794	T	C	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	100283261	rs221795	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	100284510	rs35436931	TG	T	7219.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	100284913	rs221796	C	G	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr7	100285974	rs221797	A	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	100348129	rs3847057	G	A	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	100371100	rs2734880	C	A	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr7	100371114	rs314298	C	T	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	100371473	rs314299	C	T	9886.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr7	100374087	rs314300	A	G	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	100374265	rs149853621	TCCCTC	T	1917.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=42.62;SOR=5.376;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	100376978	rs314303	T	C	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	100383605	rs160602	T	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	100385561	rs72364644	GGCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	G	9315.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr7	100386900	rs191137	T	C	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr7	100391581	rs314339	T	C	7773.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr7	100391644	rs314340	T	C	5628.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr7	100393141	rs314343	C	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	100395003	rs314344	G	C	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	100401270	rs314348	T	G	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	100410657	rs314358	A	G	12921.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:1,497:1.00:498
chr7	100411278	rs314359	T	C	4809.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr7	100416250	rs144173	A	G	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr7	100416332	rs314364	T	A	1840.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.033;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.79;ReadPosRankSum=2.014;SOR=0.129;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr7	100416354	rs314365	G	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	100424577	rs141919245	G	GC	963.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=9.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.57;ReadPosRankSum=0.114;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:21,50:0.70:71
chr7	100424586	.	CG	C	336	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=8;HapScore=3;MGOF=10;MMLQ=25;MQ=60.16;NF=11;NR=21;PP=336;QD=11.03125;SC=CGCCCCCCCCCGCAAGGAAAC;SbPval=0.53;Source=Platypus;TC=59;TCF=20;TCR=39;TR=32;WE=100424595;WS=100424567;set=Platypus	GT:AD:AF:DP	1/1:27,32:0.54:59
chr7	100424587	rs2304374	G	C	2319.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.707;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.78;ReadPosRankSum=-0.101;SOR=0.458;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr7	100424776	rs2571606	C	G	820.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	100467975	rs10627414	C	CCT	2703.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	100486035	rs2720392	C	A	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	100488658	rs1799806	G	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	100494222	rs66793456	G	GC	7088.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr7	100547148	.	GCAA	G	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-1.479;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	100547155	rs74789991	C	A	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-1.959;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr7	100547173	rs75482949	T	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-1.481;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	100547175	rs78695034	A	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.654;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-1.756;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr7	100547182	rs76728014	C	T	337.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.942;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.056;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr7	100547183	.	GC	G	283.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.118;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=-1.107;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr7	100547185	.	C	T	289.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.979;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=-0.960;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	100547189	.	GGGCCAC	G	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.405;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.566;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr7	100547211	rs79277565	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.890;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr7	100547215	rs77163569	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.277;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.901;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr7	100547220	rs77805555	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.866;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr7	100547225	rs77066311	T	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-1.188;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr7	100547227	rs76736259	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.686;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr7	100547238	rs79636720	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:30,11:0.27:41
chr7	100547525	rs142704104	ACC	A	362.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	100549414	rs75254397	CA	AT	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.018;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.323;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=1.898;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:86,31:0.26:117
chr7	100549421	rs75196671	GA	CT	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=8.270;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=1.318;SOR=1.679;set=HC	GT:AD:AF:DP	0/1:102,36:0.26:138
chr7	100549426	rs78724937	A	G	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.498;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=5.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=1.906;SOR=1.423;set=HC	GT:AD:AF:DP	0/1:121,37:0.23:158
chr7	100549505	rs74588241	T	C	4999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.240;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=6.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-2.757;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:418,148:0.26:566
chr7	100549512	rs77667788	A	T	5291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.161;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=4.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=-1.782;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:449,156:0.26:605
chr7	100549516	rs76951301	C	A	5280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.147;ClippingRankSum=0.000;DB;DP=627;ExcessHet=3.0103;FS=4.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.581;SOR=1.097;set=HC	GT:AD:AF:DP	0/1:464,162:0.26:626
chr7	100549527	rs77426926	A	G	6498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.254;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=7.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-1.038;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:515,188:0.27:703
chr7	100549530	rs77626205	A	G	6987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.075;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=9.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=-1.203;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:534,201:0.27:735
chr7	100549537	rs75781078	G	A	7496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.691;ClippingRankSum=0.000;DB;DP=771;ExcessHet=3.0103;FS=8.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=-0.163;SOR=1.341;set=HC	GT:AD:AF:DP	0/1:556,214:0.28:770
chr7	100549540	.	A	C	7577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.513;ClippingRankSum=0.000;DP=782;ExcessHet=3.0103;FS=9.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=0.408;SOR=1.380;set=HC	GT:AD:AF:DP	0/1:563,218:0.28:781
chr7	100549543	rs79492129	G	A	7946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.703;ClippingRankSum=0.000;DB;DP=794;ExcessHet=3.0103;FS=9.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.282;SOR=1.401;set=HC	GT:AD:AF:DP	0/1:566,227:0.29:793
chr7	100549547	rs77743944	TG	CC	4465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.822;ClippingRankSum=0.000;DB;DP=813;ExcessHet=3.0103;FS=9.702;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.832;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:579,233:0.29:812
chr7	100549573	rs73163748	G	T	11192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=901;ExcessHet=3.0103;FS=4.372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=1.763;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:596,304:0.34:900
chr7	100549583	rs73163749	G	A	12007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.756;ClippingRankSum=0.000;DB;DP=916;ExcessHet=3.0103;FS=4.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=1.534;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:592,323:0.35:915
chr7	100549592	rs73163750	TT	AA	12627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;ClippingRankSum=0.000;DB;DP=930;ExcessHet=3.0103;FS=5.182;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=1.179;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:588,341:0.37:929
chr7	100549650	rs73398716	A	G	8758.77	.	AC=1;AF=0.500;AN=2;DB;DP=1142;set=Intersection	GT:AD:AF:DP	0/1:675,463:0.41:1138
chr7	100549697	rs77036391	A	G	23138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.366;ClippingRankSum=0.000;DB;DP=1353;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-0.244;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:742,611:0.45:1353
chr7	100549703	rs78164286	C	T	23274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=1387;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.592;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:761,626:0.45:1387
chr7	100549787	rs73714227	CA	TG	28924.77	.	AC=1;AF=0.500;AN=2;DB;DP=1407;JOINED;set=Intersection	GT:AD:AF:DP	0/1:670,737:0.52:1407
chr7	100549873	rs74193966	G	A	26195.77	.	AC=1;AF=0.500;AN=2;DB;DP=1297;set=Intersection	GT:AD:AF:DP	0/1:606,688:0.53:1294
chr7	100549884	rs73163752	C	T	27128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625;ClippingRankSum=0.000;DB;DP=1293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.01;ReadPosRankSum=0.005;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:606,685:0.53:1291
chr7	100549894	rs78007565	T	C	25885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=1240;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.369;QD=20.91;ReadPosRankSum=1.146;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:597,641:0.52:1238
chr7	100549896	rs79035545	G	C	25449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=1243;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.375;QD=20.51;ReadPosRankSum=1.184;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:600,641:0.52:1241
chr7	100549902	rs75991009	C	T	25281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=1229;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.398;QD=20.60;ReadPosRankSum=1.299;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:599,628:0.51:1227
chr7	100549914	rs73714228	G	A	24021.77	.	AC=1;AF=0.500;AN=2;DB;DP=1205;set=Intersection	GT:AD:AF:DP	0/1:595,608:0.51:1203
chr7	100549935	rs73714229	T	G	23042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.821;ClippingRankSum=0.000;DB;DP=1204;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.909;QD=19.17;ReadPosRankSum=1.096;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:616,586:0.49:1202
chr7	100549942	rs73714230	T	C	22170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=1194;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.952;QD=18.62;ReadPosRankSum=1.447;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:619,572:0.48:1191
chr7	100549979	rs73398717	C	T	11755.77	.	AC=1;AF=0.500;AN=2;DB;DP=1168;set=Intersection	GT:AD:AF:DP	0/1:593,571:0.49:1164
chr7	100550032	rs111723000	C	CCCT	16555.73	.	AC=1;AF=0.500;AN=2;DB;DP=1016;set=Intersection	GT:AD:AF:DP	0/1:513,433:0.46:946
chr7	100550079	rs28379747	A	C	9296.77	.	AC=1;AF=0.500;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	0/1:555,442:0.44:997
chr7	100550133	rs74197937	A	G	17093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=3.258;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.646;QD=15.84;ReadPosRankSum=-0.482;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:620,459:0.43:1079
chr7	100550138	rs73714233	C	T	17205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=3.272;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.667;QD=15.71;ReadPosRankSum=0.459;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:636,459:0.42:1095
chr7	100550184	rs73714234	C	A	11400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=1056;ExcessHet=3.0103;FS=4.307;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=10.87;ReadPosRankSum=3.991;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:696,353:0.34:1049
chr7	100550203	rs75141335	T	A	10125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;ClippingRankSum=0.000;DB;DP=1002;ExcessHet=3.0103;FS=3.662;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=10.19;ReadPosRankSum=2.387;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:707,287:0.29:994
chr7	100550205	rs77471356	A	C	9840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DB;DP=1003;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.889;QD=9.89;ReadPosRankSum=2.148;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:714,281:0.28:995
chr7	100550245	rs66732041	G	A	3979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.490;ClippingRankSum=0.000;DB;DP=936;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.352;QD=4.30;ReadPosRankSum=-6.307;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:771,155:0.17:926
chr7	100550247	rs77753678	C	A	3404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.846;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=1.310;QD=3.75;ReadPosRankSum=-7.331;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:763,144:0.16:907
chr7	100550252	rs67587735	A	G	5476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=894;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-6.035;QD=6.17;ReadPosRankSum=-5.485;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:710,177:0.20:887
chr7	100550271	rs71540914	A	G	2893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;ClippingRankSum=0.000;DB;DP=812;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-7.559;QD=3.58;ReadPosRankSum=-5.676;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:698,111:0.14:809
chr7	100550280	rs78890474	A	C	1691.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.357;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-9.007;QD=2.24;ReadPosRankSum=-3.238;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:678,76:0.10:754
chr7	100550281	.	C	CTCA	1493.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.893;ClippingRankSum=0.000;DP=750;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-9.163;QD=2.00;ReadPosRankSum=-3.043;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:674,73:0.10:747
chr7	100550287	.	AGG	A	234.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.665;ClippingRankSum=0.000;DP=710;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-10.927;QD=0.33;ReadPosRankSum=-3.470;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:656,50:0.07:706
chr7	100550290	.	AC	A	192.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.753;ClippingRankSum=0.000;DP=699;ExcessHet=3.0103;FS=1.041;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-10.720;QD=0.28;ReadPosRankSum=-4.019;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:644,51:0.07:695
chr7	100550304	rs71540918	C	T	2494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-3.792;QD=2.75;ReadPosRankSum=-2.956;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:790,116:0.13:906
chr7	100550307	.	A	T	2589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.355;ClippingRankSum=0.000;DP=926;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.105;QD=2.87;ReadPosRankSum=-0.668;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:784,118:0.13:902
chr7	100550312	.	T	C	2590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.824;ClippingRankSum=0.000;DP=908;ExcessHet=3.0103;FS=0.818;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.990;QD=2.92;ReadPosRankSum=0.486;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:775,112:0.13:887
chr7	100550315	rs76964559	T	C	11020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.586;ClippingRankSum=0.000;DB;DP=902;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-7.892;QD=12.51;ReadPosRankSum=-3.072;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:595,286:0.32:881
chr7	100550316	rs78759433	G	A	907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-2.585;QD=1.03;ReadPosRankSum=-3.716;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:806,76:0.09:882
chr7	100550318	.	G	A	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.850;QD=2.74;ReadPosRankSum=0.032;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:770,114:0.13:884
chr7	100550326	rs111371899	ACA	GTG	5430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.880;ClippingRankSum=0.000;DB;DP=879;ExcessHet=3.0103;FS=4.295;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-5.947;QD=6.31;ReadPosRankSum=0.125;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:690,171:0.20:861
chr7	100550338	rs75318416	GG	CA	9850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.209;ClippingRankSum=0.000;DB;DP=886;ExcessHet=3.0103;FS=2.661;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-4.373;QD=11.31;ReadPosRankSum=-0.557;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:595,276:0.32:871
chr7	100550342	rs74184351	T	C	10603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.025;ClippingRankSum=0.000;DB;DP=879;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.802;QD=12.24;ReadPosRankSum=-0.023;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:590,276:0.32:866
chr7	100550348	.	A	C	2860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.854;ClippingRankSum=0.000;DP=905;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.765;QD=3.20;ReadPosRankSum=0.692;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:770,123:0.14:893
chr7	100550358	rs74184446	C	T	4619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.701;ClippingRankSum=0.000;DB;DP=942;ExcessHet=3.0103;FS=1.454;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-3.520;QD=6.08;ReadPosRankSum=-1.566;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:612,148:0.19:760
chr7	100550360	.	T	C	3481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.474;ClippingRankSum=0.000;DP=933;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-0.558;QD=3.83;ReadPosRankSum=1.018;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:772,137:0.15:909
chr7	100550364	rs74188306	C	T	5727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.608;ClippingRankSum=0.000;DB;DP=932;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-6.413;QD=6.23;ReadPosRankSum=2.870;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:731,188:0.20:919
chr7	100550376	.	C	T	2788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896;ClippingRankSum=0.000;DP=944;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.984;QD=3.21;ReadPosRankSum=0.509;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:750,120:0.14:870
chr7	100550384	rs77636516	C	T	2952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=931;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.402;QD=3.21;ReadPosRankSum=1.511;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:792,128:0.14:920
chr7	100550389	.	A	G	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.651;ClippingRankSum=0.000;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.936;QD=2.14;ReadPosRankSum=3.449;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:806,100:0.11:906
chr7	100550395	.	A	G	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.161;ClippingRankSum=0.000;DP=924;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=0.914;QD=1.66;ReadPosRankSum=3.266;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:813,96:0.11:909
chr7	100550396	rs74213821	G	C	12566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=920;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-3.277;QD=13.90;ReadPosRankSum=0.995;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:546,358:0.40:904
chr7	100550400	.	G	A	3463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DP=915;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.175;QD=3.83;ReadPosRankSum=2.239;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:757,148:0.16:905
chr7	100550432	rs111924697	C	T	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=878;ExcessHet=3.0103;FS=3.963;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.678;QD=2.61;ReadPosRankSum=-2.513;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:756,115:0.13:871
chr7	100550439	rs79004610	C	T	1902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.472;ClippingRankSum=0.000;DB;DP=851;ExcessHet=3.0103;FS=1.810;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.518;QD=2.25;ReadPosRankSum=-2.012;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:747,99:0.12:846
chr7	100550442	.	C	T	2302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DP=836;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.759;QD=2.77;ReadPosRankSum=-2.480;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:728,103:0.12:831
chr7	100550443	.	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.001;ClippingRankSum=0.000;DP=832;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.568;QD=0.36;ReadPosRankSum=-3.042;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:766,61:0.07:827
chr7	100550447	.	C	T	6006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805;ClippingRankSum=0.000;DP=818;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.955;QD=7.37;ReadPosRankSum=2.229;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:626,189:0.23:815
chr7	100550452	.	A	T	6100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DP=782;ExcessHet=3.0103;FS=0.617;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.979;QD=7.82;ReadPosRankSum=1.736;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:592,188:0.24:780
chr7	100550463	.	T	G	12115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.966;ClippingRankSum=0.000;DP=683;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.704;QD=17.77;ReadPosRankSum=-1.676;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:404,278:0.41:682
chr7	100550466	rs75319202	C	T	7671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=669;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-0.571;QD=11.48;ReadPosRankSum=-1.039;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:459,209:0.31:668
chr7	100550467	rs78312717	A	G	8883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.904;QD=13.38;ReadPosRankSum=-2.413;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:428,236:0.36:664
chr7	100550473	rs77401364	G	A	8383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.866;QD=13.83;ReadPosRankSum=-1.817;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:385,221:0.36:606
chr7	100550478	rs79412130	C	T	7984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=620;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.343;QD=12.90;ReadPosRankSum=0.193;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:399,220:0.36:619
chr7	100550490	.	G	A	2396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.649;ClippingRankSum=0.000;DP=601;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=1.451;QD=4.01;ReadPosRankSum=-1.152;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:486,112:0.19:598
chr7	100550501	.	T	G	789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.841;ClippingRankSum=0.000;DP=518;ExcessHet=3.0103;FS=0.871;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.114;QD=1.53;ReadPosRankSum=0.663;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:461,56:0.11:517
chr7	100550505	rs74715834	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=3.692;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.973;QD=0.33;ReadPosRankSum=0.868;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:453,38:0.08:491
chr7	100550507	rs139308151	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=3.656;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.026;QD=0.49;ReadPosRankSum=0.908;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:445,38:0.08:483
chr7	100550508	.	A	T	4063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DP=470;ExcessHet=3.0103;FS=11.470;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-5.480;QD=10.61;ReadPosRankSum=-0.681;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:272,111:0.29:383
chr7	100550510	.	A	C	4059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DP=455;ExcessHet=3.0103;FS=8.178;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.840;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:299,114:0.28:413
chr7	100550511	rs74435283	G	C	1747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=3.559;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=1.612;QD=4.34;ReadPosRankSum=-1.772;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:336,67:0.17:403
chr7	100550514	rs78262970	T	C	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.136;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-11.195;QD=1.15;ReadPosRankSum=-0.535;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:394,42:0.10:436
chr7	100550515	.	T	A	3653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.816;ClippingRankSum=0.000;DP=428;ExcessHet=3.0103;FS=7.420;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=2.073;QD=8.54;ReadPosRankSum=-1.451;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:324,104:0.24:428
chr7	100550520	rs77013428	C	T	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.879;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-11.443;QD=1.63;ReadPosRankSum=-0.365;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:381,42:0.10:423
chr7	100550522	rs76664943	C	G	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-11.222;QD=1.83;ReadPosRankSum=-0.567;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:366,42:0.10:408
chr7	100550525	.	C	T	615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=10.444;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=1.260;QD=1.55;ReadPosRankSum=-0.799;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:357,39:0.10:396
chr7	100550534	.	C	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.289;ClippingRankSum=0.000;DP=390;ExcessHet=3.0103;FS=11.731;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=1.244;QD=0.85;ReadPosRankSum=-0.821;SOR=1.623;set=HC	GT:AD:AF:DP	0/1:356,33:0.08:389
chr7	100550543	rs76777205	C	T	1299.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.348;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=31.958;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-9.239;QD=3.73;ReadPosRankSum=-0.326;SOR=2.297;set=HC	GT:AD:AF:DP	0/1:298,50:0.14:348
chr7	100550544	rs75037819	A	C	1269.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.059;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=35.097;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-9.304;QD=3.68;ReadPosRankSum=0.083;SOR=2.445;set=HC	GT:AD:AF:DP	0/1:296,49:0.14:345
chr7	100550552	rs77957081	A	T	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.982;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=37.326;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-8.678;QD=4.38;ReadPosRankSum=0.038;SOR=2.537;set=HC	GT:AD:AF:DP	0/1:268,51:0.16:319
chr7	100550562	rs78069287	G	A	1963.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.672;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=58.961;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.109;QD=6.16;ReadPosRankSum=-3.021;SOR=2.898;set=HC	GT:AD:AF:DP	0/1:254,65:0.20:319
chr7	100550563	rs77561545	A	G	2053.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.935;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=58.431;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.065;QD=6.40;ReadPosRankSum=-3.199;SOR=2.935;set=HC	GT:AD:AF:DP	0/1:255,66:0.21:321
chr7	100550564	rs75269566	C	T	2191.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.177;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=61.063;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-7.065;QD=6.83;ReadPosRankSum=-3.167;SOR=2.934;set=HC	GT:AD:AF:DP	0/1:255,66:0.21:321
chr7	100550568	rs78115301	T	A	2272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.250;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=76.646;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-6.541;QD=7.17;ReadPosRankSum=-5.752;SOR=3.160;set=HC	GT:AD:AF:DP	0/1:244,73:0.23:317
chr7	100550570	rs76035900	T	C	5116.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.091;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=52.617;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-4.771;QD=16.45;ReadPosRankSum=-5.495;SOR=1.960;set=HC	GT:AD:AF:DP	0/1:179,132:0.42:311
chr7	100550570	.	TG	CC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=1;MGOF=171;MMLQ=28;MQ=48.74;NF=86;NR=102;PP=2944;QD=20;SC=ACGACTCCTATGACAAACTTG;SbPval=0.31;Source=Platypus;TC=312;TCF=129;TCR=183;TR=188;WE=100550610;WS=100550534;set=Platypus	GT:AD:AF:DP	1/0:124,188:0.60:312
chr7	100550571	.	G	A	2401.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.194;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=80.713;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-6.070;QD=9.49;ReadPosRankSum=-7.527;SOR=3.310;set=HC	GT:AD:AF:DP	0/1:181,72:0.28:253
chr7	100550577	.	C	T	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0.000;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=0.403;QD=4.81;ReadPosRankSum=2.769;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:270,56:0.17:326
chr7	100550583	rs71888665	AACCACC	A	1705.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.811;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.860;QD=5.52;ReadPosRankSum=0.310;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:251,58:0.19:309
chr7	100550589	rs80123018	C	G	379.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.199;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=29.470;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-9.333;QD=1.25;ReadPosRankSum=-2.779;SOR=2.829;set=HC	GT:AD:AF:DP	0/1:277,28:0.09:305
chr7	100550595	rs80315860	T	C	724.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.199;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=34.565;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-7.987;QD=2.26;ReadPosRankSum=-4.501;SOR=2.773;set=HC	GT:AD:AF:DP	0/1:283,37:0.12:320
chr7	100550596	rs74991890	G	A	709.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.812;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=36.675;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-7.888;QD=2.20;ReadPosRankSum=-4.705;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:284,38:0.12:322
chr7	100550600	.	TCT	CCA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.59;FR=0.5000;HP=1;HapScore=1;MGOF=171;MMLQ=28;MQ=46.91;NF=25;NR=70;PP=2944;QD=20;SC=ACCACTGAGATCTCCTCCCAC;SbPval=0.68;Source=Platypus;TC=204;TCF=60;TCR=144;TR=95;WE=100550610;WS=100550534;set=Platypus	GT:AD:AF:DP	1/0:109,95:0.47:204
chr7	100550601	rs79112841	C	A	2027.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.878;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=3.863;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=1.137;QD=6.04;ReadPosRankSum=1.259;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:269,67:0.20:336
chr7	100550602	rs80036331	T	A	3969.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.948;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=41.283;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-4.091;QD=11.71;ReadPosRankSum=-2.328;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:229,110:0.32:339
chr7	100550604	rs74878158	C	A	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=4.535;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=2.038;QD=5.75;ReadPosRankSum=0.350;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:280,71:0.20:351
chr7	100551308	.	AG	GT	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.355;ClippingRankSum=0.000;DP=977;ExcessHet=3.0103;FS=3.795;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-8.438;QD=3.77;ReadPosRankSum=0.000;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:659,115:0.15:774
chr7	100551311	.	CTG	C	1040.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.298;ClippingRankSum=0.000;DP=972;ExcessHet=3.0103;FS=9.097;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-3.305;QD=1.34;ReadPosRankSum=0.461;SOR=2.112;set=HC	GT:AD:AF:DP	0/1:706,69:0.09:775
chr7	100551314	.	C	CAT	769.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.063;ClippingRankSum=0.000;DP=950;ExcessHet=3.0103;FS=10.989;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-6.826;QD=1.08;ReadPosRankSum=-4.349;SOR=2.018;set=HC	GT:AD:AF:DP	0/1:645,67:0.09:712
chr7	100551318	.	G	A	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.790;ClippingRankSum=0.000;DP=921;ExcessHet=3.0103;FS=9.055;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.911;QD=0.76;ReadPosRankSum=-0.369;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:675,62:0.08:737
chr7	100551322	rs76260977	C	T	3692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.784;ClippingRankSum=0.000;DB;DP=909;ExcessHet=3.0103;FS=5.838;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-13.555;QD=5.04;ReadPosRankSum=-5.087;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:605,128:0.17:733
chr7	100551326	.	C	CA	3308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.000;ClippingRankSum=0.000;DP=887;ExcessHet=3.0103;FS=3.609;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-13.506;QD=4.58;ReadPosRankSum=-5.786;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:608,115:0.16:723
chr7	100551329	.	C	CA	2778.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.517;ClippingRankSum=0.000;DP=864;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-13.251;QD=3.93;ReadPosRankSum=-7.507;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:597,110:0.16:707
chr7	100551331	.	GTA	G	2728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.396;ClippingRankSum=0.000;DP=868;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-13.783;QD=3.82;ReadPosRankSum=-8.058;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:611,104:0.15:715
chr7	100551370	rs78124935	AG	TC	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.803;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-5.198;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:548,80:0.13:628
chr7	100551376	rs75808610	C	A	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=2.575;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-4.776;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:534,95:0.15:629
chr7	100551390	rs77795035	T	A	3609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=4.353;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-3.022;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:514,123:0.19:637
chr7	100551392	rs75008337	CG	TA	3705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.585;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=4.353;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=5.84;ReadPosRankSum=-2.588;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:510,125:0.20:635
chr7	100551397	rs79748732	G	T	3906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.606;ClippingRankSum=0.000;DB;DP=642;ExcessHet=3.0103;FS=5.473;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-1.128;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:507,128:0.20:635
chr7	100551400	rs75496565	G	A	3946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DB;DP=649;ExcessHet=3.0103;FS=4.180;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-0.590;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:510,133:0.21:643
chr7	100551433	rs73398732	T	C	3755.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:504,223:0.31:727
chr7	100551461	rs78826835	C	G	10191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.073;ClippingRankSum=0.000;DB;DP=806;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-0.431;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:516,287:0.36:803
chr7	100551471	rs78831742	T	C	10913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.56;ReadPosRankSum=0.268;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:514,291:0.36:805
chr7	100551473	rs79233494	G	C	10897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.544;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.679;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:516,290:0.36:806
chr7	100551476	rs74460367	C	T	10715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=823;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.08;ReadPosRankSum=1.043;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:525,294:0.36:819
chr7	100551565	rs73163757	AT	GC	6332.77	.	AC=1;AF=0.500;AN=2;DB;DP=807;JOINED;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:486,317:0.39:803
chr7	100551578	rs78584246	T	G	6761.77	.	AC=1;AF=0.500;AN=2;DB;DP=806;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:469,335:0.42:804
chr7	100551626	rs73714238	T	C	10812.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:455,304:0.40:759
chr7	100551637	rs112753297	C	CCAA	11331.73	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:465,306:0.40:771
chr7	100551646	rs77153975	A	G	11210.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:445,289:0.39:734
chr7	100551662	rs78684063	C	T	10494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.293;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=-1.119;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:411,272:0.40:683
chr7	100551666	rs74318947	A	T	10179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.19;ReadPosRankSum=-1.094;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:405,265:0.40:670
chr7	100551687	rs73714240	T	C	10557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.95;ReadPosRankSum=-2.713;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:389,273:0.41:662
chr7	100551692	rs73714242	C	T	10386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=662;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=-2.278;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:389,271:0.41:660
chr7	100551711	rs113829577	T	C	8574.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:258,384:0.60:642
chr7	100551719	rs73714243	C	T	9500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.792;ClippingRankSum=0.000;DB;DP=664;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.37;ReadPosRankSum=1.485;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:404,257:0.39:661
chr7	100551729	rs73714244	C	T	9471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.249;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=1.224;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:410,266:0.39:676
chr7	100551773	rs73398734	C	A	14187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;ClippingRankSum=0.000;DB;DP=850;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=-0.827;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:476,371:0.44:847
chr7	100551778	rs73714247	G	A	14719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.709;ClippingRankSum=0.000;DB;DP=864;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=-1.084;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:478,383:0.44:861
chr7	100551793	rs73398735	G	T	14693.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	0/1:511,411:0.45:922
chr7	100551840	rs78273697	T	A	10593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.992;ClippingRankSum=0.000;DB;DP=1029;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.182;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:574,454:0.44:1028
chr7	100551842	rs75365561	CT	TC	17806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;ClippingRankSum=0.000;DB;DP=1033;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.25;ReadPosRankSum=0.416;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:577,455:0.44:1032
chr7	100551849	rs77242346	A	T	17717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.039;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=-0.313;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:576,469:0.45:1045
chr7	100552018	rs76249962	T	G	19674.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=1253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=-0.277;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:718,530:0.42:1248
chr7	100552018	.	TCC	GCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=3;HapScore=1;MGOF=9;MMLQ=23;MQ=60.0;NF=240;NR=236;PP=2944;QD=20;SC=TCCAGTGTTCTCCACTACCAT;SbPval=0.53;Source=Platypus;TC=1180;TCF=601;TCR=579;TR=476;WE=100552028;WS=100552008;set=Platypus	GT:AD:AF:DP	1/0:704,476:0.40:1180
chr7	100552020	rs78680358	C	T	10108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.190;ClippingRankSum=0.000;DB;DP=1233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=0.384;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:711,507:0.42:1218
chr7	100552044	rs73714250	T	G	9012.77	.	AC=1;AF=0.500;AN=2;DB;DP=1141;set=Intersection	GT:AD:AF:DP	0/1:664,472:0.42:1136
chr7	100552094	rs62483698	G	C	8006.77	.	AC=1;AF=0.500;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	0/1:559,390:0.41:949
chr7	100552117	rs62483699	G	T	7723.77	.	AC=1;AF=0.500;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	0/1:516,371:0.42:887
chr7	100552135	rs62483700	T	C	8314.77	.	AC=1;AF=0.500;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	0/1:519,395:0.43:914
chr7	100552251	rs9691900	T	C	7857.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:378,377:0.50:755
chr7	100552311	rs12535515	C	T	17123.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,618:1.00:618
chr7	100552338	rs73398798	C	T	7477.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:326,223:0.41:549
chr7	100552358	rs73714254	C	G	7323.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:333,193:0.37:526
chr7	100552371	rs73714255	C	G	6938.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:330,180:0.35:510
chr7	100552384	rs75597914	A	G	6572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.212;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-1.088;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:338,176:0.34:514
chr7	100552390	rs73714257	T	C	6701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.563;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=3.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=-1.387;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:334,176:0.35:510
chr7	100552412	rs73714259	T	C	6992.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:315,184:0.37:499
chr7	100552435	rs76244845	TC	AT	7535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=6.442;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=0.752;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:336,195:0.37:531
chr7	100552440	rs80290400	C	T	7254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.852;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=5.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.21;ReadPosRankSum=1.511;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:349,200:0.36:549
chr7	100552535	rs73163758	GT	AC	25057.77	.	AC=1;AF=0.500;AN=2;DB;DP=1299;JOINED;set=Intersection	GT:AD:AF:DP	0/1:673,622:0.48:1295
chr7	100552549	rs73163760	CT	AC	27287.77	.	AC=1;AF=0.500;AN=2;DB;DP=1492;JOINED;set=Intersection	GT:AD:AF:DP	0/1:785,703:0.47:1488
chr7	100552644	rs2904850	C	A	27425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759;ClippingRankSum=0.000;DB;DP=2349;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-0.853;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:1394,950:0.41:2344
chr7	100552657	rs75471530	A	G	33321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.033;ClippingRankSum=0.000;DB;DP=2312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=14.44;ReadPosRankSum=1.482;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:1413,894:0.39:2307
chr7	100552657	.	ACT	GCC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=1;MGOF=22;MMLQ=23;MQ=59.99;NF=401;NR=400;PP=2944;QD=20;SC=CCCACCCACCACTAGGACTTC;SbPval=0.51;Source=Platypus;TC=2219;TCF=1110;TCR=1109;TR=801;WE=100552683;WS=100552634;set=Platypus	GT:AD:AF:DP	1/0:1418,801:0.36:2219
chr7	100552659	rs78182596	T	C	34013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.516;ClippingRankSum=0.000;DB;DP=2311;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=14.75;ReadPosRankSum=1.497;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1415,891:0.39:2306
chr7	100552673	rs200599465	C	T	33418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=2317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=0.748;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:1416,895:0.39:2311
chr7	100552673	.	CAC	TAT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=25;MQ=60.0;NF=400;NR=399;PP=2944;QD=20;SC=ACTTCAGAGACACCAGTGGCC;SbPval=0.51;Source=Platypus;TC=2219;TCF=1115;TCR=1104;TR=799;WE=100552683;WS=100552634;set=Platypus	GT:AD:AF:DP	1/0:1420,799:0.36:2219
chr7	100552675	rs73163764	C	T	33418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.460;ClippingRankSum=0.000;DB;DP=2316;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=0.062;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:1409,903:0.39:2312
chr7	100552711	rs75799835	T	A	32763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=2210;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.84;ReadPosRankSum=-0.697;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:1342,866:0.39:2208
chr7	100552711	.	TCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=1;MGOF=25;MMLQ=20;MQ=59.99;NF=376;NR=393;PP=2944;QD=20;SC=CACCCTTACATCACGCAGGAC;SbPval=0.5;Source=Platypus;TC=2134;TCF=1028;TCR=1106;TR=769;WE=100552747;WS=100552700;set=Platypus	GT:AD:AF:DP	1/0:1365,769:0.36:2134
chr7	100552713	rs75130157	A	G	33161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;ClippingRankSum=0.000;DB;DP=2201;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.388;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:1326,873:0.40:2199
chr7	100552727	rs74529310	G	C	30376.77	.	AC=1;AF=0.500;AN=2;DB;DP=2133;set=Intersection	GT:AD:AF:DP	0/1:1272,859:0.40:2131
chr7	100552738	rs79874934	CA	TG	31409.77	.	AC=1;AF=0.500;AN=2;DB;DP=2037;JOINED;set=Intersection	GT:AD:AF:DP	0/1:1216,819:0.40:2035
chr7	100552788	rs73398800	C	T	14385.77	.	AC=1;AF=0.500;AN=2;DB;DP=1644;set=Intersection	GT:AD:AF:DP	0/1:928,713:0.43:1641
chr7	100552837	rs73714264	G	A	18065.77	.	AC=1;AF=0.500;AN=2;DB;DP=1196;set=Intersection	GT:AD:AF:DP	0/1:672,522:0.44:1194
chr7	100552854	rs73714265	G	A	16677.77	.	AC=1;AF=0.500;AN=2;DB;DP=992;set=Intersection	GT:AD:AF:DP	0/1:560,430:0.43:990
chr7	100552867	rs73714266	T	C	14030.77	.	AC=1;AF=0.500;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	0/1:470,366:0.44:836
chr7	100552915	rs2904852	A	C	20833.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr7	100552978	rs73163765	T	C	9071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.62;ReadPosRankSum=-0.353;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:274,241:0.47:515
chr7	100552984	rs73163766	T	C	9005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.90;ReadPosRankSum=-0.111;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:270,233:0.46:503
chr7	100553002	rs68094465	A	G	9136.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:271,251:0.48:522
chr7	100553073	rs73714269	T	A	7644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.42;ReadPosRankSum=1.954;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:214,201:0.48:415
chr7	100553077	rs73714270	A	C	7562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.86;ReadPosRankSum=1.357;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:204,197:0.49:401
chr7	100553117	rs73400705	G	A	2765.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:120,126:0.51:246
chr7	100555116	rs34281234	A	AT	1381.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.243;MLEAC=1;MLEAF=0.500;MQ=55.09;MQRankSum=-0.474;QD=13.29;ReadPosRankSum=2.744;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:16,88:0.85:104
chr7	100606332	rs368254939	AT	A	455.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.438;MLEAC=1;MLEAF=0.500;MQ=54.79;MQRankSum=-2.072;QD=7.58;ReadPosRankSum=-0.937;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:14,46:0.77:60
chr7	100606918	rs4316092	A	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	100607640	.	G	GCT	2257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=7.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.98;ReadPosRankSum=-1.233;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chr7	100607642	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=1;MGOF=28;MMLQ=29;MQ=60.0;NF=38;NR=8;PP=2962;QD=20;SC=TGACCTCTGCCCTCTTTCCCC;SbPval=0.9;Source=Platypus;TC=132;TCF=97;TCR=35;TR=46;WE=100607654;WS=100607632;set=Platypus	GT:AD:AF:DP	0/1:86,46:0.35:132
chr7	100607643	.	CTCT	C,CCT	2227.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=152;set=Intersection	GT:AF:DP	0/1:0.40:152
chr7	100607700	.	CAT	C	7924.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=2.127;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:160,197:0.55:357
chr7	100607707	.	T	G	8304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.80;ReadPosRankSum=1.372;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:173,208:0.55:381
chr7	100607709	.	C	CCT	8325.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;ClippingRankSum=0.000;DP=388;ExcessHet=3.0103;FS=1.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.51;ReadPosRankSum=1.335;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:177,210:0.54:387
chr7	100607851	rs6960854	C	G	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:106,120:0.53:226
chr7	100607871	rs6960868	C	T	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:83,89:0.52:172
chr7	100608154	rs10250885	G	A	6208.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.38;SOR=3.069;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	100608154	.	GGATAAGGGAGAG	AGATAAGGGAGAG,AGATGAGGCAGGC	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.3;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=24;MMLQ=28;MQ=59.99;NF=136,30;NR=30,0;PP=2962,2914;QD=20;SC=TATTCAGGGGGGATAAGGGAG;SbPval=0.36;Source=Platypus;TC=190;TCF=159;TCR=31;TR=166,30;WE=100608205;WS=100608144;set=Platypus	GT:AF:DP	0/1:0.87:190
chr7	100608158	rs79221376	A	G	1718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.749;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=44.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=1.069;SOR=4.474;set=HC	GT:AD:AF:DP	0/1:155,51:0.25:206
chr7	100608162	rs79761591	G	C	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=54.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.66;ReadPosRankSum=0.265;SOR=4.886;set=HC	GT:AD:AF:DP	0/1:168,60:0.26:228
chr7	100608165	rs76431635	A	G	2200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.182;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=63.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=-0.238;SOR=5.138;set=HC	GT:AD:AF:DP	0/1:169,63:0.27:232
chr7	100608166	rs75884804	G	C	2191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=65.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-0.046;SOR=5.199;set=HC	GT:AD:AF:DP	0/1:174,64:0.27:238
chr7	100608180	rs77646533	C	G	2929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.902;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=91.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=-0.019;SOR=5.235;set=HC	GT:AD:AF:DP	0/1:226,83:0.27:309
chr7	100608188	.	C	CT	3165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.392;ClippingRankSum=0.000;DP=345;ExcessHet=3.0103;FS=103.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.019;SOR=5.021;set=HC	GT:AD:AF:DP	0/1:252,93:0.27:345
chr7	100608190	.	C	T	3300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.624;ClippingRankSum=0.000;DP=355;ExcessHet=3.0103;FS=105.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.630;SOR=5.071;set=HC	GT:AD:AF:DP	0/1:261,94:0.26:355
chr7	100608194	.	C	CGTCTGGG	4014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.926;ClippingRankSum=0.000;DP=392;ExcessHet=3.0103;FS=123.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.687;SOR=5.349;set=HC	GT:AD:AF:DP	0/1:289,103:0.26:392
chr7	100608196	rs77373587	C	G	4257.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=15.425;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=72.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=1.182;SOR=5.635;set=HC	GT:AD:AF:DP	0/1:300,117:0.28:417
chr7	100608197	.	A	AGGG	4322.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.035;ClippingRankSum=0.000;DP=424;ExcessHet=3.0103;FS=72.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=1.552;SOR=5.675;set=HC	GT:AD:AF:DP	0/1:307,117:0.28:424
chr7	100608201	rs77005990	C	T	4405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=15.795;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=71.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.858;SOR=4.896;set=HC	GT:AD:AF:DP	0/1:324,133:0.29:457
chr7	100608247	rs73163788	T	C	11880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=6.258;QD=12.98;ReadPosRankSum=-0.374;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:591,324:0.35:915
chr7	100608255	rs79638688	C	G	13035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;ClippingRankSum=0.000;DB;DP=974;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=9.326;QD=13.40;ReadPosRankSum=1.032;SOR=1.023;set=HC	GT:AD:AF:DP	0/1:631,342:0.35:973
chr7	100608268	rs141757611	C	CCTTAACCCCTTGAT	16857.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.256;ClippingRankSum=0.000;DB;DP=1056;ExcessHet=3.0103;FS=8.562;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=14.181;QD=15.98;ReadPosRankSum=1.499;SOR=1.239;set=HC	GT:AD:AF:DP	0/1:668,387:0.37:1055
chr7	100608370	rs73714276	A	C	15504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=872;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=62.06;MQRankSum=15.017;QD=17.82;ReadPosRankSum=-0.049;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:451,419:0.48:870
chr7	100608375	rs75592954	G	A	15188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160;ClippingRankSum=0.000;DB;DP=807;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=62.01;MQRankSum=14.007;QD=18.87;ReadPosRankSum=-0.946;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:412,393:0.49:805
chr7	100608406	rs77168191	AT	GC	8881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.233;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=6.587;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=5.518;QD=17.31;ReadPosRankSum=-0.913;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:281,232:0.45:513
chr7	100608411	rs79831534	C	T	8726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=6.521;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=4.467;QD=17.88;ReadPosRankSum=-1.126;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:267,221:0.45:488
chr7	100608416	rs77070494	C	T	8096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=4.524;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.555;QD=17.68;ReadPosRankSum=-1.473;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:250,208:0.45:458
chr7	100608419	rs79505270	CT	GG	7877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=4.524;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=-1.626;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:238,199:0.46:437
chr7	100608423	rs77841377	C	T	7074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=5.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=-1.061;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:227,183:0.45:410
chr7	100608472	rs10251045	C	G	6158.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	100608493	rs77278976	T	C	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.259;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=0.941;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:69,52:0.43:121
chr7	100608498	rs77518728	A	C	1928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.918;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.07;ReadPosRankSum=0.513;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:63,50:0.44:113
chr7	100608502	rs76981580	T	C	1948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.835;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.56;ReadPosRankSum=0.052;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:61,50:0.45:111
chr7	100608572	rs10251414	G	C	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr7	100608573	rs10251415	G	C	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr7	100608710	rs62483706	A	C	5848.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:306,289:0.49:595
chr7	100608778	rs73163792	TC	CT	10758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=584;ExcessHet=3.0103;FS=2.415;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.49;ReadPosRankSum=-0.063;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:298,284:0.49:582
chr7	100608823	rs35790618	G	T	8925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.71;ReadPosRankSum=1.199;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:244,233:0.49:477
chr7	100608826	rs73163794	C	G	8910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.08;ReadPosRankSum=0.765;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:236,231:0.49:467
chr7	100608868	rs67377634	A	G	5448.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:157,166:0.51:323
chr7	100608884	rs73163797	G	A	4506.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:120,115:0.49:235
chr7	100608912	rs73163798	A	G	2946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.89;ReadPosRankSum=1.537;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:78,78:0.50:156
chr7	100608920	rs2904863	T	C	2877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.44;ReadPosRankSum=1.447;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:74,74:0.50:148
chr7	100608929	rs80040741	G	T	2703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=0.978;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:66,69:0.51:135
chr7	100608953	rs78404383	TA	CT	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.165;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.01;ReadPosRankSum=-0.161;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:43,45:0.51:88
chr7	100608958	rs76888130	T	C	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.34;ReadPosRankSum=-0.231;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:40,41:0.51:81
chr7	100608961	rs74773493	C	T	1479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.028;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=0.454;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:39,37:0.49:76
chr7	100608964	rs77850164	G	T	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.63;ReadPosRankSum=-0.416;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:39,39:0.50:78
chr7	100609486	rs62483707	C	G	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr7	100609966	rs10274451	T	C	14685.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr7	100609987	rs10274460	T	C	15511.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	100610026	rs10229209	A	C	11442.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:1,424:1.00:425
chr7	100610069	rs10258821	C	T	9425.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr7	100612766	rs71901679	CTGTCCAGGCACTT	C	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr7	100612786	rs73168325	G	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.137;MLEAC=1;MLEAF=0.500;MQ=61.36;MQRankSum=3.586;QD=13.05;ReadPosRankSum=-2.948;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:34,21:0.38:55
chr7	100612839	rs76449674	A	G	2591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.909;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=3.261;QD=16.83;ReadPosRankSum=2.652;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:86,68:0.44:154
chr7	100612842	rs79514982	T	C	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.339;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=3.296;QD=16.36;ReadPosRankSum=2.978;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:92,71:0.44:163
chr7	100612865	rs78097765	C	T	3728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=2.992;QD=19.32;ReadPosRankSum=1.227;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:100,93:0.48:193
chr7	100612869	rs74554402	G	A	3890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.955;QD=19.36;ReadPosRankSum=0.822;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:103,98:0.49:201
chr7	100612875	rs75162633	C	T	4063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.961;QD=18.99;ReadPosRankSum=0.611;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:110,104:0.49:214
chr7	100612898	rs73168327	T	C	4365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.974;QD=17.12;ReadPosRankSum=0.347;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:132,123:0.48:255
chr7	100612945	rs76619309	C	T	3820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=5.838;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.183;QD=14.58;ReadPosRankSum=0.198;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:152,110:0.42:262
chr7	100612952	rs79881008	G	A	4043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=5.075;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.179;QD=15.80;ReadPosRankSum=-0.568;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:148,108:0.42:256
chr7	100612955	rs150485202	A	ACTG	3726.73	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:143,104:0.42:247
chr7	100612961	rs78487486	G	C	3380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.757;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=9.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=0.459;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:146,88:0.38:234
chr7	100612969	rs73168328	A	G	2766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.083;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=9.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=2.511;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:139,69:0.33:208
chr7	100612996	rs76589634	A	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:106,55:0.34:161
chr7	100613010	rs80354726	T	C	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.801;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=4.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.985;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:98,48:0.33:146
chr7	100613011	rs79331440	G	A	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=3.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-1.002;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:97,47:0.33:144
chr7	100613018	rs78041688	A	C	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.337;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.95;ReadPosRankSum=-0.911;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:92,41:0.31:133
chr7	100613027	rs73168330	T	C	1167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=2.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=-0.533;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:89,35:0.28:124
chr7	100613059	rs66842488	GCCT	G	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:56,15:0.21:71
chr7	100613107	rs73168333	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.970;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr7	100613112	rs75250895	G	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-1.495;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr7	100613127	rs73168334	T	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.721;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr7	100615281	rs73400789	A	G	192.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.46;ReadPosRankSum=0.524;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr7	100615311	rs79784813	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.76;ReadPosRankSum=1.828;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr7	100615313	rs79548447	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.72;ReadPosRankSum=1.367;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	100615321	rs75376427	G	A	434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.76;ReadPosRankSum=0.268;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr7	100615353	rs73168339	C	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=0.439;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr7	100615359	rs73168341	A	G	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.55;ReadPosRankSum=-0.318;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr7	100615377	rs33957279	AC	A	457.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr7	100615387	rs75466554	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	100615445	rs5021607	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.551;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:56,9:0.14:65
chr7	100615449	rs5021606	C	G	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.052;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.694;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:56,9:0.14:65
chr7	100615453	rs5021605	T	C	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=5.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-1.456;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr7	100615454	rs5021604	G	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.723;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-1.441;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:53,9:0.15:62
chr7	100615458	rs5021603	A	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.728;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr7	100615460	rs5021602	A	G	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.906;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr7	100615461	rs5021601	T	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.999;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr7	100615500	rs77817912	A	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-1.476;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:45,5:0.10:50
chr7	100615503	rs33984975	CAG	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.678;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:46,5:0.10:51
chr7	100615531	rs79277318	T	G	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.563;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr7	100615533	rs75698243	C	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=-1.076;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr7	100616181	rs76074645	C	A	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=6.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-1.223;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:66,7:0.10:73
chr7	100616185	rs79851456	CA	TG	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.264;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.958;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:67,7:0.09:74
chr7	100616195	rs77180957	GC	CT	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=6.108;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.151;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:76,7:0.08:83
chr7	100616199	rs78022349	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.365;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.076;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:77,8:0.09:85
chr7	100616227	rs75588135	A	T	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=3.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.961;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chr7	100616229	rs78091742	G	C	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.677;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=-0.940;SOR=1.364;set=HC	GT:AD:AF:DP	0/1:77,9:0.10:86
chr7	100616245	rs79948354	C	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=9.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.134;SOR=2.217;set=HC	GT:AD:AF:DP	0/1:82,10:0.11:92
chr7	100616258	rs73168346	C	T	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.150;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:78,16:0.17:94
chr7	100616277	rs117288840	A	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.518;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:66,13:0.16:79
chr7	100616279	.	C	G	318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.333;SOR=1.181;set=HC	GT:AD:AF:DP	0/1:62,11:0.15:73
chr7	100616288	rs201235128	G	T	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=1.417;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:59,10:0.14:69
chr7	100616310	rs199943216	G	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.618;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:52,9:0.15:61
chr7	100616313	rs200896810	T	A	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.450;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr7	100616320	rs200695576	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=1.264;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:51,9:0.15:60
chr7	100616332	rs369342199	T	C	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.449;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr7	100616336	.	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=0.197;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr7	100616338	.	A	G	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.114;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr7	100616344	.	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.374;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:40,7:0.15:47
chr7	100616362	.	TAA	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.656;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr7	100616366	.	A	ACATGTTTGTTTATTTATT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.394;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=8.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.818;SOR=2.792;set=HC	GT:AD:AF:DP	0/1:36,5:0.12:41
chr7	100624718	rs4363124	G	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	100634476	rs6980143	C	G	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr7	100634640	rs1791	T	G	15489.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr7	100634905	.	AT	TC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=1;MGOF=37;MMLQ=23;MQ=55.57;NF=132;NR=21;PP=2944;QD=20;SC=ACCTCAGGCCATGTTGAAGAA;SbPval=1.0;Source=Platypus;TC=425;TCF=290;TCR=135;TR=153;WE=100634914;WS=100634882;set=Platypus	GT:AD:AF:DP	1/0:272,153:0.36:425
chr7	100634921	.	AG	GA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=32;MMLQ=23;MQ=57.18;NF=219;NR=70;PP=2944;QD=20;SC=AAGAATCTACAGCCTACCACA;SbPval=0.94;Source=Platypus;TC=607;TCF=398;TCR=209;TR=289;WE=100634941;WS=100634911;set=Platypus	GT:AD:AF:DP	0/1:318,289:0.48:607
chr7	100634933	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=32;MMLQ=25;MQ=57.68;NF=300;NR=119;PP=2962;QD=20;SC=CCTACCACAGGAGCCCGGGCT;SbPval=0.86;Source=Platypus;TC=748;TCF=485;TCR=263;TR=419;WE=100634941;WS=100634911;set=Platypus	GT:AD:AF:DP	0/1:329,419:0.56:748
chr7	100634964	rs4370452	C	A	38918.77	.	AC=2;AF=1.00;AN=2;DB;DP=1433;set=Intersection	GT:AD:AF:DP	1/1:1,1426:1.00:1427
chr7	100635375	rs10808115	A	C	42007.77	.	AC=2;AF=1.00;AN=2;DB;DP=1617;set=Intersection	GT:AD:AF:DP	1/1:2,1611:1.00:1613
chr7	100635591	rs10953312	C	A	19119.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr7	100635661	rs10953313	T	C	59190.77	.	AC=2;AF=1.00;AN=2;DB;DP=1333;set=Intersection	GT:AD:AF:DP	1/1:0,1332:1.00:1332
chr7	100635679	rs10953314	C	G	67303.77	.	AC=2;AF=1.00;AN=2;DB;DP=1648;set=Intersection	GT:AD:AF:DP	1/1:0,1646:1.00:1646
chr7	100647819	rs11766024	C	T	5406.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr7	100647875	rs11766048	C	A	7582.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr7	100647920	rs11772963	A	C	9433.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr7	100648029	rs10953315	G	A	10436.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr7	100648117	rs11766125	C	G	9850.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr7	100651855	rs12532750	A	G	4170.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	100652317	rs12540832	T	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	100656003	rs3924886	G	C	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	100658717	rs10229453	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	100675976	rs56103274	G	A	25990.77	.	AC=2;AF=1.00;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	1/1:0,954:1.00:954
chr7	100679902	rs55974941	A	G	30935.77	.	AC=2;AF=1.00;AN=2;DB;DP=1134;set=Intersection	GT:AD:AF:DP	1/1:0,1129:1.00:1129
chr7	100681762	rs10953316	A	G	31135.77	.	AC=2;AF=1.00;AN=2;DB;DP=1180;set=Intersection	GT:AD:AF:DP	1/1:0,1174:1.00:1174
chr7	100692341	rs4515470	C	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	100692680	rs10246021	T	G	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	100694854	rs67328257	G	A	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	100695058	rs6966570	T	C	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	100731505	rs4524722	C	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	100731829	rs6948536	T	C	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	100775087	rs143613360	A	AAAC	1248.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr7	100776931	rs2227684	G	A	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	100780176	rs2227694	A	G	2418.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	100781445	rs7242	T	G	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr7	100800131	rs4727481	T	C	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	100803710	rs2074684	C	T	13346.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr7	100816527	rs2009973	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	100817901	rs34985488	A	G	12130.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr7	100818193	rs2015923	G	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	100839667	rs140645427	C	T	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	100841389	rs2158612	A	C	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr7	100841863	rs3735337	T	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	100844011	rs12674140	C	T	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	100845051	rs73408451	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	100845660	rs72181952	ACTCTCCTC	A	11681.73	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr7	100965096	rs11369267	A	AG	2710.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	101090831	rs17135418	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	101199257	rs4729728	G	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	101200669	rs36008849	A	AG	11089.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	101200727	rs17393069	G	A	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr7	101200835	rs7809926	A	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	101265350	rs4263675	T	C	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	101272465	rs848644	T	C	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	101459161	rs28650922	T	C	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	101671585	rs448877	A	G	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	101713590	rs377612	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	101870599	rs430841	A	G	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	101892121	rs410825	G	A	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	101892328	rs368214	C	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	101936555	rs3215392	CCTA	C	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	101953534	rs809120	T	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	102036769	rs56992893	CGGAGACTGCGTATGCG	C	188.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr7	102038153	.	CTGTGTG	C,CTG	5766.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=269;set=Intersection	GT:AF:DP	1/2:0.18,0.82:146
chr7	102045170	rs62482945	A	T	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	102046070	rs6971258	T	A	368.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	102046359	rs6955864	G	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	102063363	rs143532608	GGAAACATCC	G	2549.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	102063527	rs7384395	G	C	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr7	102065322	rs1983476	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	102086891	rs12672132	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	102105984	rs10953368	T	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	102106857	rs140459331	CTTTA	C	1085.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	102107697	rs11761361	G	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	102108900	rs62483806	G	A	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	102111936	rs60871950	G	A	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	102112980	rs3800987	G	A	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr7	102113093	rs3800988	T	C	16627.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr7	102113563	rs61229695	TG	T	4411.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr7	102120821	rs11767570	T	G	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	102136550	rs77782294	G	A	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.91;QD=26.53;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	102147148	.	T	C	218.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.40;QD=21.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	102235692	.	G	GCT	1568.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.09;QD=52.29;SOR=6.869;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	102235910	.	G	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.652;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.10;MQRankSum=0.258;QD=9.99;ReadPosRankSum=-1.479;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr7	102246500	rs144574884	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:8,38:0.83:46
chr7	102257215	.	GT	G	421.73	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.17;QD=32.44;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	102279621	rs201558735	C	T	3903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.666;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=-13.484;QD=4.09;ReadPosRankSum=-0.270;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:693,261:0.27:954
chr7	102279670	.	A	C	2011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;ClippingRankSum=0.000;DP=613;ExcessHet=3.0103;FS=2.961;MLEAC=1;MLEAF=0.500;MQ=47.49;MQRankSum=-5.048;QD=3.29;ReadPosRankSum=-0.513;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:460,151:0.25:611
chr7	102318861	rs374405684	G	A	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:256,222:0.46:478
chr7	102319015	rs138714346	G	T	2358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=0.020;QD=4.41;ReadPosRankSum=-1.221;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:390,145:0.27:535
chr7	102343967	rs4729850	A	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	102389833	rs28695887	G	C	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	102401989	rs199674245	TA	T	107.19	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr7	102417637	.	T	C	192	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=28;MQ=46.64;NF=13;NR=0;PP=192;QD=17.4439394267;SC=CCTTTTATTTTAAGTTTGTAA;SbPval=1.0;Source=Platypus;TC=47;TCF=41;TCR=6;TR=13;WE=102417645;WS=102417627;set=Platypus	GT:AD:AF:DP	1/0:34,13:0.28:47
chr7	102417753	rs201667800	T	G	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=48.33;MQRankSum=-1.446;QD=2.49;ReadPosRankSum=0.827;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:79,24:0.23:103
chr7	102574999	rs3832497	TGAA	T	12560.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr7	102616469	rs2228687	G	A	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	102668001	rs7805950	A	C	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	102722505	rs4729868	G	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	102722516	rs4729869	T	C	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	102724372	rs4729871	A	T	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	102739043	rs4729879	C	T	805.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.442;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.183;MLEAC=2;MLEAF=1.000;MQ=50.76;MQRankSum=2.706;QD=20.64;ReadPosRankSum=-1.176;SOR=0.311;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr7	102739085	.	A	G	163	.	AC=1;AF=0.500;AN=2;BRF=0.5;FR=0.5000;HP=2;HapScore=2;MGOF=14;MMLQ=28;MQ=43.3;NF=3;NR=10;PP=163;QD=15.2131701959;SC=CCCAGCTGCTAAATTTAAACA;SbPval=0.49;Source=Platypus;TC=40;TCF=8;TCR=32;TR=13;WE=102739093;WS=102739075;set=Platypus	GT:AD:AF:DP	0/1:27,13:0.33:40
chr7	102743893	rs3181009	C	T	130.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	102755330	rs4729882	A	G	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	102760722	rs1974715	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	102825871	rs4317507	T	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	102825987	.	G	GA	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-2.158;QD=1.23;ReadPosRankSum=1.586;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:103,29:0.22:132
chr7	102874366	rs3987883	C	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	102883497	.	TA	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-1.664;QD=2.43;ReadPosRankSum=-0.089;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr7	102920515	rs114408985	G	T	2126.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;MQRankSum=-0.078;QD=25.02;ReadPosRankSum=1.335;SOR=0.364;set=HC	GT:AD:AF:DP	1/1:1,84:0.99:85
chr7	102948040	rs11489600	T	C	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	102950717	rs113156207	G	A	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	102961209	rs72437079	CAT	C	56.73	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr7	103007949	rs4520097	A	C	2425.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.521;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.388;MLEAC=2;MLEAF=1.000;MQ=59.18;MQRankSum=-0.215;QD=25.27;ReadPosRankSum=-0.622;SOR=0.531;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr7	103018016	rs10273883	A	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	103019613	rs12705120	A	G	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	103033573	rs13240456	T	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	103132295	.	TCTCTCTCTCACACACACACACA	T	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-1.034;QD=3.38;ReadPosRankSum=0.754;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr7	103132297	.	TCTCTCTCACACACACACACA	T	241.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	103132355	rs17151558	G	T	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	103138517	rs2711885	C	G	4683.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	103162370	rs10282605	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	103175965	rs362706	C	T	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr7	103191428	rs362721	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	103198251	rs6964157	C	A	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	103202406	.	CAA	C	1240.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.762;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.880;QD=17.72;ReadPosRankSum=2.296;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:13,57:0.81:70
chr7	103205617	rs362725	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	103206001	rs35268159	G	GA	797	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:9,48:0.84:57
chr7	103207234	rs362726	T	C	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	103234985	.	C	CT	31	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=11;HapScore=2;MGOF=2;MMLQ=25;MQ=60.6;NF=0;NR=4;PP=31;QD=10.0;SC=AAAAGCTGTGCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=11;TCF=0;TCR=11;TR=4;WE=103234993;WS=103234975;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr7	103417134	rs262338	G	T	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=1.896;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	103417139	rs13243284	A	C	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=1.967;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr7	103417557	rs11496125	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	103557697	rs711443	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	103629803	.	T	TGCCGCC,TGCC	4285.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=133;set=Intersection	GT:AF:DP	1/1:1.00:96
chr7	103767352	rs181033863	A	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	103807202	rs2307405	G	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	103848094	rs2075217	T	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	103848102	rs971813	C	G	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.54;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	103848133	rs10953406	C	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	103848413	rs2075218	G	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	103969194	rs71794813	CAGGAGG	C	1738.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr7	104110392	rs4727601	C	T	6239.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	104110415	rs10216054	G	A	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	104263425	rs1073012	T	C	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	104377453	rs4236573	A	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	104748407	rs11399039	G	GT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.793;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.785;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr7	104767295	rs3815256	A	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	104785779	rs7780887	T	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	104800939	rs4730071	C	T	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	104808386	rs143276009	G	GA	693.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	104844416	rs34581245	CA	C	883.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.565;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.597;QD=13.39;ReadPosRankSum=-0.092;SOR=0.459;set=HC	GT:AD:AF:DP	1/1:7,59:0.89:66
chr7	104845124	rs2237611	A	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	104845962	rs72367486	TCTCACACACACA	TCA,T	302.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	0/1:0.51:37
chr7	104846173	rs55712418	A	G	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr7	104846375	rs139433699	A	AAC	12172.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:42,395:0.90:437
chr7	105122891	rs57080279	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=5.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-1.323;SOR=1.660;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr7	105146593	rs11421080	A	AT	4918.73	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr7	105205917	rs864687	A	C	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr7	105205955	rs861761	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	105250824	rs10216257	G	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:1,61:0.98:62
chr7	105250904	rs10215543	AG	GA	7975.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr7	105283222	rs112748194	G	A	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	105733037	rs4434555	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	105733619	rs176486	G	A	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	105738368	rs12705333	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	105893704	rs41276166	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	106508978	rs849389	A	G	10421.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr7	106508987	rs849390	T	C	10418.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr7	106513011	rs1129293	C	T	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr7	106519943	rs849370	T	C	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	106768839	rs34736852	G	GAC	3481.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	106799997	rs257376	G	A	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr7	106826381	rs7794598	C	T	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr7	106826439	rs7794965	G	A	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	106851754	rs1018946	T	C	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	106897037	rs17428126	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	106897237	rs17349904	A	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	106898870	.	T	TTC,TTCTC	879	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=16;MQ=61.12;NF=0,0;NR=60,60;PP=440,879;QD=7.4;SC=AGAATGATAATTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=109;TCF=1;TCR=108;TR=60,60;WE=106898878;WS=106898860;set=Platypus	GT:AF:DP	0/1:0.55:109
chr7	106898895	rs142552893	T	TCTCA,TCA	670.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=99;set=Intersection	GT:AF:DP	0/1:0.58:57
chr7	106965039	rs6466164	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	106965091	rs7807648	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	107002573	rs12536603	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	107002806	rs2269970	A	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	107053157	rs372240169	CA	C	42.75	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr7	107114400	rs11453718	A	AT	191.06	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr7	107194911	rs2520270	C	A	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	107198405	rs2520272	A	T	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	107207695	rs4730250	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	107208250	rs1468336	T	C	7961.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr7	107216738	rs10276604	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	107217068	rs3839819	TG	T	2991.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	107255548	rs3801944	T	C	2674.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	107301969	rs200483647	A	AG	3312.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,106:0.99:107
chr7	107303622	rs2248464	A	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=2.780;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	107303628	rs2248465	C	T	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.93;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	107344921	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=1.687;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr7	107392891	rs10594774	CTG	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=6.320;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.740;QD=0.34;ReadPosRankSum=-1.023;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:107,14:0.12:121
chr7	107414419	rs41669	A	G	6025.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr7	107531832	rs11373214	G	GC	1940.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	107542327	.	A	G	997.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	107542662	rs10250718	T	C	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	107545586	rs17412104	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	107545799	rs10263341	T	C	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr7	107559722	rs8721	A	T	724.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	107564366	rs7561	T	G	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr7	107564536	rs79073119	TGG	T	61.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=-0.355;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr7	107564539	rs3213673	G	A	1840.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.89;ReadPosRankSum=0.177;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:8,58:0.88:66
chr7	107564542	rs3213674	G	T	1990.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.70;ReadPosRankSum=1.164;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:6,61:0.91:67
chr7	107569517	rs1131398	A	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	107575792	rs200599445	GTTTTTTTTTTTTT	G	649.74	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=7.533;MLEAC=2;MLEAF=1.000;MQ=62.50;MQRankSum=0.693;QD=38.22;SOR=3.229;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr7	107577448	rs34337564	CT	C	1811.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	107577456	rs56285692	T	C	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	107580839	rs2158836	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	107593989	rs20556	T	C	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr7	107613379	rs2701034	G	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	107615506	rs11770141	C	T	4275.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	107616049	rs11770289	C	A	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	107616068	rs11760290	T	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	107616078	rs11770342	G	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.32;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	107618420	rs11769960	A	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	107626770	rs25659	G	A	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr7	107747081	rs5886439	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=1.542;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr7	107791018	rs443552	G	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	107800953	rs12670313	A	G	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr7	107808639	rs12537654	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	107815858	rs11983886	T	A	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr7	107818851	rs428459	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	107820911	rs414077	G	T	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	107822198	rs2839850	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr7	107822396	rs2142325	G	A	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	107824556	rs10561815	TTA	T	543.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	107824678	rs6970656	A	G	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	107824889	rs401433	C	G	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	107825108	rs427909	T	C	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	107831520	rs6962066	T	C	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	107834613	rs6958498	G	C	8326.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr7	107834624	rs6978315	T	C	8106.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr7	107834734	rs404287	C	T	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr7	107836117	rs35825013	GT	G	1125.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	107838464	rs381318	G	T	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr7	107838637	rs388557	C	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	107849908	rs1269621	G	A	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	107874906	rs1269632	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	107875170	rs1269633	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	108524444	rs11397223	C	CA	792.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-1.177;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:45,67:0.60:112
chr7	110303527	rs1044729	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	111032822	rs78635244	G	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	111368454	rs34597439	G	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	111372095	.	T	C	21	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=2;HapScore=2;MGOF=17;MMLQ=23;MQ=60.0;NF=2;NR=0;PP=21;QD=27.8856062736;SC=TGGCTGCGTTTGTGCAGGAGG;SbPval=1.0;Source=Platypus;TC=2;TCF=2;TCR=0;TR=2;WE=111372103;WS=111372089;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	111376840	rs2301678	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	111379634	rs10246451	C	A	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	111379706	rs2074116	A	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr7	111382324	rs3757648	C	T	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	111474749	rs3214145	TA	T	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.417;QD=1.96;ReadPosRankSum=-0.737;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr7	111487026	rs10275038	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	111503660	rs59559298	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	111512589	rs10257550	G	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	111535497	rs2074131	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	111535863	rs2074132	T	C	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	111629025	rs17401943	T	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	111846342	rs138530312	G	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	112098865	rs145177050	A	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	112555294	.	G	GA	617.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.912;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=-0.019;SOR=0.283;set=HC	GT:AD:AF:DP	1/1:7,38:0.84:45
chr7	112575149	rs10231221	A	C	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	112724417	rs2256044	A	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	112724525	rs1608890	A	G	5761.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr7	112757387	rs1051878	T	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	112758324	rs2462665	G	C	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	112758694	rs2250343	A	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	113518502	rs2974938	A	T	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	113519719	rs2974944	A	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	113519796	rs2974942	C	T	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	114138751	rs2040658	G	C	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	114210814	rs17137124	T	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	114296545	rs881732	A	C	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr7	114303491	rs34735973	A	AT	398.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.844;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.760;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=1.049;SOR=0.199;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr7	114303617	rs35518337	CT	C	338.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.10;ReadPosRankSum=1.062;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr7	114304563	rs1378771	C	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	114304630	rs1378772	A	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	114619598	rs2594449	C	A	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	114620082	rs117374702	G	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	115850675	rs11549785	C	T	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	115850937	rs1866961	T	C	241.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	116140076	rs2535220	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	116140275	rs11767363	T	C	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	116140524	rs2270188	G	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	116145957	rs4730743	A	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	116165360	rs1997623	A	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	116165463	rs2742125	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	116364823	rs34822187	CA	C	1279.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	116364958	.	A	G	377.77	.	AC=2;AF=1.00;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	116435768	rs41736	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	116436022	rs2023748	G	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr7	116436097	rs41737	G	A	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	116550456	rs2074025	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	116596697	rs6960131	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	116598735	rs6466595	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	116600049	rs10262671	A	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	116607501	rs10259502	T	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	116660464	rs5886844	AC	A	1062.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	116838311	rs193573	G	A	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr7	117188660	.	ATG	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.286;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr7	117188736	rs4727853	C	A	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=-3.198;QD=13.50;ReadPosRankSum=0.200;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:33,30:0.48:63
chr7	117188750	rs201880593	C	T	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=50.22;MQRankSum=-2.328;QD=2.75;ReadPosRankSum=3.135;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr7	117188797	rs201434579	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.00;MQRankSum=-2.866;QD=2.18;ReadPosRankSum=0.695;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr7	117188840	rs377319489	AGTT	A	238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.129;MLEAC=1;MLEAF=0.500;MQ=51.14;MQRankSum=-2.709;QD=4.12;ReadPosRankSum=-2.844;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr7	117188850	rs79074685	G	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=8.757;MLEAC=1;MLEAF=0.500;MQ=52.29;MQRankSum=-3.504;QD=7.55;ReadPosRankSum=-5.004;SOR=1.897;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr7	117450792	rs2111204	A	C	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	117451124	rs6973399	T	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	117824239	rs2896242	G	C	5315.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr7	117825549	rs9655829	T	G	62.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	117825681	rs45604739	A	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	117825834	rs2041527	A	G	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	117832138	rs1061731	G	A	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	117867960	rs60066163	C	CT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.14;ReadPosRankSum=0.988;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr7	120428607	rs41622	G	A	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	120428799	rs41623	C	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	120450658	rs7805733	G	A	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr7	120450678	.	TCA	T	1597.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.281;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.412;QD=27.55;ReadPosRankSum=1.764;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:2,56:0.97:58
chr7	120480275	rs79707924	T	C	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	120590786	rs11408222	C	CG	363.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	120596743	.	CA	C	95.73	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr7	120608216	rs79589210	C	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	120613419	rs2721369	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr7	120633917	rs79499160	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	120655676	rs4730984	G	T	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	120704289	rs2721375	C	T	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	120739962	rs199844199	GTT	G,GT	1412.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.42;MQRankSum=0.430;QD=19.09;ReadPosRankSum=-0.344;SOR=0.963;set=HC	GT:AD:AF:DP	1/2:3,51,20:0.69,0.27:74
chr7	120740103	rs798937	G	T	4080.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr7	120740225	rs1917112	C	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	120764477	rs1524498	G	C	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr7	120764573	rs798948	C	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.19;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	120765954	rs798949	T	C	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr7	120776097	rs41281692	C	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	120781884	rs11979314	G	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	120876835	rs35793694	A	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr7	120901695	rs10953934	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	120906699	rs57977421	C	A	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	120906744	rs798918	T	C	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	120965464	.	G	GTACC	1336.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	120969769	rs2908004	G	A	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	120969825	rs17143291	C	A	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	120969969	rs142005327	G	GCT	127	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	120979089	rs2707466	C	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	121000021	rs3837124	A	AT	89.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	121080929	rs6961822	A	G	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	121081052	rs6962156	C	T	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	121081115	rs6466786	A	C	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr7	121164363	rs2896305	C	G	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	121616250	rs4629793	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr7	121680783	rs71951795	CGTGT	C	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=34.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr7	121738926	.	TA	T	91.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;ClippingRankSum=-0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.82;ReadPosRankSum=-0.435;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr7	121942832	rs10685687	G	GACA	5405.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr7	121942847	rs6968786	G	C	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr7	121943642	rs111662975	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.11;QD=43.05;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr7	121943681	rs62476008	T	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.45;QD=34.77;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	121944527	rs11761299	T	C	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	121965437	rs17369598	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	122033379	rs2074588	A	G	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	122078414	rs2074589	T	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	122091566	rs3764810	C	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	122131535	rs1476589	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	122303321	rs2251761	C	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr7	122757719	.	TA	T	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.260;QD=3.65;ReadPosRankSum=0.465;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr7	122769378	rs72164434	CTGTGTGTGTGTGTGTG	C,CTG	2933.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=4.834;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=40.75;SOR=1.527;set=HC	GT:AD:AF:DP	1/2:1,22,49:0.31,0.68:72
chr7	122769394	rs140521959	G	C	1257.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.698;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.47;ReadPosRankSum=0.423;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr7	122769396	rs201876307	G	C	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.103;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:58,20:0.26:78
chr7	122769616	rs13243580	T	C	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	122769628	rs13229376	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	122788665	rs12706498	G	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	122809111	rs1880178	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	122809234	rs2140516	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	123097380	rs12673749	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:9,28:0.76:37
chr7	123097468	rs10234745	T	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr7	123102829	rs34691578	G	A	440.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr7	123119990	rs10500091	T	C	3386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=0.638;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:105,163:0.61:268
chr7	123120070	rs12155170	C	T	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr7	123150194	rs1917708	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr7	123152019	rs10255061	C	T	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,97:0.61:159
chr7	123152035	rs10270705	T	C	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:81,127:0.61:208
chr7	123190739	.	G	GT	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=0.866;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	123196787	rs113495801	C	CA	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr7	123256427	rs6962756	C	T	5045.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	123264804	rs11769381	C	T	1588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.657;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.287;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:222,93:0.30:315
chr7	123269118	rs4731112	G	C	15074.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr7	123269976	rs3993666	G	GGC	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	123295964	rs7779099	C	T	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	123296320	rs12538876	C	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr7	123301940	rs7809453	A	G	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr7	123324546	rs5887151	AAT	A	322.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr7	123324745	rs147291543	CCAG	C	451.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:33,14:0.30:47
chr7	123329060	rs3035629	GTCTC	G,GTC	1190.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.69;QD=30.53;SOR=0.811;set=HC	GT:AD:AF:DP	1/2:0,26,13:0.67,0.33:39
chr7	123329267	rs74521781	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr7	123334696	rs35280100	GT	G	569.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr7	123336804	rs10270793	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr7	123360352	rs12674456	T	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.61;ReadPosRankSum=-1.128;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:40,77:0.66:117
chr7	123360398	rs34980321	CA	C	436.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.883;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:47,47:0.50:94
chr7	123388732	rs1054706	G	A	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:156,88:0.36:244
chr7	123594206	rs2285996	G	A	8961.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	123594903	rs6972388	A	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	124387092	rs3735270	C	G	8919.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	124387374	rs724356	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	124462661	rs17246404	C	T	8878.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr7	124467470	rs10244817	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr7	124475296	rs142780416	TAAACA	T,TAAACAAAACA	3736.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;set=Intersection	GT:AF:DP	1/2:0.45,0.55:92
chr7	124477182	rs7787804	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	124486980	rs7794637	T	C	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr7	124499002	rs6977407	AT	CA	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	124533680	rs4377885	C	T	12186.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr7	124533740	rs10954048	C	T	15570.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,594:1.00:594
chr7	124540841	rs4383910	A	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	124540872	rs7782354	C	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	124540969	rs7782525	C	G	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr7	125588500	.	CAAGCAAGA	C	1293	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=67;MMLQ=24;MQ=55.31;NF=12;NR=11;PP=1293;QD=56.5652173913;SC=AGCAAGCAAGCAAGCAAGAAA;SbPval=0.25;Source=Platypus;TC=29;TCF=12;TCR=17;TR=23;WE=125588534;WS=125588495;set=Platypus	GT:AD:AF:DP	1/0:6,23:0.79:29
chr7	125588518	rs148322820	AGAAAAAGG	A	1646.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;MQRankSum=4.587;QD=41.17;ReadPosRankSum=0.624;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr7	125588728	rs17149089	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	125753485	rs1419526	C	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	125753551	rs1419527	A	G	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.38;SOR=1.383;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr7	125753556	rs5887285	A	AG	7905.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	125753603	rs1419528	A	G	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=24.63;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr7	125753636	rs1419529	A	G	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr7	125753737	rs4395830	A	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	126079144	rs712723	A	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:59,94:0.61:153
chr7	126544012	rs769199	T	C	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:56,27:0.33:83
chr7	127026342	rs6962137	G	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	127222157	rs3735644	G	A	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:174,83:0.32:257
chr7	127224193	rs3735643	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr7	127224286	rs3735642	A	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:136,100:0.42:236
chr7	127228728	rs12536382	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr7	127230276	rs1419428	A	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr7	127250907	rs712700	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,71:0.61:117
chr7	127251188	rs712701	T	G	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:43,89:0.67:132
chr7	127251792	rs327518	G	A	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr7	127253714	rs3835004	A	AG	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr7	127254457	rs594141	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr7	127255285	rs698406	C	G	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr7	127255795	rs327516	C	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr7	127347733	rs11972774	G	C	3498.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:99,160:0.62:259
chr7	127347820	rs201396839	AGTGTGTGT	A	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;QD=31.39;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:4,26:0.87:30
chr7	127361269	rs918793	G	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr7	127447499	rs325440	A	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr7	127669584	rs73238074	T	C	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:147,247:0.63:394
chr7	127669857	rs3823994	A	T	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:96,167:0.63:263
chr7	127714491	rs225241	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr7	127721507	rs322825	T	C	4755.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:111,227:0.67:338
chr7	127725711	rs59096474	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr7	127950725	rs12850	G	A	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	127953238	rs73230638	G	A	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.404;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:187,124:0.40:311
chr7	127957602	rs2290225	A	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	127981205	rs73230660	C	T	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:300,195:0.39:495
chr7	127991133	rs891215	G	A	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	127992437	rs1651945	C	G	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr7	128000091	rs359642	G	A	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	128034467	rs72624969	C	T	3114.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:73,146:0.67:219
chr7	128034767	rs4731447	A	C	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr7	128035152	rs28580600	G	A	5195.77	.	AC=1;AF=0.500;AN=2;DB;DP=910;set=Intersection	GT:AD:AF:DP	0/1:601,307:0.34:908
chr7	128049701	rs2288553	T	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr7	128095876	rs2732393	A	G	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	128102508	rs10647404	C	CTCGT,CTCTT	591.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/2:0.60,0.40:15
chr7	128108916	rs4731457	T	C	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:93,153:0.62:246
chr7	128109001	.	G	C	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DP=353;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.717;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:261,91:0.26:352
chr7	128128133	rs2732429	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.91;QD=33.11;SOR=6.593;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	128133984	rs2562741	G	A	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	128220111	rs139965573	G	T	1231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=-0.119;QD=6.07;ReadPosRankSum=0.505;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:133,70:0.34:203
chr7	128248198	rs201811442	G	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=4.280;MLEAC=1;MLEAF=0.500;MQ=46.10;MQRankSum=-2.605;QD=6.97;ReadPosRankSum=0.357;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:73,40:0.35:113
chr7	128298920	rs114191334	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr7	128299034	rs4728127	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:6,25:0.81:31
chr7	128312450	rs11769769	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr7	128312463	rs74343948	C	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr7	128312703	rs67851440	AG	A	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=0.568;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr7	128315588	rs13308199	T	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	128315672	rs78302479	A	ATTC	4053.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.591;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:241,114:0.32:355
chr7	128315791	rs61738927	C	G	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:275,141:0.34:416
chr7	128315882	rs17169357	C	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.611;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=0.669;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:75,53:0.41:128
chr7	128317658	rs6467210	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr7	128317882	rs7797745	T	C	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr7	128317931	rs139645567	CTG	C	779.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chr7	128318006	rs67602452	G	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr7	128319982	rs2290229	A	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,46:0.31:149
chr7	128322918	rs4554406	A	G	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr7	128323034	rs1109552	A	G	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:240,115:0.32:355
chr7	128355458	rs3807127	A	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.998;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=8.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.324;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:19,46:0.71:65
chr7	128358839	rs17162583	T	C	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:47,70:0.60:117
chr7	128358865	rs77362226	G	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:66,80:0.55:146
chr7	128371206	rs339066	G	A	6943.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:178,322:0.64:500
chr7	128371298	rs339065	C	T	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:79,112:0.59:191
chr7	128388648	rs2290228	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:228,107:0.32:335
chr7	128447054	rs35456642	C	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr7	128450532	rs7799186	G	A	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,27:0.35:77
chr7	128451353	rs111409895	C	CAGAGAGCCTGGGA	3333.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	128455079	rs117033934	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr7	128455767	rs4728137	C	G	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	128455916	rs2270590	G	A	1880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-1.905;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:46,90:0.66:136
chr7	128475588	rs149474376	C	T	5268.77	.	AC=1;AF=0.500;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	0/1:224,249:0.53:473
chr7	128477865	rs7787924	G	A	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:46,66:0.59:112
chr7	128478103	rs2291562	C	T	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:51,94:0.65:145
chr7	128480123	rs2291563	C	A	5868.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:190,284:0.60:474
chr7	128480791	rs2291564	C	G	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:73,148:0.67:221
chr7	128481196	rs2291565	T	C	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr7	128482440	rs2291566	C	G	4131.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:154,192:0.55:346
chr7	128483227	rs2291567	T	C	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr7	128484816	rs3734973	A	G	7479.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:211,337:0.61:548
chr7	128486252	rs138334624	T	TGGGCAGGTGGGCAGGGCC	7383.73	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:109,202:0.65:311
chr7	128486363	rs34373805	C	T	4787.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:117,208:0.64:325
chr7	128486446	rs75770585	C	T	5331.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:116,245:0.68:361
chr7	128487866	rs2249128	T	C	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	128487893	rs2291568	G	A	2610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.064;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.873;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:65,126:0.66:191
chr7	128490553	rs13227216	T	C	1372.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:44,59:0.57:103
chr7	128491166	rs3816883	T	C	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr7	128491603	rs3816884	T	C	8759.77	.	AC=1;AF=0.500;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	0/1:274,420:0.61:694
chr7	128492527	rs76972396	G	A	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:24,63:0.72:87
chr7	128492557	rs61044960	GG	CA	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;JOINED;set=Intersection	GT:AD:AF:DP	0/1:53,97:0.65:150
chr7	128495338	rs3816885	C	T	6539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.406;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.076;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:188,314:0.63:502
chr7	128495562	rs3778759	G	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr7	128498156	rs373614270	C	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:124,72:0.37:196
chr7	128498630	rs113516962	TAC	T	728.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.884;QD=14.87;ReadPosRankSum=0.514;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:18,31:0.63:49
chr7	128498634	rs28727967	C	T	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.097;QD=4.61;ReadPosRankSum=0.280;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr7	128506970	rs4323418	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr7	128508965	rs3736617	A	T	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr7	128527093	rs11982744	T	G	6631.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:155,301:0.66:456
chr7	128531072	rs3734971	T	A	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr7	128532980	rs7782976	T	C	5766.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:173,263:0.60:436
chr7	128533514	rs34061445	T	TC	5673.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	128542982	rs11975930	G	A	2277.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:54,99:0.65:153
chr7	128543678	rs6955736	C	T	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:99,134:0.58:233
chr7	128544133	rs56144153	G	T	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:119,183:0.61:302
chr7	128547512	rs6948542	G	A	2748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=0.049;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:80,133:0.62:213
chr7	128548463	rs7786945	A	C	19785.77	.	AC=1;AF=0.500;AN=2;DB;DP=1464;set=Intersection	GT:AD:AF:DP	0/1:541,922:0.63:1463
chr7	128550577	rs75709678	C	T	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr7	128550680	rs11335250	GC	G	3706.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	128550894	rs1609545	G	A	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.001;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.90;ReadPosRankSum=2.275;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr7	128553288	rs192473750	G	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr7	128587035	rs192829776	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr7	128610484	rs1691779	A	G	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	128629993	rs41274158	A	G	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:94,37:0.28:131
chr7	128630227	rs1154329	C	T	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:68,156:0.70:224
chr7	128694976	rs2242028	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr7	128767250	rs61740497	G	A	7853.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:199,351:0.64:550
chr7	128784723	.	A	G	171	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=11;NR=0;PP=171;QD=18.7064738679;SC=GGGCTCCTGCACGGCGCGGCT;SbPval=1.0;Source=Platypus;TC=11;TCF=11;TCR=0;TR=11;WE=128784731;WS=128784713;set=Platypus	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	128785008	rs13243618	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr7	128802936	rs919551	T	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	128804218	rs2566892	G	A	2322.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	128843169	rs2566871	C	T	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr7	128843410	rs143083812	C	T	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=1.540;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:155,93:0.38:248
chr7	128845018	rs2703091	C	T	11134.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr7	128845277	rs2075777	G	C	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	128845325	rs2566872	G	A	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	128845907	rs2075779	T	C	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr7	128846328	rs2228617	G	C	11753.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr7	128846469	rs2735842	A	G	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	129029093	rs10954231	A	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	129040018	rs17552411	T	C	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	129045601	.	A	T	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.601;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=0.378;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr7	129049507	rs6467244	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	129094195	rs581829	T	C	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr7	129102743	rs34275118	A	G	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.34;ReadPosRankSum=-1.862;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:281,138:0.33:419
chr7	129125750	rs692625	G	A	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr7	129142694	rs691332	C	G	3754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.430;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:208,194:0.48:402
chr7	129142775	rs610591	G	A	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:56,58:0.51:114
chr7	129297332	rs1882094	T	G	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:179,89:0.33:268
chr7	129297447	rs11446444	A	AT	161.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=8.96;ReadPosRankSum=1.189;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr7	129349101	rs11769146	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr7	129350170	rs3736626	A	C	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:31,66:0.68:97
chr7	129351444	rs1962038	C	G	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr7	129356939	rs12154342	T	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr7	129410144	rs4467881	G	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	129410195	rs4541843	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,63:0.68:93
chr7	129520689	rs75328071	A	G	2658.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:79,123:0.61:202
chr7	129658655	rs2242488	A	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr7	129664312	rs1464890	T	C	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:67,109:0.62:176
chr7	129668931	rs11974220	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.074;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr7	129680994	.	AT	GT	2473	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.59;NF=0,8;NR=53,34;PP=2473,1497;QD=46.7547169811;SC=ATGTGTGTGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=103;TCF=0;TCR=103;TR=53,42;WE=129681002;WS=129680961;set=Platypus	GT:AD:AF:DP	0/1:79,42:0.35:121
chr7	129680994	.	AT	ATGT	2473	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=24;MQ=60.59;NF=0,8;NR=53,34;PP=2473,1497;QD=46.7547169811;SC=ATGTGTGTGTATGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=103;TCF=0;TCR=103;TR=53,42;WE=129681002;WS=129680961;set=Platypus	GT:AD:AF:DP	0/1:50,53:0.51:103
chr7	129680994	rs112881994	A	G,ATG	1775.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.186;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=2.333;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.82;MQRankSum=0.782;QD=21.92;ReadPosRankSum=1.614;SOR=0.382;set=HC	GT:AD:AF:DP	1/2:10,26,45:0.32,0.56:81
chr7	129710524	rs1062154	G	C	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr7	129736880	rs12531444	G	A	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=1.791;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:145,73:0.33:218
chr7	129806441	rs4507710	C	T	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr7	129813738	rs3823482	T	C	4040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=-1.215;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:96,187:0.66:283
chr7	129846823	.	T	TA	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.844;QD=5.68;ReadPosRankSum=0.955;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	129847482	rs2727837	C	T	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	129906915	rs7788519	G	A	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr7	129910818	rs3816830	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	129913516	rs71178569	CT	C	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.595;QD=2.93;ReadPosRankSum=-0.621;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:115,68:0.37:183
chr7	129913520	rs10257530	T	C	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=9.730;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.870;QD=4.00;ReadPosRankSum=0.297;SOR=1.293;set=HC	GT:AD:AF:DP	0/1:107,83:0.44:190
chr7	129916390	rs59738706	A	AAC	1199.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,36:0.49:73
chr7	129916515	rs17590	T	C	9892.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr7	129932949	rs73146784	G	T	1461.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr7	129962360	rs1569133	A	G	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:1,373:1.00:374
chr7	129986226	rs6955991	T	A	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.57;SOR=5.376;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	129986236	rs6955995	T	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.66;SOR=4.768;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	129986338	rs6973851	C	T	8265.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr7	129986521	rs6467306	T	C	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	129987766	rs375233670	CT	C	1009.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:24,36:0.60:60
chr7	129987782	rs67016751	C	T	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr7	129989878	rs7808823	T	C	1200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=4.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-0.429;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:126,71:0.36:197
chr7	130002199	rs6955110	A	G	1433.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:42,69:0.62:111
chr7	130002317	rs1544705	T	C	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:284,136:0.32:420
chr7	130002467	rs6955723	C	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:33,60:0.65:93
chr7	130003458	rs17164847	A	G	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:72,119:0.62:191
chr7	130003487	rs17164851	G	A	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:49,83:0.63:132
chr7	130007381	rs11761888	T	C	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.45;ReadPosRankSum=0.151;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:30,79:0.72:109
chr7	130007388	rs17854248	G	T	2988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.02;ReadPosRankSum=0.076;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:29,74:0.72:103
chr7	130007459	rs4537231	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr7	130007901	rs2241272	A	T	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	130007913	rs2241273	T	G	6475.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr7	130008159	rs2302823	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:88,47:0.35:135
chr7	130008180	rs60493599	A	G	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:59,98:0.62:157
chr7	130008219	rs17164865	T	G	3619.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:98,161:0.62:259
chr7	130008285	rs17164867	T	C	5917.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:191,283:0.60:474
chr7	130020569	rs7790688	A	G	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr7	130021488	rs1126899	G	C	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:429,215:0.33:644
chr7	130022041	rs968404	C	T	4019.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.37;ReadPosRankSum=0.381;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:132,193:0.59:325
chr7	130023179	rs6972781	A	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:135,86:0.39:221
chr7	130023539	rs12706927	C	T	16221.77	.	AC=1;AF=0.500;AN=2;DB;DP=1267;set=Intersection	GT:AD:AF:DP	0/1:493,766:0.61:1259
chr7	130024308	rs3043750	A	ACC	941.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:66,31:0.32:97
chr7	130025895	rs2239606	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr7	130027633	rs10263705	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:167,87:0.34:254
chr7	130041638	rs17164953	T	C	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr7	130080812	rs2287371	T	G	9667.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:230,439:0.66:669
chr7	130136902	rs2072573	G	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:45,46:0.51:91
chr7	130138155	rs6968284	A	G	11910.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr7	130140766	rs765205	C	A	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.87;ReadPosRankSum=-1.228;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:71,79:0.53:150
chr7	130147307	rs2302826	T	G	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:60,71:0.54:131
chr7	130147427	.	G	GT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=1.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=2.248;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:73,28:0.28:101
chr7	130148507	rs2072575	G	A	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:22,59:0.73:81
chr7	130148562	rs58927323	T	TTCTTAGGAAGTG	2760.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	130148903	rs12706941	A	G	1713.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:46,73:0.61:119
chr7	130149061	rs12706942	G	C	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:66,141:0.68:207
chr7	130150705	rs12706944	G	A	2661.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:86,122:0.59:208
chr7	130288598	.	CA	C	259.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.820;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:58,41:0.41:99
chr7	130292210	rs1386960	C	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr7	130292531	rs12706946	T	C	3014.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:65,128:0.66:193
chr7	130297119	rs34699820	GA	G	2260.73	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:120,149:0.55:269
chr7	130298550	rs4731696	C	T	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:50,73:0.59:123
chr7	130354106	rs10232683	G	C	3568.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:81,155:0.66:236
chr7	130356691	.	CTTTAT	C	199	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=24;MQ=60.0;NF=0;NR=4;PP=199;QD=52.0;SC=GAACTATTCACTTTATTTTAT;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=4;WE=130356703;WS=130356681;set=Platypus	GT:AD:AF:DP	1/0:10,4:0.29:14
chr7	130418689	rs111400400	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	130418720	rs111359117	AT	CG	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	130418744	rs111731678	T	A	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	130418883	.	C	CGAGCGCCGTCCGAACGCGGCCGGCCGCGGGCGACGGAGTTCCCGGGAGCGTCCGTCCCGCAGCCTCG	1172.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.91;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	131060277	rs3823557	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:112,63:0.36:175
chr7	131155588	rs1733861	G	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=0.302;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr7	131190554	rs7799613	C	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr7	131190696	rs6651125	T	C	3891.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:112,186:0.62:298
chr7	131191536	rs3212303	A	G	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,54:0.68:80
chr7	131191554	rs56231781	TC	T	1270.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr7	131191609	rs11770771	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr7	131195535	rs3847113	G	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,15:0.31:48
chr7	131195712	rs12670788	G	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:106,73:0.41:179
chr7	131195959	rs3735035	C	T	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:157,114:0.42:271
chr7	131241029	.	G	GGGCGAC	768.73	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr7	131815118	rs10954359	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	131815220	rs10954360	G	A	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr7	131815310	rs2671103	A	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	131815343	rs10954361	G	A	4379.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr7	131832627	rs1450882	A	G	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr7	131849204	rs896167	T	A	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr7	131908468	rs2290232	T	C	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	131908566	rs2290233	A	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	131915507	rs1868781	A	G	5356.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr7	131926112	rs3925378	C	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	132192231	rs156960	A	G	3038.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:76,144:0.65:220
chr7	132192295	rs156961	G	A	5922.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:111,268:0.71:379
chr7	132192949	rs156962	T	C	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:149,253:0.63:402
chr7	132409606	rs594208	T	C	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr7	132766584	rs11769814	C	G	5938.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	132938039	rs10641096	C	CCCTT	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	132990498	rs10229242	G	A	262.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	132990536	rs5887620	C	CT	707.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	133580447	rs2042456	G	A	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:102,183:0.64:285
chr7	133580545	rs2042455	A	G	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:20,39:0.66:59
chr7	133602538	rs73156934	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:50,19:0.28:69
chr7	133682181	rs3735050	T	C	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:95,166:0.64:261
chr7	133692667	rs11769734	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr7	133749164	rs6953296	G	A	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:163,87:0.35:250
chr7	133821619	rs13246630	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr7	133868368	rs1222420	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr7	133868507	rs1222419	C	T	8171.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr7	133881919	rs10611703	ATG	A	1185.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.195;MLEAC=2;MLEAF=1.000;MQ=61.02;MQRankSum=0.676;QD=25.78;ReadPosRankSum=0.030;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:2,44:0.96:46
chr7	133933671	rs34245697	G	GT	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=9.333;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.509;QD=2.84;ReadPosRankSum=-0.258;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:84,40:0.32:124
chr7	133943037	rs61753515	T	C	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-1.575;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:223,133:0.37:356
chr7	133979545	rs2504	A	T	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.56;ReadPosRankSum=0.036;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr7	133979552	rs2505	C	T	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.90;ReadPosRankSum=0.030;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:23,30:0.57:53
chr7	133979578	rs2241336	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:35,43:0.55:78
chr7	133979795	rs1421484	T	C	1808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.90;ReadPosRankSum=-0.829;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:63,89:0.59:152
chr7	133980999	rs1862050	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr7	133981021	rs1862051	G	A	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr7	133981227	rs1862052	G	A	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:43,82:0.66:125
chr7	133984127	rs2075371	A	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:46,100:0.68:146
chr7	133984432	rs2075372	C	T	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr7	133984878	rs34664116	G	A	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:83,159:0.66:242
chr7	133989543	rs447266	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr7	133989816	rs2544217	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr7	134133291	rs2734653	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:81,41:0.34:122
chr7	134133620	rs17660462	T	G	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:60,109:0.64:169
chr7	134134329	rs200157549	A	AC	1339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.742;QD=22.33;ReadPosRankSum=-0.212;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:20,40:0.67:60
chr7	134135751	rs2734649	C	T	15567.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr7	134136584	rs1732035	A	C	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	134143690	rs1424426	T	C	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,116:0.64:180
chr7	134143958	rs759853	G	A	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,55:0.67:82
chr7	134212741	rs2037005	A	G	1511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=1.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.08;ReadPosRankSum=-0.715;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:25,69:0.73:94
chr7	134215259	rs1722886	A	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,35:0.71:49
chr7	134215403	rs1722883	T	C	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:89,149:0.63:238
chr7	134217729	rs3735041	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:70,42:0.38:112
chr7	134221694	rs706159	G	A	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr7	134221826	rs28545160	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.427;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=34.558;MLEAC=1;MLEAF=0.500;MQ=48.03;MQRankSum=-7.346;QD=2.40;ReadPosRankSum=-0.465;SOR=3.100;set=HC	GT:AD:AF:DP	0/1:147,32:0.18:179
chr7	134223127	rs4732035	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:81,41:0.34:122
chr7	134225788	rs4732036	C	T	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:69,120:0.63:189
chr7	134225827	rs4728329	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	134250320	rs56374050	C	T	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.84;ReadPosRankSum=-0.052;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:26,55:0.68:81
chr7	134250322	rs4732038	A	C	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.48;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	134254427	rs782538	G	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	134261097	rs2161803	C	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr7	134261674	rs6979933	C	T	1546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.191;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.746;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-2.094;QD=5.02;ReadPosRankSum=-2.007;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:217,91:0.30:308
chr7	134261819	rs41274188	G	C	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:252,114:0.31:366
chr7	134262441	rs10241998	T	C	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:139,92:0.40:231
chr7	134262650	rs17167934	T	C	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:142,66:0.32:208
chr7	134264233	rs72495463	C	CT	623.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=4.642;QD=3.50;ReadPosRankSum=-0.170;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:121,57:0.32:178
chr7	134264286	rs6467538	C	T	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:43,25:0.37:68
chr7	134576441	rs6953822	T	C	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	134612759	rs11438725	G	GT	2818.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	134632411	rs141179317	C	T	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.941;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:65,105:0.62:170
chr7	134653279	rs140065054	A	G	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:71,145:0.67:216
chr7	134673958	rs12671813	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr7	134678253	rs2348049	T	A	2461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-0.214;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:64,116:0.64:180
chr7	134678523	rs2252826	C	T	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr7	134694773	rs34139471	CT	C	425.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.529;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:11,39:0.78:50
chr7	134694939	rs6958457	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	134701856	rs4236655	G	C	12921.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr7	134719551	rs9656447	C	G	8976.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr7	134730151	rs2348054	G	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	134730252	rs117168663	C	T	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.527;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:196,81:0.29:277
chr7	134730441	rs2348055	A	G	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	134849280	rs292501	T	A	12192.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr7	134852432	rs292505	C	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	134871775	rs292557	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.398;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.256;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:84,31:0.27:115
chr7	134872003	rs292558	C	G	45.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chr7	134873355	rs292564	G	A	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:156,68:0.30:224
chr7	134877935	rs292573	A	G	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,28:0.37:75
chr7	134878237	rs2278128	G	C	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:41,92:0.69:133
chr7	134879830	rs292575	G	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:38,24:0.39:62
chr7	134880884	rs292578	G	C	2964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-0.230;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:307,167:0.35:474
chr7	134882592	rs292581	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr7	134882680	rs292582	A	G	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr7	134882693	rs292583	T	C	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr7	134889141	rs292592	G	A	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:131,85:0.39:216
chr7	134890855	rs292593	T	G	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:72,27:0.27:99
chr7	134891961	rs2278130	G	A	5390.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:140,243:0.63:383
chr7	134895532	rs292601	T	C	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:259,168:0.39:427
chr7	134896383	rs292602	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr7	134925241	rs34330846	C	CA	3006.73	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:140,181:0.56:321
chr7	134925411	rs7805859	G	A	7444.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:168,337:0.67:505
chr7	134930169	rs113633449	A	AGAG	5567.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.273;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.42;MQRankSum=0.778;QD=27.98;ReadPosRankSum=0.218;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:3,196:0.98:199
chr7	134962043	rs10239950	C	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:157,66:0.30:223
chr7	135047703	rs6969632	T	C	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr7	135048033	rs2059367	G	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	135082751	rs3812281	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	135095270	rs2696877	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	135099044	.	T	TA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.213;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr7	135262681	rs12707242	C	T	4045.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:168,200:0.54:368
chr7	135285788	rs4296989	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	135286170	rs35467082	G	A	3636.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:127,172:0.58:299
chr7	135304273	rs7810767	G	C	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	135311120	rs7810260	G	A	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:51,113:0.69:164
chr7	135311167	rs10234309	G	A	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	135328110	rs10260691	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr7	135330829	rs62479523	C	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:75,34:0.31:109
chr7	135345319	rs10258155	A	G	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=-1.231;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:180,81:0.31:261
chr7	135347239	rs141207942	G	GC	826.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:107,47:0.31:154
chr7	135375921	rs56341417	C	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.242;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-4.336;QD=1.04;ReadPosRankSum=3.076;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:189,51:0.21:240
chr7	135375925	rs35065926	A	C	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-4.381;QD=1.00;ReadPosRankSum=3.362;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:193,51:0.21:244
chr7	135378854	rs3800763	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:65,32:0.33:97
chr7	135387473	rs3112345	A	G	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:77,28:0.27:105
chr7	135387495	rs3112346	A	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:98,39:0.28:137
chr7	135387656	rs3112347	G	A	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,35:0.33:105
chr7	135392876	rs3110800	T	C	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:327,202:0.38:529
chr7	135406176	rs4596594	A	G	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:165,81:0.33:246
chr7	135412273	rs3112369	T	C	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=0.735;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:180,94:0.34:274
chr7	135413626	rs3807338	C	T	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.999;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr7	135421790	rs4338044	A	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.282;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:104,31:0.23:135
chr7	136587843	rs10488598	T	C	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr7	136588109	rs6963819	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr7	136939582	rs1162122	G	T	5190.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr7	137080244	rs7792568	T	G	5391.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:99,238:0.71:337
chr7	137092745	rs3217275	CA	C	2404.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,82:0.63:130
chr7	137092781	rs7800454	T	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr7	137097086	rs1731959	G	C	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	137128830	rs1918837	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,35:0.56:63
chr7	137154572	rs2293546	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	137304765	.	G	GCA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.77;ReadPosRankSum=-0.693;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr7	137531147	rs71815938	GT	G	20473.73	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr7	137590369	rs273968	G	A	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	137600690	rs273957	C	T	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	137607217	.	C	T	764	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5002;HP=2;HapScore=1;MGOF=22;MMLQ=24;MQ=59.52;NF=26;NR=4;PP=764;QD=26.6257070849;SC=TATATATATACACACATATAT;SbPval=0.45;Source=Platypus;TC=35;TCF=31;TCR=4;TR=30;WE=137607241;WS=137607207;set=Platypus	GT:AD:AF:DP	0/1:5,30:0.86:35
chr7	137607233	.	C	T	609	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=22;MMLQ=23;MQ=59.67;NF=33;NR=7;PP=609;QD=16.0942803137;SC=TATATATATACACACACACAC;SbPval=0.67;Source=Platypus;TC=50;TCF=40;TCR=10;TR=40;WE=137607241;WS=137607207;set=Platypus	GT:AD:AF:DP	1/1:10,40:0.80:50
chr7	137612913	rs66593747	CTGG	C	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	137641123	rs274003	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	137642481	.	C	G	800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.535;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=8.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.848;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:194,57:0.23:251
chr7	137642759	rs274004	T	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	137773291	rs2120846	T	G	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:154,107:0.41:261
chr7	137773563	rs2166188	T	G	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr7	137773587	rs35802315	C	CGTGT	408.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr7	137776411	rs202194493	C	CA	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.093;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr7	137782593	rs200250280	CTT	C	158.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.611;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=13.19;ReadPosRankSum=-0.654;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:4,8:0.67:12
chr7	137798593	rs2306847	A	T	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-1.921;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:101,64:0.39:165
chr7	137801413	rs1872929	A	C	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=1.284;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:95,39:0.29:134
chr7	137801444	rs1872930	C	T	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:80,41:0.34:121
chr7	138145778	rs112619223	C	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:39,54:0.58:93
chr7	138188932	rs10488642	A	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr7	138200117	rs3757381	A	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	138229990	rs6959574	G	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	138258467	rs141000079	C	CCTT	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=6.472;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=4.744;QD=7.53;ReadPosRankSum=-1.181;SOR=1.829;set=HC	GT:AD:AF:DP	0/1:72,24:0.25:96
chr7	138261319	rs59147816	TAAC	T	655.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr7	138264340	rs111433097	A	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr7	138268563	rs3213902	A	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr7	138279228	rs1439793	A	T	381.78	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr7	138281355	rs1659832	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr7	138281906	rs1659831	T	C	7187.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr7	138305743	rs3734946	A	T	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr7	138305782	rs3734945	T	C	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.39;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr7	138305806	rs3734944	T	C	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:54,100:0.65:154
chr7	138310629	rs1673162	G	A	10972.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr7	138312122	rs2305816	A	C	1729.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:177,93:0.34:270
chr7	138356659	rs5887893	AG	A	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	138356662	rs5011821	G	A	900.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	138356663	rs5011820	G	C	933.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.69;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	138356664	rs5887894	C	CA	894.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	138356730	rs202122915	T	TG	4096.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	138356732	.	CTG	GCT	1663	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=27;MQ=60.0;NF=59;NR=18;PP=1663;QD=22.4216607125;SC=CCCTCAGTTGCTGTGTTCACG;SbPval=0.58;Source=Platypus;TC=87;TCF=66;TCR=21;TR=77;WE=138356742;WS=138356722;set=Platypus	GT:AD:AF:DP	1/1:10,77:0.89:87
chr7	138356733	rs5887896	TG	T	4128.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=2.597;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	138363767	rs10250576	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:42,57:0.58:99
chr7	138391554	rs73166921	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr7	138391596	rs12707394	A	G	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr7	138394695	rs141195167	G	GCAAT	742.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr7	138417718	rs3807154	A	G	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:72,153:0.68:225
chr7	138418910	rs1026435	G	A	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:391,187:0.32:578
chr7	138419085	rs1037692	A	G	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr7	138429851	rs6467797	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr7	138434066	rs11324444	GA	G	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-2.014;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr7	138441124	rs296910	A	G	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:96,189:0.66:285
chr7	138444737	rs7810721	C	T	1077.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr7	138453892	rs374123555	GAA	G	1643.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.411;QD=21.35;ReadPosRankSum=-0.246;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:12,65:0.84:77
chr7	138455988	rs10258719	A	G	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr7	138485954	rs6945259	G	T	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr7	138486096	rs61729750	G	C	15044.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr7	138555816	rs35334186	GC	G	527.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr7	138564140	rs117138030	G	A	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr7	138583840	rs7802841	C	A	6941.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	138732274	rs3087999	C	G	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:138,68:0.33:206
chr7	138732457	rs3735008	G	A	2547.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:256,141:0.36:397
chr7	138732497	rs3735007	G	A	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:254,152:0.37:406
chr7	138739816	rs10261597	C	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	138740037	rs2297236	G	C	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.97;ReadPosRankSum=0.141;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:148,88:0.37:236
chr7	138740186	rs2297237	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=-2.318;SOR=1.461;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr7	138740195	rs2297238	T	G	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.11;ReadPosRankSum=-1.045;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chr7	138740224	rs2297239	T	C	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr7	138740240	rs2297240	T	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr7	138851714	rs186507557	GT	TA	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.183;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.561;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.356;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr7	138950972	.	CAA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.687;QD=3.18;ReadPosRankSum=-0.429;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr7	138957240	.	TTATG	T	1215.73	.	AC=1;AF=0.500;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr7	138978318	.	G	GT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=0.605;QD=3.79;ReadPosRankSum=1.063;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr7	139026152	rs10265	T	G	8156.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr7	139077240	rs4732370	C	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr7	139077317	rs4732371	T	A	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:2,42:0.95:44
chr7	139097282	rs11409457	A	AC	1763.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.137;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=-1.526;SOR=0.533;set=HC	GT:AD:AF:DP	1/1:9,91:0.91:100
chr7	139102490	rs3778931	A	G	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.64;SOR=1.813;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr7	139102490	.	ATCAGAGGA	GTCAGAGGA,GTCAGAGGT	984	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=31,20;NR=71,40;PP=403,984;QD=4.29187463282;SC=TGATGTGTCAATCAGAGGATA;SbPval=0.53;Source=Platypus;TC=102;TCF=31;TCR=71;TR=102,60;WE=139102506;WS=139102480;set=Platypus	GT:AF:DP	0/1:1.00:102
chr7	139102498	rs73154180	A	T	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.80;ReadPosRankSum=-2.149;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:29,68:0.70:97
chr7	139102555	rs73154181	T	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr7	139138551	rs10954649	C	T	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr7	139138871	rs11763327	T	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	139138950	rs17160911	C	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr7	139313488	rs41274215	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr7	139313816	rs10276928	C	T	3010.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:97,138:0.59:235
chr7	139316360	rs28579164	C	T	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:62,121:0.66:183
chr7	139316502	rs28611119	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:36,74:0.67:110
chr7	139605869	rs35857550	CT	C	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.918;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:83,28:0.25:111
chr7	139613072	rs6464448	A	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,56:0.38:148
chr7	139653196	rs5768	A	C	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr7	139662072	rs2072179	T	C	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:59,72:0.55:131
chr7	139724169	rs13760	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr7	139734069	rs35456446	C	T	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.441;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:46,85:0.65:131
chr7	139737421	rs35076815	C	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr7	139737798	rs67617970	T	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr7	139754451	rs2362460	T	C	5306.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:107,232:0.68:339
chr7	139757911	rs10252898	C	G	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:64,102:0.61:166
chr7	139762273	rs737321	A	G	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	139762282	rs6945590	A	G	1737.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.48;ReadPosRankSum=-1.245;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:2,72:0.97:74
chr7	139797225	rs3214226	TA	T	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	139813249	rs138557624	TGTGGCATAAAACACA	T	1527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.868;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.497;QD=7.64;ReadPosRankSum=2.269;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:151,49:0.24:200
chr7	139820354	rs59225858	C	G	4863.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:113,224:0.66:337
chr7	139827494	rs62491412	T	C	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:49,63:0.56:112
chr7	140036999	rs4332050	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr7	140037053	rs11331602	CT	C	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.018;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr7	140044979	rs6974016	C	T	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	140048262	rs66700092	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.457;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr7	140048690	.	G	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.07;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=22;QD=18.9237375157;SC=TGATTTTACAGTTAAACATCT;SbPval=0.33;Source=Platypus;TC=8;TCF=1;TCR=7;TR=3;WE=140048698;WS=140048680;set=Platypus	GT:AD:AF:DP	1/0:5,3:0.38:8
chr7	140051063	rs12703774	C	T	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:73,121:0.62:194
chr7	140051091	rs12703775	G	A	3967.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:102,178:0.64:280
chr7	140051722	rs3936105	C	T	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr7	140051848	rs12665885	C	T	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=1.026;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:61,73:0.54:134
chr7	140069361	rs4448174	G	C	2381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.192;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:88,118:0.57:206
chr7	140080087	rs62490396	C	G	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:113,168:0.60:281
chr7	140082363	rs6968618	G	A	6204.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr7	140155778	rs2363826	G	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:124,64:0.34:188
chr7	140159721	rs10243155	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.474;QD=1.53;ReadPosRankSum=0.509;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:85,17:0.17:102
chr7	140159798	rs11763850	A	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.572;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.654;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr7	140173010	rs58539466	C	CA	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.648;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.180;QD=4.36;ReadPosRankSum=1.799;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:85,60:0.41:145
chr7	140173102	rs17161569	T	G	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.618;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.446;QD=7.11;ReadPosRankSum=-0.994;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:178,115:0.39:293
chr7	140175141	rs139052285	AAAAC	A	3221.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:172,92:0.35:264
chr7	140178975	.	T	C	1794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=1.275;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:45,83:0.65:128
chr7	140218464	rs6852	C	A	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-1.066;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:138,72:0.34:210
chr7	140225750	rs2252397	G	A	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr7	140244560	rs2293177	C	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:35,61:0.64:96
chr7	140244627	rs2293176	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr7	140255623	rs4342501	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr7	140255657	rs11763409	C	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,39:0.65:60
chr7	140257841	rs10252031	A	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	140257907	rs12704002	C	T	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:125,56:0.31:181
chr7	140258000	rs12704003	T	C	2673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.842;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:318,163:0.34:481
chr7	140269625	rs587373	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr7	140301731	rs269243	G	T	20843.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:0,772:1.00:772
chr7	140395554	.	C	CT	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.324;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:132,41:0.24:173
chr7	140396472	rs57717083	C	CG	1577.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	140404562	.	G	GT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=0.499;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr7	140426257	rs3829814	A	G	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr7	140434597	rs60814637	G	GA	728.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=9.103;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.35;ReadPosRankSum=0.542;SOR=0.048;set=HC	GT:AD:AF:DP	1/1:4,38:0.90:42
chr7	140477005	rs71645984	T	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=1.623;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	140477974	.	C	G	129.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	140702199	rs10654746	C	CT,CTT	1006.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.252;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.53;MQRankSum=0.972;QD=14.18;ReadPosRankSum=-1.249;SOR=1.514;set=HC	GT:AD:AF:DP	1/2:11,23,37:0.32,0.52:71
chr7	140774467	rs477223	C	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:97,64:0.40:161
chr7	141137460	rs13233459	C	T	4187.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr7	141137554	rs1727491	A	G	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr7	141137554	.	ACG	GCA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=25;MQ=60.0;NF=64;NR=53;PP=2947;QD=20;SC=AGGTAAGGCTACGGGCTCGGC;SbPval=0.62;Source=Platypus;TC=123;TCF=65;TCR=58;TR=117;WE=141137564;WS=141137544;set=Platypus	GT:AD:AF:DP	1/1:6,117:0.95:123
chr7	141137556	rs1619668	G	A	6422.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	141362431	rs6949729	T	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr7	141362693	rs2269984	A	T	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,62:0.41:152
chr7	141386264	rs35707772	AC	A	2916.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	141439003	rs75358342	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-2.357;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:36,65:0.64:101
chr7	141442213	rs2301924	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr7	141463914	rs765007	T	C	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	141464765	rs2270009	C	T	9992.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr7	141478308	rs2233998	T	C	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr7	141478574	rs2234001	G	C	8560.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	141478800	rs2234002	G	A	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr7	141490107	rs2234012	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	141490238	rs2227264	G	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	141536351	rs10657416	C	CAG	2136.73	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:50,82:0.62:132
chr7	141536855	rs7806186	C	A	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:22,33:0.60:55
chr7	141536866	rs7806190	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr7	141537116	rs7805542	G	A	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:45,79:0.64:124
chr7	141537169	rs7806657	C	T	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr7	141537237	rs7806797	C	T	2513.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:52,109:0.68:161
chr7	141537297	rs3823668	T	G	4835.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:110,227:0.67:337
chr7	141537541	rs3800990	A	G	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr7	141537735	rs12669721	T	G	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	141537942	rs145160047	T	TCAA	1899.73	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:206,60:0.23:266
chr7	141537968	rs11765575	A	G	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.553;QD=5.18;ReadPosRankSum=0.430;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:173,70:0.29:243
chr7	141538089	rs75612846	TG	T	447.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr7	141538606	rs186017477	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr7	141538741	rs73171695	T	C	2306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-1.395;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:62,109:0.64:171
chr7	141538812	rs36029840	TA	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.069;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:82,32:0.28:114
chr7	141538865	rs12703412	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	141539075	rs62478495	G	A	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=1.411;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:38,55:0.59:93
chr7	141539400	rs6946479	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr7	141540680	rs10454323	G	A	2904.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr7	141540741	rs10454324	G	A	6310.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:167,292:0.64:459
chr7	141540774	rs10454325	A	C	6750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-0.671;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:197,322:0.62:519
chr7	141635534	rs200523567	T	TC	568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.671;QD=5.58;ReadPosRankSum=-1.653;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:69,33:0.32:102
chr7	141635538	rs5888023	C	CA	1712.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,73:0.69:106
chr7	141672604	rs10246939	T	C	9224.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr7	141673345	rs713598	C	G	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:152,241:0.61:393
chr7	141730618	rs111279755	CTG	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.239;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=5.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.129;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:65,10:0.13:75
chr7	141738504	rs8180874	C	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	141740077	rs2960753	G	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr7	141740146	rs117964015	A	G	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr7	141740409	rs10215116	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	141747658	rs2960746	A	G	13137.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr7	141750316	rs6948116	C	T	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	141750472	rs62477572	A	G	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr7	141752006	rs71166554	AT	A	2888.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:5,141:0.97:146
chr7	141752213	rs2961085	C	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	141755795	rs2961081	C	T	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr7	141755987	rs2961080	G	T	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr7	141758074	rs2961078	T	C	4904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=55.36;MQRankSum=-12.110;QD=10.78;ReadPosRankSum=-1.280;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:213,242:0.53:455
chr7	141759274	rs2960758	T	C	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.91;QD=28.62;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr7	141759340	rs2961074	T	C	3723.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr7	141760293	rs2961073	TG	GC	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr7	141785567	.	C	G	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.784;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=5.515;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-8.997;QD=2.20;ReadPosRankSum=-3.147;SOR=1.768;set=HC	GT:AD:AF:DP	0/1:69,14:0.17:83
chr7	141794263	rs3087322	A	G	2398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-2.980;QD=13.48;ReadPosRankSum=-1.397;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:63,115:0.65:178
chr7	141794763	rs138070479	ATT	A	2121.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=26.19;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:3,78:0.96:81
chr7	141794790	rs4259331	A	G	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	141796048	rs7807614	G	C	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr7	141796081	rs7807635	G	A	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.70;MQRankSum=0.552;QD=15.99;ReadPosRankSum=-0.033;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:26,60:0.70:86
chr7	141796131	rs6975672	G	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=47.88;MQRankSum=-0.670;QD=5.74;ReadPosRankSum=0.590;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:103,51:0.33:154
chr7	141796250	rs6976953	C	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr7	141796289	rs36061384	C	G	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr7	141805522	rs36052135	G	A	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:126,187:0.60:313
chr7	141819908	rs78877860	G	T	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:14,36:0.72:50
chr7	141831170	rs12154281	G	A	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,58:0.69:84
chr7	141831236	.	C	CAAAACA	7194.73	.	AC=1;AF=0.500;AN=2;DP=274;set=Intersection	GT:AD:AF:DP	0/1:92,164:0.64:256
chr7	141831661	rs4473940	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr7	141837340	rs77600046	T	C	1157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.26;ReadPosRankSum=-1.966;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:118,67:0.36:185
chr7	141838362	rs6464465	C	G	8037.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	141840581	rs73158439	T	C	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	141854436	rs61281471	A	T	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr7	141854659	rs11770705	A	G	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	141857846	rs7811706	A	G	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr7	141860199	rs60403744	A	G	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	141860861	rs34106041	T	C	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	141861072	rs12703440	C	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	141867422	rs61125234	G	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr7	141870134	rs56365887	G	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr7	141871251	rs7779634	A	T	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:82,178:0.68:260
chr7	141872523	rs73547325	T	A	3694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=-1.391;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:107,176:0.62:283
chr7	141873000	rs9986803	T	A	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr7	141885944	rs111646116	CT	C	994.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.783;QD=7.54;ReadPosRankSum=1.040;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:48,84:0.64:132
chr7	141896059	rs4236467	A	G	3414.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr7	141897595	rs3110843	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr7	141898023	rs4260813	C	A	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr7	141898522	rs2960768	T	A	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr7	141898680	rs2961065	T	C	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	141899660	rs11402165	C	CT	1012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=0.628;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:38,72:0.65:110
chr7	141901322	rs6963175	G	A	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	141901506	rs6464469	C	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr7	141951998	rs1052410	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr7	141952023	rs1052408	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:69,28:0.29:97
chr7	141954706	rs201234582	T	TA	57.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr7	141954822	rs1894316	G	A	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.562;QD=5.13;ReadPosRankSum=1.392;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:176,73:0.29:249
chr7	141955128	rs1894317	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:98,56:0.36:154
chr7	141957424	rs12531935	G	A	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:214,125:0.37:339
chr7	141957504	rs7786497	A	G	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:118,203:0.63:321
chr7	142001030	rs56095598	A	G	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr7	142013384	rs361401	G	C	15098.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr7	142028108	rs361428	A	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr7	142028542	.	G	T	664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-24.221;QD=1.08;ReadPosRankSum=4.374;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:556,57:0.09:613
chr7	142028546	.	TC	CT	643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DP=606;ExcessHet=3.0103;FS=0.914;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-24.040;QD=1.07;ReadPosRankSum=3.699;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:547,57:0.09:604
chr7	142028551	.	CA	GG	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=593;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-23.771;QD=1.15;ReadPosRankSum=4.115;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:535,56:0.09:591
chr7	142028555	.	C	T	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DP=577;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-23.443;QD=1.27;ReadPosRankSum=2.218;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:519,56:0.10:575
chr7	142032115	rs10567930	CTG	C	1139.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr7	142032610	.	A	G	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=342;ExcessHet=3.0103;FS=18.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.626;SOR=1.871;set=HC	GT:AD:AF:DP	0/1:293,48:0.14:341
chr7	142032613	.	TG	CA	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=18.722;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.365;SOR=1.901;set=HC	GT:AD:AF:DP	0/1:279,48:0.15:327
chr7	142032646	rs78118526	G	A	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.75;SOR=1.810;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr7	142032646	.	GTGTACATAGTGCAA	ATGTACATAGTGCAA,ATGTACATGGTGAAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=23;MMLQ=26;MQ=60.0;NF=79,18;NR=141,20;PP=2962,1561;QD=20;SC=TTAAAAATGTGTGTACATAGT;SbPval=0.53;Source=Platypus;TC=221;TCF=79;TCR=142;TR=220,38;WE=142032668;WS=142032636;set=Platypus	GT:AF:DP	0/1:1.00:221
chr7	142032654	rs190649630	A	G	802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=2.187;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:165,31:0.16:196
chr7	142032658	.	C	A	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.206;SOR=1.013;set=HC	GT:AD:AF:DP	0/1:158,34:0.18:192
chr7	142032660	.	A	G	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=1.386;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:151,33:0.18:184
chr7	142032677	rs375896144	G	A	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.383;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:103,32:0.24:135
chr7	142032713	rs371809716	A	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr7	142032729	.	A	G	422.77	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr7	142045848	rs17225	T	C	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr7	142045924	rs1811089	A	G	5725.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr7	142099425	.	A	G	2830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-8.836;QD=9.07;ReadPosRankSum=3.668;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:217,95:0.30:312
chr7	142099438	.	A	G	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=4.767;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-9.259;QD=2.41;ReadPosRankSum=4.197;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:271,83:0.23:354
chr7	142099484	.	G	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;ClippingRankSum=0.000;DP=742;ExcessHet=3.0103;FS=6.069;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-13.838;QD=1.03;ReadPosRankSum=0.961;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:540,112:0.17:652
chr7	142099533	.	T	C	3604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543;ClippingRankSum=0.000;DP=1046;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-25.931;QD=3.48;ReadPosRankSum=3.490;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:881,154:0.15:1035
chr7	142099537	.	G	T	3453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951;ClippingRankSum=0.000;DP=1061;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-26.541;QD=3.28;ReadPosRankSum=2.536;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:904,149:0.14:1053
chr7	142099541	.	T	C	3318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DP=1086;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-27.125;QD=3.07;ReadPosRankSum=1.326;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:934,147:0.14:1081
chr7	142099548	.	A	G	2916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239;ClippingRankSum=0.000;DP=1107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-27.967;QD=2.65;ReadPosRankSum=-0.938;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:964,138:0.13:1102
chr7	142119831	rs361390	G	A	4998.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:145,218:0.60:363
chr7	142119890	.	TG	AA	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.890;ClippingRankSum=0.000;DP=750;ExcessHet=3.0103;FS=4.538;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-27.062;QD=0.20;ReadPosRankSum=-1.956;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:703,47:0.06:750
chr7	142119899	.	C	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783;ClippingRankSum=0.000;DP=811;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-27.717;QD=0.19;ReadPosRankSum=-2.463;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:744,66:0.08:810
chr7	142119928	rs361387	G	A	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.155;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-27.830;QD=0.69;ReadPosRankSum=1.679;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:788,72:0.08:860
chr7	142119935	.	C	T	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;ClippingRankSum=0.000;DP=856;ExcessHet=3.0103;FS=0.994;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-27.729;QD=0.63;ReadPosRankSum=0.996;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:784,71:0.08:855
chr7	142119942	.	G	T	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840;ClippingRankSum=0.000;DP=837;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-27.791;QD=0.71;ReadPosRankSum=-0.176;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:766,70:0.08:836
chr7	142119946	.	G	A	550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.452;ClippingRankSum=0.000;DP=826;ExcessHet=3.0103;FS=2.136;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-28.001;QD=0.67;ReadPosRankSum=-1.043;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:756,69:0.08:825
chr7	142119959	.	AA	TC	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DP=775;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-27.279;QD=0.63;ReadPosRankSum=-4.028;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:715,59:0.08:774
chr7	142119962	.	T	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DP=771;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-27.143;QD=0.31;ReadPosRankSum=-4.480;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:713,57:0.07:770
chr7	142120168	rs57417024	T	TCA	2351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.033;QD=10.84;ReadPosRankSum=-0.646;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:111,106:0.49:217
chr7	142124170	rs361452	C	T	12200.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr7	142124424	rs361449	T	G	11594.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:20,467:0.96:487
chr7	142124492	rs199752543	C	T	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-23.059;QD=0.62;ReadPosRankSum=3.037;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:531,48:0.08:579
chr7	142124496	rs72463875	A	AG	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=4.910;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-21.967;QD=0.77;ReadPosRankSum=3.092;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:513,49:0.09:562
chr7	142124539	rs76007943	C	T	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.976;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-19.010;QD=0.77;ReadPosRankSum=-0.508;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:380,67:0.15:447
chr7	142124610	.	A	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=3.535;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-12.565;QD=2.70;ReadPosRankSum=1.998;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:139,21:0.13:160
chr7	142124612	.	A	G	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-12.363;QD=2.79;ReadPosRankSum=1.561;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:134,21:0.14:155
chr7	142124616	.	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.878;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-12.037;QD=2.88;ReadPosRankSum=1.454;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:127,20:0.14:147
chr7	142124624	.	G	C	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-11.082;QD=3.87;ReadPosRankSum=0.498;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:106,19:0.15:125
chr7	142124626	.	A	T	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-10.857;QD=3.76;ReadPosRankSum=0.590;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:102,18:0.15:120
chr7	142124629	.	C	T	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.200;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-10.580;QD=3.27;ReadPosRankSum=0.617;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:97,17:0.15:114
chr7	142131709	.	T	C	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.851;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=28.086;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-16.399;QD=0.49;ReadPosRankSum=-2.807;SOR=4.089;set=HC	GT:AD:AF:DP	0/1:387,24:0.06:411
chr7	142131710	.	G	A	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.542;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=20.124;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-15.925;QD=0.46;ReadPosRankSum=-3.000;SOR=3.608;set=HC	GT:AD:AF:DP	0/1:396,26:0.06:422
chr7	142131734	.	A	T	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DP=502;ExcessHet=3.0103;FS=7.139;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-12.862;QD=2.58;ReadPosRankSum=-3.355;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:439,63:0.13:502
chr7	142131738	.	G	GA	1502.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.219;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=7.170;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-11.560;QD=2.93;ReadPosRankSum=-2.532;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:447,66:0.13:513
chr7	142131746	.	TG	CA	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;ClippingRankSum=0.000;DP=542;ExcessHet=3.0103;FS=7.884;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-12.172;QD=3.72;ReadPosRankSum=-1.817;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:461,81:0.15:542
chr7	142131779	rs370810757	A	T	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.742;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-12.687;QD=2.37;ReadPosRankSum=2.429;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:456,126:0.22:582
chr7	142131832	rs371240412	C	T	3354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-10.385;QD=7.68;ReadPosRankSum=0.588;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:332,105:0.24:437
chr7	142131836	rs375356148	C	G	3363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.611;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-10.204;QD=7.99;ReadPosRankSum=-0.510;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:317,104:0.25:421
chr7	142131858	rs367836940	C	A	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-8.556;QD=7.53;ReadPosRankSum=-2.492;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:254,78:0.23:332
chr7	142131868	rs374575972	C	T	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.154;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-10.193;QD=6.27;ReadPosRankSum=-1.990;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:218,56:0.20:274
chr7	142131872	rs368030585	G	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.029;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-10.530;QD=6.03;ReadPosRankSum=-2.675;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:192,49:0.20:241
chr7	142131885	.	A	T	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DP=191;ExcessHet=3.0103;FS=7.962;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-11.156;QD=4.92;ReadPosRankSum=-2.509;SOR=1.464;set=HC	GT:AD:AF:DP	0/1:159,32:0.17:191
chr7	142131889	.	A	C	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.413;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=10.003;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-11.971;QD=4.47;ReadPosRankSum=-3.077;SOR=1.618;set=HC	GT:AD:AF:DP	0/1:150,30:0.17:180
chr7	142131894	.	AA	CG	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.033;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=10.373;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-12.444;QD=4.07;ReadPosRankSum=-2.421;SOR=1.909;set=HC	GT:AD:AF:DP	0/1:135,22:0.14:157
chr7	142131904	.	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.916;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-11.008;QD=2.10;ReadPosRankSum=-1.446;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:119,14:0.11:133
chr7	142131922	.	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.717;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-7.992;QD=0.34;ReadPosRankSum=-0.074;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:86,7:0.08:93
chr7	142131990	.	C	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-3.930;QD=1.34;ReadPosRankSum=1.145;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:31,4:0.11:35
chr7	142131991	.	A	G	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.656;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-3.866;QD=1.38;ReadPosRankSum=1.000;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:30,4:0.12:34
chr7	142131999	.	T	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-3.526;QD=2.03;ReadPosRankSum=0.531;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:25,4:0.14:29
chr7	142132011	.	TGC	GGA	920	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=1;MGOF=54;MMLQ=29;MQ=55.49;NF=1;NR=8;PP=920;QD=108.163097207;SC=GTCCTCCCCATGCAGCCTTCC;SbPval=0.48;Source=Platypus;TC=28;TCF=2;TCR=26;TR=9;WE=142132021;WS=142131980;set=Platypus	GT:AD:AF:DP	0/1:19,9:0.32:28
chr7	142139259	rs361374	G	A	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:13,233:0.95:246
chr7	142139271	rs146977487	TG	CA	12112.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;JOINED;set=Intersection	GT:AD:AF:DP	1/1:17,288:0.94:305
chr7	142139348	rs73742284	C	T	15264.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:5,576:0.99:581
chr7	142143639	rs377139967	T	G	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.332;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=7.523;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.540;QD=2.04;ReadPosRankSum=2.235;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:189,27:0.12:216
chr7	142143646	rs369634458	G	A	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=9.851;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-9.707;QD=1.40;ReadPosRankSum=3.366;SOR=0.206;set=HC	GT:AD:AF:DP	0/1:218,24:0.10:242
chr7	142143804	rs73742281	A	C	16142.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:2,591:1.00:593
chr7	142143879	rs376540425	A	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.453;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=18.301;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-16.375;QD=0.46;ReadPosRankSum=-4.770;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:340,50:0.13:390
chr7	142143906	.	GT	CC	2929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DP=452;ExcessHet=3.0103;FS=9.157;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-15.450;QD=6.51;ReadPosRankSum=-1.083;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:354,96:0.21:450
chr7	142143941	rs368607254	T	C	6483.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:418,183:0.30:601
chr7	142143953	rs371156869	G	A	5266.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:437,206:0.32:643
chr7	142143993	rs374220425	C	A	7891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.046;ClippingRankSum=0.000;DB;DP=717;ExcessHet=3.0103;FS=3.361;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-16.426;QD=11.07;ReadPosRankSum=-1.380;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:448,265:0.37:713
chr7	142144004	rs368631399	T	A	7902.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:460,263:0.36:723
chr7	142144022	rs371600923	T	C	7435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-14.718;QD=10.40;ReadPosRankSum=0.919;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:456,259:0.36:715
chr7	142144059	.	A	C	3572.77	.	AC=1;AF=0.500;AN=2;DP=536;set=Intersection	GT:AD:AF:DP	0/1:339,195:0.37:534
chr7	142144091	.	GG	AA	4153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.031;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-10.948;QD=12.86;ReadPosRankSum=1.358;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:208,115:0.36:323
chr7	142144101	.	C	T	3807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=56.27;MQRankSum=-10.796;QD=13.00;ReadPosRankSum=1.195;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:189,104:0.35:293
chr7	142144111	.	T	C	3274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-11.706;QD=13.76;ReadPosRankSum=0.610;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:152,86:0.36:238
chr7	142144129	.	A	G	2172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.657;ClippingRankSum=0.000;DP=163;ExcessHet=3.0103;FS=0.651;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-11.273;QD=13.33;ReadPosRankSum=-2.852;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:99,64:0.39:163
chr7	142144135	.	G	A	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.616;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-10.842;QD=12.92;ReadPosRankSum=-1.753;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:98,54:0.36:152
chr7	142144142	.	T	A	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=15.276;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=-10.241;QD=12.61;ReadPosRankSum=-0.360;SOR=2.168;set=HC	GT:AD:AF:DP	0/1:93,42:0.31:135
chr7	142148850	.	G	A	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.339;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-12.253;QD=8.77;ReadPosRankSum=0.659;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:114,42:0.27:156
chr7	142148878	rs370978147	T	C	2623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=10.507;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-15.900;QD=9.79;ReadPosRankSum=0.151;SOR=0.318;set=HC	GT:AD:AF:DP	0/1:191,77:0.29:268
chr7	142148881	rs374566766	C	A	2614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.488;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=11.514;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-16.238;QD=9.37;ReadPosRankSum=0.575;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:200,79:0.28:279
chr7	142148919	rs376682174	C	T	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.986;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=6.203;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-21.088;QD=2.73;ReadPosRankSum=4.478;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:416,128:0.24:544
chr7	142148963	rs371195527	C	T	2775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=4.826;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-22.961;QD=3.79;ReadPosRankSum=2.326;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:618,114:0.16:732
chr7	142148969	.	AA	TC	2687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DP=749;ExcessHet=3.0103;FS=4.974;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-23.082;QD=3.59;ReadPosRankSum=0.221;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:639,109:0.15:748
chr7	142149001	rs367985593	G	A	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DB;DP=746;ExcessHet=3.0103;FS=5.081;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-22.137;QD=0.28;ReadPosRankSum=-6.681;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:676,68:0.09:744
chr7	142149160	rs17217	T	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:7,270:0.97:277
chr7	142149349	rs140504979	A	C	5440.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr7	142162001	rs73742263	A	C	18930.77	.	AC=2;AF=1.00;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	1/1:1,709:1.00:710
chr7	142162148	rs71877	C	T	12386.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr7	142162278	rs361443	C	T	12470.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:6,474:0.99:480
chr7	142162306	rs361442	A	G	10114.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:6,391:0.98:397
chr7	142168348	.	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.473;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=51.071;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-13.368;QD=4.89;ReadPosRankSum=-1.752;SOR=5.729;set=HC	GT:AD:AF:DP	0/1:148,33:0.18:181
chr7	142168351	.	T	C	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.122;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=53.594;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-13.945;QD=5.53;ReadPosRankSum=-1.182;SOR=5.856;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr7	142168362	.	A	T	1849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.476;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=37.575;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-14.636;QD=7.17;ReadPosRankSum=-2.213;SOR=2.795;set=HC	GT:AD:AF:DP	0/1:203,55:0.21:258
chr7	142168365	.	C	T	2243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.535;ClippingRankSum=0.000;DP=283;ExcessHet=3.0103;FS=33.287;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-14.923;QD=7.96;ReadPosRankSum=-2.125;SOR=2.399;set=HC	GT:AD:AF:DP	0/1:220,62:0.22:282
chr7	142168371	.	C	T	2718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.658;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=10.604;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-14.319;QD=7.70;ReadPosRankSum=-4.261;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:254,99:0.28:353
chr7	142168414	rs374005717	G	C	5245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;ClippingRankSum=0.000;DB;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-14.473;QD=7.74;ReadPosRankSum=-2.546;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:402,276:0.41:678
chr7	142168429	rs55634899	A	G	32918.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr7	142168452	rs361355	C	A	34600.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,788:1.00:788
chr7	142168466	.	A	C	12095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.749;ClippingRankSum=0.000;DP=777;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-14.052;QD=15.59;ReadPosRankSum=1.416;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:448,328:0.42:776
chr7	142168474	rs377511417	G	A	12020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-13.300;QD=15.94;ReadPosRankSum=1.148;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:440,314:0.42:754
chr7	142168498	.	GCCA	G	10034.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DP=632;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-11.101;QD=15.90;ReadPosRankSum=-4.961;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:372,259:0.41:631
chr7	142168502	.	T	TTTC	5642.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=16.620;ClippingRankSum=0.000;DP=510;ExcessHet=3.0103;FS=65.999;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-11.274;QD=11.09;ReadPosRankSum=3.432;SOR=3.866;set=HC	GT:AD:AF:DP	0/1:348,161:0.32:509
chr7	142168508	.	TC	T	5276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.534;ClippingRankSum=0.000;DP=465;ExcessHet=3.0103;FS=71.100;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-11.190;QD=11.37;ReadPosRankSum=0.905;SOR=3.902;set=HC	GT:AD:AF:DP	0/1:319,145:0.31:464
chr7	142168511	.	T	A	4973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.372;ClippingRankSum=0.000;DP=455;ExcessHet=3.0103;FS=63.435;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-11.254;QD=10.96;ReadPosRankSum=1.256;SOR=3.812;set=HC	GT:AD:AF:DP	0/1:313,141:0.31:454
chr7	142168515	.	T	TC	4676.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.728;ClippingRankSum=0.000;DP=437;ExcessHet=3.0103;FS=60.435;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-11.363;QD=10.73;ReadPosRankSum=0.890;SOR=3.649;set=HC	GT:AD:AF:DP	0/1:304,132:0.30:436
chr7	142168516	.	A	G	4640.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=12.284;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=57.327;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-11.084;QD=11.02;ReadPosRankSum=0.274;SOR=3.493;set=HC	GT:AD:AF:DP	0/1:297,124:0.29:421
chr7	142168518	.	A	C	4260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.787;ClippingRankSum=0.000;DP=416;ExcessHet=3.0103;FS=54.735;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-10.694;QD=10.27;ReadPosRankSum=-0.077;SOR=3.449;set=HC	GT:AD:AF:DP	0/1:294,121:0.29:415
chr7	142168523	.	T	C	3795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.066;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=101.212;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-10.103;QD=9.94;ReadPosRankSum=-0.924;SOR=3.588;set=HC	GT:AD:AF:DP	0/1:274,108:0.28:382
chr7	142168524	.	G	A	3777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.631;ClippingRankSum=0.000;DP=385;ExcessHet=3.0103;FS=100.870;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-10.139;QD=9.84;ReadPosRankSum=-1.066;SOR=3.562;set=HC	GT:AD:AF:DP	0/1:276,108:0.28:384
chr7	142168527	.	A	G	3642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.740;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=92.705;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-9.766;QD=9.51;ReadPosRankSum=-1.305;SOR=3.441;set=HC	GT:AD:AF:DP	0/1:279,104:0.27:383
chr7	142168530	.	T	G	3402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.539;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=86.240;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-9.693;QD=9.20;ReadPosRankSum=-1.516;SOR=3.366;set=HC	GT:AD:AF:DP	0/1:273,97:0.26:370
chr7	142168531	.	A	G	3240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.826;ClippingRankSum=0.000;DP=367;ExcessHet=3.0103;FS=84.249;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-9.489;QD=8.85;ReadPosRankSum=-1.450;SOR=3.338;set=HC	GT:AD:AF:DP	0/1:272,94:0.26:366
chr7	142168538	.	G	A	2748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.910;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=77.099;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-9.273;QD=8.01;ReadPosRankSum=-3.131;SOR=3.290;set=HC	GT:AD:AF:DP	0/1:259,84:0.24:343
chr7	142168540	.	C	G	2712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.001;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=72.284;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-9.345;QD=8.12;ReadPosRankSum=-3.665;SOR=3.204;set=HC	GT:AD:AF:DP	0/1:253,81:0.24:334
chr7	142168544	.	T	A	2407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.010;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=71.404;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-8.923;QD=7.69;ReadPosRankSum=-3.567;SOR=3.453;set=HC	GT:AD:AF:DP	0/1:244,69:0.22:313
chr7	142168662	rs73742240	CG	TC	7900.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;JOINED;set=Intersection	GT:AD:AF:DP	1/1:3,192:0.98:195
chr7	142168819	rs361350	G	A	3442.74	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:10,142:0.93:152
chr7	142168835	.	CA	TG	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.315;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.52;MQRankSum=-3.373;QD=0.40;ReadPosRankSum=3.111;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:113,10:0.08:123
chr7	142168839	.	G	T	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=55.36;MQRankSum=-3.256;QD=0.44;ReadPosRankSum=3.002;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:109,10:0.08:119
chr7	142168856	rs73742239	C	G	2168.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:10,82:0.89:92
chr7	142176378	rs361393	A	G	16470.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:1,645:1.00:646
chr7	142176404	rs55996663	C	T	4370.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:480,243:0.34:723
chr7	142180618	.	TG	CA	2341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.931;ClippingRankSum=0.000;DP=1179;ExcessHet=3.0103;FS=6.179;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-26.679;QD=1.99;ReadPosRankSum=-5.617;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:1050,128:0.11:1178
chr7	142180625	.	T	C	2515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.851;ClippingRankSum=0.000;DP=1175;ExcessHet=3.0103;FS=5.845;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-25.566;QD=2.14;ReadPosRankSum=-3.726;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:1038,136:0.12:1174
chr7	142180633	.	G	T	3343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.031;ClippingRankSum=0.000;DP=1156;ExcessHet=3.0103;FS=7.022;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-23.817;QD=2.90;ReadPosRankSum=-2.472;SOR=1.437;set=HC	GT:AD:AF:DP	0/1:1006,148:0.13:1154
chr7	142180635	.	T	G	3451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.237;ClippingRankSum=0.000;DP=1147;ExcessHet=3.0103;FS=8.530;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-23.316;QD=3.01;ReadPosRankSum=-2.575;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:991,154:0.13:1145
chr7	142180640	.	GA	TG	3865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.370;ClippingRankSum=0.000;DP=1127;ExcessHet=3.0103;FS=10.166;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-22.307;QD=3.44;ReadPosRankSum=-1.329;SOR=1.408;set=HC	GT:AD:AF:DP	0/1:967,158:0.14:1125
chr7	142180646	.	AG	CT	3986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.985;ClippingRankSum=0.000;DP=1096;ExcessHet=3.0103;FS=9.719;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-21.111;QD=3.64;ReadPosRankSum=0.377;SOR=1.394;set=HC	GT:AD:AF:DP	0/1:931,163:0.15:1094
chr7	142180704	rs368420989	G	T	4242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.972;ClippingRankSum=0.000;DB;DP=836;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-15.576;QD=5.08;ReadPosRankSum=3.275;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:584,251:0.30:835
chr7	142180737	rs372013265	T	A	3934.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:464,217:0.32:681
chr7	142180770	rs375278683	T	C	2626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780;ClippingRankSum=0.000;DB;DP=607;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=57.51;MQRankSum=-16.421;QD=4.35;ReadPosRankSum=1.128;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:437,167:0.28:604
chr7	142180818	rs377067235	AAGG	A	2034.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=641;ExcessHet=3.0103;FS=5.136;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-22.279;QD=3.22;ReadPosRankSum=2.539;SOR=1.323;set=HC	GT:AD:AF:DP	0/1:539,93:0.15:632
chr7	142180849	.	T	C	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DP=630;ExcessHet=3.0103;FS=4.063;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-24.935;QD=2.71;ReadPosRankSum=0.377;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:543,84:0.13:627
chr7	142180856	rs373727238	GC	G	1572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.525;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=2.898;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-24.908;QD=2.52;ReadPosRankSum=0.205;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:547,78:0.12:625
chr7	142180873	.	T	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.264;ClippingRankSum=0.000;DP=587;ExcessHet=3.0103;FS=10.216;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-24.117;QD=1.53;ReadPosRankSum=-0.338;SOR=1.792;set=HC	GT:AD:AF:DP	0/1:523,62:0.11:585
chr7	142180876	.	C	T	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.000;DP=581;ExcessHet=3.0103;FS=13.044;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-24.000;QD=1.44;ReadPosRankSum=-0.101;SOR=2.046;set=HC	GT:AD:AF:DP	0/1:522,57:0.10:579
chr7	142180877	.	A	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.742;ClippingRankSum=0.000;DP=574;ExcessHet=3.0103;FS=11.025;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-23.855;QD=1.38;ReadPosRankSum=-0.294;SOR=1.977;set=HC	GT:AD:AF:DP	0/1:516,56:0.10:572
chr7	142180886	.	T	C	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.784;ClippingRankSum=0.000;DP=558;ExcessHet=3.0103;FS=10.169;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-23.533;QD=0.78;ReadPosRankSum=0.109;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:512,44:0.08:556
chr7	142197606	rs373222208	T	C	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=16.845;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-3.962;QD=13.37;ReadPosRankSum=2.074;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:84,51:0.38:135
chr7	142197613	rs376535639	T	C	1749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=19.289;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-4.087;QD=13.26;ReadPosRankSum=0.462;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:84,48:0.36:132
chr7	142197770	.	A	ATT	217.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DP=271;ExcessHet=3.0103;FS=10.409;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-9.745;QD=0.81;ReadPosRankSum=-1.679;SOR=1.643;set=HC	GT:AD:AF:DP	0/1:246,24:0.09:270
chr7	142197771	.	GCA	G	276.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=10.467;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-9.841;QD=1.01;ReadPosRankSum=-0.788;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:251,24:0.09:275
chr7	142197782	rs377242129	T	A	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=8.097;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-9.149;QD=1.12;ReadPosRankSum=-0.186;SOR=1.478;set=HC	GT:AD:AF:DP	0/1:244,27:0.10:271
chr7	142197807	rs369644106	CT	GG	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=6.376;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-8.930;QD=1.65;ReadPosRankSum=2.530;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:241,28:0.10:269
chr7	142197812	.	CC	TT	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.902;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=6.375;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-8.711;QD=1.69;ReadPosRankSum=2.373;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:229,28:0.11:257
chr7	142197835	rs17280	C	T	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr7	142197845	rs372935433	GG	AA	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=5.506;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-8.836;QD=1.15;ReadPosRankSum=0.249;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:228,24:0.10:252
chr7	142197848	rs368955078	A	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.258;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=5.508;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-8.798;QD=1.16;ReadPosRankSum=-0.609;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:226,24:0.10:250
chr7	142197861	rs373311950	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=7.393;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-9.190;QD=0.66;ReadPosRankSum=-3.156;SOR=1.472;set=HC	GT:AD:AF:DP	0/1:226,22:0.09:248
chr7	142197871	.	A	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.511;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-9.905;QD=0.20;ReadPosRankSum=-1.842;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:232,12:0.05:244
chr7	142197897	rs17279	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:152,97:0.39:249
chr7	142197986	rs148941368	T	C	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr7	142206473	rs11764626	G	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr7	142206764	.	T	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.725;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=8.119;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-10.608;QD=0.27;ReadPosRankSum=1.435;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:105,9:0.08:114
chr7	142206770	.	A	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.147;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=8.198;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-10.321;QD=0.31;ReadPosRankSum=0.823;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:99,9:0.08:108
chr7	142211193	rs6977669	C	T	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:38,65:0.63:103
chr7	142231625	rs17249	C	A	3532.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:111,164:0.60:275
chr7	142231694	.	T	C	4206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DP=450;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-7.934;QD=9.41;ReadPosRankSum=-0.838;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:323,124:0.28:447
chr7	142231698	.	G	A	4249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=456;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-7.450;QD=9.36;ReadPosRankSum=-0.095;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:330,124:0.27:454
chr7	142231701	rs17248	G	T	7300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.388;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-4.419;QD=15.84;ReadPosRankSum=1.896;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:223,238:0.52:461
chr7	142231703	.	G	T	4234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.202;ClippingRankSum=0.000;DP=456;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-7.192;QD=9.33;ReadPosRankSum=0.094;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:329,125:0.28:454
chr7	142231740	rs372096379	T	C	3138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.036;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-4.963;QD=7.40;ReadPosRankSum=1.935;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:309,115:0.27:424
chr7	142231744	rs376782927	A	G	3153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-4.923;QD=7.53;ReadPosRankSum=1.202;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:304,115:0.27:419
chr7	142231762	.	A	T	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DP=341;ExcessHet=3.0103;FS=20.062;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-5.087;QD=6.30;ReadPosRankSum=2.234;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:258,71:0.22:329
chr7	142231769	.	T	A	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.918;ClippingRankSum=0.000;DP=300;ExcessHet=3.0103;FS=30.563;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-5.159;QD=6.72;ReadPosRankSum=1.658;SOR=2.143;set=HC	GT:AD:AF:DP	0/1:235,63:0.21:298
chr7	142231771	.	TT	CG	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.346;ClippingRankSum=0.000;DP=290;ExcessHet=3.0103;FS=25.217;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-5.154;QD=6.60;ReadPosRankSum=1.340;SOR=2.029;set=HC	GT:AD:AF:DP	0/1:227,61:0.21:288
chr7	142231780	.	CA	TC	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=20.515;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.130;QD=6.56;ReadPosRankSum=-0.104;SOR=1.852;set=HC	GT:AD:AF:DP	0/1:206,56:0.21:262
chr7	142231788	.	G	A	739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DP=251;ExcessHet=3.0103;FS=7.226;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-5.611;QD=2.97;ReadPosRankSum=-0.031;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:215,34:0.14:249
chr7	142231793	.	A	AT	1346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.363;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=10.073;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-5.453;QD=5.57;ReadPosRankSum=-1.452;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:195,47:0.19:242
chr7	142231795	.	G	T	1352.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.322;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=10.098;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-5.398;QD=5.68;ReadPosRankSum=-2.272;SOR=1.431;set=HC	GT:AD:AF:DP	0/1:191,47:0.20:238
chr7	142231796	.	CCA	C	1334.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.216;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=8.830;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-5.503;QD=5.68;ReadPosRankSum=-2.094;SOR=1.354;set=HC	GT:AD:AF:DP	0/1:190,45:0.19:235
chr7	142231800	.	G	GA	1280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.589;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=8.853;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-5.488;QD=5.47;ReadPosRankSum=-2.163;SOR=1.368;set=HC	GT:AD:AF:DP	0/1:189,45:0.19:234
chr7	142231805	.	C	CTG	1298.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.856;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=10.859;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-5.487;QD=5.96;ReadPosRankSum=-3.446;SOR=1.495;set=HC	GT:AD:AF:DP	0/1:176,42:0.19:218
chr7	142231806	.	C	G	1187.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=17.301;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.679;QD=5.55;ReadPosRankSum=-3.633;SOR=1.941;set=HC	GT:AD:AF:DP	0/1:175,39:0.18:214
chr7	142231808	.	GCC	G	1058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=20.929;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-5.846;QD=5.11;ReadPosRankSum=-3.616;SOR=2.265;set=HC	GT:AD:AF:DP	0/1:171,36:0.17:207
chr7	142231826	.	T	C	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=3.373;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-5.623;QD=0.74;ReadPosRankSum=-3.158;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:148,19:0.11:167
chr7	142232163	rs144354683	T	C	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr7	142242670	rs17219	T	G	13042.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr7	142247134	rs361363	T	C	8339.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr7	142247263	.	G	A	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.399;ClippingRankSum=0.000;DP=539;ExcessHet=3.0103;FS=4.241;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-11.168;QD=2.76;ReadPosRankSum=-5.451;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:470,66:0.12:536
chr7	142247270	rs375846702	TG	CA	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.869;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=2.764;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-10.849;QD=3.14;ReadPosRankSum=-3.880;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:469,74:0.14:543
chr7	142247288	.	T	C	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=4.419;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-8.891;QD=2.98;ReadPosRankSum=-0.958;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:434,102:0.19:536
chr7	142247347	rs361359	AT	CC	4805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=5.664;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-6.979;QD=9.75;ReadPosRankSum=3.603;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:351,142:0.29:493
chr7	142247380	rs374995027	T	A	2669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.638;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=14.296;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-5.756;QD=5.78;ReadPosRankSum=1.716;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:362,100:0.22:462
chr7	142247396	.	A	T	2103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.980;ClippingRankSum=0.000;DP=457;ExcessHet=3.0103;FS=12.309;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.954;QD=4.65;ReadPosRankSum=1.196;SOR=1.736;set=HC	GT:AD:AF:DP	0/1:375,77:0.17:452
chr7	142247410	rs56172210	C	T	1463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.369;ClippingRankSum=0.000;DB;DP=449;ExcessHet=3.0103;FS=10.206;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.478;QD=3.29;ReadPosRankSum=-1.405;SOR=1.628;set=HC	GT:AD:AF:DP	0/1:381,64:0.14:445
chr7	142247417	rs370449003	AC	A	1376.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.268;ClippingRankSum=0.000;DB;DP=453;ExcessHet=3.0103;FS=10.329;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-5.058;QD=3.07;ReadPosRankSum=-3.294;SOR=1.676;set=HC	GT:AD:AF:DP	0/1:388,61:0.14:449
chr7	142247425	.	A	G	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.500;ClippingRankSum=0.000;DP=442;ExcessHet=3.0103;FS=13.525;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-5.405;QD=2.55;ReadPosRankSum=-4.237;SOR=1.929;set=HC	GT:AD:AF:DP	0/1:385,53:0.12:438
chr7	142247432	.	G	A	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.037;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=12.725;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-6.610;QD=1.60;ReadPosRankSum=-4.845;SOR=1.871;set=HC	GT:AD:AF:DP	0/1:390,45:0.10:435
chr7	142247443	.	C	T	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.752;ClippingRankSum=0.000;DP=441;ExcessHet=3.0103;FS=12.344;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-9.791;QD=0.23;ReadPosRankSum=-2.994;SOR=2.663;set=HC	GT:AD:AF:DP	0/1:411,26:0.06:437
chr7	142247474	rs372827613	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=5.171;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-14.997;QD=0.90;ReadPosRankSum=-4.059;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:387,36:0.09:423
chr7	142247478	rs368525308	G	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.475;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=4.834;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-14.414;QD=0.99;ReadPosRankSum=-3.515;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:377,38:0.09:415
chr7	142247486	.	G	C	520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DP=404;ExcessHet=3.0103;FS=15.132;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-13.002;QD=1.30;ReadPosRankSum=-1.841;SOR=1.388;set=HC	GT:AD:AF:DP	0/1:360,40:0.10:400
chr7	142247494	.	C	A	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=387;ExcessHet=3.0103;FS=14.375;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-12.024;QD=1.77;ReadPosRankSum=-0.722;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:338,44:0.12:382
chr7	142247517	rs361380	C	A	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=13.351;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-11.409;QD=2.07;ReadPosRankSum=2.943;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:293,42:0.13:335
chr7	142247529	.	GGC	G	1009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DP=320;ExcessHet=3.0103;FS=16.191;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-9.847;QD=3.21;ReadPosRankSum=3.146;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:270,45:0.14:315
chr7	142247535	.	G	GAA	1168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=17.989;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-9.343;QD=3.90;ReadPosRankSum=2.751;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:253,47:0.16:300
chr7	142247538	.	CTG	C	148.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.193;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-4.753;QD=0.50;ReadPosRankSum=-3.918;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:273,22:0.07:295
chr7	142247539	.	T	C	1309.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=23.580;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-9.037;QD=4.53;ReadPosRankSum=2.195;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:241,48:0.17:289
chr7	142247540	.	G	A	1318.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=23.808;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-8.975;QD=4.61;ReadPosRankSum=2.140;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:238,48:0.17:286
chr7	142247541	.	C	CAT	187.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-4.374;QD=0.65;ReadPosRankSum=-4.013;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:264,23:0.08:287
chr7	142247546	.	C	A	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=16.993;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-8.959;QD=4.70;ReadPosRankSum=1.318;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:236,51:0.18:287
chr7	142247554	rs10265119	C	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-4.924;QD=0.95;ReadPosRankSum=-0.344;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:262,26:0.09:288
chr7	142247567	rs372792593	A	G	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=14.977;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-9.836;QD=10.82;ReadPosRankSum=1.656;SOR=0.369;set=HC	GT:AD:AF:DP	0/1:187,82:0.30:269
chr7	142247571	rs376050671	A	G	2911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=12.079;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-9.862;QD=10.74;ReadPosRankSum=2.265;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:187,84:0.31:271
chr7	142247605	rs370122363	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:151,47:0.24:198
chr7	142250938	rs361439	T	G	7060.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr7	142250988	rs361437	G	A	8602.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr7	142251132	rs361436	G	T	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	142326607	rs17260	C	T	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr7	142326783	rs17262	A	G	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:202,121:0.37:323
chr7	142326909	rs76454382	C	G	6875.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr7	142334648	rs17210	A	T	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,62:0.60:103
chr7	142334744	rs17211	C	A	3136.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:303,174:0.36:477
chr7	142353577	.	C	CTTTGTTTTGT	2360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.563;QD=13.26;ReadPosRankSum=-0.394;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:115,63:0.35:178
chr7	142378633	rs17243	G	A	5150.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr7	142378831	rs76429157	C	G	17887.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr7	142423161	rs112325538	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr7	142423562	rs62001054	C	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	142428611	rs361326	C	T	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr7	142428626	rs361327	A	C	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	142428829	.	G	A	859.77	.	AC=1;AF=0.500;AN=2;DP=139;set=Intersection	GT:AD:AF:DP	0/1:93,46:0.33:139
chr7	142429001	rs17213	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	142448199	rs112413030	GGGTGGAAA	G	1709.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr7	142458304	.	T	A	2301	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=4;MGOF=45;MMLQ=24;MQ=55.52;NF=41;NR=25;PP=2301;QD=35.3904729174;SC=AGCCTCACTGTGCTTGTTAAG;SbPval=0.49;Source=Platypus;TC=145;TCF=92;TCR=53;TR=66;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:79,66:0.46:145
chr7	142458316	.	A	T	2301	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=4;MGOF=45;MMLQ=25;MQ=55.32;NF=53;NR=31;PP=2301;QD=27.8068001494;SC=CTTGTTAAGGATTTCTAATTA;SbPval=0.49;Source=Platypus;TC=172;TCF=110;TCR=62;TR=84;WE=142458324;WS=142458294;set=Platypus	GT:AD:AF:DP	1/0:88,84:0.49:172
chr7	142458371	rs367779270	T	C	2667.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:179,144:0.45:323
chr7	142458409	rs200665515	C	G	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-3.702;QD=0.10;ReadPosRankSum=-0.396;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:388,29:0.07:417
chr7	142458412	rs202003805	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-3.983;QD=0.16;ReadPosRankSum=0.175;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:387,30:0.07:417
chr7	142458414	.	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DP=422;ExcessHet=3.0103;FS=2.359;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-4.309;QD=0.25;ReadPosRankSum=0.322;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:388,31:0.07:419
chr7	142458437	rs372637371	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-5.182;QD=1.51;ReadPosRankSum=0.718;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:352,50:0.12:402
chr7	142458451	rs111033566	A	T	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.268;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=13.708;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-14.390;QD=1.97;ReadPosRankSum=-4.363;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:333,76:0.19:409
chr7	142458511	rs138464021	G	T	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=448;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-14.947;QD=2.42;ReadPosRankSum=0.413;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:387,60:0.13:447
chr7	142458523	rs149246646	T	A	932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-16.935;QD=2.13;ReadPosRankSum=-0.295;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:388,49:0.11:437
chr7	142458526	rs144422014	AC	GG	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=431;ExcessHet=3.0103;FS=4.372;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-18.906;QD=2.31;ReadPosRankSum=-0.623;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:383,47:0.11:430
chr7	142458531	rs147366981	C	T	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-18.097;QD=1.39;ReadPosRankSum=-1.009;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:377,42:0.10:419
chr7	142458542	.	A	G	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.660;ClippingRankSum=0.000;DP=403;ExcessHet=3.0103;FS=3.488;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-19.409;QD=1.32;ReadPosRankSum=-3.047;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:364,38:0.09:402
chr7	142458550	rs149455681	GC	CT	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.198;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=6.940;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-18.942;QD=0.74;ReadPosRankSum=-3.846;SOR=1.278;set=HC	GT:AD:AF:DP	0/1:353,33:0.09:386
chr7	142458697	rs373299247	T	A	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=42.993;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-9.158;QD=9.93;ReadPosRankSum=0.213;SOR=3.069;set=HC	GT:AD:AF:DP	0/1:62,26:0.30:88
chr7	142458700	rs376748793	G	T	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=44.348;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-9.038;QD=10.54;ReadPosRankSum=0.464;SOR=3.596;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr7	142458719	rs373298203	G	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-3.971;QD=1.62;ReadPosRankSum=-0.151;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr7	142458737	rs370066365	C	G	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.411;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=7.612;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-6.113;QD=6.72;ReadPosRankSum=-0.259;SOR=1.570;set=HC	GT:AD:AF:DP	0/1:100,25:0.20:125
chr7	142458739	rs374137559	T	C	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=8.789;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-4.861;QD=6.61;ReadPosRankSum=-1.391;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr7	142458768	rs376959792	C	T	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.996;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-5.507;QD=1.08;ReadPosRankSum=2.563;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:150,29:0.16:179
chr7	142458829	rs377669553	A	G	3100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.494;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-9.648;QD=13.14;ReadPosRankSum=-0.033;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:150,86:0.36:236
chr7	142458837	rs370580835	A	T	3065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-9.774;QD=12.67;ReadPosRankSum=0.669;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:157,85:0.35:242
chr7	142458841	rs375181092	AT	A	2939.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:155,80:0.34:235
chr7	142458873	rs373388800	A	C	2166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-8.959;QD=10.73;ReadPosRankSum=-1.228;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:130,72:0.36:202
chr7	142458881	rs376074412	A	T	2168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=6.150;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-9.815;QD=12.54;ReadPosRankSum=1.323;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:121,52:0.30:173
chr7	142458884	rs370405149	C	G	1793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=7.520;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-9.810;QD=10.61;ReadPosRankSum=1.153;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:118,51:0.30:169
chr7	142458886	rs373808731	T	A	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=7.526;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-9.667;QD=10.62;ReadPosRankSum=0.762;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:114,51:0.31:165
chr7	142458887	rs368632869	T	C	1757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=7.526;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-9.667;QD=10.65;ReadPosRankSum=0.681;SOR=1.252;set=HC	GT:AD:AF:DP	0/1:114,51:0.31:165
chr7	142458898	rs371109898	A	T	1598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=6.701;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-9.994;QD=10.31;ReadPosRankSum=1.327;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:110,45:0.29:155
chr7	142458902	.	G	C	1487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.396;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=6.812;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-9.997;QD=9.85;ReadPosRankSum=1.077;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:107,44:0.29:151
chr7	142458906	rs374242167	T	G	1473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.627;MLEAC=1;MLEAF=0.500;MQ=57.47;MQRankSum=-9.393;QD=10.68;ReadPosRankSum=0.739;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:97,41:0.30:138
chr7	142458910	rs368381895	C	T	1332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.523;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-8.965;QD=10.25;ReadPosRankSum=0.886;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:92,38:0.29:130
chr7	142458929	rs371622191	G	C	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-7.402;QD=11.58;ReadPosRankSum=-0.438;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:66,33:0.33:99
chr7	142458938	rs374770738	T	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-6.515;QD=12.16;ReadPosRankSum=-0.568;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:58,30:0.34:88
chr7	142458965	rs111256080	A	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.260;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-4.901;QD=10.28;ReadPosRankSum=0.715;SOR=1.845;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr7	142458967	rs367567937	A	T	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=7.467;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-5.047;QD=10.70;ReadPosRankSum=0.323;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr7	142458972	rs371766102	T	C	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.510;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.285;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-5.018;QD=11.91;ReadPosRankSum=0.340;SOR=1.633;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr7	142458987	rs375094420	C	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr7	142459042	rs369844822	C	T	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr7	142460313	rs6666	T	C	2760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.421;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=6.446;QD=4.20;ReadPosRankSum=-1.046;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:482,176:0.27:658
chr7	142460335	rs201550522	A	G	10772.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:280,341:0.55:621
chr7	142460339	rs200973660	G	A	1732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-3.439;QD=2.78;ReadPosRankSum=3.266;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:486,137:0.22:623
chr7	142460369	rs201719096	G	A	7149.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:309,214:0.41:523
chr7	142460374	rs200070487	A	G	2192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=4.634;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-4.955;QD=4.24;ReadPosRankSum=-0.901;SOR=1.103;set=HC	GT:AD:AF:DP	0/1:430,87:0.17:517
chr7	142460379	.	C	T	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158;ClippingRankSum=0.000;DP=505;ExcessHet=3.0103;FS=2.534;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-5.469;QD=4.12;ReadPosRankSum=-1.924;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:423,80:0.16:503
chr7	142460388	rs1804561	C	T	1739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-6.507;QD=3.51;ReadPosRankSum=-3.684;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:428,68:0.14:496
chr7	142460394	rs377124851	T	C	2144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.609;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=2.537;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-12.372;QD=4.27;ReadPosRankSum=0.497;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:421,81:0.16:502
chr7	142460412	.	A	C	2453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.384;ClippingRankSum=0.000;DP=469;ExcessHet=3.0103;FS=18.395;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-19.466;QD=5.24;ReadPosRankSum=-3.343;SOR=1.984;set=HC	GT:AD:AF:DP	0/1:384,84:0.18:468
chr7	142460415	.	T	C	2288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.613;ClippingRankSum=0.000;DP=471;ExcessHet=3.0103;FS=17.278;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-20.395;QD=4.86;ReadPosRankSum=-2.726;SOR=2.139;set=HC	GT:AD:AF:DP	0/1:396,75:0.16:471
chr7	142460428	rs370303567	CCAA	C	1529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.773;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=26.646;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-22.128;QD=3.10;ReadPosRankSum=-4.991;SOR=3.003;set=HC	GT:AD:AF:DP	0/1:428,65:0.13:493
chr7	142460461	.	C	A	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.276;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=16.237;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-18.839;QD=0.30;ReadPosRankSum=-3.205;SOR=2.459;set=HC	GT:AD:AF:DP	0/1:376,31:0.08:407
chr7	142460463	.	T	C	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.253;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=20.967;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-19.981;QD=0.76;ReadPosRankSum=-4.101;SOR=2.738;set=HC	GT:AD:AF:DP	0/1:366,35:0.09:401
chr7	142460503	.	T	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.079;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=9.361;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-16.319;QD=0.38;ReadPosRankSum=2.070;SOR=1.702;set=HC	GT:AD:AF:DP	0/1:245,23:0.09:268
chr7	142460531	rs374907758	CA	C	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.294;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-13.270;QD=2.28;ReadPosRankSum=2.015;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:156,22:0.12:178
chr7	142460556	rs374121411	C	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-11.359;QD=3.65;ReadPosRankSum=0.205;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:111,20:0.15:131
chr7	142460569	rs377684105	T	C	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=2.347;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-9.617;QD=4.61;ReadPosRankSum=-1.347;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:87,20:0.19:107
chr7	142460603	rs370565903	A	G	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-8.079;QD=2.22;ReadPosRankSum=-1.159;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:57,10:0.15:67
chr7	142460660	.	T	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.991;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-6.914;QD=0.81;ReadPosRankSum=2.058;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:54,6:0.10:60
chr7	142460669	.	C	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.095;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=6.167;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-8.122;QD=2.13;ReadPosRankSum=1.561;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:70,8:0.10:78
chr7	142460671	rs377695327	A	G	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.653;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-7.449;QD=1.97;ReadPosRankSum=0.582;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:74,10:0.12:84
chr7	142460690	.	C	CTCTT	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.426;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=13.644;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-8.734;QD=2.53;ReadPosRankSum=0.590;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:91,13:0.12:104
chr7	142460865	rs6667	T	C	5539.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:161,254:0.61:415
chr7	142468205	.	A	C	3177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-18.269;QD=8.07;ReadPosRankSum=3.365;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:294,100:0.25:394
chr7	142468206	.	G	C	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.777;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-13.696;QD=2.19;ReadPosRankSum=2.690;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:346,48:0.12:394
chr7	142468213	.	A	G	3028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.761;ClippingRankSum=0.000;DP=411;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-18.546;QD=7.44;ReadPosRankSum=3.653;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:314,93:0.23:407
chr7	142468221	.	T	A	653.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065;ClippingRankSum=0.000;DP=453;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-11.308;QD=1.46;ReadPosRankSum=3.572;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:402,47:0.10:449
chr7	142468228	.	A	G	2506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.333;ClippingRankSum=0.000;DP=481;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-20.121;QD=5.24;ReadPosRankSum=1.909;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:388,90:0.19:478
chr7	142468232	.	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=0.000;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-15.079;QD=0.60;ReadPosRankSum=-1.327;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:446,39:0.08:485
chr7	142470290	rs11769872	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:34,91:0.73:125
chr7	142470364	rs11770572	T	C	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:45,90:0.67:135
chr7	142470442	.	CA	AG	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=15.063;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-10.022;QD=1.48;ReadPosRankSum=-2.170;SOR=3.516;set=HC	GT:AD:AF:DP	0/1:91,11:0.11:102
chr7	142470450	.	C	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.894;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=17.232;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-10.356;QD=2.16;ReadPosRankSum=-1.757;SOR=3.736;set=HC	GT:AD:AF:DP	0/1:95,14:0.13:109
chr7	142470465	.	C	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.090;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=16.445;MLEAC=1;MLEAF=0.500;MQ=56.84;MQRankSum=-10.848;QD=4.16;ReadPosRankSum=-1.001;SOR=3.648;set=HC	GT:AD:AF:DP	0/1:100,20:0.17:120
chr7	142470467	.	T	G	489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=16.447;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-10.987;QD=3.98;ReadPosRankSum=-0.534;SOR=3.575;set=HC	GT:AD:AF:DP	0/1:103,20:0.16:123
chr7	142470574	rs3752404	A	G	1699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=1023;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=6.180;QD=1.70;ReadPosRankSum=-1.251;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:815,184:0.18:999
chr7	142470582	rs374775884	T	C	18248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.622;ClippingRankSum=0.000;DB;DP=1127;ExcessHet=3.0103;FS=5.096;MLEAC=1;MLEAF=0.500;MQ=57.66;MQRankSum=-16.854;QD=16.53;ReadPosRankSum=1.225;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:634,470:0.43:1104
chr7	142470585	.	G	A	6094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.914;ClippingRankSum=0.000;DP=1187;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-11.123;QD=5.24;ReadPosRankSum=-0.895;SOR=0.424;set=HC	GT:AD:AF:DP	0/1:959,205:0.18:1164
chr7	142470597	.	G	A	22987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.251;ClippingRankSum=0.000;DP=1415;ExcessHet=3.0103;FS=3.260;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-19.481;QD=16.51;ReadPosRankSum=2.699;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:778,614:0.44:1392
chr7	142470607	.	A	T	10201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;ClippingRankSum=0.000;DP=1604;ExcessHet=3.0103;FS=3.184;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-14.780;QD=6.45;ReadPosRankSum=-0.644;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:1261,320:0.20:1581
chr7	142470612	rs367807406	A	G	11800.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.226;ClippingRankSum=0.000;DB;DP=1692;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-15.925;QD=7.09;ReadPosRankSum=0.037;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:1279,386:0.23:1665
chr7	142470614	.	C	T	10808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012;ClippingRankSum=0.000;DP=1737;ExcessHet=3.0103;FS=2.220;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-16.484;QD=6.31;ReadPosRankSum=-0.734;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:1351,361:0.21:1712
chr7	142470645	rs368963025	T	C	22777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.772;ClippingRankSum=0.000;DB;DP=2122;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-27.099;QD=10.90;ReadPosRankSum=4.052;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:1250,840:0.40:2090
chr7	142470646	rs375588069	T	C	3703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.991;ClippingRankSum=0.000;DB;DP=2128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-12.082;QD=1.76;ReadPosRankSum=1.134;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:1703,402:0.19:2105
chr7	142470683	.	C	CCT	2501.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.034;ClippingRankSum=0.000;DP=1942;ExcessHet=3.0103;FS=12.310;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-15.671;QD=1.36;ReadPosRankSum=-4.924;SOR=2.146;set=HC	GT:AD:AF:DP	0/1:1650,195:0.11:1845
chr7	142470685	.	ATG	A	2453.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=13.408;ClippingRankSum=0.000;DP=1850;ExcessHet=3.0103;FS=15.346;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-16.449;QD=1.34;ReadPosRankSum=-5.686;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:1651,184:0.10:1835
chr7	142470686	.	T	C	8304.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.993;ClippingRankSum=0.000;DP=1809;ExcessHet=3.0103;FS=3.446;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-25.022;QD=4.63;ReadPosRankSum=-1.532;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:1475,318:0.18:1793
chr7	142470687	.	G	A	8337.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.496;ClippingRankSum=0.000;DP=1807;ExcessHet=3.0103;FS=3.446;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-25.003;QD=4.66;ReadPosRankSum=-2.178;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:1473,318:0.18:1791
chr7	142470691	rs10952531	G	C	17074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;ClippingRankSum=0.000;DB;DP=1768;ExcessHet=3.0103;FS=4.948;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=19.113;QD=9.70;ReadPosRankSum=3.567;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:917,843:0.48:1760
chr7	142470693	.	T	C	15759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.825;ClippingRankSum=0.000;DP=1741;ExcessHet=3.0103;FS=11.406;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-33.600;QD=9.09;ReadPosRankSum=-6.993;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:1284,450:0.26:1734
chr7	142470694	.	G	A	8024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=1724;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-25.660;QD=4.67;ReadPosRankSum=-4.675;SOR=1.020;set=HC	GT:AD:AF:DP	0/1:1427,292:0.17:1719
chr7	142470703	.	G	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.211;ClippingRankSum=0.000;DP=1596;ExcessHet=3.0103;FS=10.281;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-20.634;QD=0.31;ReadPosRankSum=-5.070;SOR=2.462;set=HC	GT:AD:AF:DP	0/1:1478,116:0.07:1594
chr7	142470707	.	A	G	249.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=17.419;ClippingRankSum=0.000;DP=1531;ExcessHet=3.0103;FS=13.488;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-19.282;QD=0.16;ReadPosRankSum=-3.078;SOR=2.893;set=HC	GT:AD:AF:DP	0/1:1438,91:0.06:1529
chr7	142470708	rs375249350	C	T	5844.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=1507;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-29.589;QD=3.88;ReadPosRankSum=-7.329;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:1291,214:0.14:1505
chr7	142470709	.	A	G	9693.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.347;ClippingRankSum=0.000;DP=1489;ExcessHet=3.0103;FS=9.868;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-37.458;QD=6.52;ReadPosRankSum=-7.861;SOR=1.430;set=HC	GT:AD:AF:DP	0/1:1198,289:0.19:1487
chr7	142470726	.	A	G	4096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.671;ClippingRankSum=0.000;DP=1170;ExcessHet=3.0103;FS=6.813;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-33.929;QD=3.51;ReadPosRankSum=-7.756;SOR=1.438;set=HC	GT:AD:AF:DP	0/1:1008,160:0.14:1168
chr7	142470733	.	G	A	1046.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DP=1065;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-25.074;QD=0.98;ReadPosRankSum=-8.515;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:968,95:0.09:1063
chr7	142470754	.	A	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.110;ClippingRankSum=0.000;DP=765;ExcessHet=3.0103;FS=14.703;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-25.581;QD=0.87;ReadPosRankSum=-8.211;SOR=3.108;set=HC	GT:AD:AF:DP	0/1:707,54:0.07:761
chr7	142470821	rs371709048	C	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.704;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-11.835;QD=0.35;ReadPosRankSum=0.532;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:216,28:0.11:244
chr7	142478608	rs73742439	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr7	142478755	rs73742441	T	C	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr7	142478771	rs201689354	A	AC	8070.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	142478881	.	T	TAG	1884.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103;ClippingRankSum=0.000;DP=654;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-16.174;QD=2.89;ReadPosRankSum=-4.001;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:567,85:0.13:652
chr7	142478897	rs73742442	T	C	21593.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,735:1.00:735
chr7	142478905	.	C	T	2916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932;ClippingRankSum=0.000;DP=755;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-17.941;QD=3.87;ReadPosRankSum=2.814;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:639,115:0.15:754
chr7	142478913	.	CC	TA	3021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.947;ClippingRankSum=0.000;DP=740;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-18.353;QD=4.09;ReadPosRankSum=4.152;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:621,118:0.16:739
chr7	142479912	rs200484890	C	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.719;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=12.482;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=-2.448;QD=5.95;ReadPosRankSum=1.263;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:239,61:0.20:300
chr7	142479915	rs377017470	T	C	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:217,85:0.28:302
chr7	142479917	rs369591097	C	T	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.693;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=9.568;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-2.667;QD=5.71;ReadPosRankSum=0.280;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:249,61:0.20:310
chr7	142479940	rs58649169	C	T	5056.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:156,212:0.58:368
chr7	142479954	rs201779716	C	T	3878.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:173,190:0.52:363
chr7	142480002	rs199512312	C	A	9229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.247;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-11.948;QD=18.03;ReadPosRankSum=2.396;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:215,297:0.58:512
chr7	142480012	rs56146961	C	T	7609.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:297,217:0.42:514
chr7	142480034	rs10808019	C	A	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:282,209:0.43:491
chr7	142480067	rs201659809	C	T	4091.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:162,177:0.52:339
chr7	142480079	rs371397657	T	G	4640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.885;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=6.549;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-14.098;QD=16.69;ReadPosRankSum=-2.200;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:150,128:0.46:278
chr7	142480083	.	A	C	4452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.624;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=6.964;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-14.817;QD=17.19;ReadPosRankSum=-2.103;SOR=1.092;set=HC	GT:AD:AF:DP	0/1:144,115:0.44:259
chr7	142480095	rs374574556	G	A	2070.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:115,84:0.42:199
chr7	142480126	rs374398930	C	A	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:61,18:0.23:79
chr7	142480137	rs57353422	A	G	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.40;QD=42.88;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	142480137	.	AGAACTACTGAG	GGAAGTACTGAC,GGAAGTACTGAG	1728	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=30;MMLQ=28;MQ=51.62;NF=5,6;NR=37,51;PP=1728,294;QD=42.6539970205;SC=TTCAGCCCAGAGAACTACTGA;SbPval=0.83;Source=Platypus;TC=64;TCF=11;TCR=53;TR=42,57;WE=142480156;WS=142480116;set=Platypus	GT:AF:DP	0/1:0.66:64
chr7	142480141	rs55775033	C	G	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=46.65;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	142480148	rs10808021	G	C	1687.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=6.682;QD=37.51;ReadPosRankSum=3.135;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:3,42:0.93:45
chr7	142481234	rs57725689	T	C	26287.77	.	AC=2;AF=1.00;AN=2;DB;DP=962;set=Intersection	GT:AD:AF:DP	1/1:0,960:1.00:960
chr7	142481376	rs73740310	T	A	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:1,271:1.00:272
chr7	142481807	rs4726591	C	T	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr7	142481867	rs59320698	C	G	9469.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr7	142482184	rs73740312	A	C	2773.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr7	142494606	rs2071361	C	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,64:0.67:96
chr7	142495126	rs12532977	GG	AT	5479.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;JOINED;set=Intersection	GT:AD:AF:DP	0/1:73,136:0.65:209
chr7	142495308	rs56352733	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr7	142498624	rs374783458	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.725;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=12.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=-4.036;SOR=3.000;set=HC	GT:AD:AF:DP	0/1:93,10:0.10:103
chr7	142498627	rs368978596	T	C	333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.125;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=19.660;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-4.736;SOR=3.872;set=HC	GT:AD:AF:DP	0/1:98,15:0.13:113
chr7	142498630	rs372653085	T	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.737;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=22.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-3.931;SOR=4.271;set=HC	GT:AD:AF:DP	0/1:108,17:0.14:125
chr7	142498635	.	C	CAG	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.462;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=30.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-3.907;SOR=4.788;set=HC	GT:AD:AF:DP	0/1:115,20:0.15:135
chr7	142498638	rs372878243	CCT	C	543.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.508;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=35.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-3.773;SOR=5.010;set=HC	GT:AD:AF:DP	0/1:123,24:0.16:147
chr7	142498652	rs377324607	CAT	C	1502.73	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:144,54:0.27:198
chr7	142498673	rs376425724	G	A	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:230,54:0.19:284
chr7	142498687	rs1799887	T	C	11431.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr7	142498699	.	A	G	4611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.652;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=2.319;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=5.675;QD=11.65;ReadPosRankSum=-0.809;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:267,129:0.33:396
chr7	142498702	.	C	T	5136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.650;ClippingRankSum=0.000;DP=407;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=5.670;QD=12.68;ReadPosRankSum=-0.191;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:273,132:0.33:405
chr7	142498705	.	ATT	A	5408.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.910;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=1.899;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.522;QD=12.49;ReadPosRankSum=-0.757;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:287,146:0.34:433
chr7	142498708	.	A	ACC	5408.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.246;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=5.521;QD=12.32;ReadPosRankSum=-0.378;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:291,148:0.34:439
chr7	142498735	rs377360215	A	C	8763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=4.806;QD=14.34;ReadPosRankSum=0.920;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:367,244:0.40:611
chr7	142498738	rs370415932	C	G	8777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.665;ClippingRankSum=0.000;DB;DP=636;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=4.798;QD=13.82;ReadPosRankSum=1.275;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:381,254:0.40:635
chr7	142498813	rs1042955	G	A	9714.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:393,458:0.54:851
chr7	142498833	.	A	T	14159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.460;ClippingRankSum=0.000;DP=824;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.18;ReadPosRankSum=1.782;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:449,375:0.46:824
chr7	142498837	rs1042957	C	T	14111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.921;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.42;ReadPosRankSum=1.263;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:439,371:0.46:810
chr7	142498897	rs1042959	A	G	13398.77	.	AC=1;AF=0.500;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	0/1:283,617:0.69:900
chr7	142499071	rs1042960	T	C	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:251,232:0.48:483
chr7	142499729	rs3114480	T	C	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr7	142499762	rs706	A	G	1040.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,51:0.40:129
chr7	142500409	rs11327	T	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr7	142510174	rs17270	C	T	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr7	142510309	rs17269	A	G	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr7	142510350	rs17268	G	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:197,104:0.35:301
chr7	142510446	rs17267	G	A	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:191,106:0.36:297
chr7	142562051	rs143667567	C	CCCTCCT	4669.73	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:249,228:0.48:477
chr7	142562534	rs8177144	G	A	2850.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:50,133:0.73:183
chr7	142563443	rs55893514	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr7	142564110	rs8177149	C	T	11006.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:246,496:0.67:742
chr7	142564854	rs6971720	G	A	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:78,124:0.61:202
chr7	142566163	rs6944571	C	G	23020.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr7	142566601	rs732518	G	A	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:55,77:0.58:132
chr7	142566661	rs8177176	T	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr7	142566684	.	C	CCT	3195.73	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,79:0.69:115
chr7	142567942	rs4987691	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:88,116:0.57:204
chr7	142569596	rs4987682	A	G	4220.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:114,198:0.63:312
chr7	142570142	rs4987679	T	C	8019.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:146,367:0.72:513
chr7	142571127	rs4987672	T	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	142571782	rs4987669	C	T	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr7	142572649	rs4987668	A	G	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:41,83:0.67:124
chr7	142572908	rs4987667	T	C	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:106,158:0.60:264
chr7	142573263	rs4987665	C	T	7084.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:128,318:0.71:446
chr7	142574913	rs4987657	A	G	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:111,164:0.60:275
chr7	142575067	rs4987656	C	T	9633.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:243,439:0.64:682
chr7	142575150	rs4987655	T	C	3034.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:72,114:0.61:186
chr7	142575239	rs4987654	A	T	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:33,58:0.64:91
chr7	142575369	rs4987653	C	T	4260.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:118,198:0.63:316
chr7	142575383	rs4987652	C	T	4640.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:130,205:0.61:335
chr7	142583330	rs17881456	A	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	142610003	.	G	GATCT	294.75	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr7	142611697	rs137964684	C	CA	763.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.432;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:28,49:0.64:77
chr7	142622714	rs4252435	G	A	2960.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:91,139:0.60:230
chr7	142625070	rs4252419	A	C	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr7	142625249	rs4252418	T	C	9889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=-2.803;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:140,262:0.65:402
chr7	142625258	rs4252417	G	A	9636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.90;ReadPosRankSum=-2.150;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:137,250:0.65:387
chr7	142625417	rs4252416	A	C	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr7	142625882	rs4252412	G	A	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:110,173:0.61:283
chr7	142625933	rs4252411	G	A	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:91,111:0.55:202
chr7	142626549	rs4236480	C	T	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr7	142626656	rs4252407	C	T	10867.77	.	AC=1;AF=0.500;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	0/1:299,505:0.63:804
chr7	142626773	rs4236481	A	C	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr7	142627076	rs4252403	AG	A	10438.73	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:193,306:0.61:499
chr7	142627138	rs4252402	G	A	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:298,165:0.36:463
chr7	142627580	rs4252400	G	T	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr7	142636541	rs28578436	T	G	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:102,146:0.59:248
chr7	142636599	rs11979330	G	A	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:111,142:0.56:253
chr7	142636704	rs11977017	T	C	3525.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:91,160:0.64:251
chr7	142639321	rs8176044	T	C	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.867;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.744;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr7	142640596	rs8176036	T	G	5220.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:128,230:0.64:358
chr7	142641087	rs7810229	G	A	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,61:0.69:88
chr7	142641207	rs7797908	T	C	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr7	142641382	rs8176031	A	G	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:101,112:0.53:213
chr7	142641603	rs8176029	C	CAGT	4907.73	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:68,123:0.64:191
chr7	142641917	rs8176027	G	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr7	142649844	rs117830571	T	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr7	142655113	rs8175976	C	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr7	142724062	rs9885986	C	T	870.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:129,50:0.28:179
chr7	142749417	rs17164102	C	T	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.812;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:102,33:0.24:135
chr7	142749737	rs17164103	C	T	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:366,179:0.33:545
chr7	142749953	rs11975892	C	T	3600.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:427,200:0.32:627
chr7	142750147	rs10245778	C	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:215,98:0.31:313
chr7	142836440	rs6959713	A	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	142919731	rs10260248	C	A	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:201,120:0.37:321
chr7	142990207	rs11287848	GT	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=-0.227;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	143017807	rs10282312	G	T	2438.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	143028536	rs2242493	G	A	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr7	143029371	rs2367941	G	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	143036318	rs2272253	G	A	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr7	143036337	rs2272252	C	T	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	143036548	rs6464542	T	A	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr7	143039311	rs940864	A	G	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	143042552	rs10952548	G	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=0.685;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr7	143042983	rs45554138	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr7	143043240	rs13438232	C	T	15291.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr7	143043377	rs56680997	C	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr7	143043607	rs2242492	G	C	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	143043890	rs2242491	A	G	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr7	143043902	rs2242490	C	T	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,73:0.65:112
chr7	143043939	rs2242489	T	C	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:45,81:0.64:126
chr7	143054585	rs6958357	A	G	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	143078928	rs10808025	C	G	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr7	143079806	rs6464546	G	A	3807.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:74,161:0.69:235
chr7	143085819	rs6954724	G	A	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:247,108:0.30:355
chr7	143085822	rs41277428	G	A	5262.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:111,239:0.68:350
chr7	143088823	rs1804527	T	C	2624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.715;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:320,155:0.33:475
chr7	143088867	rs6967117	T	C	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:203,99:0.33:302
chr7	143092269	rs34372369	G	A	5100.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:522,277:0.35:799
chr7	143095378	rs3812407	T	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:108,66:0.38:174
chr7	143097100	rs4725617	A	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=6.208;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.94;ReadPosRankSum=0.281;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:173,64:0.27:237
chr7	143105830	rs12703524	C	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.518;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr7	143140416	rs58270521	C	T	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr7	143141475	rs4595035	T	C	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr7	143175154	rs1404635	G	A	6710.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:199,332:0.63:531
chr7	143175345	rs10278721	C	T	3843.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:76,164:0.68:240
chr7	143747870	rs2961144	A	G	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:356,158:0.31:514
chr7	143748098	rs6464573	G	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:93,45:0.33:138
chr7	143748257	rs6464574	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:133,65:0.33:198
chr7	143748364	rs4407791	T	C	2346.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:163,120:0.42:283
chr7	143771536	rs6951485	G	A	1602.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:129,83:0.39:212
chr7	143772321	rs58564374	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr7	143807515	rs2961149	T	G	7203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-7.008;QD=16.71;ReadPosRankSum=-0.253;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:240,191:0.44:431
chr7	143807518	rs2951315	T	C	7215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-7.085;QD=16.44;ReadPosRankSum=0.181;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:247,192:0.44:439
chr7	143807674	rs2961150	T	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:48,38:0.44:86
chr7	143826603	rs2961160	G	T	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:278,157:0.36:435
chr7	143826697	rs2961161	C	G	1692.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:147,90:0.38:237
chr7	143826729	rs66549240	ACTT	A	1639.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:83,46:0.36:129
chr7	143827198	rs34308692	CT	C	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr7	143839408	rs1919954	C	T	3552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.397;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-1.290;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:355,200:0.36:555
chr7	143839605	rs1919953	T	C	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:120,72:0.38:192
chr7	143955741	rs199831033	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.153;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=5.61;ReadPosRankSum=1.359;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr7	143956461	rs199974780	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.194;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.836;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr7	143956742	rs77952084	C	G	4779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=1067;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=0.417;QD=4.48;ReadPosRankSum=0.061;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:767,300:0.28:1067
chr7	143979843	rs200127275	G	A	307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=48.00;MQRankSum=-3.975;QD=0.92;ReadPosRankSum=-1.692;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:282,51:0.15:333
chr7	144015434	rs141871720	A	G	7392.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.01;QD=46.20;SOR=1.944;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr7	144015437	rs150229766	C	T	7458.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.09;QD=43.62;SOR=2.002;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr7	144068163	rs146660641	T	C	1599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=6.071;MLEAC=1;MLEAF=0.500;MQ=47.30;MQRankSum=-4.050;QD=16.32;ReadPosRankSum=-1.390;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:37,61:0.62:98
chr7	144075749	rs1635079	A	G	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:251,118:0.32:369
chr7	144095600	rs2699503	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.089;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr7	144095730	rs11979528	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr7	144096456	rs11769787	C	T	987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-1.249;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:159,62:0.28:221
chr7	144096598	rs11769847	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-0.921;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:81,25:0.24:106
chr7	144096839	rs757388	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:55,19:0.26:74
chr7	144098896	rs727712	T	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:124,56:0.31:180
chr7	144098992	rs727714	G	A	1238.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:148,73:0.33:221
chr7	144100874	rs375024030	ACGGGC	A	1247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=0.064;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:62,35:0.36:97
chr7	144245543	rs111498606	GA	G	1238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=3.040;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.398;QD=4.82;ReadPosRankSum=0.047;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:158,99:0.39:257
chr7	144532829	rs111798915	A	AG	1169.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr7	144703163	rs35986454	T	G	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:171,68:0.28:239
chr7	144703301	rs7778697	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr7	145601352	rs6976183	A	G	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr7	145691755	.	G	GA	532.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr7	145691966	.	TTCTTCTTCTTCTTCTTCCTCC	T	1082.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=9.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.04;ReadPosRankSum=0.858;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:18,29:0.62:47
chr7	145692004	rs4726777	C	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.417;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr7	146805228	rs35167289	T	TG	644.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr7	146997203	rs2692185	T	A	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:60,122:0.67:182
chr7	147074998	rs6945709	G	T	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr7	147092861	rs34592169	G	A	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:103,146:0.59:249
chr7	147183278	rs4015951	CAAA	C,CAAAA	563.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=29;set=Intersection	GT:AF:DP	0/1:0.76:21
chr7	147335933	rs113545270	C	CT	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-0.179;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:22,39:0.64:61
chr7	147600604	rs2538962	C	A	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr7	147674880	rs10253762	G	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr7	147674912	rs2373284	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr7	147674948	rs10240482	A	T	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.547;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:47,79:0.63:126
chr7	147674978	rs10240503	A	G	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:47,94:0.67:141
chr7	147963925	rs3801974	C	G	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr7	147963983	rs10248273	G	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	147964016	rs3801975	A	G	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	147964091	rs3801976	G	A	8455.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr7	148080647	rs1637841	T	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	148080726	rs77706740	C	A	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:155,75:0.33:230
chr7	148106475	rs72268642	C	CTT	3197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-1.152;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:183,90:0.33:273
chr7	148106477	.	C	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=24;MQ=60.15;NF=52;NR=35;PP=2962;QD=20;SC=CTTTCTTTCTCTACAGCCAGT;SbPval=0.51;Source=Platypus;TC=269;TCF=162;TCR=107;TR=87;WE=148106498;WS=148106455;set=Platypus	GT:AD:AF:DP	0/1:182,87:0.32:269
chr7	148106477	.	C	CTG	3283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.233;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.092;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:191,91:0.32:282
chr7	148106490	rs9648691	G	A	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:218,106:0.33:324
chr7	148106654	rs13241417	T	C	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:78,48:0.38:126
chr7	148143136	rs2530301	A	G	10419.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr7	148463860	rs1014095	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr7	148464675	rs6956231	T	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr7	148483760	rs2072406	G	A	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:38,74:0.66:112
chr7	148487329	rs933436	G	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr7	148487395	rs2007404	T	C	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.236;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.14;ReadPosRankSum=0.225;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:42,69:0.62:111
chr7	148504716	rs3217095	AG	A	1760.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr7	148504854	rs55877618	A	AGACTT	2136.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:31,55:0.64:86
chr7	148504906	rs35866517	TAAA	T	187.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=-0.000;DB;DP=31;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.88;ReadPosRankSum=1.413;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr7	148506064	rs740949	A	G	4844.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:131,235:0.64:366
chr7	148507534	rs146223228	C	CT	1001.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr7	148508833	rs2072407	A	G	3840.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:98,178:0.64:276
chr7	148543525	rs10274535	A	G	4246.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:124,186:0.60:310
chr7	148543693	rs3214332	TA	T	2169.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:55,139:0.72:194
chr7	148638572	rs2035216	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	148700083	rs11414114	T	TC	3139.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,95:0.56:170
chr7	148700849	rs9065	C	T	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr7	148702157	rs28532077	C	T	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr7	148702486	rs7795577	A	G	7635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.71;ReadPosRankSum=-1.053;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:105,204:0.66:309
chr7	148702496	rs7777113	C	T	7238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.61;ReadPosRankSum=-1.026;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:92,180:0.66:272
chr7	148702958	rs150408680	AC	A	2086.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr7	148703243	rs11315544	AG	A	2264.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:26,77:0.75:103
chr7	148705221	rs2306172	A	G	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr7	148705490	rs10272564	G	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr7	148716320	rs56932055	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:35,82:0.70:117
chr7	148724945	rs6952916	T	C	10730.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:278,503:0.64:781
chr7	148725601	rs11546289	G	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr7	148725690	rs13243678	A	G	220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=31.54;ReadPosRankSum=-0.566;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr7	148809451	rs6464938	T	C	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=4.632;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.017;QD=5.50;ReadPosRankSum=0.593;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:167,85:0.34:252
chr7	148844884	rs2693317	G	A	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr7	148875632	rs1202461	T	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr7	148903984	rs12537763	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,43:0.68:63
chr7	148904293	rs147860582	C	CAAGGTTCTTCATAAG	907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=13.926;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.80;ReadPosRankSum=-0.400;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr7	148904343	rs6464946	A	T	2111.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:67,97:0.59:164
chr7	148904624	rs7784122	C	T	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr7	148907849	rs10952805	G	A	4677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.988;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:136,224:0.62:360
chr7	148907870	rs1202422	C	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:189,98:0.34:287
chr7	148909687	rs1202425	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	148936762	rs111428978	A	ACGG,ACGGCGGCGG	6997.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=178;set=Intersection	GT:AF:DP	1/2:0.25,0.75:154
chr7	148937136	rs1202427	C	A	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:70,47:0.40:117
chr7	148959272	rs141240216	C	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.336;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr7	148963652	rs61729506	C	T	1745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.875;QD=4.21;ReadPosRankSum=0.198;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:301,114:0.27:415
chr7	148990399	rs17554670	C	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:86,36:0.30:122
chr7	148990858	rs111503085	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,25:0.51:49
chr7	148991712	rs13236978	A	G	2178.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:261,132:0.34:393
chr7	149129422	rs71532779	G	A	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:271,156:0.37:427
chr7	149148319	rs4727071	T	C	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr7	149152770	rs3735319	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr7	149152906	rs3735318	G	A	7299.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	149174265	rs4725816	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr7	149174542	rs4727073	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,17:0.28:61
chr7	149190098	rs13311996	T	C	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.52;ReadPosRankSum=1.430;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:140,71:0.34:211
chr7	149191460	rs112293204	G	A	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:228,112:0.33:340
chr7	149256086	rs1978186	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr7	149317216	rs354056	A	G	2136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=1.317;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:61,101:0.62:162
chr7	149420820	rs11462346	C	CT	2964.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:35,111:0.76:146
chr7	149426232	rs855757	C	T	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:30,43:0.59:73
chr7	149426305	rs11424737	G	GC	7820.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	149427409	rs709065	T	G	15143.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:1,560:1.00:561
chr7	149475918	.	TG	T	4718.73	.	AC=1;AF=0.500;AN=2;DP=267;set=Intersection	GT:AD:AF:DP	0/1:87,172:0.66:259
chr7	149476666	rs57553723	G	GC	8689.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr7	149484798	rs62490656	C	T	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:119,161:0.57:280
chr7	149486574	rs855694	G	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr7	149493782	rs76190154	G	A	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr7	149499115	rs61047652	CAT	C	3615.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:56,91:0.62:147
chr7	149499152	rs140977594	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr7	149499318	rs2074690	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr7	149500472	rs10952229	A	G	6655.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:130,280:0.68:410
chr7	149500992	rs4725830	A	G	1345.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr7	149506211	rs71194663	G	GC	10256.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr7	149511985	rs10952230	A	G	6791.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:206,299:0.59:505
chr7	149523674	rs117730436	C	T	6419.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:162,280:0.63:442
chr7	149525906	.	C	G	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.199;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.628;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr7	149530894	rs6960187	G	A	6977.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:210,325:0.61:535
chr7	149543219	rs139634052	CT	C	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=3.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.389;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:180,45:0.20:225
chr7	149544681	rs10569456	GGTGTGTGTGT	G,GGTGTGT	678.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.71;SOR=1.493;set=HC	GT:AD:AF:DP	1/2:0,11,7:0.61,0.39:18
chr7	149558409	rs2240361	G	C	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:103,170:0.62:273
chr7	149559273	rs2074700	C	T	7079.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:165,302:0.65:467
chr7	149559465	rs2074701	C	T	12665.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;set=Intersection	GT:AD:AF:DP	0/1:334,577:0.63:911
chr7	149561049	rs3857764	C	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	149561255	.	AG	A	2302.73	.	AC=1;AF=0.500;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	0/1:57,78:0.58:135
chr7	149572842	rs10240203	G	C	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:111,175:0.61:286
chr7	149575707	rs6946997	C	G	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,51:0.65:78
chr7	149575725	rs6947011	C	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,59:0.60:99
chr7	149575747	rs5888369	TG	T	2544.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,74:0.56:132
chr7	149575884	rs10246226	T	C	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:66,132:0.67:198
chr7	149576818	rs7785847	A	G	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:69,132:0.66:201
chr7	149588429	rs4725317	G	A	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.61;QD=26.70;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	149589343	rs2626759	G	A	3067.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	149589496	rs11428600	A	AC	7421.73	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:25,233:0.90:258
chr7	149589599	rs4725318	C	A	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr7	149606918	rs200320073	T	TA	502.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.70;MQRankSum=-1.851;QD=15.23;ReadPosRankSum=3.885;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr7	149744835	rs141816877	C	T	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chr7	149981830	rs4725334	T	G	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:168,179:0.52:347
chr7	149990114	rs200308078	C	T	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-1.055;QD=5.88;ReadPosRankSum=0.319;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:103,54:0.34:157
chr7	149990333	.	A	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=13.116;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-5.211;QD=1.27;ReadPosRankSum=1.560;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:153,31:0.17:184
chr7	150067679	rs3757424	C	A	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr7	150067714	rs3757423	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr7	150068371	rs3735165	T	C	5987.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:192,280:0.59:472
chr7	150068933	rs6722	T	C	5918.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:130,253:0.66:383
chr7	150069395	rs3832490	GCCGCCAGGGGCC	G	14145.73	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:187,359:0.66:546
chr7	150093701	rs940453	A	C	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.868;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:126,38:0.23:164
chr7	150094851	rs13225910	A	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:202,109:0.35:311
chr7	150095271	rs7393	T	C	1071.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:94,50:0.35:144
chr7	150217248	rs3735081	A	G	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:167,111:0.40:278
chr7	150217335	rs3735079	G	T	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:227,125:0.36:352
chr7	150269087	rs13242186	G	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr7	150269192	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=0.737;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:140,27:0.16:167
chr7	150269542	rs2293172	G	T	8904.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr7	150327234	.	CAAA	C	191.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.98;ReadPosRankSum=0.189;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr7	150384048	.	A	AAAAG	767.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.762;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.03;MQRankSum=0.730;QD=25.59;ReadPosRankSum=0.938;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr7	150384193	.	CGTGTGTGT	C,CGTGT	664.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=-0.387;QD=36.93;ReadPosRankSum=0.071;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:2,5,11:0.28,0.61:18
chr7	150389593	rs1860871	T	C	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr7	150389856	rs2075078	A	G	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr7	150416050	rs72264755	GGTGGTTATGCCTATTT	G	2104.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=43.85;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	150418045	rs2286900	G	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	150437927	rs9657894	C	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr7	150438089	rs4725936	T	C	8925.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr7	150438161	rs9657898	T	G	3640.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr7	150439500	rs759011	C	T	13410.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr7	150440043	rs1046355	C	T	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr7	150440243	rs10361	G	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr7	150446692	rs9969243	C	T	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr7	150446936	rs2058447	A	G	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr7	150447027	rs28505524	T	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr7	150491995	.	CCA	C	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.614;QD=3.12;ReadPosRankSum=-1.548;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:52,19:0.27:71
chr7	150493495	rs11546671	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:71,35:0.33:106
chr7	150498836	rs2075079	C	G	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,62:0.64:97
chr7	150499164	.	T	TTTCTCTTCTC	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=10.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-0.337;SOR=2.207;set=HC	GT:AD:AF:DP	0/1:43,30:0.41:73
chr7	150499267	rs12668797	C	A	4043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.781;QD=13.30;ReadPosRankSum=-0.175;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:114,190:0.62:304
chr7	150500356	rs741068	T	C	2443.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:50,113:0.69:163
chr7	150500455	rs741067	A	G	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:63,135:0.68:198
chr7	150500527	rs117401275	C	T	1688.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,77:0.65:119
chr7	150500729	rs741064	A	G	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:38,82:0.68:120
chr7	150501455	rs10378	G	T	2504.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:93,119:0.56:212
chr7	150501516	rs9088	A	G	4242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.291;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=1.203;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:142,203:0.59:345
chr7	150555810	rs45455308	G	A	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:79,131:0.62:210
chr7	150556002	rs1049748	T	C	4664.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:143,212:0.60:355
chr7	150556055	rs6943147	CG	GC	12780.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr7	150556803	rs55671932	A	G	996.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-1.270;QD=15.57;ReadPosRankSum=2.377;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:18,46:0.72:64
chr7	150557390	rs45615934	G	A	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr7	150558366	rs12539	C	T	6071.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:99,254:0.72:353
chr7	150558444	rs34090933	G	GCA	2134.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr7	150644333	rs190636009	C	A	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr7	150645534	rs1805123	T	G	3044.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:98,187:0.66:285
chr7	150645682	rs2968860	G	A	9524.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr7	150647969	rs2072413	CC	TG	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;JOINED;set=Intersection	GT:AD:AF:DP	0/1:31,38:0.55:69
chr7	150648198	rs1137617	A	G	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr7	150648789	rs1805121	T	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:263,135:0.34:398
chr7	150648986	rs2072411	G	C	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:43,70:0.62:113
chr7	150652286	rs887586	C	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr7	150652419	rs876088	T	C	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=1.293;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:113,72:0.39:185
chr7	150654622	rs11462566	A	AG	1044.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr7	150655624	rs758891	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr7	150655643	rs758890	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr7	150672162	rs11410979	T	TC	566.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr7	150706383	rs753482	C	A	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:345,238:0.41:583
chr7	150706621	rs137919476	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:141,59:0.29:200
chr7	150707488	rs743507	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr7	150708089	rs891512	A	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:135,76:0.36:211
chr7	150708850	rs2256314	G	A	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr7	150713902	rs11393607	G	GC	2844.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr7	150714123	.	C	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.149;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.891;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:93,20:0.18:113
chr7	150715817	rs1835428	A	G	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:295,122:0.29:417
chr7	150715947	rs7804893	T	C	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:175,86:0.33:261
chr7	150720902	rs13307588	A	G	30269.77	.	AC=2;AF=1.00;AN=2;DB;DP=1149;set=Intersection	GT:AD:AF:DP	1/1:1,1146:1.00:1147
chr7	150725722	rs2303922	A	C	795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.666;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:81,46:0.36:127
chr7	150731338	rs2303923	G	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr7	150732630	rs41282730	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:41,13:0.24:54
chr7	150732812	rs17545756	C	T	5252.77	.	AC=1;AF=0.500;AN=2;DB;DP=980;set=Intersection	GT:AD:AF:DP	0/1:679,301:0.31:980
chr7	150733115	rs76225344	G	A	3202.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:383,181:0.32:564
chr7	150733271	rs76802349	T	C	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:120,83:0.41:203
chr7	150734196	rs77329175	C	T	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.932;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:33,34:0.51:67
chr7	150734364	rs78023969	G	T	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:198,82:0.29:280
chr7	150742408	rs59397762	G	T	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:102,52:0.34:154
chr7	150747650	rs62001897	G	T	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:359,212:0.37:571
chr7	150747746	rs2288645	A	G	6546.77	.	AC=1;AF=0.500;AN=2;DB;DP=1098;set=Intersection	GT:AD:AF:DP	0/1:719,377:0.34:1096
chr7	150752066	rs891507	T	C	5778.77	.	AC=1;AF=0.500;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	0/1:624,338:0.35:962
chr7	150752608	rs2069456	T	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr7	150760076	rs34403003	G	C	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr7	150761150	rs6464122	C	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr7	150761314	rs2303929	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:97,50:0.34:147
chr7	150761880	rs2303931	C	A	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:180,103:0.36:283
chr7	150763655	rs2229549	T	A	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr7	150765065	rs2229550	T	C	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:130,65:0.33:195
chr7	150768786	rs2303937	G	A	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=10.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.941;SOR=1.145;set=HC	GT:AD:AF:DP	0/1:232,85:0.27:317
chr7	150773072	rs2303939	G	C	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=5.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-1.196;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:183,74:0.29:257
chr7	150773807	rs7262	A	T	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr7	150775306	rs2303942	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr7	150783756	.	TGCC	T	2589.73	.	AC=2;AF=1.00;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr7	150783900	.	C	CG	1355.73	.	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=45.19;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	150783903	.	T	G	1454.77	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=45.46;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr7	150783906	.	C	G	1546.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=49.90;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr7	150783908	.	C	CG	1627.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.34;QD=49.33;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	150783911	.	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.41;QD=47.89;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	150783917	.	T	G	2311.77	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.51;QD=52.54;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr7	150783919	.	GTCT	G	2697.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=51.88;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	150783922	.	T	TGGGG	2697.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=51.88;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr7	150784407	rs13239507	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr7	150812493	rs6971966	G	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.033;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr7	150825567	rs2288650	C	T	2374.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.145;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=20.294;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.19;ReadPosRankSum=1.728;SOR=9.346;set=HC	GT:AD:AF:DP	1/1:1,106:0.99:107
chr7	150825839	rs7808252	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr7	150864240	rs13241978	G	C	2064.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:71,94:0.57:165
chr7	150873608	rs310598	A	G	3392.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:70,152:0.68:222
chr7	150878260	rs2253592	C	G	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	150883761	rs2257090	C	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:221,120:0.35:341
chr7	150884266	rs34383739	C	CAG	2240.73	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:244,99:0.29:343
chr7	150905239	.	AG	A	519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-0.464;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:67,27:0.29:94
chr7	150915102	rs79537035	C	T	14388.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr7	150916114	rs35656219	CAGG	C	7676.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr7	150916228	rs6949587	G	A	5206.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=26.30;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr7	150918914	rs4726007	G	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr7	150921296	.	A	AT	495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=383;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=1.69;ReadPosRankSum=2.296;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:222,71:0.24:293
chr7	150921950	rs6464133	A	G	8066.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr7	150931268	rs2608293	C	G	12671.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr7	150934162	rs2446065	G	C	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr7	150934975	rs2487154	C	G	11899.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:1,448:1.00:449
chr7	150937377	rs61667463	C	CG	2890.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:2,83:0.98:85
chr7	150939193	rs4725398	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	150939359	rs219227	C	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	150939396	rs219228	C	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr7	150940657	rs122815	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr7	150972189	rs2072298	G	A	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr7	151038887	rs113920358	C	T	842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=1.173;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:95,49:0.34:144
chr7	151048484	rs449081	G	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr7	151049002	rs60437024	A	ATCACACAC,AACACACACACAC	1149.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=28;set=Intersection	GT:AF:DP	1/1:1.00:18
chr7	151049025	rs379931	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr7	151049231	rs366355	C	T	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr7	151049337	rs394259	A	G	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr7	151049818	rs444648	C	G,T	1347.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=22.84;SOR=1.123;set=HC	GT:AD:AF:DP	1/2:0,19,40:0.32,0.68:59
chr7	151049983	rs73472502	G	A	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.392;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:46,40:0.47:86
chr7	151053043	rs446886	A	G	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr7	151053204	rs75578141	T	C	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:165,98:0.37:263
chr7	151057396	rs3217033	AC	A	4448.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:127,155:0.55:282
chr7	151064064	rs386956	C	T	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:53,70:0.57:123
chr7	151064305	rs367191	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr7	151073658	rs736469	C	G	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr7	151078735	rs4141455	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,18:0.36:50
chr7	151097323	rs11767693	A	G	2614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=0.227;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:84,128:0.60:212
chr7	151106066	rs12533730	C	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:67,139:0.67:206
chr7	151108411	rs917613	T	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr7	151254175	rs8961	T	C	3241.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:100,152:0.60:252
chr7	151254445	rs764801	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr7	151254462	rs764800	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr7	151261040	rs28763999	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	151267397	rs2302530	G	A	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.485;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=1.742;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr7	151292395	rs35348247	A	AT	1825.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr7	151432869	rs1547470	T	C	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	151483445	rs12671980	A	G	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr7	151504019	rs9648725	T	C	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr7	151504499	rs10257529	G	A	632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.091;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:165,48:0.23:213
chr7	151668180	.	C	CTAGA	318	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=21;MQ=60.0;NF=0;NR=5;PP=318;QD=64.6;SC=CTCTCATTCTCTAGATAGATA;SbPval=1.0;Source=Platypus;TC=23;TCF=1;TCR=22;TR=5;WE=151668188;WS=151668170;set=Platypus	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	151668224	rs58859718	A	AT	157.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.28;ReadPosRankSum=2.178;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr7	151668225	rs1919521	A	T,AGAT	351.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AF:DP	1/2:0.47,0.53:15
chr7	151680072	rs6960270	T	C	9973.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr7	151684168	rs4726127	C	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	151723022	rs72200904	TGCG	T	2960.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr7	151791170	rs17173334	T	G	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr7	151818470	rs73478979	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr7	151818777	rs967093	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr7	151843693	rs143292008	T	A	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr7	151860230	rs142835638	G	C	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:275,119:0.30:394
chr7	151877127	rs13231116	G	T	2900.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:89,130:0.59:219
chr7	151944961	rs1623137	T	A	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.572;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-0.016;QD=4.02;ReadPosRankSum=-0.551;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:233,81:0.26:314
chr7	151945007	rs137949498	C	T	5202.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:389,267:0.41:656
chr7	151945071	rs150073007	G	GT	7167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=1092;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=0.634;QD=6.71;ReadPosRankSum=0.344;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:781,287:0.27:1068
chr7	151945140	rs57648310	C	T	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	0/1:642,325:0.34:967
chr7	151945167	rs2537264	G	T	3713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=815;ExcessHet=3.0103;FS=5.754;MLEAC=1;MLEAF=0.500;MQ=53.27;MQRankSum=-5.703;QD=4.57;ReadPosRankSum=-3.179;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:584,228:0.28:812
chr7	151945204	rs4024453	G	A	2491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.076;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=97.825;MLEAC=1;MLEAF=0.500;MQ=51.66;MQRankSum=-17.299;QD=4.77;ReadPosRankSum=-1.571;SOR=6.341;set=HC	GT:AD:AF:DP	0/1:400,122:0.23:522
chr7	151962055	rs115431229	C	T	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:104,28:0.21:132
chr7	151962068	.	T	C	3205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.993;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.14;MQRankSum=-10.000;QD=13.30;ReadPosRankSum=-7.140;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:155,86:0.36:241
chr7	151962077	rs62478355	C	G	2097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=-8.677;QD=6.26;ReadPosRankSum=-3.659;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:228,107:0.32:335
chr7	151962113	rs374868690	G	T	2287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=870;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=49.59;MQRankSum=-6.741;QD=2.63;ReadPosRankSum=1.973;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:691,179:0.21:870
chr7	151962257	rs62478357	C	T	2957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.813;ClippingRankSum=0.000;DB;DP=1522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.91;MQRankSum=-13.523;QD=1.94;ReadPosRankSum=-3.197;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:1341,181:0.12:1522
chr7	151962265	rs201834857	C	T	2822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=1339;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=50.21;MQRankSum=-13.779;QD=2.11;ReadPosRankSum=-4.958;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:1185,154:0.12:1339
chr7	151970758	.	G	A	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.992;ClippingRankSum=0.000;DP=573;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-1.820;QD=2.05;ReadPosRankSum=-0.162;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:465,105:0.18:570
chr7	151970856	rs10454320	T	A	22640.77	.	AC=1;AF=0.500;AN=2;DB;DP=1419;set=Intersection	GT:AD:AF:DP	0/1:440,973:0.69:1413
chr7	151970931	rs56850341	G	A	5214.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:317,197:0.38:514
chr7	152055766	.	G	GA	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=3.628;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.481;QD=2.30;ReadPosRankSum=-0.342;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:58,21:0.27:79
chr7	152373252	rs3218384	C	G	2937.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:324,164:0.34:488
chr7	152511598	rs112910296	C	T	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:63,92:0.59:155
chr7	152511781	rs142152218	C	T	3611.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:126,168:0.57:294
chr7	152513740	.	T	TA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.259;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=10.665;MLEAC=1;MLEAF=0.500;MQ=54.29;MQRankSum=-3.978;QD=0.93;ReadPosRankSum=-2.667;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr7	152513769	rs116164729	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:31,7:0.18:38
chr7	152520731	rs3864524	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:7,29:0.81:36
chr7	152550444	rs75649710	T	C	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr7	152550499	rs4726215	T	C	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:38,72:0.65:110
chr7	153749753	rs1974615	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.034;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=1.145;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:61,12:0.16:73
chr7	153749772	rs374262699	TTGC	T	709.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,22:0.28:78
chr7	153749805	rs4015718	CT	C	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.048;QD=4.96;ReadPosRankSum=-0.157;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:45,41:0.48:86
chr7	153750096	rs2533730	G	A	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-5.759;QD=1.56;ReadPosRankSum=0.178;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr7	153750160	rs199977459	TC	T	607.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr7	153750224	.	A	G	31.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.242;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.97;ReadPosRankSum=-1.242;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr7	153750225	.	A	C	31.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.981;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.54;ReadPosRankSum=-1.981;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr7	153750228	.	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=-1.981;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr7	153750230	.	T	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=-1.981;SOR=2.258;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr7	153750319	.	G	GC	107	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr7	154237842	rs28645456	T	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.60;ReadPosRankSum=0.894;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr7	154429560	rs11243339	C	T	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr7	154429657	rs6972501	T	C	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr7	154461112	rs3807218	A	G	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr7	154461248	.	TTGTGTGTG	T,TTG	3438.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=131;set=Intersection	GT:AF:DP	1/2:0.16,0.83:88
chr7	154461291	rs4960721	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr7	154561188	rs56091483	C	T	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr7	154564677	rs11291131	CA	C	699.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=7.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=0.509;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:19,53:0.74:72
chr7	154587367	rs10274635	G	A	582.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr7	154587494	.	C	CA	896	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=12;HapScore=3;MGOF=9;MMLQ=23;MQ=60.92;NF=30;NR=49;PP=896;QD=11.417721519;SC=ACAATACATGCAAAAAAAAAA;SbPval=0.35;Source=Platypus;TC=111;TCF=38;TCR=73;TR=79;WE=154587519;WS=154587484;set=Platypus	GT:AD:AF:DP	1/0:32,79:0.71:111
chr7	154587503	rs201537690	AAAAGAAAAG	A	430.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.182;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=7.779;MLEAC=1;MLEAF=0.500;MQ=60.97;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.304;SOR=1.298;set=HC	GT:AD:AF:DP	0/1:108,48:0.31:156
chr7	154587504	.	AAAGAAAAG	A	83.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=4.980;MLEAC=1;MLEAF=0.500;MQ=60.97;MQRankSum=0.000;QD=0.54;ReadPosRankSum=0.397;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:125,31:0.20:156
chr7	154587507	rs3778731	G	A	230.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=-2.143;QD=1.49;ReadPosRankSum=0.409;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:123,32:0.21:155
chr7	154592965	rs12531589	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr7	154596517	rs2280659	G	A	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:174,72:0.29:246
chr7	154598639	rs11764611	G	A	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:80,58:0.42:138
chr7	154598908	rs2293357	A	G	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr7	154645406	rs6962284	A	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr7	154645419	rs145928686	G	GTTTTC	2069.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.518;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:106,54:0.34:160
chr7	154667628	rs2293353	A	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=-1.025;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:104,35:0.25:139
chr7	154667643	rs2230064	G	A	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.200;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr7	154679447	rs940378	G	A	14460.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr7	154681142	rs11335725	CT	C	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.299;QD=2.78;ReadPosRankSum=0.968;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:151,100:0.40:251
chr7	154735950	rs930436	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr7	154738409	rs3501	T	C	4326.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:101,207:0.67:308
chr7	154748908	rs3817480	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr7	154751774	rs2272174	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr7	154759671	rs893942	T	C	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr7	154760369	rs935037	A	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:43,114:0.73:157
chr7	154760666	rs61752011	C	T	5070.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:93,219:0.70:312
chr7	154785362	rs306281	A	G	6433.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:191,316:0.62:507
chr7	154862188	rs3823534	A	G	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:132,66:0.33:198
chr7	154862508	rs3734967	A	G	2375.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:274,139:0.34:413
chr7	154862591	rs1800883	G	C	47262.77	.	AC=2;AF=1.00;AN=2;DB;DP=1232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.39;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,1231:1.00:1231
chr7	154862591	.	GC	CC,CT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=59.98;NF=626,396;NR=528,337;PP=2962,2944;QD=20;SC=GTACCCCAGGGCGGTCTCCTG;SbPval=0.54;Source=Platypus;TC=1170;TCF=634;TCR=536;TR=1154,733;WE=154862600;WS=154862581;set=Platypus	GT:AF:DP	0/1:0.99:1170
chr7	154862592	rs55967309	C	T	17610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.579;ClippingRankSum=0.000;DB;DP=1245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=2.770;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:447,796:0.64:1243
chr7	154863467	rs2241859	G	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr7	154875780	rs1730208	G	A	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:89,40:0.31:129
chr7	154876342	rs980442	T	G	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr7	155095452	rs79984271	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr7	155095686	.	CTT	C	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=8.387;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=5.12;ReadPosRankSum=1.219;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr7	155150443	rs3923205	G	A	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:189,97:0.34:286
chr7	155150460	rs3923204	G	T	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:204,93:0.31:297
chr7	155150472	rs3922604	G	A	8418.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr7	155150560	rs6605563	A	G	13223.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr7	155150602	rs6605562	T	C	15209.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr7	155150765	rs7456618	C	T	9462.77	.	AC=1;AF=0.500;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	0/1:241,436:0.64:677
chr7	155187691	rs2885336	T	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.55;SOR=6.138;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr7	155187889	rs11763974	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr7	155251433	rs3735653	C	T	1128.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr7	155295804	rs35244674	GA	G	1372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.798;QD=3.35;ReadPosRankSum=-2.200;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:264,146:0.36:410
chr7	155295854	rs7804744	G	A	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:75,172:0.70:247
chr7	155437475	rs7786826	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr7	155465422	rs7811556	C	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr7	155465438	.	CAAAA	C	546.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.009;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.25;ReadPosRankSum=0.893;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr7	155503920	rs7800753	A	T	11717.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:3,435:0.99:438
chr7	155593438	rs1233560	G	A	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	155598879	rs1233554	A	C	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr7	155599300	rs1233555	C	T	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr7	155747865	rs7798508	C	G	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr7	155747907	rs7810074	T	C	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:233,139:0.37:372
chr7	155749951	rs35655547	C	T	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=-0.142;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:292,104:0.26:396
chr7	155749974	rs10440919	GC	AA	10583.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;JOINED;set=Intersection	GT:AD:AF:DP	0/1:89,262:0.75:351
chr7	155750033	rs10256182	A	G	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr7	155755336	rs7807731	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:46,60:0.57:106
chr7	155755826	rs2007015	A	G	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	155757502	rs1551630	T	C	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr7	156433243	rs7788200	C	G	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:56,140:0.71:196
chr7	156436769	rs7804211	C	T	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr7	156468377	rs2886380	GC	CA	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;JOINED;set=Intersection	GT:AD:AF:DP	0/1:44,109:0.71:153
chr7	156468656	rs2365513	G	A	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr7	156468939	rs140092411	G	GTGTA	1922.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr7	156469096	rs2302149	C	T	7525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.175;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:195,343:0.64:538
chr7	156469133	rs2302147	C	G	7159.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:171,318:0.65:489
chr7	156469179	rs2302146	C	T	5773.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:138,257:0.65:395
chr7	156469190	rs2302145	A	G	5375.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:133,242:0.65:375
chr7	156473779	rs71838136	T	TA	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.896;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.053;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr7	156476683	rs3735186	T	A	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr7	156529062	rs10640672	C	CAGT	1560.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr7	156549195	rs17571054	G	A	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr7	156626273	.	ATTG	A,AGAACCAGTGTTG	547.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=10;set=Intersection	GT:AF:DP	1/1:1.00:10
chr7	156626277	.	G	GAACCAGTGCTAA	547.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.77;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr7	156685519	rs200299453	G	GC	1918.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr7	156685538	.	TCCGGGGA	T	773.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.141;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=-1.663;QD=8.41;ReadPosRankSum=-0.072;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr7	156685540	.	C	CG	2370.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.843;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.210;QD=30.01;ReadPosRankSum=-0.095;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:25,54:0.68:79
chr7	156685545	.	A	C	2502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=1.682;QD=27.20;ReadPosRankSum=-0.597;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:25,67:0.73:92
chr7	156685590	rs117769123	G	A	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:64,128:0.67:192
chr7	156685592	rs117913319	A	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:133,63:0.32:196
chr7	156742501	rs6969990	C	G	685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=-1.847;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:32,33:0.51:65
chr7	156742749	rs6969196	G	A	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:82,136:0.62:218
chr7	156742796	rs6952214	A	C	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:120,148:0.55:268
chr7	156742965	rs61734937	G	C	7221.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:157,326:0.67:483
chr7	156743264	rs61747373	C	A	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:60,139:0.70:199
chr7	156746701	rs61122657	T	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:35,54:0.61:89
chr7	156746727	rs58846177	T	C	2090.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:47,93:0.66:140
chr7	156754981	rs3750131	T	C	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:57,108:0.65:165
chr7	156755350	rs12672076	T	C	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:141,72:0.34:213
chr7	156759597	rs34856615	ATATAT	A	1676.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:108,50:0.32:158
chr7	156761751	rs9969350	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr7	156761818	rs2302445	G	A	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:129,52:0.29:181
chr7	156762224	rs2302443	G	C	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.490;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:135,44:0.25:179
chr7	156762248	rs12919	G	A	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.142;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:145,52:0.26:197
chr7	156762446	rs3087905	G	T	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr7	156802643	.	A	AGCGGCG	321.75	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;QD=40.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr7	156932094	rs200844106	G	GGGACTCGGGGTT	2966.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr7	156932105	rs59178327	C	T	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=18.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.932;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:83,53:0.39:136
chr7	156962874	rs6956046	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr7	156967831	rs67677307	C	CTTTT	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.634;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr7	156971581	rs870745	T	C	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr7	156981672	rs7802642	A	G	1321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.168;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.570;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:193,79:0.29:272
chr7	157000176	rs2301914	T	C	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:182,97:0.35:279
chr7	157023721	rs2301947	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr7	157049530	rs1182373	T	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr7	157049809	rs2301946	G	A	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:96,48:0.33:144
chr7	157208617	rs1009135	C	T	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr7	157261201	rs4716743	T	G	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr7	157261258	rs4716744	C	T	18815.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr7	157261275	rs4716745	C	T	13265.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:2,491:1.00:493
chr7	157261292	rs4716746	A	G	24210.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr7	157261945	rs2109830	A	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr7	157261953	rs11449038	C	CG	5624.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr7	157262170	rs7801907	T	C	4716.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr7	157262226	rs7778458	G	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr7	157262920	rs7806450	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	157263015	rs7784276	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;QD=43.08;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr7	157263025	rs7783247	GA	CG	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=43.59;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	157263050	rs7802789	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.44;QD=42.98;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr7	157263093	rs7783385	G	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.31;QD=50.68;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr7	157263532	rs7785035	C	T	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	157318407	.	TACTGTCGG	CACCGTCTG,CAGTGTCGC	482	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=18;MMLQ=23;MQ=56.92;NF=6,13;NR=1,3;PP=482,377;QD=77.9239821232;SC=GGGCCGTGTGTACTGTCGGAG;SbPval=0.81;Source=Platypus;TC=37;TCF=29;TCR=8;TR=7,16;WE=157318423;WS=157318397;set=Platypus	GT:AF:DP	0/1:0.19:37
chr7	157318438	.	G	C	211	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=28;MQ=58.52;NF=13;NR=3;PP=211;QD=15.3607007842;SC=GCCGTGTGCAGTGTCGCAGGG;SbPval=0.71;Source=Platypus;TC=49;TCF=38;TCR=11;TR=16;WE=157318446;WS=157318428;set=Platypus	GT:AD:AF:DP	1/0:33,16:0.33:49
chr7	157333542	rs1124400	C	T	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:113,60:0.35:173
chr7	157333568	.	C	T	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.279;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=4.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.081;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:99,27:0.21:126
chr7	157341556	rs3214337	GC	G	565.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr7	157361564	rs7789467	C	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:186,94:0.34:280
chr7	157361734	rs221294	T	C	15691.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,584:1.00:584
chr7	157367205	rs146248159	T	TGA	630.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.402;QD=7.09;ReadPosRankSum=-1.935;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr7	157369564	rs221301	C	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr7	157370645	rs736940	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,30:0.43:70
chr7	157370688	rs122004	C	G	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr7	157387984	rs78328889	G	C	895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.992;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-1.262;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:110,55:0.33:165
chr7	157396697	rs17853260	G	A	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:291,151:0.34:442
chr7	157406819	rs10247739	A	C	877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=-0.260;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:90,54:0.38:144
chr7	157414064	rs1130502	G	A	1422.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:116,70:0.38:186
chr7	157462117	rs5888726	G	GCA	2042.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:130,77:0.37:207
chr7	157462425	rs755703	T	C	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr7	157462464	rs1079359	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr7	157691523	rs56112490	T	C	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr7	157800838	rs143545915	AGT	A	5727.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	157800899	rs12666418	C	T	10646.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr7	157873975	rs3800863	T	C	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr7	157903478	rs3800861	A	G	5013.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:559,298:0.35:857
chr7	157926349	rs17847428	T	G	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr7	157929223	rs3800858	G	A	1224.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:140,67:0.32:207
chr7	157929246	rs3839696	G	GA	1603.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.545;QD=5.09;ReadPosRankSum=-0.355;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:212,103:0.33:315
chr7	157930974	rs3752366	C	T	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.924;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=-0.448;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr7	157930979	rs3752367	C	G	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=-1.837;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:66,34:0.34:100
chr7	157931119	rs1130500	A	G	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:226,107:0.32:333
chr7	157931144	rs1130499	C	T	3198.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:215,98:0.31:313
chr7	157931263	rs3752371	G	C	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:118,61:0.34:179
chr7	157959636	rs1130498	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr7	157959911	rs1130495	A	G	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr7	157984992	rs3800856	G	A	253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.374;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=-1.404;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr7	157985149	rs3800855	C	G	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:424,193:0.31:617
chr7	158055842	rs201693718	GCA	G	5650.73	.	AC=1;AF=0.500;AN=2;DB;DP=734;MQ=60.07;set=Intersection	GT:AD:AF:DP	0/1:436,289:0.40:725
chr7	158325503	rs4909237	C	T	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:127,59:0.32:186
chr7	158334101	rs10623822	T	TTA	381.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr7	158438186	rs2290393	G	A	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:194,108:0.36:302
chr7	158444975	rs1466210	T	G	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=-1.863;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:53,46:0.46:99
chr7	158450965	rs12533939	A	T	1305.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:123,70:0.36:193
chr7	158455089	rs4484634	G	A	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,28:0.35:80
chr7	158456710	rs10227735	C	T	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr7	158457095	rs2290392	G	C	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr7	158473339	rs2305470	G	T	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr7	158476148	rs6969248	G	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:218,117:0.35:335
chr7	158527051	rs3750052	T	C	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:56,109:0.66:165
chr7	158527260	rs3763413	T	G	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr7	158528158	rs3816461	C	G	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr7	158528170	rs7787974	G	A	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr7	158528233	rs3816462	A	G	1964.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:88,99:0.53:187
chr7	158528254	rs34974906	G	A	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:94,94:0.50:188
chr7	158528269	rs35914882	C	G	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:90,96:0.52:186
chr7	158528357	rs35865957	C	T	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:38,43:0.53:81
chr7	158528443	rs3816463	T	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr7	158529560	rs6961811	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr7	158529704	rs6960873	G	A	4882.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:162,233:0.59:395
chr7	158529889	rs2305467	T	G	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr7	158531641	rs7803766	G	A	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr7	158531692	rs7804970	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr7	158531888	rs7780879	G	A	3343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.57;ReadPosRankSum=1.473;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:67,88:0.57:155
chr7	158531893	rs7800556	A	G	3244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.22;ReadPosRankSum=1.645;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:63,83:0.57:146
chr7	158532007	rs7804422	T	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr7	158534163	rs66689505	T	TG	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr7	158534381	rs59980573	G	C	7534.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:208,361:0.63:569
chr7	158534690	rs34849374	CTT	C	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=-1.201;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr7	158534707	rs35420830	T	A	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.009;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=7.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.84;ReadPosRankSum=-0.186;SOR=3.737;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr7	158536154	rs2305472	A	G	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr7	158536267	rs2305473	T	C	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=1.364;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:74,118:0.61:192
chr7	158536345	rs2305475	A	G	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:68,84:0.55:152
chr7	158536376	rs2305476	A	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.706;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=5.458;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.81;ReadPosRankSum=-1.955;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:60,65:0.52:125
chr7	158536388	rs2305477	A	C	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-1.220;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:59,66:0.53:125
chr7	158536402	rs71547563	C	G	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.96;ReadPosRankSum=0.764;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:57,64:0.53:121
chr7	158536408	rs71547564	T	C	2347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.289;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.42;ReadPosRankSum=1.940;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:54,61:0.53:115
chr7	158536411	rs71547565	T	C	2347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.78;ReadPosRankSum=2.616;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:54,59:0.52:113
chr7	158536422	rs71547566	C	G	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.354;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.02;ReadPosRankSum=3.100;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:51,59:0.54:110
chr7	158536429	rs61362305	A	G	2262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.97;ReadPosRankSum=2.521;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:45,58:0.56:103
chr7	158536465	rs66795622	T	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:30,57:0.66:87
chr7	158552072	rs34089418	CAAG	C	861.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr7	158552331	rs896859	C	G	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-1.236;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:126,49:0.28:175
chr7	158552398	rs896860	C	T	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr7	158555706	rs844521	C	T	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	158557692	rs35421678	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr7	158560621	rs2602542	A	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr7	158566138	rs842447	T	C	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr7	158566217	rs842448	C	T	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr7	158586138	rs2602552	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr7	158590512	rs2788501	T	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.86;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr7	158590547	rs11404991	G	GA	1389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.798;QD=11.12;ReadPosRankSum=-1.560;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:30,95:0.76:125
chr7	158590740	rs13233513	A	T	1857.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:55,83:0.60:138
chr7	158591589	rs13222407	G	C	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:113,219:0.66:332
chr7	158591851	rs2709855	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr7	158621637	rs4599756	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr7	158649260	rs2657386	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr7	158649280	rs2788473	T	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr7	158649304	rs2788472	T	C	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr7	158649373	rs2657385	A	G	446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.525;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr7	158662182	rs842695	G	A	4286.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:93,196:0.68:289
chr7	158662250	rs712199	T	C	3805.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:81,181:0.69:262
chr7	158662511	rs3057377	T	TTTTAAAC	1422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.056;QD=19.76;ReadPosRankSum=-0.051;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:37,35:0.49:72
chr7	158662689	rs2308132	CTT	C	4887.73	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:75,123:0.62:198
chr7	158662698	rs842696	T	C	4791.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:66,118:0.64:184
chr7	158664074	rs145233696	TGAA	T	5311.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:72,135:0.65:207
chr7	158672476	rs2709859	C	G	6179.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr7	158672619	rs2788478	A	G	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:93,141:0.60:234
chr7	158694530	rs842703	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr7	158715219	rs2730238	A	G	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:53,19:0.26:72
chr7	158718793	rs2527188	A	G	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr7	158719084	rs2244789	C	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:80,46:0.37:126
chr7	158723014	rs2730241	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr7	158726798	rs34181207	T	TC	683.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chr7	158727015	rs35962377	C	CT	679.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.954;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:81,36:0.31:117
chr7	158727276	rs2657331	T	A	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:69,45:0.39:114
chr7	158727303	rs2657332	G	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,25:0.39:64
chr7	158734813	rs34634437	C	T	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:84,165:0.66:249
chr7	158738611	rs2527201	G	T	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr7	158824645	rs147214125	C	T	4253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=1.015;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:124,203:0.62:327
chr7	158827326	rs2071624	G	A	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:138,59:0.30:197
chr7	158827401	rs1017033	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr7	158827414	rs2071623	T	C	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-2.102;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:41,20:0.33:61
chr7	158829285	rs2730223	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr7	158835631	rs2540353	A	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr7	158851234	rs2098349	T	G	8547.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr7	158851804	rs2730257	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr7	158935029	.	CT	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=2.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.390;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr7	158935333	rs439204	G	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	182807	rs145388347	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=18.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	565219	rs76308159	C	G	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	565232	rs1669694	C	G	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	566417	rs13276545	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	566429	rs13255197	A	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	566432	rs13276566	C	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	566460	rs13276586	C	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	566619	rs68122960	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	607380	rs1669658	A	G	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	607566	rs62486240	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	607766	rs4735812	C	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr8	608018	rs6993769	C	T	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	608034	rs10090260	T	C	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	608279	rs1703925	A	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	609867	rs13262478	A	G	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	609879	rs12675313	AT	CC	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	618728	rs2271263	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	623156	rs6559065	G	C	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	623593	rs55783038	G	A	13402.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:2,505:1.00:507
chr8	947830	rs9650538	A	C	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	1496767	rs2906568	C	G	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	1496788	rs2906569	A	G	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	1514009	rs2301963	C	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	1616640	rs4565482	G	A	3444.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:327,188:0.37:515
chr8	1749388	rs7017381	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.461;QD=1.27;ReadPosRankSum=1.859;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:283,58:0.17:341
chr8	1749410	rs7003112	T	A	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.446;QD=1.16;ReadPosRankSum=1.859;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:287,55:0.16:342
chr8	1749513	rs12541297	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.856;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=0.218;QD=0.48;ReadPosRankSum=-0.423;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:92,13:0.12:105
chr8	1791433	rs11136431	C	T	3265.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	1791638	rs11136432	T	G	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	1791663	rs11136433	G	A	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=1.163;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	1791672	rs11136434	C	T	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	1791685	rs11136435	A	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	1806036	rs66620071	AGATC	A	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.282;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr8	1806045	rs28650492	G	T	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr8	1806229	rs4875950	A	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	1806319	.	TG	T	652	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=5;HapScore=1;MGOF=35;MMLQ=24;MQ=59.4;NF=0;NR=23;PP=652;QD=30.4796043422;SC=AGTCCCCAGGTGGGTCCCCAG;SbPval=1.0;Source=Platypus;TC=57;TCF=2;TCR=55;TR=23;WE=1806342;WS=1806309;set=Platypus	GT:AD:AF:DP	0/1:34,23:0.40:57
chr8	1806320	.	G	GGGTCCCCAGGTGGATCCCCAGGTGGGTCCCCAGGTGAGTCACCAGGTGAGTCCCCAGGTGAGTCCCCAGGT	2118.73	.	AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.39;QD=47.08;SOR=3.516;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	1806333	.	AG	GA	2623	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=35;MMLQ=28;MQ=59.3;NF=6;NR=34;PP=2623;QD=20;SC=TCCCCAGGTGAGTCCCCAGGT;SbPval=0.49;Source=Platypus;TC=50;TCF=7;TCR=43;TR=40;WE=1806342;WS=1806309;set=Platypus	GT:AD:AF:DP	1/0:10,40:0.80:50
chr8	1814570	.	CAT	C	687	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=26;MMLQ=23;MQ=60.24;NF=10;NR=23;PP=687;QD=21.1515151515;SC=TGTATAGTAACATATATATAT;SbPval=0.6;Source=Platypus;TC=35;TCF=11;TCR=24;TR=33;WE=1814579;WS=1814560;set=Platypus	GT:AD:AF:DP	0/1:2,33:0.94:35
chr8	1814588	rs67268874	GACAC	G,GAC	2028.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.55;MQRankSum=0.404;QD=28.18;ReadPosRankSum=-2.176;SOR=0.925;set=HC	GT:AD:AF:DP	1/2:2,23,47:0.32,0.65:72
chr8	1824596	rs4875944	G	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	1824947	.	C	G	233.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr8	1828178	rs2272711	C	G	5381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.95;ReadPosRankSum=0.053;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:106,254:0.71:360
chr8	1830794	rs2280886	G	A	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:59,144:0.71:203
chr8	1830928	rs4543586	A	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=27.59;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	1830956	rs34599746	TG	T	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	1833690	rs57467911	CTT	C	984.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr8	1833801	rs9657362	G	C	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:64,190:0.75:254
chr8	1833990	rs2294032	C	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=0.750;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:39,24:0.38:63
chr8	1857366	rs2294036	GT	AC	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;JOINED;set=Intersection	GT:AD:AF:DP	0/1:50,22:0.31:72
chr8	1870956	rs4242549	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr8	1876631	rs2272611	C	T	6605.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:120,297:0.71:417
chr8	1882252	rs3758021	A	T	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.912;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.58;ReadPosRankSum=-0.818;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr8	1882261	rs3758022	G	T	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.515;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.34;ReadPosRankSum=1.445;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr8	1900855	rs7832438	A	G	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	1901110	rs74808197	G	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	1901177	rs80299596	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	1905132	rs3735876	G	A	14964.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr8	1951107	.	C	T	307.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr8	2005414	rs7833424	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr8	2005675	rs3765207	CA	TG	4206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.204;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=0.866;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:289,125:0.30:414
chr8	2006054	rs3779862	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr8	2007116	rs7461903	A	G	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr8	2007230	rs6558591	A	C	5697.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:92,251:0.73:343
chr8	2020366	rs13251504	A	C	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.940;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.060;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr8	2020377	rs150521018	G	GATGCTCTCTGCCCTTCGGCCATGAAAGCCTCCATCGTTTC,GATGCTCTCTGCCCTTCGGCCCTGAAAGCCTCCATCGTTTC	3416.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.57;MQRankSum=0.000;QD=61.01;ReadPosRankSum=-0.712;SOR=0.971;set=HC	GT:AD:AF:DP	1/2:1,9,46:0.16,0.82:56
chr8	2021421	rs2272720	G	T	6084.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:53,264:0.83:317
chr8	2024207	rs7822836	A	C	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	2024405	rs3817698	G	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.875;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=0.002;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:176,43:0.20:219
chr8	2024437	rs3817699	C	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.374;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr8	2024446	rs3817700	CG	TA	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.522;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.507;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:76,16:0.17:92
chr8	2033600	.	G	GCTGTCGTGATCTCCGCGTGGCCCCTCA	1640	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=1;MGOF=9;MMLQ=23;MQ=61.33;NF=0;NR=24;PP=1640;QD=70.125;SC=GTGGCCCACCGCTGTCGTGAT;SbPval=1.0;Source=Platypus;TC=78;TCF=6;TCR=72;TR=24;WE=2033608;WS=2033590;set=Platypus	GT:AD:AF:DP	1/0:54,24:0.31:78
chr8	2033641	.	T	C	634	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=4;MGOF=35;MMLQ=23;MQ=59.93;NF=1;NR=16;PP=634;QD=39.339483091;SC=TCGTGATCTCTGCGTGGCCCC;SbPval=0.95;Source=Platypus;TC=29;TCF=5;TCR=24;TR=17;WE=2033661;WS=2033631;set=Platypus	GT:AD:AF:DP	1/0:12,17:0.59:29
chr8	2033653	.	C	T	419	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=5;HapScore=4;MGOF=35;MMLQ=28;MQ=57.51;NF=2;NR=8;PP=419;QD=45.3771212547;SC=CGTGGCCCCCCACTGTTGTGA;SbPval=0.48;Source=Platypus;TC=19;TCF=3;TCR=16;TR=10;WE=2033661;WS=2033631;set=Platypus	GT:AD:AF:DP	0/1:9,10:0.53:19
chr8	2040104	rs2235121	C	T	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr8	2040337	rs6420202	T	C	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	2040401	rs2235123	G	A	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	2040415	rs893877	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	2041894	rs35335787	G	A	5915.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:95,273:0.74:368
chr8	2042070	rs7828132	T	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	2044363	rs7834633	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.324;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.711;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:121,38:0.24:159
chr8	2044376	rs7815778	GG	AC	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=3.083;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.500;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr8	2044426	rs7820357	C	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr8	2046526	rs7817175	T	C	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.909;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr8	2046576	rs2294065	G	T	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=-0.647;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:141,42:0.23:183
chr8	2046700	rs2294066	C	T	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-1.077;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:199,55:0.22:254
chr8	2046880	rs2294067	G	C	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr8	2048640	rs3779838	C	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=2.664;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:204,52:0.20:256
chr8	2048811	rs4876227	A	C	16495.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr8	2048831	rs968381	A	G	1477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.442;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:321,101:0.24:422
chr8	2050596	rs2294072	A	G	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.569;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:112,27:0.19:139
chr8	2054012	rs12677887	C	T	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr8	2054066	rs17684416	A	G	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:95,36:0.27:131
chr8	2054171	rs3817705	C	T	5488.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:87,235:0.73:322
chr8	2054195	rs3817706	C	G	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr8	2054476	rs33927116	GA	G	710.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr8	2057298	rs2280897	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.149;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr8	2071002	rs6558607	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.291;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.732;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr8	2071261	rs71270475	A	AGAC	1865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.35;ReadPosRankSum=1.045;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:232,62:0.21:294
chr8	2071306	rs6998711	A	G	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.322;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-2.739;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:157,46:0.23:203
chr8	2071309	rs6998712	A	T	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-2.508;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:153,44:0.22:197
chr8	2071673	rs2280898	T	C	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.191;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.643;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr8	2112080	rs33945248	G	GTT	3410.73	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:55,159:0.74:214
chr8	2112130	rs1036689	G	A	4640.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:62,204:0.77:266
chr8	2148550	rs2618845	G	A	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	2148771	rs7008255	C	T	3921.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	2796277	rs585000	C	T	7978.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	2799864	.	TA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=-0.119;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr8	2799981	rs6997981	G	C	3343.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:64,147:0.70:211
chr8	2806920	rs5741961	G	GAAAGAAAAGA	4028.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	2808860	rs1513337	T	G	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:58,125:0.68:183
chr8	2813083	rs4875856	G	C	6093.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:97,269:0.73:366
chr8	2820745	rs667859	G	C	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.688;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:200,89:0.31:289
chr8	2830954	rs147251390	C	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr8	2832139	rs667595	C	G	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr8	2836102	rs615578	C	G	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	2909992	rs6558702	G	A	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	2910020	rs6558703	A	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	2910223	rs6420209	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	2910289	.	A	G	376	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=4;HapScore=2;MGOF=44;MMLQ=26;MQ=60.0;NF=5;NR=14;PP=376;QD=21.6195375025;SC=TGTGAATTATATTTCTTTTTT;SbPval=0.52;Source=Platypus;TC=20;TCF=5;TCR=15;TR=19;WE=2910297;WS=2910279;set=Platypus	GT:AD:AF:DP	1/1:1,19:0.95:20
chr8	2954348	rs3112	C	A	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:11,73:0.87:84
chr8	2964003	rs10503192	T	C	7787.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.357;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr8	2964206	rs4875742	T	C	5654.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:47,231:0.83:278
chr8	2965122	rs113534820	C	CTGTTTT	1625.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	2965209	rs1531351	A	G	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	2965244	rs3824271	T	C	5986.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr8	2966072	rs3802291	G	T	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.192;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	2966328	rs3802292	T	C	814.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr8	2967639	rs898512	G	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	3019592	rs11998250	A	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.004;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:108,21:0.16:129
chr8	3038525	rs259859	T	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:18,59:0.77:77
chr8	3046635	rs199581353	GTACA	G	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.823;QD=2.13;ReadPosRankSum=0.075;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:210,29:0.12:239
chr8	3059365	rs5888954	TA	T	1185.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	3072107	rs73183587	G	C	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.70;ReadPosRankSum=-1.093;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:222,36:0.14:258
chr8	3076667	rs28377033	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr8	3077005	rs17079639	T	C	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:4,41:0.91:45
chr8	3141555	rs10099968	A	G	801.79	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr8	3141586	rs4875508	T	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	3165356	rs76745052	C	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=1.040;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:680,135:0.17:815
chr8	3165471	rs10089504	C	A	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=1.895;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:135,19:0.12:154
chr8	3165478	rs10089513	C	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=1.922;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:120,18:0.13:138
chr8	3165777	rs10091831	G	A	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.741;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.901;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr8	3165814	rs1393843	A	C	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.11;ReadPosRankSum=-0.068;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr8	3200877	rs2161752	C	T	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=0.338;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:502,76:0.13:578
chr8	3201012	rs156075	C	T	10125.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	3201034	rs156076	G	T	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	3205378	rs190535	G	A	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr8	3205389	rs11136608	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:39,13:0.25:52
chr8	3205423	rs75454001	G	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.957;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr8	3205460	rs73173112	G	T	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.400;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:163,34:0.17:197
chr8	3216948	rs34858861	TA	T	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.175;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=10.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=0.503;SOR=2.247;set=HC	GT:AD:AF:DP	0/1:17,66:0.80:83
chr8	3224788	rs150085581	GGA	G	4946.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:41,151:0.79:192
chr8	3224799	rs371108751	G	A	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=8.368;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-1.587;QD=2.65;ReadPosRankSum=0.186;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:152,41:0.21:193
chr8	3226919	rs270096	C	T	9905.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr8	3253939	rs3802304	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.706;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:99,19:0.16:118
chr8	3253942	rs3802305	A	G	395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.787;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:96,17:0.15:113
chr8	3263500	rs10097933	T	C	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,53:0.79:67
chr8	3263758	rs12543118	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.112;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:216,50:0.19:266
chr8	3265590	rs10088378	C	T	24653.77	.	AC=2;AF=1.00;AN=2;DB;DP=932;set=Intersection	GT:AD:AF:DP	1/1:0,926:1.00:926
chr8	3265845	rs11775235	C	T	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.115;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=4.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.676;SOR=0.054;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr8	3266863	rs76650298	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:17,57:0.77:74
chr8	3266876	rs56284885	T	G	1881.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:21,75:0.78:96
chr8	3267161	rs3839873	A	AC	5242.73	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:36,154:0.81:190
chr8	3351094	rs7845810	G	A	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.696;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:185,38:0.17:223
chr8	3351116	rs10539369	GAGA	G	1018.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=2.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=0.664;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:263,44:0.14:307
chr8	3351147	rs17066296	G	A	8340.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:60,359:0.86:419
chr8	3351195	rs56109797	C	A	10425.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:97,454:0.82:551
chr8	3351264	rs9314495	G	A	7678.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:74,331:0.82:405
chr8	3351307	rs13260183	T	G	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.711;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-2.059;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:199,44:0.18:243
chr8	3351345	rs13251599	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=2.363;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:104,15:0.13:119
chr8	3351362	rs10503206	C	G	1850.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:15,73:0.83:88
chr8	3432692	.	TAAA	T,TA	1564.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.120;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.43;ReadPosRankSum=-0.384;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:11,29,33:0.40,0.45:73
chr8	3443517	rs73660318	C	A	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:17,68:0.80:85
chr8	3443570	rs73660319	A	G	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:38,175:0.82:213
chr8	3443799	rs370358989	G	GA	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.228;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:132,47:0.26:179
chr8	3443840	rs11463049	G	GA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.858;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr8	3474342	rs2291221	C	T	19609.77	.	AC=1;AF=0.500;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	0/1:106,829:0.89:935
chr8	3565900	rs12674750	C	T	8416.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:56,351:0.86:407
chr8	3566106	rs10105577	T	C	11602.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr8	3566161	rs10105599	T	G	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	3807319	rs2740867	C	G	1206.85	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:5,44:0.90:49
chr8	3807667	rs2627515	C	T	2500.79	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:11,102:0.90:113
chr8	3855302	rs1863475	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:11,58:0.84:69
chr8	3855369	rs11303985	GA	G	3343.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:28,162:0.85:190
chr8	4277636	rs112873242	C	CA	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	4494811	rs2617007	T	G	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr8	4495107	rs2617008	G	C	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.14;ReadPosRankSum=1.987;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:25,60:0.71:85
chr8	6264130	rs2305023	G	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	6264358	.	CCTCCCCCGCTGCCTGTCCCACCAAAACCCCCTGCTCCTGCTCT	C	439.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	6272185	rs2440437	G	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	6272399	rs2305022	G	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=26.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	6272477	rs2515415	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=40.62;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	6272481	rs2442545	C	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=44.68;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	6272532	rs2515417	T	A	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	6272540	rs3214738	TG	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=40.34;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	6272543	rs55687318	A	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.40;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6288879	rs2251956	A	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	6296550	rs2442513	G	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	6299532	rs2053618	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	6302183	rs930557	G	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	6302418	rs2515569	A	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	6303025	rs2584	G	A	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	6312880	rs2515575	C	T	85.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	6390027	rs2515481	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	6390079	rs2515482	G	A	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	6420534	rs3739391	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	6582485	rs2980686	A	C	391.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.176;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=-0.575;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr8	6588392	rs59149072	A	AT,ATT	424.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.294;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.36;MQRankSum=0.526;QD=12.14;ReadPosRankSum=0.782;SOR=1.919;set=HC	GT:AD:AF:DP	1/2:7,16,12:0.46,0.34:35
chr8	6669949	rs2553728	T	C	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	6673377	rs11338621	CA	C	7033.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	6686791	rs2741087	C	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	6735300	rs2293958	T	A	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	6735399	rs11362	C	T	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	6735423	rs1800972	C	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	6793540	rs736227	C	T	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	7343806	rs148956195	C	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.07;QD=22.77;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	7673308	rs78936136	A	G	60.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.38;MQRankSum=0.524;QD=12.16;ReadPosRankSum=1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	7686323	rs201085281	G	A	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=0.395;QD=2.34;ReadPosRankSum=0.625;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr8	7686397	rs146195936	T	C	81.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.11;MQRankSum=-0.524;QD=16.37;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	7718187	rs3177011	T	G	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr8	7718266	rs3860876	A	T	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.51;QD=27.00;SOR=1.554;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	7720995	rs199909847	T	C	593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.37;MQRankSum=-1.713;QD=12.63;ReadPosRankSum=-0.025;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr8	8186052	.	CTTTAT	C	1627.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	8186053	.	T	TGGAC	2423	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=3;HapScore=2;MGOF=19;MMLQ=26;MQ=60.0;NF=0;NR=15;PP=2423;QD=162.533333333;SC=CTTGTTTCCCTTTATTTATTT;SbPval=1.0;Source=Platypus;TC=25;TCF=0;TCR=25;TR=15;WE=8186066;WS=8186043;set=Platypus	GT:AD:AF:DP	1/1:10,15:0.60:25
chr8	8186058	.	T	TGGACCCAAA	1627.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	8186101	rs143704562	T	TTTTCTA	444.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	8197274	rs11325094	GA	G	31.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.29;ReadPosRankSum=-0.842;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr8	8643387	rs10903311	G	A	225.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	8643582	rs2271340	C	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	8643725	rs2271341	T	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	8655023	rs3748144	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	8747537	rs399123	T	C	2412.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	8747894	rs429433	A	G	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	8860620	rs2288672	T	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	8887542	rs140242735	TAAC	T	3922.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	8905786	rs11433078	G	GT	248.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	8905926	rs2921379	A	G	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	8998262	rs434238	CT	TG	319.78	.	AC=2;AF=1.00;AN=2;DB;DP=7;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	8999187	rs330924	G	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	9537635	rs12114182	G	A	176.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	9563797	rs11343041	CT	C	248.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr8	9564437	rs7006985	A	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	9564600	rs12542457	T	C	74.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	9577794	rs72301704	A	AT	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	9577804	rs5025210	C	A	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	9577940	rs6601360	T	C	2863.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	9593081	rs4841208	A	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	9610302	rs201737154	C	CA	67.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	9629810	rs117475636	A	G	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	9912220	rs114746252	C	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	10102863	rs4841293	A	G	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	10210990	rs111889058	ACCGGAGGC	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	10211175	rs6601444	C	T	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	10285810	rs3750314	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	10285825	rs10903326	T	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	10383226	rs4521726	C	G	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	10388749	rs4841366	G	A	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	10390452	rs4406360	C	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	10396054	rs6601483	A	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	10464307	rs12542104	G	A	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	10464755	rs55642448	C	T	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	10464885	rs56382513	T	C	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,116:0.98:118
chr8	10465012	rs75797924	G	A	7674.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.041;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=-0.734;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:1,307:1.00:308
chr8	10465748	rs11783478	T	C	13028.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr8	10465771	rs11785822	G	T	14904.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr8	10467160	rs62490855	G	A	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	10467207	rs4840498	C	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	10467589	rs9657518	T	C	17632.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.939;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.42;ReadPosRankSum=9.984;SOR=0.544;set=HC	GT:AD:AF:DP	1/1:42,417:0.91:459
chr8	10467604	rs74366179	C	A	17921.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:42,429:0.91:471
chr8	10468172	rs4840502	G	A	4598.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	10469817	rs6996950	G	A	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	10470915	rs11773913	A	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	10470941	rs4840503	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	10530037	rs11250057	G	A	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	10530218	rs11250058	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	10532355	rs4841419	T	C	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	10532401	rs4840505	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	10692329	rs199784807	C	T	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	11052754	.	A	G	719.77	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	11142389	rs3021505	C	CG	1377.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr8	11142625	rs2272594	T	C	1224.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	11152957	rs2245937	C	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	11155613	rs2409754	A	G	236.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	11157371	rs2736387	A	C	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	11157460	rs3808513	T	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	11162496	rs2164272	A	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	11162602	rs2256016	C	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.30;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	11162609	rs2060465	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	11164012	rs17797443	T	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	11174484	rs11784572	G	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	11177410	rs2293855	G	A	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.50;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	11177447	rs2293856	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	11204165	rs2572387	C	T	1588.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	11204184	rs11784458	G	A	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	11204755	rs11777746	T	C	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr8	11292542	rs2280803	C	T	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr8	11295511	rs2001463	A	G	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	11296091	rs1057750	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	11301753	rs3021513	A	C	2002.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	11400628	rs12386974	C	G	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	11403769	rs2244931	C	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	11405374	rs73195285	T	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	11405437	rs6994605	G	A	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	11406593	rs3816668	T	C	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	11410987	rs936550	C	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	11415572	rs4841557	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	11415597	rs4841558	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	11416122	rs2467518	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	11416171	rs7011778	T	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	11416428	rs6988443	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.453;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	11416635	rs11785333	G	A	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	11416643	rs11785335	G	A	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	11417493	rs10098664	T	C	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	11418766	rs62490888	G	A	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	11422170	rs7840433	A	G	3928.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	11606312	rs3735819	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	11612698	rs804280	C	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	11618998	rs804285	G	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	11619261	rs2740431	T	A	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	11619397	rs36018280	G	A	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	11629119	rs804269	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	11629241	rs804267	G	A	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	11640611	rs8191639	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	11660051	rs2645429	A	G	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	11660916	rs2252567	C	T	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	11665959	rs1032577	C	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	11666218	rs71711801	GTCCCAC	G	18987.73	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr8	11666451	rs1616534	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:2,65:0.97:67
chr8	11683653	rs904011	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	11687938	rs1293313	G	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	11689228	rs2409836	T	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	11695872	rs10903343	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	11702542	rs8898	T	C	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	11831948	rs7461062	T	C	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	11832079	rs10108075	A	G	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	11853596	rs11250186	A	G	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	12517016	.	TCTCTGGCGCC	T	143	.	AC=2;AF=1.00;AN=2;DP=3;MQ=63.51;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	12517038	.	T	G	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	12517042	.	C	A	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	12517049	.	G	C	152.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.65;QD=38.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	12584659	rs10095845	C	T	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	12592956	rs13251315	C	A	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	12593045	rs13272425	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	12598608	rs4831354	C	T	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	12600622	rs7837242	C	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	12878637	rs528255	A	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	12878677	rs622106	T	C	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	12878807	rs3739310	T	G	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	12878830	rs3739309	C	T	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	12879062	rs503550	T	C	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	12879099	rs502882	G	A	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,120:0.99:121
chr8	12879334	rs608909	T	C	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	12879539	rs608052	A	G	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	12879600	rs498852	C	T	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	12888743	rs13281744	A	G	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	12888908	rs7826836	T	G	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	12888997	rs573652	T	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	12943691	rs621554	C	T	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	12948951	rs609020	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	12950110	rs7829535	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	12952174	rs5889417	CA	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr8	12952230	rs658948	C	T	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=27.33;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	12957475	rs532841	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	12960281	rs2280335	T	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	12972946	rs35858677	C	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	12972972	rs145012061	A	AT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	12972981	rs56332333	A	T	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	12973078	rs34462909	T	C	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	12990422	rs10107321	A	G	2697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.614;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:457,179:0.28:636
chr8	12990518	rs13275331	T	A	2058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.605;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.386;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:368,129:0.26:497
chr8	13072066	rs34727279	C	CT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=1.076;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr8	13072177	rs3739300	C	T	2000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-0.792;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:40,88:0.69:128
chr8	13258927	rs2306484	G	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.537;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr8	13258936	rs289583	T	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	13356424	rs3736135	G	T	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	13356802	rs3816747	G	A	11483.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr8	13356818	rs11203494	TT	CG	19175.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr8	13357587	rs1383942	G	A	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	13424583	rs13273355	C	T	6612.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr8	13425353	rs11203497	T	A	7518.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	13959749	rs1973167	A	G	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	13965581	rs11336839	AT	A	632.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	14094993	rs35279380	A	AAAC	2130.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:3,78:0.96:81
chr8	14095199	rs13269000	T	C	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	14095250	rs1478030	A	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	15590866	rs2111752	T	G	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	15978063	rs4338104	C	T	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	15978125	.	TAA	T	60.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.01;ReadPosRankSum=0.524;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,4:0.80:5
chr8	16859398	rs10448135	C	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	16884721	.	A	ACCCC	206	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=11;HapScore=2;MGOF=37;MMLQ=23;MQ=52.27;NF=0;NR=4;PP=206;QD=53.75;SC=GATTTCGGCGACCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=16884729;WS=16884711;set=Platypus	GT:AD:AF:DP	1/1:2,4:0.67:6
chr8	16935234	rs10098337	G	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	16942837	rs2285264	C	T	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	16942849	rs2285265	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	17042129	rs75130109	C	CCT	654.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	17067574	rs73198534	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	17074640	rs3213600	C	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	17092164	rs2959606	G	T	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	17100357	rs2904701	C	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	17100456	.	G	GAA	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-0.131;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	17125768	rs11555738	T	C	66.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17142065	rs2285269	C	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	17143830	rs3793427	G	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	17144020	rs3793428	C	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	17157259	rs6992513	G	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	17159812	rs6587028	G	A	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	17166765	rs1548353	A	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17166866	rs62498845	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	17230644	rs7388581	G	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	17270763	rs2073694	G	C	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	17270787	rs67972978	A	G	6729.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	17270837	rs72607374	G	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	17401364	rs368416506	CCTT	C	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	17401878	rs2517252	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	17406183	rs737039	A	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	17406367	rs11373918	GT	G	582.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17421279	rs2588173	T	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	17486282	rs2229084	T	C	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	17491467	rs35456129	G	A	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17491730	rs7006613	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	17541784	rs2898459	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	17573107	rs2937891	G	A	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17611886	rs2979788	G	A	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	17612456	rs11203910	C	T	5702.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:2,211:0.99:213
chr8	17612694	rs73206291	C	G	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	17612875	rs3739407	A	G	3933.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr8	17726019	rs10112643	A	G	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	17732084	rs2517294	GC	CA	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	17739538	rs3739406	T	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	17742929	rs2073562	A	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	17743020	rs484373	G	A	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	17743256	rs369898	G	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	17753657	rs500282	G	A	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	17753873	rs3896063	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	17796382	rs412750	AC	GT	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	17797409	rs2285303	A	G	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17804665	rs28655174	G	A	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	17814680	rs11777618	G	C	166.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.85;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17814915	rs208753	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	17819572	rs3780103	C	T	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr8	17819761	rs208060	A	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	17827260	rs3214087	A	AC	2615.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	17829756	rs34990698	C	CAA	131	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17851248	rs429633	C	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	17868029	rs2467556	C	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	17868245	rs2467555	C	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	17871598	rs13266287	T	A	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	17871619	rs28551649	A	C	177.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17885091	rs3213605	T	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	17891178	rs6586680	C	T	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	17916224	rs420610	A	C	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	17916553	rs7465164	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	17916598	rs33985304	CT	C	660.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	17918934	rs10103355	A	G	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	17920807	rs7824644	A	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	17920820	rs7824650	A	T	1230.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	17921921	rs2073574	T	C	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	17924609	.	T	TGCACCTGTGCTGTATATCTAAGACATACA	366.74	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=61.12;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	17928711	rs11785746	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	17928753	rs113896339	G	GAAATA	1503.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	18074536	rs7387461	G	A	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	18077007	rs10106882	G	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	18257795	rs1041983	C	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	18258103	rs1799930	G	A	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	18258316	rs1208	G	A	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	18413875	rs2260920	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	18413893	rs112511528	C	CAAA	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.12;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	18415081	rs2634454	G	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	18432578	rs2248559	C	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	18432924	rs1546002	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	18457957	rs2932001	A	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.03;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	18490356	rs2306824	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	18620703	rs2410595	G	A	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	18656601	rs2248631	G	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	18656888	rs3214999	AG	A	1282.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:4,65:0.94:69
chr8	18658750	rs1386692	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	18658929	rs1386691	C	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	18659019	rs1386690	C	T	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	18659765	rs2638646	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	18659780	rs2632848	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	18659882	rs3837206	GA	G	642.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	18659928	rs2632847	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	18660007	rs2638647	A	G	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	18661932	rs59596734	TA	T	243.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=16.25;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	18662204	rs73666724	C	A	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	18793697	rs10092681	T	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	19221700	rs34608771	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	19230955	rs143003649	G	GTA	104.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.49;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr8	19277735	rs7016592	A	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	19277817	rs6999786	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	19297583	rs13278459	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	19315034	rs10888163	G	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	19316086	rs12155539	G	A	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	19456473	rs4244454	C	T	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	19681647	rs2410612	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	19682545	rs3816246	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	19682592	rs7018076	A	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	19687862	rs73206572	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	19689633	rs4434638	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	19689821	rs4615593	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	19813676	rs270	C	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	20003431	rs35711001	AT	A	82.94	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr8	20005439	rs10102779	T	G	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	20005716	rs903997	G	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	20007100	rs60330468	CCT	C	1111.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;QD=39.70;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	20007125	rs10216526	C	G	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr8	20028474	rs7841346	C	A	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	20028553	rs7828538	T	C	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	20035809	rs1532446	G	A	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	20036043	rs1908809	C	A	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	20036095	rs2279708	G	A	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	20036521	rs1390937	A	G	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	20036713	rs1390938	A	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	20036827	rs2270637	C	G	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	20066877	rs78680143	A	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	20068163	rs7460146	T	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	20069789	rs10156354	G	C	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	20107143	rs904003	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	21767493	.	A	AT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.979;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=2.747;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.756;QD=2.63;ReadPosRankSum=-0.815;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr8	21827880	rs370595398	AAC	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.517;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr8	21842023	rs1872220	TT	GA	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	21890581	rs1947985	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	21891939	rs10089142	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	21891968	rs4871915	C	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	21895146	rs11992609	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	21905772	rs3176304	G	C	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	21924297	rs9657287	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	21924743	rs11135821	G	A	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	21924778	rs11135822	T	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	21924944	rs11135823	A	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	21925214	rs6997244	C	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	21927137	rs12680100	G	A	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	21927211	rs12681799	C	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	21927460	rs7386762	C	G	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	21930007	rs3824334	G	A	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	21930068	rs3824336	A	G	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	21931141	.	CAAAAAAAAA	C,CAAAA	1148.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.81;MQRankSum=0.387;QD=35.90;ReadPosRankSum=1.734;SOR=0.465;set=HC	GT:AD:AF:DP	1/2:1,7,24:0.22,0.75:32
chr8	21931170	rs199820139	AAAAAAAAAAGAG	A	2771.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.41;QD=40.76;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	21937667	rs6557781	T	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr8	21937870	rs7835670	G	A	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr8	21939435	rs6557782	C	T	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	21947214	rs73223800	A	C	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	21955552	rs1973254	T	C	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	21956108	rs35497596	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	21958333	rs1552283	T	C	9412.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr8	21958831	rs1968870	C	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	21958843	rs71544853	C	CTCTT	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	21959191	rs6557810	A	G	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	21959877	rs7812435	T	G	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	21964802	rs1552286	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	21965113	rs3739435	T	C	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	21966700	rs57316099	GC	G	1689.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	21966707	rs58343576	CG	C	1689.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	21978072	rs11135859	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	21984650	rs12675745	A	G	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	22020066	rs13248346	T	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	22020294	rs2070684	C	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	22021933	rs1126931	C	T	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	22066855	rs4463424	C	T	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	22079355	rs4872422	A	G	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	22081708	rs4075536	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	22084653	rs4871975	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	22085260	rs10100426	T	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	22104691	rs34392777	G	T	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	22105502	rs1126677	T	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	22147333	rs4872463	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	22162271	rs75282394	T	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	22163331	rs12543697	C	T	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	22167286	rs4486204	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	22172702	rs4397403	C	T	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	22211756	rs66554545	T	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	22262098	rs896375	A	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	22262142	rs896376	G	A	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	22262183	rs896377	G	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	22262228	rs111662782	AGCTGCT	A	4867.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	22262321	rs896378	T	C	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	22262379	rs33999442	C	T	4758.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	22262418	rs2293144	A	G	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	22388857	rs17733355	G	A	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	22396781	rs5890041	TC	T	138.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22421395	rs2469762	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	22422923	rs960509	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	22424489	rs11779261	A	G	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	22424749	rs56177854	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	22428658	rs2449331	T	C	10534.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr8	22430651	rs57425551	C	CA	75.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	22430766	rs10088686	C	A	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	22432377	rs710098	C	A	7498.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:4,316:0.99:320
chr8	22442287	rs4872003	A	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	22442661	rs2294047	A	G	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	22457107	.	T	C	63	.	AC=2;AF=1.00;AN=2;BRF=0.6;FR=1.0000;HP=3;HapScore=2;MGOF=75;MMLQ=23;MQ=60.0;NF=1;NR=1;PP=63;QD=48.8856062736;SC=CCAGCCCCGCTGGGAGTGTCT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=22457115;WS=22457097;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	22477078	.	G	GGCAGTCC	3696.73	.	AC=2;AF=1.00;AN=2;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	22482851	rs900268	A	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	22487388	rs6558170	C	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	22487422	rs6558171	T	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	22491880	rs17088488	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	22491980	rs17746902	G	T	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=25.77;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	22492052	rs6558172	G	A	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	22492079	rs11383600	T	TA	4852.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	22492129	rs6558174	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	22492143	rs7838146	C	T	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	22548340	.	G	C	1925.77	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	22785013	rs1553778	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	22863004	rs2430811	A	G	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	22863017	rs2466179	G	T	2785.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	22863191	rs2430812	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	22864622	rs2466178	T	C	9059.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr8	22865320	rs2430815	T	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	22881852	rs6557609	T	C	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	22885109	rs1105944	A	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	22886020	rs13265018	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	22886130	rs2293399	A	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	22887013	rs6420148	C	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	22888407	rs10866818	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	22926498	rs11135695	G	A	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	22960704	rs6557616	G	C	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr8	22969091	rs10111172	T	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	22974325	.	G	A	654	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=3;HapScore=1;MGOF=6;MMLQ=17;MQ=43.92;NF=18;NR=23;PP=654;QD=16.799297867;SC=ACACCAGCCCGGGGACTCCTG;SbPval=0.52;Source=Platypus;TC=44;TCF=19;TCR=25;TR=41;WE=22974333;WS=22974315;set=Platypus	GT:AD:AF:DP	1/1:3,41:0.93:44
chr8	22974450	.	T	C	1296	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=57.83;NF=43;NR=35;PP=1296;QD=17.0611693916;SC=GAGACAATGATCACCAGCCCG;SbPval=0.59;Source=Platypus;TC=79;TCF=43;TCR=36;TR=78;WE=22974458;WS=22974440;set=Platypus	GT:AD:AF:DP	1/1:1,78:0.99:79
chr8	22989735	rs5890091	C	CA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.48;ReadPosRankSum=2.323;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr8	22990193	rs56285426	TTG	T	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=-0.596;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chr8	23054779	rs3824218	T	C	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr8	23059265	rs11294851	TC	T	2233.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	23059280	rs4872078	G	T	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	23059324	rs20575	C	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	23060256	rs17620	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	23114203	rs368357831	G	GTTT	215.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:2,7:0.78:9
chr8	23116103	rs56160478	G	A	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	23116431	rs4872098	C	T	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	23145320	rs11777755	A	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	23146095	rs11546682	A	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	23147564	rs3808536	G	A	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	23148003	rs4469460	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	23148930	rs2272762	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	23148940	rs2272761	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.71;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	23148978	rs2272760	G	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	23149089	rs2272759	A	G	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	23150671	rs11135720	A	G	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	23150772	rs72237352	CTGCT	C	2077.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	23150878	rs13530	T	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	23151000	rs3860836	A	G	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	23152334	rs15946	A	G	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	23152756	rs11783381	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	23153022	rs1002792	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	23156281	rs62503960	C	T	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	23160778	rs3765215	C	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	23198732	rs11781891	C	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	23225559	rs1063577	G	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	23291835	rs1142283	T	C	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	23292044	rs139348326	GCA	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.754;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr8	23294392	rs2272643	C	T	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	23294412	rs2272642	A	G	2718.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	23307253	rs2293936	A	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	23423758	rs10992	G	A	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr8	23429448	rs59804560	A	AT	163.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=-0.000;QD=14.89;ReadPosRankSum=-1.465;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr8	23431045	rs1810193	T	C	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	23432326	rs1398232	T	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.48;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	23432332	rs8534	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.99;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	23540417	rs11781886	C	T	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	23702220	rs2936	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	23702587	rs1992053	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	23702603	rs11135775	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	24187399	rs11994377	T	A	279.82	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr8	24193264	rs4872222	T	C	1342.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	24208649	rs10092862	C	T	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	24208934	rs5012230	C	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	24211278	rs7815643	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	24211331	rs7814768	G	A	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	24211884	rs10694022	A	ATGTC	1311.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	24211993	rs10610134	ACTAT	A	2033.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	24247556	rs4872231	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	24256470	rs2291577	C	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	24257137	rs17799264	T	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	24261526	rs3765124	A	G	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	24321377	rs181609484	G	C	4588.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	24333601	rs10100176	G	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	24339679	rs13255694	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	24339896	rs11348969	GA	G	280.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	24348221	rs1492401	T	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	24348241	rs2242354	A	G	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	24356818	rs13259668	A	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	24357917	rs4242407	G	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	24358219	rs17739399	A	G	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	24359068	rs13277171	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	24359125	rs3071035	ATT	A	631.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=25.27;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr8	24363792	rs6982442	G	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	24365157	rs34338646	TCA	T	1073.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	24365181	rs11307556	AT	A	135.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=-1.380;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr8	24366020	rs2290150	T	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	24774683	rs196864	C	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	24775303	.	GTCACCAGTGGAAGAGAAAGGCAAGTCTCCTGTGCCGAAATCACCAGTGGAAGAGAAAGGCAAGTCTCCTGTGTCAAAATCACCAGTGGAAGAGAAAGCCAAATCTCCTGTGCCAAAA	G	330.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	24811064	rs11300136	AG	A	1411.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	25132735	rs4478580	T	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	25156296	rs2956656	T	G	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	25158026	rs2709639	G	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	25158072	rs5890219	AT	A	2032.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	25159665	rs868335	T	C	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	25160084	rs2709638	CA	TG	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	25166446	.	AGTCCAGTGCCAGAGCTGGGAGGGACTCTGCT	A	1616.73	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	25181356	rs2666174	C	T	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	25190308	rs73216275	A	G	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	25200148	rs10110351	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	25202915	rs2468901	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	25203022	rs2468902	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	25209144	rs7012335	A	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	25227255	rs2659578	C	T	150.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	25234858	rs2659585	A	G	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	25240100	rs7837477	G	A	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	25246481	rs2709602	G	A	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	25257531	rs3763520	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	25267622	rs2709618	A	G	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	25280666	rs2709608	A	C	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	25287556	rs965130	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	25301759	rs57257880	C	CT	161.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=0.000;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr8	25317691	rs6987936	A	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	25323777	rs10108752	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	25364331	rs4872318	G	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	25365278	rs8537	G	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	25708267	rs10866845	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	25890478	rs1872497	G	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	25890549	rs7826952	T	C	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	25898316	rs12544694	C	T	276.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	25902171	rs11135911	CG	C	321.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	25902501	rs7007677	G	A	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	26441275	rs415524	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.53;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	26441477	rs11786691	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	26481771	rs327222	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	26483998	rs71553811	AACACACACACACAC	A	1381.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	26484613	rs17322275	G	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	26614706	rs11309325	CT	C	2161.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	26623384	rs3802241	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	26623477	rs34651910	C	CTTGTGAAAAGAAA	2073.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	26628028	rs1048101	A	G	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	26636925	rs6989854	T	C	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	26636981	rs58623861	G	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	26716472	rs536401	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	26943929	rs1814489	T	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	26944600	rs2028908	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	27094548	rs10217008	A	G	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	27094615	rs79091127	G	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	27099879	rs3739212	C	T	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	27101204	rs4733040	T	A	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.07;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	27101204	.	TTA	ATC	959	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=4;HapScore=1;MGOF=3;MMLQ=21;MQ=60.0;NF=21;NR=11;PP=959;QD=31.6396210894;SC=CCTACGCCCCTTAACACATGG;SbPval=0.48;Source=Platypus;TC=34;TCF=23;TCR=11;TR=32;WE=27101214;WS=27101194;set=Platypus	GT:AD:AF:DP	1/1:2,32:0.94:34
chr8	27101206	rs7830662	A	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	27147716	rs12386801	A	C	975.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.229;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.39;ReadPosRankSum=1.069;SOR=1.807;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr8	27204598	rs4534095	A	G	2560.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	27204663	rs2874826	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	27204857	rs4629818	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	27255080	rs1128433	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	27255128	rs1045510	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	27255146	rs1045511	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	27255263	rs1045512	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	27255325	rs2241650	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27255368	rs11267627	AGCAGCTCTCCTGCAGCCTC	A	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27279705	rs2241652	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	27288314	rs56373327	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	27291557	rs919493	T	C	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	27292287	rs1896959	A	G	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27294532	rs2163176	C	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	27294823	rs6996922	T	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	27295109	rs2288617	A	G	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	27297696	rs2241657	T	C	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	27303126	rs4733064	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	27308585	rs751019	A	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	27310546	rs3735758	A	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	27311703	rs1879184	T	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	27315726	rs1879183	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27315876	rs1879182	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	27315900	rs1879181	A	G	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	27321597	rs3735757	G	C	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	27328354	rs2472554	G	C	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	27369334	rs7816586	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	27436236	rs140683899	GTTTGT	G	776.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=40.88;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27456253	rs2279590	T	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	27462008	rs28541694	C	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	27462481	rs7982	A	G	2247.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	27467821	rs2070926	C	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	27598172	rs7842672	A	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	27609830	rs4732744	A	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	27614138	rs2280884	A	G	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	27630152	rs7842666	G	A	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	27641609	rs1824449	G	A	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	27641706	rs145374594	TATTG	T	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	27645704	rs6558014	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	27649426	rs11402833	G	GT	859.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27661066	rs144484866	T	TAC	119.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=0.366;QD=17.11;ReadPosRankSum=0.876;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr8	27685663	rs55973425	C	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	27729713	rs11776426	G	A	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	27743401	rs2726928	T	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	27743535	rs2685381	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	27762537	rs939706	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	27764576	rs7826640	G	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	27764627	rs2726987	T	C	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	27767066	rs17058204	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	27767231	rs17058207	C	G	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.55;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	27767276	rs58646328	C	A	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	27779545	rs10103504	C	T	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	27779811	rs4732613	C	T	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	27779880	rs61455593	T	TA	1015.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	27779885	rs59195507	T	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	27880826	rs921597	C	T	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	27886700	rs9644134	A	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	27886903	rs9314357	C	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	27887047	rs11786995	G	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	27887813	rs7817068	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	27915830	rs4336563	T	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	27918057	rs7817227	T	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	27925204	rs4732620	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	27927849	rs6998705	C	G	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	28206275	rs1046511	G	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	28210613	rs6558057	G	C	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	28341058	rs7843764	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	28341110	rs11787273	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	28362792	rs7833751	T	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	28384712	rs2241802	A	G	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	28588904	rs2071340	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	28633098	rs241203	A	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	28633124	rs7462400	T	C	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	28638223	rs241196	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	28645271	rs241187	C	T	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	28651297	.	A	AC	50.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.704;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr8	28651298	rs2665911	A	C	463.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=0.722;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:9,29:0.76:38
chr8	28651299	.	A	C	56.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.687;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr8	28651300	rs2665912	A	C	463.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.534;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:9,30:0.77:39
chr8	28692783	rs28522383	C	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	28707570	rs4732887	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	28979949	rs4732905	C	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr8	28984042	rs3793435	T	C	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	28984572	rs3763566	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	28991405	rs3750265	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	29005093	rs6986672	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	29005128	rs13263819	A	G	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	29023421	.	T	TTCGATTGTAGATCGAAGTACC	406.74	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.67;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	29033422	rs6558098	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	29053761	rs10547393	TA	T	869.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.663;QD=11.60;ReadPosRankSum=0.556;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:10,65:0.87:75
chr8	29107388	rs2954794	G	A	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	29927300	rs6468093	C	G	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	29927321	rs6468094	A	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	29931375	rs986636	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	29940271	rs13279112	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	29963198	rs58694679	A	AT	389.86	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:5,23:0.82:28
chr8	29995918	rs117368497	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	29996007	rs148503905	C	CTGTA	1697.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	29996158	rs4733141	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	29996256	rs7813902	T	C	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	30001915	rs12546113	T	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	30021509	rs138117127	C	T	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	30040534	rs56302321	T	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	30210274	rs4349946	T	C	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	30503194	rs4733196	T	C	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	30537223	rs10715710	CT	C	154.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.809;QD=7.38;ReadPosRankSum=0.461;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	30539623	rs2250192	T	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	30541915	rs1465477	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	30546636	rs2551715	T	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	30567423	.	TA	T	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=2.150;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=3.726;QD=3.58;ReadPosRankSum=-2.653;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:48,38:0.44:86
chr8	30601610	rs3217273	TC	T	309.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	30601805	rs2278092	C	T	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	30608773	rs1991111	A	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.22;QD=25.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	30608976	rs2911690	C	T	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	30609061	rs2911689	T	G	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.94;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	30609078	rs2911688	A	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	30620840	rs11388922	G	GT	1546.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	30620964	rs2956010	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	30623996	rs2956016	T	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	30655363	rs1116003	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	30670163	rs1131305	G	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	30670390	rs4733201	G	T	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	30695226	rs2720593	C	T	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr8	30702991	rs1362912	A	G	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	30703431	rs323346	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	30706224	rs323347	A	G	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	30725122	rs323368	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	30732494	rs929917	C	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	30854033	rs2725371	A	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	30916085	rs2737316	T	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	30922346	rs2725346	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	30924557	rs1800389	C	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	30933816	.	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-2.275;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr8	30933859	rs4733221	C	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	30941317	rs2737325	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.63;QD=26.04;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	30954244	.	G	GT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.441;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr8	30958353	rs3087419	CT	C	663.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	30958561	rs11574274	C	T	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	30973957	rs1800392	G	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	30977717	rs2725352	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	30990110	rs2252480	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	30999123	rs2737335	G	A	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	30999280	rs1801195	G	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	30999394	rs2725363	A	G	95.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	31000012	rs2725364	T	C	120.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	31000243	rs2725365	T	C	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	31005017	rs3087415	T	TC	3243.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	32453358	rs3924999	G	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	32611970	rs74942016	G	T	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	33311091	rs7009689	T	C	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	33313329	rs2732315	G	A	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	33313421	rs11337905	GA	G	476.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.60;MQRankSum=1.042;QD=12.22;ReadPosRankSum=-0.589;SOR=0.631;set=HC	GT:AD:AF:DP	1/1:5,34:0.87:39
chr8	33347907	rs2732274	T	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	33354873	rs11987085	C	A	165.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;QD=20.72;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	33355886	rs2676419	G	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	33356074	rs6468171	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	33356561	rs34242409	AG	A	171.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	33369944	rs2304748	T	C	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	33369994	rs3098657	A	G	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	33370985	rs2581896	A	G	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	33371146	rs2581897	T	G	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	33371150	rs2581898	A	G	6659.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	33371199	rs2581899	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	33451026	rs2044162	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	35425870	rs2589340	T	A	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	35581741	.	G	C	1386.77	.	AC=1;AF=0.500;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr8	35581858	.	G	A	4417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=0.419;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.55;ReadPosRankSum=0.568;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:117,209:0.64:326
chr8	36661686	rs12543523	A	C	1383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=460;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.549;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:352,107:0.23:459
chr8	36662680	rs16885430	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr8	36664713	rs1079679	A	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr8	36666183	rs1111121	G	A	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=-1.343;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:192,56:0.23:248
chr8	36675017	.	CAAAAA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.000;QD=5.87;ReadPosRankSum=0.607;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr8	36691189	rs10089594	C	T	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=1.242;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:324,115:0.26:439
chr8	36767024	rs28608091	T	C	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.505;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.412;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:57,23:0.29:80
chr8	36767085	rs62490754	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr8	36776267	rs10108041	T	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	36779848	rs60216672	GA	G	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.857;QD=9.29;ReadPosRankSum=-0.363;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr8	36780209	rs1010669	A	G	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	36786396	rs10089755	C	T	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	36788391	rs17400313	A	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr8	36788479	rs16885577	A	G	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:42,119:0.74:161
chr8	36788693	rs6986249	T	C	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	36790339	rs2275960	G	A	5164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.22;ReadPosRankSum=-0.977;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:78,222:0.74:300
chr8	37611414	.	CT	C	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.841;QD=0.70;ReadPosRankSum=-0.078;SOR=0.429;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr8	37620076	rs6468438	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	37686749	rs6468442	A	G	9212.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr8	37693302	rs10101560	T	C	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	37699195	rs4976898	C	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:131,54:0.29:185
chr8	37699516	rs7010546	C	T	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-1.175;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:195,48:0.20:243
chr8	37706057	rs11777510	A	T	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.787;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.039;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:214,74:0.26:288
chr8	37706267	rs12541064	C	A	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:93,45:0.33:138
chr8	37728017	rs7817179	A	G	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	37728017	.	ATT	GTG	2075	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=21;NR=33;PP=2075;QD=39.4160717567;SC=CTTGGTGGCCATTGCATTCAT;SbPval=0.54;Source=Platypus;TC=57;TCF=22;TCR=35;TR=54;WE=37728027;WS=37728007;set=Platypus	GT:AD:AF:DP	1/1:3,54:0.95:57
chr8	37728019	rs7820872	T	G	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	37730368	rs12541651	G	A	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	37730456	rs7341564	G	T	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=1.090;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr8	37888017	rs3750243	C	G	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=20.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=1.156;SOR=3.586;set=HC	GT:AD:AF:DP	0/1:59,21:0.26:80
chr8	37964024	rs112972804	C	CT	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.058;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.953;QD=1.86;ReadPosRankSum=-0.059;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr8	37985897	rs2843740	A	G	7435.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr8	37986561	rs2517394	G	C	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	38003787	rs2720050	T	C	18902.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:1,716:1.00:717
chr8	38005835	rs2229620	T	C	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	38006330	rs35520501	TC	T	7876.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	38028726	rs2843739	T	C	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	38029708	rs2843738	G	C	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	38033989	rs2270376	G	C	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	38095662	rs2306899	C	T	7150.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr8	38103239	rs7006757	T	A	7276.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr8	38110215	rs2898674	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr8	38125067	rs111992593	C	CCTTA	411.74	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	38126359	rs1149	G	C	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	38133793	rs1488935	G	A	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	38147091	rs77732910	T	C	1106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=0.605;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:174,70:0.29:244
chr8	38153571	rs55703821	A	T	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	38173375	rs16887325	G	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.46;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	38178767	rs2234555	C	A	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	38245598	rs35044708	CT	C	2158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.794;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.204;QD=8.21;ReadPosRankSum=-0.897;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:78,185:0.70:263
chr8	38254696	.	C	CT	144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=3.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.027;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr8	38262233	rs7001340	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr8	38281658	rs3925	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr8	38286811	rs2304000	C	G	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr8	38369831	rs4733951	A	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,72:0.71:102
chr8	38370200	rs146268311	GAGACACAGAC	G	647.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	38385795	rs2445020	T	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:36,72:0.67:108
chr8	38385834	rs12541812	C	T	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:143,71:0.33:214
chr8	38458371	rs3802323	G	T	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	38458552	.	G	GTCT	13488.73	.	AC=2;AF=1.00;AN=2;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	38458659	rs327934	C	T	6269.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr8	38458696	rs7812668	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.48;MQRankSum=0.653;QD=2.39;ReadPosRankSum=-0.311;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:119,31:0.21:150
chr8	38458802	rs327935	A	C	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:6,21:0.78:27
chr8	38677932	rs2013586	A	G	8748.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:192,386:0.67:578
chr8	38684853	rs2037204	T	C	3187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.60;ReadPosRankSum=-0.515;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:46,146:0.76:192
chr8	38697649	rs13262797	T	C	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr8	38705639	rs71721705	G	GA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=1.617;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:247,47:0.16:294
chr8	38709451	rs112953621	TTGAC	T	2740.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:33,69:0.68:102
chr8	38793682	rs4633027	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	38809663	rs6984871	A	C	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	38826290	rs6996274	G	A	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:51,21:0.29:72
chr8	38827185	rs5891050	GC	G	8083.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	38835456	rs4733960	T	C	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	38835666	rs4733961	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	38840591	rs7814264	C	T	3040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=3.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=0.043;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:312,172:0.36:484
chr8	38845638	rs66513029	A	C	368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.229;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr8	38845644	.	T	TAAA	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=4.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.148;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr8	38845716	.	A	G	79	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=26;MQ=60.0;NF=0;NR=6;PP=79;QD=18.9618687579;SC=AAGTTTTTGGATCTTTTTCTT;SbPval=1.0;Source=Platypus;TC=18;TCF=2;TCR=16;TR=6;WE=38845724;WS=38845706;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr8	38848850	rs4733895	C	T	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	38851204	rs28626007	A	C	6292.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:121,286:0.70:407
chr8	38853620	rs6991968	G	A	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.702;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:261,74:0.22:335
chr8	38853983	rs7840270	C	A	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:233,114:0.33:347
chr8	38854041	rs10105311	C	T	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:36,91:0.72:127
chr8	38865692	rs35261462	C	CT	202.74	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr8	38872186	rs7833611	C	A	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	38876466	rs6474518	T	C	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.16;ReadPosRankSum=-1.075;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:106,33:0.24:139
chr8	38876468	rs6474519	C	T	994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-0.947;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:106,32:0.23:138
chr8	38884342	rs10652213	G	GTTCT	7677.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	38899772	rs34138150	G	A	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr8	38911953	rs9643905	C	A	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	38928984	rs34398586	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=3.371;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr8	38940292	rs72459173	GAAATCTCAGGACTAGA	G	5564.73	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:84,140:0.62:224
chr8	38959498	rs4733905	G	A	5223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=0.766;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:61,233:0.79:294
chr8	38965271	rs59118660	C	T	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:612,251:0.29:863
chr8	38987347	rs9650316	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	38988475	.	C	CTTTT	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=1.135;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr8	38991720	rs6997278	A	G	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=1.761;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:159,61:0.28:220
chr8	39004462	rs35275553	T	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	39004620	rs35335280	A	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr8	39007200	rs72640066	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr8	39022522	rs10088854	G	A	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,51:0.62:82
chr8	39068890	rs11786404	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr8	39080632	rs7845771	C	G	9365.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr8	39080824	rs4476978	T	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	39091526	rs4515515	T	C	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;ClippingRankSum=0.000;DB;DP=539;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-1.369;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:376,163:0.30:539
chr8	39114676	rs200807312	GT	G	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=1.304;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr8	39114949	rs73608630	C	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,32:0.47:68
chr8	39128387	rs4733994	C	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-0.676;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:83,30:0.27:113
chr8	39133206	rs4733913	C	G	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr8	39311600	rs7813010	C	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	39311677	rs7834545	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	39312886	rs10097769	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	39332237	rs201680333	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.054;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr8	39442292	rs7007924	T	G	7036.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	39463063	rs4236751	T	C	164.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	39463266	rs12156300	T	G	75.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.17;ReadPosRankSum=1.282;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr8	39487022	rs3735881	C	T	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	39495325	rs3824144	G	A	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	39496029	rs12708194	T	C	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	39496202	rs13278646	G	A	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	39503079	rs6474161	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	39505702	rs79801118	G	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr8	39505826	rs3735880	C	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	39521419	rs6988389	T	C	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	39525750	rs2305392	C	A	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr8	39607105	rs112217136	C	CATGT	2832.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.08;MQRankSum=0.366;QD=35.86;ReadPosRankSum=-0.939;SOR=0.452;set=HC	GT:AD:AF:DP	1/1:3,76:0.96:79
chr8	39682513	rs7845026	G	A	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	39695535	rs7844819	T	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr8	39776289	rs4259403	C	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-2.908;QD=3.64;ReadPosRankSum=-0.686;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr8	39780922	rs67116979	CAA	C,CA	1270.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.379;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.538;QD=9.77;ReadPosRankSum=-1.176;SOR=1.183;set=HC	GT:AD:AF:DP	1/2:25,50,55:0.38,0.42:130
chr8	39842443	rs140841420	C	CTTAT	990.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr8	39843139	rs2729472	A	G	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr8	39862881	rs10109853	C	T	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:55,157:0.74:212
chr8	39862893	rs35212142	T	A	3493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.96;ReadPosRankSum=-2.146;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:49,157:0.76:206
chr8	39871036	rs2955897	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	39871298	rs5891075	T	TTAA	4990.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.81;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	39872668	rs2955902	C	T	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	39872676	rs5891076	GA	G	3201.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:8,161:0.95:169
chr8	39872866	rs2981161	A	C	19074.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:1,700:1.00:701
chr8	39873188	rs2981162	C	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	40011079	rs6474226	G	A	6459.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr8	40389823	rs1429965	C	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:209,161:0.44:370
chr8	40389842	rs1429966	T	C	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:175,142:0.45:317
chr8	40389933	rs4038741	TAA	T	3077.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	40438757	rs17851751	T	C	3174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=2.442;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:145,153:0.51:298
chr8	40438874	rs118005448	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:46,39:0.46:85
chr8	40532142	rs10504034	A	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.902;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr8	40554742	rs11781516	C	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.871;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:38,57:0.60:95
chr8	40554994	rs12546561	C	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;MQ=60.98;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr8	40665997	rs1512214	A	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	40666189	rs11777437	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	40666257	rs11776726	A	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	41166637	rs3832595	GGCT	G	3346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=4.051;QD=5.63;ReadPosRankSum=-2.367;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:477,117:0.20:594
chr8	41297486	rs10637700	T	TTTTG	10604.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:9,250:0.97:259
chr8	41391588	rs10096250	A	G	1189.56	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:6,51:0.89:57
chr8	41391704	rs10096369	A	G	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr8	41391936	rs33975171	TA	T	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.138;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:80,41:0.34:121
chr8	41393799	rs11779810	T	C	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:16,87:0.84:103
chr8	41466789	rs12708212	T	C	4949.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:33,208:0.86:241
chr8	41471786	rs56974803	A	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr8	41478361	rs890220	G	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr8	41517958	rs59908561	A	AG	17040.73	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr8	41519248	rs516946	T	C	28414.77	.	AC=2;AF=1.00;AN=2;DB;DP=1062;set=Intersection	GT:AD:AF:DP	1/1:1,1060:1.00:1061
chr8	41519462	rs515071	A	G	23203.77	.	AC=2;AF=1.00;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	1/1:1,892:1.00:893
chr8	41521663	rs563118	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-2.438;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:713,103:0.13:816
chr8	41529856	rs508112	A	G	26371.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	1/1:2,1023:1.00:1025
chr8	41553835	rs2304883	G	A	2932.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:25,122:0.83:147
chr8	41553928	rs504574	C	G	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=1.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.359;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:342,82:0.19:424
chr8	41555740	rs492008	A	G	4012.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:34,157:0.82:191
chr8	41559609	rs2304880	G	A	1316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=2.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.171;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:482,116:0.19:598
chr8	41563685	rs1137177	G	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.729;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:207,56:0.21:263
chr8	41571826	rs17660898	C	G	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.151;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:95,29:0.23:124
chr8	41574736	rs575817	A	C	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	41575420	rs2304876	A	C	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:3,33:0.92:36
chr8	41580607	rs7826127	T	C	5262.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:44,232:0.84:276
chr8	41580906	rs2304874	G	A	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.430;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=5.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=-0.628;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:146,29:0.17:175
chr8	41585384	rs2304872	T	G	2083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.629;ClippingRankSum=0.000;DB;DP=981;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=0.034;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:788,190:0.19:978
chr8	41585438	rs2304871	G	A	15622.77	.	AC=1;AF=0.500;AN=2;DB;DP=869;set=Intersection	GT:AD:AF:DP	0/1:171,691:0.80:862
chr8	41585571	rs1872877	C	T	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.16;SOR=2.290;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr8	41585571	.	CGCTACG	TGCTACA,TGCTACG	2448	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=27;MQ=60.0;NF=7,45;NR=21,132;PP=196,2448;QD=8.90956695937;SC=CCACTGGGCCCGCTACGGGAC;SbPval=0.58;Source=Platypus;TC=177;TCF=45;TCR=132;TR=28,177;WE=41585585;WS=41585561;set=Platypus	GT:AF:DP	0/1:0.16:177
chr8	41585577	rs2304870	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-1.476;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:137,27:0.16:164
chr8	41615429	rs486223	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	41685814	rs12708213	A	C	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:62,192:0.76:254
chr8	41685845	rs13438989	T	G	7177.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:94,321:0.77:415
chr8	41686017	rs13439740	C	T	15653.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:143,668:0.82:811
chr8	41753843	rs77115522	C	G	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:38,57:0.60:95
chr8	41791386	rs148148486	G	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:166,89:0.35:255
chr8	41794934	rs13748	C	T	1998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.101;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:75,97:0.56:172
chr8	41798202	rs2929896	G	T	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr8	41804047	rs2980902	C	T	74.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.373;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr8	41805249	rs10504048	C	T	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:69,81:0.54:150
chr8	41838503	rs11990460	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr8	42013563	rs150778126	T	TATG	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.601;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.980;QD=5.97;ReadPosRankSum=0.089;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:143,37:0.21:180
chr8	42026393	rs7016041	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.386;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:73,20:0.22:93
chr8	42037924	rs2020922	T	A	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr8	42044871	rs8178750	G	A	2033.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=-1.243;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:32,93:0.74:125
chr8	42044954	rs1058720	G	A	1914.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:35,87:0.71:122
chr8	42172017	rs7814513	C	G	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	42175303	rs2294100	A	T	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	42175385	rs17875715	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr8	42186579	rs2272732	T	C	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	42188550	rs1057741	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	42196441	rs3136717	C	T	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	42259299	rs3736649	A	G	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr8	42404040	rs2974349	C	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	42552633	rs4950	G	A	4138.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	42587796	rs4954	G	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	42591814	.	C	G	253.77	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:59,17:0.22:76
chr8	42761288	.	T	TC	152.73	.	AC=1;AF=0.500;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr8	42798394	.	G	GT	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.415;QD=2.40;ReadPosRankSum=-0.208;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr8	42868455	rs5891200	CT	C	420.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.552;SOR=0.425;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr8	42882555	rs111931018	A	ATTTGT	4252.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	42959007	rs5024011	C	A	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	42977585	rs7005111	C	T	9535.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:109,414:0.79:523
chr8	43002052	rs375505816	CT	C	752.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=2.845;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.450;QD=2.60;ReadPosRankSum=-0.183;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:188,102:0.35:290
chr8	43013936	rs10958738	C	T	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	43054553	rs1126058	T	C	5027.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	47759712	rs3849804	T	G	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	48114087	rs183103954	C	T	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:104,158:0.60:262
chr8	48320529	rs17612211	G	A	1506.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:66,75:0.53:141
chr8	48320563	rs34569190	AT	A	2990.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	48696150	.	C	CA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.532;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.859;QD=0.97;ReadPosRankSum=0.107;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:37,11:0.23:48
chr8	48710684	rs45507799	G	A	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr8	48732074	rs11311765	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.91;ReadPosRankSum=1.062;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr8	48805816	rs11411516	A	AG	8426.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr8	48846519	rs1231202	T	C	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	48866788	rs1231203	T	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr8	48878875	rs142732823	C	T	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:138,197:0.59:335
chr8	48885436	rs762679	T	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	49641784	rs1482261	A	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr8	49643243	rs966703	A	G	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	51306704	rs7015950	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	51362462	rs1481475	A	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	51363078	rs7817955	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	51363430	rs12542191	A	T	60.90	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	51571172	rs1911830	G	A	7151.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr8	51571370	rs1911831	G	A	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	51617430	rs7003356	T	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	52284654	rs5891410	C	CA	265.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr8	52321243	rs2977020	T	C	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:227,118:0.34:345
chr8	52336041	rs2060107	G	C	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr8	52359454	rs151149131	CTA	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.126;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr8	52366156	rs79394014	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:116,59:0.34:175
chr8	52366200	rs6473599	G	A	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:67,128:0.66:195
chr8	52366217	rs6473600	G	A	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:58,120:0.67:178
chr8	52366300	rs7833909	A	G	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,66:0.62:106
chr8	52370326	rs28719126	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.06;ReadPosRankSum=1.245;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	52370326	.	TCT	CCC	273	.	AC=1;AF=0.500;AN=2;BRF=0.04;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=6;PP=273;QD=46.6382678375;SC=ATGTTTCATGTCTACCAAATT;SbPval=0.83;Source=Platypus;TC=13;TCF=3;TCR=10;TR=7;WE=52370336;WS=52370316;set=Platypus	GT:AD:AF:DP	1/0:6,7:0.54:13
chr8	52370328	rs28565404	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.889;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.06;ReadPosRankSum=1.245;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr8	52384670	rs7839439	A	G	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.012;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:43,56:0.57:99
chr8	52384884	rs10958268	G	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,56:0.49:114
chr8	52387486	rs6997795	A	C	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr8	52387742	rs112630208	A	C	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.507;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.577;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr8	52396241	rs7837348	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,30:0.58:52
chr8	52469683	rs10504123	G	A	60.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr8	52721958	rs13252785	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr8	52730441	rs6768	T	C	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=0.879;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:742,179:0.19:921
chr8	52730521	rs4401853	C	T	12480.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr8	52733050	rs12335014	T	A	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:88,85:0.49:173
chr8	52733076	rs77409139	T	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.469;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.500;MQ=57.41;MQRankSum=-12.629;QD=1.02;ReadPosRankSum=-7.279;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:162,32:0.16:194
chr8	52733128	rs62506083	T	G	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.106;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.587;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-10.355;QD=8.78;ReadPosRankSum=4.136;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:105,82:0.44:187
chr8	52733148	rs76104220	C	T	381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=55.13;MQRankSum=-4.984;QD=2.22;ReadPosRankSum=1.987;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:134,38:0.22:172
chr8	52733340	rs35006940	A	AT	433.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	52746153	rs9298462	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:91,102:0.53:193
chr8	52811681	rs10106734	A	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	52811758	rs13263909	C	T	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.348;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr8	53452359	rs34430102	T	TA	569.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.175;QD=4.67;ReadPosRankSum=-2.013;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:70,52:0.43:122
chr8	53543263	.	TTTGGTTA	T	364.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr8	53548691	rs7818347	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr8	53548705	rs12677465	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.07;ReadPosRankSum=-0.733;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	53570529	rs12708142	C	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	53586706	rs17337252	A	G	2212.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:205,124:0.38:329
chr8	53853160	rs75387626	T	C	6943.77	.	AC=1;AF=0.500;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	0/1:259,329:0.56:588
chr8	53853526	rs79536146	G	A	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr8	54628736	rs3735833	C	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.54;ReadPosRankSum=-0.566;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,3:0.43:7
chr8	54723638	rs73680313	T	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-0.106;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr8	54745538	rs6991513	C	G	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	55539395	rs2293869	A	T	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:165,109:0.40:274
chr8	55542540	rs61739567	G	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-1.043;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr8	55590975	rs382476	G	A	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr8	55592336	rs405226	A	G	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr8	55613902	rs858396	C	T	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	55614050	rs4737190	G	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:43,49:0.53:92
chr8	55632762	rs1437782	C	T	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:102,115:0.53:217
chr8	55647367	rs370295274	AGT	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.527;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:84,14:0.14:98
chr8	55671483	rs17404707	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr8	56048060	rs1480763	T	A	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	56048107	rs1480764	C	T	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	56074325	rs7837220	C	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	56076791	rs2291183	G	A	11070.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr8	56076886	rs2291184	A	G	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr8	56185702	.	CTGTGTGTG	C,CTG	266	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.1;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=14;MMLQ=23;MQ=60.6;NF=0,0;NR=11,11;PP=154,266;QD=14.2727272727;SC=GAAAAGAGGACTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=23;TCF=1;TCR=22;TR=11,11;WE=56185721;WS=56185692;set=Platypus	GT:AF:DP	0/1:0.48:23
chr8	56637895	rs10098084	T	A	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chr8	56656195	rs7836019	T	C	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	56656209	rs145209593	CTTG	C	2571.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr8	56657801	rs4738457	C	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	56686224	rs1818	T	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	56705438	rs73603138	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr8	56711449	rs78872630	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:25,42:0.63:67
chr8	56725718	rs193284838	AC	TA	2751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.74;ReadPosRankSum=1.421;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:51,70:0.58:121
chr8	56792586	rs1050855	G	A	17523.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr8	56792685	rs167999	G	A	11077.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr8	56911861	rs2175487	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	57125270	rs6474051	T	C	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	57285647	rs10091783	T	G	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr8	57287545	rs11774683	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	57294501	rs10216893	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	57294571	rs10216409	C	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	57294907	rs10645464	G	GTT	1440.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.28;ReadPosRankSum=1.294;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:3,54:0.95:57
chr8	57295200	rs7002482	C	T	6263.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	57302927	rs34478796	A	ATT	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=7.944;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.663;QD=17.54;ReadPosRankSum=-0.429;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr8	57335839	rs10101218	T	C	3603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.355;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:172,184:0.52:356
chr8	57335918	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=5;HapScore=2;MGOF=17;MMLQ=16;MQ=59.61;NF=104;NR=117;PP=2962;QD=20;SC=TCATGAAACCGTTTTTGTGTG;SbPval=0.43;Source=Platypus;TC=438;TCF=199;TCR=239;TR=221;WE=57335926;WS=57335908;set=Platypus	GT:AD:AF:DP	1/0:217,221:0.50:438
chr8	57349380	rs13268089	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:76,89:0.54:165
chr8	57353826	rs3839874	AG	A	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr8	57358251	rs3808634	C	T	1938.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:69,83:0.55:152
chr8	57358563	rs3840716	CG	C	5100.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	59347184	rs1993453	A	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:44,32:0.42:76
chr8	59411042	rs2162459	G	A	4360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=3.432;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:256,229:0.47:485
chr8	59484899	rs7827910	T	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.506;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr8	59493353	rs74656758	C	T	484.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr8	59498190	rs12677290	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr8	59498614	rs6995115	A	G	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:127,132:0.51:259
chr8	59508076	rs16923588	A	G	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:145,104:0.42:249
chr8	59512334	rs2680903	G	A	6220.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:279,310:0.53:589
chr8	59514105	rs33942423	G	GAA	510.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=5.156;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.271;QD=5.61;ReadPosRankSum=-0.258;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:49,42:0.46:91
chr8	59518452	rs77608120	A	G	1651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.950;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.696;QD=7.34;ReadPosRankSum=3.388;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:129,96:0.43:225
chr8	59520310	rs59269342	A	C	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:243,190:0.44:433
chr8	59544187	rs10504257	A	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr8	59548110	rs76597186	G	A	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.489;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:25,40:0.62:65
chr8	59720604	rs2726600	G	A	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	59764368	rs3837195	CAATA	C	284.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr8	59852168	rs3832587	A	AAC	418.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,14:0.33:42
chr8	59872615	rs3780001	T	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:220,102:0.32:322
chr8	61139280	rs12549573	C	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	61139319	rs12549574	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,46:0.55:84
chr8	61144790	rs73683396	G	T	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:155,141:0.48:296
chr8	61178574	rs7464181	T	C	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:203,155:0.43:358
chr8	61178676	rs5891756	CT	C	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.880;QD=5.38;ReadPosRankSum=-0.688;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:37,30:0.45:67
chr8	61192534	rs28429093	C	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr8	61193453	rs7002846	A	G	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr8	61193522	rs7002871	A	G	4187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-1.098;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:160,109:0.41:269
chr8	61193526	rs7003287	G	A	4324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=-1.333;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:171,121:0.41:292
chr8	61193588	rs10086200	C	T	7193.77	.	AC=1;AF=0.500;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	0/1:435,360:0.45:795
chr8	61193760	rs10101374	T	G	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:133,130:0.49:263
chr8	61193809	rs10086341	A	G	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr8	61655690	rs7836586	G	A	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	61707725	rs4540437	G	A	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr8	61713126	rs5891777	A	ATGGACT	10070.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr8	61713231	rs3890803	C	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr8	61714190	rs41272438	A	T	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:132,112:0.46:244
chr8	61714245	rs10448027	A	G	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.91;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	61732521	rs6471902	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	61734295	rs4509369	A	G	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:51,39:0.43:90
chr8	61748893	rs7005873	C	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	61750860	rs7844902	A	G	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr8	61764076	rs4342642	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	61851407	rs138749865	C	A	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,81:0.58:139
chr8	62003453	rs1367972	A	G	4332.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:305,226:0.43:531
chr8	62003547	rs35220668	G	GC	3568.73	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:198,158:0.44:356
chr8	62289060	rs10957192	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr8	62371260	rs2291607	C	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	62411925	rs71559334	G	GAAAT	5656.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr8	62416074	rs7005617	G	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	62438530	rs4738904	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	62460886	rs10113272	A	G	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	62460894	rs16927479	G	A	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=3.407;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	62475160	rs3802287	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	62475276	rs3802286	C	T	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	62475518	rs3824269	G	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	62479934	rs10090754	C	T	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr8	62496415	rs6471962	C	T	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.208;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr8	62496421	rs35353831	A	AT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=1.466;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr8	62531670	rs35550451	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr8	62545288	rs2882462	C	T	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr8	62550924	rs34108497	T	TA	740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=1.158;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:70,59:0.46:129
chr8	62556590	rs7825861	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr8	62563718	rs7016408	G	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr8	62563764	rs7016141	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	62595068	rs3750278	C	T	9139.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr8	62602295	.	C	CA	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=2.287;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:248,52:0.17:300
chr8	62626962	rs3829051	C	T	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	62627004	rs3750279	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr8	62627510	rs4272369	C	G	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.54;ReadPosRankSum=0.401;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:48,61:0.56:109
chr8	63161462	rs2272014	G	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	63161829	rs5020321	C	A	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	63502434	rs72423486	TTGTGTGTGTGTGTGTG	TTG,T	948.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=49;set=Intersection	GT:AF:DP	1/1:1.00:22
chr8	63891308	rs112823315	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=45.42;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	63891311	rs112888888	A	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=45.88;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	63891319	rs113984807	G	A	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	63891336	rs7015120	A	G	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	63891368	rs6997520	T	C	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	63891446	rs7015302	A	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	63902715	rs56081236	T	G	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	63902886	rs17193714	C	T	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	63902958	rs138702093	G	GT	316.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	63927746	rs17279558	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	63928058	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=1.670;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr8	63928087	rs72658344	C	T	270.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	63938764	rs11545078	G	A	15937.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,612:1.00:612
chr8	63948073	rs12682204	C	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	63948134	rs6998383	A	G	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	63948185	rs199816014	TAA	T	6611.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:20,228:0.92:248
chr8	63948198	rs34099334	A	C	11941.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr8	63951237	rs11545077	C	T	23766.77	.	AC=2;AF=1.00;AN=2;DB;DP=913;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr8	63951312	rs1800909	A	G	13458.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr8	63978658	rs5891887	TA	T	6448.73	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	64098729	rs58419856	A	AG	4574.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	65290650	rs298212	C	T	11579.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr8	65711004	rs7842714	T	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=1.379;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:29,52:0.64:81
chr8	66439551	rs7825011	T	C	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr8	66442851	rs200521355	C	CA	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.419;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.962;QD=6.57;ReadPosRankSum=0.590;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:31,40:0.56:71
chr8	66517486	rs3765205	C	T	1660.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	66525548	rs11559265	T	C	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	66691934	rs972362	T	A	4305.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:187,207:0.53:394
chr8	67025593	.	G	A	423.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr8	67039720	.	C	T	1886.77	.	AC=1;AF=0.500;AN=2;DP=189;set=Intersection	GT:AD:AF:DP	0/1:100,88:0.47:188
chr8	67066238	rs34117579	CT	C	1011.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=4.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.423;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:111,81:0.42:192
chr8	67068131	rs2446433	T	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	67357690	rs1025228	G	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr8	67361018	rs12544088	G	C	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,50:0.56:89
chr8	67364085	rs2465982	T	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr8	67369184	rs2303519	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr8	67380377	rs2719005	C	T	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr8	67380528	rs1060242	T	C	4064.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:152,197:0.56:349
chr8	67380677	rs13682	C	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:40,70:0.64:110
chr8	67411019	rs2251827	T	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	67514825	.	TTG	T	1518.73	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,47:0.54:87
chr8	67577178	rs61753692	G	A	6950.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:285,331:0.54:616
chr8	67590460	rs6983214	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	67592152	rs1057463	T	C	8551.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr8	67755920	rs7008720	C	A	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	67813633	rs2358008	A	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	67970243	rs6997490	A	G	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:55,71:0.56:126
chr8	67973984	rs7812572	C	A	3319.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:126,153:0.55:279
chr8	67987021	rs60761225	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.399;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr8	67999123	rs75348559	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.495;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr8	68062182	rs11296619	CT	C	810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=18.706;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.784;QD=9.89;ReadPosRankSum=1.705;SOR=2.008;set=HC	GT:AD:AF:DP	0/1:17,65:0.79:82
chr8	68130443	rs66494911	AT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=7.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=2.774;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr8	68151226	.	G	GT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.596;QD=0.98;ReadPosRankSum=0.188;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:52,16:0.24:68
chr8	68346582	rs117556189	T	C	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr8	68929993	rs12549702	T	C	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:42,33:0.44:75
chr8	68931680	rs6984225	G	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr8	68939640	rs10957414	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr8	68950289	rs6986739	C	A	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	68965521	rs10504417	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	68965576	rs13273475	A	T	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr8	68968166	rs1434774	C	A	21534.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.77;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,492:1.00:492
chr8	68968171	rs1434775	G	A	21496.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.07;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,477:1.00:477
chr8	68972780	rs13256105	C	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr8	68972907	rs1369164	C	G	12583.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr8	68981979	rs6990381	T	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr8	68984675	rs6985922	C	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:45,53:0.54:98
chr8	68993013	rs12682458	AT	GC	1886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.73;ReadPosRankSum=-2.596;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr8	68995404	rs1030751	C	T	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr8	68995410	rs79583091	TG	T	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr8	68995468	rs1030752	C	T	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,56:0.56:100
chr8	68995633	rs1030753	A	G	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:51,51:0.50:102
chr8	69000207	rs67191979	AC	A	881.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr8	69002965	rs12544121	A	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:44,62:0.58:106
chr8	69003009	rs34882769	GT	G	799.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr8	69009268	rs3812458	C	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:130,101:0.44:231
chr8	69012364	rs1529819	G	A	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,69:0.57:121
chr8	69013818	rs10097733	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,68:0.55:124
chr8	69013865	rs10098030	G	A	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr8	69015242	rs1014663	T	C	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr8	69016055	rs13262734	A	G	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr8	69020496	rs4260880	T	C	3959.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:217,204:0.48:421
chr8	69021138	rs1434761	A	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr8	69031299	rs7015786	A	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,40:0.58:69
chr8	69104521	rs6472389	A	G	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=1.159;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:122,88:0.42:210
chr8	69143712	rs200889201	C	CT	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-1.423;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr8	69217174	rs2692030	T	A	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	69351982	rs2591004	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	69434195	rs2289831	T	C	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:150,168:0.53:318
chr8	69442819	rs56048834	G	A	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:61,82:0.57:143
chr8	69688772	rs7833828	G	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr8	70498501	rs2241882	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chr8	70505272	rs4737996	A	G	13113.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr8	70513855	rs752040	A	G	7853.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr8	70514116	rs1155965	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:33,23:0.41:56
chr8	70516940	rs4737998	G	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr8	70516968	rs76379305	A	G	762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-2.386;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr8	70516969	rs4737284	G	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=2.403;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr8	70539661	rs5892211	C	CA	448.14	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:4,27:0.87:31
chr8	70539911	rs4738002	G	A	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	70540216	rs3802275	C	T	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	70550678	rs149790744	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:54,49:0.48:103
chr8	70550924	rs17721567	A	C	6135.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:223,273:0.55:496
chr8	70554689	rs7814130	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,28:0.52:54
chr8	70571313	rs3802278	G	A	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:243,186:0.43:429
chr8	70571531	rs6990375	G	A	2962.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:142,144:0.50:286
chr8	70571622	rs11996377	A	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,25:0.41:61
chr8	70588741	rs10448033	T	C	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:73,57:0.44:130
chr8	70588878	rs10448034	T	C	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:245,221:0.47:466
chr8	70674223	rs73684303	C	T	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr8	70743865	rs80084979	G	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr8	70744812	rs3750266	G	A	5230.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:229,250:0.52:479
chr8	70964399	rs10089937	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr8	70967607	rs3750225	T	C	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:256,156:0.38:412
chr8	70967727	rs3750226	T	C	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:44,23:0.34:67
chr8	70980738	rs3750228	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr8	71037103	.	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=7.980;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.096;QD=0.64;ReadPosRankSum=-0.155;SOR=1.597;set=HC	GT:AD:AF:DP	0/1:108,23:0.18:131
chr8	71071695	rs2272670	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	71078749	rs55654377	G	T	4741.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:187,220:0.54:407
chr8	71082718	rs2958370	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	71129120	rs71558586	A	AAC	919.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	71486568	rs268566	G	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	71506634	rs3816745	G	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	71510093	rs268626	A	G	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	71512349	rs268592	A	T	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	71550058	rs268571	G	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	71550895	rs11399242	C	CT	198.37	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr8	71573259	rs35863913	C	T	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	71574251	rs17760050	A	T	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	71593425	rs6991329	G	A	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	71593663	rs71560435	CTTA	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	71646680	rs193050616	A	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	72137261	rs13262002	G	C	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr8	72181868	rs76660214	T	C	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:52,47:0.47:99
chr8	72246578	rs7840881	A	G	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr8	72755040	rs7812453	A	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:189,90:0.32:279
chr8	72755647	rs35471181	C	CT	4357.73	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:182,146:0.45:328
chr8	72756555	.	T	C	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DP=489;ExcessHet=3.0103;FS=2.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.500;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:413,76:0.16:489
chr8	72914433	rs35305136	CT	C	900.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.517;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=0.936;SOR=0.467;set=HC	GT:AD:AF:DP	1/1:8,67:0.89:75
chr8	72914638	rs12544348	G	A	1736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.39;ReadPosRankSum=0.538;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:140,95:0.40:235
chr8	72932259	rs66527710	C	T	5781.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:260,282:0.52:542
chr8	72935039	rs10085964	C	T	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=-0.400;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:39,28:0.42:67
chr8	72935045	rs10086177	G	C	1279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=-1.735;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:42,37:0.47:79
chr8	72936145	rs959976	T	C	1807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.42;ReadPosRankSum=1.040;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:96,96:0.50:192
chr8	72936237	rs1384001	C	A	1158.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:67,57:0.46:124
chr8	72938332	rs2305017	G	C	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:79,49:0.38:128
chr8	72938359	rs2305019	T	C	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:50,34:0.40:84
chr8	72942210	rs3824151	G	T	17413.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr8	72948588	rs13280644	C	T	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:157,160:0.50:317
chr8	72952123	rs3214737	G	GT	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	72952145	rs2044271	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	72958691	rs11349767	TA	T	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.07;ReadPosRankSum=0.817;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr8	72959535	rs13255063	T	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	72962985	rs2120474	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	72963109	rs35427625	G	A	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.143;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=2.110;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:72,54:0.43:126
chr8	72963135	rs1025927	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:64,52:0.45:116
chr8	72963258	rs1025928	T	C	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	72963296	rs1025929	A	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr8	72966002	rs3735943	G	A	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.37;ReadPosRankSum=-0.466;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:76,59:0.44:135
chr8	72966124	rs3735944	A	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr8	72971570	rs9298198	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-0.570;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr8	72975619	rs34929058	GA	G	683.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=3.252;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:63,51:0.45:114
chr8	72975801	rs7819749	T	G	1365.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr8	72981221	rs16937970	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:74,66:0.47:140
chr8	72981327	rs1811457	A	G	3128.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:185,152:0.45:337
chr8	72981499	rs10091093	C	T	1022.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:49,46:0.48:95
chr8	72984041	rs16937976	C	G	712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=-1.527;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr8	72987638	rs13268757	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:77,45:0.37:122
chr8	73117447	rs11783602	T	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;MQ=56.06;set=Intersection	GT:AD:AF:DP	0/1:106,94:0.47:200
chr8	73142726	rs58254809	CA	C	2109.73	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:122,81:0.40:203
chr8	73146170	rs375770708	A	AT	506.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr8	73150491	rs6989765	G	A	1985.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:60,88:0.59:148
chr8	73150830	rs62518400	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr8	73156976	rs2017235	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr8	73157131	rs17824282	C	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:191,133:0.41:324
chr8	73850203	rs11782118	G	A	7361.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:264,349:0.57:613
chr8	73921534	rs113373855	G	GGAGGTCGGGAGA	4756.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	73926236	rs2975841	T	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,31:0.62:50
chr8	73926325	rs34859101	A	C	821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=3.139;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:39,43:0.52:82
chr8	73926355	rs141011701	GGT	G	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.960;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:50,9:0.15:59
chr8	73982161	rs2291219	A	G	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:121,75:0.38:196
chr8	73983988	rs3830249	TAA	T,TAAA	3911.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.794;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.820;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=0.617;SOR=0.967;set=HC	GT:AD:AF:DP	1/2:29,87,64:0.48,0.36:180
chr8	73983994	rs114487364	A	T	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:110,85:0.44:195
chr8	73993200	rs10087744	T	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:99,91:0.48:190
chr8	74203576	rs4394387	G	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	74204653	rs2070764	A	T	4029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=4.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.04;ReadPosRankSum=0.132;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:167,198:0.54:365
chr8	74209746	rs34188852	T	C	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr8	74234193	rs9298224	G	A	2775.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:222,148:0.40:370
chr8	74332207	rs6998213	A	G	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	74440125	rs143916422	T	TCAGGAAAATTCAAATAATTTA	10175.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	74463089	rs3088139	T	G	3260.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.238;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.09;ReadPosRankSum=-0.916;SOR=0.236;set=HC	GT:AD:AF:DP	1/1:1,124:0.99:125
chr8	74463724	rs79320778	TTTAA	T	2178.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:45,56:0.55:101
chr8	74463797	rs10112019	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	74473876	rs28418483	G	A	5227.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:222,253:0.53:475
chr8	74473951	rs12546339	C	T	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:123,119:0.49:242
chr8	74495084	rs16938696	C	T	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-2.068;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:82,39:0.32:121
chr8	74527996	rs949493	C	T	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	74581290	rs11419133	A	AG	19059.73	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr8	74744721	rs7842946	T	C	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr8	74782627	.	G	GA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=1.981;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.890;QD=1.23;ReadPosRankSum=1.673;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:113,30:0.21:143
chr8	74782696	rs34722969	T	C	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr8	74791162	rs34584592	G	C	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:266,188:0.41:454
chr8	74868305	rs12676883	T	C	4295.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:151,205:0.58:356
chr8	74888616	rs8075	G	C	1675.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:51,77:0.60:128
chr8	74890927	rs112765233	C	CA	581.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,38:0.73:52
chr8	74890961	rs62509309	A	G	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:52,75:0.59:127
chr8	74891164	rs75674446	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr8	74891200	rs73687119	A	G	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr8	74893821	rs1053079	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr8	74893850	rs1053077	C	G	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr8	74893880	rs7108	C	T	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr8	74917084	rs6472812	A	G	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr8	75227885	rs16938872	G	A	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:155,102:0.40:257
chr8	75262798	rs7828201	G	C	12851.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr8	75262841	rs4321999	G	A	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr8	75272287	rs3780014	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr8	75274062	rs116975351	T	A	3024.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:106,133:0.56:239
chr8	75274141	rs11554166	T	G	5238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-0.642;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:241,264:0.52:505
chr8	75275312	rs4463412	C	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	75460784	rs150212729	T	TG	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	75460789	rs150990986	A	AG	1015.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.32;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	75460940	rs66692547	T	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.538;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr8	75924820	rs12115090	A	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:37,37:0.50:74
chr8	75944409	rs10714892	AT	A	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.952;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,23:0.55:42
chr8	76452313	rs2943549	G	A	5604.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	76452421	rs2943551	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	76459726	rs1800922	G	A	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	76465522	rs1800924	T	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	76468139	rs2941468	C	G	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	76468282	rs1805098	G	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	76468309	rs61003427	GTT	G	136.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	76472485	rs2941472	G	A	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	77776848	rs3830275	TA	T	492.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.25;ReadPosRankSum=0.323;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,26:0.96:27
chr8	77879257	rs7000529	T	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	77895865	rs10087163	A	G	15707.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr8	77911986	rs137919839	CTG	C	2479.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:89,83:0.48:172
chr8	79591017	rs28429528	G	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	79598666	rs142222654	GTTTA	G	10907.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr8	79601420	rs1872072	T	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	79610710	rs1054283	A	G	8715.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr8	79629738	rs5892663	C	CA	1839.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=4.127;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.816;QD=11.72;ReadPosRankSum=0.668;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:36,121:0.77:157
chr8	80523667	rs35479042	G	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr8	80553512	rs13269060	G	A	1251.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,52:0.58:90
chr8	80577224	rs71756967	T	TA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.468;QD=1.12;ReadPosRankSum=0.322;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr8	80678300	rs11448857	C	CA	1712.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:56,81:0.59:137
chr8	80678865	rs960978	C	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr8	80965039	rs3824267	T	A	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	80965070	rs3780010	C	A	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.97;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	80965739	rs2303446	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	81032301	rs4740118	A	T	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr8	81412366	.	G	A	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=462;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.05;ReadPosRankSum=-0.842;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:390,71:0.15:461
chr8	81553804	rs60295176	GA	G	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.565;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.083;QD=2.36;ReadPosRankSum=-1.751;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:60,34:0.36:94
chr8	82441532	rs3842190	T	TG	1411.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:36,41:0.53:77
chr8	82443387	rs11985337	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr8	82590822	rs2932222	C	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr8	82590861	rs2991004	G	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.654;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr8	82597943	rs112751957	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr8	82606782	rs2955006	A	G	2222.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:98,106:0.52:204
chr8	82627395	rs58900840	A	C	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:122,117:0.49:239
chr8	82629447	rs62512330	G	A	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=2.295;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:86,53:0.38:139
chr8	82713832	rs33964984	C	CA	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.500;QD=1.98;ReadPosRankSum=0.429;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:60,20:0.25:80
chr8	82713930	rs61516400	A	AGAGT	292.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr8	82741576	rs34550849	C	CA	199.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr8	85441856	rs13248532	T	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr8	85686975	rs2718970	C	T	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:52,60:0.54:112
chr8	85716963	rs11784597	C	A	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr8	86021994	rs62525422	G	A	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:92,87:0.49:179
chr8	86042410	rs13266669	G	A	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr8	86048000	rs36102162	AT	A	1625.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.100;MLEAC=2;MLEAF=1.000;MQ=60.44;MQRankSum=0.445;QD=17.11;ReadPosRankSum=0.588;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:5,90:0.95:95
chr8	86057707	rs62525428	A	G	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.900;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:62,54:0.47:116
chr8	86089787	rs12926	C	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	86114525	rs3217409	T	TTTA	820.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	86121311	rs3808538	G	T	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	86126827	rs112611553	C	CAACATT	6282.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	86134784	rs12550160	C	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	86135096	rs2132589	A	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	86135132	rs1021583	A	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	86158217	rs34150174	TTAAAC	T	4135.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	86158249	rs17740658	C	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	86161990	rs62527224	A	G	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr8	86163230	.	CTTT	C,CT	2218.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=4.810;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.35;MQRankSum=0.731;QD=21.75;ReadPosRankSum=0.303;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:12,45,45:0.44,0.44:102
chr8	86171786	rs4739698	T	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	86171816	rs4739699	A	G	4018.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	86180906	.	CTT	C,CT	781.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.245;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=1.165;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.822;QD=9.31;ReadPosRankSum=-0.726;SOR=0.948;set=HC	GT:AD:AF:DP	1/2:18,31,35:0.37,0.42:84
chr8	86180944	rs2006767	A	G	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	86244914	rs1995058	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=-0.023;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr8	86250709	rs4740049	T	C	8158.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr8	86253707	rs142346369	T	TA	189.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr8	86253982	rs1496532	C	T	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,68:0.55:123
chr8	86254062	rs1496531	T	A	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr8	86351997	rs20571	G	A	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	86360458	rs11340759	TC	T	3539.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	86388228	rs2307075	A	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	86389195	rs11780942	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	86389403	rs703	T	C	11284.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr8	87060672	rs3802225	A	G	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:46,80:0.63:126
chr8	87076150	rs981711	C	G	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	87076520	rs6998760	C	A	4140.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:176,190:0.52:366
chr8	87111368	rs11382900	G	GA	1332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.113;QD=5.55;ReadPosRankSum=-0.233;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:129,111:0.46:240
chr8	87126151	rs17602780	G	A	3036.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:230,164:0.42:394
chr8	87126178	rs17660682	G	C	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:159,111:0.41:270
chr8	87151606	rs2466326	G	C	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	87155037	rs17603897	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr8	87155094	rs1483779	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	87155225	rs75594898	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=0.706;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:80,40:0.33:120
chr8	87226700	rs9656982	A	G	2332.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:109,119:0.52:228
chr8	87226963	rs76235312	C	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:50,36:0.42:86
chr8	87229706	rs145100097	G	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr8	87229948	rs4621787	T	A	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=1.058;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:101,88:0.47:189
chr8	87235150	rs2976190	C	T	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr8	87235273	rs2976189	C	T	3645.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:283,189:0.40:472
chr8	87241715	rs2954347	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,38:0.49:77
chr8	87241797	rs11413051	A	AT	3684.73	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:165,195:0.54:360
chr8	87241847	rs7814198	G	A	6900.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:275,326:0.54:601
chr8	87452766	rs4961191	A	G	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	87453030	rs10092164	A	G	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	87455070	rs71275852	TAA	TA,T	694.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	1/1:1.00:40
chr8	87470141	rs148927503	AT	A	5692.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	87482324	rs6471352	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	87489396	rs57638937	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	87519315	rs6980476	T	G	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr8	87540872	rs10956871	G	A	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	87543280	rs72690455	C	T	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	87544832	rs72690457	A	G	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	87552426	rs16915389	T	C	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr8	87560151	rs10094332	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	87567031	rs2304790	G	A	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	87567193	rs2304789	C	T	8172.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr8	87567305	rs3816240	A	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	87568644	rs2304787	T	G	5785.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	87570665	rs1062850	A	C	17218.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:3,647:1.00:650
chr8	87570728	rs1062851	C	T	7200.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr8	87581682	rs10660354	T	TCA	4973.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	87581726	rs10104791	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=28.50;SOR=3.171;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	87588519	rs974279	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	87641403	rs1866907	G	T	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	87751848	rs78198409	GT	G	885.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.682;QD=7.38;ReadPosRankSum=1.764;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:38,82:0.68:120
chr8	87899871	rs66493340	T	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	87899960	rs67958512	A	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	87917236	rs10504828	T	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	87951714	rs4644279	A	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	88218202	.	AT	A	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=1.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=-0.673;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:64,30:0.32:94
chr8	88622001	rs9692781	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:92,61:0.40:153
chr8	88622043	rs9694259	T	G	3705.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.311;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.91;ReadPosRankSum=-0.627;SOR=0.285;set=HC	GT:AD:AF:DP	1/1:1,142:0.99:143
chr8	88622592	rs72670872	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr8	88624391	.	CTT	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.70;ReadPosRankSum=0.542;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr8	89068596	rs2616495	C	T	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	89081541	rs2664347	A	T	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	89081730	rs2616490	T	C	9901.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr8	89128708	rs11384621	T	TA	897.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.137;QD=5.51;ReadPosRankSum=0.777;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:91,72:0.44:163
chr8	89198831	.	CAAAA	C	499.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=0.935;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr8	89339991	.	GCGCA	G	1016	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=96;MMLQ=23;MQ=60.43;NF=28;NR=23;PP=1016;QD=20.0784313725;SC=GCGCGCGCGCGCGCACACACA;SbPval=0.51;Source=Platypus;TC=63;TCF=35;TCR=28;TR=51;WE=89340002;WS=89339987;set=Platypus	GT:AD:AF:DP	1/0:12,51:0.81:63
chr8	89339993	.	GCA	G	118.73	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:66,15:0.19:81
chr8	89340162	rs16892543	G	C	5742.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:407,308:0.43:715
chr8	90770609	rs39499	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr8	90777510	rs431264	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr8	90781953	rs40377	C	T	1431.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:58,62:0.52:120
chr8	90792127	rs39506	A	C	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr8	90921778	rs371682094	CT	C	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=2.378;QD=8.10;ReadPosRankSum=0.501;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:30,49:0.62:79
chr8	91094086	rs7815279	A	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	91094983	rs3087750	G	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	91992746	rs2740774	C	T	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	92021036	rs2054805	C	T	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	92030760	rs141135624	AAC	A	7673.73	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:131,224:0.63:355
chr8	92033502	rs34503257	T	C	7972.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:166,366:0.69:532
chr8	92082753	rs3808378	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr8	92083230	rs28429767	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr8	92083424	rs11557571	A	G	5072.77	.	AC=1;AF=0.500;AN=2;DB;DP=940;set=Intersection	GT:AD:AF:DP	0/1:634,297:0.32:931
chr8	92083592	rs5893159	CT	C	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.892;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.970;QD=6.41;ReadPosRankSum=-0.356;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:29,43:0.60:72
chr8	92090573	rs11786324	G	C	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.747;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.370;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:199,66:0.25:265
chr8	92130316	rs55762572	A	G	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:269,120:0.31:389
chr8	92136728	rs11785003	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-1.091;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:122,40:0.25:162
chr8	92139254	rs12544236	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr8	92145322	.	GT	G	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-1.796;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr8	92301249	rs4734009	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:36,35:0.49:71
chr8	92307978	rs10107822	C	T	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr8	92352887	rs7012287	C	T	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	92364204	rs17666398	A	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr8	92378782	rs10099092	C	T	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=0.574;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:49,37:0.43:86
chr8	92972780	rs2977676	G	A	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:136,146:0.52:282
chr8	93088151	rs13252280	C	T	7571.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	93328787	.	GAGAAGTAGAAGTAGAAGT	G	878.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.89;MQRankSum=-0.000;QD=28.35;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr8	93328817	.	GAGAAGGAGAAGGAGAAGAAGA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=-0.000;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.89;MQRankSum=0.549;QD=0.83;ReadPosRankSum=1.033;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:38,5:0.12:43
chr8	93328993	rs138085384	CGAAGAA	CGAA,C	2465.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=96;set=Intersection	GT:AF:DP	1/1:1.00:58
chr8	93904087	rs3780016	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	94359032	rs12677732	A	G	2915.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:122,142:0.54:264
chr8	94715965	rs6997642	C	G	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.456;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:37,32:0.46:69
chr8	94738629	rs36117362	G	A	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:41,45:0.52:86
chr8	94739345	rs2914959	A	G	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:197,122:0.38:319
chr8	94752754	rs3813853	G	A	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:94,78:0.45:172
chr8	94770615	rs34022540	C	G	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr8	94794620	rs3097427	C	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.225;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.822;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:49,38:0.44:87
chr8	94808165	rs3134031	A	G	3871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=-0.337;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:300,206:0.41:506
chr8	94928208	rs4236818	A	C	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:150,110:0.42:260
chr8	94935937	rs4735258	T	C	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr8	95143172	rs1051624	T	G	11540.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	95143186	rs1051623	C	G	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr8	95158146	rs13263145	G	C	8033.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr8	95158382	rs1131830	C	T	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	95160949	rs151133817	GT	G	372.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=1.564;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:110,54:0.33:164
chr8	95182801	rs72670354	G	T	6161.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:397,315:0.44:712
chr8	95182986	rs2446866	T	C	1041.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr8	95186295	rs2514813	T	C	5621.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	95186382	rs3214050	G	A	1960.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.283;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.861;QD=12.82;ReadPosRankSum=-0.002;SOR=0.328;set=HC	GT:AD:AF:DP	0/1:64,89:0.58:153
chr8	95186510	.	G	GA	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.634;QD=1.41;ReadPosRankSum=1.853;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr8	95188850	rs2243518	T	C	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	95206799	rs56129387	G	T	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	95272605	rs2170363	G	C	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:170,161:0.49:331
chr8	95390921	rs716770	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:101,75:0.43:176
chr8	95419698	rs2291439	A	G	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:132,106:0.45:238
chr8	95470697	rs2919660	C	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr8	95479879	rs3099398	A	G	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:144,123:0.46:267
chr8	95504224	rs3098725	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,21:0.38:55
chr8	95507237	rs112365062	A	AT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=0.527;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:137,29:0.17:166
chr8	95507328	rs4366055	A	C	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr8	95521853	.	TAC	T	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=0.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=0.422;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:202,35:0.15:237
chr8	95524209	rs3099412	C	T	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:132,72:0.35:204
chr8	95541223	rs957447	C	A	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:86,58:0.40:144
chr8	95541302	rs957448	A	G	4109.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:354,234:0.40:588
chr8	95541371	rs957446	T	A	4876.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:412,264:0.39:676
chr8	95541663	rs3098719	T	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr8	95547005	rs58871154	A	AT	874.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.374;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.300;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:122,70:0.36:192
chr8	95547119	rs2304764	T	G	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.651;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=67.476;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.584;QD=3.78;ReadPosRankSum=1.288;SOR=4.345;set=HC	GT:AD:AF:DP	0/1:311,104:0.25:415
chr8	95550357	rs1866845	A	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr8	95559092	rs3133651	T	C	9993.77	.	AC=1;AF=0.500;AN=2;DB;DP=1055;set=Intersection	GT:AD:AF:DP	0/1:564,486:0.46:1050
chr8	95565538	rs3133658	G	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:207,137:0.40:344
chr8	95651239	rs7824334	T	G	15771.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:1,578:1.00:579
chr8	95651590	rs5893292	C	CT	18062.73	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr8	95651599	rs2162237	A	C	17161.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr8	95658287	rs149099719	A	AT	493.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	95658526	rs60139063	T	C	4468.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	95658562	rs57602858	A	AAAAT	3800.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	95673674	rs6471455	A	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	95676785	rs17717009	G	A	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	95676894	rs17644352	C	G	14242.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr8	95677132	rs1426171	T	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	95686850	rs17717431	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	95690579	rs12677519	T	C	9173.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr8	95718131	rs61112381	CTTTT	C,CT	2054.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.36;SOR=1.067;set=HC	GT:AD:AF:DP	1/2:0,41,14:0.75,0.25:55
chr8	95718314	rs11785	T	C	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	95732283	rs13267007	G	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	95738717	rs7816645	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.62;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	95746833	rs7815731	C	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	95750546	rs201512830	CA	C	374.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.502;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.716;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.471;QD=11.02;ReadPosRankSum=-0.425;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:5,29:0.85:34
chr8	95793284	rs36116205	A	AT	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.430;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.104;QD=4.18;ReadPosRankSum=-0.210;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:42,33:0.44:75
chr8	95793515	rs4398879	G	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	95796177	rs4236830	T	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	95800325	rs4428644	T	A	369.10	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=2.698;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:3,20:0.87:23
chr8	95853708	rs11996455	G	A	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	95853907	rs13271375	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	95853948	rs13271644	A	G	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	95877787	rs713113	T	C	15939.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr8	95886551	rs10956928	A	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.32;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	95888307	rs1129152	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	95902819	rs139407777	ATT	A	2406.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.007;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.789;QD=15.04;ReadPosRankSum=-2.374;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:46,114:0.71:160
chr8	95902822	.	T	A	47.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.640;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.673;QD=0.24;ReadPosRankSum=1.642;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:160,35:0.18:195
chr8	95902823	.	T	A	1346.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.228;QD=7.65;ReadPosRankSum=0.792;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:76,100:0.57:176
chr8	95902824	.	T	A	453.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=2.155;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.926;QD=2.48;ReadPosRankSum=0.863;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:129,54:0.30:183
chr8	95902825	.	T	A	1529.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DP=255;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.072;QD=8.64;ReadPosRankSum=0.315;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:65,112:0.63:177
chr8	95906554	rs2466431	C	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	95951807	rs2013597	G	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	95951916	rs5893310	GTGAC	G	4335.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	95952477	rs2956210	A	G	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	96046094	rs2678823	G	A	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	96047806	rs34960210	T	TA	1180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.396;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:45,77:0.63:122
chr8	96053782	rs79118993	GCT	G	2971.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	96054000	rs7818382	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr8	96069973	rs33972988	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.046;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr8	96070181	rs2678832	T	C	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	96085317	rs4641029	C	T	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr8	96264239	rs149361981	CAT	C	490.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	96271917	rs78407348	G	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr8	96272791	rs76316160	T	C	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,59:0.50:118
chr8	96281480	rs142455613	A	AGGGGACCTGGC	3637.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=15.546;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.155;QD=16.39;ReadPosRankSum=-1.237;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:126,96:0.43:222
chr8	97172403	rs2466129	A	G	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	97243720	rs2292835	G	A	3937.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:163,179:0.52:342
chr8	97246978	rs2643339	C	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=2.306;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr8	97256341	rs6993518	T	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr8	97257982	rs871798	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr8	97258719	rs1878638	C	T	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-0.214;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:37,40:0.52:77
chr8	97269229	.	CAT	C	3555.73	.	AC=1;AF=0.500;AN=2;DP=258;set=Intersection	GT:AD:AF:DP	0/1:157,99:0.39:256
chr8	97270991	rs2319603	G	A	799.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr8	97296205	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.642;QD=0.75;ReadPosRankSum=1.102;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:68,18:0.21:86
chr8	97299468	.	T	C	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.853;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-1.819;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:82,20:0.20:102
chr8	97321898	rs961075	T	A	1616.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:50,74:0.60:124
chr8	97332661	rs3735987	A	G	1722.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:77,79:0.51:156
chr8	97342536	rs2280263	A	G	3311.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:169,159:0.48:328
chr8	97342582	rs7001397	C	T	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:61,70:0.53:131
chr8	97343176	rs2271775	G	T	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr8	97343326	rs3830537	ATCTTGT	A	2822.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:102,77:0.43:179
chr8	97345590	rs3735986	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr8	97384315	rs2319815	A	T	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	97384408	rs2244423	C	T	8243.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	97384625	rs34027129	A	AG	630.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	97398106	rs369856367	TTC	T	1385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.719;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.296;QD=2.03;ReadPosRankSum=0.396;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:581,101:0.15:682
chr8	97398842	rs12541366	T	A	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	97847358	rs1864384	G	T	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr8	97978172	rs142184192	G	A	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=2.000;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:66,75:0.53:141
chr8	98289986	rs28669903	C	T	14149.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr8	98787739	rs2002451	C	T	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.52;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr8	98787752	rs112936102	CA	C	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.424;QD=2.40;ReadPosRankSum=0.056;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:94,47:0.33:141
chr8	98787994	rs2449510	A	G	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr8	98788033	rs2449509	G	C	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	98817552	rs57251463	C	CTT	721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.62;ReadPosRankSum=-0.415;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr8	98943545	rs2290471	A	G	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:261,217:0.45:478
chr8	98954012	rs2513845	T	C	10647.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr8	98954272	rs3018906	T	A	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	98973560	rs62523561	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	99105365	rs5893451	GC	G	1219.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr8	99118654	rs2242196	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr8	99140544	rs2447508	G	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	99205111	rs3735885	T	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,70:0.51:136
chr8	99208244	rs7010905	G	T	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr8	99895940	rs16897117	G	A	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:227,232:0.51:459
chr8	100026275	rs12547849	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr8	100123218	.	CTTA	C	67.73	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr8	100133706	rs7460625	T	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr8	100160282	rs199769640	ATT	A	1112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=12.09;ReadPosRankSum=-1.385;SOR=1.621;set=HC	GT:AD:AF:DP	0/1:35,57:0.62:92
chr8	100287579	rs7840337	G	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr8	100443679	rs3103703	A	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr8	100479917	rs3134156	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr8	100514124	.	GTCCC	G	760.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.00;MQRankSum=2.739;QD=12.68;ReadPosRankSum=-2.536;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr8	100523793	rs117661187	C	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:58,57:0.50:115
chr8	100548975	rs16897440	C	T	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:248,157:0.39:405
chr8	100844758	rs36074608	T	C	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.460;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:76,53:0.41:129
chr8	100871751	.	C	CT	1005.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.45;ReadPosRankSum=-0.733;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:57,78:0.58:135
chr8	100975002	rs6468700	A	G	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr8	101020548	rs3101322	C	G	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	101051024	rs930965	C	A	5459.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	101053980	rs922207	C	T	10549.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr8	101059662	rs2980542	G	A	13722.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr8	101084647	rs34914779	GT	G	883.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	101117554	rs1471294	T	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,43:0.49:87
chr8	101117734	rs1471293	A	G	4216.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:355,229:0.39:584
chr8	101137897	rs2453626	T	C	1348.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:107,69:0.39:176
chr8	101138096	rs1460933	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,38:0.46:83
chr8	101149939	rs2453629	G	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr8	101153024	rs1460934	G	A	5421.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:282,267:0.49:549
chr8	101157227	rs2514689	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr8	101163986	rs2453641	T	G	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr8	101196824	rs2453656	G	A	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:72,61:0.46:133
chr8	101225241	rs11280812	C	CCCGCGGCCT	1322.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,33:0.30:111
chr8	101225298	rs3098659	C	T	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:198,137:0.41:335
chr8	101225559	rs2514681	C	G	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:98,106:0.52:204
chr8	101225838	rs2514682	C	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr8	101232701	rs2919471	T	C	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr8	101252680	rs6511	T	C	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:97,95:0.49:192
chr8	101253092	.	G	GT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=12.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=2.030;SOR=1.694;set=HC	GT:AD:AF:DP	0/1:119,39:0.25:158
chr8	101270659	rs191805298	T	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr8	101271214	rs368674512	T	C	7186.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:265,347:0.57:612
chr8	101281238	rs7014862	C	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr8	101281271	rs1660324	C	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr8	101540233	.	TA	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=0.458;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:44,24:0.35:68
chr8	101542205	rs2469652	G	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr8	101586133	rs2022923	T	C	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:75,80:0.52:155
chr8	101608919	rs2248609	T	C	2721.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:104,131:0.56:235
chr8	101620541	rs2469668	T	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr8	101620557	rs11418392	A	AC	712.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr8	101629995	.	C	CT	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=1.240;SOR=1.406;set=HC	GT:AD:AF:DP	0/1:34,11:0.24:45
chr8	101718932	rs62513920	C	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.630;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=15.037;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-7.790;QD=2.21;ReadPosRankSum=0.206;SOR=2.316;set=HC	GT:AD:AF:DP	0/1:117,25:0.18:142
chr8	101718965	rs62513921	G	A	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=24.912;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-9.819;QD=2.72;ReadPosRankSum=3.969;SOR=2.848;set=HC	GT:AD:AF:DP	0/1:195,30:0.13:225
chr8	101718968	rs62513922	C	T	606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=24.980;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-9.914;QD=2.65;ReadPosRankSum=3.889;SOR=2.870;set=HC	GT:AD:AF:DP	0/1:199,30:0.13:229
chr8	101721705	rs201017624	G	T	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=714;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-19.951;QD=2.48;ReadPosRankSum=-10.737;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:623,84:0.12:707
chr8	101721709	rs146200489	T	A	2061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=-19.243;QD=2.80;ReadPosRankSum=-11.352;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:632,105:0.14:737
chr8	101721727	rs139094790	G	A	1472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-17.407;QD=1.76;ReadPosRankSum=-7.459;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:683,153:0.18:836
chr8	101721756	rs57799615	A	C	2779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.575;ClippingRankSum=0.000;DB;DP=937;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-20.655;QD=2.99;ReadPosRankSum=3.964;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:712,219:0.24:931
chr8	101721812	rs200409148	G	A	8812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.368;ClippingRankSum=0.000;DB;DP=915;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-14.183;QD=9.70;ReadPosRankSum=2.155;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:646,263:0.29:909
chr8	101721817	rs201076736	T	C	8729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.354;ClippingRankSum=0.000;DB;DP=903;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-13.029;QD=9.73;ReadPosRankSum=0.686;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:642,255:0.28:897
chr8	101721839	rs202074479	C	A	2469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DB;DP=790;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-9.422;QD=3.13;ReadPosRankSum=-1.897;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:608,182:0.23:790
chr8	101721870	rs146609644	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.942;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=8.690;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-12.084;QD=0.69;ReadPosRankSum=-2.911;SOR=1.541;set=HC	GT:AD:AF:DP	0/1:546,84:0.13:630
chr8	101722092	rs1693557	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr8	101937370	rs964919	A	T	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.52;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	101937374	rs3105460	A	G	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	101937455	rs964917	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	101960433	rs73697345	A	G	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr8	102504974	rs515622	C	G	10191.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr8	102555060	rs470801	G	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	102676566	rs3029400	T	TGAA	3478.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	102678798	rs10093032	C	T	16364.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:3,616:1.00:619
chr8	102678972	rs3735713	G	A	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	102701456	rs375965103	CA	C	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.252;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.573;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.552;QD=1.07;ReadPosRankSum=0.820;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:212,67:0.24:279
chr8	103137693	rs487571	T	C	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	103137842	rs34763968	TA	T	39	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	103220351	rs1265117	A	G	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr8	103236437	.	T	A	586.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr8	103311874	rs118075062	G	A	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr8	103339924	rs139485637	C	T	4788.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:182,227:0.56:409
chr8	103372743	rs6468823	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	103541502	rs66648401	A	G	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	103572992	rs3018444	C	G	62899.77	.	AC=2;AF=1.00;AN=2;DB;DP=1408;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,1403:1.00:1403
chr8	103573001	rs3018445	C	G	67347.77	.	AC=2;AF=1.00;AN=2;DB;DP=1482;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,1479:1.00:1479
chr8	103573006	rs2916569	G	A	67738.77	.	AC=2;AF=1.00;AN=2;DB;DP=1537;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,1534:1.00:1534
chr8	103664698	rs10639139	A	AT	215.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.99;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chr8	103841709	rs62522600	G	A	5861.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:269,281:0.51:550
chr8	103845526	rs2304348	A	C	1454.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:33,57:0.63:90
chr8	103846823	rs71303443	A	AAAC	470.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr8	103850896	rs62522602	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr8	103855691	rs2304344	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr8	104053283	rs1512351	G	T	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:97,96:0.50:193
chr8	104054513	.	G	GT	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=4.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-2.001;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:98,21:0.18:119
chr8	104054526	rs3779908	A	T	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=2.602;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:66,65:0.50:131
chr8	104068281	rs72669344	A	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr8	104075165	.	C	CT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=-0.054;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:66,15:0.19:81
chr8	104076923	rs151079473	AT	A	1093.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:53,65:0.55:118
chr8	104081085	rs9992	G	C	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:133,175:0.57:308
chr8	104166902	rs35605502	G	GC	7477.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr8	104331088	rs3104026	G	C	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	104336672	rs827550	G	A	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	104340719	rs2270525	T	C	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	104343822	rs2934725	A	G	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	104388288	rs72124849	TAAAAA	T	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr8	104390224	rs2687364	T	A	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:103,132:0.56:235
chr8	104394631	rs3098232	A	G	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:52,68:0.57:120
chr8	104394744	rs3098233	T	C	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:227,160:0.41:387
chr8	104412935	rs2241778	C	T	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,46:0.53:87
chr8	104415637	.	TAAA	T	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=4.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.207;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:15,8:0.35:23
chr8	104420100	rs3134254	T	C	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr8	104426904	rs10709873	CA	C	1224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.87;ReadPosRankSum=0.566;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:27,29:0.52:56
chr8	104426905	.	AAC	A	2290	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=4;MGOF=3;MMLQ=28;MQ=59.52;NF=22;NR=2;PP=2290;QD=97.5116786348;SC=CGCGGACAGCAACGCTCCCTT;SbPval=0.78;Source=Platypus;TC=50;TCF=44;TCR=6;TR=24;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:26,24:0.48:50
chr8	104426907	rs367610017	CG	C	1252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.758;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.23;ReadPosRankSum=-1.488;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:27,32:0.54:59
chr8	104426908	.	GCT	CCC	2287	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=4;MGOF=3;MMLQ=28;MQ=59.6;NF=25;NR=2;PP=2287;QD=86.6839953653;SC=GGACAGCAACGCTCCCTTCAA;SbPval=0.85;Source=Platypus;TC=63;TCF=55;TCR=8;TR=27;WE=104426918;WS=104426900;set=Platypus	GT:AD:AF:DP	0/1:36,27:0.43:63
chr8	104426910	rs114156661	T	C	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.03;ReadPosRankSum=-1.867;SOR=1.283;set=HC	GT:AD:AF:DP	0/1:27,33:0.55:60
chr8	104427359	rs3134295	A	C	8163.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	0/1:403,384:0.49:787
chr8	104427541	rs3134296	C	T	8821.77	.	AC=1;AF=0.500;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	0/1:346,416:0.55:762
chr8	104427578	rs3134297	T	C	6269.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:226,284:0.56:510
chr8	104432545	rs3134253	A	G	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:191,197:0.51:388
chr8	104439629	rs72675468	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-0.484;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr8	104442666	rs7816297	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr8	104445009	rs1370005	T	G	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr8	104452554	rs36073721	A	ATAT	493.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr8	104452621	rs58480092	TAAAA	T	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr8	104454009	rs59392618	C	CT	540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.449;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.760;QD=8.45;ReadPosRankSum=0.924;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:24,40:0.62:64
chr8	104454794	rs3098214	A	C	229.22	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr8	104513343	rs35745796	C	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:51,63:0.55:114
chr8	104513395	rs36056848	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr8	104709594	rs1176674	A	G	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:34,48:0.59:82
chr8	104892734	rs76209418	A	G	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr8	104922519	rs112118632	C	CT	913.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.294;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.983;QD=6.35;ReadPosRankSum=-0.431;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:73,71:0.49:144
chr8	104934028	rs6468897	G	A	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:148,164:0.53:312
chr8	105261119	.	TTC	T	165.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,12:0.21:57
chr8	105261161	rs3072636	A	AT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.389;QD=7.03;ReadPosRankSum=-1.586;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr8	105261725	rs2028945	G	A	3383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.509;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:144,166:0.54:310
chr8	105263751	rs2252152	T	A	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr8	105263979	rs10461	C	T	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:220,180:0.45:400
chr8	105264087	rs34085789	C	CAA	1048.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.939;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.28;ReadPosRankSum=-0.595;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:78,89:0.53:167
chr8	105367096	rs2458431	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr8	105368408	rs4734780	A	G	3664.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:284,190:0.40:474
chr8	105393687	rs2253336	G	A	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	105440462	rs2246815	A	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr8	105459793	rs7821992	C	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr8	105479134	rs182332679	C	T	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.34;ReadPosRankSum=1.860;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:141,171:0.55:312
chr8	105479149	rs2959023	A	G	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr8	105503818	rs201824078	T	TA	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.235;QD=3.09;ReadPosRankSum=0.374;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr8	105601151	rs181400319	G	A	4641.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=0.086;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:268,229:0.46:497
chr8	105601176	rs9694676	A	G	4394.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:172,202:0.54:374
chr8	105601192	.	A	ACGC	2237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=2.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=1.738;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:100,98:0.49:198
chr8	105601198	rs188974664	A	C	11561.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr8	105845706	rs145596017	T	TTTTTTTTC	1433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-1.542;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:50,38:0.43:88
chr8	105845742	rs1380689	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.491;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr8	105845812	rs1380688	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr8	105907461	rs2290865	G	T	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	105907786	rs3214884	GT	G	6568.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	105907833	rs2290866	C	T	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	106258798	rs146080779	CAT	C	630.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr8	106331094	.	G	GGCGGCGGGA	2421.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=4.944;MLEAC=1;MLEAF=0.500;MQ=62.42;MQRankSum=5.023;QD=23.74;ReadPosRankSum=-2.859;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:43,59:0.58:102
chr8	106431029	rs11783971	A	G	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr8	106573524	rs3832566	CA	C	1104.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,55:0.56:98
chr8	106573578	rs3735953	C	T	5597.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr8	106628731	rs13281515	A	G	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:67,59:0.47:126
chr8	106628892	rs71303450	C	CAAT	1367.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr8	106628965	rs1817023	T	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr8	106646322	.	TA	T	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.980;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr8	106646683	rs4734883	A	T	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr8	107704940	.	TA	T	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=1.566;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.638;QD=0.99;ReadPosRankSum=-0.622;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:133,41:0.24:174
chr8	107754473	rs1681904	G	A	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr8	107754583	rs1784468	T	G	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr8	107757885	rs1681905	G	A	87.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	107773675	rs36024019	T	C	2501.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:138,121:0.47:259
chr8	108315277	rs4472483	T	G	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr8	108315599	rs149628829	C	CA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.244;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr8	108970264	rs3039298	T	TCA	6905.73	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:166,178:0.52:344
chr8	108970336	rs34627831	G	A	5719.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:342,285:0.45:627
chr8	108970367	rs601558	A	G	7703.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:349,389:0.53:738
chr8	109009081	rs1369068	T	C	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr8	109215368	rs630492	T	C	4464.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:192,218:0.53:410
chr8	109215910	rs617285	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr8	109229529	rs11358208	TA	T	142.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr8	109240695	rs596747	T	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr8	109245991	rs612744	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr8	109246032	rs587340	C	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.763;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=0.706;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr8	109247189	rs3075616	CA	C	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.36;ReadPosRankSum=1.050;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr8	109254262	rs615233	C	T	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr8	109254677	rs627392	C	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr8	109260776	rs4735053	A	G	17864.77	.	AC=1;AF=0.500;AN=2;DB;DP=1678;set=Intersection	GT:AD:AF:DP	0/1:783,892:0.53:1675
chr8	109455802	rs3737501	G	A	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr8	109455863	rs3737502	C	T	2384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=2.081;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:225,130:0.37:355
chr8	109462791	rs4540386	A	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	109468230	rs10646253	T	TAGAA	1304.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	109488937	rs1871685	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	109491399	rs2252767	A	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	109498656	rs10111934	T	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	109498717	rs34429579	C	CTTT	1244.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=25.93;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:8,40:0.83:48
chr8	110447512	rs142972518	G	C	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=-2.273;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:127,82:0.39:209
chr8	110460355	rs370609517	CT	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-1.439;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:186,48:0.21:234
chr8	110535444	rs10573846	CT	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.909;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:88,27:0.23:115
chr8	110575806	.	CT	C	224.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.927;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=2.162;QD=5.11;ReadPosRankSum=-1.667;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr8	110620037	rs9297430	T	TCACA	486.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:49,19:0.28:68
chr8	110657514	rs3108849	G	A	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:198,142:0.42:340
chr8	113241088	rs1592624	T	G	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=0.194;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:78,40:0.34:118
chr8	113254070	rs371891542	TGC	T	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.948;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=-0.981;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chr8	113254071	.	GCGCA	G	640	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=23;MQ=60.0;NF=0;NR=17;PP=640;QD=39.1764705882;SC=ACATACACATGCGCACACACA;SbPval=1.0;Source=Platypus;TC=44;TCF=1;TCR=43;TR=17;WE=113254095;WS=113254061;set=Platypus	GT:AD:AF:DP	1/0:27,17:0.39:44
chr8	113254085	.	ACG	A	439.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=-1.537;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr8	113254087	rs28698529	G	A	340.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=1.725;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr8	113259132	rs1895014	A	T	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr8	113266343	rs7830950	C	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:75,47:0.39:122
chr8	113267771	rs1861753	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr8	113301548	rs1861755	A	G	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr8	113308243	rs4876462	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr8	113363350	rs7003308	T	C	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.457;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:48,39:0.45:87
chr8	113363511	rs7003500	T	C	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=0.509;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:62,50:0.45:112
chr8	113364574	rs11775013	T	C	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.18;ReadPosRankSum=-0.728;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:39,54:0.58:93
chr8	113364696	rs11778209	A	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:85,56:0.40:141
chr8	113396054	rs16883506	A	T	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr8	113420495	rs35988509	TG	T	3665.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr8	113485014	rs11783041	A	C	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr8	113516209	rs10955625	G	A	2047.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:22,101:0.82:123
chr8	113529553	rs67362344	T	A	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr8	113585637	rs7014796	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr8	113599196	rs7463547	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr8	113599207	rs7460155	A	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:7,19:0.73:26
chr8	113655596	rs10505169	A	G	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr8	113655643	rs112584207	A	AC	1112.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:47,31:0.40:78
chr8	113655644	rs55980973	A	T	1121.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr8	113655752	rs10505168	T	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=4.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-0.524;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:43,36:0.46:79
chr8	113662299	rs6992564	T	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr8	113697567	rs7839990	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:31,30:0.49:61
chr8	113842039	rs10106945	G	A	11169.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:141,471:0.77:612
chr8	113842114	rs140103189	GCACACACA	G	855.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.375;QD=21.94;ReadPosRankSum=-3.310;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr8	114111250	rs2030506	G	T	854.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.551;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.001;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:170,53:0.24:223
chr8	114186003	rs2219898	T	C	4238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=-0.378;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:214,210:0.50:424
chr8	114290825	rs17608189	G	A	3093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.654;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=0.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-0.773;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:226,165:0.42:391
chr8	114388945	rs17609383	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:178,163:0.48:341
chr8	114448786	rs10682578	C	CCTT	1975.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	114612541	rs75276045	G	A	5498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=4.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.89;ReadPosRankSum=-0.242;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:201,145:0.42:346
chr8	114612541	.	GGA	AGC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=77;NR=64;PP=2944;QD=20;SC=CTGTTTTCCAGGAATCTCATA;SbPval=0.38;Source=Platypus;TC=334;TCF=193;TCR=141;TR=141;WE=114612551;WS=114612531;set=Platypus	GT:AD:AF:DP	1/0:193,141:0.42:334
chr8	114612543	rs4242557	A	C	5498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=4.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-0.275;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:203,148:0.42:351
chr8	116504323	rs800883	A	T	11500.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:1,414:1.00:415
chr8	117669343	rs77386399	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=-1.785;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:634,92:0.13:726
chr8	117709575	rs12541272	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.746;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.979;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:66,10:0.13:76
chr8	117749358	rs77803704	T	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.225;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:124,28:0.18:152
chr8	117749535	rs11284390	GA	G	378.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.981;QD=1.06;ReadPosRankSum=0.069;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:285,73:0.20:358
chr8	117782385	rs4514005	C	T	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	117791733	rs979866	T	C	58243.77	.	AC=2;AF=1.00;AN=2;DB;DP=2202;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,2191:1.00:2191
chr8	117799012	rs1867840	A	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	117864952	.	T	TA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.449;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:165,43:0.21:208
chr8	118183499	rs79891351	G	A	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:9,58:0.87:67
chr8	118819578	rs7837891	C	T	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.709;ClippingRankSum=0.000;DB;DP=1101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-1.102;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:951,146:0.13:1097
chr8	118825354	rs4382503	C	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.448;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:73,11:0.13:84
chr8	118830820	rs10955837	T	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr8	118847782	rs11546829	G	A	5682.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:36,250:0.87:286
chr8	119209773	rs2514743	C	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:54,84:0.61:138
chr8	119296422	rs721816	A	C	4484.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:97,194:0.67:291
chr8	119391791	rs5020517	T	C	24521.77	.	AC=2;AF=1.00;AN=2;DB;DP=932;set=Intersection	GT:AD:AF:DP	1/1:0,928:1.00:928
chr8	119391866	rs12171673	G	A	6065.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:168,278:0.62:446
chr8	119451983	rs34337924	ATGT	A	547.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,16:0.36:45
chr8	119941173	rs3134046	A	G	7850.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr8	119964052	rs2073618	G	C	7137.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:398,353:0.47:751
chr8	119964283	rs2073617	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,41:0.34:120
chr8	120079748	rs2465383	A	G	1337.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,57:0.55:104
chr8	120220775	rs71302978	CG	C	11336.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr8	120429024	rs2279112	G	A	3891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.229;ClippingRankSum=0.000;DB;DP=778;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.487;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:548,229:0.29:777
chr8	120569877	rs2305129	T	G	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.912;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:75,31:0.29:106
chr8	120577030	rs3816330	A	G	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=1.837;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:95,29:0.23:124
chr8	120580546	rs200158900	T	TA	725.84	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:7,40:0.85:47
chr8	120580640	rs2243749	G	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;MQ=61.43;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	120581643	rs12544233	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr8	120583148	rs2305125	G	A	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	120583185	rs2305126	T	C	772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.925;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=5.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.47;ReadPosRankSum=0.503;SOR=2.170;set=HC	GT:AD:AF:DP	0/1:8,28:0.78:36
chr8	120592482	rs2289887	G	A	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.789;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:261,106:0.29:367
chr8	120596023	rs10283100	A	G	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr8	120599487	rs2305128	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr8	120602908	rs935359	C	T	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.54;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	120602914	rs935360	C	T	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	120613747	rs2289888	C	T	12697.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr8	120613822	rs2289889	C	T	9833.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr8	120629555	rs3217556	AC	A	781.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:112,35:0.24:147
chr8	120629959	rs147305264	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr8	120631657	rs5894488	CA	C	834.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.017;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.912;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.446;QD=13.68;ReadPosRankSum=0.128;SOR=2.004;set=HC	GT:AD:AF:DP	1/1:6,55:0.90:61
chr8	120631699	rs79975070	T	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:30,9:0.23:39
chr8	120754645	rs4871569	A	G	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr8	120790304	rs1509348	T	C	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.116;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr8	120790378	rs35033415	G	GA	190.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr8	120793296	rs7002501	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr8	120795607	rs13268676	G	A	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.066;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:165,52:0.24:217
chr8	120801805	rs6469846	C	T	1600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=3.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.425;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:377,119:0.24:496
chr8	120802018	rs112562547	A	G	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr8	120803637	rs9297605	C	G	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.67;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	120803654	rs11996390	C	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:104,39:0.27:143
chr8	120805749	rs72688294	T	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr8	120814020	rs7813438	A	G	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.539;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.824;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:163,57:0.26:220
chr8	120816010	rs4871629	A	G	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.473;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.241;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr8	120818709	rs71571631	CTT	C	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.766;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=1.714;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr8	120847078	rs1055133	C	G	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.293;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr8	120847123	rs1055131	C	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.142;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.630;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.392;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr8	120847188	rs1055130	T	C	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr8	120862767	rs112349158	T	TA	1625.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr8	120886054	rs75781905	C	A	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr8	120886370	rs7840728	T	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr8	120941953	rs7007554	G	T	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:14,56:0.80:70
chr8	121013770	rs2271900	A	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,26:0.27:96
chr8	121019300	rs6469889	C	T	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr8	121061879	rs4871827	G	A	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=0.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=1.815;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:270,88:0.25:358
chr8	121180664	rs56122736	G	A	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr8	121209000	rs2305597	A	C	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:192,93:0.33:285
chr8	121210069	rs2305598	T	C	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.08;ReadPosRankSum=-1.703;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:302,94:0.24:396
chr8	121215991	rs2305600	T	C	636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.596;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:124,45:0.27:169
chr8	121220395	rs3765062	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-3.282;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr8	121226143	rs71571669	C	CT	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=1.565;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr8	121228679	rs4870723	A	C	2601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;ClippingRankSum=0.000;DB;DP=774;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.755;QD=3.38;ReadPosRankSum=0.870;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:580,189:0.25:769
chr8	121293142	rs35952226	CT	C	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.317;QD=1.00;ReadPosRankSum=0.438;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:72,23:0.24:95
chr8	121325997	rs117596624	A	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	121326427	rs10505379	G	T	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr8	121383048	rs4463470	T	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	121383082	rs6469922	A	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	121408195	rs6650	T	C	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr8	121426425	rs68086071	AGT	A	320.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	121455558	rs5894521	G	GA	1911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.641;QD=9.70;ReadPosRankSum=-0.375;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:70,127:0.64:197
chr8	121471361	rs6984090	A	G	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	121483196	rs13248998	G	A	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	121509825	rs35918868	C	CTTT	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	121530061	rs13258768	C	T	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr8	121530190	rs13258848	A	G	16201.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,611:1.00:611
chr8	121530384	rs34340354	CTT	C	3020.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	121531154	rs13269481	G	A	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	121587165	rs6984991	G	T	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr8	123683642	.	GA	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.367;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.062;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr8	123966159	rs3802265	G	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr8	124042733	rs2891672	T	C	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	124084909	rs2385160	G	C	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	124089526	rs13254600	C	A	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr8	124096315	rs4871346	C	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	124096721	rs4870845	A	G	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	124114560	rs10956117	T	C	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr8	124114583	.	A	AGTGGCATTTGCC	2957	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=24;MQ=60.0;NF=4;NR=33;PP=2957;QD=20;SC=GTGCATTTGGAGTGGCGTTTG;SbPval=0.26;Source=Platypus;TC=86;TCF=6;TCR=80;TR=37;WE=124114606;WS=124114573;set=Platypus	GT:AD:AF:DP	1/1:49,37:0.43:86
chr8	124114588	.	C	CATTT	6911.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.72;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	124114589	.	G	A	1179	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=26;MQ=60.0;NF=34;NR=84;PP=1179;QD=10.2861967165;SC=TTGGAGTGGCGTTTGCCACCT;SbPval=0.5;Source=Platypus;TC=119;TCF=34;TCR=85;TR=118;WE=124114606;WS=124114573;set=Platypus	GT:AD:AF:DP	1/1:1,118:0.99:119
chr8	124114589	.	G	GCCGTGGCA	6912.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=1.506;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	124114598	rs146629815	C	CT	2004.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr8	124121798	rs16897969	A	G	7239.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr8	124359749	rs9297666	C	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	124381445	rs5894661	G	GTA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=1.156;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr8	124440174	rs6999234	A	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	124440336	rs10628888	A	AAG	2241.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	124442114	rs71961566	TGTCTCAAAAAAAAAAAAAAAAAATCCC	T	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.884;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr8	124442187	rs13278992	A	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr8	124448689	rs9297669	T	C	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr8	124448736	rs7014678	A	G	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	124448804	rs6470147	T	A	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr8	124448907	rs10590897	CTT	C	2090.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	124448947	rs6470148	A	G	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	124449466	rs3824250	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	124449672	rs11991520	T	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	124449712	rs11987798	G	A	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	124449742	rs11987776	C	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	124450364	rs3765212	G	T	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	124450631	rs11992509	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	124453543	rs4416808	T	A	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr8	124453662	rs13269287	T	C	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr8	124453799	rs1045270	A	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	124518686	rs140223880	G	A	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	124658214	rs11779866	C	T	10023.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr8	124658404	rs11786734	A	G	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	124659329	rs11991744	C	A	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	124663769	rs10109736	A	T	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr8	124664130	rs11780509	C	T	9455.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr8	124664167	rs11784192	T	C	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr8	124664792	rs7387544	C	T	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr8	124664873	rs7387792	AT	GC	9500.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr8	124665211	rs7387855	C	T	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	124693410	rs4471017	G	C	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	124693444	rs3739283	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	124693641	rs4314634	G	A	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	124696867	rs2294015	C	T	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	124701193	rs55688638	C	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr8	124749610	rs6470179	C	T	10314.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr8	124749651	rs11331268	TC	T	10236.73	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr8	124787892	rs13253599	G	T	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	124789417	rs7012004	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	124797135	rs1367829	A	G	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr8	124817605	rs71576705	CT	C	823.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.282;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.636;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.408;QD=13.73;ReadPosRankSum=-0.567;SOR=0.428;set=HC	GT:AD:AF:DP	1/1:6,54:0.90:60
chr8	124824826	rs1946586	G	A	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	124982125	rs7008210	A	C,AC	1347.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=39.64;ReadPosRankSum=-1.381;SOR=1.347;set=HC	GT:AD:AF:DP	1/2:1,21,12:0.62,0.35:34
chr8	124982215	rs7008604	G	A	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr8	124985780	rs10102622	A	C	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	124987478	rs7465584	T	C	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	125033678	rs7820272	G	A	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	125035533	rs4521739	G	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	125035788	rs4358790	G	C	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr8	125047370	rs4871451	T	C	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	125051966	rs4269524	A	G	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	125052018	rs4389914	T	C	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:2,221:0.99:223
chr8	125061895	rs4870887	G	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr8	125072426	rs4483140	T	C	10297.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,391:1.00:391
chr8	125076589	rs7012186	T	G	2722.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	125076988	rs4871460	T	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr8	125088636	rs9643188	A	G	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	125094847	rs10956163	C	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	125107201	rs6470219	G	A	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr8	125107207	rs6470220	C	T	8719.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	125110258	rs10956164	C	T	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr8	125568162	rs12375359	A	G	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr8	125568181	rs141339886	TA	T	5357.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:13,211:0.94:224
chr8	125570144	rs4870903	G	A	970.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	125574913	rs7015228	G	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	125574925	rs7015374	G	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	125577869	rs2303952	C	G	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	125579788	rs3857944	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	125579973	rs6470251	C	T	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	125579990	rs6470252	C	T	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	125589956	rs7002655	A	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	125711670	rs11358821	TG	T	1610.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	125739749	rs891542	A	G	6036.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr8	126033090	rs182080432	G	T	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	126056215	rs11370883	G	GC	8035.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr8	126445505	rs13277396	G	C	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	128099242	rs13257371	C	A	20886.77	.	AC=1;AF=0.500;AN=2;DB;DP=1528;set=Intersection	GT:AD:AF:DP	0/1:570,955:0.63:1525
chr8	128099269	rs4571699	A	G	47767.77	.	AC=2;AF=1.00;AN=2;DB;DP=1786;set=Intersection	GT:AD:AF:DP	1/1:0,1780:1.00:1780
chr8	128099455	rs1840709	G	C	9575.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:229,395:0.63:624
chr8	128099457	rs61262194	CGTG	C	25319.73	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr8	128972721	rs9649959	A	G	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	131092026	rs6415509	T	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr8	131172968	rs10089819	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	131179873	rs55937708	GA	G	1653.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	131191633	rs61558949	C	T	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	131192905	rs28495072	G	C	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	131193153	rs71572332	T	TA	956.73	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr8	131199666	rs374655037	AT	A	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.192;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.89;ReadPosRankSum=-0.021;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr8	131353139	rs13265869	T	C	15369.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr8	131373887	rs10091130	C	G	13562.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr8	131413956	rs10090106	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	131414083	rs10090231	A	G	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	131414257	rs10090767	G	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	131792607	rs5895055	C	CAA,CAAA	1463.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;QD=29.27;SOR=1.426;set=HC	GT:AD:AF:DP	1/2:0,36,14:0.72,0.28:50
chr8	131848465	rs2259296	A	G	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	131859768	rs56309349	TA	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.200;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=4.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.778;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:88,47:0.35:135
chr8	131897082	rs4128982	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	131921956	rs12547243	A	G	17677.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:1,695:1.00:696
chr8	131922214	rs28416041	T	C	2445.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.17;SOR=2.001;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	131922214	.	TG	CA	2693	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=3;HapScore=1;MGOF=11;MMLQ=28;MQ=59.54;NF=15;NR=41;PP=2693;QD=20;SC=GACGGAGTTTTGCTCTGTCGC;SbPval=0.58;Source=Platypus;TC=58;TCF=16;TCR=42;TR=56;WE=131922223;WS=131922204;set=Platypus	GT:AD:AF:DP	1/1:2,56:0.97:58
chr8	131922215	rs55864148	G	A	2445.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=1.961;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	132002576	rs1329803	G	A	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr8	132966045	.	C	CT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=3.315;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=2.548;QD=2.11;ReadPosRankSum=2.123;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr8	133041177	rs6471024	G	A	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=45.14;SOR=1.906;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr8	133041179	rs6471025	A	G	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=42.83;SOR=1.945;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	133041242	rs6471026	C	G	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr8	133045480	rs2202068	C	T	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	133046927	rs6471028	T	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr8	133046977	rs7834841	A	G	7090.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr8	133048593	rs1472571	C	T	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr8	133048619	rs7461611	T	C	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr8	133049810	rs6992506	A	G	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	133050900	rs871959	A	G	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	133053188	rs2334791	C	T	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	133053309	rs7386782	T	C	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	133053318	rs7386783	T	C	7990.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.67;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	133053714	rs1466884	G	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	133067315	rs4736538	G	A	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	133089975	rs2280851	A	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	133101818	rs6471038	G	A	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	133107830	rs7833441	T	C	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr8	133107893	rs10956634	A	G	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr8	133111307	rs2469493	C	G	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr8	133112392	rs1370568	G	A	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	133113531	rs34842500	A	T	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	133116251	rs6998880	C	T	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	133117603	rs71526236	G	A	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr8	133146798	rs111447844	TGAGGA	T	535.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=41.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	133175971	rs893391	G	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	133184644	rs3049340	TAC	T	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.845;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.177;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr8	133192595	.	A	T	1307.77	.	AC=1;AF=0.500;AN=2;DP=207;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr8	133492917	.	A	ACC	347.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.13;MQRankSum=0.671;QD=28.93;ReadPosRankSum=-0.727;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr8	133634814	rs2272681	C	T	11326.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr8	133637659	rs2293979	G	A	9100.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr8	133700036	rs3857933	T	C	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	133723166	rs1895807	A	G	6647.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	133734455	rs60723518	C	CAA	391.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.62;ReadPosRankSum=0.347;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr8	133740259	rs201428959	AGT	A	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;QD=27.95;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	133764263	rs2467986	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	133764321	rs1469265	G	A	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr8	133769625	rs11778229	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	133770869	rs11314346	AT	A	269.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr8	133880334	rs180203	T	C	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	133885554	rs180210	T	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	133947859	rs2739062	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr8	133983955	rs72727453	A	G	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr8	133984814	rs150963971	G	GT	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.510;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr8	133984821	rs1554541	G	T	1208.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.998;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.112;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.11;ReadPosRankSum=1.875;SOR=0.189;set=HC	GT:AD:AF:DP	1/1:2,41:0.95:43
chr8	133985019	rs1403488	G	A	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	133985059	rs1403487	A	G	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	133985115	rs1403486	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	133995475	rs10105779	A	G	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr8	134006813	rs1533909	C	A	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	134024462	rs7827593	G	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	134025781	rs10105991	A	T	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	134025781	.	AGA	TGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=24;MQ=60.0;NF=75;NR=49;PP=2947;QD=20;SC=GATGACTGGAAGAATGCATGA;SbPval=0.57;Source=Platypus;TC=128;TCF=76;TCR=52;TR=124;WE=134025791;WS=134025771;set=Platypus	GT:AD:AF:DP	1/1:4,124:0.97:128
chr8	134025783	rs10105992	A	G	6432.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.017;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	134050678	rs3739266	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	134052217	.	CACACACAT	C	163.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.46;MQRankSum=-0.812;QD=1.16;ReadPosRankSum=1.647;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:121,20:0.14:141
chr8	134052219	rs113099362	CACACAT	C	2845.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.46;MQRankSum=0.589;QD=20.62;ReadPosRankSum=-0.779;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:34,104:0.75:138
chr8	134062912	rs2252807	A	G	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	134062983	rs2252805	C	T	7040.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr8	134107223	rs2272706	A	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	134107618	rs10103453	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	134108295	rs10106820	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	134108546	rs2069569	T	C	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr8	134114716	rs733735	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr8	134125650	rs72433148	C	CT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.062;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:134,30:0.18:164
chr8	134129130	rs11340734	TA	T	207.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	134143910	rs17633144	A	G	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	134144113	rs2294024	C	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	134225396	rs55733525	T	TC	15319.73	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr8	134225434	rs13258091	T	C	9630.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr8	134239770	rs3739261	T	C	6323.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr8	134251449	rs2929976	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	134258711	rs2233339	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	134262532	rs2272648	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	134270468	.	CCA	C	160	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=25;MQ=59.73;NF=12;NR=1;PP=160;QD=12.7692307692;SC=TACCCATGCACCACACACACA;SbPval=0.83;Source=Platypus;TC=53;TCF=46;TCR=7;TR=13;WE=134270477;WS=134270458;set=Platypus	GT:AD:AF:DP	1/0:40,13:0.25:53
chr8	134274226	rs2233324	C	G	19731.77	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,750:1.00:750
chr8	134292288	rs2977507	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	134308937	.	G	GACAC	448.73	.	AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.92;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	134314369	rs2976580	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	134474148	rs1048479	C	T	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr8	134488007	rs2230542	G	A	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr8	135577530	rs6999469	G	A	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	135577533	rs6988653	T	G	6940.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.78;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr8	135600716	rs894358	C	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	135602581	rs3739425	A	G	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	135612595	rs894343	A	G	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	135612745	rs894344	A	G	9895.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr8	135613624	rs894347	A	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	135614705	rs3739423	A	G	9147.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr8	135614972	rs3739422	A	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	135620894	rs3739421	T	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	135622640	rs2277138	T	C	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr8	135725058	rs71528372	C	T	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,103:0.99:104
chr8	136303364	rs77317861	A	G	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	136306291	rs4344113	G	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr8	136560952	rs12545587	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr8	136561153	rs11166602	A	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	136657198	rs4243846	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	136657534	rs4373553	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	136659195	rs28621864	C	T	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	136659426	rs3184618	G	A	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	139269052	rs1512403	A	G	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	139321179	rs6577909	A	G	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	139323246	rs56096441	A	G	231.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	139380103	rs370836089	AAC	A	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.497;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.412;QD=1.31;ReadPosRankSum=-0.648;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:66,14:0.17:80
chr8	139614436	rs4394401	G	A	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr8	139614582	rs6993225	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	139617046	rs12546923	A	C	4878.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr8	139618754	rs4471041	T	C	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr8	139620049	rs12681582	T	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	139620267	rs11166829	G	A	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr8	139626176	rs7000261	C	G	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	139631650	rs7009396	A	G	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	139635883	rs7836250	A	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr8	139635920	rs7839790	T	A	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	139638307	rs3924860	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr8	139647262	rs10091563	A	G	4689.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr8	139648892	rs11166830	G	A	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	139658747	rs4909439	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	139668032	rs11166832	T	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	139668300	rs12675091	C	T	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	139672602	rs4072506	T	C	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	139672671	rs3935045	T	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr8	139672708	rs117256395	G	C	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr8	139674213	rs11780732	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	139675869	rs11166835	G	T	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr8	139676082	rs4410946	A	G	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	139688697	.	A	AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGG	1353.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.581;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;MQRankSum=0.000;QD=23.75;ReadPosRankSum=-1.564;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr8	139696635	rs4506262	T	C	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr8	139697478	rs9644500	T	C	5920.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr8	139712323	rs4909835	A	G	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	139727808	rs5895555	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.361;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.150;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,16:0.32:50
chr8	139734462	rs12678237	T	C	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	139736649	rs28726333	C	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	139736933	rs10112806	C	A	7041.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	139749638	rs4409435	T	C	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	139774831	.	GCA	G	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.367;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=-0.074;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:87,13:0.13:100
chr8	139823922	rs2318332	C	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr8	139824057	rs10101430	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.90;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	139825393	rs6577951	A	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	139838912	rs2292927	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	139845520	rs6993839	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	139889972	rs4736255	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	140630990	rs2615374	A	G	10667.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr8	141034189	rs9792174	A	T	3262.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.153;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.64;ReadPosRankSum=2.173;SOR=0.461;set=HC	GT:AD:AF:DP	1/1:12,173:0.94:185
chr8	141297613	rs6999767	T	C	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	141301003	rs62527544	A	T	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	141557497	rs2292782	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	141559358	rs2292781	G	A	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr8	141561393	rs2292779	G	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr8	141565892	rs4961270	A	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr8	141566311	rs2271738	C	T	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	141566487	rs2271736	G	A	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	141568622	rs2292778	G	A	11202.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr8	141568699	rs2292777	A	G	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	141568725	rs2292776	G	A	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr8	141572497	rs2292774	GG	AA	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	141583108	rs34527405	ATT	A	1576.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.457;QD=21.90;ReadPosRankSum=-0.144;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:9,63:0.88:72
chr8	141669818	rs3835176	AT	A	1533.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr8	141670907	rs9324530	C	A	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	141679817	rs10283368	T	C	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	141685506	rs13249806	T	C	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr8	141685641	rs6998337	C	A	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr8	141685774	rs13278258	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	141799379	.	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=1.092;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chr8	141994240	rs13258775	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.95;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	141994271	rs13250222	CA	AC	529.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.32;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	141994297	rs4961311	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	141994393	rs11781807	T	G	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	142146708	rs307772	T	C	8665.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,338:1.00:338
chr8	142152442	rs307765	A	G	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr8	142160829	rs35212078	T	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr8	142161064	rs3816063	C	T	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	142166214	rs555399	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	142168337	rs59830378	C	T	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr8	142173356	rs428300	C	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	142173689	rs2369612	A	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.46;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr8	142176280	rs2241735	G	A	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	142176507	rs412706	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	142185580	rs12675070	G	A	4905.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	142185718	rs307733	T	C	6758.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr8	142186573	rs307732	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr8	142191032	rs2278448	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	142200205	rs144741369	T	TCATGTTTG	1433.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr8	142200467	rs1045303	G	A	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	142202847	rs28446884	G	A	13563.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr8	142202856	rs6990186	C	T	13358.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr8	142202884	rs7014062	T	C	9017.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr8	142204326	rs1045248	C	G	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr8	142266691	rs7002500	A	C	6156.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr8	142367246	rs36092215	G	A	7777.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr8	142367335	rs10875472	T	C	7892.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr8	142367400	rs11167054	G	A	10057.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr8	142367559	rs11785629	G	A	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr8	142368150	rs7388121	T	G	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.21;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	142368156	rs7388122	T	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr8	142451177	rs7459842	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	142458039	rs72685417	C	T	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	142459814	rs7003306	C	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	142459859	rs62522537	G	A	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	142476424	rs28710266	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	142476424	.	GCG	ACA	1665	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=27;MQ=60.0;NF=24;NR=17;PP=1665;QD=41.9138506064;SC=GTGGGCCATGGCGGGGGCAGA;SbPval=0.51;Source=Platypus;TC=42;TCF=25;TCR=17;TR=41;WE=142476434;WS=142476414;set=Platypus	GT:AD:AF:DP	1/1:1,41:0.98:42
chr8	142476426	rs28663233	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.68;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	142476474	rs28525328	T	C	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr8	142476555	rs28439396	A	G	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	142476566	rs201252006	C	T	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	142476611	rs28504323	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	142477468	rs377007139	GCCC	G	1402.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=43.84;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	142477472	rs370101118	TTCCTGGC	T	1435.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=44.87;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	142477479	.	C	T	705	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5005;HP=2;HapScore=1;MGOF=175;MMLQ=18;MQ=59.8;NF=27;NR=6;PP=705;QD=22.4173094711;SC=CCCTTCCTGGCCCAGCCCCAG;SbPval=0.53;Source=Platypus;TC=34;TCF=28;TCR=6;TR=33;WE=142477498;WS=142477469;set=Platypus	GT:AD:AF:DP	0/1:1,33:0.97:34
chr8	142477490	rs73713679	C	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr8	142477517	rs79788097	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr8	142477553	rs73713680	T	C	5018.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=46.47;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr8	142477563	rs73713681	C	T	6721.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=49.06;SOR=1.122;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr8	142477588	rs74908317	C	T	9240.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=46.91;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	142477592	rs76586547	G	A	9389.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=45.36;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	142477614	rs72685432	C	T	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.08;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr8	142477752	rs11775650	T	C	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	142477771	rs72685433	C	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr8	142480610	rs4907398	C	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	142483063	rs4442176	C	T	3062.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.824;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=2.848;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:2,118:0.98:120
chr8	142484144	rs2126099	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	142484366	rs33975024	A	AG	7181.73	.	AC=2;AF=1.00;AN=2;DB;DP=201;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	142487856	rs11779508	A	G	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr8	142488662	rs2613643	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	142488837	rs12547980	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	142489981	rs2748417	C	T	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	142490079	rs2613641	G	A	8279.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr8	142490120	rs2748416	G	T	7306.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr8	142490166	rs7838192	C	T	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr8	142505038	rs6578193	T	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr8	142505056	rs2246587	T	C	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	142505578	rs2748404	C	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr8	142506461	rs2613637	A	G	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	142517130	rs11464845	T	TG	1299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.40;ReadPosRankSum=0.886;SOR=1.429;set=HC	GT:AD:AF:DP	0/1:12,55:0.82:67
chr8	142528250	rs79124969	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	142528260	rs72614018	G	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.35;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	143257568	rs73375434	A	G	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr8	143257795	rs7007430	G	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	143352978	rs11777062	T	G	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	143365913	rs5895710	GT	G	3384.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	143382124	rs140537326	G	GGACGATCTGGGTCTGAGGC	2005.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=3.564;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	143425271	rs67990630	C	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr8	143425720	rs10100935	T	C	6764.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr8	143427178	rs33970858	C	G	16698.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:1,631:1.00:632
chr8	143436034	rs7814359	A	G	9864.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr8	143447503	rs7388487	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr8	143546381	.	TGGGCAGACAGGGGAGGC	T	599.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	143556790	rs55875009	G	A	11386.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr8	143559757	rs111988863	T	C	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	143599631	rs13281622	A	G	11893.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.323;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr8	143599634	rs13254098	T	G	11836.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.42;SOR=1.338;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr8	143599651	rs13281652	A	C	5265.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr8	143599665	rs13254123	T	C	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	143599704	rs13281694	A	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	143599716	rs13278828	G	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	143599734	rs13281922	A	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	143599746	rs13281935	A	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	143599753	rs13281945	A	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	143603269	rs7463713	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	143603318	rs7462471	C	T	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	143603418	rs7460600	G	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	143614623	rs13269567	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr8	143614641	rs13272804	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr8	143620570	rs7387853	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	143620822	rs7388198	T	C	7992.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	143684655	rs58986836	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	143694775	rs28686812	G	C	9600.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr8	143696749	rs28660666	G	A	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	143740167	rs1056012	A	G	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	143746050	rs2976399	C	T	10299.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr8	143746069	rs3735999	T	C	11109.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr8	143746087	rs33951456	CCA	C	16627.73	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:1,425:1.00:426
chr8	143746416	rs754957	A	G	7863.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr8	143746701	rs3802232	A	G	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr8	143747271	rs2978973	C	G	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr8	143761931	rs2294008	C	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	143762135	rs2920279	A	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	143762932	rs2976392	G	A	8263.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr8	143763043	rs2920298	A	G	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	143763259	rs71514093	T	TG	1652.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	143763490	rs2978982	T	C	13128.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr8	143763547	rs1045531	C	A	10752.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr8	143763618	rs2976393	C	G	25592.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,563:1.00:563
chr8	143763622	rs2976394	C	T	25675.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,581:1.00:581
chr8	143763690	rs10216533	G	A	19615.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,739:1.00:739
chr8	143763750	rs2976395	G	A	34465.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.08;SOR=1.304;set=HC	GT:AD:AF:DP	1/1:0,800:1.00:800
chr8	143763757	rs1045547	T	G	34576.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,801:1.00:801
chr8	143763958	rs1045574	G	A	8508.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr8	143764001	rs2976396	G	A	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr8	143764101	rs1045605	C	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	143783115	rs116956821	C	T	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr8	143823858	rs2572914	C	G	9343.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr8	143831926	rs62525593	G	A	6950.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr8	143832014	rs117396768	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr8	143832373	rs10808680	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	143833850	rs11775636	G	A	20088.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.44;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,452:1.00:452
chr8	143833856	rs11778314	C	T	19566.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.57;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr8	143845982	rs1075542	T	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	143849626	rs7006366	T	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr8	143857265	rs2585125	G	T	9990.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:1,381:1.00:382
chr8	143857441	rs3214637	A	AGG	2689.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	143867841	rs2717607	C	G	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	143959067	rs80101721	G	A	242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.453;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.939;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.944;QD=6.94;ReadPosRankSum=0.636;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr8	143959174	rs75717953	T	C	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=11.327;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-0.960;QD=0.52;ReadPosRankSum=1.838;SOR=2.079;set=HC	GT:AD:AF:DP	0/1:144,19:0.12:163
chr8	143994427	rs6394	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr8	143994944	rs13252628	T	G	8433.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr8	143994978	.	CAAA	C,CAA	9036.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=220;set=Intersection	GT:AF:DP	1/1:1.00:201
chr8	143994981	.	AA	CG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=4;HapScore=1;MGOF=15;MMLQ=23;MQ=60.0;NF=56;NR=103;PP=2947;QD=20;SC=CCCTGAGCAAAAACAGAGCCC;SbPval=0.47;Source=Platypus;TC=163;TCF=56;TCR=107;TR=159;WE=143994990;WS=143994968;set=Platypus	GT:AD:AF:DP	1/1:4,159:0.98:163
chr8	143994982	.	A	ACG	9036.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	143995761	rs4536	C	T	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr8	143997309	rs13257680	C	T	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.29;QD=25.93;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr8	143997795	rs11781816	C	T	10250.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr8	143998426	rs13268153	C	T	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	143998662	rs13276226	G	A	16898.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr8	144097453	rs13279735	A	G	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	144102493	rs11136286	C	T	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr8	144105026	rs147881012	TCCCGGTGTTCGGGC	T	3341.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr8	144105342	rs7823963	A	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	144124609	rs11136300	T	C	6952.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:2,270:0.99:272
chr8	144125727	rs6997455	T	A	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	144126244	rs4612316	T	C	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr8	144130550	rs12677862	C	G	2732.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr8	144162364	rs6993880	C	T	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	144239660	rs7007949	G	A	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr8	144239859	rs10109061	A	G	10490.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr8	144240257	rs9694368	C	G	10210.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr8	144295154	rs61747644	C	T	3600.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr8	144295321	rs13253453	C	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr8	144332012	rs6558339	T	C	6001.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr8	144351394	rs7819483	A	G	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	144351632	rs6558341	A	G	10029.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:2,389:0.99:391
chr8	144357975	rs2293924	C	T	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr8	144358302	rs1056146	C	T	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	144378868	rs7386259	A	G	14079.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr8	144397694	rs7815223	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	144399856	rs3215410	TC	T	1327.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	144400065	rs2272635	C	T	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	144403485	rs11544482	G	C	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr8	144406705	rs11544484	C	T	13097.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr8	144408616	rs3829019	G	A	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	144409934	rs35096181	C	A	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;MQ=60.21;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr8	144409938	rs11424162	A	AG	7450.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr8	144411759	rs3812436	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	144417051	rs2956274	A	G	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr8	144425247	rs7837655	C	A	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	144457678	rs72703712	G	A	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr8	144459231	.	C	CGT	2737.73	.	AC=2;AF=1.00;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr8	144459233	rs3889112	C	T	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr8	144459329	rs901760	C	T	3577.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr8	144460569	rs901762	G	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	144462169	rs3812440	A	G	19489.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:2,755:1.00:757
chr8	144463267	rs13275994	C	T	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr8	144463686	rs3817720	C	T	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	144511389	rs7386685	C	G	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr8	144511953	.	ATGGTGG	A,ATGG	19857.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.38;QD=40.53;SOR=0.832;set=HC	GT:AD:AF:DP	1/2:0,42,448:0.09,0.91:490
chr8	144511995	rs1872900	A	G	12179.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:4,462:0.99:466
chr8	144566969	rs2294119	C	T	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr8	144618379	rs11774857	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr8	144620183	rs4874147	T	C	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr8	144623574	rs2242093	T	C	14887.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr8	144623735	rs2242092	G	C	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr8	144636949	rs7844860	T	C	18562.77	.	AC=2;AF=1.00;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	1/1:0,725:1.00:725
chr8	144641753	rs4874151	A	C	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr8	144642178	rs11774948	T	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr8	144642596	rs7835865	T	C	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	144642626	rs7831485	A	G	5880.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	144642986	rs11136298	T	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr8	144643321	rs12541790	A	G	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr8	144644583	rs1349806	G	C	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr8	144644787	rs1377663	T	A	11485.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr8	144649550	rs7010602	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr8	144649601	rs13268196	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr8	144649625	rs10097556	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr8	144649690	rs13254590	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	144649968	rs13255489	C	T	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr8	144650510	rs11136301	G	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr8	144650547	rs11136302	G	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	144650550	rs10101426	T	C	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	144650925	rs13279011	A	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr8	144651554	rs6983410	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	144651576	rs7013931	C	G	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,14:0.93:15
chr8	144653011	rs11777527	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.95;SOR=4.834;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr8	144653218	rs4874152	A	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr8	144654249	rs10866911	G	A	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=1.350;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	144654255	rs4874153	A	G	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.242;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr8	144654582	rs4874154	C	A	22319.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,497:1.00:497
chr8	144654586	rs4874155	G	C	22550.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,496:1.00:496
chr8	144654594	rs4873803	G	T	21798.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=45.13;ReadPosRankSum=1.715;SOR=0.226;set=HC	GT:AD:AF:DP	1/1:1,482:1.00:483
chr8	144654693	rs4873804	G	C	9042.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr8	144657269	rs2290417	G	C	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr8	144658711	rs872935	G	A	8937.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,331:0.99:333
chr8	144659608	rs12678314	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	144660189	rs896953	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr8	144660523	rs4475500	A	G	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	144662353	rs1062391	G	A	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr8	144668590	rs11780087	T	C	160.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	144671244	rs4874160	C	A	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr8	144671685	rs6985081	G	C	10172.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr8	144671922	rs3812448	G	A	8833.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:2,330:0.99:332
chr8	144672541	rs751932	T	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	144681777	rs10282929	G	T	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr8	144688736	rs2242090	C	G	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr8	144689686	rs4874169	A	G	14855.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr8	144689914	rs11136305	C	T	7115.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;MQ=60.22;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr8	144689932	rs34360518	CACAT	C	10399.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr8	144690014	rs4874170	T	C	23169.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:0,855:1.00:855
chr8	144690886	rs10097337	A	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	144695867	rs6558377	A	G	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	144696203	rs4634659	T	C	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	144697041	rs1049832	A	G	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr8	144732026	rs3750203	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr8	144732363	rs4875017	T	C	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr8	144732418	rs4874084	A	G	7698.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr8	144772151	rs35228840	TG	T	4889.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	144774079	rs11136313	G	T	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=1.421;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	144774089	rs11136314	A	C	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr8	144774233	rs11785723	T	C	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	144775871	rs6987308	C	A	12515.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr8	144776109	rs11786757	A	G	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr8	144776713	rs7464270	A	C	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr8	144800004	rs12543136	G	A	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr8	144800552	rs6997797	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	144800891	rs4072747	C	G	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr8	144801243	rs12678428	C	T	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr8	144801347	rs5895782	AC	A	2900.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	144801681	rs11778657	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr8	144803616	rs11783357	C	T	16482.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr8	144808003	rs4875045	G	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	144808747	rs11136321	G	A	12249.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr8	144809804	rs13254035	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr8	144810970	rs11136322	C	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	144811338	rs9969600	C	G	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr8	144824898	rs7463016	A	C	9698.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:1,353:1.00:354
chr8	144825035	rs4074642	T	G	9016.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr8	144873666	rs9314416	G	C	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr8	144873779	rs9314417	G	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	144873997	rs6982642	A	C	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.69;ReadPosRankSum=-1.239;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,58:0.88:66
chr8	144874366	rs7461245	T	C	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr8	144874554	rs6991873	T	C	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr8	144885580	rs13281371	A	G	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr8	144886628	rs34099611	C	T	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr8	144887656	rs7830442	A	G	6859.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr8	144889172	rs10866915	A	G	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr8	144890873	rs10098508	A	T	12396.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,453:1.00:453
chr8	144894496	rs4875060	G	A	11470.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr8	144894641	rs4875061	C	T	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	144894702	rs11404566	C	CT	1374.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	144895553	rs13251492	G	A	9140.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr8	144900756	rs7833632	A	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr8	144904690	rs4875063	A	G	12079.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr8	144911360	rs7461986	A	G	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr8	144940069	rs35186960	C	CA	125.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr8	144940081	rs60421625	C	A	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	144940290	rs201976887	C	G	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.719;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-1.767;QD=1.24;ReadPosRankSum=1.105;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:661,116:0.15:777
chr8	144940300	rs4977191	G	A	16101.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:176,603:0.77:779
chr8	144940706	rs112377501	C	T	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=1161;ExcessHet=3.0103;FS=3.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-0.099;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:987,167:0.14:1154
chr8	144944161	rs35221054	C	T	8494.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr8	144944176	rs12542653	T	C	8817.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr8	144945792	rs13255110	T	C	7895.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr8	144946252	rs11136330	C	T	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr8	144946345	rs34753358	G	A	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr8	144946818	rs13260439	C	T	7240.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr8	144991629	rs146781600	C	T	12726.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr8	144995964	rs35139934	G	A	8483.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr8	145004546	rs11780911	G	A	9090.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr8	145066886	rs13277282	A	G	11785.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr8	145106938	rs60949781	GCC	G	8494.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr8	145107795	rs11136253	G	A	8821.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr8	145149823	rs13256214	G	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr8	145149860	rs6984764	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr8	145150101	rs11541475	T	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr8	145150832	rs7820984	A	G	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:2,227:0.99:229
chr8	145151665	rs200379271	TGGCAGTGGGCATGTGGAATACTTCTCC	TCAGTGGGCATGTGGAATACTTCTCC,T	10921.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=289;set=Intersection	GT:AF:DP	1/1:1.00:245
chr8	145151668	.	CAGTGGGCATGTGGAATACTTCTCCA	C	10883.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.450;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr8	145151693	.	A	C	2768	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=24;MQ=60.0;NF=44;NR=78;PP=2768;QD=20;SC=ATACTTCTCCACTACCCCCAG;SbPval=0.43;Source=Platypus;TC=135;TCF=46;TCR=89;TR=122;WE=145151701;WS=145151655;set=Platypus	GT:AD:AF:DP	1/1:13,122:0.90:135
chr8	145158446	rs12549149	C	T	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	145158503	rs11136254	G	T	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr8	145160646	rs11136256	T	C	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr8	145161823	rs11546144	G	A	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr8	145161896	rs13263342	T	C	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr8	145162598	rs10091401	G	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr8	145163414	rs4977196	C	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr8	145163647	rs4977195	T	C	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr8	145164617	rs13281660	G	T	3642.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	145164847	rs13250446	A	G	11937.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr8	145168298	rs5895787	T	TG	1443.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	145168611	rs7463214	A	G	4973.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	145168824	rs7836836	T	C	5929.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr8	145170440	rs12543080	A	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	145170704	rs13278106	A	T	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr8	145171003	rs4977193	G	C	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr8	145171201	rs1132230	A	G	13644.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr8	145223191	rs6982878	G	A	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr8	145223288	rs34819224	C	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr8	145223499	rs6558308	G	A	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr8	145234508	rs7842771	G	C	8967.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr8	145245631	rs6558318	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	145245647	rs13267392	C	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr8	145245944	rs10108542	A	G	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr8	145254159	rs7464776	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr8	145255553	rs6558320	C	G	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	145486792	.	GC	G	36	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=13;HapScore=2;MGOF=19;MMLQ=23;MQ=42.67;NF=0;NR=3;PP=36;QD=15.0;SC=AGGGTACACCGCCCCCCCCCC;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=3;WE=145486800;WS=145486782;set=Platypus	GT:AD:AF:DP	1/0:5,3:0.38:8
chr8	145533330	.	G	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.078;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=129.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-2.358;SOR=5.889;set=HC	GT:AD:AF:DP	0/1:83,18:0.18:101
chr8	145533334	.	G	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.219;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=102.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.45;ReadPosRankSum=-1.672;SOR=5.667;set=HC	GT:AD:AF:DP	0/1:88,16:0.15:104
chr8	145537367	.	T	C	1695.77	.	AC=2;AF=1.00;AN=2;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.54;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr8	145537369	.	C	G	1695.77	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.44;SOR=6.138;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr8	145537372	.	G	T	1571.77	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.29;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	145537374	.	G	C	1548.77	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.72;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr8	145550338	rs6599571	T	C	159.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr8	145557497	rs7013127	A	C	1228.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr8	145577824	rs880701	C	G	12489.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.22;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr8	145577829	rs880702	A	C	12076.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr8	145577999	rs2272664	T	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr8	145578296	rs2272663	A	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr8	145579949	.	G	GGCCGCT	6016.73	.	AC=2;AF=1.00;AN=2;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=48.92;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr8	145579951	.	A	ACC	6249.73	.	AC=2;AF=1.00;AN=2;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=48.83;SOR=1.224;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr8	145579954	.	G	GGCACGGCACAAGGGCCCCCACACCTCACGTGCCTGGCCACAACCCAGAACAA	9932.73	.	AC=2;AF=1.00;AN=2;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=77.00;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	145580535	rs61746974	C	G	10235.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr8	145580984	rs2272666	A	G	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr8	145581557	rs2280840	G	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr8	145582839	rs3817681	T	C	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	145603114	rs6599528	A	C	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr8	145617253	rs2977837	G	A	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr8	145617534	rs148509143	TGGGGGTGCAAGGTGA	T	3122.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr8	145617641	rs7813146	T	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=6.341;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr8	145617910	rs7843675	A	G	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr8	145620296	rs2280837	C	G	9506.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr8	145620661	rs149597313	C	A	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr8	145621556	rs2280836	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr8	145625283	rs2291135	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.434;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	145625524	.	GCCCCC	G,GC	1407.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=39.261;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.390;QD=28.73;ReadPosRankSum=1.490;SOR=7.167;set=HC	GT:AD:AF:DP	1/2:3,30,16:0.61,0.33:49
chr8	145638811	rs116260554	C	A	16104.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr8	145639106	rs2928381	C	T	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr8	145639320	rs736676	G	C	5863.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr8	145639521	rs4992316	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr8	145639726	rs2272662	T	C	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr8	145640411	rs2977838	A	G	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr8	145641328	rs17855765	C	T	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	145641564	rs2280839	T	G	7505.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	145642002	rs2280838	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr8	145651262	rs2272658	T	C	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr8	145652412	.	C	CGG	8079.73	.	AC=2;AF=1.00;AN=2;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr8	145654794	rs3862193	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	145660833	rs1010427	G	A	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr8	145663814	rs13255086	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr8	145665407	rs2229315	C	T	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr8	145665516	rs2306383	T	C	9261.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr8	145665637	rs2620650	A	G	4223.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr8	145665699	rs2721188	C	T	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr8	145665761	rs2229313	G	A	3822.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr8	145667405	rs2242264	C	G	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr8	145668042	rs741969	G	A	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr8	145677469	rs2245052	A	G	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	145677973	rs2256094	C	T	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr8	145678020	rs1871538	C	T	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr8	145689915	rs2721167	G	A	7238.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr8	145690308	rs2721166	C	T	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr8	145690348	rs2620644	G	A	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr8	145690396	rs2620645	A	C	6162.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr8	145691915	rs112422823	G	C	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr8	145692110	rs2306388	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr8	145692296	rs2250895	A	C	4635.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr8	145692385	rs2250891	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr8	145692812	rs2250779	C	T	15826.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr8	145693720	rs2250657	A	G	7768.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr8	145693900	rs182469517	G	T	1903.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.393;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.38;ReadPosRankSum=-0.603;SOR=3.940;set=HC	GT:AD:AF:DP	1/1:1,74:0.99:75
chr8	145697244	rs4925823	G	A	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr8	145699601	rs2721176	T	C	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr8	145723419	rs2721149	T	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr8	145737636	rs4925828	A	G	17839.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr8	145738581	rs67678060	TG	T	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=1.210;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr8	145738767	rs11342077	CG	C	22383.73	.	AC=2;AF=1.00;AN=2;DB;DP=619;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr8	145739218	rs13267993	A	G,T	665.77	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=26;set=Intersection	GT:AF:DP	1/1:1.00:24
chr8	145742514	rs2721190	A	G	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr8	145742716	rs2721189	C	A	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr8	145745182	rs2721172	T	C	12694.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr8	145754073	.	GCC	GC,G	136.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=13;set=Intersection	GT:AF:DP	1/1:1.00:6
chr8	145756170	rs873884	G	A	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr8	145771211	rs2721161	C	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr8	145773341	rs138155129	TCTG	T	12643.73	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr8	145806681	rs2620647	A	G	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr8	145830757	rs4541972	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr8	145830894	rs5895822	CT	C	8639.73	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr8	146028061	rs2958527	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	146029642	rs72699309	C	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr8	146032842	rs62531506	G	A	10971.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr8	146033347	rs2976653	T	C	5887.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr8	146036234	rs2958511	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr8	146203412	rs2979109	A	G	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr8	146221823	rs2978409	A	T	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	154795	rs2785333	T	C	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.696;MLEAC=1;MLEAF=0.500;MQ=56.89;MQRankSum=-10.006;QD=3.04;ReadPosRankSum=-1.850;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr9	214706	rs540473	G	C	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:76,152:0.67:228
chr9	215057	rs481905	T	C	3890.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:105,182:0.63:287
chr9	215269	rs636922	A	C	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:109,139:0.56:248
chr9	286593	rs529208	C	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.635;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:164,60:0.27:224
chr9	289481	rs34722895	C	CAT	6160.73	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:85,155:0.65:240
chr9	312124	rs2039045	T	C	5184.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:125,235:0.65:360
chr9	316998	rs2296824	C	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:73,117:0.62:190
chr9	317195	rs10813355	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr9	325811	rs3831138	T	TC	3277.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr9	325817	rs2360277	T	C	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr9	327938	rs2296825	G	C	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr9	328006	rs2296828	T	C	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:61,91:0.60:152
chr9	334337	rs10970979	A	G	2978.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:86,138:0.62:224
chr9	365574	rs35000707	CT	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.494;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:128,42:0.25:170
chr9	370244	rs913703	A	G	5475.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:121,255:0.68:376
chr9	370370	rs11515377	G	C	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:11,50:0.82:61
chr9	376122	rs10973003	C	T	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:13,40:0.75:53
chr9	376179	rs35724655	T	A	2187.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:43,94:0.69:137
chr9	377111	rs10814431	G	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:61,110:0.64:171
chr9	379641	rs10814493	A	G	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.833;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.65;ReadPosRankSum=-0.724;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr9	379641	.	ATC	GTT	1351	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=33;NR=3;PP=1351;QD=39.012996524;SC=CACCAAAACCATCTACCCTTC;SbPval=0.72;Source=Platypus;TC=57;TCF=51;TCR=6;TR=36;WE=379651;WS=379631;set=Platypus	GT:AD:AF:DP	0/1:21,36:0.63:57
chr9	379643	rs10814494	C	T	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.07;ReadPosRankSum=-0.402;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:20,49:0.71:69
chr9	379965	rs10758420	T	C	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	380035	rs11790531	G	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr9	382810	rs3739598	C	G	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr9	386559	rs12551444	A	C	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr9	390512	rs2297075	C	T	2962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.85;ReadPosRankSum=0.457;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:37,129:0.78:166
chr9	390636	rs10814649	A	G	2668.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:48,123:0.72:171
chr9	396712	rs2297076	T	A	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr9	396749	rs2297077	TC	GA	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr9	399275	rs3831174	A	AC	1445.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr9	406805	rs35423045	G	GC	685.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr9	407157	rs72543680	T	TA	332.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr9	407227	rs4741867	A	G	196.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr9	418317	rs62531902	G	C	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	421032	rs2297079	C	G	4371.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	421980	rs2297081	T	A	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr9	422157	rs10217719	T	C	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr9	429719	rs7854035	T	C	4209.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	432081	rs1329377	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	432140	rs34439675	CTT	C	2022.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:4,75:0.95:79
chr9	432330	rs7036567	C	G	8712.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr9	432503	rs7046598	T	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	433697	rs7020380	T	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	433708	rs7041371	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	433978	rs2360712	A	G	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	439102	rs10733508	G	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	439453	rs10758598	G	C	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	441827	rs10974467	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	441952	rs1887957	G	A	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	442030	rs1887958	C	T	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:115,125:0.52:240
chr9	446352	rs10814952	G	C	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	449700	rs2031946	G	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr9	450060	rs10121936	A	G	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	451957	rs181571163	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.388;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=6.831;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=14.63;ReadPosRankSum=1.911;SOR=1.769;set=HC	GT:AD:AF:DP	0/1:7,21:0.75:28
chr9	712060	rs4465020	G	C	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:159,68:0.30:227
chr9	712599	rs11789987	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:81,38:0.32:119
chr9	732704	rs12551595	T	A	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr9	732779	rs10815563	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr9	734665	rs142267604	C	CA	233.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=1.456;QD=4.33;ReadPosRankSum=-0.380;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr9	734679	rs10429625	G	T	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.292;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=7.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-0.401;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:54,23:0.30:77
chr9	735654	rs7872783	C	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr9	738238	rs2296052	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr9	740769	rs368007873	CTTTTTT	C	4767.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.638;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=3.744;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.488;QD=10.12;ReadPosRankSum=3.643;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:300,171:0.36:471
chr9	740972	rs7032867	G	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:71,55:0.44:126
chr9	741001	rs7027152	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr9	742342	rs10733535	A	G	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	842230	.	G	GTT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=-0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.86;ReadPosRankSum=-0.231;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr9	842315	rs56130013	AC	A	851.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	967981	rs279895	G	C	7166.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.207;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.258;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.45;ReadPosRankSum=0.976;SOR=0.416;set=HC	GT:AD:AF:DP	1/1:1,270:1.00:271
chr9	977556	rs279891	C	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr9	1056959	rs17641078	G	C	10412.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:244,461:0.65:705
chr9	1057294	rs72703239	C	A	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:44,92:0.68:136
chr9	1057318	rs9140	A	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:35,68:0.66:103
chr9	2039776	rs376509101	ACAG	A	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.125;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:258,32:0.11:290
chr9	2047083	.	CT	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.55;ReadPosRankSum=2.947;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr9	2058178	rs17530262	C	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr9	2073162	rs3737268	G	C	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:80,32:0.29:112
chr9	2073292	rs13288443	A	G	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.030;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:177,79:0.31:256
chr9	2073514	rs7864080	A	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:135,67:0.33:202
chr9	2073839	rs2066111	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr9	2088720	rs79654091	G	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr9	2101545	rs10738570	T	A	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=3.274;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:14,23:0.62:37
chr9	2103950	rs1986592	T	C	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr9	2116037	rs6601	G	A	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:108,156:0.59:264
chr9	2123639	rs3829070	T	C	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr9	2160736	rs149515618	TGA	T	1156.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr9	2161949	rs2274095	C	T	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:152,76:0.33:228
chr9	2170512	rs3793511	G	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	2182062	rs2281786	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	2622121	rs12379259	A	G	4397.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:95,198:0.68:293
chr9	2622146	.	A	ACGG	1060.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DP=323;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.192;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:155,69:0.31:224
chr9	2811505	rs2270888	G	A	9399.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr9	2820201	.	CA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.883;QD=2.38;ReadPosRankSum=0.503;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr9	2828765	rs2173904	C	G	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	2831149	rs2292000	A	C	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	2833267	rs10217194	T	C	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	2834094	rs184075081	A	G	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:153,94:0.38:247
chr9	3228700	rs643429	A	C	100.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	3262803	rs635647	T	C	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr9	3263224	rs633893	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	3324206	rs2274487	C	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr9	3330151	rs13299535	C	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr9	3344954	rs3012670	C	A	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr9	3829212	rs7029652	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-0.326;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr9	3855963	rs34461578	C	CA	9325.73	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr9	3879646	rs17692969	G	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=-0.101;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:115,61:0.35:176
chr9	3879693	rs4740742	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:34,58:0.63:92
chr9	3898509	rs10758532	A	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr9	3932283	rs535978	C	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	3932521	rs587571	T	C	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	4117713	rs927315	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:16,64:0.80:80
chr9	4118111	rs6415788	G	T	888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=4.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.58;ReadPosRankSum=0.533;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:80,55:0.41:135
chr9	4118208	rs806052	A	G	7758.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	4285986	rs10758591	G	C	9464.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr9	4490880	rs12002726	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	4544640	rs142903137	T	C	2870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=0.954;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:346,176:0.34:522
chr9	4544721	rs45518336	A	T	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:37,88:0.70:125
chr9	4564432	rs2228622	G	A	3989.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	4566210	rs7022772	A	C	7722.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr9	4572480	rs3780412	T	C	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	4617999	rs41302077	G	C	3719.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:99,173:0.64:272
chr9	4622303	rs10758637	T	C	898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.68;ReadPosRankSum=-1.560;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:14,21:0.60:35
chr9	4622312	rs10758638	T	C	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=6.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.06;ReadPosRankSum=-1.897;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr9	4625415	rs45463394	T	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:59,87:0.60:146
chr9	4627871	rs4742023	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr9	4628952	rs4742025	A	T	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr9	4629041	rs199719649	GAA	G	485.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr9	4629170	rs34533529	T	TAAAA	2190.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:33,55:0.62:88
chr9	4629273	rs4740792	G	A	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr9	4629296	rs4742026	A	C	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr9	4635525	rs2273900	A	G	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	4646363	rs301469	C	T	211.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr9	4655915	rs7869353	G	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.236;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr9	4661749	rs143968076	T	TCCAACTGCGGTTTTGCTTCAAGG	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr9	4661853	rs301489	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:119,58:0.33:177
chr9	4662065	rs301488	G	A	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:100,58:0.37:158
chr9	4662369	rs301487	A	C	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr9	4666069	rs60279350	A	ATCTT	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.864;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr9	4679906	rs2295964	A	G	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:63,133:0.68:196
chr9	4680014	rs2295965	A	G	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr9	4701841	rs71497545	GT	G	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr9	4706214	rs2181341	C	T	1451.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:21,60:0.74:81
chr9	4718667	rs465514	A	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr9	4722685	rs10758645	C	G	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:113,64:0.36:177
chr9	4793254	rs841990	G	A	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.923;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr9	4833436	rs463578	GC	AT	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	4834034	rs466547	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	4834299	rs2296769	T	G	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.811;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr9	4844507	rs295259	G	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	4850421	rs455864	C	G	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.37;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	4850436	rs462480	G	T	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	4860300	rs15583	A	G	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	5069837	rs7869668	G	A	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr9	5081780	rs2230724	G	A	488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.287;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:227,51:0.18:278
chr9	5090641	rs10974955	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr9	5122932	rs10815163	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,33:0.38:87
chr9	5335470	rs2273782	C	T	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.261;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.185;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:251,93:0.27:344
chr9	5335639	rs2146074	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr9	5467955	rs2297136	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:75,38:0.34:113
chr9	5557672	rs7854303	T	C	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	5732532	.	G	GT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.972;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:134,35:0.21:169
chr9	5738545	.	CT	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.001;QD=4.12;ReadPosRankSum=2.049;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:19,21:0.53:40
chr9	5892375	rs2233177	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:51,37:0.42:88
chr9	5892525	rs2233178	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:90,51:0.36:141
chr9	5923326	rs7045445	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr9	5929167	rs7029054	T	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:35,51:0.59:86
chr9	5968416	rs3739649	A	G	10526.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr9	5969249	rs10739080	A	G	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:68,131:0.66:199
chr9	5969517	rs7030731	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	5988333	rs2291055	C	T	2949.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.69;ReadPosRankSum=-0.334;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:3,127:0.98:130
chr9	6007122	rs77310481	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:161,88:0.35:249
chr9	6254694	rs7857724	A	C	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	6255881	rs1332290	T	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr9	6328947	rs3847262	T	C	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	6330915	rs1037885	G	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	6554844	rs2274874	G	C	2593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.001;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.222;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:384,166:0.30:550
chr9	6558693	rs41281773	T	C	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=0.746;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:182,105:0.37:287
chr9	6587454	rs7021684	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr9	6602352	rs118187583	G	T	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	6602374	rs12683330	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=0.775;QD=4.28;ReadPosRankSum=2.192;SOR=1.919;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr9	6606746	rs10975681	T	C	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:46,55:0.54:101
chr9	6610326	rs35374927	C	T	2339.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:68,100:0.60:168
chr9	6720859	rs13289146	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr9	6814821	rs62568862	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr9	6874931	.	TA	T	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.647;QD=3.87;ReadPosRankSum=1.435;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:44,40:0.48:84
chr9	6875054	rs12553688	A	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr9	6875085	rs60286758	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr9	6986267	rs912207	T	G	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr9	6986291	rs3750488	C	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr9	6990364	rs2760657	G	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=0.154;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr9	6990548	rs35634202	ATT	A	1177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.00;ReadPosRankSum=0.076;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:13,49:0.79:62
chr9	7015793	rs74622166	T	C	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr9	7016001	rs818883	G	T	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	7076371	rs1570511	T	C	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,45:0.63:71
chr9	7076463	rs1570512	G	A	4586.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:125,212:0.63:337
chr9	7076586	rs1570513	G	A	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	7103580	.	G	GT	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.415;QD=3.92;ReadPosRankSum=1.135;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr9	7103816	rs3763651	C	T	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=2.090;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:167,84:0.33:251
chr9	7105548	rs10758825	G	C	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:89,178:0.67:267
chr9	7105651	rs1407863	C	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:23,44:0.66:67
chr9	7170006	rs7022348	G	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:11,26:0.70:37
chr9	7174673	rs913588	G	A	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=0.702;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:102,48:0.32:150
chr9	7174773	rs913589	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr9	7798435	rs1254	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	7798518	rs4742410	G	C	7325.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr9	7799606	rs14059	C	A	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:126,62:0.33:188
chr9	7799653	rs1127430	G	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:72,33:0.31:105
chr9	7799787	rs2297554	C	T	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-2.244;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:38,60:0.61:98
chr9	8331574	rs146237556	A	AAACTTACCATTCTTGAACTGT	1509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.715;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.080;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:124,39:0.24:163
chr9	8338778	rs35311961	T	TA	432.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	8338847	rs143960430	C	CAGAGAGAGAGAGAGAG	1615.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,39:0.71:55
chr9	8338878	rs3847286	A	C	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:87,32:0.27:119
chr9	8340168	rs4742483	C	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr9	8340226	rs10976972	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr9	8341280	.	G	GA	943.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=4.965;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.355;QD=7.26;ReadPosRankSum=-0.997;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:61,69:0.53:130
chr9	8376477	rs1566447	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr9	8451755	rs10977117	T	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=0.407;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:135,56:0.29:191
chr9	8451816	rs4742505	TT	AC	2280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.829;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:176,68:0.28:244
chr9	8454413	rs10977121	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	8492703	rs5896249	AT	A	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-1.585;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr9	8524797	rs191633839	T	C	3749.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:73,171:0.70:244
chr9	8525217	rs35751005	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.062;QD=0.28;ReadPosRankSum=-0.947;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr9	12704725	rs2733832	C	T	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr9	12708910	rs2733834	C	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr9	12708958	rs147565972	T	TA	3057.73	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:36,99:0.73:135
chr9	12775861	rs139315731	T	TGGTGGC,TGGCGGCGGC	7244.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=333;set=Intersection	GT:AF:DP	1/2:0.32,0.64:277
chr9	12775889	rs3750501	A	G	6055.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:106,280:0.73:386
chr9	13109111	rs10732331	C	T	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	13110844	rs28455695	T	C	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.40;ReadPosRankSum=0.434;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr9	13112116	rs10809904	A	G	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	13125201	rs2297003	T	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr9	13126470	rs10738323	C	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr9	13136564	rs10809908	A	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr9	13147723	rs7024892	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=2.167;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:65,38:0.37:103
chr9	13150531	rs10756457	T	C	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:145,91:0.39:236
chr9	13165218	rs10960959	C	T	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr9	13175715	rs3831219	TGAG	T	1480.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chr9	13175987	rs1331674	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:81,32:0.28:113
chr9	13176312	rs2274856	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:162,75:0.32:237
chr9	13192320	rs1331676	C	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	13206106	rs368811859	TA	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.708;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:116,40:0.26:156
chr9	14120655	rs6474818	A	G	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	14155769	rs12349255	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	14306944	rs4741362	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	14313712	rs2273933	T	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr9	14618856	rs3802482	C	T	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	14619168	rs10810187	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	14640055	rs6474849	C	T	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	14662171	rs10961640	T	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:198,94:0.32:292
chr9	14662410	rs7036630	G	A	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr9	14690362	rs76399860	G	C	418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=1.707;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:64,28:0.30:92
chr9	14690419	rs10961672	T	C	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	14690447	rs2382477	G	T	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	14693270	rs71476227	G	A	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr9	14737506	rs10961689	T	G	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	14737616	rs10961690	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	14737743	rs10511596	C	A	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	14740300	rs2270528	A	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	14747582	.	G	A	207.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr9	14756318	rs57793294	C	CA	6935.73	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:3,317:0.99:320
chr9	14756483	rs10810233	A	G	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr9	14759725	rs7045154	A	G	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	14770580	rs1874109	G	A	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-0.225;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr9	14774329	rs7018782	T	C	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	14775779	rs1874108	A	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.722;MLEAC=1;MLEAF=0.500;MQ=62.17;MQRankSum=-1.870;QD=1.73;ReadPosRankSum=-0.617;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr9	14775853	rs1032474	A	G	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	14784312	rs41265304	C	T	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr9	14784389	rs41265306	G	A	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:51,148:0.74:199
chr9	14801710	rs35870000	C	A	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.635;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-0.654;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:101,35:0.26:136
chr9	14801738	rs16932300	G	C	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:29,97:0.77:126
chr9	14806848	rs10810249	C	A	2703.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:69,119:0.63:188
chr9	14819370	rs7023244	G	T	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:80,140:0.64:220
chr9	14842267	rs41305315	T	C	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr9	14846122	rs2642404	C	G	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	14851617	rs2818940	T	C	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	14851703	rs729492	G	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	14859356	rs10961757	T	C	9096.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr9	14868653	rs7856810	A	T	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	15000551	rs7029527	T	C	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.00;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	15000684	rs1829852	A	C	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.084;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=16.25;ReadPosRankSum=0.484;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:12,31:0.72:43
chr9	15017223	rs2222456	G	A	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr9	15017240	rs1403562	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr9	15017388	rs112344710	G	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:59,27:0.31:86
chr9	15017410	rs1047677	G	T	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	15019447	rs77959631	A	G	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr9	15177890	.	C	T	223.77	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr9	15183532	rs2057478	C	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.20;ReadPosRankSum=-0.545;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr9	15188106	rs1407977	T	C	3289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.596;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=-0.018;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:50,161:0.76:211
chr9	15190494	rs475932	A	C	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,63:0.69:91
chr9	15190775	rs7848147	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr9	15192720	rs566820	A	G	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr9	15214122	rs7025396	G	C	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:130,235:0.64:365
chr9	15447361	rs3830477	A	AACT	1239.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	15451597	rs74447267	G	A	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.74;ReadPosRankSum=0.380;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr9	15457853	rs10756669	G	A	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	15458080	rs35960449	A	AT,ATT	2633.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=190;set=Intersection	GT:AF:DP	1/2:0.71,0.19:156
chr9	15468414	rs34331255	CCTT	C	6881.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	15468480	rs4741507	T	C	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	15469882	rs76473372	A	T	72.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr9	15473914	.	AAAAAAAAAAAC	A	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.524;MLEAC=1;MLEAF=0.500;MQ=61.28;MQRankSum=2.943;QD=9.45;ReadPosRankSum=0.967;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:21,14:0.40:35
chr9	15486958	rs2737828	A	T	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	15623473	.	G	GCACACACA	904.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;QD=50.26;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	15678995	rs7037893	C	A	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	15695418	rs1355172	G	A	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr9	15784496	rs2382540	C	G	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr9	15784631	rs1539172	A	G	7447.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr9	15864506	rs770196	C	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	15882977	.	A	AGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCT	184.90	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	15883263	rs809493	G	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	15922137	rs1328285	A	G	8512.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr9	15922325	rs2225181	A	T	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.70;SOR=1.946;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	16253322	rs10733309	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	16430162	rs77558509	G	C	674.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr9	16431230	rs9298764	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	16431243	rs41313973	C	G	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr9	16435714	rs3739715	T	C	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:60,155:0.72:215
chr9	16582890	rs149223772	G	GAC,GACACACAC	1247.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.159;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=1.982;SOR=0.450;set=HC	GT:AD:AF:DP	1/2:33,53,31:0.45,0.26:117
chr9	16664871	rs35822374	T	TG	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	16685539	rs7046068	T	C	13832.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr9	16699287	rs10738447	C	T	3972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=1.412;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:247,115:0.32:362
chr9	16699292	rs10738448	C	T	3977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=0.610;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:233,113:0.33:346
chr9	16727698	rs1360285	G	A	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	16738269	rs7858914	G	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	16738307	rs7858709	A	C	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=44.47;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	16738312	rs7858712	A	G	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=42.99;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	16738338	rs35475650	GA	G	4823.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:7,238:0.97:245
chr9	16738556	rs4007684	C	CTTTT	2025.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	17135434	rs12003380	G	C	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:101,61:0.38:162
chr9	17143511	rs36086880	A	AG	227.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;MQ=60.39;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	17235563	rs3814137	C	A	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	17235642	rs67017076	AT	A	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	17236365	rs3814138	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=1.092;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr9	17236376	rs3814139	A	G	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-1.167;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr9	17273731	rs3808795	A	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-0.410;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:12,32:0.73:44
chr9	17273878	rs12376938	A	G	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=-0.809;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:36,56:0.61:92
chr9	17273926	rs12379655	C	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr9	17309311	rs78359995	A	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr9	17309374	rs6475126	T	A	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr9	17332484	rs5896735	AT	A	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-0.490;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:33,53:0.62:86
chr9	17340864	rs3808782	C	T	2243.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:359,144:0.29:503
chr9	17342383	rs1442527	C	T	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	17388125	rs2274916	C	T	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:66,40:0.38:106
chr9	17394465	rs7035357	G	A	85.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.31;ReadPosRankSum=-0.210;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chr9	17394536	rs7035276	C	T	349.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.305;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.274;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.58;ReadPosRankSum=0.332;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr9	17394996	rs3739489	T	C	5042.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:123,226:0.65:349
chr9	17395108	rs3739488	C	T	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,92:0.69:134
chr9	17409366	rs2780211	G	A	4014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=-1.035;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:91,186:0.67:277
chr9	17409556	rs2584549	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr9	17457512	rs35399020	TA	T	492.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr9	17457513	rs10963108	A	T	155.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr9	17464402	rs1442532	G	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	17494792	.	G	A	59	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=23;MQ=60.0;NF=4;NR=1;PP=59;QD=18.7542425094;SC=GAAAAGTATAGCGTATACAAT;SbPval=0.53;Source=Platypus;TC=7;TCF=6;TCR=1;TR=5;WE=17494800;WS=17494785;set=Platypus	GT:AD:AF:DP	1/0:2,5:0.71:7
chr9	17494866	rs77867050	A	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-0.000;QD=7.09;ReadPosRankSum=0.992;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr9	17494874	rs35224903	CT	C	31.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=12.632;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=1.200;SOR=4.400;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr9	17579190	rs4961573	C	G	11572.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	17579198	rs4961574	T	G	12158.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	17579370	rs3739487	T	C	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:48,82:0.63:130
chr9	17747173	rs3780226	C	A	1477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-1.647;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:33,67:0.67:100
chr9	17747279	rs2031456	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	17761379	rs1886589	C	T	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:185,70:0.27:255
chr9	17775367	rs2209429	C	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	17781818	rs2224955	C	G	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:298,135:0.31:433
chr9	17781935	rs2209431	G	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,45:0.41:110
chr9	17787220	rs41305339	C	G	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr9	18657558	rs776776	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	18681696	.	G	GTGTTGGGA	466	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=11;HapScore=2;MGOF=24;MMLQ=23;MQ=59.21;NF=13;NR=0;PP=466;QD=36.3076923077;SC=GTCCTCGTGTGGGGGGGGGGG;SbPval=1.0;Source=Platypus;TC=17;TCF=17;TCR=0;TR=13;WE=18681704;WS=18681685;set=Platypus	GT:AD:AF:DP	0/1:4,13:0.76:17
chr9	18681697	.	G	GTTGGGA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-1.360;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr9	18681821	rs13293151	A	G	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:58,115:0.66:173
chr9	18717903	rs530120	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	18718114	rs4977339	A	C	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=-1.188;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:112,64:0.36:176
chr9	18718139	rs532101	C	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	18721748	rs539785	T	G	1671.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:32,75:0.70:107
chr9	18721847	rs145186476	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr9	18775810	rs934472	C	A	12126.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr9	18776840	rs1549986	A	C	12111.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:1,440:1.00:441
chr9	18777196	rs41268983	A	C	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=3.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-1.120;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:386,161:0.29:547
chr9	18777368	rs7033684	T	C	10075.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr9	18777422	rs45579937	G	A	2406.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:267,134:0.33:401
chr9	18817246	rs1433809	A	C	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	18817372	rs7873880	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr9	18826261	rs35525189	GT	G	869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=5.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.402;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:142,83:0.37:225
chr9	18826500	rs934469	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:73,36:0.33:109
chr9	18830087	rs7026429	G	A	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr9	18887753	rs731370	C	A	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:35,59:0.63:94
chr9	18887908	rs75551645	G	C	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.930;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.11;ReadPosRankSum=-0.747;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:64,109:0.63:173
chr9	18889544	rs10963819	A	T	2661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.108;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=-2.457;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:50,122:0.71:172
chr9	18889758	rs80314048	G	A	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr9	18890446	rs7026374	A	G	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:64,99:0.61:163
chr9	18890468	rs77410355	G	A	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:89,147:0.62:236
chr9	18907049	rs5896821	A	AT	4230.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:74,173:0.70:247
chr9	18907122	rs1327506	T	C	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr9	19032907	rs17810415	A	G	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:259,132:0.34:391
chr9	19033006	rs10963921	G	T	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,70:0.37:189
chr9	19033035	rs7035738	G	A	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:83,45:0.35:128
chr9	19033058	rs10963922	C	A	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr9	19058483	rs150852615	C	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:84,42:0.33:126
chr9	19058921	rs62622380	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr9	19063108	rs13302748	T	C	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,38:0.70:54
chr9	19076673	rs13286328	G	C	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.015;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.98;ReadPosRankSum=-1.448;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr9	19086979	rs2171957	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr9	19089375	rs41269007	A	C	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=1.910;QD=5.96;ReadPosRankSum=-0.096;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr9	19093287	rs41269011	A	G	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.689;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:110,45:0.29:155
chr9	19096832	rs4977495	A	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr9	19123745	rs10963972	A	G	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	19126476	rs3802335	C	T	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	19295941	rs10757051	A	G	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;MQ=59.82;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	19298259	rs16937435	C	T	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr9	19326053	rs2256093	G	T	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:116,69:0.37:185
chr9	19335160	rs11791904	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr9	19336169	rs10683145	G	GTA	713.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr9	19336747	rs117605726	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:66,23:0.26:89
chr9	19341045	rs928128	A	G	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-1.328;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:101,43:0.30:144
chr9	19346710	rs17818730	A	G	5112.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:112,222:0.66:334
chr9	19347204	rs2666801	T	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr9	19350980	rs2803125	C	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr9	19352260	rs10114039	A	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr9	19357230	rs36178701	C	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:63,30:0.32:93
chr9	19357276	rs10667709	C	CTTA	1225.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	19360566	rs75572195	GT	AC	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=2.469;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:54,28:0.34:82
chr9	19360570	rs35304654	C	T	999.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=1.742;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:49,28:0.36:77
chr9	19369764	rs151013945	C	CA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.575;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-0.649;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr9	19370108	rs10114375	G	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr9	19379367	rs957	G	A	2229.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:221,121:0.35:342
chr9	19424010	rs78074656	G	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=1.029;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:128,48:0.27:176
chr9	19435162	rs10964137	T	C	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-0.724;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:175,57:0.25:232
chr9	19516090	rs3739481	C	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:74,32:0.30:106
chr9	19550308	rs4977555	A	T	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	19573483	rs66707311	AACACACACACACACACACACACACAC	AAC,A	1326.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=69;set=Intersection	GT:AF:DP	1/1:1.00:32
chr9	19576815	rs2247818	C	T	1617.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	19576816	rs56172301	GGT	G	1608.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	19576949	rs2383101	T	G	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.09;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	19619509	rs1885220	C	T	2479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=2.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=0.154;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:56,112:0.67:168
chr9	19622072	rs4977307	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr9	19622268	rs4977308	T	C	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:64,141:0.69:205
chr9	20346377	rs66943046	C	CA	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.054;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.969;QD=7.13;ReadPosRankSum=0.220;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr9	20411367	rs16938059	G	A	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-1.254;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,18:0.44:41
chr9	20414310	.	ACTG	A	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=2.605;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.530;QD=1.15;ReadPosRankSum=-0.427;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:234,28:0.11:262
chr9	20502077	.	CT	C	37.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=6.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=1.528;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr9	20502078	rs6475449	T	C	234.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.524;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-1.411;SOR=2.658;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr9	20502080	.	A	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=6.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=1.476;SOR=0.065;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr9	20502096	rs6475450	G	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.27;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	20621901	rs376536186	CGT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=-0.141;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:232,28:0.11:260
chr9	20622064	rs71334542	C	CG	455.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr9	20720599	rs4977898	A	C	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:3,105:0.97:108
chr9	20740355	rs57561334	G	GT	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=2.203;QD=5.02;ReadPosRankSum=-1.287;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr9	20765097	rs7871811	A	G	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:119,57:0.32:176
chr9	20769987	rs7860490	G	T	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,15:0.27:56
chr9	20778631	rs7875153	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	20781979	rs6475473	C	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:37,16:0.30:53
chr9	20862506	rs4977779	G	A	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.129;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:106,45:0.30:151
chr9	20862515	rs4977780	A	C	5897.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	20866974	rs7875872	C	G	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	20882117	rs7026225	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	20885240	rs2383156	G	A	1375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.286;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=2.226;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:124,78:0.39:202
chr9	20916828	rs4977812	A	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,15:0.29:52
chr9	20923518	rs7044425	C	G	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	20923579	rs7044452	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	20923618	rs7044447	A	G	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=-2.016;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr9	20946952	rs7851042	T	C	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr9	20953049	rs3206852	A	G	3642.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:90,165:0.65:255
chr9	20976298	rs10119918	C	T	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr9	20978306	rs10811445	A	G	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=0.755;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:25,51:0.67:76
chr9	20978312	rs4977616	A	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.32;SOR=2.425;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	20982328	rs10964782	T	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:72,145:0.67:217
chr9	20982503	rs4304410	T	G	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	20988426	rs4977881	A	G	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	20993461	rs4497056	T	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:10,32:0.76:42
chr9	21007935	rs7041474	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	21026540	rs2275889	G	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:43,75:0.64:118
chr9	21026800	rs2275890	G	A	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr9	21029330	rs2298260	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=0.696;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr9	21031471	rs10964804	C	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.13;ReadPosRankSum=-1.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr9	21031479	rs10964805	C	T	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.69;ReadPosRankSum=-2.297;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr9	21077716	rs1051922	G	A	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:49,114:0.70:163
chr9	21409036	rs28751295	GA	G	785.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:15,48:0.76:63
chr9	21409901	rs10964982	G	A	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr9	21481556	rs1125488	T	G	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	21802984	.	A	AACACACACACACACACAC	177.25	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	21815589	rs59294842	T	TAAA	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.24;ReadPosRankSum=1.197;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr9	21968199	rs11515	C	G	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	22029445	rs10965215	G	A	11939.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr9	22452041	rs56665855	GTT	G	981.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:13,39:0.75:52
chr9	23764964	rs3838725	T	TA	1064.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:170,78:0.31:248
chr9	24545513	rs6475797	G	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:141,60:0.30:201
chr9	25677933	rs35110225	T	C	1893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=1.360;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:280,117:0.29:397
chr9	25677953	rs34498078	T	C	9596.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr9	25678177	.	A	ACGC	3088.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.643;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=0.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.994;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:148,88:0.37:236
chr9	26116016	rs10116592	G	A	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:377,158:0.30:535
chr9	26116150	rs7019716	G	T	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:438,241:0.35:679
chr9	26982270	rs57511456	CT	C	1530.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,77:0.97:79
chr9	26982449	.	A	ATT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.368;QD=2.55;ReadPosRankSum=-1.677;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr9	27047246	rs10812520	T	C	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	27047460	rs16910953	T	C	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:34,64:0.65:98
chr9	27061142	rs34615635	GGT	G	1071.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=30.62;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	27062802	.	CA	C	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=5.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.140;SOR=0.258;set=HC	GT:AD:AF:DP	0/1:77,31:0.29:108
chr9	27168315	rs10511802	G	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	27168433	rs12349832	A	G	497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.75;ReadPosRankSum=-1.597;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:140,41:0.23:181
chr9	27168704	rs10967753	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr9	27172838	rs3739542	C	A	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	27173180	rs666478	C	T	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	27183463	rs682632	A	C	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	27191805	rs2208635	C	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.22;ReadPosRankSum=0.514;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr9	27192036	rs2224529	A	G	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	27192330	rs2252883	G	A	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	27197282	rs10812532	T	G	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:34,101:0.75:135
chr9	27197368	rs35357088	T	C	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=2.052;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.851;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:221,95:0.30:316
chr9	27202870	rs639225	A	G	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.814;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:274,107:0.28:381
chr9	27203134	rs638203	A	G	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.612;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:145,44:0.23:189
chr9	27217516	rs5897224	CTGTT	C	1832.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	27217522	rs5004610	G	A	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	27217783	rs111512563	A	AT	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=1.100;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:47,16:0.25:63
chr9	27217791	rs1923331	T	TC	1018.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr9	27217810	rs2275083	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr9	27217822	rs681754	G	A	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	27217851	rs681707	G	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	27218715	rs10121367	C	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:92,43:0.32:135
chr9	27218726	rs667250	C	T	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	27218960	rs12337434	A	T	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.830;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=1.793;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr9	27220066	rs2273719	G	A	344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.011;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:111,29:0.21:140
chr9	27228022	rs2273717	A	G	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	27229141	rs2273715	T	C	2291.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:302,138:0.31:440
chr9	27284708	rs1057524	T	A	5305.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:121,235:0.66:356
chr9	27289536	rs3739538	A	G	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.03;ReadPosRankSum=-0.361;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	27289545	rs3739537	G	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.146;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr9	27289812	rs1980661	T	C	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr9	27289832	rs1980660	G	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	27290984	rs2383724	T	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	27291133	rs57396932	G	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr9	27291140	rs59009836	C	CATTT	445.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr9	27291192	rs35677322	C	CT	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.86;ReadPosRankSum=-0.480;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr9	27291195	rs3739536	T	C	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=23.86;ReadPosRankSum=-0.751;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr9	27296595	rs7044345	C	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	27297260	rs7875090	A	T	197.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	27378301	rs1330920	A	G	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.123;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:101,46:0.31:147
chr9	27455095	rs12379154	G	C	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-1.388;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:57,87:0.60:144
chr9	27455135	rs34959338	G	A	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:76,141:0.65:217
chr9	27455584	rs62542376	C	G	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.43;ReadPosRankSum=-1.732;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,29:0.74:39
chr9	27455584	.	CG	GA	554	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=29;MQ=60.0;NF=4;NR=19;PP=554;QD=26.4116467331;SC=TTGCAGGAAGCGAAAAGGCAC;SbPval=0.38;Source=Platypus;TC=37;TCF=5;TCR=32;TR=23;WE=27455593;WS=27455573;set=Platypus	GT:AD:AF:DP	0/1:14,23:0.62:37
chr9	27455585	rs10757661	G	A	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.44;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	27524731	rs700785	A	G	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	27556780	rs10122902	G	A	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:98,145:0.60:243
chr9	27561465	rs3063748	A	ATGT	1479.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	27561628	rs17769294	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:34,62:0.65:96
chr9	27562293	rs10812616	T	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr9	27562352	rs2589050	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	28863459	rs13285849	A	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	28889060	rs7043805	C	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	32384825	rs882812	G	A	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=1.120;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:110,55:0.33:165
chr9	32384843	rs913762	A	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	32405639	rs41298178	T	G	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,42:0.41:102
chr9	32408496	rs10123372	C	G	3167.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:57,140:0.71:197
chr9	32418237	rs2026739	G	T	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:116,62:0.35:178
chr9	32427592	rs72561746	C	G	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.569;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.277;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr9	32427600	rs2375965	A	G	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	32436014	rs7022554	A	G	2784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.158;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:411,168:0.29:579
chr9	32440404	rs45454698	G	C	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,26:0.29:91
chr9	32457189	rs10970987	T	C	5101.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:97,240:0.71:337
chr9	32457491	.	A	AAAAAAG	790.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.45;QD=30.41;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr9	32466184	rs2274864	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.354;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:120,43:0.26:163
chr9	32485288	rs71302893	C	CA	1048.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.495;QD=3.81;ReadPosRankSum=1.208;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:185,90:0.33:275
chr9	32488237	rs10813825	G	C	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,38:0.36:106
chr9	32488681	rs10971002	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr9	32489558	rs148402695	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=1.191;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr9	32491240	rs6476363	C	T	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=-1.043;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:161,61:0.27:222
chr9	32498291	rs2777725	A	G	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	32525915	rs3824456	C	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr9	32525969	rs2777729	C	A	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr9	32526233	rs3739674	G	C	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr9	32542204	rs10971019	A	G	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:256,126:0.33:382
chr9	32552164	rs35002468	T	TCTC	415.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.112;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr9	32552172	rs35415231	CA	C	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.444;QD=8.55;ReadPosRankSum=-0.295;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,54:0.81:67
chr9	32552462	rs15014	C	G	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:51,49:0.49:100
chr9	32973709	.	CAA	C,CA	852.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.550;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.555;QD=12.92;ReadPosRankSum=-0.841;SOR=1.085;set=HC	GT:AD:AF:DP	1/2:7,20,39:0.30,0.59:66
chr9	32973777	rs34683066	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	32974372	rs4878522	C	T	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	32986032	rs200922655	AAAAAAAAACAAAAAAAAAAAC	A	217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=0.034;QD=5.18;ReadPosRankSum=-0.541;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:21,21:0.50:42
chr9	32986248	rs7869475	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	32987451	rs884546	G	A	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	33001449	rs1197774	C	A	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	33026572	rs20583	T	C	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.71;QD=26.00;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	33026638	rs2274769	G	A	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	33036550	rs2297215	A	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	33039024	rs7296	T	A	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	33047398	rs2274767	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	33053430	rs7041702	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	33056971	rs35445781	GA	G	909.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:14,62:0.82:76
chr9	33062291	rs13290323	A	G	6961.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	33116238	rs34433922	AT	A	1259.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.904;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.00;ReadPosRankSum=-0.330;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr9	33264392	.	AGGGTCAACTCCTCGCTCC	A	14193.73	.	AC=1;AF=0.500;AN=2;DP=822;set=Intersection	GT:AD:AF:DP	0/1:243,362:0.60:605
chr9	33264540	rs1071545	C	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	33270479	rs844239	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	33270748	rs831271	G	T	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr9	33290532	rs830576	A	G	11652.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr9	33290688	rs4879682	G	C	6563.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	33344252	rs642157	T	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:1,68:0.99:69
chr9	33354070	rs145934546	TTTTTA	T	6004.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	33366788	rs141128443	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr9	33369943	rs2230122	G	A	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=1.614;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:139,66:0.32:205
chr9	33385600	rs117066088	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.621;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-6.494;QD=4.47;ReadPosRankSum=0.187;SOR=0.239;set=HC	GT:AD:AF:DP	0/1:36,8:0.18:44
chr9	33385602	rs145413647	AC	CT	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.446;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-6.571;QD=4.37;ReadPosRankSum=0.335;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr9	33386144	.	G	A	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.576;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=9.150;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-12.374;QD=5.11;ReadPosRankSum=-2.544;SOR=1.493;set=HC	GT:AD:AF:DP	0/1:154,34:0.18:188
chr9	33386146	rs76608797	C	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.096;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=7.337;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-12.460;QD=5.01;ReadPosRankSum=-2.425;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:160,36:0.18:196
chr9	33386167	rs79172651	G	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=7.033;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-10.426;QD=3.52;ReadPosRankSum=-2.092;SOR=1.128;set=HC	GT:AD:AF:DP	0/1:208,64:0.24:272
chr9	33386211	rs80148578	G	A	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=7.167;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-8.192;QD=6.39;ReadPosRankSum=0.856;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:236,131:0.36:367
chr9	33386226	rs78244036	T	C	2636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=4.865;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-7.923;QD=7.47;ReadPosRankSum=2.434;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:216,137:0.39:353
chr9	33386243	rs76705820	C	T	2293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=6.654;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-5.808;QD=6.91;ReadPosRankSum=3.588;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:202,130:0.39:332
chr9	33386284	rs73478964	T	G	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:128,103:0.45:231
chr9	33386378	rs74462413	C	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.521;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=26.025;MLEAC=1;MLEAF=0.500;MQ=57.20;MQRankSum=-3.116;QD=3.92;ReadPosRankSum=0.285;SOR=2.934;set=HC	GT:AD:AF:DP	0/1:91,19:0.17:110
chr9	33386387	rs77429065	G	A	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.836;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=26.589;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-3.724;QD=3.14;ReadPosRankSum=0.087;SOR=3.245;set=HC	GT:AD:AF:DP	0/1:103,16:0.13:119
chr9	33386393	rs77837642	G	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.389;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=30.453;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-4.643;QD=1.81;ReadPosRankSum=0.341;SOR=3.758;set=HC	GT:AD:AF:DP	0/1:107,13:0.11:120
chr9	33386395	rs2484931	T	C	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	33386399	.	CA	TG	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=24.801;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-5.332;QD=1.49;ReadPosRankSum=0.647;SOR=3.430;set=HC	GT:AD:AF:DP	0/1:114,11:0.09:125
chr9	33386510	rs77962308	CA	TG	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.723;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-11.682;QD=3.93;ReadPosRankSum=0.407;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:164,31:0.16:195
chr9	33386526	rs79202054	G	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-10.168;QD=1.82;ReadPosRankSum=2.397;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:130,30:0.19:160
chr9	33395031	rs72707429	G	A	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.778;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=10.836;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-9.063;QD=10.23;ReadPosRankSum=3.571;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:128,55:0.30:183
chr9	33395039	rs72707431	C	T	1817.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.933;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=13.459;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-9.839;QD=8.70;ReadPosRankSum=4.292;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:154,55:0.26:209
chr9	33395196	rs642636	A	G	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	33442272	rs2231235	G	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-0.206;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:208,80:0.28:288
chr9	33447306	rs517210	C	G	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:117,59:0.34:176
chr9	33447424	rs591810	C	G	1331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=-1.167;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:398,113:0.22:511
chr9	33447547	rs12555686	G	T	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.578;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:165,71:0.30:236
chr9	33465928	rs3739680	T	C	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:88,136:0.61:224
chr9	33467983	rs679644	G	A	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	33473893	rs2777744	T	G	2654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321;ClippingRankSum=0.000;DB;DP=567;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=1.255;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:397,169:0.30:566
chr9	33524684	rs3843933	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr9	33524725	rs3843934	G	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr9	33524775	rs7866888	C	A	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr9	33547799	rs58727961	T	C	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr9	33555701	rs199537216	TC	T	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=1.127;QD=1.37;ReadPosRankSum=-0.440;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr9	33573160	rs1807130	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr9	33573377	rs597219	T	C	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,36:0.80:45
chr9	33617691	rs147881110	TGGATGTAACACG	T	2487.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	33618028	rs855511	A	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr9	33618358	rs855512	A	G	13367.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr9	33618460	rs966447	A	T	6943.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr9	33618497	rs2380835	G	A	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	33625185	rs36079164	C	T	16564.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr9	33750748	rs10971678	G	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	33794667	rs369375802	C	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-10.866;QD=0.73;ReadPosRankSum=-1.010;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:104,16:0.13:120
chr9	33794707	.	TG	CA	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=7.016;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-14.366;QD=0.37;ReadPosRankSum=2.850;SOR=1.595;set=HC	GT:AD:AF:DP	0/1:191,17:0.08:208
chr9	33794717	.	A	G	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=6.039;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-14.369;QD=0.78;ReadPosRankSum=2.208;SOR=1.391;set=HC	GT:AD:AF:DP	0/1:211,21:0.09:232
chr9	33794726	.	GC	CA	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.382;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=9.080;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-16.224;QD=1.10;ReadPosRankSum=1.894;SOR=1.616;set=HC	GT:AD:AF:DP	0/1:242,23:0.09:265
chr9	33794736	.	A	G	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.081;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=8.490;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-17.426;QD=1.51;ReadPosRankSum=-0.194;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:273,33:0.11:306
chr9	33794749	.	C	A	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.538;ClippingRankSum=0.000;DP=351;ExcessHet=3.0103;FS=6.798;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-17.959;QD=2.73;ReadPosRankSum=-2.429;SOR=1.166;set=HC	GT:AD:AF:DP	0/1:304,47:0.13:351
chr9	33794753	.	A	G	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.904;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=7.775;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-17.637;QD=2.92;ReadPosRankSum=-2.437;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:312,49:0.14:361
chr9	33794759	.	G	A	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.223;ClippingRankSum=0.000;DP=393;ExcessHet=3.0103;FS=13.758;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-15.506;QD=0.27;ReadPosRankSum=-3.044;SOR=1.541;set=HC	GT:AD:AF:DP	0/1:343,47:0.12:390
chr9	33794797	.	TGA	T	1820.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=493;ExcessHet=3.0103;FS=3.492;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-14.992;QD=3.86;ReadPosRankSum=-0.937;SOR=1.028;set=HC	GT:AD:AF:DP	0/1:394,78:0.17:472
chr9	33794809	rs201061108	G	A	3617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=487;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-20.032;QD=7.44;ReadPosRankSum=1.105;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:377,109:0.22:486
chr9	33794812	rs199873220	G	T	3446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-19.492;QD=7.14;ReadPosRankSum=1.369;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:371,112:0.23:483
chr9	33794877	.	C	T	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-11.017;QD=0.36;ReadPosRankSum=1.134;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:457,49:0.10:506
chr9	33794890	.	T	A	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DP=473;ExcessHet=3.0103;FS=0.893;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-11.081;QD=1.46;ReadPosRankSum=1.038;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:424,48:0.10:472
chr9	33794894	.	T	C	3164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.639;ClippingRankSum=0.000;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-17.121;QD=6.84;ReadPosRankSum=-1.464;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:324,139:0.30:463
chr9	33794906	.	TTGAAACA	T	1242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=40.521;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-10.971;QD=3.24;ReadPosRankSum=-1.114;SOR=2.656;set=HC	GT:AD:AF:DP	0/1:328,55:0.14:383
chr9	33794915	.	TTCC	T	1315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.427;ClippingRankSum=0.000;DP=350;ExcessHet=3.0103;FS=39.733;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-10.834;QD=3.77;ReadPosRankSum=-1.267;SOR=2.735;set=HC	GT:AD:AF:DP	0/1:295,54:0.15:349
chr9	33794923	.	CTT	C	2642.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.868;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=14.090;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-14.758;QD=8.81;ReadPosRankSum=-1.342;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:222,78:0.26:300
chr9	33794926	.	T	C	1207.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.596;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=38.772;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-10.072;QD=4.01;ReadPosRankSum=-2.327;SOR=2.908;set=HC	GT:AD:AF:DP	0/1:253,48:0.16:301
chr9	33794927	.	T	C	407.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=4.934;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-9.365;QD=1.39;ReadPosRankSum=1.151;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:263,30:0.10:293
chr9	33794929	.	A	T	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.169;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=38.393;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-9.292;QD=4.39;ReadPosRankSum=-2.745;SOR=3.034;set=HC	GT:AD:AF:DP	0/1:239,45:0.16:284
chr9	33794933	.	T	G	1054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.480;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=36.122;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-8.608;QD=3.82;ReadPosRankSum=-2.147;SOR=3.158;set=HC	GT:AD:AF:DP	0/1:236,40:0.14:276
chr9	33794942	.	A	G	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.378;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=29.224;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-7.178;QD=3.37;ReadPosRankSum=-3.540;SOR=3.098;set=HC	GT:AD:AF:DP	0/1:198,34:0.15:232
chr9	33794955	.	G	T	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.190;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=30.178;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-6.042;QD=2.46;ReadPosRankSum=-4.114;SOR=3.808;set=HC	GT:AD:AF:DP	0/1:171,25:0.13:196
chr9	33794956	.	G	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.561;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=27.936;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-6.148;QD=2.51;ReadPosRankSum=-4.152;SOR=3.730;set=HC	GT:AD:AF:DP	0/1:168,24:0.12:192
chr9	33794965	.	A	C	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.975;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=27.092;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-4.718;QD=1.97;ReadPosRankSum=-4.770;SOR=4.493;set=HC	GT:AD:AF:DP	0/1:145,19:0.12:164
chr9	33794975	.	A	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=8.830;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-9.701;QD=2.10;ReadPosRankSum=-0.179;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:115,16:0.12:131
chr9	33794981	.	A	G	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=6.579;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-9.773;QD=2.49;ReadPosRankSum=-0.629;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:102,15:0.13:117
chr9	33795415	.	G	A	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.864;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=9.819;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-10.127;QD=3.82;ReadPosRankSum=4.201;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:106,20:0.16:126
chr9	33795417	rs373360400	AGCCGAG	A	423.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=9.162;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-10.863;QD=2.94;ReadPosRankSum=4.329;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:124,20:0.14:144
chr9	33795437	rs372175402	C	A	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.330;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=4.906;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-12.198;QD=1.65;ReadPosRankSum=4.170;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:160,20:0.11:180
chr9	33795439	.	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=3.293;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-12.509;QD=1.49;ReadPosRankSum=4.121;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:169,20:0.11:189
chr9	33795441	.	C	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=3.280;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-12.679;QD=1.48;ReadPosRankSum=3.995;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:174,20:0.10:194
chr9	33795579	.	C	T	56.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.828;ClippingRankSum=0.000;DP=806;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-26.083;QD=0.07;ReadPosRankSum=-6.841;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:751,52:0.06:803
chr9	33795581	.	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.000;ClippingRankSum=0.000;DP=817;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-26.449;QD=0.28;ReadPosRankSum=-6.932;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:757,57:0.07:814
chr9	33795583	.	C	T	631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.949;ClippingRankSum=0.000;DP=827;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-26.763;QD=0.77;ReadPosRankSum=-6.951;SOR=1.229;set=HC	GT:AD:AF:DP	0/1:762,62:0.08:824
chr9	33795593	rs201140357	G	A	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=897;ExcessHet=3.0103;FS=0.896;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-28.782;QD=1.72;ReadPosRankSum=-6.935;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:801,93:0.10:894
chr9	33795601	.	G	T	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DP=943;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-29.654;QD=2.45;ReadPosRankSum=-5.864;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:830,110:0.12:940
chr9	33795603	.	G	C	2739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=952;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-29.819;QD=2.89;ReadPosRankSum=-5.934;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:832,116:0.12:948
chr9	33795613	.	C	T	3557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332;ClippingRankSum=0.000;DP=1022;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-31.030;QD=3.49;ReadPosRankSum=-4.296;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:875,143:0.14:1018
chr9	33795622	.	T	C	3950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.866;ClippingRankSum=0.000;DP=1064;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-31.555;QD=3.73;ReadPosRankSum=-1.076;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:906,154:0.15:1060
chr9	33795624	.	A	C	4202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DP=1081;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-31.600;QD=3.90;ReadPosRankSum=-1.019;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:915,162:0.15:1077
chr9	33795638	.	C	T	4702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;ClippingRankSum=0.000;DP=1154;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-32.311;QD=4.09;ReadPosRankSum=3.323;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:968,182:0.16:1150
chr9	33795640	.	ACCC	A	4660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;ClippingRankSum=0.000;DP=1169;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-32.423;QD=4.00;ReadPosRankSum=4.025;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:982,183:0.16:1165
chr9	33795646	.	C	CAA	4896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DP=1156;ExcessHet=3.0103;FS=1.573;MLEAC=1;MLEAF=0.500;MQ=58.10;MQRankSum=-32.235;QD=4.25;ReadPosRankSum=5.014;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:969,183:0.16:1152
chr9	33795652	.	T	C	5040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DP=1158;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-31.723;QD=4.36;ReadPosRankSum=5.252;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:958,197:0.17:1155
chr9	33795703	rs370216620	C	T	5647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=815;ExcessHet=3.0103;FS=3.076;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-26.938;QD=6.95;ReadPosRankSum=-1.445;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:631,182:0.22:813
chr9	33795707	rs373461727	C	G	5661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.956;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=3.071;MLEAC=1;MLEAF=0.500;MQ=57.16;MQRankSum=-26.179;QD=7.34;ReadPosRankSum=-2.763;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:592,179:0.23:771
chr9	33795731	.	A	G	3512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-22.588;QD=6.60;ReadPosRankSum=-1.873;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:422,110:0.21:532
chr9	33795735	.	A	T	3254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;ClippingRankSum=0.000;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-22.007;QD=6.51;ReadPosRankSum=-2.265;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:395,105:0.21:500
chr9	33795739	.	C	T	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-21.108;QD=6.29;ReadPosRankSum=-1.727;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:372,94:0.20:466
chr9	33795762	.	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-16.217;QD=4.70;ReadPosRankSum=0.834;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:247,48:0.16:295
chr9	33795775	.	C	T	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.667;ClippingRankSum=0.000;DP=227;ExcessHet=3.0103;FS=0.828;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-13.816;QD=4.68;ReadPosRankSum=0.170;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:187,40:0.18:227
chr9	33796660	.	T	C	1681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DP=398;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-8.631;QD=4.24;ReadPosRankSum=-3.689;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:288,109:0.27:397
chr9	33796672	rs77765166	TG	CA	4506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-9.234;QD=10.04;ReadPosRankSum=0.468;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:319,130:0.29:449
chr9	33796777	rs368576294	A	G	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=824;ExcessHet=3.0103;FS=7.235;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-15.511;QD=0.53;ReadPosRankSum=5.931;SOR=1.655;set=HC	GT:AD:AF:DP	0/1:756,66:0.08:822
chr9	33796799	rs200709040	A	T	5334.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:442,160:0.27:602
chr9	33796802	.	TAAGTG	T	2323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.928;ClippingRankSum=0.000;DP=585;ExcessHet=3.0103;FS=10.911;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-15.949;QD=3.99;ReadPosRankSum=-3.230;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:490,93:0.16:583
chr9	33796811	rs200466488	G	A	2455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.341;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=9.354;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=-15.570;QD=4.47;ReadPosRankSum=-3.146;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:461,88:0.16:549
chr9	33796889	.	A	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-8.357;QD=0.64;ReadPosRankSum=3.586;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:126,12:0.09:138
chr9	33796896	.	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=3.349;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-8.985;QD=0.88;ReadPosRankSum=3.452;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:112,12:0.10:124
chr9	33796898	.	G	A	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.818;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=1.633;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-8.481;QD=1.25;ReadPosRankSum=3.031;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:99,12:0.11:111
chr9	33796904	.	G	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=1.651;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-7.813;QD=2.19;ReadPosRankSum=2.398;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:83,12:0.13:95
chr9	33797861	rs151192741	A	G	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=2.356;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-21.534;QD=4.03;ReadPosRankSum=-2.456;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:406,112:0.22:518
chr9	33797881	rs372122039	G	A	5866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=2.123;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-24.085;QD=7.45;ReadPosRankSum=-4.738;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:585,202:0.26:787
chr9	33797917	.	T	C	16300.77	.	AC=1;AF=0.500;AN=2;DP=1329;set=Intersection	GT:AD:AF:DP	0/1:897,429:0.32:1326
chr9	33797928	.	G	GCC	16493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.963;ClippingRankSum=0.000;DP=1500;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-30.684;QD=11.02;ReadPosRankSum=-1.065;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:967,530:0.35:1497
chr9	33797930	.	GAC	G	22389.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.818;ClippingRankSum=0.000;DP=1542;ExcessHet=3.0103;FS=2.604;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-30.886;QD=14.55;ReadPosRankSum=-3.378;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:992,547:0.36:1539
chr9	33797951	rs150316320	A	C	27391.77	.	AC=1;AF=0.500;AN=2;DB;DP=1783;set=Intersection	GT:AD:AF:DP	0/1:1066,714:0.40:1780
chr9	33797962	rs374178684	A	G	29805.77	.	AC=1;AF=0.500;AN=2;DB;DP=1879;set=Intersection	GT:AD:AF:DP	0/1:1096,779:0.42:1875
chr9	33797969	rs149664918	T	A	6845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=1943;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-14.915;QD=3.53;ReadPosRankSum=-1.452;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:1658,280:0.14:1938
chr9	33797978	rs145485932	G	A	7988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.433;ClippingRankSum=0.000;DB;DP=1976;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-13.529;QD=4.05;ReadPosRankSum=2.411;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:1665,306:0.16:1971
chr9	33797987	rs137945391	G	T	19487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.521;ClippingRankSum=0.000;DB;DP=1961;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-22.351;QD=9.96;ReadPosRankSum=1.107;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:1392,564:0.29:1956
chr9	33797991	rs146966861	GC	AT	9143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=1924;ExcessHet=3.0103;FS=0.698;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-12.089;QD=4.77;ReadPosRankSum=6.302;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:1583,335:0.17:1918
chr9	33797999	rs142141488	A	G	18651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646;ClippingRankSum=0.000;DB;DP=1843;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-20.375;QD=10.16;ReadPosRankSum=-1.632;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:1311,525:0.29:1836
chr9	33798016	.	C	T	15176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DP=1678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-18.985;QD=9.08;ReadPosRankSum=-1.492;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:1234,437:0.26:1671
chr9	33798017	rs855581	A	G	38006.77	.	AC=1;AF=0.500;AN=2;DB;DP=1650;set=Intersection	GT:AD:AF:DP	0/1:339,1304:0.79:1643
chr9	33798037	.	T	C	9149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DP=1344;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-12.994;QD=6.84;ReadPosRankSum=0.561;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:1047,290:0.22:1337
chr9	33798042	rs141382822	G	C	8394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.022;ClippingRankSum=0.000;DB;DP=1291;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-11.284;QD=6.54;ReadPosRankSum=0.630;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:1015,269:0.21:1284
chr9	33798052	rs377380263	C	T	9399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=1122;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-10.815;QD=8.43;ReadPosRankSum=1.917;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:771,344:0.31:1115
chr9	33798073	.	C	T	15397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252;ClippingRankSum=0.000;DP=777;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-12.630;QD=19.97;ReadPosRankSum=-2.093;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:377,394:0.51:771
chr9	33798075	.	T	C	15155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.862;ClippingRankSum=0.000;DP=743;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-12.386;QD=20.56;ReadPosRankSum=-1.994;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:363,374:0.51:737
chr9	33798079	rs144845866	T	C	3979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.528;ClippingRankSum=0.000;DB;DP=684;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-10.190;QD=5.87;ReadPosRankSum=1.578;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:452,226:0.33:678
chr9	33798112	.	C	T	3564.77	.	AC=1;AF=0.500;AN=2;DP=336;set=Intersection	GT:AD:AF:DP	0/1:187,144:0.44:331
chr9	33798574	rs201773718	G	A	3068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.721;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.666;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-21.905;QD=6.28;ReadPosRankSum=-3.421;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:390,99:0.20:489
chr9	33798596	rs377148991	T	C	4393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.525;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=2.763;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-22.102;QD=7.37;ReadPosRankSum=-1.084;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:423,173:0.29:596
chr9	33798633	rs370619518	T	C	6618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.586;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-24.578;QD=9.98;ReadPosRankSum=6.188;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:457,206:0.31:663
chr9	33799163	rs376841271	C	A	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=548;ExcessHet=3.0103;FS=3.399;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-21.639;QD=0.96;ReadPosRankSum=2.211;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:498,49:0.09:547
chr9	33799181	.	C	T	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DP=527;ExcessHet=3.0103;FS=3.483;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-17.555;QD=0.99;ReadPosRankSum=0.028;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:477,48:0.09:525
chr9	33799186	.	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DP=518;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-17.392;QD=1.06;ReadPosRankSum=-0.503;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:468,48:0.09:516
chr9	33799218	.	G	A	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DP=386;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-16.894;QD=1.23;ReadPosRankSum=-2.358;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:340,40:0.11:380
chr9	33799224	.	C	G	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=5.359;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-16.051;QD=1.18;ReadPosRankSum=-1.858;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:319,36:0.10:355
chr9	33799230	.	C	CTG	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DP=339;ExcessHet=3.0103;FS=5.900;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-15.159;QD=0.77;ReadPosRankSum=-0.688;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:304,31:0.09:335
chr9	33799245	.	G	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=4.417;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-13.243;QD=0.58;ReadPosRankSum=1.382;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:244,22:0.08:266
chr9	33799251	.	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DP=254;ExcessHet=3.0103;FS=4.523;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-12.734;QD=0.57;ReadPosRankSum=1.629;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:231,21:0.08:252
chr9	33799263	.	C	T	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.891;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-12.081;QD=0.96;ReadPosRankSum=1.161;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:201,22:0.10:223
chr9	33927899	rs307692	G	A	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	33935736	rs307652	A	G	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	33938793	rs61353103	CA	C	433.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-0.339;QD=9.43;ReadPosRankSum=-1.073;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,37:0.80:46
chr9	33948652	rs307654	T	C	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	33952629	rs16935299	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	33953129	.	A	T	226.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr9	33960778	.	C	CA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=0.678;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=3.630;QD=0.51;ReadPosRankSum=-0.152;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:221,53:0.19:274
chr9	33969352	rs307675	T	C	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	33971740	rs3739690	A	G	13235.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr9	34011803	rs7029112	C	G	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	34011835	rs7029122	C	T	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	34017015	rs11432780	G	GA	2156.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=10.098;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=1.479;QD=12.91;ReadPosRankSum=0.243;SOR=1.102;set=HC	GT:AD:AF:DP	1/1:29,138:0.83:167
chr9	34017106	rs1785506	C	T	11053.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr9	34088561	rs41316005	G	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-1.284;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr9	34096597	rs7857551	G	A	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	34178974	rs9650705	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr9	34211942	rs1556439	T	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:29,80:0.73:109
chr9	34220855	rs41313794	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:50,86:0.63:136
chr9	34242192	rs10972015	C	T	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:85,146:0.63:231
chr9	34269386	rs141274403	ACTT	A	9387.73	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:145,236:0.62:381
chr9	34272085	rs72731297	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr9	34286486	rs6476442	G	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr9	34306410	rs17350674	C	A	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=3.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=2.310;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:251,104:0.29:355
chr9	34310927	rs10972048	T	C	7291.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:201,346:0.63:547
chr9	34343033	rs143309441	G	GA	524.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.422;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=5.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=0.111;SOR=1.550;set=HC	GT:AD:AF:DP	0/1:35,44:0.56:79
chr9	34370701	rs58832809	TG	T	952.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr9	34372783	rs4879781	G	C	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr9	34372873	rs4879782	C	G	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:60,105:0.64:165
chr9	34373041	rs10972084	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr9	34382726	rs3808876	A	G	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr9	34397545	rs11790577	A	G	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:155,71:0.31:226
chr9	34402173	rs10738926	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	34402663	rs41274849	C	T	2628.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:60,114:0.66:174
chr9	34406801	rs72019483	C	CT	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-1.170;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr9	34407041	rs12376650	C	T	2336.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:51,97:0.66:148
chr9	34407204	rs10119711	T	C	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:108,166:0.61:274
chr9	34407331	rs10972095	G	A	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,54:0.59:91
chr9	34407423	rs10116555	C	T	3952.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:124,188:0.60:312
chr9	34407572	rs7847950	G	C	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:40,76:0.66:116
chr9	34487782	rs4878572	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr9	34500595	rs4878575	G	T	457.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr9	34500821	rs11793196	G	A	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.68;ReadPosRankSum=1.483;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:35,72:0.67:107
chr9	34552018	rs41274855	G	C	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.217;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr9	34556453	rs2070802	A	T	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:237,108:0.31:345
chr9	34569010	rs9695558	T	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	34615896	rs144108229	C	CA,CAA	796.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.884;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.123;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.771;QD=9.84;ReadPosRankSum=1.419;SOR=0.499;set=HC	GT:AD:AF:DP	1/2:23,33,25:0.41,0.31:81
chr9	34618641	rs3802427	C	T	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr9	34622389	rs3808869	A	C	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:74,148:0.67:222
chr9	34624044	.	C	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=1.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.195;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:250,52:0.17:302
chr9	34627940	rs13283357	C	T	3282.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:61,145:0.70:206
chr9	34635598	rs4879809	T	C	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	34647397	.	C	G	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.646;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:326,68:0.17:394
chr9	34655436	rs2812357	T	C	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	34655734	rs11575576	G	T	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	34657663	rs1104748	T	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	34723181	rs2297132	G	A	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	34723744	rs4878588	C	A	3960.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	34723935	rs2297134	C	T	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.20;QD=27.02;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	34724059	rs117821239	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.99;QD=30.46;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	34724241	rs3739881	C	A	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr9	34724786	rs72617336	G	A	12378.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.98;QD=42.25;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr9	34724796	rs150496452	T	A	11496.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=44.91;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	34725047	rs78716275	C	T	10036.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:98,437:0.82:535
chr9	34725069	rs114933270	T	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.781;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=52.95;MQRankSum=-5.627;QD=0.47;ReadPosRankSum=2.189;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:380,63:0.14:443
chr9	34725742	rs62547039	T	C	10248.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr9	34726204	rs521574	G	A	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.57;QD=28.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	34832919	rs12377823	C	T	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:80,159:0.67:239
chr9	34833080	rs138460400	TC	T	2455.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:151,82:0.35:233
chr9	34834494	rs77822083	C	T	5349.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:317,271:0.46:588
chr9	34834880	rs112468216	A	C	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:107,104:0.49:211
chr9	34834937	rs202203144	A	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=18.308;MLEAC=1;MLEAF=0.500;MQ=53.00;MQRankSum=-5.443;QD=1.89;ReadPosRankSum=-3.336;SOR=2.881;set=HC	GT:AD:AF:DP	0/1:90,17:0.16:107
chr9	34835273	rs521552	A	C	6549.77	.	AC=1;AF=0.500;AN=2;DB;DP=774;set=Intersection	GT:AD:AF:DP	0/1:443,330:0.43:773
chr9	34835861	rs924566	C	G	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:38,63:0.62:101
chr9	34836905	rs3802426	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr9	34977759	rs2297647	C	T	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:74,171:0.70:245
chr9	35042785	rs72722952	C	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	35043291	rs615474	G	T	9797.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr9	35060302	rs684562	T	C	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	35060746	rs562381	A	G	4569.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr9	35060955	rs2258240	T	C	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	35061693	rs11272867	G	GACAGTACACAA	7505.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	35062972	rs514492	C	T	4843.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	35066579	rs35504855	T	TA	890.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.424;QD=15.91;ReadPosRankSum=0.090;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:5,51:0.91:56
chr9	35068201	rs10972300	C	T	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	35075022	rs17885240	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:128,49:0.28:177
chr9	35077203	rs17885726	G	A	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	35077441	rs554098	T	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	35079361	rs504082	G	T	18205.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr9	35089048	rs556766	A	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	35090782	rs505297	A	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	35091880	rs10814196	C	T	10941.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr9	35100002	rs664357	T	C	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	35100569	rs586017	A	G	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	35101383	rs34240345	GCA	G	7287.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	35101870	rs693325	C	G	4769.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	35107316	.	CAA	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=9.276;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=1.228;QD=10.55;ReadPosRankSum=-1.374;SOR=2.236;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	35107765	rs13287211	C	A	2435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=0.898;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:357,153:0.30:510
chr9	35107858	rs7039828	C	T	10341.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr9	35231047	rs10972390	C	T	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr9	35231332	rs10972391	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=-0.516;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr9	35259202	rs68023360	GCTGT	G	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr9	35295984	rs661712	T	C	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:39,30:0.43:69
chr9	35381504	rs2281999	C	T	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:61,106:0.63:167
chr9	35382559	.	A	AT	304.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=3.529;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.373;QD=3.35;ReadPosRankSum=0.616;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:57,34:0.37:91
chr9	35398406	rs2274593	C	T	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:19,47:0.71:66
chr9	35546735	rs1535422	A	G	15982.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr9	35555823	rs946483	T	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	35556250	rs870978	G	C	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	35556527	rs150786704	A	ACCTCTAAGTGCTGGCTGGGC	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=47.69;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	35559213	rs2295842	C	T	5899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-2.058;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:133,279:0.68:412
chr9	35559905	rs12338773	T	C	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr9	35561912	.	CCCCACCCT	C	1274	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=24;MQ=58.09;NF=0;NR=7;PP=1274;QD=184.142857143;SC=CTTTGTGTTCCCCCACCCTCC;SbPval=1.0;Source=Platypus;TC=20;TCF=0;TCR=20;TR=7;WE=35561927;WS=35561902;set=Platypus	GT:AD:AF:DP	1/0:13,7:0.35:20
chr9	35562328	rs5897609	TACAA	T	1308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.175;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=1.486;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:83,38:0.31:121
chr9	35562549	rs755774	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:264,128:0.33:392
chr9	35606738	rs7028425	C	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	35606884	rs2275422	G	A	4662.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	35610523	rs71940749	CCCCTGCTCTGAGT	C	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=7.246;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=2.769;QD=5.24;ReadPosRankSum=-0.924;SOR=1.947;set=HC	GT:AD:AF:DP	0/1:48,13:0.21:61
chr9	35610912	rs4879913	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr9	35615896	rs869487	C	G	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr9	35616583	rs2095858	A	T	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.721;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:159,83:0.34:242
chr9	35618371	.	G	T	4031.77	.	AC=1;AF=0.500;AN=2;DP=280;set=Intersection	GT:AD:AF:DP	0/1:106,174:0.62:280
chr9	35618523	rs10814260	G	A	3985.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:75,172:0.70:247
chr9	35650458	rs2297880	G	A	13459.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr9	35660990	rs1339374	A	G	3577.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:81,160:0.66:241
chr9	35661243	rs35234337	C	T	991.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,45:0.62:72
chr9	35662251	rs2297879	T	C	4621.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:91,213:0.70:304
chr9	35664624	rs1361338	C	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	35677702	rs2857801	T	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	35677711	rs35212337	AC	A	257.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.089;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:45,15:0.25:60
chr9	35679061	rs2857802	C	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	35684822	rs3215700	C	CG	3815.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.780;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=0.000;QD=25.27;ReadPosRankSum=1.083;SOR=0.355;set=HC	GT:AD:AF:DP	1/1:6,145:0.96:151
chr9	35689373	rs2145925	T	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	35698942	rs41298202	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.336;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=2.071;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:173,57:0.25:230
chr9	35700150	rs2295794	C	T	11754.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr9	35704179	rs62545554	A	C	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=1.966;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:140,65:0.32:205
chr9	35706007	rs11541909	A	G	4442.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:122,203:0.62:325
chr9	35711806	rs2249250	G	T	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	35713181	rs877365	C	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	35736728	rs118043069	G	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr9	35739115	rs3833700	G	GC	3574.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr9	35739876	rs3750434	G	A	1334.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr9	35751221	rs1570248	C	T	5804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.807;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=0.106;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:103,255:0.71:358
chr9	35752252	rs1570249	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr9	35811228	rs41277075	T	C	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:150,77:0.34:227
chr9	35825413	rs4879930	C	T	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:60,95:0.61:155
chr9	35845929	rs7848557	A	C	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,53:0.82:65
chr9	35870001	rs7044405	T	C	11005.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr9	35870225	rs72727089	G	A	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:115,231:0.67:346
chr9	35910788	rs62635821	T	A	1616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.612;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=9.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.584;SOR=0.172;set=HC	GT:AD:AF:DP	0/1:23,69:0.75:92
chr9	35957355	rs2233568	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:27,77:0.74:104
chr9	35957669	rs2233564	T	C	6024.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:125,275:0.69:400
chr9	35958047	rs2233558	T	C	5592.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:125,250:0.67:375
chr9	36063688	rs10814326	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr9	36063743	rs942478	C	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	36105264	rs11788747	A	G	3676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=-1.871;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:96,178:0.65:274
chr9	36109839	rs35304496	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.87;ReadPosRankSum=-0.649;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr9	36109947	rs10972726	C	A	4177.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:97,197:0.67:294
chr9	36110063	rs10972727	T	A	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:60,106:0.64:166
chr9	36110137	rs10972728	C	A	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr9	36141817	.	AT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.235;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=2.091;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.567;QD=1.80;ReadPosRankSum=0.698;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr9	36162776	.	GT	G	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=1.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=1.383;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr9	36209082	rs62541769	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr9	36630415	rs10973007	C	G	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr9	36643131	rs9298970	A	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.689;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:53,20:0.27:73
chr9	36669228	rs3780133	C	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	36674842	rs2274473	C	T	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	36840623	rs3780135	G	A	5454.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	36864119	rs4289895	A	G	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.52;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	36882141	rs2277143	T	C	10235.77	.	AC=1;AF=0.500;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	0/1:181,459:0.72:640
chr9	36882264	rs150095524	TACACACAC	T	1920.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.256;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=7.241;MLEAC=1;MLEAF=0.500;MQ=60.64;MQRankSum=1.340;QD=24.94;ReadPosRankSum=-0.947;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:21,56:0.73:77
chr9	37302155	rs10814518	C	T	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.233;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr9	37304168	rs11422051	A	AT	3178.73	.	AC=1;AF=0.500;AN=2;DB;DP=263;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:86,173:0.67:259
chr9	37305829	rs3837244	GATAT	G	1429.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:9,40:0.82:49
chr9	37305852	rs3780333	A	G	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr9	37422675	rs10973332	C	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=0.593;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:48,17:0.26:65
chr9	37426524	rs2736664	C	T	10924.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr9	37428578	rs41303225	C	T	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:188,99:0.34:287
chr9	37429661	rs309459	A	G	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	37429814	rs309458	A	G	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr9	37432264	rs309455	T	C	2859.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	37441808	rs309450	A	G	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr9	37486603	rs1571234	A	G	12894.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:337,587:0.64:924
chr9	37486916	rs913278	G	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr9	37503124	rs7047823	G	A	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	37521777	rs35979885	G	A	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:163,103:0.39:266
chr9	37536998	rs927930	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	37537557	rs7044153	G	A	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr9	37769811	rs10973531	T	G	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	37782111	rs7158	C	T	2834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=0.531;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:76,129:0.63:205
chr9	37800406	rs34106593	GA	G	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.503;QD=2.47;ReadPosRankSum=-1.491;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:52,35:0.40:87
chr9	37887570	.	T	TA	1549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=1.015;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=1.476;QD=11.74;ReadPosRankSum=-2.121;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:28,104:0.79:132
chr9	38015327	rs2183130	C	G	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	38015646	rs7047952	C	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	38016247	rs7037371	T	C	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	38068532	rs3750444	A	G	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	38395940	rs2228094	T	C	10599.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr9	38396065	rs2073478	G	T	11958.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr9	38396502	rs4878199	G	A	8039.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	38397355	rs3043	G	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	38413159	rs7018644	T	G	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-2.001;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:64,34:0.35:98
chr9	38414030	rs5897733	T	TCACA	2416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.556;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=7.443;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=8.89;ReadPosRankSum=0.084;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:191,81:0.30:272
chr9	38423826	rs7039990	T	A	949.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:124,51:0.29:175
chr9	38424344	rs35134904	A	G	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:113,51:0.31:164
chr9	38615698	rs1832313	C	T	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-2.405;QD=4.00;ReadPosRankSum=0.356;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:113,39:0.26:152
chr9	38615779	rs1765381	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:100,39:0.28:139
chr9	38621344	rs1815549	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=1.089;QD=5.99;ReadPosRankSum=1.624;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr9	40503085	rs139489532	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.78;QD=25.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	40503105	rs201003096	G	C	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.41;QD=28.53;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	40784183	rs4339693	A	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	43816656	rs199925161	T	C	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.96;QD=31.04;SOR=2.632;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	43818062	rs78142446	T	A	5149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=0.377;MLEAC=1;MLEAF=0.500;MQ=52.04;MQRankSum=-16.774;QD=13.00;ReadPosRankSum=1.083;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:145,251:0.63:396
chr9	43853583	rs375643696	CT	C	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.72;MQRankSum=-3.360;QD=4.74;ReadPosRankSum=0.363;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:53,14:0.21:67
chr9	43860959	rs145957320	G	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr9	43861081	rs62536501	T	G	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr9	44175168	rs374116912	C	A	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	0/1:466,204:0.30:670
chr9	65602551	rs11265643	C	T	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:62,69:0.53:131
chr9	65602595	rs372093550	G	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.741;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-0.697;QD=1.70;ReadPosRankSum=-0.162;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:141,31:0.18:172
chr9	66457014	.	C	T	1281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-7.031;QD=9.57;ReadPosRankSum=-2.849;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:93,41:0.31:134
chr9	66457016	rs10436128	C	T	591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.499;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=53.82;MQRankSum=-0.299;QD=4.26;ReadPosRankSum=1.033;SOR=1.095;set=HC	GT:AD:AF:DP	0/1:115,24:0.17:139
chr9	66457019	rs7040398	G	A	3885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.652;MLEAC=1;MLEAF=0.500;MQ=54.07;MQRankSum=-6.759;QD=25.23;ReadPosRankSum=-0.407;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:53,101:0.66:154
chr9	66457027	rs76122331	T	A	3770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-9.225;QD=23.28;ReadPosRankSum=1.210;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:68,94:0.58:162
chr9	66457030	.	T	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=54.52;MQRankSum=-2.324;QD=1.19;ReadPosRankSum=1.321;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:163,18:0.10:181
chr9	66457040	.	C	A	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=4.916;MLEAC=1;MLEAF=0.500;MQ=55.03;MQRankSum=-1.917;QD=4.05;ReadPosRankSum=0.170;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:155,31:0.17:186
chr9	66457051	rs79307166	G	C	4971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.482;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-10.860;QD=21.71;ReadPosRankSum=1.653;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:102,127:0.55:229
chr9	66457052	.	G	A	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=2.068;MLEAC=1;MLEAF=0.500;MQ=55.39;MQRankSum=-7.981;QD=6.29;ReadPosRankSum=-1.148;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:154,53:0.26:207
chr9	66457060	.	C	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.60;MQRankSum=-7.345;QD=0.75;ReadPosRankSum=3.119;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:252,24:0.09:276
chr9	66457062	.	G	C	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=0.784;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-7.537;QD=0.69;ReadPosRankSum=2.605;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:254,25:0.09:279
chr9	66457076	rs76994164	T	C	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:209,110:0.34:319
chr9	66457077	.	T	C	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=2.214;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-10.166;QD=2.53;ReadPosRankSum=4.331;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:248,39:0.14:287
chr9	66457106	rs200733760	C	T	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-12.035;QD=1.61;ReadPosRankSum=-0.302;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:281,47:0.14:328
chr9	66457112	rs113087405	G	A	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-1.444;QD=5.53;ReadPosRankSum=2.913;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:271,63:0.19:334
chr9	66457126	.	TGC	T	1846.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=1.071;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-0.979;QD=5.46;ReadPosRankSum=4.081;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:274,64:0.19:338
chr9	66457127	rs73447819	G	A	1694.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:264,65:0.20:329
chr9	66457129	.	A	ATG	1855.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.735;ClippingRankSum=0.000;DP=336;ExcessHet=3.0103;FS=0.505;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-0.978;QD=5.56;ReadPosRankSum=4.051;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:269,65:0.19:334
chr9	66457131	.	AAGG	A	541.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;ClippingRankSum=0.000;DP=344;ExcessHet=3.0103;FS=2.217;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=3.887;QD=1.58;ReadPosRankSum=1.655;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:306,36:0.11:342
chr9	66457151	rs78939328	G	C	3286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=6.696;MLEAC=1;MLEAF=0.500;MQ=56.83;MQRankSum=-4.488;QD=11.18;ReadPosRankSum=2.564;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:199,95:0.32:294
chr9	66457169	rs138400587	AGAG	A	3072.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.277;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=7.280;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-2.881;QD=11.96;ReadPosRankSum=1.903;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:171,86:0.33:257
chr9	66457173	.	GGA	G	635.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=247;set=Intersection	GT:AD:AF:DP	0/1:208,33:0.14:241
chr9	66457178	.	G	C	662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=3.388;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-5.863;QD=2.84;ReadPosRankSum=1.775;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:200,33:0.14:233
chr9	66457184	.	G	T	476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DP=215;ExcessHet=3.0103;FS=5.267;MLEAC=1;MLEAF=0.500;MQ=55.76;MQRankSum=-2.777;QD=2.25;ReadPosRankSum=2.997;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:186,26:0.12:212
chr9	66457189	rs2874584	C	T	1729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=0.914;QD=8.52;ReadPosRankSum=-2.735;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:151,52:0.26:203
chr9	66457192	rs148663514	TAGAGAGAG	TAGAGAG,T	1713.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=200;set=Intersection	GT:AF:DP	0/1:0.33:172
chr9	66457193	.	A	T	551.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=55.39;MQRankSum=-2.276;QD=2.92;ReadPosRankSum=2.553;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:165,24:0.13:189
chr9	66457200	.	G	C	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-1.526;QD=3.19;ReadPosRankSum=1.965;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:151,23:0.13:174
chr9	66457204	.	G	C	1001.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.128;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-6.814;QD=6.00;ReadPosRankSum=2.748;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:130,37:0.22:167
chr9	66457205	.	A	AAGGGGGGAG	563.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=-1.681;QD=3.40;ReadPosRankSum=1.588;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:143,23:0.14:166
chr9	66457206	.	G	C	623.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=6.679;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=1.272;QD=3.80;ReadPosRankSum=0.513;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:136,28:0.17:164
chr9	66457209	.	AG	A	1059.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.395;ClippingRankSum=0.000;DP=190;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=53.51;MQRankSum=-5.797;QD=5.67;ReadPosRankSum=3.137;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:147,40:0.21:187
chr9	66457211	.	ACAGAAAAG	A	1096.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=11.547;MLEAC=1;MLEAF=0.500;MQ=53.48;MQRankSum=-5.041;QD=6.99;ReadPosRankSum=5.044;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:124,33:0.21:157
chr9	66457216	rs150998016	A	G	737.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=-0.514;QD=5.27;ReadPosRankSum=-2.841;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:115,25:0.18:140
chr9	66457228	.	A	C	1002.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.943;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=8.379;MLEAC=1;MLEAF=0.500;MQ=53.34;MQRankSum=-5.391;QD=7.90;ReadPosRankSum=4.391;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr9	66457231	rs140644333	G	GAC	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.004;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=11.382;MLEAC=1;MLEAF=0.500;MQ=52.87;MQRankSum=2.164;QD=1.58;ReadPosRankSum=-0.738;SOR=2.340;set=HC	GT:AD:AF:DP	0/1:111,13:0.10:124
chr9	66457233	.	G	C	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=10.277;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=-4.706;QD=8.37;ReadPosRankSum=4.161;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:91,32:0.26:123
chr9	66457237	.	G	A	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.126;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=9.153;MLEAC=1;MLEAF=0.500;MQ=51.91;MQRankSum=0.396;QD=0.91;ReadPosRankSum=0.388;SOR=2.120;set=HC	GT:AD:AF:DP	0/1:111,12:0.10:123
chr9	66457253	.	A	C	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=21.064;MLEAC=1;MLEAF=0.500;MQ=50.70;MQRankSum=-2.635;QD=11.48;ReadPosRankSum=2.672;SOR=0.196;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr9	66457265	.	C	A	1064.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=13.345;MLEAC=1;MLEAF=0.500;MQ=50.21;MQRankSum=-4.247;QD=8.59;ReadPosRankSum=0.385;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:91,33:0.27:124
chr9	66457267	rs2002299	C	A	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=9.681;MLEAC=1;MLEAF=0.500;MQ=50.38;MQRankSum=2.572;QD=3.55;ReadPosRankSum=-0.223;SOR=1.749;set=HC	GT:AD:AF:DP	0/1:97,29:0.23:126
chr9	66457270	.	G	A	1071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=16.009;MLEAC=1;MLEAF=0.500;MQ=50.36;MQRankSum=-4.330;QD=8.44;ReadPosRankSum=-0.091;SOR=0.131;set=HC	GT:AD:AF:DP	0/1:94,33:0.26:127
chr9	66457278	.	G	T	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=12.141;MLEAC=1;MLEAF=0.500;MQ=50.37;MQRankSum=-4.470;QD=6.61;ReadPosRankSum=-0.905;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:96,31:0.24:127
chr9	66457310	rs75999199	T	G	659.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=4.770;MLEAC=1;MLEAF=0.500;MQ=50.20;MQRankSum=-2.460;QD=4.15;ReadPosRankSum=-1.384;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:133,26:0.16:159
chr9	66457313	rs79959518	G	A	1625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=10.707;MLEAC=1;MLEAF=0.500;MQ=50.12;MQRankSum=-4.778;QD=10.22;ReadPosRankSum=-5.141;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:106,53:0.33:159
chr9	66457317	rs77524857	C	T	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.159;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=7.977;MLEAC=1;MLEAF=0.500;MQ=50.06;MQRankSum=-2.614;QD=4.24;ReadPosRankSum=-1.869;SOR=0.219;set=HC	GT:AD:AF:DP	0/1:139,28:0.17:167
chr9	66457324	rs80001863	G	A	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=5.805;MLEAC=1;MLEAF=0.500;MQ=49.85;MQRankSum=-3.052;QD=4.42;ReadPosRankSum=-2.939;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:146,31:0.18:177
chr9	66457388	rs1809739	T	G	5123.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:148,187:0.56:335
chr9	66457399	rs78461570	T	G	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:246,143:0.37:389
chr9	66457440	rs79030992	A	G	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.897;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=2.053;MLEAC=1;MLEAF=0.500;MQ=55.29;MQRankSum=-10.902;QD=1.33;ReadPosRankSum=-0.495;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:530,54:0.09:584
chr9	66457451	rs79122745	T	C	5961.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:399,219:0.35:618
chr9	66457465	rs11262297	T	G	15268.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:268,379:0.59:647
chr9	66457467	.	G	GTGTGT	4967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DP=654;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=56.78;MQRankSum=-9.538;QD=8.17;ReadPosRankSum=4.195;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:466,142:0.23:608
chr9	66457475	rs55747937	C	T	16442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.79;MQRankSum=-13.131;QD=23.13;ReadPosRankSum=3.218;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:292,419:0.59:711
chr9	66457480	rs77629849	G	A	8688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.596;ClippingRankSum=0.000;DB;DP=754;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-12.863;QD=11.55;ReadPosRankSum=1.236;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:488,264:0.35:752
chr9	66457535	rs74360065	T	C	7534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-5.284;QD=10.41;ReadPosRankSum=3.853;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:500,224:0.31:724
chr9	66457549	rs77706622	A	G	7317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=655;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-3.737;QD=11.40;ReadPosRankSum=3.004;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:438,204:0.32:642
chr9	66457562	rs79475537	C	T	6045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.435;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-0.866;QD=10.30;ReadPosRankSum=2.383;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:409,178:0.30:587
chr9	66457565	.	G	C	6090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915;ClippingRankSum=0.000;DP=565;ExcessHet=3.0103;FS=1.921;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=0.054;QD=10.82;ReadPosRankSum=1.566;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:390,173:0.31:563
chr9	66457585	rs78196222	G	T	5651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=2.597;QD=11.90;ReadPosRankSum=-2.003;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:320,155:0.33:475
chr9	66457588	rs10907850	T	C	1471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=5.154;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-2.907;QD=3.20;ReadPosRankSum=0.495;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:355,105:0.23:460
chr9	66457594	rs1809740	A	G	13056.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.72;MQRankSum=-1.901;QD=31.39;ReadPosRankSum=-0.438;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:43,373:0.90:416
chr9	66457601	rs79204868	G	T	3638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.486;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.58;MQRankSum=5.824;QD=9.21;ReadPosRankSum=-2.162;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:289,106:0.27:395
chr9	66457612	.	C	A	2796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.524;ClippingRankSum=0.000;DP=343;ExcessHet=3.0103;FS=3.695;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=6.443;QD=8.27;ReadPosRankSum=-1.440;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:257,81:0.24:338
chr9	66457613	rs144074368	C	G	2944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=5.406;QD=8.92;ReadPosRankSum=-1.240;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:246,84:0.25:330
chr9	66457620	rs74362572	C	T	2500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.529;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=55.43;MQRankSum=6.929;QD=8.25;ReadPosRankSum=-3.727;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:226,77:0.25:303
chr9	66457628	rs10907851	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=3.987;MLEAC=1;MLEAF=0.500;MQ=54.41;MQRankSum=-1.987;QD=2.37;ReadPosRankSum=-0.201;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:210,49:0.19:259
chr9	66457633	.	G	A	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.81;MQRankSum=5.759;QD=2.75;ReadPosRankSum=-0.532;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:201,36:0.15:237
chr9	66457652	rs1809741	C	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:146,28:0.16:174
chr9	66457664	rs78392104	T	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:117,26:0.18:143
chr9	66457675	rs75677823	G	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.45;MQRankSum=5.249;QD=3.19;ReadPosRankSum=-1.848;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:99,20:0.17:119
chr9	66457690	.	C	G	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=1.392;MLEAC=1;MLEAF=0.500;MQ=49.15;MQRankSum=3.607;QD=3.10;ReadPosRankSum=-0.634;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chr9	66457691	rs111684071	A	C	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:77,13:0.14:90
chr9	66457701	rs12380454	G	A	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.973;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=3.568;MLEAC=1;MLEAF=0.500;MQ=48.02;MQRankSum=-0.551;QD=2.30;ReadPosRankSum=0.079;SOR=1.525;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr9	66457730	.	A	C	670	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=3;MGOF=84;MMLQ=28;MQ=42.77;NF=0;NR=15;PP=670;QD=46.9847475031;SC=CTGGCGAAGAAAATGTCCTTC;SbPval=1.0;Source=Platypus;TC=45;TCF=2;TCR=43;TR=15;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:30,15:0.33:45
chr9	66457742	.	T	C	670	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=3;HapScore=3;MGOF=84;MMLQ=28;MQ=43.22;NF=0;NR=13;PP=670;QD=54.2131701959;SC=ATGTCCTTCCTCTGGGGAAAG;SbPval=1.0;Source=Platypus;TC=38;TCF=3;TCR=35;TR=13;WE=66457750;WS=66457720;set=Platypus	GT:AD:AF:DP	0/1:25,13:0.34:38
chr9	66499220	rs10907866	C	T	1110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.061;QD=5.97;ReadPosRankSum=1.997;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:122,64:0.34:186
chr9	66517198	rs10796698	C	A	5485.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:392,279:0.42:671
chr9	68372282	rs147422696	GC	TT	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.889;JOINED;MLEAC=1;MLEAF=0.500;MQ=51.27;MQRankSum=0.295;QD=13.27;ReadPosRankSum=-1.191;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:51,30:0.37:81
chr9	68372337	rs140269697	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:108,63:0.37:171
chr9	68372354	rs80225136	A	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-2.900;QD=6.66;ReadPosRankSum=2.695;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:120,64:0.35:184
chr9	68372367	rs79888407	C	A	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=56.05;MQRankSum=-4.044;QD=7.42;ReadPosRankSum=-0.076;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:110,65:0.37:175
chr9	68372401	rs75707116	C	T	1739.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.362;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-5.805;QD=12.43;ReadPosRankSum=-3.254;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:87,53:0.38:140
chr9	68372407	rs74366995	T	C	1570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-6.108;QD=12.57;ReadPosRankSum=-1.869;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:82,43:0.34:125
chr9	68372409	.	G	A	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.700;MLEAC=1;MLEAF=0.500;MQ=56.52;MQRankSum=-6.040;QD=12.45;ReadPosRankSum=-1.625;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:81,42:0.34:123
chr9	68372413	rs77458778	G	A	1491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=56.47;MQRankSum=-5.904;QD=12.33;ReadPosRankSum=-1.724;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:79,42:0.35:121
chr9	68372465	.	CA	TG	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=5.217;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.35;MQRankSum=-2.950;QD=11.48;ReadPosRankSum=1.666;SOR=1.628;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr9	68372470	rs141135096	A	G	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.091;MLEAC=1;MLEAF=0.500;MQ=52.17;MQRankSum=-2.153;QD=12.89;ReadPosRankSum=0.868;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:29,17:0.37:46
chr9	68372476	rs140148795	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.990;MLEAC=1;MLEAF=0.500;MQ=50.69;MQRankSum=-1.861;QD=11.97;ReadPosRankSum=1.647;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr9	68409477	.	A	T	42	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=2;MGOF=16;MMLQ=23;MQ=50.79;NF=4;NR=1;PP=42;QD=15.3542425094;SC=CACGAGGAAAACCGTCCCTGT;SbPval=0.7;Source=Platypus;TC=23;TCF=18;TCR=5;TR=5;WE=68409485;WS=68409467;set=Platypus	GT:AD:AF:DP	0/1:18,5:0.22:23
chr9	68409659	rs34008877	C	G	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.938;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-7.975;QD=2.03;ReadPosRankSum=-0.143;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:129,17:0.12:146
chr9	68409677	rs113826078	A	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=7.446;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-8.471;QD=4.61;ReadPosRankSum=-1.339;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:122,24:0.16:146
chr9	68409701	rs112537853	C	T	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.675;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-11.003;QD=4.94;ReadPosRankSum=-4.107;SOR=0.999;set=HC	GT:AD:AF:DP	0/1:145,31:0.18:176
chr9	68409702	rs79189381	C	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.242;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-1.766;QD=1.53;ReadPosRankSum=0.955;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:153,19:0.11:172
chr9	68409713	.	A	AACAC	648.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-9.691;QD=3.75;ReadPosRankSum=-1.108;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:145,28:0.16:173
chr9	68409731	rs80207175	A	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=3.969;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-11.245;QD=3.95;ReadPosRankSum=3.531;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:124,27:0.18:151
chr9	68409745	rs73649016	C	G	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.753;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-9.821;QD=4.98;ReadPosRankSum=3.405;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:102,28:0.22:130
chr9	68409783	rs202031579	A	C	678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.992;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.963;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-8.177;QD=7.46;ReadPosRankSum=0.077;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr9	68409789	rs79786341	G	C	820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-8.615;QD=9.02;ReadPosRankSum=0.089;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr9	68415193	rs80256038	T	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:100,96:0.49:196
chr9	68415216	rs71234092	G	A	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:193,108:0.36:301
chr9	68415231	rs140259548	T	G	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=1.448;QD=0.55;ReadPosRankSum=1.500;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:331,56:0.14:387
chr9	68415293	rs35922576	T	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-13.714;QD=0.28;ReadPosRankSum=1.318;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:547,59:0.10:606
chr9	68415386	rs1844035	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chr9	68415388	rs4928837	A	T	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:70,64:0.48:134
chr9	68427786	rs4300101	C	T	4494.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:62,197:0.76:259
chr9	68427877	rs4568707	G	A	4823.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:93,215:0.70:308
chr9	68427938	rs113084687	CAT	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-3.588;QD=1.79;ReadPosRankSum=-0.758;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:90,12:0.12:102
chr9	68427956	rs4316243	T	C	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr9	68428005	.	G	C	141	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=1;MGOF=33;MMLQ=28;MQ=52.29;NF=3;NR=8;PP=141;QD=15.9792011407;SC=ATTTTGGTTAGTGTATTACCA;SbPval=0.22;Source=Platypus;TC=41;TCF=6;TCR=35;TR=11;WE=68428013;WS=68427995;set=Platypus	GT:AD:AF:DP	1/0:30,11:0.27:41
chr9	68433462	rs111392331	T	C	3032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=1058;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=-0.692;QD=2.92;ReadPosRankSum=1.409;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:864,176:0.17:1040
chr9	68433464	rs79004307	C	T	9562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DB;DP=1049;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-8.565;QD=9.14;ReadPosRankSum=1.497;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:715,331:0.32:1046
chr9	68433468	rs75281072	G	C	17048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.429;ClippingRankSum=0.000;DB;DP=1050;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.00;MQRankSum=-15.585;QD=16.35;ReadPosRankSum=-1.643;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:572,471:0.45:1043
chr9	68433481	rs112175502	T	TCTC	1074.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.668;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-14.148;QD=1.10;ReadPosRankSum=-6.695;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:871,103:0.11:974
chr9	68433510	rs75661796	C	G	4420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;ClippingRankSum=0.000;DB;DP=869;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.75;MQRankSum=-13.617;QD=5.24;ReadPosRankSum=6.287;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:577,266:0.32:843
chr9	68433511	rs202018667	C	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=52.63;MQRankSum=-6.942;QD=0.90;ReadPosRankSum=-3.882;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:805,72:0.08:877
chr9	68433520	.	T	C	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.287;ClippingRankSum=0.000;DP=844;ExcessHet=3.0103;FS=0.916;MLEAC=1;MLEAF=0.500;MQ=51.92;MQRankSum=-6.502;QD=1.19;ReadPosRankSum=-2.010;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:761,82:0.10:843
chr9	68433523	rs62543350	T	C	12258.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:413,411:0.50:824
chr9	68433537	rs74819687	T	G	17596.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:303,541:0.64:844
chr9	68433548	.	C	T	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709;ClippingRankSum=0.000;DP=972;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.11;MQRankSum=-7.652;QD=1.03;ReadPosRankSum=6.323;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:857,88:0.09:945
chr9	68433550	rs144797473	A	G	940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.27;MQRankSum=-7.929;QD=0.98;ReadPosRankSum=7.042;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:875,88:0.09:963
chr9	68433556	rs76632075	G	T	5838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=1026;ExcessHet=3.0103;FS=3.660;MLEAC=1;MLEAF=0.500;MQ=52.18;MQRankSum=2.398;QD=5.87;ReadPosRankSum=-1.277;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:710,284:0.29:994
chr9	68433568	rs139880713	T	C	3668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.488;ClippingRankSum=0.000;DB;DP=1051;ExcessHet=3.0103;FS=7.515;MLEAC=1;MLEAF=0.500;MQ=52.08;MQRankSum=-15.314;QD=3.62;ReadPosRankSum=-5.288;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:773,240:0.24:1013
chr9	68433620	rs62543351	C	T	6613.77	.	AC=1;AF=0.500;AN=2;DB;DP=901;set=Intersection	GT:AD:AF:DP	0/1:494,352:0.42:846
chr9	68433625	rs139088975	A	G	2871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=877;ExcessHet=3.0103;FS=4.512;MLEAC=1;MLEAF=0.500;MQ=52.30;MQRankSum=-8.113;QD=3.74;ReadPosRankSum=3.796;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:627,141:0.18:768
chr9	68433641	rs78330154	G	T	5562.77	.	AC=1;AF=0.500;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	0/1:438,183:0.29:621
chr9	68433673	rs150998881	A	G	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.586;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=6.158;MLEAC=1;MLEAF=0.500;MQ=53.49;MQRankSum=-8.271;QD=3.27;ReadPosRankSum=-0.675;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:324,86:0.21:410
chr9	68433701	rs62543352	A	G	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:116,71:0.38:187
chr9	69002188	rs2374889	T	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-0.741;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chr9	69002193	.	T	C	671	.	AC=1;AF=0.500;AN=2;BRF=0.05;FR=0.5000;HP=1;HapScore=1;MGOF=23;MMLQ=23;MQ=60.0;NF=34;NR=3;PP=671;QD=19.0748976364;SC=AATGATTGTCTGTCAAACAGG;SbPval=0.97;Source=Platypus;TC=126;TCF=102;TCR=24;TR=37;WE=69002208;WS=69002187;set=Platypus	GT:AD:AF:DP	1/0:89,37:0.29:126
chr9	69002294	rs79965448	C	T	5633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=0.377;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:349,158:0.31:507
chr9	69002304	rs78546776	C	A	4860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=572;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=-0.961;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:384,185:0.33:569
chr9	69002317	rs76266132	T	C	6805.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:430,205:0.32:635
chr9	69002413	rs62555122	T	C	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.858;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:236,100:0.30:336
chr9	69002423	rs62555123	G	A	2904.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.395;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:201,82:0.29:283
chr9	69120693	rs200239202	T	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.25;MQRankSum=-1.905;QD=3.89;ReadPosRankSum=-0.773;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr9	71081175	rs187820551	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	71538069	rs2027208	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	71555492	rs10746973	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	71555522	rs10746974	C	T	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	71629038	.	C	CGCGGCGGCG	1065.73	.	AC=2;AF=1.00;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	71650752	rs2481598	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	71667986	rs7865353	G	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	71714693	rs10121021	C	T	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	71789156	rs13301644	C	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	71789386	rs144607139	T	TCGTGAG	2442.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;MQ=60.32;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	71820008	rs2498440	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	71827618	rs34883177	T	C	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	71831398	rs2498417	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	71843023	rs2309428	C	A	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	71849314	rs202100183	CT	C	829.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.259;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.714;QD=11.53;ReadPosRankSum=0.458;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,61:0.85:72
chr9	71852760	rs2309421	G	A	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	71853465	rs75392135	G	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	71854727	rs10867196	C	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	71854737	rs72187140	TAAAC	T	1875.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	71854769	rs2993823	C	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	71862975	rs2282336	C	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	71862987	rs2095876	G	A	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	71986315	rs1034239	TG	CA	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	71990645	rs4351475	C	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	72000679	rs369091837	CTTT	C	876.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.274;MLEAC=1;MLEAF=0.500;MQ=60.85;MQRankSum=0.548;QD=25.05;ReadPosRankSum=0.614;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:2,33:0.94:35
chr9	72003036	rs867366	T	C	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	72064749	rs2781532	T	C	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	72132199	rs11139063	G	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	72338180	rs11139996	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	72349174	.	TAAAA	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.87;ReadPosRankSum=0.431;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr9	72373624	rs10735564	A	G	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	72373775	rs34814489	TA	T	79.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=13.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	72374677	rs2274745	T	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	72374969	rs2252130	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	72501962	rs4548246	T	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	72740974	rs1927112	A	G	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr9	72741312	rs1998972	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	72783608	rs10780871	T	C	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	72785653	rs4744587	T	G	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	72882642	rs7027209	A	G	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	72893298	rs10714271	GT	G	327.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	72897434	rs1180116	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	72901096	rs1180123	T	C	4286.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr9	72933958	rs7025228	G	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	72965438	rs1536957	A	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	73002648	rs7020167	C	G	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	73234066	rs7849400	G	A	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	73234884	rs3829095	G	C	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	73240312	rs7035025	C	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	73250037	rs4322073	C	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr9	73250378	rs71505401	A	ATT	42.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr9	73255337	rs1538670	A	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	73255432	rs1538669	G	C	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	73408518	rs10868890	T	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	73442635	rs1034539	G	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	73442724	rs1034538	C	T	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	73457832	rs1337031	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	73457861	rs1337030	A	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	73458045	rs3833697	T	TA	1032.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:6,55:0.90:61
chr9	73461337	rs7862440	T	A	8353.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	73461558	rs10868907	G	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	74300311	.	TAA	T	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.637;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr9	74314210	rs4263836	A	T	149.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	74314368	rs5898223	T	TA	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.134;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr9	74331267	rs5898225	GA	G	47.52	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr9	74360395	rs76670837	T	C	7044.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	74477617	rs10573097	TAAGA	T	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	74526540	rs4744647	T	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	74526978	rs10580392	GCA	G	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	74561883	rs10120169	G	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	74622941	rs11143055	G	T	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	74671719	rs13295099	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	74671828	rs36059196	C	CT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=1.112;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr9	74675343	rs10869090	A	G	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	74828718	.	CA	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.555;QD=0.97;ReadPosRankSum=1.929;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr9	74828973	rs17494333	A	G	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	74846187	rs11442621	T	TA	625.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:5,37:0.88:42
chr9	74974534	rs3012505	C	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	74975136	rs2809270	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	74975711	rs1853276	T	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=25.64;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	74979593	rs2224603	G	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	75420448	rs111880209	CT	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.907;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=3.595;QD=0.71;ReadPosRankSum=-1.361;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:91,26:0.22:117
chr9	75521060	rs348472	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	75543974	rs8187922	T	TAA	2272.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	75554895	rs33988381	A	ATT	345.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=-0.290;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr9	75554982	rs348449	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	75781246	rs10512015	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	75782510	rs1342017	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	75782555	rs17058570	C	G	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	75783937	rs3739959	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	77230477	rs3904058	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	77245162	rs2146777	A	T	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	77245348	rs139770757	CG	C	2476.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	77386857	rs34783728	T	TAA	2252.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;MQ=60.18;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	77391060	rs2274923	T	C	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	77397519	rs12339024	T	C	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	77407736	rs7858755	A	G	2101.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	77415284	rs7859201	A	C	5963.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	77425638	rs17060550	A	C	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	77427173	rs4300062	T	C	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	77442616	rs7045949	C	T	3381.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	77457028	.	G	GA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.473;QD=1.20;ReadPosRankSum=0.607;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr9	77502188	.	A	T	1480.77	.	AC=2;AF=1.00;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	77668969	rs773145	G	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	77681179	rs7852863	C	T	6477.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	77684690	rs3752955	A	C	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr9	77692555	rs60305501	CT	C	343.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr9	77697929	rs2273767	C	G	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	77703431	rs73544571	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	77745424	rs2295861	T	C	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	77749436	rs10869508	T	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	77752675	rs2025159	A	G	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	78600898	rs4322070	C	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	78601268	rs1538843	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	78638797	rs34417623	C	T	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	78748962	rs141353765	ACT	A	3682.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	78790153	rs4281168	A	G	1079.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:8,43:0.84:51
chr9	78799566	rs1537183	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	78803466	rs7046850	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	78803512	rs10521468	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	78803931	rs2270571	A	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	78804711	rs139022349	CTACTTTCAGGACTAAT	C	3592.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	78808034	rs17776908	A	G	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	78808329	rs3077117	G	GAAAA	837.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=39.89;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	78808344	.	G	GA	63.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.10;ReadPosRankSum=0.812;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr9	78819998	rs10869732	T	C	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	78820011	rs7851394	G	A	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr9	78820265	rs10869733	G	C	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=5.186;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	78820270	rs10781345	T	C	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=5.838;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	78848208	rs78870412	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	78848542	rs903545	C	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	78848554	rs7854396	G	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	78907078	rs1546151	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	78907125	rs1546150	C	T	3246.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	78907134	rs3077145	AT	A	3531.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;MQRankSum=0.226;QD=39.24;ReadPosRankSum=1.155;SOR=0.615;set=HC	GT:AD:AF:DP	1/1:1,89:0.99:90
chr9	78910108	rs13283901	A	G	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	78910401	rs10869747	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	78925814	rs2257775	C	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	78936564	rs11144829	G	A	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	78937974	rs3001772	C	T	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	78942956	rs2259969	A	G	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	79003324	rs2501926	G	A	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	79003440	rs2501924	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	79009106	rs2490582	A	C	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	79009139	rs3739729	A	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	79240050	rs700809	T	C	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	79244208	rs370679936	TA	T	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=7.101;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.351;QD=2.83;ReadPosRankSum=1.104;SOR=1.888;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr9	79253347	rs3739518	T	C	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	79256917	.	TA	T	335.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.944;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:140,60:0.30:200
chr9	79814799	rs12552898	A	G	143.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	79820141	.	C	CT	1040.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	79827791	rs10869912	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	79842278	rs139845549	A	G	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	79888396	rs2050831	A	G	67.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	79896655	.	GTA	G	54	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=21;MQ=60.0;NF=2;NR=1;PP=54;QD=20.3333333333;SC=GTGTATATGTGTATATATATA;SbPval=0.57;Source=Platypus;TC=12;TCF=9;TCR=3;TR=3;WE=79896664;WS=79896645;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr9	79897256	rs11145367	A	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	79920438	rs2275550	G	A	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	79922839	rs2275549	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	79922845	rs3216012	C	CT	452.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr9	79932738	rs11145384	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	79935953	rs1890899	A	G	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	79954410	rs55937672	G	T	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.58;ReadPosRankSum=-1.873;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr9	79974399	rs7043232	G	A	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	79983206	rs10491841	A	G	175.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	79986057	rs3737289	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	80022415	rs2025846	A	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	80043752	rs12551663	C	T	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	80049565	rs2281938	G	A	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	80912115	rs2277148	G	C	5809.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	80915392	rs3824360	G	A	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	80915403	rs10121107	A	T	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	80917070	rs3739472	C	T	182.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	80917096	rs3739473	C	T	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	80919756	rs3739474	T	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	80921446	rs944513	G	T	1397.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	80932574	rs3780194	T	A	2292.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	82187750	rs1934610	A	G	11466.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr9	82189914	rs2791566	T	C	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	82308670	rs7025437	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	82320887	rs4877147	A	T	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	82333000	rs7022923	G	A	10092.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=42.41;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr9	82333010	rs7039108	T	C	9476.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=44.70;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	82335240	rs10217418	A	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.57;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	82335293	rs71979610	GT	G	1193.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.16;ReadPosRankSum=-1.637;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr9	82335295	rs375334976	GT	G	1150.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.68;ReadPosRankSum=-1.766;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr9	84202822	.	C	CGTGTGTGTGTGTGTGTGTGTCATCCCGCCTGT	559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.997;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=2.336;MLEAC=1;MLEAF=0.500;MQ=62.98;MQRankSum=0.057;QD=17.49;ReadPosRankSum=-0.960;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr9	84202884	rs11792087	T	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	84214974	rs7039820	T	G	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	84248203	rs369850854	CGT	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-1.041;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:14,12:0.46:26
chr9	84267021	rs3045544	TAC	T	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=0.120;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr9	84275256	rs36108203	C	CA	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.827;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:58,25:0.30:83
chr9	84530065	.	CT	C	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=-0.245;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:36,27:0.43:63
chr9	84604599	rs145158256	TAATG	T	3658.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	84606647	rs112107496	A	G	3422.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	84607758	rs10867826	T	A	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	85597720	.	CAG	C	847.73	.	AC=1;AF=0.500;AN=2;DP=183;set=Intersection	GT:AD:AF:DP	0/1:67,40:0.37:107
chr9	85677254	rs10573978	AG	A	3528.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:7,133:0.95:140
chr9	85862792	rs11292389	CT	C	1937.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	85862819	rs78846594	G	A	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	85905786	rs942281	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	85913481	rs12683854	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	85946923	rs17402202	C	T	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	85987879	rs57558822	GA	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.918;QD=0.69;ReadPosRankSum=-0.267;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:135,32:0.19:167
chr9	86004828	rs144044729	AAC	A	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.56;ReadPosRankSum=-0.414;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr9	86238086	rs2811903	T	C	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	86241489	rs2780977	A	G	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.08;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	86243933	rs2811905	G	T	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	86256381	rs66822704	CATGAT	C	9983.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	86256431	rs2811917	T	A	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr9	86278773	rs9314722	T	C	3391.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	86279015	rs2781003	C	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.79;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	86279025	rs2781002	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	86279838	.	CAAAAAA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=0.150;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:24,5:0.17:29
chr9	86281195	rs12344615	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	86284178	rs1044175	C	A	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	86292938	.	C	CTTT	154.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.253;QD=15.48;ReadPosRankSum=-1.013;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr9	86327898	rs10119344	C	T	7543.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	86457387	rs71365387	G	GT	170.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.15;MQRankSum=-0.235;QD=15.46;ReadPosRankSum=-0.960;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr9	86468715	rs295274	A	T	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	86504005	rs13289566	C	T	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	86592026	rs296886	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	86893071	rs7858075	T	C	2663.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=1.824;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	86893313	rs11140490	A	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	86894087	rs35110452	C	CA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-1.737;QD=1.61;ReadPosRankSum=0.528;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr9	86895089	.	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.534;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr9	86895853	rs10868135	T	C	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	86900926	rs7853758	G	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	86909082	rs10868137	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	86917007	rs17087056	C	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	86917088	rs4877836	T	C	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	86920117	rs35729465	G	GA	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.326;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.892;QD=9.07;ReadPosRankSum=0.558;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:11,31:0.74:42
chr9	86920236	rs7867504	T	C	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=25.50;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr9	87285915	rs1187326	C	T	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	87285992	rs1211166	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	87360106	rs144586764	ACACCT	A	1898.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	87475806	rs143811359	GTTTATTTATTTA	GTTTA,G	1934.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:44
chr9	87563252	rs1078947	T	C	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	88276068	rs10868336	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	88292506	.	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=2.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=0.700;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:106,23:0.18:129
chr9	88401021	rs11141102	A	G	5441.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	88631382	rs10651022	C	CGTT	1224.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	88635939	rs6559892	G	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	88636887	rs7450	G	A	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	88667569	rs11141198	T	C	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	88667582	rs10780743	T	G	4048.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	88842721	rs117703701	G	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	88881000	rs140993292	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=52.17;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	88882750	rs34344174	T	TA	59.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=11.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	88924057	rs4520250	A	C	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	88924985	rs5898925	C	CT,CTT	957.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=8.919;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=0.361;QD=16.23;ReadPosRankSum=0.395;SOR=0.054;set=HC	GT:AD:AF:DP	1/2:7,36,16:0.61,0.27:59
chr9	88925534	rs5898926	ATG	A	904.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	88925774	rs11792804	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	89763851	rs458983	C	G	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	90256827	rs3118846	A	G	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	90258262	rs10630837	C	CT	925.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.698;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:42,77:0.65:119
chr9	90264758	rs2274605	C	T	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	90265015	rs3818584	C	T	6132.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	90296193	rs72033969	C	CAAAAAAAA	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;QD=46.07;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	90315286	rs7044579	G	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	90316605	rs12056997	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	90316635	rs148030008	ATT	A,AT	1100.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=1.306;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:3,23,44:0.33,0.63:70
chr9	90316710	rs3118858	T	C	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	90322023	rs1056719	G	A	20345.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,768:1.00:768
chr9	90343780	rs2378757	A	C	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:1,170:0.99:171
chr9	90387628	rs7024674	G	A	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	90387805	rs9410955	A	C	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	90388370	rs7853691	G	A	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	90388539	rs10735592	T	A	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	90401638	rs7039358	C	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	90534156	rs202161190	T	TTCTTGTCTCCCAGCGTCA	5726.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:6,190:0.97:196
chr9	90559129	rs7027067	G	A	248.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	90586043	rs622418	G	A	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	90588903	rs665983	C	T	7090.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	90589016	rs666459	A	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	90589502	rs576555	G	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	90744936	rs200880066	T	C	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=50.96;MQRankSum=-2.703;QD=1.24;ReadPosRankSum=-0.321;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr9	90748837	rs10868714	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	91083260	rs376917926	CT	C	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.859;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.909;QD=3.06;ReadPosRankSum=0.685;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:91,62:0.41:153
chr9	91262296	rs4543636	G	A	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr9	91262343	rs5899049	A	ATGG	5532.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	91262493	rs72751473	AG	CT	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	91262597	rs7862585	A	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	91360612	rs28624420	T	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	91606522	rs11795137	T	A	3984.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	91628546	rs944483	A	C	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	91652414	rs2282125	A	T	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	91653257	rs144228410	TAAA	T	1393.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=30.30;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	91653287	rs944481	G	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	91656963	rs3750399	T	C	5728.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	91666812	rs7021743	C	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	91667136	rs7025214	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	91927386	rs3211672	C	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	91931080	rs3211691	G	A	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	91934787	rs3763616	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	91953252	rs7851988	T	C	176.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	91978539	rs13297725	A	T	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	92003749	rs7465881	A	G	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr9	92020433	rs7856677	G	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	92219921	rs3138499	A	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	92220288	rs3138503	C	T	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	93639803	rs1760132	A	G	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	93657761	rs158689	A	T	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	94456490	rs923772	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	94456643	rs923771	G	C	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	94456705	rs923770	T	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	94456714	rs923769	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.66;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	94485928	rs2230578	C	T	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	94486321	rs10761129	C	T	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	94486688	rs10992063	G	A	10863.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr9	94487459	rs10992065	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	94939615	rs4744122	T	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	94939835	rs76864904	G	A	10185.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	94939981	rs9299400	G	A	15473.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr9	94940099	rs146209980	AC	A	5056.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;MQ=60.43;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	94949028	rs117210051	C	G	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	94951819	rs3858097	A	G	6646.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	94951926	rs145495065	A	G	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.96;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	94951930	rs148856281	G	A	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.19;SOR=1.638;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	94952792	rs78946608	C	T	8523.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	94985528	rs72750411	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	94985637	rs556155	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	94991509	rs1175931	A	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	95002842	.	C	CT	47	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5335;HP=13;HapScore=3;MGOF=42;MMLQ=16;MQ=59.46;NF=3;NR=2;PP=47;QD=10.4;SC=ATGCCTGGCCCTTTTTTTTTT;SbPval=0.8;Source=Platypus;TC=10;TCF=5;TCR=5;TR=5;WE=95002850;WS=95002832;set=Platypus	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	95005537	rs2230405	A	C	8445.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr9	95012068	rs41280223	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	95019171	rs72750437	C	A	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	95021399	rs72750441	T	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	95022383	rs41307467	C	T	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	95028001	rs80173221	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	95039956	.	TAAAA	T,TAAA	619.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=15;set=Intersection	GT:AF:DP	1/1:1.00:15
chr9	95039958	.	AAA	TTT	455	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=16;HapScore=4;MGOF=3;MMLQ=28;MQ=60.0;NF=7;NR=1;PP=455;QD=64.8084843578;SC=CCTGTTTTTAAAAAAAAAAAA;SbPval=0.91;Source=Platypus;TC=15;TCF=11;TCR=4;TR=8;WE=95039968;WS=95039946;set=Platypus	GT:AD:AF:DP	1/1:7,8:0.53:15
chr9	95039960	.	A	ATTT	619.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.32;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	95042917	rs3736835	G	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	95050656	rs143145342	C	CAAG	951.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	95051799	rs72750465	C	T	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	95054619	rs72750468	C	T	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	95054708	rs72750469	C	G	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	95055917	rs28365880	A	T	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	95060494	rs3831004	T	TAAC	6405.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	95060630	rs3736836	A	G	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	95063096	.	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=6.803;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.566;QD=6.27;ReadPosRankSum=1.675;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	95063749	rs72750479	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	95063947	rs921122	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	95068046	rs1133908	C	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	95072907	rs15717	G	C	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	95076665	rs2236344	C	G	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	95077470	rs61742574	T	A	6795.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	95077827	rs17678735	G	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	95080879	rs3737147	T	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	95083833	.	A	AT	147.87	.	AC=2;AF=1.00;AN=2;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	95084066	rs2274967	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	95088150	.	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	95088255	rs142766418	G	T	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	95100125	rs41277739	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	95147840	rs1053441	T	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	95147894	rs41297183	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	95148084	rs2236529	C	A	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	95155274	rs72752444	A	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	95155563	rs2274966	C	A	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	95177679	.	TA	T	2057.73	.	AC=2;AF=1.00;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	95179179	rs34860658	C	T	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	95219597	rs4744132	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	95226702	rs4744133	G	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	95228776	rs41278699	C	A	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	95237024	.	CTCATCA	C	3917.73	.	AC=2;AF=1.00;AN=2;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	95237222	rs3739606	G	T	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	95274261	rs2296666	A	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	95274338	rs2296667	A	G	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	95277356	rs34758505	C	T	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	95284982	rs10120210	T	G	4225.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	95362665	rs1874128	G	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	95362715	rs80221439	G	C	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	95373884	rs1552908	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	95375468	rs41312236	G	A	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	95378353	rs2274413	G	A	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	95396712	rs2277170	G	A	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	95397418	rs1111047	C	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	95400204	rs117751089	G	T	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	95400223	rs78584251	C	G	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	95400642	rs41266683	C	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	95403118	rs41266685	C	A	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	95411725	rs72756427	G	A	4296.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	95432055	rs2277165	C	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	95480251	rs79574551	G	A	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	95481975	rs56339669	C	G	8489.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr9	95482536	rs41273374	G	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	95526667	rs2277164	G	C	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	95580745	rs71364316	GT	G	1743.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.345;QD=18.75;ReadPosRankSum=-0.781;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:2,91:0.98:93
chr9	95766471	rs6479445	A	T	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	95772467	rs74763709	G	A	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	95772738	rs36150183	GGAGA	G	2112.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=43.12;SOR=1.755;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	95772799	rs151317911	A	AAGAGAC	1003.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	95780465	rs7048975	A	G	7340.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr9	95782667	rs11790517	C	T	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	95784485	rs10821054	A	T	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	95794946	rs150126405	TCCTCCCGCCCACTCCA	T	2349.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	95797999	rs4073460	C	T	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	95872744	rs3819011	C	T	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	95874070	rs2027585	G	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	95874428	rs10821071	G	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	95875556	rs2298242	G	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	95875575	rs2298243	G	A	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	95887320	rs2275848	G	T	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr9	95896571	.	C	CGCCCGCCCCCG	478.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	95992213	rs7871272	A	G	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,127:0.98:129
chr9	96000622	rs1539670	C	T	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	96015256	rs4744201	C	T	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr9	96015377	rs4744202	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	96015398	rs4744203	A	T	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	96019118	rs10122466	A	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	96021312	rs10761203	G	A	39327.77	.	AC=2;AF=1.00;AN=2;DB;DP=1528;set=Intersection	GT:AD:AF:DP	1/1:0,1521:1.00:1521
chr9	96024794	rs7854000	T	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	96024859	rs1936403	A	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	96025717	rs10649709	C	CAG	2572.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	96025771	rs6479467	G	A	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	96026122	rs147436035	T	TG	1129.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	96030230	rs7856268	T	C	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	96031262	rs1936401	T	C	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	96051521	rs2169756	A	G	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	96052179	rs2306183	G	A	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	96097588	rs376281253	A	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	96097747	rs78436873	C	T	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	96209943	rs10821128	T	C	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	96214928	rs1055710	G	A	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	96238578	rs10821135	C	T	4998.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	96238731	rs10821136	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	96289269	rs10739950	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	96292025	rs10761232	A	T	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	96392182	rs10992812	G	A	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	96398508	rs2398851	A	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	96407822	rs6479500	A	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	96407848	rs7851271	A	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	96415653	rs3750354	C	T	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	96420390	rs3763605	A	G	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	96422420	rs10992836	T	C	8351.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr9	96425138	rs3750358	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	96425363	rs3750359	G	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	96425777	rs7036592	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	96426049	rs112327078	T	TCACA	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	96428457	rs10992840	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	96439004	rs149736720	C	CCCTGCCTCCACCACA	9495.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	97054889	.	T	TTTGTGTGTG,TTTGTGTG	722.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=39;set=Intersection	GT:AF:DP	1/1:1.00:17
chr9	97080944	rs150455117	GAGA	G	2288.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.88;QD=44.01;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	97081795	rs150662309	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	97090722	rs7019931	A	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	97208983	rs34491291	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	97329737	rs10657369	C	CAG	5017.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	97329822	rs2987883	A	G	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	97349666	rs573212	C	G	2692.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	97365720	rs1769257	T	C	4480.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	97369149	rs1769259	C	T	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	97369149	.	CTG	TTA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=20;MQ=60.0;NF=63;NR=43;PP=2947;QD=20;SC=GTCAAAGTCCCTGGCGTAGCC;SbPval=0.49;Source=Platypus;TC=108;TCF=65;TCR=43;TR=106;WE=97369159;WS=97369139;set=Platypus	GT:AD:AF:DP	1/1:2,106:0.98:108
chr9	97369151	rs1042144	G	A	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	97380043	rs8192689	G	A	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	97420023	rs7028725	G	A	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	97426330	rs34080503	T	TA	1032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=9.47;ReadPosRankSum=-0.347;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:36,73:0.67:109
chr9	97426576	rs28436028	A	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	97427581	rs12344517	T	C	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=1.224;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	97427581	.	TCT	CCA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=15;MQ=60.0;NF=43;NR=66;PP=2947;QD=20;SC=GAAAATTAGGTCTCTTAAAAA;SbPval=0.5;Source=Platypus;TC=115;TCF=45;TCR=70;TR=109;WE=97427591;WS=97427571;set=Platypus	GT:AD:AF:DP	1/1:6,109:0.95:115
chr9	97427583	rs34540802	T	A	5629.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	97555228	rs55826214	GA	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.975;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:26,12:0.32:38
chr9	97768286	rs10761364	T	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	97822941	rs1888944	T	C	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	97849090	rs4657	A	G	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	97873435	rs2404457	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	97873957	rs4647534	A	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr9	97885616	rs881791	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	97933252	rs3737142	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	98208444	rs28401363	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	98209594	rs357564	G	A	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	98678164	rs683829	G	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	98685797	rs3824492	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	98691137	rs2274654	T	C	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	98694641	rs10760675	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.08;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	98734670	rs3088294	C	T	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	98734891	rs3780574	A	T	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	98766861	rs12683634	G	T	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	99003264	rs2066485	C	T	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	99013663	rs408876	A	G	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	99060704	rs2066478	C	T	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	99064112	rs8190485	A	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.809;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	99064117	rs8190484	C	T	3939.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	99064296	rs2066480	C	T	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	99064396	rs2066484	C	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	99064425	rs2066474	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	99327131	.	G	A	3331.77	.	AC=2;AF=1.00;AN=2;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	100049970	rs2493444	G	C	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	100049970	.	GTA	CTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=66;NR=42;PP=2947;QD=20;SC=TTTTGCCCGCGTATCTCACGT;SbPval=0.49;Source=Platypus;TC=112;TCF=69;TCR=43;TR=108;WE=100049980;WS=100049960;set=Platypus	GT:AD:AF:DP	1/1:4,108:0.96:112
chr9	100049972	rs2487874	A	C	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	100054705	rs2615143	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	100054969	rs2615144	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	100069511	rs35787618	GC	G	2989.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	100069759	rs10981537	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	100069900	rs3214072	A	G	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	100070351	rs12683119	G	C	8248.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	100070435	rs2401382	C	T	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	100075401	rs10981557	C	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	100075702	rs7856924	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	100087345	rs3747496	A	G	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	100088971	rs10981625	G	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	100092515	rs7026893	C	T	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	100092968	rs113264216	A	AGAGGAG	2595.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=46.35;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	100093102	rs7847332	T	G	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;MQ=61.15;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	100105735	rs1947717	T	C	7169.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	100105782	rs2061634	C	G	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr9	100107884	rs10122063	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	100108003	rs9696167	T	C	174.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.85;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr9	100116833	rs10125198	G	C	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	100124787	rs3802471	T	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	100132194	rs2169456	C	A	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	100388119	rs10817858	G	T	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	100616583	rs3021523	T	C	11444.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr9	100616700	.	A	AGCC	2071.73	.	AC=2;AF=1.00;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	1/1:5,80:0.94:85
chr9	100617375	rs7046645	T	C	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	100684534	rs10984377	A	G	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	100684645	rs3824496	C	T	6291.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr9	100684719	rs3183928	A	C	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr9	100684757	rs3183927	A	G	4353.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	100689693	rs1059003	A	G	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	100692237	rs79474766	T	TA	468.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	100767530	rs1131641	C	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	100774646	rs987142	A	T	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	100881525	rs2761063	C	G	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	101533220	rs6415847	C	T	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr9	101539865	rs7035722	G	C	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	101546578	rs12056975	G	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	101558444	rs76903503	G	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	101558609	rs138948716	G	A	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	101585444	rs2295922	G	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	101599558	rs10119864	A	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	101606549	rs1885608	G	T	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	101784438	rs3739800	A	G	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	101785435	rs72737281	T	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	101796906	rs11281933	T	TCTCCCTC	98.25	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr9	101810339	rs869776	T	C	65.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	101814626	rs4142986	C	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	101818716	rs11788317	T	C	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	101822220	rs4480177	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	101984936	rs170623	C	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	102068344	rs790287	C	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	102068770	rs7871150	T	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	102068832	rs170462	G	A	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	102068912	rs182704	C	T	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	102589219	rs3832634	G	GT	2058.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	102591042	rs12344570	A	G	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	102595685	rs10988904	C	T	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	102625834	rs7032301	T	C	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	102690883	rs6478987	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr9	102713580	rs1997368	G	A	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	102713591	rs3739794	T	C	6536.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	102780721	rs4743375	T	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	102814585	rs202031558	T	TA	510.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.232;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.417;QD=19.64;ReadPosRankSum=-0.579;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr9	102860928	rs6479001	G	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	103015184	rs2245216	T	C	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	103054951	rs2787374	T	C	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	103204577	rs35438121	C	G	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	103207654	rs73655549	G	A	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	103235853	rs77849433	G	T	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	103260966	.	T	TAC	1396.73	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:6,42:0.88:48
chr9	103275692	.	T	TA	99.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr9	103312290	rs2274882	C	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	104124664	rs2229594	C	T	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	104133628	rs1572983	C	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	104306988	.	T	TA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.544;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr9	104313898	.	C	CATTATTGATATATATTTTTCTCCTTTTAGATTCTTATAGATCAAATTTAGGAGACAGAATA	407.74	.	AC=2;AF=1.00;AN=2;DP=0;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=0.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr9	104324545	rs10521057	G	A	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	104341796	rs17774987	T	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	104375538	rs17189821	T	C	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	104385711	rs10989563	CA	TG	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	104385800	rs10989565	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	104385813	rs10989566	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	104390789	rs10819955	C	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	104432293	rs1323434	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	104432873	rs942142	T	G	11395.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	104433034	rs10512285	A	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	104433235	rs10989589	C	T	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	104433436	rs1885980	T	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	104449063	rs2506354	C	T	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	104449098	rs10989591	C	T	3249.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	104499575	rs1337677	T	C	13590.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr9	105757756	rs1341205	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	106857908	rs3739736	G	A	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	106860969	rs10991107	T	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	106878318	rs35784229	TCTC	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	106885332	rs7350223	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	106885616	rs10991114	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	106888838	rs146077014	ATTAT	A	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	106894211	rs3780535	A	C	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	106896809	rs7872034	G	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=25.84;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr9	106896874	rs11281153	T	TATATTATAA	1894.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	107266596	rs7049042	T	C	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	107266774	rs1949755	C	G	7207.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr9	107266844	rs1403812	A	G	5657.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	107266943	rs1403811	G	A	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	107267352	rs7847413	T	C	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	107298444	rs41305445	C	T	10703.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr9	107299001	rs41304943	C	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	107456933	rs12347076	C	T	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	107457532	rs10761073	C	T	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,293:0.99:295
chr9	107457725	rs12338899	G	A	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	107510145	rs3753024	G	C	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	107510178	rs147856422	AGGGGC	A	3163.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	107515214	rs2274870	G	A	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	107526619	rs62565988	G	A	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	107531361	rs2472478	T	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	107548493	rs2740485	G	T	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	107556793	rs34484490	T	TAAA	575.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.207;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.99;ReadPosRankSum=1.107;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,21:0.88:24
chr9	107562804	rs2230808	T	C	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	107566877	rs2777801	C	A	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	107578401	rs2234885	C	T	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	107579818	rs28652716	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	107581749	rs2254884	A	C	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	107665751	rs2482424	C	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	108060515	rs2036876	G	A	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	108147627	rs2771034	G	A	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	108152199	rs2771040	G	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	108210665	rs3831166	GCT	G	830.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	108223786	rs10991661	A	G	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	108234163	.	G	GTT	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.447;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=-0.312;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr9	108275777	rs10739910	T	C	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	108293042	rs2768278	G	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	108456888	rs2271247	A	C	824.53	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:3,35:0.92:38
chr9	108483741	rs7859253	G	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	109689859	rs3814540	T	C	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	109691676	rs3814538	A	G	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	110047132	rs10733562	G	C	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	110047316	rs10739234	A	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	110080967	rs1805332	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	110081018	rs1805335	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	110086097	rs11573714	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	110086149	rs1805334	G	A	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	110093970	rs3056494	CA	C	2601.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:22,162:0.88:184
chr9	110249505	rs2236599	C	T	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr9	111637331	rs1981268	CC	AG	6043.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	111641627	rs2275496	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	111653574	rs1063110	C	G	4932.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr9	111665719	rs17792422	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr9	111670707	rs838824	T	C	5248.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr9	111678428	rs1772046	T	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	111688767	rs2275635	C	T	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr9	111712910	rs2780334	G	C	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr9	111746607	rs838838	T	C	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	111754288	rs838836	T	C	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	111782531	rs7776	T	G	159.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	111798751	rs2256253	C	T	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	111800234	rs534286	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	111812825	rs614253	C	T	5707.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	111843055	rs497196	A	T	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	111870700	.	TA	T	399.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=2.246;QD=3.51;ReadPosRankSum=-0.050;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:59,55:0.48:114
chr9	111882355	rs10710804	GA	G	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	111899928	rs10759329	A	G	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	111903890	rs11421991	G	GA	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:4,56:0.93:60
chr9	111911775	rs1533641	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	111911823	rs999729	C	G	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	111929420	rs10979723	CG	GC	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	111936732	rs10733569	G	A	1727.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	111936788	rs10979727	C	T	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	111945049	rs3750450	T	G	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	111945166	rs10122682	A	G	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	111956599	rs3750447	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	112020668	rs745388	T	C	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	112020713	rs893917	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	112025473	rs1982226	C	A	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	112041925	rs2014890	A	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	112151349	rs1371787	C	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	112170701	rs35463120	T	TAAAC	3181.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	112172477	rs2275699	T	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	112182649	rs4077728	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	112184972	.	CA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.186;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr9	112199105	rs13284236	T	G	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	112199146	rs4978809	A	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	112211182	rs35966698	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.87;ReadPosRankSum=1.131;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr9	112629397	rs7044189	G	A	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	112629444	.	C	CTGTGTGTGTG	275.73	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr9	112629858	rs2769154	A	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	112778426	rs723706	A	G	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	112778444	rs10116779	A	C	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	112898327	rs1475612	A	G	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	112918531	rs10759392	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	112918581	rs7862044	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	112963504	rs10120707	A	G	8217.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	112963702	rs4978888	G	A	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr9	113006420	rs5843	A	G	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	113006579	.	T	TTATATATATACATATACATATGTATATATATACATATACATATGTATATATATACATATACATATG	1005.75	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.29;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	113007289	rs4135220	T	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	113007319	rs4135219	TGAA	T	2097.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	113091653	rs10980325	A	C	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	113137562	rs138259328	TTCTGAG	T	10727.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	113139489	rs2274485	C	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	113139783	rs2077800	G	A	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	113141815	rs992883	A	G	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	113151713	rs2296779	T	C	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	113166697	rs1410049	T	A	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	113168344	rs7850488	G	C	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	113169126	rs2281937	G	A	7112.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	113169630	rs7046213	TG	CA	12870.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr9	113192387	rs11331398	CT	C	366.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=0.660;QD=10.19;ReadPosRankSum=0.106;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:7,29:0.81:36
chr9	113234651	rs201481904	G	A	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	113259152	rs10817033	T	G	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	113490776	rs10817087	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	113490925	rs12551974	G	A	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	113547322	rs484010	T	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	113637662	rs955888	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	113800790	rs28700160	G	A	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr9	114090279	rs314452	A	G	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr9	114125835	rs2297524	A	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	114134198	rs10980884	C	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	114136169	rs7029123	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	114146686	rs12350482	C	T	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	114148496	rs4978994	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	114155899	rs2598360	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	114170785	rs79202070	TA	T	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-0.480;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:66,42:0.39:108
chr9	114174415	rs2418163	T	C	6806.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	114178402	rs12338500	T	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	114185613	rs41296073	G	A	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	114193095	rs12348365	A	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114202502	rs7860748	G	A	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	114293072	.	TATATATATAC	T	145.80	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	114301585	rs10441737	C	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	114326557	rs138247149	T	TTTA	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.56;ReadPosRankSum=-0.165;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr9	114341239	rs375892629	GA	G	446.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.735;QD=1.92;ReadPosRankSum=3.493;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:162,71:0.30:233
chr9	114409550	rs4978455	A	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	114411945	rs7019332	G	T	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	114424119	rs199499183	C	CG	308.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=30.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	114454544	rs7869279	T	C	1908.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	114454580	rs1475110	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	114456322	rs113054343	T	TTAAG	797.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	114462322	rs6477845	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	114464487	rs1407390	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	114467446	.	T	TACACACACACAC	412.74	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	114467448	rs4993590	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	114467450	rs28406980	T	C	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=54.08;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	114467478	rs28545063	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	114467703	rs60124253	C	CT	85.75	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr9	114469078	rs10125413	T	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	114475262	rs6477846	T	A	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	114480602	rs2418174	C	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	114484682	rs1337581	T	C	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	114489887	rs953536	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	114490308	rs7470491	T	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	114537978	rs440164	A	T	619.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	114543400	rs2786632	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	114659661	rs3780519	A	T	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114687164	rs80084467	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	114811154	rs1980739	C	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	114861016	rs3739697	T	C	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	114919707	rs700105	A	G	4334.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	115142330	rs34308354	C	CGGG	734.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.67;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	115142507	rs7867831	A	G	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	115179316	rs11447018	A	AT	1200.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	115216222	rs10538330	GATTA	G	3678.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	115249262	rs6477940	T	C	1387.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	115249433	rs7031191	T	C	4666.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	115450093	rs786970	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	115567015	rs139599865	A	ATG	1623.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	115567184	rs1891402	T	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	115580008	rs10117709	G	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	115598447	rs6477961	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	115600848	rs7023478	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	115652836	rs3802492	G	A	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	115760561	rs10981590	C	T	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr9	115811835	rs2274761	G	C	4186.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr9	115818949	rs2282076	A	T	6359.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	115913338	rs143966010	C	G	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	115913589	rs112393959	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr9	115918306	rs10121117	G	A	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	115920099	rs4344146	T	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	115924932	rs10513187	C	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	115928275	rs3810908	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	115928566	rs16910202	A	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	115931703	rs3810910	G	A	6395.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	115932299	rs7865125	T	A	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	115934022	rs5900041	A	AACCTGGATT	1481.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	115941144	rs10118914	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	115946500	rs10817454	A	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	115946892	rs10118429	T	A	8585.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	115950706	rs10435864	A	C	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	115952895	rs12684417	T	C	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	115959199	rs7866432	G	C	7754.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr9	115961059	rs7874583	G	A	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	115961394	rs4407968	C	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	115962377	rs55660432	G	A	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	115965015	rs7034425	G	A	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	115965339	rs10568341	GAA	G	2285.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	115968609	rs4281172	C	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	115968678	rs1133620	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	115968711	rs1133619	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	115968797	rs1133618	C	T	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	115968932	rs142259071	ACAGAAGTGGGAACAACAGTCATTCAGCCTCTAGG	A	1322.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	115968991	rs150300022	AATTTTTTT	A	577.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;QD=36.11;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr9	115969423	rs4548256	C	T	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	115969433	rs5900043	T	TAGA	2184.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	115969448	rs41280217	C	T	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	115985607	rs5900047	TA	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.754;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.071;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr9	116022860	rs57266996	T	TACAC	385.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.000;QD=32.15;ReadPosRankSum=1.610;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr9	116029574	rs137925599	C	T	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=32.24;SOR=8.121;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	116044905	rs199502579	C	CTT	373.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.490;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.36;ReadPosRankSum=1.203;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr9	116044998	rs11552582	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=25.30;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	116045311	rs77287785	GA	G	1560.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	116048755	rs4979231	G	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	116048874	rs4979232	A	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	116048977	rs10981714	T	C	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	116054040	rs2418249	C	T	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	116059733	rs3750535	A	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr9	116060124	rs3750534	T	C	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	116060487	rs3750532	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr9	116085423	rs10817479	G	A	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr9	116091203	rs35305327	A	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	116124523	rs7041125	C	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	116130510	rs113186853	ATC	A	6548.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	116131869	rs10115141	G	A	4936.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	116136198	rs1043836	C	T	10632.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr9	116153352	rs2761016	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	116153900	rs1139488	A	G	6154.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr9	116248057	rs140426593	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	116356373	rs12350531	G	C	13956.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr9	116356516	rs12341266	A	G	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr9	116356529	rs10817493	C	G	10819.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	116359339	rs1051013	T	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	116638556	.	AGCG	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.4997;HP=4;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=1;PP=22;QD=28.0;SC=CGGAGGAGGGAGCGGCGGCGG;SbPval=0.29;Source=Platypus;TC=7;TCF=5;TCR=2;TR=1;WE=116638566;WS=116638546;set=Platypus	GT:AD:AF:DP	1/0:6,1:0.14:7
chr9	116764832	rs148995274	TTTTGCAC	T	14405.73	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr9	116769515	rs4979321	C	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	116778269	rs4979324	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	116791161	rs7030167	T	C	12531.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr9	116856481	rs35719524	C	A	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	116856889	rs1465660	A	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	116858625	rs6478062	T	G	6746.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr9	116859769	rs3810929	T	C	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr9	116859852	rs62556540	C	T	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	116860516	rs57239538	TG	T	2159.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	116860731	.	A	AGCGGGGCACTCTGGAGGAGG	1016.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.31;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	116930100	rs2567707	G	A	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	116930194	rs2567706	A	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr9	116931099	rs2241671	G	A	22406.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,825:1.00:825
chr9	116931445	rs2808770	T	C	15079.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr9	116931666	rs2567705	A	T	8187.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr9	116931737	rs2808771	C	T	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	116940418	rs13295426	A	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.20;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	116940489	rs13295729	C	T	3451.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	116940594	rs3810930	A	G	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	116945454	rs10759688	A	C	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	116958144	rs10982097	C	T	2759.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	116958216	rs2567711	C	T	5250.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	116967263	rs2567719	T	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	116967952	rs2567720	T	C	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	116968512	rs41312204	C	T	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr9	116971622	rs2060133	G	C	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	116973273	rs34350265	C	T	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr9	116973361	rs10982109	C	T	6614.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	116980089	rs16927409	T	C	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	116997994	rs2015408	T	C	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	117026581	rs4978576	C	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	117033096	rs2636866	C	T	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr9	117064345	rs1546048	G	A	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	117064405	rs10817586	C	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	117072656	rs1000744	C	A	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	117073006	rs1249756	C	T	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	117121840	rs2787348	A	C	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	117122202	rs3748177	C	T	8592.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	117124519	rs2636901	A	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	117124731	rs3748176	G	A	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr9	117127034	rs2787351	C	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr9	117138278	rs4979371	C	T	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:5,168:0.97:173
chr9	117166338	rs6478078	G	C	9201.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr9	117170310	rs2274160	C	T	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	117188566	rs10817610	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr9	117266337	rs35122928	TA	T	970.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.501;QD=11.84;ReadPosRankSum=0.604;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:12,70:0.85:82
chr9	117266965	rs2297815	C	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr9	117390300	rs7031094	C	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	117428960	rs1055207	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	117430524	rs2296947	G	A	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	117430611	rs1359992	A	T	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	117430743	rs2418316	A	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr9	117433685	rs2296948	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	117433811	rs3215861	C	CA	3729.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	117554504	.	T	TAC	342.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=21.42;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr9	117782836	rs34490502	T	TA	116.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	117783551	rs5900112	TA	T	267.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr9	117791512	rs142249284	G	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	117791617	rs12346540	T	C	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr9	117792426	rs13286441	G	T	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	117792583	rs13321	C	G	5664.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	117797359	rs3215885	A	AT	92.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	117797597	rs12347433	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	117800417	rs2274751	T	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	117803185	rs35141770	A	AAC,AACAC	2676.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=74;set=Intersection	GT:AF:DP	1/2:0.16,0.83:69
chr9	117808785	rs2104772	T	A	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	117819389	rs12348090	A	T	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr9	117819748	rs139652669	GTTAA	G	1663.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	117836188	rs2210108	A	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	117838624	rs2274835	C	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	117840061	rs2988577	A	G	47.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr9	117846450	rs1755639	A	G	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	117848201	rs3827815	T	C	9996.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr9	117848394	rs1757095	T	C	12409.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr9	118054182	rs2285316	G	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	118163563	rs2269700	C	T	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	118989926	rs13290387	G	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	119106881	rs7020782	C	A	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr9	119158814	rs8456	T	C	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	119160748	rs8653	T	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	119160758	rs146823201	T	TA	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.09;ReadPosRankSum=1.998;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:15,25:0.62:40
chr9	119160880	rs191712626	A	C	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	119199485	rs7034542	T	A	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	119199820	rs7018569	C	G	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	119495697	rs7863560	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	119582838	rs79766301	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	119582872	rs3765537	T	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	119738890	rs2274762	T	G	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	119770551	rs7036098	G	A	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	119903807	rs57782747	A	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	119903827	rs13291457	A	G	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	119977077	rs4543613	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	120053776	rs7848630	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	120466929	rs5900307	CA	C	1098.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr9	120471058	rs2770148	G	A	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr9	122257627	rs10984560	C	T	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	123151679	rs4836820	A	G	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	123152099	rs2297457	C	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	123152241	rs2297456	A	C	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	123156761	rs4410972	G	C	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	123170733	rs4837768	C	G	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	123280950	rs2095064	T	C	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	123291036	rs4836822	C	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	123313246	rs954214	T	C	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	123330813	rs4837782	T	C	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	123342259	rs932975	C	A	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	123342275	rs932974	A	G	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	123370345	rs991121	C	G	1459.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	123374639	rs2416760	T	C	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	123476542	rs369989873	ACGGCGG	A	8121.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	123586581	rs35903891	CA	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=0.067;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr9	123631673	rs199814427	GCTGT	G	10818.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr9	123762336	.	C	CA	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.52;ReadPosRankSum=0.144;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr9	123787697	.	T	TACAC	700.74	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr9	123886277	rs62578445	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	124116695	rs167394	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	124218133	rs3747845	C	T	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	124222267	rs2289068	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	124223702	rs1023731	C	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr9	124225598	rs77378583	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	124229981	rs10818542	A	G	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr9	124241284	rs112301437	T	C	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	124241314	rs871671	A	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	124241369	rs871670	T	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	124241603	rs871672	G	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	124519214	rs55835505	A	G	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	124736218	rs35609526	C	T	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr9	124854880	rs10818624	C	T	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr9	124855211	rs61742319	C	T	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:111,116:0.51:227
chr9	124855330	rs201653732	G	GTGGCCT	3764.73	.	AC=1;AF=0.500;AN=2;DB;DP=255;MQ=60.47;set=Intersection	GT:AD:AF:DP	0/1:136,100:0.42:236
chr9	124895467	rs12380610	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr9	124895500	rs10985546	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	124906723	rs3818638	T	C	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	124910582	rs3793616	C	A	9073.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr9	124914613	rs4679	C	T	10109.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr9	124929006	rs2274747	G	C	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,29:0.44:66
chr9	124929211	rs1411444	A	G	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr9	124932167	rs138480941	A	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,33:0.58:57
chr9	124972042	rs989798	C	T	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr9	124976152	rs2274748	G	C	8520.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr9	124976475	rs62574050	C	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	124990765	rs71371929	A	AC	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.927;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=7.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.779;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr9	124990773	rs113188211	C	CG	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=11.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.915;SOR=0.062;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr9	125133479	rs1236913	T	C	14808.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr9	125134156	rs77329588	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr9	125144145	rs1238420	A	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr9	125239253	rs1962091	T	C	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:53,71:0.57:124
chr9	125282393	rs1318392	C	T	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	125289033	rs41277122	A	G	5496.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:348,275:0.44:623
chr9	125289083	rs16911867	A	G	20778.77	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:1,762:1.00:763
chr9	125289521	rs10818708	G	A	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	125315376	rs11412445	C	CT	3061.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=2.033;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr9	125315418	rs1411270	G	C	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	125315542	rs1831369	C	T	13425.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:1,490:1.00:491
chr9	125315557	rs1831370	T	C	13071.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:1,493:1.00:494
chr9	125315778	rs1411271	G	C	18086.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,675:1.00:675
chr9	125316033	rs1341042	T	C	16975.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr9	125316042	rs1341043	T	C	17326.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr9	125316179	rs1341044	T	G	9734.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:1,346:1.00:347
chr9	125316350	rs1411272	C	T	12523.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr9	125316455	rs7039436	C	T	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	125317424	rs10733658	G	T	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr9	125317485	rs10760239	G	T	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	125330125	rs10739614	C	G	8189.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr9	125330184	rs10985702	A	C	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	125330325	rs10985703	C	G	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	125330678	rs10985704	T	G	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	125330739	rs1999182	G	A	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	125377087	rs972925	A	G	13223.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr9	125377505	rs1329957	A	G	12942.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr9	125378014	rs7470572	T	G	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:84,105:0.56:189
chr9	125390874	rs1556189	A	C	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	125391026	rs1476858	A	C	8192.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr9	125391127	rs1476859	C	T	5405.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:220,264:0.55:484
chr9	125391241	rs1476860	G	A	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:132,155:0.54:287
chr9	125391369	rs1536929	A	G	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	125391409	rs1536928	A	G	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:139,115:0.45:254
chr9	125391677	rs12347681	T	C	1725.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:83,88:0.51:171
chr9	125391770	rs11421222	C	CA	844.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:85,52:0.38:137
chr9	125391917	rs1329951	A	G	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	125391940	rs7037571	C	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr9	125438390	.	GGT	G	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.634;QD=3.65;ReadPosRankSum=-1.740;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr9	125486968	rs2215530	G	A	12196.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:2,431:1.00:433
chr9	125512193	rs10760252	C	A	22394.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	1/1:4,847:1.00:851
chr9	125512575	rs4838012	G	A	24740.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,938:1.00:938
chr9	125512770	rs10985760	T	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	125512788	rs10818740	G	A	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.43;QD=46.42;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	125512795	rs10818741	G	C	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.88;QD=41.24;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	125512826	rs28670025	G	A	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	125617395	rs5900548	TA	T	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.816;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.329;QD=3.90;ReadPosRankSum=-0.751;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:58,50:0.46:108
chr9	125620105	rs5900549	C	CA	1093.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	125637471	rs2596699	A	T	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	125637648	rs2596698	T	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr9	125659520	rs2793005	T	C	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr9	125673051	rs1147321	T	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr9	125747038	rs614274	G	T	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:4,153:0.97:157
chr9	125759861	rs138316961	TTTTC	T	2717.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=43.14;SOR=1.685;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	125760863	rs587364	T	C	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr9	125761051	rs605546	G	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	125797918	rs369720245	CGTGTGTGTGTGTGT	C,CGT	1597.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=89;set=Intersection	GT:AF:DP	1/2:0.18,0.80:44
chr9	125832879	rs803733	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	125861695	rs700080	T	C	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	125861888	rs700081	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	125884719	rs66492320	TA	T	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.088;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr9	125898643	rs72753292	T	C	7774.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr9	125920376	rs803736	G	A	6986.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	125922854	rs11437080	C	CA	1027.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	125932152	.	C	CATAT	1444.73	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:63,49:0.44:112
chr9	126028395	rs7863265	C	G	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	126118517	rs72433015	AGCAGAGC	A	7887.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr9	126125318	rs2808415	C	A	14117.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:1,522:1.00:523
chr9	126125364	.	C	T	5470.77	.	AC=1;AF=0.500;AN=2;DP=488;set=Intersection	GT:AD:AF:DP	0/1:228,260:0.53:488
chr9	126128211	rs1105223	T	C	2541.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:153,131:0.46:284
chr9	126128253	rs1105222	G	C	2608.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:119,123:0.51:242
chr9	126128679	rs11790447	G	C	1803.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:54,85:0.61:139
chr9	126129351	rs10760281	G	A	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:89,97:0.52:186
chr9	126129904	rs10818812	C	T	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.15;ReadPosRankSum=0.824;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:78,92:0.54:170
chr9	126131110	rs2488603	T	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	126131161	rs10760282	G	A	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.104;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:38,66:0.63:104
chr9	126133547	rs2488602	T	C	13513.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr9	126134542	rs61740213	G	A	8698.77	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:307,412:0.57:719
chr9	126135300	.	C	T	673.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr9	126135715	rs2488601	A	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr9	126136139	rs73571431	C	T	5237.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:309,262:0.46:571
chr9	126139065	rs10760283	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr9	126143662	rs3739837	G	A	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:67,101:0.60:168
chr9	126144746	rs2491348	T	C	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	126144758	rs2808409	T	C	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	126145002	rs4836919	G	T	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chr9	126145907	rs2797946	C	A	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr9	126146197	rs2808411	C	G	10177.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	126202551	rs10739633	A	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	126217128	.	C	CT	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.044;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr9	126220283	rs71390436	C	CT	594.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.568;MLEAC=2;MLEAF=1.000;MQ=60.41;MQRankSum=0.599;QD=12.39;ReadPosRankSum=1.264;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:9,39:0.81:48
chr9	126414201	rs189590905	T	C	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.619;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.408;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=-0.853;QD=9.21;ReadPosRankSum=0.746;SOR=0.341;set=HC	GT:AD:AF:DP	0/1:55,42:0.43:97
chr9	126554884	rs146310416	C	T	2821.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:124,135:0.52:259
chr9	126770250	rs10818907	C	G	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:229,129:0.36:358
chr9	126783433	rs1042486	G	C	10403.77	.	AC=1;AF=0.500;AN=2;DB;DP=1152;set=Intersection	GT:AD:AF:DP	0/1:624,526:0.46:1150
chr9	126794648	rs28649641	G	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,72:0.46:158
chr9	127032607	rs1045774	A	G	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:114,93:0.45:207
chr9	127075021	rs2274780	T	C	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	127083725	rs10760352	C	T	12662.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr9	127083933	rs2274781	A	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr9	127088481	rs71903158	TCC	T	935.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.547;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.74;ReadPosRankSum=0.425;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:5,30:0.86:35
chr9	127088728	rs151018846	CCCGCCAGGAG	C	6677.73	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:132,181:0.58:313
chr9	127089775	rs748741	A	G	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:169,146:0.46:315
chr9	127101924	rs10760354	C	T	20327.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,768:1.00:768
chr9	127116102	rs10818946	T	G	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	127177161	rs4574	A	G	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	127215167	rs59108500	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr9	127215344	rs7861556	A	G	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,91:0.54:169
chr9	127215772	rs72616654	C	G	5140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.370;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=-0.481;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:150,133:0.47:283
chr9	127215778	rs67997410	C	T	5248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.765;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=-1.458;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:150,141:0.48:291
chr9	127220952	rs12347840	T	C	18097.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr9	127228596	rs4838184	A	G	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	127228824	rs4838185	T	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	127230118	rs10818977	C	T	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	127230891	rs10760365	G	A	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr9	127231774	rs1570580	C	G	15287.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr9	127244955	rs915034	G	A	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	127255448	rs2297605	G	A	9260.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:2,357:0.99:359
chr9	127287158	rs200630959	G	GA	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.946;QD=0.89;ReadPosRankSum=0.704;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:162,38:0.19:200
chr9	127495508	rs10760374	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	127557152	rs7856071	G	T	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr9	127561559	rs2281923	C	T	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	127563364	rs913231	G	A	8468.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr9	127566378	rs7874348	A	G	11211.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:2,427:1.00:429
chr9	127572710	rs7020260	C	G	10388.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr9	127618776	rs2274970	A	G	8808.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr9	127618839	rs10760381	C	G	11390.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr9	127619553	rs10819000	C	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	127619625	rs35041146	G	GC	5607.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	127619922	rs944952	T	C	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr9	127620480	rs10593927	CAT	C	2278.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	127637215	rs581558	T	G	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	127644882	rs596231	G	A	16939.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr9	127661521	rs750884	T	C	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.51;SOR=1.848;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	127661526	rs750883	A	C	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=1.870;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	127674200	rs583134	A	C	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr9	127733926	rs2289631	C	T	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	127757310	rs6478690	C	T	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr9	127765978	rs4837005	T	C	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr9	127781259	rs1017530	G	A	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:63,40:0.39:103
chr9	127951072	.	CAAT	C	62	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=7;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=62;QD=35.0;SC=CAGTTAAAAACAATAATAATA;SbPval=0.74;Source=Platypus;TC=12;TCF=6;TCR=6;TR=2;WE=127951082;WS=127951062;set=Platypus	GT:AD:AF:DP	0/1:10,2:0.17:12
chr9	127975583	rs359588	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	127982775	rs35811664	CT	C	28701.73	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,744:1.00:744
chr9	128064242	.	CT	C	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.957;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.915;QD=3.76;ReadPosRankSum=-1.449;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:46,38:0.45:84
chr9	128070227	rs1333055	G	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr9	128072273	rs568409	G	C	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:110,158:0.59:268
chr9	128074807	rs432757	T	C	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,316:1.00:316
chr9	128097667	rs13288223	A	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr9	128116817	rs937482	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr9	128121592	rs2270746	A	G	1436.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr9	128124798	rs13291306	A	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr9	128201098	rs7864593	A	G	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	128206717	rs907501	C	G	5341.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	128327891	rs545320	A	C	7127.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	128328020	.	CAAAA	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=-0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.23;ReadPosRankSum=-0.381;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr9	128711809	rs13298715	A	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr9	128724304	rs888230	A	C	1781.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr9	129089235	rs76544515	G	A	516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.676;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.132;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:33,26:0.44:59
chr9	129097817	rs1230752	G	A	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	129183952	rs147012800	TC	T	1150.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr9	129184091	rs2286888	T	C	13962.77	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:2,527:1.00:529
chr9	129246177	rs2286886	T	C	8882.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr9	129453229	rs2277158	A	G	12477.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr9	129455372	rs34682917	C	T	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr9	129455587	rs13295990	G	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	129458092	rs3737048	G	T	4466.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:123,196:0.61:319
chr9	129595895	rs3118994	T	C	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:177,151:0.46:328
chr9	129728336	rs480796	G	A	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	129740101	rs10819259	G	T	9015.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr9	129831455	rs3832609	AC	A	3794.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	129831659	rs1281158	T	A	9551.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr9	129854199	rs2297866	G	A	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr9	129871080	.	G	A	340.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr9	129928600	rs946430	A	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr9	129930892	rs2297865	A	G	5490.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	129940379	rs3739556	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	130075672	rs2779714	C	T	1983.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:68,88:0.56:156
chr9	130080231	rs56067901	G	A	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr9	130082872	rs3739558	A	C	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:62,47:0.43:109
chr9	130083140	rs3739557	T	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr9	130087508	rs62578844	C	T	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:123,123:0.50:246
chr9	130116826	rs4837144	G	A	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr9	130127691	rs34477788	C	CT	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.299;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:145,30:0.17:175
chr9	130164818	rs3802367	T	C	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chr9	130164993	rs1138739	C	T	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:62,90:0.59:152
chr9	130165995	rs1138740	C	T	7434.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:275,362:0.57:637
chr9	130166382	rs10819287	C	G	10880.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.39;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	130166382	.	CG	GG,GT	1790	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=6;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=135,81;NR=121,71;PP=1378,1790;QD=5.51863754901;SC=CCCCGCCATGCGGGGGAGGGC;SbPval=0.52;Source=Platypus;TC=259;TCF=137;TCR=122;TR=256,152;WE=130166391;WS=130166372;set=Platypus	GT:AF:DP	0/1:0.99:259
chr9	130166383	rs11788710	G	T	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.07;ReadPosRankSum=2.206;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:122,171:0.58:293
chr9	130191186	rs13292096	C	T	1689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=1.554;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:49,82:0.63:131
chr9	130197225	rs3923308	G	A	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:33,40:0.55:73
chr9	130197414	rs4504745	A	G	4311.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:157,205:0.57:362
chr9	130198100	rs7853047	A	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:34,46:0.57:80
chr9	130198342	rs4500179	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:77,63:0.45:140
chr9	130206295	rs142661397	AT	A	1250.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:86,81:0.49:167
chr9	130206762	rs2248025	C	T	12492.77	.	AC=1;AF=0.500;AN=2;DB;DP=1078;set=Intersection	GT:AD:AF:DP	0/1:487,586:0.55:1073
chr9	130210111	rs1139400	T	C	10487.77	.	AC=1;AF=0.500;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	0/1:407,518:0.56:925
chr9	130210946	rs2247573	A	G	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:28,40:0.59:68
chr9	130212876	rs2247322	T	A	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:162,120:0.43:282
chr9	130213508	rs2244624	A	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr9	130216951	rs2244218	G	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=1.585;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr9	130219669	rs2243906	C	T	10181.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:441,493:0.53:934
chr9	130219743	rs2243903	T	C	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:150,151:0.50:301
chr9	130221388	rs2243767	T	C	5652.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:173,259:0.60:432
chr9	130224729	rs144681769	T	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:105,49:0.32:154
chr9	130236243	rs2250267	G	A	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:136,153:0.53:289
chr9	130241374	rs56957982	G	GCA	2877.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr9	130241822	rs1539569	T	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr9	130242109	rs1539568	C	T	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:88,102:0.54:190
chr9	130242166	rs1539567	A	G	4957.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:181,240:0.57:421
chr9	130251512	rs2245677	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr9	130253286	rs5900748	G	GA	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:29,32:0.52:61
chr9	130258160	rs2249052	A	T	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr9	130259618	rs2248822	A	C	3539.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:148,168:0.53:316
chr9	130269786	rs2245051	A	G	5376.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	130286150	rs2251409	A	G	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:65,96:0.60:161
chr9	130287287	rs3765602	C	A	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:128,102:0.44:230
chr9	130289615	rs2243558	C	G	3829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=7.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.52;ReadPosRankSum=-3.406;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:177,187:0.51:364
chr9	130331257	rs151147273	CCCGCTCCCG	C	2229.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	130341095	rs4240419	C	T	3281.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	130341253	rs4240420	A	G	7712.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	130413851	rs368668044	CCT	C	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.844;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=0.646;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:201,25:0.11:226
chr9	130423271	rs372510099	CA	C	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.919;QD=2.23;ReadPosRankSum=-0.657;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:128,56:0.30:184
chr9	130446493	rs4836575	A	G	1050.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	130457332	rs138071672	T	TTGA	3658.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=1.943;QD=21.40;ReadPosRankSum=0.102;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:17,154:0.90:171
chr9	130473674	.	A	G	3759.77	.	AC=1;AF=0.500;AN=2;DP=399;set=Intersection	GT:AD:AF:DP	0/1:210,188:0.47:398
chr9	130475011	rs522328	T	C	17857.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr9	130475442	rs497632	A	C	15483.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr9	130477160	rs550045	G	A	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	130477768	rs504434	G	A	21902.77	.	AC=2;AF=1.00;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr9	130485618	rs537881	G	A	19199.77	.	AC=2;AF=1.00;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr9	130486384	rs836333	C	T	1419.88	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:7,55:0.89:62
chr9	130486385	rs35761147	G	GC	2587.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr9	130486641	rs202122084	G	T	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=7.003;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.054;QD=9.22;ReadPosRankSum=0.899;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:88,81:0.48:169
chr9	130486915	rs2256139	T	C	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	130488494	rs538927	C	T	8284.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr9	130489189	rs578997	C	T	11705.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr9	130489558	rs472144	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr9	130489743	rs13298768	A	G	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	130491726	rs555022	T	C	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	130491998	rs557630	A	G	2890.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr9	130492039	rs557749	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr9	130493513	rs482095	A	G	10884.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr9	130493724	rs505268	C	T	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr9	130494486	rs114990094	G	A	1807.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:122,92:0.43:214
chr9	130494667	rs534652	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr9	130494811	rs515182	T	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	130494957	rs538066	T	C	17613.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr9	130495633	rs564754	C	G	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr9	130495890	rs3739812	A	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr9	130496415	rs482712	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	130497293	rs7867296	G	T	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr9	130497591	rs7848592	C	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr9	130502238	rs7852090	T	C	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr9	130504070	rs514024	G	A	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:167,196:0.54:363
chr9	130509439	rs2233505	A	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:132,78:0.37:210
chr9	130512071	rs2233500	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.565;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.315;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr9	130523919	.	C	G	1832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.029;ClippingRankSum=0.000;DP=401;ExcessHet=3.0103;FS=3.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.528;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:282,118:0.29:400
chr9	130524817	rs3962613	C	T	13630.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr9	130536717	rs10760500	G	A	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:189,135:0.42:324
chr9	130565267	rs10760502	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	130565369	rs138322374	G	A	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr9	130571225	.	AT	A	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.242;QD=4.00;ReadPosRankSum=0.301;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:35,35:0.50:70
chr9	130587052	rs148063362	A	AGGGAGG	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.382;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=17.103;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=3.198;QD=6.67;ReadPosRankSum=-0.828;SOR=3.412;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr9	130630233	rs4226	G	T	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	130630639	rs913986	A	G	6184.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	130635540	rs2767398	A	G	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr9	130648680	rs913983	G	A	14425.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr9	130649111	rs4837202	G	A	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	130657020	rs5900777	GC	G	3654.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	130670652	rs1043012	A	G	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	130670903	rs10760511	C	A	6542.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	130672106	rs7026378	A	G	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	130672221	rs10739700	C	T	25772.77	.	AC=2;AF=1.00;AN=2;DB;DP=969;set=Intersection	GT:AD:AF:DP	1/1:0,968:1.00:968
chr9	130690412	rs10760515	G	C	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr9	130698029	rs7997	G	C	9174.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr9	130698043	rs6781	A	G	9899.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr9	130699917	rs2274424	G	A	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	130700251	rs6478802	T	C	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	130707081	rs2274426	A	G	17089.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr9	130710726	rs4837212	A	G	12126.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr9	130710791	rs4837213	T	C	3873.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	130715922	rs2417062	A	G	20191.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,766:1.00:766
chr9	130829039	rs1539350	A	G	12219.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr9	130854127	rs10739712	A	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	130860866	rs947624	T	C	10773.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr9	130861039	rs947623	A	G	8159.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	130864676	rs7859709	T	C	16855.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr9	130868312	rs7864867	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	130868831	rs1418420	T	C	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	130869499	rs4837239	A	T	14412.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr9	130883511	rs2040004	C	T	13294.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr9	130884753	rs13283456	C	T	10833.77	.	AC=1;AF=0.500;AN=2;DB;DP=1237;set=Intersection	GT:AD:AF:DP	0/1:678,555:0.45:1233
chr9	130886906	rs4837241	A	G	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	130889571	rs4837242	A	G	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	130889600	rs4837243	C	T	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr9	130889705	rs4837244	G	A	12216.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr9	130890449	rs11283643	A	AGGTGCGCGGC	26624.73	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr9	130913608	rs12006030	G	C	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:27,32:0.54:59
chr9	130914170	rs11794980	C	G	1889.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:83,91:0.52:174
chr9	130914434	rs2232629	A	G	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr9	130922952	rs1539351	G	C	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	130931586	rs10987905	C	A	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	130941741	rs11788797	C	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	130950328	rs34003070	C	CA	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.077;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	130950396	rs34796767	C	CA	153.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.08;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	131001846	rs34036148	CGT	C	629.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=8.041;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.863;QD=4.81;ReadPosRankSum=0.056;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:82,49:0.37:131
chr9	131013149	.	T	C	663.77	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:116,40:0.26:156
chr9	131085373	rs3003601	G	C	18237.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr9	131193665	rs1009850	A	C	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:1,230:1.00:231
chr9	131218213	rs10819384	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	131222541	rs6478832	A	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr9	131222955	rs377731198	T	C	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:247,204:0.45:451
chr9	131235321	rs4512487	A	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	131245175	.	CTT	C,CT	2987.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DP=481;ExcessHet=3.0103;FS=0.647;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=1.001;QD=10.34;ReadPosRankSum=1.083;SOR=0.613;set=HC	GT:AD:AF:DP	1/2:51,98,140:0.34,0.48:289
chr9	131250084	rs372216616	AC	A	6954.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=42.41;ReadPosRankSum=0.667;SOR=1.468;set=HC	GT:AD:AF:DP	1/1:2,162:0.99:164
chr9	131250086	.	ACAC	A,AAC	6325.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=1.467;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=2.109;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=39.05;ReadPosRankSum=0.622;SOR=1.475;set=HC	GT:AD:AF:DP	1/2:4,25,133:0.15,0.82:162
chr9	131255236	rs62584804	C	T	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:161,132:0.45:293
chr9	131261380	.	G	C	4555.77	.	AC=1;AF=0.500;AN=2;DP=387;set=Intersection	GT:AD:AF:DP	0/1:170,215:0.56:385
chr9	131284914	rs60154464	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.11;ReadPosRankSum=0.976;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr9	131287352	rs10988014	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr9	131295706	rs5900802	CAA	C	161.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.08;ReadPosRankSum=-0.000;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr9	131300143	rs7048583	G	A	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	131303630	rs10513496	C	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,30:0.45:67
chr9	131331320	rs2152833	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	131337389	rs2297768	C	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr9	131337661	rs2297769	A	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	131340306	rs4837280	A	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	131340639	rs1890103	T	C	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	131344607	rs5900808	GA	G	667.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr9	131346218	rs10760566	A	C	9916.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr9	131346479	rs4240431	A	G	10240.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr9	131347165	rs4836615	G	A	6512.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.42;SOR=1.790;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	131347169	rs4837284	C	T	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	131350112	rs4837286	A	G	1914.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	131360750	rs2227864	C	T	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	131374165	rs7024498	C	G	8349.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	131375701	rs1415568	A	G	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	131379967	rs2227862	C	T	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	131380149	rs3750332	C	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	131380994	rs4837290	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	131388643	rs3737308	C	T	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	131389060	rs10694437	C	CAA	4245.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	131392522	rs41308912	C	T	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.81;ReadPosRankSum=0.414;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:88,91:0.51:179
chr9	131392553	rs7866175	G	A	3786.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr9	131397479	rs4837291	G	A	13818.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr9	131398343	rs947182	T	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	131398636	rs10760570	C	T	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	131403096	rs2298045	A	G	16239.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr9	131418828	rs4837292	A	C	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	131452121	.	C	CG	1852.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	131452126	.	GCC	G	2182.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.45;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	131452137	.	C	CG	2405.73	.	AC=2;AF=1.00;AN=2;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	131453331	rs4837293	G	A	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	131455760	rs10739728	C	T	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	131455903	rs4836618	C	T	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr9	131456385	rs10637043	G	GTA	2315.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:25,74:0.75:99
chr9	131465167	rs1572915	A	G	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	131465284	rs3750321	G	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	131468251	rs1572916	T	C	11214.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr9	131475951	rs4837297	T	C	7452.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr9	131477544	rs7854055	G	A	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	131479023	rs10739729	T	C	12246.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr9	131482467	rs3750325	T	C	9513.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr9	131483749	rs2900268	T	A	5952.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	131484410	rs41275916	A	G	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:213,153:0.42:366
chr9	131497832	rs3750329	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	131502112	rs2298044	A	G	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	131502440	rs3818931	G	C	8235.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	131502460	rs7027146	G	T	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	131505092	rs10739731	A	C	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	131513370	rs13284665	A	G	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	131550722	rs1891076	C	G	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	131553768	rs10760577	A	G	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	131565554	rs1572912	T	C	9980.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	131566503	.	AGCT	A	51	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=51;QD=33.0;SC=GGTCAGAAGTAGCTGCTGCTG;SbPval=1.0;Source=Platypus;TC=14;TCF=0;TCR=14;TR=2;WE=131566513;WS=131566493;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chr9	131570183	rs7862546	C	G	10624.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr9	131570274	rs3750323	C	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr9	131585205	rs2997919	T	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	131585994	rs2997918	T	C	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	131586374	rs7033070	G	A	7999.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr9	131588652	rs2997914	T	C	12387.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr9	131588813	rs6478853	C	G	18315.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,698:1.00:698
chr9	131588888	rs6478854	G	C	12225.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr9	131589234	rs2977991	C	G	9273.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr9	131591894	rs112086410	G	C	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	131592193	rs2997906	T	C	16585.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr9	131602897	.	AT	A	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.639;SOR=0.451;set=HC	GT:AD:AF:DP	0/1:111,31:0.22:142
chr9	131608879	rs57333664	CAA	C	416.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.269;MLEAC=2;MLEAF=1.000;MQ=60.35;MQRankSum=0.546;QD=16.67;ReadPosRankSum=0.393;SOR=0.365;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr9	131609015	rs138304702	C	T	4515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.293;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.117;QD=10.75;ReadPosRankSum=-1.299;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:186,234:0.56:420
chr9	131670457	rs3750320	T	C	30078.77	.	AC=2;AF=1.00;AN=2;DB;DP=1095;set=Intersection	GT:AD:AF:DP	1/1:0,1092:1.00:1092
chr9	131671561	rs35266233	C	G	6669.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:380,319:0.46:699
chr9	131689361	rs751340	G	A	4826.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:214,226:0.51:440
chr9	131699847	rs12686860	G	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=-0.826;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr9	131700209	rs10113912	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr9	131702566	rs17455252	G	T	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr9	131702891	rs2273866	A	G	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:165,126:0.43:291
chr9	131709397	rs148171062	C	T	5869.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:321,286:0.47:607
chr9	131715001	rs371313511	CA	C	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=7.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=2.389;SOR=1.365;set=HC	GT:AD:AF:DP	0/1:154,54:0.26:208
chr9	131726482	.	GTGTC	G	703.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr9	131726643	.	CTT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-0.113;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr9	131735559	rs17452428	T	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:64,54:0.46:118
chr9	131745548	rs719703	T	C	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:235,207:0.47:442
chr9	131761437	rs2004632	A	G	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,61:0.39:157
chr9	131761659	rs2302813	A	G	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:64,55:0.46:119
chr9	131761899	rs2302811	A	G	4719.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:235,230:0.49:465
chr9	131764969	rs12683155	A	G	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr9	131765987	rs10739740	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr9	131767668	rs2287363	A	C	4576.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:303,212:0.41:515
chr9	131771505	rs1129098	C	T	2486.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:124,122:0.50:246
chr9	131772389	rs3750340	T	G	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:171,141:0.45:312
chr9	131772870	.	T	A	6605.77	.	AC=1;AF=0.500;AN=2;DP=584;set=Intersection	GT:AD:AF:DP	0/1:265,314:0.54:579
chr9	131790531	rs11537529	C	T	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	131846774	rs10988199	G	A	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	131846838	.	C	T	3524.77	.	AC=1;AF=0.500;AN=2;DP=256;set=Intersection	GT:AD:AF:DP	0/1:98,158:0.62:256
chr9	131846957	rs11541836	T	C	13682.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr9	131848382	rs7859344	T	A	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	131860901	rs3118635	G	T	10004.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr9	131862073	rs3118638	G	A	7035.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	131862730	rs10819462	C	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	131862781	rs10988204	G	A	6740.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	131863079	rs7866897	T	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr9	131864408	rs147223298	C	T	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr9	131871144	rs2768629	A	G	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	131871249	rs2541163	A	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	131871435	rs2541162	A	C	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	131873222	rs3814492	G	A	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	131873638	rs3124501	T	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	131881492	rs10819466	G	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	131882703	.	C	CA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.844;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr9	131882705	rs200158794	AG	A	69.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.373;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr9	131882706	rs3124504	G	A	573.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.04;ReadPosRankSum=0.335;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr9	131882761	rs9409311	T	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	131882961	rs3739843	G	A	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	131891152	rs7023900	C	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	131897221	rs7019373	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr9	131898880	rs1536548	A	G	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr9	131899846	rs3118631	T	C	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr9	131900180	rs2297112	G	A	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	131904617	rs57365080	T	TTG	1950.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:20,65:0.76:85
chr9	131905814	rs913272	T	C	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr9	131940019	rs184457	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.311;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:64,27:0.30:91
chr9	132084885	rs913771	A	G	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr9	132374678	rs3087721	T	C	2506.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:205,125:0.38:330
chr9	132381749	rs4240434	G	A	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	132382253	rs7467760	C	T	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr9	132396281	rs10819551	G	C	5931.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr9	132396655	rs1558873	A	G	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	132400480	rs3739851	G	A	19779.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr9	132401824	rs2302780	G	A	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr9	132402908	rs2241247	C	G	7326.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	132404304	rs4837396	C	G	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	132515081	rs2241271	T	C	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:85,123:0.59:208
chr9	132566666	rs7029757	G	A	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:64,111:0.63:175
chr9	132569442	rs2302820	G	A	1455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-0.488;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:56,70:0.56:126
chr9	132572629	rs1220509	T	G	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.54;ReadPosRankSum=1.957;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr9	132585058	rs2296793	G	A	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:232,185:0.44:417
chr9	132586468	rs13300897	C	T	2837.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:150,145:0.49:295
chr9	132590352	rs1806988	AG	GT	2315.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;JOINED;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr9	132590431	rs732074	C	G	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-1.738;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:85,106:0.55:191
chr9	132591272	rs55962905	T	C	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:91,72:0.44:163
chr9	132591372	rs7032945	T	G	4228.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:257,207:0.45:464
chr9	132591425	rs7047271	C	T	5351.77	.	AC=1;AF=0.500;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	0/1:289,260:0.47:549
chr9	132591509	rs3818553	A	G	4245.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:190,205:0.52:395
chr9	132593982	rs2062801	T	C	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,22:0.51:43
chr9	132594362	rs2062800	C	T	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.21;ReadPosRankSum=-0.493;SOR=1.469;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr9	132594378	rs2062799	A	G	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.70;ReadPosRankSum=0.442;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	132595664	rs72755238	G	A	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:99,117:0.54:216
chr9	132595685	rs45507500	C	G	2989.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:122,150:0.55:272
chr9	132596031	rs2274507	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr9	132596899	rs3814548	G	A	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=0.606;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr9	132597021	rs3814547	C	T	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.00;ReadPosRankSum=1.440;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:72,81:0.53:153
chr9	132597621	rs11790613	T	C	1318.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,49:0.49:101
chr9	132618578	rs4836674	T	C	4321.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:242,211:0.47:453
chr9	132618807	rs7862315	G	A	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr9	132620224	rs2417150	A	G	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:163,178:0.52:341
chr9	132620364	rs10819568	T	C	5421.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:215,262:0.55:477
chr9	132620458	rs10819569	C	A	2507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.258;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.91;ReadPosRankSum=0.261;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:71,69:0.49:140
chr9	132620464	rs10760638	C	T	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.490;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=0.033;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:62,62:0.50:124
chr9	132620620	rs2174156	T	C	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr9	132620707	rs2134601	T	C	2988.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:141,143:0.50:284
chr9	132620990	rs2174157	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	132623293	rs1503375	C	T	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:196,226:0.54:422
chr9	132623868	rs10115249	T	C	5792.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:204,282:0.58:486
chr9	132623917	rs10124224	C	A	3991.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:137,185:0.57:322
chr9	132625417	rs4837419	CA	TG	1067.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr9	132625452	rs35595055	C	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:45,41:0.48:86
chr9	132625602	rs2900279	T	C	4502.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:158,216:0.58:374
chr9	132627480	rs913319	C	T	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:82,103:0.56:185
chr9	132627723	rs913320	G	A	2788.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:128,127:0.50:255
chr9	132630231	rs913325	A	G	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:63,74:0.54:137
chr9	132630664	rs10602985	TGAC	T	5823.73	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:110,150:0.58:260
chr9	132631680	rs6478920	T	C	6742.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:323,338:0.51:661
chr9	132632162	rs5900871	G	GC	794.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr9	132632178	rs62583580	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr9	132632653	rs41279154	A	G	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:211,159:0.43:370
chr9	132635653	rs1809959	A	G	4791.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:148,227:0.61:375
chr9	132635944	rs2296787	C	G	5459.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:223,265:0.54:488
chr9	132636031	rs4332226	A	G	7990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.009;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.63;ReadPosRankSum=1.039;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:221,208:0.48:429
chr9	132636031	.	AGT	GGC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=23;MQ=59.96;NF=83;NR=104;PP=2944;QD=20;SC=GAGGTGAGCCAGTGGCCTCGG;SbPval=0.61;Source=Platypus;TC=403;TCF=184;TCR=219;TR=187;WE=132636041;WS=132636021;set=Platypus	GT:AD:AF:DP	0/1:216,187:0.46:403
chr9	132636033	rs4415421	T	C	7941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.56;ReadPosRankSum=0.830;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:220,208:0.49:428
chr9	132636920	rs35899714	C	T	8895.77	.	AC=1;AF=0.500;AN=2;DB;DP=1157;set=Intersection	GT:AD:AF:DP	0/1:689,465:0.40:1154
chr9	132637712	rs735115	G	A	8623.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:426,411:0.49:837
chr9	132640726	rs2296788	T	G	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.60;ReadPosRankSum=0.816;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:58,81:0.58:139
chr9	132652677	rs60841376	G	GGA	365.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr9	132658044	rs2047837	T	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	132658078	rs71738364	G	GT	352.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=1.007;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:132,44:0.25:176
chr9	132662076	rs372056078	AGGAAGG	A	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.503;QD=17.65;ReadPosRankSum=0.442;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr9	132671359	rs3215850	T	TG	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr9	132672319	rs7855720	G	A	9957.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr9	132677036	rs7875866	C	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr9	132678195	rs7867211	G	A	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	132681277	rs5900875	C	CT,CTT	941.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=0.985;SOR=0.667;set=HC	GT:AD:AF:DP	1/2:7,35,19:0.57,0.31:61
chr9	132681619	rs1054874	C	T	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	132686186	rs4836680	A	G	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	132689671	rs4837429	A	G	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	132720720	rs11394970	G	GA	4173.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:2,187:0.99:189
chr9	132816398	rs5900882	T	TC	9178.73	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr9	132838063	rs11446412	C	CT,CTT	1180.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.538;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=5.849;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.99;MQRankSum=-0.490;QD=12.05;ReadPosRankSum=-0.237;SOR=1.512;set=HC	GT:AD:AF:DP	1/2:21,47,30:0.48,0.31:98
chr9	132839747	rs41301535	T	C	1236.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.124;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=1.060;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:91,67:0.42:158
chr9	132841808	rs6478942	G	C	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	132845723	rs7855078	T	A	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr9	132845986	rs10819597	T	C	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr9	132848653	rs11399718	C	CT	2155.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	132862830	rs10081664	AA	TC	5360.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr9	132863035	rs2277196	G	C	3010.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr9	132866883	rs7868997	T	C	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	132866906	rs887536	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	132872686	rs4837460	A	G	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr9	132887249	rs11316087	TA	T	577.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.92;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	132887369	.	C	CTTT	85	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5582;HP=20;HapScore=2;MGOF=57;MMLQ=15;MQ=56.59;NF=1;NR=4;PP=85;QD=17.6;SC=GTGTGGCTTGCTTTTTTTTTT;SbPval=0.86;Source=Platypus;TC=6;TCF=2;TCR=4;TR=5;WE=132887377;WS=132887359;set=Platypus	GT:AD:AF:DP	0/1:1,5:0.83:6
chr9	132891113	rs2286794	G	A	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.88;SOR=2.461;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	132891113	.	GGT	AGC	1020	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=10;NR=32;PP=1020;QD=25.5587589253;SC=GTGTGAATCGGGTCGGCTGCT;SbPval=0.5;Source=Platypus;TC=44;TCF=10;TCR=34;TR=42;WE=132891123;WS=132891103;set=Platypus	GT:AD:AF:DP	1/1:2,42:0.95:44
chr9	132891115	rs7853219	T	C	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	132903767	.	TAA	T	1215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=0.000;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:47,60:0.56:107
chr9	132962801	rs7037407	A	T	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:2,137:0.99:139
chr9	132962816	rs7022964	T	C	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.348;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	132963115	rs887534	T	G	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	132963129	rs887535	G	A	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr9	132963350	rs4837482	T	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	132988709	rs2277200	T	G	6652.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	133048501	rs6478957	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:105,49:0.32:154
chr9	133057105	rs34014907	C	T	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:103,88:0.46:191
chr9	133058082	rs10739777	G	A	8779.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	133058181	rs12348163	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,36:0.40:91
chr9	133058197	rs7045548	C	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr9	133058892	rs34511011	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:113,91:0.45:204
chr9	133069946	rs28435140	A	C	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	133072426	rs12353455	C	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,53:0.62:85
chr9	133260316	rs7858563	T	G	9976.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr9	133260353	rs11244109	G	A	5167.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	133263923	rs7849839	T	C	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	133264059	rs35750041	GC	G	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr9	133270740	rs6597641	T	C	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr9	133280580	rs1475732	C	G	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	133281691	rs11244201	C	T	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	133283255	rs10736862	A	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	133284310	rs10793975	G	A	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	133305911	rs11244308	G	A	8040.77	.	AC=1;AF=0.500;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	0/1:469,401:0.46:870
chr9	133307004	rs11244312	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	133308780	rs1006615	C	T	3526.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:105,149:0.59:254
chr9	133308960	rs12378343	G	A	8330.77	.	AC=1;AF=0.500;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	0/1:480,399:0.45:879
chr9	133324400	rs11243372	A	G	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	133324502	rs10123082	A	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	133325472	rs4740158	T	C	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	133327439	rs1760275	T	C	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	133327835	rs1615006	G	A	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr9	133346920	rs652313	A	G	11840.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr9	133346983	rs641510	A	G	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr9	133347080	rs486889	G	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	133498017	rs35428077	CA	C	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.825;QD=10.71;ReadPosRankSum=0.904;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:21,66:0.76:87
chr9	133498229	.	TA	T	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.472;QD=2.39;ReadPosRankSum=1.000;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr9	133556992	.	TCGC	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.160;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr9	133573185	.	G	GT	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.488;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:55,28:0.34:83
chr9	133710072	rs3134875	G	C	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chr9	133710246	rs2987902	A	T	4169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=1.367;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:203,212:0.51:415
chr9	133710722	rs11433465	G	GC	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	133710740	rs11433464	G	GC	1379.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.58;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	133710804	rs7866590	T	C	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	133710819	rs11433463	T	TC	8259.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	133748083	rs2070997	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.547;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr9	133755282	rs11793797	T	G	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:28,29:0.51:57
chr9	133755528	rs2227985	A	G	2167.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:157,111:0.41:268
chr9	133755754	rs12005009	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr9	133760029	rs2229070	C	G	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:245,171:0.41:416
chr9	133761001	rs1056171	A	G	3914.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:235,201:0.46:436
chr9	133769169	rs3847193	G	A	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:218,162:0.43:380
chr9	133779448	rs11792889	A	G	3569.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:229,181:0.44:410
chr9	133884820	rs3739512	T	G	6564.77	.	AC=1;AF=0.500;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	0/1:438,330:0.43:768
chr9	133911598	rs2275132	A	G	12477.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr9	133911706	rs2275131	C	T	14828.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr9	133911821	rs2275130	C	T	4013.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	133914570	rs2293518	G	A	18181.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr9	133936571	rs3739510	C	G	4744.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:154,214:0.58:368
chr9	133942624	rs3765569	A	G	2603.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:61,108:0.64:169
chr9	133944522	rs2275142	C	T	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.318;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-0.785;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr9	133944525	rs2275141	A	C	568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.888;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.77;ReadPosRankSum=-0.626;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr9	133946849	rs34910694	C	CT	3040.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:116,140:0.55:256
chr9	133946909	rs10901344	G	A	8563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.630;QD=20.64;ReadPosRankSum=0.908;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:194,221:0.53:415
chr9	133946915	rs10901345	C	G	8734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.603;QD=20.80;ReadPosRankSum=-0.033;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:192,228:0.54:420
chr9	133948049	rs2275140	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr9	133963101	rs4740413	A	G	5395.77	.	AC=1;AF=0.500;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	0/1:225,249:0.53:474
chr9	133963217	rs2275143	T	C	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:108,102:0.49:210
chr9	133967007	rs117361076	T	G	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:110,129:0.54:239
chr9	133967240	rs818056	T	C	7025.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:225,321:0.59:546
chr9	133967295	rs710074	C	A	3921.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:134,113:0.46:247
chr9	133967310	rs10696088	T	TCA	3607.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:116,94:0.45:210
chr9	133972131	rs2478784	G	T	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:116,88:0.43:204
chr9	133981491	rs2872823	G	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.938;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr9	133981629	rs2315075	T	C	1196.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:77,62:0.45:139
chr9	133981721	rs2315076	T	C	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=5.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=0.483;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:78,61:0.44:139
chr9	133986836	rs353528	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	133986848	rs353527	G	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr9	133986980	rs353526	T	G	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	133987060	rs353525	G	A	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chr9	133996460	rs353511	T	G	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr9	133996503	rs353510	T	A	6068.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	134014642	rs368047951	CT	C	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=11.183;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.959;QD=3.55;ReadPosRankSum=-0.674;SOR=0.147;set=HC	GT:AD:AF:DP	0/1:37,37:0.50:74
chr9	134020092	rs103612	C	T	17811.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr9	134022739	rs150981282	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr9	134039596	rs117917551	G	A	1817.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:68,78:0.53:146
chr9	134049353	.	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.844;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr9	134064345	rs2274427	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr9	134067795	rs4602942	G	A	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr9	134076950	rs56349054	C	CA	682.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.660;SOR=0.397;set=HC	GT:AD:AF:DP	1/1:7,41:0.85:48
chr9	134136515	rs352952	A	G	13817.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr9	134136677	rs352951	A	G	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr9	134140113	rs7859822	C	T	1437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=5.501;MLEAC=1;MLEAF=0.500;MQ=61.25;MQRankSum=1.658;QD=18.92;ReadPosRankSum=-1.456;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:36,40:0.53:76
chr9	134140116	rs35869614	T	TC	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=61.40;MQRankSum=0.000;QD=3.62;ReadPosRankSum=3.471;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:35,21:0.38:56
chr9	134165368	rs7029366	G	C	5329.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:215,260:0.55:475
chr9	134165888	rs11244356	T	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr9	134165899	rs11244357	A	G	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,42:0.52:81
chr9	134183379	rs2966332	C	T	9881.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:347,459:0.57:806
chr9	134183503	rs2986606	T	C	8670.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:320,407:0.56:727
chr9	134322324	rs2966340	G	A	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	134323240	rs2994064	A	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	134334588	rs34553878	A	G	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:210,163:0.44:373
chr9	134342938	rs10793870	T	C	972.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr9	134346315	rs4310250	T	C	28877.77	.	AC=2;AF=1.00;AN=2;DB;DP=1100;set=Intersection	GT:AD:AF:DP	1/1:0,1097:1.00:1097
chr9	134348807	rs4276727	G	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	134348818	rs5900941	TG	T	4623.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	134350323	rs10736851	C	G	12672.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr9	134350458	rs10751478	C	T	9371.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr9	134350647	rs10793873	T	C	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr9	134351065	rs7858488	G	T	12145.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:3,445:0.99:448
chr9	134351343	rs11243403	C	T	25719.77	.	AC=2;AF=1.00;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	1/1:1,957:1.00:958
chr9	134358657	rs10901061	G	C	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	134359918	rs10751480	G	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	134360015	rs10793874	G	T	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	134361318	rs3808829	C	A	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr9	134361581	rs10793875	T	A	14428.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:1,542:1.00:543
chr9	134361627	rs10901062	G	A	7423.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	134371282	rs150008163	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr9	134382673	rs6597501	C	T	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	134384277	rs11243404	T	C	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	134384500	rs11999204	C	T	10636.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	134384513	rs28447664	A	G	9192.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr9	134385436	rs2296949	A	G	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	134385599	rs2018621	A	G	9622.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr9	134386659	rs34159422	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,25:0.45:55
chr9	134386675	rs4740163	T	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr9	134386744	rs10901065	T	C	3699.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	134386903	rs10901066	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	134387315	rs10901068	C	G	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr9	134387488	rs3739494	T	C	10231.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr9	134390993	rs77373739	C	T	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr9	134394163	rs1547768	A	G	5931.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:249,291:0.54:540
chr9	134394610	rs749590	G	A	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.481;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=1.255;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:53,34:0.39:87
chr9	134394610	.	GGG	AGA	1125	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=25;MQ=60.0;NF=26;NR=4;PP=1125;QD=39.2822624954;SC=TCATTTGACCGGGCAGTCTTG;SbPval=0.55;Source=Platypus;TC=84;TCF=73;TCR=11;TR=30;WE=134394620;WS=134394600;set=Platypus	GT:AD:AF:DP	1/0:54,30:0.36:84
chr9	134394612	rs749591	G	A	1259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.349;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=0.997;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:55,35:0.39:90
chr9	134394646	rs2010635	A	G	1965.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr9	134395628	rs2277152	C	G	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:120,127:0.51:247
chr9	134395687	rs2277153	C	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:54,57:0.51:111
chr9	134397624	rs4740165	C	T	5207.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:226,245:0.52:471
chr9	134398534	rs3739495	T	C	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:64,65:0.50:129
chr9	134401335	rs2296957	C	T	3850.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:139,190:0.58:329
chr9	134404199	rs4740260	A	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr9	134404784	rs2296956	G	C	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr9	134406071	rs7867616	C	G	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr9	134406131	rs3904960	G	T	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr9	134406647	rs4740261	A	G	301.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	134433417	rs28731115	C	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr9	134433463	rs4740167	T	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr9	134465398	rs3818581	T	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:45,37:0.45:82
chr9	134467578	rs3215862	GA	G	1019.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:96,62:0.39:158
chr9	134473517	rs2296950	T	C	3968.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:248,196:0.44:444
chr9	134477387	rs3842210	AG	A	969.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr9	134479293	rs7037668	A	G	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:100,90:0.47:190
chr9	134480272	.	G	GGT	1033.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.929;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:75,49:0.40:124
chr9	134497450	rs7023385	C	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr9	134949155	rs200460682	GA	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.53;ReadPosRankSum=-0.630;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:116,27:0.19:143
chr9	135105964	rs4962173	A	G	9935.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr9	135117178	rs12342966	T	G	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	135139901	rs1056899	T	C	4173.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:140,185:0.57:325
chr9	135147275	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.022;QD=0.64;ReadPosRankSum=0.744;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr9	135150858	rs62576467	C	T	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr9	135152543	rs201575546	T	TA	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.603;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:205,64:0.24:269
chr9	135153668	rs11243704	C	T	2557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=0.076;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:83,71:0.46:154
chr9	135153673	rs11243705	T	C	2433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.78;ReadPosRankSum=0.948;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:81,64:0.44:145
chr9	135202829	rs543573	T	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr9	135203231	rs1183768	C	T	14476.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr9	135203409	rs1185193	A	C	8139.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr9	135206460	rs9411449	A	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	135211609	rs111938515	AAC	A	2032.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	135221597	rs497650	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	135263573	rs556386	G	T	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr9	135265876	rs471890	T	C	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	135271987	rs1166321	T	C	7810.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr9	135272061	rs5900975	GT	G	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.480;QD=12.00;ReadPosRankSum=0.711;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:10,52:0.84:62
chr9	135273507	rs569288	G	A	5469.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	135273518	rs13298007	C	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:65,96:0.60:161
chr9	135273607	rs504525	C	G	9746.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr9	135273759	rs5900976	G	GA	3591.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	135276710	rs553323	C	T	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr9	135276784	rs66478129	T	C	2354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=0.965;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:85,117:0.58:202
chr9	135277007	rs3739916	C	T	5243.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:200,240:0.55:440
chr9	135374898	rs562350	T	C	8905.77	.	AC=1;AF=0.500;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	0/1:524,463:0.47:987
chr9	135418329	rs56229164	A	G	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:391,265:0.40:656
chr9	135500888	rs56990165	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=3.545;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.826;QD=0.37;ReadPosRankSum=-0.256;SOR=1.226;set=HC	GT:AD:AF:DP	0/1:105,22:0.17:127
chr9	135601354	rs396819	T	C	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	135601367	rs396801	G	C	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	135602727	rs1999121	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	135603108	rs139398120	TCC	T	720.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr9	135702490	rs13299768	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr9	135730078	rs214640	T	G	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:70,63:0.47:133
chr9	135739226	rs2251448	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr9	135764081	rs1062218	A	G	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:66,45:0.41:111
chr9	135776034	rs1076160	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr9	135863485	rs615667	A	G	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	135863502	rs62579580	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	135937248	rs2735395	G	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr9	135947060	.	CT	C	4371.73	.	AC=1;AF=0.500;AN=2;DP=488;set=Intersection	GT:AD:AF:DP	0/1:264,223:0.46:487
chr9	135957806	rs28581998	G	T	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr9	135958007	rs200063025	C	T	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.78;QD=22.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr9	135961787	rs10901232	A	G	13146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.578;QD=18.65;ReadPosRankSum=-0.302;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:342,363:0.51:705
chr9	135961796	rs10901233	C	T	11981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.614;QD=19.84;ReadPosRankSum=-0.347;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:297,307:0.51:604
chr9	135961809	rs679779	T	C	18388.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=38.23;SOR=1.639;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr9	135961809	.	TATGAC	CATGAC,CATGAT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.23;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=59.07;NF=155,71;NR=311,139;PP=2962,2944;QD=20;SC=TCTCTAAGGCTATGACCGCCT;SbPval=0.5;Source=Platypus;TC=468;TCF=155;TCR=313;TR=466,210;WE=135961822;WS=135961777;set=Platypus	GT:AF:DP	0/1:1.00:468
chr9	135961814	rs189997548	C	T	8731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.493;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=3.538;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-3.413;QD=19.40;ReadPosRankSum=-0.827;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:229,221:0.49:450
chr9	135974079	rs1062356	G	C	8800.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr9	135974100	rs886017	G	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:214,134:0.39:348
chr9	135976664	rs34018822	C	T	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:214,124:0.37:338
chr9	135976698	rs35108384	G	A	4730.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:368,244:0.40:612
chr9	135977583	rs2519091	C	T	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:99,63:0.39:162
chr9	135978153	rs694881	G	C	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:168,151:0.47:319
chr9	135979751	rs598499	C	G	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:114,96:0.46:210
chr9	135982088	rs2073822	A	C	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:170,251:0.60:421
chr9	135983504	rs2285375	T	C	3411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.836;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.539;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:211,179:0.46:390
chr9	135983902	rs34479413	G	A	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr9	135985166	rs3747817	G	A	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:115,110:0.49:225
chr9	135985796	rs3761824	C	T	1504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-1.850;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:107,79:0.42:186
chr9	136004770	rs34429998	C	T	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	136029138	rs35902535	G	A	9070.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:343,429:0.56:772
chr9	136029645	rs35898523	G	T	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:149,154:0.51:303
chr9	136030458	rs651453	C	T	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr9	136080746	rs1052517	A	G	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr9	136081173	.	C	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.076;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=1.378;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=-5.570;QD=5.51;ReadPosRankSum=0.876;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:73,18:0.20:91
chr9	136081174	.	A	G	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.120;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-5.635;QD=5.40;ReadPosRankSum=1.053;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr9	136081176	.	C	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-5.635;QD=5.40;ReadPosRankSum=1.095;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:75,18:0.19:93
chr9	136081180	.	G	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.409;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=55.64;MQRankSum=-5.825;QD=4.83;ReadPosRankSum=1.355;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:81,18:0.18:99
chr9	136081185	.	T	A	528.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.540;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-6.126;QD=4.85;ReadPosRankSum=1.788;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:91,18:0.17:109
chr9	136081186	.	G	GA	552.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=56.06;MQRankSum=-6.126;QD=5.07;ReadPosRankSum=1.741;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:91,18:0.17:109
chr9	136081191	.	T	G	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.202;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-5.774;QD=5.02;ReadPosRankSum=0.674;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:100,22:0.18:122
chr9	136081193	.	G	GCA	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=6.147;MLEAC=1;MLEAF=0.500;MQ=56.63;MQRankSum=-5.998;QD=6.61;ReadPosRankSum=1.120;SOR=1.656;set=HC	GT:AD:AF:DP	0/1:108,22:0.17:130
chr9	136081196	rs150469509	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.975;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-5.544;QD=6.25;ReadPosRankSum=-1.533;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:112,32:0.22:144
chr9	136081261	rs137892402	AG	A	3538.73	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:317,134:0.30:451
chr9	136081283	rs147134232	C	T	5963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.00;MQRankSum=-6.232;QD=10.65;ReadPosRankSum=0.243;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:390,170:0.30:560
chr9	136081289	rs146582704	T	C	6149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.94;MQRankSum=-6.924;QD=10.51;ReadPosRankSum=-0.224;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:404,181:0.31:585
chr9	136081391	rs6597608	G	A	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr9	136081466	rs6597609	C	T	6588.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,177:0.99:179
chr9	136081598	rs28507496	C	T	8903.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:1,342:1.00:343
chr9	136083580	rs2073870	T	G	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	136083638	rs72769499	C	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:66,53:0.45:119
chr9	136083801	rs4310274	A	G	5326.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	136131056	rs56392308	CG	C	2089.73	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:98,77:0.44:175
chr9	136131651	rs1053878	G	A	6352.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:304,298:0.50:602
chr9	136132908	rs8176719	T	TC	1578.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:64,50:0.44:114
chr9	136133380	.	CGGG	C	5690.73	.	AC=2;AF=1.00;AN=2;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	136133506	rs512770	A	G	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr9	136133531	rs4962040	A	G	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:81,97:0.54:178
chr9	136133582	rs8176712	AG	A	2552.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	136135137	.	GCTTCTGTCCACAC	G	2480.73	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr9	136135195	rs549331	G	C	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	136135237	rs549443	AT	GC	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	136135365	rs624601	A	G	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	136135444	rs551322	G	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr9	136136770	rs688976	A	C	16869.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr9	136150466	rs616154	C	T	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	136150484	rs559723	A	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	136185077	rs9411507	T	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr9	136185324	rs11789139	C	G	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.197;MLEAC=1;MLEAF=0.500;MQ=53.99;MQRankSum=-3.009;QD=1.31;ReadPosRankSum=-1.331;SOR=1.580;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr9	136185358	rs544622	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr9	136199466	rs886089	G	A	7140.77	.	AC=1;AF=0.500;AN=2;DB;DP=825;set=Intersection	GT:AD:AF:DP	0/1:452,370:0.45:822
chr9	136199503	rs886090	G	A	7004.77	.	AC=1;AF=0.500;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	0/1:422,360:0.46:782
chr9	136201470	rs563666	C	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr9	136208442	rs78711238	C	T	1854.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:101,90:0.47:191
chr9	136211226	rs41296103	G	T	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:64,68:0.52:132
chr9	136211248	rs9645009	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr9	136213521	rs616836	T	C	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:65,101:0.61:166
chr9	136214955	rs553877	A	G	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:89,111:0.56:200
chr9	136215142	rs77451162	G	A	4977.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:216,234:0.52:450
chr9	136215244	rs375770036	GTGGATTAGAGCCCC	G	1386.73	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr9	136215642	rs7019683	T	C	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:72,81:0.53:153
chr9	136217675	rs114090428	T	G	4170.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:168,196:0.54:364
chr9	136218889	rs2021976	G	A	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:105,157:0.60:262
chr9	136219295	rs41296099	A	G	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:103,112:0.52:215
chr9	136221752	rs116779216	G	C	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:192,208:0.52:400
chr9	136223043	rs59358281	C	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr9	136223221	.	GCCCCGCACCCCGCA	G	382.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr9	136227019	rs56677055	G	C	5399.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:229,256:0.53:485
chr9	136227260	rs12763	A	G	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:64,92:0.59:156
chr9	136232758	rs2269894	T	C	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:108,97:0.47:205
chr9	136234124	rs1179033	A	G	7672.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr9	136245903	rs7852803	A	G	860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.414;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:55,44:0.44:99
chr9	136251358	rs34399743	G	A	6736.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:256,315:0.55:571
chr9	136253140	rs41306718	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr9	136256602	rs11340207	AG	A	3686.73	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:106,139:0.57:245
chr9	136256626	rs4962134	G	A	3985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.27;ReadPosRankSum=0.266;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:76,103:0.58:179
chr9	136256630	rs4962135	C	T	3975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.319;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.85;ReadPosRankSum=0.211;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:73,101:0.58:174
chr9	136260696	rs41306714	G	C	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr9	136260721	rs41297211	G	A	1234.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:66,54:0.45:120
chr9	136261030	rs57394597	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr9	136266792	rs144943703	CTGTGAGCCT	C	2441.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:58,65:0.53:123
chr9	136267173	rs7025970	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr9	136267869	rs4962139	A	G	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,34:0.47:73
chr9	136268084	rs3124747	A	G	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:119,127:0.52:246
chr9	136270584	rs41316994	G	C	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:100,141:0.59:241
chr9	136272787	.	A	AT	2067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=-1.724;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:165,147:0.47:312
chr9	136274056	.	C	CTGTGTG	43.73	.	AC=1;AF=0.500;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=1.75;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr9	136277480	rs2285486	A	G	4422.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:169,218:0.56:387
chr9	136290607	rs2301611	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,46:0.58:79
chr9	136291063	rs3118667	C	T	5913.77	.	AC=1;AF=0.500;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	0/1:268,281:0.51:549
chr9	136291539	rs3118668	A	G	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr9	136291594	rs28515121	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr9	136291621	rs28757785	A	T	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,9:0.29:31
chr9	136293819	.	C	T	855.77	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr9	136295290	rs3124773	A	C	7727.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	136301982	rs2301612	C	G	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:168,121:0.42:289
chr9	136303253	rs2028002	T	C	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:104,92:0.47:196
chr9	136305689	rs36221220	T	C	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,89:0.56:159
chr9	136311017	rs652600	G	A	8493.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr9	136324239	rs1055432	C	A	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:100,69:0.41:169
chr9	136325160	rs2301614	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:126,67:0.35:193
chr9	136328657	rs3124765	T	C	7582.77	.	AC=1;AF=0.500;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	0/1:418,393:0.48:811
chr9	136339174	.	G	A	1605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=2.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.55;ReadPosRankSum=-1.074;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:59,80:0.58:139
chr9	136340200	rs2073935	T	G	2256.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:155,118:0.43:273
chr9	136384162	rs11523307	A	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:109,107:0.50:216
chr9	136385437	rs9802272	A	G	5665.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:235,268:0.53:503
chr9	136385453	rs9802273	A	G	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:207,222:0.52:429
chr9	136390015	rs13300181	A	G	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr9	136401606	rs11507717	A	C	8163.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr9	136402345	rs11516156	T	A	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	136404775	rs148654239	A	ACGGCTGTCC,ACGGCTGTCCCGGCTGTCCCGGCTGTCC	3011.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/2:0.75,0.25:52
chr9	136405042	rs13302230	T	A	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:150,138:0.48:288
chr9	136409457	rs9802736	A	G	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	136409580	rs9802778	T	G	6625.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr9	136412170	rs2073874	C	T	19641.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr9	136412236	rs2073875	A	T	19671.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr9	136412255	rs2073876	A	C	16731.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:0,639:1.00:639
chr9	136412346	rs2073878	C	T	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	136412382	rs2073879	T	C	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	136518097	rs77905	A	G	9445.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr9	136521328	rs146031372	G	A	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr9	136523669	rs129882	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136532107	rs7854480	G	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	136536633	rs2797840	G	A	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	136536679	rs129932	G	A	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	136536793	rs2519123	C	G	9033.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr9	136561303	rs2502739	A	T	5923.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr9	136561567	rs2427998	G	T	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr9	136569974	rs2510248	G	A	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr9	136570004	rs2502747	GT	AC	3647.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr9	136573412	rs2073815	G	A	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr9	136578271	rs582326	G	C	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr9	136584196	rs2027963	T	G	10102.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr9	136590812	rs150689824	A	AAAAC	1638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.542;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.936;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.385;QD=23.75;ReadPosRankSum=-0.434;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:26,43:0.62:69
chr9	136594864	rs2427988	A	G	10044.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:2,397:0.99:399
chr9	136596397	rs916619	G	A	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:42,53:0.56:95
chr9	136599146	rs573904	C	T	4474.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:160,209:0.57:369
chr9	136599315	rs2488553	G	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	136629256	rs66574029	CTG	C	8757.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=2.354;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.285;QD=30.84;ReadPosRankSum=-0.390;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:3,281:0.99:284
chr9	136629298	rs2797825	A	G	6830.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	136629399	rs2797826	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	136637177	.	A	ACACACGGCCCCGGCGGTCACTGCGTGAGGGC	5324.73	.	AC=2;AF=1.00;AN=2;DP=391;set=Intersection	GT:AD:AF:DP	1/1:6,224:0.97:230
chr9	136637242	rs2510244	A	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr9	136640226	rs2488559	G	A	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr9	136641235	rs667183	C	T	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	136641313	rs2077065	G	C	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr9	136643994	rs602990	T	C	17699.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr9	136645079	rs540626	G	C	11182.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr9	136648535	rs2488563	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr9	136648565	rs680458	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:26,30:0.54:56
chr9	136648611	rs56145872	A	AG	877.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:63,39:0.38:102
chr9	136651125	rs56072078	GGTGCCT	G	3764.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	136651185	rs2023664	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	136652224	rs75475678	G	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr9	136652465	rs2258889	A	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	136652518	rs56135466	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr9	136654479	.	G	C	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DP=456;ExcessHet=3.0103;FS=2.362;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-1.669;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:368,83:0.18:451
chr9	136654580	rs45577039	C	T	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr9	136662928	rs7865299	A	G	5680.77	.	AC=1;AF=0.500;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	0/1:441,297:0.40:738
chr9	136672493	rs2510246	A	G	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:111,68:0.38:179
chr9	136672529	rs2428089	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:85,57:0.40:142
chr9	136804211	rs2073886	G	A	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	136905474	rs467379	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr9	136915508	rs2301576	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr9	137004907	rs28581991	T	C	2290.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:54,92:0.63:146
chr9	137005023	rs11556390	C	T	20795.77	.	AC=2;AF=1.00;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	1/1:0,790:1.00:790
chr9	137007298	rs28648812	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.54;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr9	137013582	rs28695913	G	A	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	137017051	rs34873912	C	T	2832.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.635;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:141,137:0.49:278
chr9	137019511	rs28703244	T	C	18596.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:0,698:1.00:698
chr9	137021803	rs28522840	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	137209421	.	CTAA	C	2316.73	.	AC=1;AF=0.500;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	0/1:37,59:0.61:96
chr9	137271318	rs35196866	C	A	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr9	137271408	rs34133915	G	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr9	137271454	rs34189335	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr9	137293514	rs55836231	C	T	9820.77	.	AC=1;AF=0.500;AN=2;DB;DP=1100;set=Intersection	GT:AD:AF:DP	0/1:623,476:0.43:1099
chr9	137293761	rs2234753	G	A	10443.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr9	137299949	rs1805352	C	A	15720.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr9	137320855	rs3118570	G	T	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr9	137321156	rs1536475	A	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr9	137325822	rs3132293	T	C	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	137328286	rs1805343	G	A	11302.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr9	137600265	rs35817169	C	CG,CGG	527.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=72;set=Intersection	GT:AF:DP	0/1:0.43:72
chr9	137600269	.	GT	G	311	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=3;HapScore=3;MGOF=5;MMLQ=23;MQ=60.0;NF=29;NR=2;PP=311;QD=11.1290322581;SC=AACTCCCGGGGTGGGGGCTCT;SbPval=0.84;Source=Platypus;TC=75;TCF=67;TCR=8;TR=31;WE=137600278;WS=137600255;set=Platypus	GT:AD:AF:DP	0/1:44,31:0.41:75
chr9	137600270	rs4841925	T	G	2219.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=6.442;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.00;ReadPosRankSum=0.222;SOR=4.033;set=HC	GT:AD:AF:DP	1/1:3,71:0.96:74
chr9	137600687	rs3128588	C	T	20659.77	.	AC=2;AF=1.00;AN=2;DB;DP=748;set=Intersection	GT:AD:AF:DP	1/1:0,746:1.00:746
chr9	137623534	rs56385965	C	T	4842.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:192,228:0.54:420
chr9	137623601	rs3124310	C	G	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:51,74:0.59:125
chr9	137630568	rs3109677	C	T	7619.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr9	137630587	rs3128612	T	C	6443.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr9	137658722	rs4842158	G	A	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-0.051;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:55,53:0.49:108
chr9	137658730	rs4842159	T	C	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.96;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr9	137659005	rs4842160	A	T	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:71,129:0.65:200
chr9	137660114	rs41302968	G	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr9	137660194	rs4842162	G	T	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:93,96:0.51:189
chr9	137660375	rs10776900	A	G	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:103,134:0.57:237
chr9	137686906	rs4072883	C	T	8643.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	137687038	rs4072882	A	G	15706.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr9	137688048	rs10776902	T	C	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	137688577	rs3811161	A	G	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr9	137688624	rs3811160	A	G	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	137688657	rs3811159	A	G	14617.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr9	137688780	rs142676375	GCCTGTCCCCTCCAAAACCCA	G	29730.73	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr9	137688863	rs72774465	G	A	10873.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=27.32;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,398:1.00:398
chr9	137688926	rs7863390	C	T	1484.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chr9	137690318	rs4240707	A	T	11225.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:1,429:1.00:430
chr9	137694032	rs10858281	C	A	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr9	137702200	rs3827850	G	C	7672.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.55;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr9	137702209	rs3827849	G	A	6645.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.83;SOR=2.039;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr9	137704605	.	A	AGT	293.73	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr9	137707834	rs3827848	G	A	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:218,168:0.44:386
chr9	137707942	rs4841934	T	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	137708803	rs3811149	A	G	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr9	137708934	rs10858282	T	G	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,136:0.99:137
chr9	137708960	rs10776910	A	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr9	137708973	rs10858283	A	G	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	137709517	rs7854010	T	C	1788.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr9	137709780	rs11792894	T	C	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr9	137709795	rs7847840	C	T	4168.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr9	137710961	rs10745388	G	A	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	137711997	rs2228560	G	C	13220.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr9	137714027	rs9697186	T	C	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.73;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	137714191	rs74960017	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr9	137715150	rs3128599	AT	TG	7415.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;JOINED;set=Intersection	GT:AD:AF:DP	0/1:182,188:0.51:370
chr9	137717610	rs7868111	T	C	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:98,116:0.54:214
chr9	137733937	rs12554062	T	G	5123.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:320,248:0.44:568
chr9	137741293	.	G	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.10;MQRankSum=0.178;QD=7.20;ReadPosRankSum=0.090;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr9	137741298	.	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=45.21;MQRankSum=-0.400;QD=5.82;ReadPosRankSum=-0.972;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr9	137742124	rs62571442	G	A	49855.77	.	AC=2;AF=1.00;AN=2;DB;DP=1905;set=Intersection	GT:AD:AF:DP	1/1:0,1896:1.00:1896
chr9	137742496	.	TGGGATCAGACCTCCCAGGGAGCACGGGATCACACCTCCCAGGAAAGCAC	T	18176.73	.	AC=2;AF=1.00;AN=2;DP=1271;set=Intersection	GT:AD:AF:DP	1/1:9,692:0.99:701
chr9	137772792	rs3128627	C	T	3978.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr9	137774545	rs3124955	T	C	2074.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:112,100:0.47:212
chr9	137775139	rs3128624	A	G	4416.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:163,207:0.56:370
chr9	137775155	rs4520243	T	C	3678.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:157,187:0.54:344
chr9	137801314	rs2989734	A	G	11978.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr9	137801416	rs2989735	T	C	11216.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr9	137801463	.	C	T	4034.77	.	AC=1;AF=0.500;AN=2;DP=371;set=Intersection	GT:AD:AF:DP	0/1:174,194:0.53:368
chr9	137801800	rs1071583	T	C	12331.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr9	137804360	rs2274845	A	G	14554.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.146;QD=25.40;ReadPosRankSum=1.865;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:2,571:1.00:573
chr9	137804830	rs2070622	G	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	137806329	rs11421281	T	TC	22144.73	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr9	137806334	rs2989721	A	G	22093.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,484:1.00:484
chr9	137806344	rs3012788	C	T	19797.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,438:1.00:438
chr9	137806487	rs2989722	G	A	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	137806783	rs3012789	G	A	6899.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr9	137808427	rs2382714	T	A	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	137968096	.	C	T	4603.77	.	AC=1;AF=0.500;AN=2;DP=406;set=Intersection	GT:AD:AF:DP	0/1:185,216:0.54:401
chr9	137968919	rs61043559	G	GAA	16393.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr9	137968996	.	G	GCA	3814.73	.	AC=1;AF=0.500;AN=2;DP=479;set=Intersection	GT:AD:AF:DP	0/1:285,147:0.34:432
chr9	137978552	rs4446800	A	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	137978638	rs695156	T	G	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	137982127	rs500461	T	C	8148.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr9	137982232	rs56337838	T	G	3362.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.03;ReadPosRankSum=-0.773;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,103:0.98:105
chr9	137982234	rs10672761	G	GTT	2159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.82;ReadPosRankSum=-1.134;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:23,76:0.77:99
chr9	137982236	rs201073165	G	T	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.630;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:88,20:0.19:108
chr9	137987965	.	T	TC	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=0.908;QD=17.52;ReadPosRankSum=2.965;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr9	137987971	.	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=0.524;QD=12.18;ReadPosRankSum=-1.718;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr9	137988675	rs655559	T	C	5661.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	137998709	rs35408956	T	A	4298.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:141,196:0.58:337
chr9	138012070	rs11103684	G	A	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr9	138236031	rs914398	A	G	7171.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:273,350:0.56:623
chr9	138236212	rs914397	T	G	6470.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	138236305	rs4842254	T	C	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chr9	138377498	rs34151777	G	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr9	138378856	rs2078266	A	G	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	138379002	rs1975518	T	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chr9	138387483	rs2274650	G	A	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr9	138391299	rs7037251	T	A	4263.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:295,224:0.43:519
chr9	138391517	rs2274651	A	C	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:103,88:0.46:191
chr9	138391774	rs2274652	C	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:71,52:0.42:123
chr9	138415201	rs56239374	C	G	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-1.431;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:80,53:0.40:133
chr9	138415238	rs56120410	C	G	646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-0.102;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr9	138437869	rs62578292	G	A	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=49.27;MQRankSum=-0.000;QD=2.81;ReadPosRankSum=0.875;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr9	138438976	rs78161279	G	C	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=15.962;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-7.544;QD=10.43;ReadPosRankSum=0.089;SOR=3.233;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr9	138438980	rs4006724	G	T	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=13.937;MLEAC=1;MLEAF=0.500;MQ=55.18;MQRankSum=-7.782;QD=10.67;ReadPosRankSum=-0.343;SOR=2.606;set=HC	GT:AD:AF:DP	0/1:47,21:0.31:68
chr9	138438982	rs4006725	T	G	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.253;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=13.986;MLEAC=1;MLEAF=0.500;MQ=55.32;MQRankSum=-7.647;QD=10.37;ReadPosRankSum=-0.329;SOR=2.639;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr9	138439005	rs504061	A	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:70,48:0.41:118
chr9	138439189	rs148884427	G	GC	5400.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:132,139:0.51:271
chr9	138439190	rs62578296	G	T	5409.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:132,139:0.51:271
chr9	138439806	rs72766543	C	T	4576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=1.105;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:120,120:0.50:240
chr9	138439809	rs72766544	T	C	4567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.72;ReadPosRankSum=2.342;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:125,119:0.49:244
chr9	138439904	rs72766546	C	T	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:82,83:0.50:165
chr9	138440554	rs55695858	G	C	6479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-3.273;QD=20.57;ReadPosRankSum=-2.375;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:153,162:0.51:315
chr9	138440562	rs3178137	C	T	6872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-3.458;QD=18.93;ReadPosRankSum=-2.576;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:171,192:0.53:363
chr9	138440624	rs3827835	G	C	15342.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:360,395:0.52:755
chr9	138440641	rs2853652	T	C	16232.77	.	AC=1;AF=0.500;AN=2;DB;DP=805;set=Intersection	GT:AD:AF:DP	0/1:356,447:0.56:803
chr9	138440726	rs3827838	C	T	11952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.247;QD=22.18;ReadPosRankSum=2.076;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:236,303:0.56:539
chr9	138440726	.	CCA	TCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=4;HapScore=1;MGOF=20;MMLQ=23;MQ=59.99;NF=122;NR=155;PP=2944;QD=20;SC=CCCATGACCCCCATGTCCTCC;SbPval=0.52;Source=Platypus;TC=513;TCF=227;TCR=286;TR=277;WE=138440736;WS=138440716;set=Platypus	GT:AD:AF:DP	0/1:236,277:0.54:513
chr9	138440728	rs3827839	A	G	11963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.247;QD=22.79;ReadPosRankSum=2.125;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:230,295:0.56:525
chr9	138440748	rs3827840	C	T	9612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.202;QD=23.62;ReadPosRankSum=-0.051;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:171,236:0.58:407
chr9	138440756	rs3827841	G	A	8723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.188;QD=23.97;ReadPosRankSum=-0.830;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:151,213:0.59:364
chr9	138441685	rs112851559	G	GC	3993.73	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:172,157:0.48:329
chr9	138441760	rs7859414	C	A	3406.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:233,176:0.43:409
chr9	138453811	rs697448	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	138517853	rs1333241	G	C	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr9	138518010	rs1333240	A	G	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr9	138518114	rs11103106	G	A	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr9	138523332	rs1333234	C	A	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr9	138523411	rs1333233	C	T	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr9	138557256	rs492708	C	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr9	138586198	rs572335	G	A	11625.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:2,434:1.00:436
chr9	138586309	rs484524	A	G	19874.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr9	138586457	rs548911	T	C	1136.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:81,59:0.42:140
chr9	138586940	rs55674357	C	A	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:49,49:0.50:98
chr9	138586966	rs3119932	GC	AA	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	138587203	rs2769033	A	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	138587220	rs2483364	T	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	138589311	rs7036532	G	A	516.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr9	138590138	rs506498	T	C	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	138590347	rs529976	C	T	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	138590680	rs474061	G	C	2471.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr9	138590928	rs471525	C	T	4019.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr9	138591230	rs558113	C	T	10134.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr9	138591266	rs559326	A	G	10033.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr9	138594266	rs5901089	A	AC	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	138634454	rs60345996	CCCCCAG	C	2295.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:86,62:0.42:148
chr9	138662309	rs10776844	A	G	5353.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:335,270:0.45:605
chr9	138662661	rs10858172	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:88,36:0.29:124
chr9	138669261	rs914428	G	A	16040.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr9	138676328	.	GCTCCCTCCCTCC	G	588.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=0.000;QD=34.63;ReadPosRankSum=1.567;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr9	138679911	rs12555229	C	G	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:139,212:0.60:351
chr9	138706844	rs3739465	A	G	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr9	138707727	rs913342	C	G	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,71:0.52:136
chr9	138754219	rs55684126	CT	C	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.016;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:31,13:0.30:44
chr9	138754582	rs2039330	A	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	138816898	rs4842048	T	C	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=1.223;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr9	138816906	rs4842049	T	C	7372.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr9	138817055	rs79371084	C	T	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:65,113:0.63:178
chr9	138817178	rs10776854	C	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr9	138825117	rs6569	A	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:27,57:0.68:84
chr9	138831567	rs1044193	T	C	15887.77	.	AC=1;AF=0.500;AN=2;DB;DP=1272;set=Intersection	GT:AD:AF:DP	0/1:527,742:0.58:1269
chr9	138836941	rs140946801	GCCT	G	6324.73	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:207,169:0.45:376
chr9	138837113	rs10776856	T	C	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr9	138837893	rs72771957	C	A	6155.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:248,291:0.54:539
chr9	138837958	rs2297691	C	T	2310.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:105,107:0.50:212
chr9	138838140	rs7028495	T	C	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr9	138838305	rs2297690	G	A	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:38,85:0.69:123
chr9	138839888	rs2297689	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr9	138852789	rs35679979	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr9	138852814	rs76146588	C	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr9	138898893	rs4842070	C	G	2613.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	138899253	rs56162840	G	GCA	16525.73	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr9	138899276	rs71759303	TACAC	T	3623.73	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:176,102:0.37:278
chr9	138899301	rs56188305	GCA	G	4436.73	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:84,114:0.58:198
chr9	138899311	rs56102761	GCA	G	4426.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:81,110:0.58:191
chr9	138903671	rs9626	A	G	17318.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr9	138904997	rs2280485	T	C	2958.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:194,159:0.45:353
chr9	138905136	rs2280486	C	T	2641.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:183,129:0.41:312
chr9	138905214	rs2280487	C	G	848.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,36:0.42:85
chr9	138905884	rs11103273	T	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr9	138905907	rs72656977	T	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=12.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.435;SOR=3.742;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr9	138927108	rs183405924	C	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.31;QD=27.91;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	138927183	rs149084098	T	C	6699.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr9	139008803	rs3739466	T	G	1343.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:68,67:0.50:135
chr9	139010319	rs1717447	A	C	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr9	139089679	rs7860634	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr9	139089717	rs7850466	TA	GC	999.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;JOINED;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr9	139090465	rs3215774	T	TC	2503.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:186,137:0.42:323
chr9	139091797	rs1924521	A	C	2364.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:136,112:0.45:248
chr9	139092679	rs4842131	T	C	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:71,62:0.47:133
chr9	139094773	rs2274115	A	G	1087.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:102,61:0.37:163
chr9	139094805	rs2274116	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:129,81:0.39:210
chr9	139096898	rs10858245	T	G	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:132,71:0.35:203
chr9	139116666	rs78475959	G	A	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:97,55:0.36:152
chr9	139116907	rs28594424	T	G	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr9	139137626	rs79849109	C	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:90,125:0.58:215
chr9	139142710	rs62579871	G	A	4473.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	139142808	rs66470520	T	C	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr9	139143045	rs74400093	T	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr9	139221798	rs76115134	T	C	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.15;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	139221808	rs144733220	ACCCCCTC	A	2705.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr9	139222174	rs28495820	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr9	139222232	rs62579957	G	A	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	139222238	.	G	A	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=5.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.75;ReadPosRankSum=1.563;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr9	139222249	rs62579958	C	T	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.91;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr9	139230292	rs28447209	T	G	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr9	139230585	rs28583929	T	C	5398.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr9	139235415	rs60980157	C	T	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr9	139257411	rs10870202	T	C	13220.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr9	139258462	rs1135314	A	G	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr9	139261933	rs3812555	C	T	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	139266405	rs10781499	G	A	12500.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr9	139266496	rs4077515	C	T	8957.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr9	139271919	rs11791262	C	T	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	139272058	rs10781507	A	G	16321.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr9	139272502	rs3812565	T	C	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr9	139273402	rs3812567	C	T	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr9	139274523	rs11145793	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	139275204	rs3812570	A	C	12669.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr9	139275294	rs3812571	G	C	13926.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr9	139276680	rs3812573	C	T	6202.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	139277565	.	T	C	282.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr9	139277994	rs147271628	CGCT	C	14892.73	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr9	139279173	rs10781510	G	A	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	139281847	rs78428995	T	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr9	139289825	rs4266763	A	G	18763.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,732:1.00:732
chr9	139290011	rs11145874	G	A	6814.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	139290251	rs4498662	C	G	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr9	139298593	rs1051957	A	G	8006.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr9	139299673	rs3812578	G	C	10766.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr9	139300494	rs11145910	T	C	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	139300547	rs10781518	A	G	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	139301583	rs3087886	T	C	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	139302015	rs141528863	TAA	T	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.745;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr9	139302088	rs11145916	G	A	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139302094	rs4880155	C	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr9	139302200	rs11145917	C	T	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr9	139302526	rs11145919	G	T	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr9	139303269	rs10870139	G	A	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr9	139303290	rs4298601	G	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	139303301	rs4487900	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr9	139303635	rs11428506	C	CT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-0.668;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr9	139305007	rs4400498	C	T	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	139305024	rs4418446	G	A	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	139305041	rs4400499	C	T	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr9	139311471	rs3812581	C	T	2905.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr9	139312972	rs11145967	G	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:38,45:0.54:83
chr9	139312996	rs10870160	C	T	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	139316601	rs10870165	C	T	11786.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr9	139316744	rs11145974	C	T	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr9	139324029	rs35873563	C	T	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	139324737	rs33982662	C	A	8176.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr9	139325641	rs68002978	C	T	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr9	139326253	.	T	C	1603	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=22;MQ=58.23;NF=53;NR=22;PP=1603;QD=21.8369495006;SC=TCTCCCTCCATGCCCGCCCCC;SbPval=0.5;Source=Platypus;TC=76;TCF=54;TCR=22;TR=75;WE=139326261;WS=139326243;set=Platypus	GT:AD:AF:DP	1/1:1,75:0.99:76
chr9	139327034	rs10870194	A	G	9316.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr9	139327062	rs34936112	G	A	17181.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,385:1.00:385
chr9	139327062	.	GGA	AGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=24;MMLQ=24;MQ=60.0;NF=183;NR=156;PP=2947;QD=20;SC=AATGGGGTAGGGACCACAGGG;SbPval=0.53;Source=Platypus;TC=349;TCF=188;TCR=161;TR=339;WE=139327072;WS=139327052;set=Platypus	GT:AD:AF:DP	1/1:10,339:0.97:349
chr9	139327064	rs34302850	A	G	17181.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr9	139327143	rs35531907	C	T	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr9	139327154	rs34985258	C	T	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:2,165:0.99:167
chr9	139327277	rs34619169	G	A	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr9	139327439	rs10781542	A	G	15813.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr9	139327599	rs71269007	G	GCGCCCACCCCTCCAGCCA	16432.73	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:2,453:1.00:455
chr9	139328551	rs10870199	T	C	1783.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:137,95:0.41:232
chr9	139328722	rs7851507	G	T	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr9	139333049	rs5901103	GCCCT	G	3362.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr9	139340351	rs36066734	A	G	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	139341529	rs3841203	CA	C	5238.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:11,260:0.96:271
chr9	139341600	rs144265669	A	C	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr9	139341612	rs3812591	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr9	139350595	rs17610266	G	A	2830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=3.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=0.767;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:99,131:0.57:230
chr9	139354097	rs35857370	G	A	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	139357273	rs55824202	A	T	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr9	139357640	rs117984011	T	C	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chr9	139360354	rs3124590	A	G	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr9	139360448	rs199501843	G	A	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:181,100:0.36:281
chr9	139368953	rs3812594	G	A	7649.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	139369062	rs3812595	C	T	6669.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr9	139371342	rs11999525	G	A	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr9	139371405	rs11999532	G	C	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr9	139371786	rs6560632	A	C	13925.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr9	139372224	rs66477686	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr9	139378914	rs34376913	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr9	139391636	rs2229974	G	A	3822.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:209,187:0.47:396
chr9	139396408	rs3124594	A	G	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:238,216:0.48:454
chr9	139397426	rs11574905	G	A	7478.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:264,350:0.57:614
chr9	139397707	rs10521	G	A	4488.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:296,229:0.44:525
chr9	139400406	rs11145764	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	139400904	rs4880098	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	139401504	rs3124596	G	A	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr9	139402663	rs3124597	T	C	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr9	139402908	rs3812603	T	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr9	139403240	rs35987207	T	TG	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr9	139403268	rs3125000	T	C	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	139403554	rs3124598	T	C	3032.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	139405261	rs3125001	C	T	10237.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr9	139407452	rs3812608	C	T	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr9	139407932	rs2229971	A	G	7918.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:263,383:0.59:646
chr9	139408892	rs3812609	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:77,50:0.39:127
chr9	139410177	rs3124603	T	C	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr9	139410424	rs3125006	A	G	5710.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr9	139410589	rs4880099	A	G	7100.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	139410679	rs4880100	T	C	1198.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:21,47:0.69:68
chr9	139411714	rs11145767	T	C	3333.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:135,156:0.54:291
chr9	139411880	rs9411254	G	A	3197.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:181,156:0.46:337
chr9	139412197	rs9411208	G	A	5376.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:205,250:0.55:455
chr9	139417332	.	C	T	690.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr9	139418260	rs4489420	A	G	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:123,114:0.48:237
chr9	139440845	rs3013306	G	A	1305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.793;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=-1.243;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:38,37:0.49:75
chr9	139440852	rs3013307	A	G	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.64;ReadPosRankSum=-0.927;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:34,30:0.47:64
chr9	139564474	rs2297537	C	G	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr9	139565150	rs4636297	A	G	15547.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr9	139565479	.	TG	T	924.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.57;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr9	139565488	rs114709635	G	C	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.55;SOR=1.781;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr9	139566823	rs1051828	A	G	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	139569066	rs9411215	A	G	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr9	139572068	rs2236514	C	G	6357.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=3.121;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.71;ReadPosRankSum=-1.245;SOR=0.318;set=HC	GT:AD:AF:DP	1/1:1,237:1.00:238
chr9	139616742	rs945384	A	G	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr9	139616840	rs3739939	G	A	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:76,87:0.53:163
chr9	139617379	rs11793962	G	A	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:98,80:0.45:178
chr9	139617626	rs7038042	G	A	6236.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:325,299:0.48:624
chr9	139617662	rs11849	T	C	5206.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:280,243:0.46:523
chr9	139618283	rs6873	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr9	139620695	rs2275161	C	T	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:64,64:0.50:128
chr9	139621120	rs10781513	A	G	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:56,28:0.33:84
chr9	139621168	rs2275160	G	A	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:64,115:0.64:179
chr9	139639532	rs145717467	CGGCCCACGCACCACACAGCTCCCAACGTGGGCCCCGAGT	C	11094.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.97;QD=44.92;SOR=1.698;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr9	139639605	rs117572243	C	T	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:274,215:0.44:489
chr9	139642106	.	A	C	2450	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=27;MQ=60.77;NF=11;NR=23;PP=2450;QD=73.0815062514;SC=CAGCCTCCAAACCTCCAGCCT;SbPval=0.67;Source=Platypus;TC=108;TCF=38;TCR=70;TR=34;WE=139642124;WS=139642096;set=Platypus	GT:AD:AF:DP	0/1:74,34:0.31:108
chr9	139642961	rs2811728	G	A	7053.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:238,328:0.58:566
chr9	139649580	rs879467	G	A	5851.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr9	139650060	rs2784068	C	A	14206.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr9	139650167	.	G	GAACAGCATGGGGAACAGTGCAGGGAACCCTGCAGGGAACAGCATGGGGAACGGTGCAGGA	6330.73	.	AC=2;AF=1.00;AN=2;DP=811;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=791.34;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:6,2:0.25:8
chr9	139650595	rs35874639	T	G	36586.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.783;ClippingRankSum=0.000;DB;DP=1313;ExcessHet=3.0103;FS=3.450;MLEAC=2;MLEAF=1.000;MQ=59.61;MQRankSum=-0.547;QD=36.08;ReadPosRankSum=13.505;SOR=0.471;set=HC	GT:AD:AF:DP	1/1:172,842:0.83:1014
chr9	139650619	rs35341952	A	G	38539.77	.	AC=2;AF=1.00;AN=2;DB;DP=1824;set=Intersection	GT:AD:AF:DP	1/1:171,928:0.84:1099
chr9	139651163	rs57411373	A	AG	1704.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr9	139652338	rs9411272	C	G	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr9	139653055	rs11145867	C	T	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr9	139656618	rs2484658	T	C	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.13;SOR=4.571;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr9	139656670	rs2297722	T	C	5766.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	139656706	rs2297723	A	C	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr9	139657834	rs9987876	G	C	7990.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr9	139658051	rs4880070	G	T	2057.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr9	139658576	rs4880140	G	C	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr9	139690738	rs2784034	C	G	1043.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.58;ReadPosRankSum=-1.918;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:58,51:0.47:109
chr9	139690840	rs1055995	G	A	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	139699964	rs2811793	T	C	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	139700605	rs2811795	T	C	7438.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr9	139701108	rs2254143	A	C	16777.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr9	139701983	rs3739944	C	G	4672.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr9	139702908	rs7864908	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr9	139726239	rs2811748	A	G	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr9	139730129	rs2811744	T	C	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr9	139731969	rs2811742	C	T	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr9	139732331	rs2811741	G	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr9	139739643	rs10870132	T	C	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr9	139744807	rs872463	A	G	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	139746992	rs10123375	G	A	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr9	139749067	rs7869864	C	T	13818.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr9	139752899	rs2275156	T	G	26173.77	.	AC=2;AF=1.00;AN=2;DB;DP=980;set=Intersection	GT:AD:AF:DP	1/1:0,978:1.00:978
chr9	139760830	rs76229681	CG	C	6428.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr9	139804274	rs4567138	G	A	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr9	139804346	rs4448378	C	T	10830.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr9	139815053	rs10781522	G	A	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	139818169	rs17250631	CTT	C	2060.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr9	139820421	rs7852970	G	A	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr9	139836362	rs7040705	G	A	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr9	139837700	rs11339872	AC	A	594.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.78;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr9	139837990	rs2271872	G	C	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	139839904	rs2071006	T	G	15538.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.299;ClippingRankSum=0.000;DB;DP=600;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-0.974;SOR=0.235;set=HC	GT:AD:AF:DP	1/1:1,599:1.00:600
chr9	139840471	rs7862602	G	T	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr9	139840543	rs7850844	A	G	14201.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr9	139840859	rs908830	T	C	27160.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	1/1:0,993:1.00:993
chr9	139847570	rs884218	T	C	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr9	139848273	rs2271869	A	G	18879.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,430:1.00:430
chr9	139848278	rs2271868	T	C	18682.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.35;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr9	139848688	rs4880175	C	T	13911.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,530:1.00:530
chr9	139866117	.	C	A	4264.77	.	AC=1;AF=0.500;AN=2;DP=358;set=Intersection	GT:AD:AF:DP	0/1:154,202:0.57:356
chr9	139872048	rs4880179	A	G	7028.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr9	139875318	rs146717258	C	CCATT	3938.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:3,92:0.97:95
chr9	139877698	rs968516	A	C	28811.77	.	AC=2;AF=1.00;AN=2;DB;DP=1102;set=Intersection	GT:AD:AF:DP	1/1:0,1101:1.00:1101
chr9	139878826	.	T	A	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=4.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.222;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:59,60:0.50:119
chr9	139878828	rs4880082	T	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr9	139879067	rs2049042	T	C	5263.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr9	139879113	rs2049041	G	A	9397.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr9	139887042	rs10870159	G	C	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr9	139887803	rs141325653	G	C	3263.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:225,162:0.42:387
chr9	139902214	rs10870161	A	G	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	139902712	rs4880185	A	G	19234.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,719:1.00:719
chr9	139902786	rs4880186	G	C	34899.77	.	AC=2;AF=1.00;AN=2;DB;DP=811;set=Intersection	GT:AD:AF:DP	1/1:0,808:1.00:808
chr9	139902797	rs4880187	C	G	34036.77	.	AC=2;AF=1.00;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr9	139903352	rs59031144	G	GC	12489.73	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:4,410:0.99:414
chr9	139904037	rs7048567	A	G	21918.77	.	AC=2;AF=1.00;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	1/1:0,827:1.00:827
chr9	139906359	rs2271862	G	A	17864.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr9	139906513	rs2271863	T	C	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr9	139906686	rs45540434	G	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr9	139907842	rs4880188	T	C	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	139908139	rs10870162	A	G	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr9	139908265	rs10781531	T	C	8500.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr9	139910648	rs6560657	T	C	14998.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr9	139912178	rs879854	G	A	11792.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr9	139912484	rs908832	A	G	23847.77	.	AC=2;AF=1.00;AN=2;DB;DP=905;set=Intersection	GT:AD:AF:DP	1/1:0,903:1.00:903
chr9	139913239	rs908828	T	G	10028.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr9	139916471	rs142576618	A	ATGGCTCAGATGGGGGTG	5736.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.69;QD=42.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr9	139923265	rs4880189	A	G	8727.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr9	139926402	rs7469569	T	C	29738.77	.	AC=2;AF=1.00;AN=2;DB;DP=1121;set=Intersection	GT:AD:AF:DP	1/1:0,1118:1.00:1118
chr9	139932419	.	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.179;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.858;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr9	139937795	rs10781535	T	C	22574.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=1.020;set=HC	GT:AD:AF:DP	1/1:0,511:1.00:511
chr9	139937799	rs10781536	G	A	22439.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr9	139943429	rs7873815	G	A	11719.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr9	139943549	rs7390981	G	A	13679.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr9	139944496	rs10870169	T	C	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr9	139944509	rs10735661	T	C	5586.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=3.082;MLEAC=2;MLEAF=1.000;MQ=59.57;MQRankSum=4.298;QD=45.79;ReadPosRankSum=1.323;SOR=0.302;set=HC	GT:AD:AF:DP	1/1:1,121:0.99:122
chr9	139944548	rs12555382	T	C	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:21,63:0.75:84
chr9	139944689	.	T	C	1989	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=3;HapScore=1;MGOF=25;MMLQ=22;MQ=41.04;NF=82;NR=49;PP=1989;QD=15.4486352103;SC=CACCCGCCTGTCCCTACCCAC;SbPval=0.74;Source=Platypus;TC=184;TCF=107;TCR=77;TR=131;WE=139944697;WS=139944679;set=Platypus	GT:AD:AF:DP	1/0:53,131:0.71:184
chr9	139945051	rs7869520	A	G	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr9	139946804	rs2271867	C	G	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.79;SOR=1.976;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr9	139946905	rs34679600	C	CA	2934.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr9	139946916	rs11145979	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	139960178	rs2176674	A	G	15739.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr9	139960894	rs72763246	C	T	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr9	139972900	rs10870176	T	C	36284.77	.	AC=2;AF=1.00;AN=2;DB;DP=1320;set=Intersection	GT:AD:AF:DP	1/1:1,1315:1.00:1316
chr9	139973186	rs7390974	T	C	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	139973629	rs7390710	A	C	16592.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr9	139973652	rs7390711	A	G	15824.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr9	139975108	rs9314874	T	C	12712.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr9	139977195	rs4390039	T	C	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr9	139981241	rs968732	GT	CG	6839.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr9	139981627	rs968733	A	G	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr9	139990906	rs4880199	T	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr9	139994102	rs4880200	G	A	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	139995361	rs11425109	C	CA	3113.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr9	139996195	rs4880203	G	C	4907.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:120,201:0.63:321
chr9	139996376	rs72382842	TACAC	T	55367.73	.	AC=2;AF=1.00;AN=2;DB;DP=1308;set=Intersection	GT:AD:AF:DP	1/1:0,1238:1.00:1238
chr9	139996653	.	ACG	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=1;MGOF=56;MMLQ=23;MQ=52.04;NF=53;NR=248;PP=2962;QD=20;SC=GTGGTGTTACACGTGCTGTTG;SbPval=0.04;Source=Platypus;TC=628;TCF=74;TCR=554;TR=301;WE=139996676;WS=139996643;set=Platypus	GT:AD:AF:DP	0/1:327,301:0.48:628
chr9	139996691	.	ACATT	A	2968	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=2;HapScore=1;MGOF=39;MMLQ=24;MQ=50.57;NF=128;NR=390;PP=2968;QD=20;SC=GGTGGTACACACATTCATGCT;SbPval=0.11;Source=Platypus;TC=729;TCF=139;TCR=590;TR=518;WE=139996747;WS=139996675;set=Platypus	GT:AD:AF:DP	0/1:211,518:0.71:729
chr9	139996735	.	A	G	5314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DP=514;ExcessHet=3.0103;FS=4.267;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.056;QD=10.76;ReadPosRankSum=12.217;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:315,179:0.36:494
chr9	139996739	rs148862659	A	ACG	5197.73	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:320,179:0.36:499
chr9	139996749	rs11145991	G	A	4350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-0.382;QD=7.95;ReadPosRankSum=-8.232;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:416,131:0.24:547
chr9	139996768	.	T	TAC	2964	.	AC=1;AF=0.500;AN=2;BRF=0.49;FR=0.5000;HP=1;HapScore=1;MGOF=60;MMLQ=23;MQ=51.21;NF=51;NR=253;PP=2964;QD=20;SC=TCGGTGGTGTTACACATTCAC;SbPval=0.97;Source=Platypus;TC=869;TCF=226;TCR=643;TR=304;WE=139996786;WS=139996754;set=Platypus	GT:AD:AF:DP	1/0:565,304:0.35:869
chr9	139996933	rs10118812	T	G	43603.77	.	AC=2;AF=1.00;AN=2;DB;DP=1596;set=Intersection	GT:AD:AF:DP	1/1:1,1592:1.00:1593
chr9	139997001	rs72108373	TACAC	T	33876.73	.	AC=2;AF=1.00;AN=2;DB;DP=1554;set=Intersection	GT:AD:AF:DP	1/1:11,1309:0.99:1320
chr9	139997244	.	ACATT	A	2968	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=2;HapScore=1;MGOF=73;MMLQ=23;MQ=44.0;NF=474;NR=1157;PP=2968;QD=20;SC=GGTGTTACACACATTCATGCT;SbPval=0.22;Source=Platypus;TC=2861;TCF=722;TCR=2139;TR=1631;WE=139997259;WS=139997183;set=Platypus	GT:AD:AF:DP	0/1:1230,1631:0.57:2861
chr9	139997281	.	TACAC	T	2968	.	AC=1;AF=0.500;AN=2;BRF=0.56;FR=0.5000;HP=1;HapScore=1;MGOF=75;MMLQ=24;MQ=42.32;NF=318;NR=1362;PP=2968;QD=20;SC=TCGGTGGTGTTACACACATTC;SbPval=0.49;Source=Platypus;TC=2858;TCF=541;TCR=2317;TR=1680;WE=139997304;WS=139997262;set=Platypus	GT:AD:AF:DP	0/1:1178,1680:0.59:2858
chr9	139997293	rs142818580	C	T	60693.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=1678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=28.651;QD=37.17;ReadPosRankSum=2.024;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:165,1468:0.90:1633
chr9	139997294	rs62584555	A	G	62502.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=7.680;ClippingRankSum=0.000;DB;DP=1694;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.22;MQRankSum=26.891;QD=37.74;ReadPosRankSum=-1.401;SOR=0.601;set=HC	GT:AD:AF:DP	1/1:133,1523:0.92:1656
chr9	139997295	.	C	G	60693.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.915;ClippingRankSum=0.000;DP=1731;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=31.555;QD=36.00;ReadPosRankSum=7.041;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:219,1467:0.87:1686
chr9	139997563	.	A	ACATT	2968	.	AC=1;AF=0.500;AN=2;BRF=0.52;FR=0.5000;HP=2;HapScore=1;MGOF=53;MMLQ=28;MQ=44.51;NF=124;NR=688;PP=2968;QD=20;SC=GGTGTTACACACATGCTGTTG;SbPval=0.68;Source=Platypus;TC=1920;TCF=328;TCR=1592;TR=812;WE=139997574;WS=139997548;set=Platypus	GT:AD:AF:DP	0/1:1108,812:0.42:1920
chr9	139997591	.	GGT	G	2966	.	AC=1;AF=0.500;AN=2;BRF=0.51;FR=0.5000;HP=1;HapScore=1;MGOF=51;MMLQ=23;MQ=44.14;NF=114;NR=578;PP=2966;QD=20;SC=GCAGGTCGGTGGTGTTACATT;SbPval=0.7;Source=Platypus;TC=1792;TCF=334;TCR=1458;TR=692;WE=139997615;WS=139997581;set=Platypus	GT:AD:AF:DP	0/1:1100,692:0.39:1792
chr9	139997719	rs111877141	A	G	35468.77	.	AC=2;AF=1.00;AN=2;DB;DP=1410;set=Intersection	GT:AD:AF:DP	1/1:3,1386:1.00:1389
chr9	140001341	rs5901117	G	GAAC	4123.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr9	140001978	rs12115325	C	A	14525.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr9	140002187	rs12000517	C	T	7882.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr9	140002220	rs10117795	A	G	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr9	140002261	rs11790092	A	G	6567.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr9	140002501	rs6420280	T	C	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr9	140002754	rs4880090	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr9	140002989	rs4880091	T	C	14536.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr9	140003427	rs4567	A	G	3003.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:94,134:0.59:228
chr9	140006425	rs10747048	C	G	12859.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr9	140006491	rs10870180	C	T	12510.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr9	140008564	.	G	A	1107.78	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:7,51:0.88:58
chr9	140008625	.	CCCCCGCCCGCGACCCCGCCCGGCACCCACGTGCCCCGCGA	C	3773.73	.	AC=2;AF=1.00;AN=2;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr9	140008750	rs10747049	G	C	9671.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.08;QD=31.20;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr9	140008934	rs11145999	A	G	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr9	140040156	rs10870196	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:200,85:0.30:285
chr9	140055876	rs10747050	G	A	2383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.575;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:292,139:0.32:431
chr9	140064219	rs12000091	T	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.938;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:89,39:0.30:128
chr9	140080910	rs148147354	GCA	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.80;ReadPosRankSum=-0.305;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr9	140083107	.	G	C	2798.77	.	AC=1;AF=0.500;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	0/1:54,112:0.67:166
chr9	140100224	rs7032361	A	G	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:120,176:0.59:296
chr9	140108915	rs149701237	CTG	C	1826.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.802;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.618;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.404;QD=8.30;ReadPosRankSum=-0.723;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:163,57:0.26:220
chr9	140108969	rs77926343	C	T	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:32,105:0.77:137
chr9	140109477	rs55980756	T	C	8889.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:208,406:0.66:614
chr9	140110274	rs7390663	T	C	9765.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr9	140120396	rs6606566	C	T	8864.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr9	140123132	rs6606565	C	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:77,36:0.32:113
chr9	140126924	rs72763302	C	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr9	140128085	rs28407527	T	C	13316.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr9	140130606	rs28542318	A	T	10311.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr9	140139757	rs9775264	G	A	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr9	140142299	rs9330201	C	T	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr9	140147094	rs71387813	C	CCT	17317.73	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr9	140147152	rs28376526	C	G	15568.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=25.90;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,601:1.00:601
chr9	140148051	rs28631372	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr9	140157429	rs13294457	G	A	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr9	140157460	rs13296455	T	C	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr9	140157701	rs56368095	C	T	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr9	140158650	rs9695897	C	T	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr9	140158871	rs13295537	T	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr9	140160275	.	G	A	5296.77	.	AC=1;AF=0.500;AN=2;DP=356;set=Intersection	GT:AD:AF:DP	0/1:117,239:0.67:356
chr9	140161334	rs9330192	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr9	140161631	.	TGTGGGGCTGAG	T	2990	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=23;MQ=60.1;NF=7;NR=39;PP=2990;QD=20;SC=CAGGGGTCGGTGTGGGGCTGA;Source=Platypus;TCR=55;TR=46;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:20,46:0.70:66
chr9	140161634	.	GGGGCT	G	6344.73	.	AC=2;AF=1.00;AN=2;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=42.02;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	140161641	.	AGGTGGG	A	6345.73	.	AC=2;AF=1.00;AN=2;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=42.02;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr9	140161647	.	G	A	2015	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=3;HapScore=1;MGOF=0;MMLQ=25;MQ=60.13;NF=58;NR=44;PP=2015;QD=20.0957962014;SC=GCTGAGGTGGGGCTGAGGTGG;SbPval=0.75;Source=Platypus;TC=130;TCF=67;TCR=63;TR=102;WE=140161655;WS=140161621;set=Platypus	GT:AD:AF:DP	1/1:28,102:0.78:130
chr9	140161871	rs9802270	C	T	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr9	140161909	rs9802698	G	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr9	140167022	rs3204123	G	A	7074.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr9	140202194	rs13288421	T	C	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=3.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-1.434;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:93,70:0.43:163
chr9	140218025	.	C	T	741	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=23;MQ=58.78;NF=38;NR=17;PP=741;QD=14.1049311372;SC=GAGGGATGCTCTGCCGACACC;SbPval=0.29;Source=Platypus;TC=120;TCF=89;TCR=31;TR=55;WE=140218033;WS=140218015;set=Platypus	GT:AD:AF:DP	0/1:65,55:0.46:120
chr9	140218025	.	C	CTGCCGACACCTCACCCCGGACCACGAGGGATGCTT	1828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=8.776;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-3.141;QD=21.51;ReadPosRankSum=-6.179;SOR=2.017;set=HC	GT:AD:AF:DP	0/1:60,25:0.29:85
chr9	140242726	rs58941960	C	T	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:98,91:0.48:189
chr9	140243844	rs28545754	C	T	6985.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:276,335:0.55:611
chr9	140243968	rs79140116	C	T	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:125,110:0.47:235
chr9	140246050	rs11534416	T	G	5997.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr9	140247143	rs7020732	T	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr9	140248764	rs148581131	G	A	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:179,205:0.53:384
chr9	140249114	rs140079756	C	T	7134.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:305,343:0.53:648
chr9	140249253	rs11537108	A	C	3894.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.77;SOR=1.877;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr9	140249253	.	AG	CA,CG	789	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=3;MMLQ=28;MQ=60.0;NF=13,33;NR=35,67;PP=789,752;QD=17.5514140596;SC=CTCAGCACTGAGGGCTCAGGG;SbPval=0.77;Source=Platypus;TC=101;TCF=33;TCR=68;TR=48,100;WE=140249262;WS=140249243;set=Platypus	GT:AF:DP	0/1:0.48:101
chr9	140249254	rs11562624	G	A	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.569;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=5.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.23;ReadPosRankSum=0.397;SOR=1.217;set=HC	GT:AD:AF:DP	0/1:56,53:0.49:109
chr9	140250633	rs13293922	G	A	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr9	140250818	rs7389423	C	T	7754.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr9	140262218	rs11533157	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr9	140262426	rs11533158	C	T	8715.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr9	140267650	rs28688091	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr9	140268129	rs34481427	GTTT	G	6018.73	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:123,153:0.55:276
chr9	140268183	rs6606585	T	C	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr9	140277826	rs13291830	C	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:107,125:0.54:232
chr9	140289696	rs9695232	A	C	1909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.973;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=8.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.32;ReadPosRankSum=-3.541;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:91,94:0.51:185
chr9	140317979	rs117554356	G	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.12;ReadPosRankSum=-1.298;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:61,51:0.46:112
chr9	140320617	rs9414734	C	T	2948.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:234,152:0.39:386
chr9	140322645	rs35406628	G	A	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr9	140327663	rs34155071	C	T	2898.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:106,138:0.57:244
chr9	140329618	rs28589413	A	G	7168.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:415,351:0.46:766
chr9	140330976	rs13297080	T	C	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr9	140331833	rs9414731	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr9	140332478	rs6606582	A	G	25451.77	.	AC=2;AF=1.00;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	1/1:0,981:1.00:981
chr9	140344204	rs41309970	C	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr9	140348401	rs9410194	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr9	140356374	rs4962240	C	A	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:106,71:0.40:177
chr9	140356422	rs28452008	G	C	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:122,159:0.57:281
chr9	140356503	rs41307436	C	A	4945.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:302,252:0.45:554
chr9	140357972	rs1891627	A	G	11614.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr9	140374861	rs1891630	A	G	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr9	140392494	rs4962232	T	C	6998.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr9	140395071	rs150073246	G	A	680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=7.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.350;SOR=0.112;set=HC	GT:AD:AF:DP	0/1:30,37:0.55:67
chr9	140400275	rs3750381	T	C	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:131,87:0.40:218
chr9	140409726	rs843967	T	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr9	140437392	rs3737320	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,27:0.61:44
chr9	140441177	rs2254149	A	G	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr9	140441206	rs1615822	A	G	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:52,34:0.40:86
chr9	140449582	rs10110	A	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr9	140450159	rs1105221	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:132,125:0.49:257
chr9	140459724	.	G	T	353	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=4;HapScore=2;MGOF=17;MMLQ=27;MQ=57.21;NF=6;NR=16;PP=353;QD=17.6259642067;SC=GAAGCTCCCCGGGGTGACTCT;SbPval=0.61;Source=Platypus;TC=35;TCF=10;TCR=25;TR=22;WE=140459732;WS=140459714;set=Platypus	GT:AD:AF:DP	0/1:13,22:0.63:35
chr9	140459760	.	A	ACT	420	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=28;MQ=53.59;NF=0;NR=14;PP=420;QD=32.1428571429;SC=CCCCTGGGTGACTGTCTGTGA;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=14;WE=140459768;WS=140459750;set=Platypus	GT:AD:AF:DP	1/0:1,14:0.93:15
chr9	140477249	rs2094623	G	A	2897.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:111,134:0.55:245
chr9	140483076	rs2259657	G	A	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr9	140483339	rs2297004	G	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr9	140507480	rs62622789	C	T	7994.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:231,365:0.61:596
chr9	140605334	rs7039441	T	C	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:107,115:0.52:222
chr9	140611672	rs72766927	A	G	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr9	140637804	rs34385417	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.575;QD=3.10;ReadPosRankSum=0.278;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:55,41:0.43:96
chr9	140705796	rs11789631	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr9	140706127	rs11789684	G	A	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr9	140708768	rs7851955	T	G	11094.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr9	140711875	rs112664025	ACT	A	7894.73	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:191,215:0.53:406
chr9	140732737	rs73581197	G	T	1549.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:90,71:0.44:161
chr9	140740856	.	A	C	519	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=4;HapScore=2;MGOF=19;MMLQ=23;MQ=54.35;NF=20;NR=10;PP=519;QD=18.4590404182;SC=CTGTGCGCGCACCCACTGGAG;SbPval=0.33;Source=Platypus;TC=72;TCF=52;TCR=20;TR=30;WE=140740864;WS=140740846;set=Platypus	GT:AD:AF:DP	0/1:42,30:0.42:72
chr9	140740886	.	A	T	801	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=23;MQ=58.85;NF=38;NR=26;PP=801;QD=13.058925196;SC=TCCCCCAGGAATCCTCCTAAG;SbPval=0.43;Source=Platypus;TC=128;TCF=79;TCR=49;TR=64;WE=140740894;WS=140740876;set=Platypus	GT:AD:AF:DP	0/1:64,64:0.50:128
chr9	140741052	rs116861535	C	G	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:152,86:0.36:238
chr9	140777306	rs4422842	C	G	6067.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:350,288:0.45:638
chr9	140777370	rs1110146	A	C	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:68,177:0.72:245
chr9	140786918	rs4076712	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr9	140865989	rs2229951	A	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:133,111:0.45:244
chr9	141008876	rs2229948	C	T	7266.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,277:1.00:277
chr9	141009015	rs4876928	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr9	141015019	rs2278971	G	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr9	141015351	rs2278972	A	G	3886.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:283,200:0.41:483
chr9	141015869	.	CT	C	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=-0.392;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:68,84:0.55:152
chr9	141016262	rs2278973	T	G	14646.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr9	141069844	rs62581042	T	C	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:151,103:0.41:254
chr9	141069885	rs62581043	A	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=2.379;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=0.263;QD=1.42;ReadPosRankSum=-2.290;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:410,88:0.18:498
chr9	141069927	.	C	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=45;MMLQ=22;MQ=54.1;NF=135;NR=166;PP=2962;QD=20;SC=GCCAGCGGTGCGACCCCCGTC;SbPval=0.69;Source=Platypus;TC=704;TCF=343;TCR=361;TR=301;WE=141069935;WS=141069917;set=Platypus	GT:AD:AF:DP	1/0:403,301:0.43:704
chr9	141069952	rs9410185	T	C	24305.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,643:1.00:643
chr9	141069977	.	G	GAGA	3992.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DP=597;ExcessHet=3.0103;FS=18.658;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=4.888;QD=9.98;ReadPosRankSum=-2.624;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:261,139:0.35:400
chr9	141069978	.	C	A	2350	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=2;HapScore=1;MGOF=44;MMLQ=23;MQ=54.61;NF=81;NR=107;PP=2350;QD=12.6849532582;SC=GCCAGCGGTGCGACCCCCGTC;SbPval=0.57;Source=Platypus;TC=576;TCF=251;TCR=325;TR=188;WE=141069986;WS=141069968;set=Platypus	GT:AD:AF:DP	1/0:388,188:0.33:576
chr9	141069978	.	C	CCCCCGTCCTTCTCCCACCCAACGTGTACCACCACGAGGCCAGCGGTGA	3991.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DP=580;ExcessHet=3.0103;FS=20.580;MLEAC=1;MLEAF=0.500;MQ=56.66;MQRankSum=4.698;QD=10.16;ReadPosRankSum=-8.817;SOR=0.274;set=HC	GT:AD:AF:DP	0/1:262,131:0.33:393
chr9	141069993	rs200245769	C	T	1653.73	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:221,115:0.34:336
chr9	141070013	.	C	CGCG	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DP=315;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=53.40;MQRankSum=1.400;QD=2.15;ReadPosRankSum=1.986;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:247,33:0.12:280
chr9	141070125	rs10867114	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr9	141070159	.	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=7.005;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-5.285;QD=0.82;ReadPosRankSum=-3.527;SOR=1.776;set=HC	GT:AD:AF:DP	0/1:111,10:0.08:121
chr9	141070161	.	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=7.058;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-4.951;QD=1.02;ReadPosRankSum=-3.887;SOR=1.908;set=HC	GT:AD:AF:DP	0/1:108,11:0.09:119
chr9	141070163	.	G	C	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=6.200;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-5.322;QD=1.03;ReadPosRankSum=-3.811;SOR=1.618;set=HC	GT:AD:AF:DP	0/1:114,13:0.10:127
chr9	141070181	.	A	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DP=211;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=2.450;QD=1.10;ReadPosRankSum=-4.086;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:179,32:0.15:211
chr9	141070283	rs7868693	T	C	6911.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:213,335:0.61:548
chr9	141070317	rs181436611	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=51.97;MQRankSum=8.082;QD=0.23;ReadPosRankSum=-0.767;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:373,55:0.13:428
chr9	141070335	rs7868705	T	G	10547.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr9	141070347	rs189844666	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.24;MQRankSum=-3.713;QD=2.59;ReadPosRankSum=-0.479;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:213,58:0.21:271
chr9	141070424	.	C	T	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=4.953;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-4.042;QD=3.93;ReadPosRankSum=-1.656;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr9	141071738	rs199786532	GC	G	461.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-5.577;QD=4.02;ReadPosRankSum=1.654;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:93,22:0.19:115
chr9	141071755	rs2507130	T	G	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:64,36:0.36:100
chr10	95074	rs6560828	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr10	95096	rs11251929	A	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr10	95226	rs6560829	A	T	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.45;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	95229	rs6560830	C	T	5022.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=44.85;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	95248	rs56184415	C	G	2374.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.76;QD=26.39;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	95261	rs113214939	T	C	1029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.628;QD=13.20;ReadPosRankSum=-0.159;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:31,47:0.60:78
chr10	282897	rs4600135	C	T	6568.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	285200	rs7919436	T	G	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	285479	rs10655220	G	GTGTT,GTGTTT	7228.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.71;QD=34.10;SOR=1.597;set=HC	GT:AD:AF:DP	1/2:0,87,125:0.41,0.59:212
chr10	288184	rs34123561	G	GAA	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.761;QD=4.77;ReadPosRankSum=-0.906;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:60,43:0.42:103
chr10	292927	rs2303990	C	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	294165	rs10903752	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	294953	rs1017361	A	G	8038.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr10	329182	rs66861796	TG	T	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.77;ReadPosRankSum=-0.088;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:31,26:0.46:57
chr10	329188	rs45445697	G	T	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=2.532;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.065;QD=18.56;ReadPosRankSum=1.282;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr10	329191	rs371065533	GC	G	1141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.832;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.493;QD=17.84;ReadPosRankSum=1.162;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:33,31:0.48:64
chr10	370977	rs3123241	A	G	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	375570	rs3832678	GGGAGCTCAGCAAGGCT	G	3991.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr10	387060	rs7904155	G	A	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	394714	rs4880610	G	A	9052.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	395266	rs4880611	T	C	9652.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr10	395463	rs4242754	G	A	8627.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr10	404023	rs180830620	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:60,39:0.39:99
chr10	410825	rs10795053	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	412449	rs1133113	A	G	6674.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	428503	rs4881200	A	G	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	429903	rs11289740	GA	G	356.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.971;QD=8.49;ReadPosRankSum=1.555;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr10	436848	rs10904093	A	G	4568.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	444997	rs6560836	C	T	4295.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:260,221:0.46:481
chr10	445061	rs6560837	C	T	15008.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr10	459940	rs4881274	G	A	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:174,106:0.38:280
chr10	461912	rs66682704	TC	T	606.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr10	468748	rs4881290	C	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	518547	rs10610683	ACT	A	5159.73	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:177,137:0.44:314
chr10	530644	rs1539231	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr10	687569	rs1631975	C	T	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	696237	rs10904535	G	A	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:7,440:0.98:447
chr10	707911	rs41289273	G	A	3852.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:162,170:0.51:332
chr10	708192	rs3853289	A	G	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	859270	rs3763722	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	1018585	rs4880745	T	G	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:223,184:0.45:407
chr10	1034228	rs12777788	G	A	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	1034412	rs12772979	C	T	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:152,164:0.52:316
chr10	1038339	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-1.751;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	1042023	rs10665098	A	AAAC	6648.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	1043058	rs1250887	T	C	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	1044809	rs11253559	T	C	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:93,102:0.52:195
chr10	1046712	rs2306409	G	A	3697.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:239,181:0.43:420
chr10	1054276	rs10904595	T	C	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	1054444	rs11253567	A	G	4432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-1.335;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:202,222:0.52:424
chr10	1055055	rs12356612	C	T	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr10	1061625	.	GCTGAGCA	G	2971	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=53;MMLQ=23;MQ=57.08;NF=31;NR=21;PP=2971;QD=20;SC=GGTCCTGAGCGCTGAGCACTG;SbPval=0.31;Source=Platypus;TC=63;TCF=41;TCR=22;TR=52;WE=1061639;WS=1061615;set=Platypus	GT:AD:AF:DP	1/1:11,52:0.83:63
chr10	1065406	rs41260144	G	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr10	1068802	rs3750729	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:63,62:0.50:125
chr10	1070461	rs3793777	C	T	505.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr10	1081944	rs11396609	G	GT	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=2.415;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.44;ReadPosRankSum=1.178;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:230,49:0.18:279
chr10	1087551	rs12768746	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr10	1088746	rs7075188	T	G	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chr10	1089616	rs11250238	T	C	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	1093992	rs4880759	A	G	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	1120547	rs41313808	G	A	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,58:0.50:115
chr10	1142208	rs10794716	T	C	8273.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,323:1.00:323
chr10	1230968	rs2271275	C	T	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	1245893	rs1983028	A	C	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	1263076	rs3750677	C	T	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	1279598	rs67687625	G	A	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	1313102	rs191142983	C	T	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:94,109:0.54:203
chr10	1406228	rs11250463	T	C	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr10	1421516	rs10794748	A	G	4343.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:229,216:0.49:445
chr10	1779349	rs3750684	G	A	5726.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:295,280:0.49:575
chr10	3124516	rs4881074	G	A	6531.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:1,242:1.00:243
chr10	3143054	rs71294492	CAAAA	C,CAAAAA	1659.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.601;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.423;QD=17.66;ReadPosRankSum=-0.986;SOR=0.403;set=HC	GT:AD:AF:DP	1/2:16,55,23:0.59,0.24:94
chr10	3143283	rs55882340	T	A	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr10	3143643	rs4881080	A	C	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	3145885	rs10903966	T	C	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	3145906	rs11251719	A	C	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	3147096	rs4424569	C	G	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=3.804;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	3147099	rs4469783	G	A	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	3147192	rs4256893	G	A	9887.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr10	3147456	rs4271292	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	3149402	rs10903967	A	G	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	3150898	rs11251721	C	T	4963.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:260,249:0.49:509
chr10	3150973	rs1132173	C	T	2947.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:172,147:0.46:319
chr10	3155173	rs7896691	C	T	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	3155217	rs6602023	T	C	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	3155237	rs6602024	A	G	10304.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr10	3155263	rs7906901	T	C	14154.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:2,530:1.00:532
chr10	3155408	rs3816700	C	T	11686.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr10	3155428	rs3816701	C	T	10389.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr10	3155540	rs4881085	A	G	16875.77	.	AC=2;AF=1.00;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr10	3155620	rs1052309	A	G	13826.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:2,534:1.00:536
chr10	3155753	rs4881087	G	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	3158848	rs7086902	C	T	2138.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	3160904	rs3829911	C	T	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	3160917	rs3829913	T	C	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	3161131	rs3829914	C	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	3162033	rs6602025	T	C	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	3167463	rs2306309	T	C	8478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.033;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.477;QD=18.08;ReadPosRankSum=-0.379;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:244,225:0.48:469
chr10	3167463	.	TCA	CCG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=1;MGOF=5;MMLQ=22;MQ=60.04;NF=88;NR=105;PP=2944;QD=20;SC=CCGTTTCCTCTCATTGCTTTT;SbPval=0.55;Source=Platypus;TC=433;TCF=200;TCR=233;TR=193;WE=3167477;WS=3167453;set=Platypus	GT:AD:AF:DP	1/0:240,193:0.45:433
chr10	3167465	rs3816703	A	G	8478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.502;QD=18.59;ReadPosRankSum=0.296;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:241,215:0.47:456
chr10	3167527	rs142773253	ATTC	A	2822.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:80,75:0.48:155
chr10	3171995	rs2279211	G	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr10	3172121	rs1052333	C	T	4723.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:256,231:0.47:487
chr10	3172229	rs4598574	G	A	3574.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:193,174:0.47:367
chr10	3172267	rs4381274	A	G	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:131,124:0.49:255
chr10	3172299	rs4390256	T	C	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:80,86:0.52:166
chr10	3175541	rs3740613	C	A	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.281;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:56,52:0.48:108
chr10	3178815	rs9063	G	C	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:89,91:0.51:180
chr10	3178881	rs1053000	C	T	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr10	3178905	rs7673	T	A	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.84;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	3178905	.	TGCT	AGCC,AGCT	342	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.04;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=26;MQ=60.0;NF=1,3;NR=12,29;PP=199,342;QD=19.4206057586;SC=CTGCCCCACCTGCTCCAGTGC;SbPval=0.71;Source=Platypus;TC=32;TCF=3;TCR=29;TR=13,32;WE=3178916;WS=3178895;set=Platypus	GT:AF:DP	0/1:0.41:32
chr10	3178908	rs542	T	C	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.530;SOR=0.460;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr10	3179703	rs4881107	C	T	3490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=5.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-0.060;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:151,96:0.39:247
chr10	3179708	rs4881108	A	G	3480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.086;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=7.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=0.913;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:167,97:0.37:264
chr10	3179738	rs79334726	G	A	3848.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:120,178:0.60:298
chr10	3180227	rs6901	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:56,43:0.43:99
chr10	3180298	rs10175	C	T	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:88,132:0.60:220
chr10	3180316	rs11414	T	C	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr10	3180343	rs2388559	A	G	2511.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:181,134:0.43:315
chr10	3181003	rs2279217	A	G	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:95,93:0.49:188
chr10	3181126	rs17849904	C	T	4306.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:173,204:0.54:377
chr10	3181282	rs2279220	G	A	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:176,166:0.49:342
chr10	3183747	rs7094698	A	G	5038.77	.	AC=1;AF=0.500;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	0/1:277,264:0.49:541
chr10	3185393	rs4881110	A	G	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:47,66:0.58:113
chr10	3185798	rs3736093	T	C	3441.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:143,153:0.52:296
chr10	3186723	rs9423496	G	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr10	3187749	rs3758632	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.07;ReadPosRankSum=-0.249;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	3187924	rs3758631	T	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.028;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=1.507;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr10	3188071	rs3758630	T	G	153.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.22;ReadPosRankSum=-0.619;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	3189380	rs3740607	C	T	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:170,161:0.49:331
chr10	3190265	rs4881111	A	G	4516.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:237,218:0.48:455
chr10	3190298	rs4881112	C	T	4307.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:251,212:0.46:463
chr10	3193557	rs60985673	TAAAAAAGAAACAA	T	3014.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:75,86:0.53:161
chr10	3199555	rs7086470	A	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:33,37:0.53:70
chr10	3200155	rs9423705	G	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr10	3200292	rs3182535	G	A	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=-0.545;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:101,100:0.50:201
chr10	3201010	rs3814592	C	T	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:37,31:0.46:68
chr10	3201072	rs3814593	G	T	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:93,87:0.48:180
chr10	3201097	rs3814594	T	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:135,120:0.47:255
chr10	3202065	rs4242746	T	C	3461.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:193,170:0.47:363
chr10	3202140	rs4242747	C	T	5372.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:305,271:0.47:576
chr10	3202170	rs146529168	C	CG	7855.73	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:293,270:0.48:563
chr10	3205851	rs6602034	C	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr10	3206027	rs4609511	A	G	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr10	3207793	rs34243276	T	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr10	3208557	rs12359035	A	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr10	3208581	rs58131139	G	GA	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=1.729;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:34,22:0.39:56
chr10	3208583	.	A	AGAGGAATGGCACGCTAGGGAAGGC	405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=1.462;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr10	3214369	rs4880599	A	G	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr10	3214516	rs4881118	A	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:68,63:0.48:131
chr10	3214942	rs11818724	T	C	6077.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:400,305:0.43:705
chr10	3214995	rs34460808	AC	A	10678.73	.	AC=1;AF=0.500;AN=2;DB;DP=931;set=Intersection	GT:AD:AF:DP	0/1:485,414:0.46:899
chr10	3215111	rs9423713	G	C	4198.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:164,183:0.53:347
chr10	3823906	rs112847236	C	T	6399.77	.	AC=1;AF=0.500;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	0/1:311,303:0.49:614
chr10	4867313	rs2961562	A	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	4868445	rs2924275	G	T	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	4877814	rs150127444	T	TTTTTG	2596.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:82,67:0.45:149
chr10	4879465	rs2961584	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	4879568	rs41336345	A	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,58:0.46:127
chr10	4884784	rs2924269	T	C	7465.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	4884800	rs2961592	A	G	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:116,71:0.38:187
chr10	4887988	rs2924267	G	A	5504.77	.	AC=1;AF=0.500;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	0/1:335,282:0.46:617
chr10	4889525	rs2961597	T	C	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	5005761	rs141022982	A	T	1630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.444;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=-0.262;QD=13.05;ReadPosRankSum=-1.662;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:55,70:0.56:125
chr10	5005855	rs116910432	A	G	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.15;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	5005941	rs28464583	C	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	5006098	rs7073738	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.12;MQRankSum=1.343;QD=6.98;ReadPosRankSum=0.057;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	5006119	rs41305667	G	A	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.45;MQRankSum=-0.980;QD=10.17;ReadPosRankSum=0.135;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	5009347	rs4445550	A	G	3878.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	5009364	rs2904802	T	C	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	5009449	rs7076886	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	5010367	rs12250190	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.45;QD=28.89;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	5010572	rs1138600	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.11;QD=28.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	5010718	rs61854318	T	C	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=52.50;MQRankSum=1.675;QD=2.99;ReadPosRankSum=0.379;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr10	5010722	rs41314625	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr10	5011278	rs76142681	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:79,44:0.36:123
chr10	5014264	rs6143754	CATTTTTGACAATA	C	1329.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr10	5014545	rs67671072	T	TA	8709.73	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:6,371:0.98:377
chr10	5018132	rs201420087	A	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5018146	rs199593717	T	A	141.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=35.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	5018174	rs200458191	C	T	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	5018178	rs201224840	G	A	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	5018204	rs199601200	A	G	89.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5018221	.	C	G	89.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5018224	rs200577408	C	T	89.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=29.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	5019959	rs8483	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.14;QD=27.53;SOR=1.363;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	5032284	rs12774733	C	T	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:150,117:0.44:267
chr10	5037914	rs146951526	G	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:189,118:0.38:307
chr10	5041398	rs56259037	T	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.867;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.66;MQRankSum=-0.405;QD=12.87;ReadPosRankSum=-0.374;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr10	5045566	rs200254599	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.361;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=44.26;MQRankSum=-1.681;QD=1.43;ReadPosRankSum=-0.761;SOR=1.755;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr10	5045862	rs67165977	A	G	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.306;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=6.088;MLEAC=1;MLEAF=0.500;MQ=43.68;MQRankSum=-0.734;QD=11.99;ReadPosRankSum=-0.493;SOR=1.408;set=HC	GT:AD:AF:DP	0/1:58,47:0.45:105
chr10	5120157	rs4881396	G	T	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	5120227	rs11252921	C	T	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-1.031;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:58,37:0.39:95
chr10	5120332	rs7894134	T	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr10	5136499	rs3763676	A	G	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.58;ReadPosRankSum=-0.241;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	5138554	.	C	T	1042.77	.	AC=1;AF=0.500;AN=2;DP=130;set=Intersection	GT:AD:AF:DP	0/1:78,52:0.40:130
chr10	5138607	rs7741	G	A	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:92,81:0.47:173
chr10	5138747	rs11551177	A	G	4349.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:147,195:0.57:342
chr10	5139685	rs12387	G	A	10905.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr10	5140980	rs34140485	T	C	1934.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:114,95:0.45:209
chr10	5141262	rs66712885	G	T	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr10	5141609	rs34186955	C	T	5250.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:249,255:0.51:504
chr10	5144562	rs35558480	C	CG	184.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	5147909	rs2275928	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:67,42:0.39:109
chr10	5149649	rs34320249	T	G	1997.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:76,99:0.57:175
chr10	5149703	rs3209896	G	A	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr10	5196273	rs1781930	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	5196348	.	G	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.639;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:105,20:0.16:125
chr10	5196479	rs1334471	C	T	3734.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:220,188:0.46:408
chr10	5200013	rs72776976	G	A	3849.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:156,177:0.53:333
chr10	5200075	rs142921071	CA	TG	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;JOINED;set=Intersection	GT:AD:AF:DP	0/1:71,63:0.47:134
chr10	5200739	rs5782810	T	TAGG	6273.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	5200861	rs2020172	C	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr10	5202104	rs2801889	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.06;QD=26.27;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	5202241	rs1761599	C	T	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=1.178;QD=10.50;ReadPosRankSum=-0.108;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:124,133:0.52:257
chr10	5203748	rs3750573	A	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr10	5203864	rs11253021	C	T	2832.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:166,139:0.46:305
chr10	5203944	rs11325738	AC	A	2013.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:107,75:0.41:182
chr10	5204071	rs72776979	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr10	5204676	rs7080497	A	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	5204928	rs7097295	C	T	1868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.453;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.174;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:124,95:0.43:219
chr10	5242346	rs7099651	G	A	16053.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr10	5244441	rs2151896	A	G	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	5246584	rs11253042	C	A	5335.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:234,251:0.52:485
chr10	5246670	rs1413781	A	C	10659.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr10	5255025	rs4880718	A	G	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=27.05;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	5258955	rs2050309	C	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	5260505	rs5782814	GAA	G	619.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.11;MQRankSum=0.530;QD=24.79;ReadPosRankSum=-1.422;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr10	5260553	rs1413622	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=26.67;SOR=1.439;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	5260812	rs2398157	A	G	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	5435918	rs7097775	G	A	3137.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:138,142:0.51:280
chr10	5436260	rs7910290	A	G	2054.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:89,100:0.53:189
chr10	5436487	rs6601957	A	G	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:84,75:0.47:159
chr10	5437365	rs11253156	A	G	4954.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:201,237:0.54:438
chr10	5446632	rs10904491	G	A	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr10	5446794	rs7477466	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:109,87:0.44:196
chr10	5446942	rs4881435	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr10	5446965	rs4881436	G	A	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr10	5471200	rs4604777	C	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	5495157	rs11253185	A	G	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr10	5495218	rs4567355	T	C	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	5498248	rs4242790	G	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,31:0.44:71
chr10	5541181	rs10904516	T	C	7074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.603;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.61;ReadPosRankSum=0.758;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:238,188:0.44:426
chr10	5541181	.	TTC	CTT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=5;MMLQ=28;MQ=60.0;NF=86;NR=78;PP=2944;QD=20;SC=CCTGGCCTTCTTCGCCGCCGT;SbPval=0.57;Source=Platypus;TC=403;TCF=207;TCR=196;TR=164;WE=5541191;WS=5541171;set=Platypus	GT:AD:AF:DP	1/0:239,164:0.41:403
chr10	5541183	rs10904517	C	T	7074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=1.328;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:237,186:0.44:423
chr10	5541230	rs11546426	T	C	4719.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:268,231:0.46:499
chr10	5558145	rs5782832	G	GC	18743.73	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,511:1.00:511
chr10	5558349	rs4072067	G	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	5567366	rs1142825	G	A	5705.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:194,266:0.58:460
chr10	5682641	rs7896492	C	T	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,155:0.99:157
chr10	5682855	rs4427479	TG	CC	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	5684342	rs6602421	C	G	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	5684534	rs61006671	T	TA	862.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr10	5684553	rs12268809	A	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,25:0.38:66
chr10	5684616	rs56802263	G	GT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.296;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	5693379	rs6602483	A	G	12017.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:6,464:0.99:470
chr10	5708311	rs6602610	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr10	5708360	rs75474563	G	A	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=2.166;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:53,51:0.49:104
chr10	5708420	rs6602613	T	C	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.86;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	5708422	rs76394459	A	T	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-1.412;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:89,75:0.46:164
chr10	5708434	rs56178329	C	G	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.483;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:92,67:0.42:159
chr10	5766337	rs10737018	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	5766597	rs139204494	TAG	T	38.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	5781628	rs2254067	T	G	9494.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr10	5781969	rs2797486	A	T	10293.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr10	5784509	rs2797488	G	A	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	5788110	rs200661404	A	AT	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-1.537;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:16,42:0.72:58
chr10	5788608	rs2797491	G	C	16311.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr10	5790420	rs2669142	T	C	15046.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr10	5804455	rs3736462	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.75;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	5804471	rs148906161	G	GTTTT	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	5804474	rs59569509	G	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	5804531	rs2797501	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	5827901	rs17403348	T	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.134;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:67,38:0.36:105
chr10	5837038	rs10752110	T	C	3083.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	5853923	rs200241905	TA	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=1.280;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr10	5919947	rs2985043	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	5920121	rs1052420	T	C	12194.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr10	5922186	rs811561	T	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	5924942	rs617165	C	G	9694.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr10	5925971	rs631947	C	A	11557.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr10	5926079	rs3750657	AT	CC	10131.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr10	5926131	rs7919785	G	A	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	5926154	rs7907053	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	5936425	rs12781700	C	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	5948638	rs7082434	C	T	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	5952854	rs7067928	C	T	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	5957270	rs10508298	C	T	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	5960209	rs2387092	C	T	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	5966192	rs2274030	A	G	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	5966535	.	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.390;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr10	5967176	rs11255971	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	5978411	rs646406	T	C	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	5990899	rs4367845	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	6005674	rs3136614	G	A	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.020;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:119,72:0.38:191
chr10	6008030	rs3181148	C	T	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr10	6008172	rs2296139	C	T	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:139,115:0.45:254
chr10	6019698	rs8177628	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr10	6041873	rs11596136	C	T	3164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=0.700;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:151,158:0.51:309
chr10	6041923	rs10905599	T	C	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:185,165:0.47:350
chr10	6042034	rs10795731	C	T	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.273;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	6061277	rs7069976	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	6061781	rs10752175	T	C	12903.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr10	6062051	rs9804284	T	A	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	6063674	rs942200	T	C	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:89,98:0.52:187
chr10	6066462	rs12722574	G	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	6067969	rs2228150	C	T	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,38:0.57:67
chr10	6150828	rs374720400	GCTCTGTC	G	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr10	6150837	.	C	T	393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-1.155;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr10	6150843	.	G	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.273;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.848;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr10	6150844	.	C	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=1.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.864;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr10	6150845	.	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-1.117;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr10	6150848	rs75593307	ACCTG	A	352.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr10	6154425	rs41295363	A	C	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:102,130:0.56:232
chr10	6156118	rs10795823	T	C	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	6187115	rs11256972	A	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,34:0.58:59
chr10	6188591	rs7074372	A	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr10	6245317	rs6602514	G	T	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr10	6255838	rs2794982	C	A	1956.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:61,81:0.57:142
chr10	6258015	rs2148293	T	C	3986.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	6258052	rs2148294	G	A	6822.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	6258300	rs2516622	A	C	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	6258311	rs2516623	T	C	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	6258796	rs2182412	T	C	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	6258840	rs5782881	GC	G	2885.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	6258937	rs2765827	A	G	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	6259239	rs2516624	G	A	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	6261704	rs1557111	T	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	6266956	rs4747951	G	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,18:0.45:40
chr10	6267175	rs4747952	C	A	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:218,181:0.45:399
chr10	6273170	rs35890201	C	CT	2865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.028;QD=7.08;ReadPosRankSum=-1.705;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:212,193:0.48:405
chr10	6319884	.	G	GT	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-1.016;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:68,19:0.22:87
chr10	6368707	rs7087657	C	T	2447.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.533;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	6368721	rs7074209	G	T	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.96;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	6368724	rs7074211	G	T	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	6368760	rs7087682	C	T	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	6392848	rs744254	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	6472962	rs601150	T	G	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	6504126	rs604663	T	C	5372.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=1.285;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	6504136	rs678304	C	G	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.94;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	6527143	rs2236379	G	A	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:221,189:0.46:410
chr10	6527344	rs661891	A	C	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr10	6531552	rs4750528	A	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr10	6533625	rs527611	T	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:33,32:0.49:65
chr10	6533877	rs3815975	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,82:0.52:158
chr10	6533900	rs3815974	C	T	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:56,45:0.45:101
chr10	7205932	rs140120334	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr10	7230524	rs2462712	G	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	7230824	rs2762607	A	C	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:40,49:0.55:89
chr10	7285632	rs2248474	A	G	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr10	7318724	rs7075434	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr10	7318803	rs7097601	T	C	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:88,64:0.42:152
chr10	7319078	rs4338435	C	G	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.115;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=0.798;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:34,33:0.49:67
chr10	7319088	rs4611096	A	G	1063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.63;ReadPosRankSum=0.303;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:22,25:0.53:47
chr10	7423960	rs2254756	T	C	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	7423984	rs2254760	G	T	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	7601708	rs7092583	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr10	7601770	rs7074077	G	C	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.893;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:46,36:0.44:82
chr10	7601809	rs201992976	TTTTTG	T	725.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,21:0.34:61
chr10	7605067	rs3824658	C	T	2672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.24;ReadPosRankSum=-1.542;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:132,129:0.49:261
chr10	7605077	rs61199416	TC	T	10165.73	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	7605101	rs10795551	A	G	9273.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr10	7605457	rs10737022	G	A	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	7614918	rs11255194	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr10	7614936	rs10737023	T	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr10	7615195	rs4747517	C	A	1855.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:110,89:0.45:199
chr10	7618380	rs3818783	C	T	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:39,31:0.44:70
chr10	7618501	rs2275068	A	G	3020.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:168,155:0.48:323
chr10	7618686	rs2275069	T	G	5860.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:357,293:0.45:650
chr10	7618993	rs10458802	G	A	2395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=1.958;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:104,66:0.39:170
chr10	7618997	rs10458803	G	A	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=0.881;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:93,66:0.42:159
chr10	7621578	rs11255201	C	A	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	7622047	rs12256183	A	G	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	7622075	rs12262854	G	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	7627788	.	C	CA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.215;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.945;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chr10	7629168	rs945149	C	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	7683873	rs41382649	A	T	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:56,32:0.36:88
chr10	7697504	rs11255267	G	A	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:176,126:0.42:302
chr10	7747034	rs113278189	TA	T	566.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.424;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=2.145;QD=5.90;ReadPosRankSum=-1.051;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:50,46:0.48:96
chr10	7763661	rs7075296	A	G	14948.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr10	7769604	rs2277226	A	G	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	7773976	rs7098319	A	G	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr10	7776831	rs1926937	C	T	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	7785017	rs3736965	T	C	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	7788495	rs7912419	T	C	2886.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	7795911	rs7342066	A	G	13213.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,522:1.00:522
chr10	7797903	rs138937189	C	CAACT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	7804308	rs1980856	C	T	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	7811407	rs2296734	G	C	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	7829759	rs17553878	C	T	6624.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:299,313:0.51:612
chr10	7830319	rs1475406	G	C	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	7846152	rs914609	T	C	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	7866268	rs7070208	C	G	12635.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr10	7866557	rs1244471	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:60,60:0.50:120
chr10	8006798	rs4747647	A	G	12332.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr10	8007559	rs10795583	GT	CC	7964.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=1.283;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	8017033	rs58555368	CAAAAAAAAAAAAA	C	2507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.719;QD=25.59;ReadPosRankSum=-2.519;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:29,69:0.70:98
chr10	8019124	rs10795584	A	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,64:0.52:124
chr10	8051225	rs150758246	G	A	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:131,136:0.51:267
chr10	8093034	rs501764	G	T	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=28.52;SOR=1.485;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr10	8106231	rs59622436	GT	G	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=1.017;QD=10.32;ReadPosRankSum=-1.144;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:6,21:0.78:27
chr10	8106248	rs201042786	TTTTC	T	711.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.87;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	8111409	rs422628	C	T	11509.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,435:1.00:435
chr10	8111621	rs406103	C	T	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:92,89:0.49:181
chr10	8115668	rs373223232	TA	T	838.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=0.654;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:158,101:0.39:259
chr10	9449563	.	G	C	2962	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=45;MMLQ=24;NF=251;NR=293;PP=2962;QD=20;SC=CGGGGTCCTAGACACAGAGCG;SbPval=0.63;Source=Platypus;TC=1372;TCF=663;TCR=709;TR=544;WE=9449571;WS=9449543;set=Platypus	GT:AD:AF:DP	1/0:828,544:0.40:1372
chr10	9449628	.	A	G	2965	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=23;MQ=52.88;NF=129;NR=221;PP=2965;QD=20;SC=TGCAGAGCCCATCAGTGGGTT;SbPval=0.51;Source=Platypus;TC=352;TCF=130;TCR=222;TR=350;WE=9449636;WS=9449618;set=Platypus	GT:AD:AF:DP	1/1:2,350:0.99:352
chr10	11047207	rs2773499	C	G	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.465;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.134;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:50,27:0.35:77
chr10	11047218	rs377078265	GGAGA	G	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=1.155;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr10	11290997	rs2653522	A	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr10	11299607	rs56183744	A	G	1160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.312;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.54;ReadPosRankSum=1.195;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:73,63:0.46:136
chr10	11299735	rs2277212	A	T	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:74,74:0.50:148
chr10	11308790	rs72051267	TTC	T	1844.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.291;QD=32.36;ReadPosRankSum=1.268;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:1,56:0.98:57
chr10	11316813	rs67013685	TAGTG	T	1492.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	11316909	rs2244576	G	C	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	11316987	rs2244573	G	A	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:163,165:0.50:328
chr10	11330525	rs2277214	G	A	5294.77	.	AC=1;AF=0.500;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	0/1:295,252:0.46:547
chr10	11330548	rs2277215	G	A	4134.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:159,189:0.54:348
chr10	11330576	rs2277216	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:100,115:0.53:215
chr10	11356093	rs5783207	T	TTTTG	4183.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	11361182	rs11596315	A	T	8987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.01;ReadPosRankSum=-1.210;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:259,240:0.48:499
chr10	11361186	rs11596316	A	G	8892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=-0.589;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:254,230:0.48:484
chr10	11362789	rs35548374	GT	G	3334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.749;QD=8.73;ReadPosRankSum=1.831;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:97,285:0.75:382
chr10	11505175	rs3740204	A	G	8841.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	11527786	rs3824642	T	C	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:128,130:0.50:258
chr10	11532658	rs17150444	T	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr10	11543086	rs3781056	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.611;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr10	11567271	rs10508424	G	A	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr10	11569722	rs17150509	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr10	11653772	rs145486773	C	CGCGGCCCCGG	3350.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	11653818	rs113478750	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,61:0.62:99
chr10	11654040	.	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.239;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr10	11789290	rs4750089	G	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	11789382	rs4750090	G	A	7295.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	11789405	rs4750091	G	A	9123.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	11789511	rs4750092	C	G	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	11791741	rs58243400	CCCAGCAAT	C	2898.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	11791772	.	CTTTTTTTTTTTTTTTT	C	1664	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=20;HapScore=1;MGOF=174;MMLQ=25;MQ=54.51;NF=3;NR=35;PP=1664;QD=43.8684210526;SC=TGGTTTAGACCTTTTTTTTTT;SbPval=0.57;Source=Platypus;TC=38;TCF=3;TCR=35;TR=38;WE=11791795;WS=11791762;set=Platypus	GT:AD:AF:DP	1/0:0,38:1.00:38
chr10	11797322	.	CAA	C,CA	2524.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.01;MQRankSum=0.461;QD=13.22;ReadPosRankSum=1.389;SOR=0.740;set=HC	GT:AD:AF:DP	1/2:25,102,64:0.53,0.34:191
chr10	11797436	rs7899215	T	C	29199.77	.	AC=2;AF=1.00;AN=2;DB;DP=1113;set=Intersection	GT:AD:AF:DP	1/1:0,1103:1.00:1103
chr10	11797467	rs7910140	G	A	23254.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:0,891:1.00:891
chr10	11797619	rs902892	C	G	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	11797675	rs3750695	G	A	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	11970709	.	G	GA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.333;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr10	11978499	rs7921794	T	G	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	12020981	rs11257462	C	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr10	12046455	rs9943399	T	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	12068645	.	C	CT	1082.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.012;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=8.449;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.202;QD=6.73;ReadPosRankSum=0.027;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:60,101:0.63:161
chr10	12071316	rs78315861	A	G	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:104,108:0.51:212
chr10	12071397	rs11257490	G	A	9047.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr10	12111090	rs1279138	T	C	8130.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	12123363	rs1722446	T	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,43:0.45:96
chr10	12123666	rs10906066	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,60:0.46:130
chr10	12123667	rs1722445	A	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr10	12126490	rs11257527	A	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr10	12131081	rs3740015	T	G	8884.77	.	AC=1;AF=0.500;AN=2;DB;DP=889;set=Intersection	GT:AD:AF:DP	0/1:451,435:0.49:886
chr10	12140030	rs10906076	C	G	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:88,77:0.47:165
chr10	12142284	.	C	CTGTTTTTTTTTTTT	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=-0.000;DP=81;ExcessHet=3.0103;FS=10.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=1.454;SOR=3.036;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	12143105	rs2062988	C	G	3330.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:159,164:0.51:323
chr10	12148259	rs1701472	A	C	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	12148286	rs1615510	T	C	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr10	12149939	rs1722462	C	T	8901.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr10	12159647	rs2399771	A	G	9475.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr10	12159844	.	GATCTCCCCTCTCCT	G	351	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=2;HapScore=3;MGOF=7;MMLQ=28;MQ=60.0;NF=2;NR=18;PP=351;QD=19.7;SC=AGGTGATGCAGATCTCCCCTC;SbPval=0.42;Source=Platypus;TC=28;TCF=2;TCR=26;TR=20;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:8,20:0.71:28
chr10	12159845	rs34396265	ATCTCCCCTCTCC	A	1872.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	12159859	rs376672314	ATT	A	1869.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	12159861	.	T	A	351	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=4;HapScore=3;MGOF=7;MMLQ=28;MQ=60.0;NF=1;NR=8;PP=351;QD=42.8634680608;SC=CCTCTCCTATTTTTATTTATT;SbPval=0.6;Source=Platypus;TC=20;TCF=2;TCR=18;TR=9;WE=12159870;WS=12159834;set=Platypus	GT:AD:AF:DP	1/1:11,9:0.45:20
chr10	12160602	rs11257543	T	C	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-2.487;QD=18.85;ReadPosRankSum=-0.869;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:29,26:0.47:55
chr10	12160606	rs11257544	T	C	1036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-2.342;QD=18.19;ReadPosRankSum=-1.587;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr10	12160623	rs11257545	C	T	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.92;QD=37.46;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	12160623	.	CGCCCGCCTT	TGCCCGCCTC,TGCCCGCCTT	652	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.1;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=13;MMLQ=23;MQ=58.94;NF=28,56;NR=10,18;PP=552,652;QD=15.933365128;SC=CCTCGTGATCCGCCCGCCTTG;SbPval=0.45;Source=Platypus;TC=74;TCF=56;TCR=18;TR=38,74;WE=12160640;WS=12160613;set=Platypus	GT:AF:DP	0/1:0.51:74
chr10	12160632	rs112318056	T	C	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=1.358;QD=11.40;ReadPosRankSum=0.261;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:45,50:0.53:95
chr10	12171740	rs11257552	G	A	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	12172775	rs7070684	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	12197259	rs10906089	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	12203197	rs2399784	C	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	12212186	rs11257577	T	A	8758.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	12215870	rs35088067	CT	C	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.585;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.943;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.797;QD=10.91;ReadPosRankSum=-0.172;SOR=0.103;set=HC	GT:AD:AF:DP	0/1:11,47:0.81:58
chr10	12226923	.	T	C	1121.77	.	AC=1;AF=0.500;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	0/1:63,55:0.47:118
chr10	12227067	rs2140660	C	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	12228459	rs11257584	T	C	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr10	12240640	rs11257591	G	C	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.364;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=4.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=1.523;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr10	12240691	rs150891932	GT	G	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=3.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-1.602;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:41,41:0.50:82
chr10	12252217	rs2271804	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr10	12288302	rs36042706	A	G	2860.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:157,140:0.47:297
chr10	12292286	rs12779647	C	G	3289.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:198,165:0.45:363
chr10	12292344	rs10951	A	G	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:204,162:0.44:366
chr10	12292454	rs1051055	A	G	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:41,49:0.54:90
chr10	12595037	rs2815629	G	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	12833003	rs10717134	TA	T	1905.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:93,131:0.58:224
chr10	12866356	rs2482023	A	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	12867598	rs1757051	C	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:147,151:0.51:298
chr10	12870642	rs55888132	G	GA	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.53;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	12870659	rs140735308	G	GCC	1171.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.06;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	12870714	rs2482075	A	G	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	12940377	rs10752280	T	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	12940455	rs10906249	A	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	13152504	rs34617995	GT	G	715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.744;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.401;QD=23.86;ReadPosRankSum=-0.375;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr10	13152515	rs79529484	T	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr10	13158262	rs2244380	C	T	2592.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:115,125:0.52:240
chr10	13164596	rs489040	A	G	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:72,68:0.49:140
chr10	13166076	rs523747	A	G	5816.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	13167860	rs676302	G	T	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr10	13175682	rs7086894	A	C	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr10	13178697	rs10906310	C	A	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:131,101:0.44:232
chr10	13206233	rs7090944	A	T	5507.77	.	AC=1;AF=0.500;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	0/1:246,264:0.52:510
chr10	13212884	rs2147279	C	T	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	13212915	rs116353713	C	A	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:106,99:0.48:205
chr10	13214812	rs6602637	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	13224886	rs3765520	G	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr10	13225119	rs11258235	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:91,77:0.46:168
chr10	13230837	rs6602641	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr10	13230934	rs7904071	C	T	2856.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:160,143:0.47:303
chr10	13231194	rs2296221	A	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,30:0.57:53
chr10	13233471	rs7916762	C	T	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr10	13234356	rs7905784	A	T	3974.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:210,193:0.48:403
chr10	13237015	rs10796036	G	A	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr10	13239917	rs35803060	AT	A	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=-2.310;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr10	13240887	rs4750317	G	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:118,81:0.41:199
chr10	13246284	rs2277221	T	C	2912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.43;ReadPosRankSum=0.015;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:160,149:0.48:309
chr10	13246448	rs79054074	C	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr10	13275437	rs41291315	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr10	13275514	rs4750327	A	G	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	13275553	rs3829925	T	G	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:103,128:0.55:231
chr10	13275676	rs3829926	T	C	5091.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:220,243:0.52:463
chr10	13275691	rs10796042	G	T	6103.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:239,278:0.54:517
chr10	13276179	rs942418	A	G	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:2,286:0.99:288
chr10	13320236	rs11133	C	T	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr10	13320411	rs825625	A	T	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	13325946	rs648173	C	T	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,46:0.61:76
chr10	13330402	rs473407	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr10	13334058	rs1408364	A	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	13337319	rs654536	A	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr10	13337330	rs654553	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr10	13337588	rs1747682	G	A	2760.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	13340236	rs28938169	G	A	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-1.913;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:60,75:0.56:135
chr10	13341836	rs511959	G	C	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	13341900	rs512109	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	13344017	.	AGTTTC	A	2126.73	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:63,57:0.47:120
chr10	13344169	rs3758423	G	A	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	13350590	rs112637295	AT	A	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-2.620;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr10	13364143	rs149378948	CT	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=3.642;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.583;QD=5.14;ReadPosRankSum=0.625;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:31,32:0.51:63
chr10	13371855	rs61851591	C	A	3410.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:243,178:0.42:421
chr10	13375906	rs10752297	T	C	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.407;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:117,113:0.49:230
chr10	13378445	rs2275128	A	G	4501.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:182,213:0.54:395
chr10	13534851	rs2251555	A	G	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	13538928	rs5783327	CA	C	1770.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.639;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.839;QD=9.42;ReadPosRankSum=-0.492;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:39,149:0.79:188
chr10	13541724	rs113234105	T	TAAAAC	3590.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	13570569	.	GGCGGCAGCGGCGGCA	G	4135.73	.	AC=2;AF=1.00;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	13570673	rs10906401	A	G	1078.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.436;QD=22.95;ReadPosRankSum=-0.486;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:2,45:0.96:47
chr10	13633928	.	G	GT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=2.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-0.055;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:151,33:0.18:184
chr10	13653490	rs2478121	C	A	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	13653653	rs1135102	A	G	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr10	13658335	rs2253308	G	A	8420.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr10	13696570	rs10906442	A	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	13702668	rs10796105	T	C	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	13705298	rs10796108	G	T	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	13705307	rs55876188	ACT	A	2572.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	13717076	rs3814663	C	G	8864.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr10	13735603	rs943090	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	13735685	rs200663128	CT	C	766.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.474;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.665;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.501;QD=2.98;ReadPosRankSum=-0.152;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:152,105:0.41:257
chr10	13743646	rs1541005	G	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	13749155	rs41291335	G	C	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:83,92:0.53:175
chr10	13749228	rs11258541	G	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	13782110	rs11258567	A	C	6471.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=2.337;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	13782124	rs10906462	A	G	7480.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	13782605	rs6602679	G	A	8877.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	13838329	rs3740123	G	A	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:43,30:0.41:73
chr10	13838340	rs3740122	T	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:54,41:0.43:95
chr10	13838659	rs7079138	T	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:58,74:0.56:132
chr10	13900693	rs10430802	C	A	2124.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:84,96:0.53:180
chr10	14050161	.	C	CTGTGTG	708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.198;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr10	14372258	rs1218445	G	C	1896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-0.985;QD=9.53;ReadPosRankSum=-0.613;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:100,99:0.50:199
chr10	14372306	rs35432616	G	GA	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=6.452;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.114;QD=4.88;ReadPosRankSum=0.899;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr10	14425204	rs12780876	T	A	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=0.964;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:79,54:0.41:133
chr10	14478618	rs11259096	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:38,27:0.42:65
chr10	14569998	.	CTT	C	546.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=-0.110;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr10	14570173	rs34584902	GT	G	154.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.89;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr10	14570250	rs56011267	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr10	14572644	rs7922221	G	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	14595392	rs11259179	A	G	2753.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	14882040	rs140243251	AAT	A	993.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,34:0.52:65
chr10	14882060	rs3830599	AT	A	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.737;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:32,29:0.48:61
chr10	14884509	rs12770830	G	A	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:206,250:0.55:456
chr10	14939067	rs45473500	A	C	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:250,241:0.49:491
chr10	14941055	rs7896464	T	G	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr10	14968656	.	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.445;QD=1.51;ReadPosRankSum=-0.595;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:23,12:0.34:35
chr10	14970168	rs41298886	G	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:56,49:0.47:105
chr10	14976326	rs374055066	CA	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.173;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.519;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:43,25:0.37:68
chr10	14976414	rs7076862	G	A	14177.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr10	14977469	rs41297018	C	T	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:140,102:0.42:242
chr10	15098897	rs12767853	C	T	1607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.72;ReadPosRankSum=-0.316;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:74,76:0.51:150
chr10	15106281	rs7075914	C	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr10	15106379	rs10796255	A	G	1516.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:125,87:0.41:212
chr10	15120865	rs7092227	G	A	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr10	15121267	.	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.857;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=-1.005;QD=2.74;ReadPosRankSum=1.332;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr10	15130603	rs138683743	TC	T	1044.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;MQ=60.11;set=Intersection	GT:AD:AF:DP	0/1:52,43:0.45:95
chr10	15130675	rs12261006	C	T	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:170,158:0.48:328
chr10	15138264	rs6602812	T	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr10	15145361	rs35539850	G	A	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:160,124:0.44:284
chr10	15145855	rs15772	C	G	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:116,148:0.56:264
chr10	15151907	rs7918775	T	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	15154974	rs7072269	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	15161274	rs10906832	A	C	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:23,34:0.60:57
chr10	15177191	.	T	TTTG	1387.73	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr10	15210717	.	A	ACGCCC	1737.73	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr10	15256194	rs3814165	G	A	3823.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:170,179:0.51:349
chr10	15256757	rs11451379	C	CT	118.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.241;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	15263100	rs6602828	C	T	2196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-1.959;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:156,116:0.43:272
chr10	15296572	rs3824620	A	T	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	15413071	rs192904368	G	A	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=0.302;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr10	15559327	rs373105081	AT	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.405;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.706;QD=1.48;ReadPosRankSum=0.044;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr10	15573050	rs1041135	A	G	6529.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr10	15590372	rs9333229	G	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	15600271	rs2277204	A	G	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-1.055;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:61,49:0.45:110
chr10	15648104	rs2282384	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr10	15648243	rs2282383	C	T	6620.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	15650401	rs3041592	TAC	T	439.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	15685983	rs4748191	A	T	2608.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	15713507	rs7100228	A	G	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	15713541	rs6602051	T	C	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	15713667	rs7100510	C	G	8617.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr10	15729923	rs1954181	C	T	16944.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr10	15761482	rs193294851	G	A	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr10	15761527	rs9333070	T	C	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	16526840	rs2275731	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr10	16547058	rs7904014	A	G	4389.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:242,215:0.47:457
chr10	16556710	rs7909832	T	C	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:342,291:0.46:633
chr10	16876922	rs703060	A	G	73.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	16882518	rs703064	T	C	844.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:55,43:0.44:98
chr10	16911567	rs703074	C	T	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr10	16911605	rs703075	C	A	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr10	16911749	rs117035284	C	T	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:113,105:0.48:218
chr10	16943371	rs2796835	G	C	10942.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr10	16945905	rs5783520	TG	T	1060.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,37:0.47:78
chr10	16948177	rs780807	A	G	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	16949401	rs780805	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:49,55:0.53:104
chr10	16949447	rs780804	A	C	5230.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	16949550	rs3740165	T	C	2721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=0.030;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:111,136:0.55:247
chr10	16967401	rs1276712	C	T	11435.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr10	16967445	rs1276713	T	G	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	17007818	rs57634749	C	CT	1934.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	17007847	rs61151602	T	TA	3332.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	17008171	rs1687708	A	G	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	17008174	rs1687707	T	C	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.39;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	17008183	rs1687706	C	T	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.95;SOR=1.716;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	17024503	rs1801231	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	17024615	rs1801229	A	T	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	17026010	rs2291523	A	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	17026384	rs3012494	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	17032559	rs925522	A	C	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=6.399;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	17032559	.	ACA	CCG	1144	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=1;NR=36;PP=1144;QD=32.3639966179;SC=GGGCAACAGCACATGGAAAAT;SbPval=0.57;Source=Platypus;TC=43;TCF=1;TCR=42;TR=37;WE=17032569;WS=17032549;set=Platypus	GT:AD:AF:DP	1/1:6,37:0.86:43
chr10	17032561	rs925523	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.33;SOR=6.229;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	17110474	rs4747297	C	T	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=1.580;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr10	17110595	rs10795440	G	A	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:127,134:0.51:261
chr10	17113563	rs1801225	C	T	4266.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:205,209:0.50:414
chr10	17141952	rs1033765	C	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr10	17146667	rs4748353	C	T	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:50,38:0.43:88
chr10	17147521	rs1801224	G	T	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:262,213:0.45:475
chr10	17156151	rs1801222	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:97,80:0.45:177
chr10	17157630	rs2295813	C	T	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:71,75:0.51:146
chr10	17164760	rs11409967	A	AC	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=6.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=-0.768;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:32,30:0.48:62
chr10	17171265	rs2281648	G	C	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr10	17195428	rs2273736	G	C	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr10	17199419	rs2295810	C	G	7351.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr10	17202381	.	G	GA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.63;ReadPosRankSum=1.275;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr10	17203598	rs151076824	AAAAGT	A	188.87	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	17204246	rs111781208	TA	T	2108.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=1.431;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:26,155:0.86:181
chr10	17204248	rs200006483	A	T	1779.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=1.454;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:58,124:0.68:182
chr10	17210822	rs17464824	A	C	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	17243406	rs1885395	C	G	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	17243480	rs1885394	T	A	10579.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr10	17278171	rs165531	C	G	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	17364962	rs10466289	A	G	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr10	17365012	rs7085734	TT	AA	2230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.560;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr10	17365044	rs7085750	T	G	1530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-2.285;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:76,76:0.50:152
chr10	17365169	rs12354751	A	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr10	17365228	rs112083592	G	GCGCACGCACACACA	482.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr10	17373617	rs2120716	G	A	3881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=0.160;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:174,190:0.52:364
chr10	17645814	rs2252808	C	T	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr10	17659131	rs11254692	C	A	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	17659149	rs7895850	C	T	8531.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	17756596	rs12221	T	C	3404.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:253,174:0.41:427
chr10	17875857	rs56278466	T	G	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:189,172:0.48:361
chr10	17891705	rs1926736	A	G	6602.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:450,345:0.43:795
chr10	17891842	rs148412728	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr10	18155475	rs371919290	C	T	152.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=21.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	18183335	.	T	C	483.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.89;MQRankSum=0.995;QD=20.16;ReadPosRankSum=-0.252;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr10	18242304	rs691112	T	C	12323.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,279:1.00:279
chr10	18242311	rs10764176	A	G	12423.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	18254595	rs62619938	C	T	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:117,158:0.57:275
chr10	18266783	rs1926740	G	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.278;SOR=0.249;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr10	18266989	rs2478568	G	A	3510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=0.984;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:138,169:0.55:307
chr10	18267096	rs2437260	G	A	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr10	18270422	rs1926739	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr10	18276682	rs10508555	G	C	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,45:0.56:80
chr10	18280054	rs140784602	C	CT	380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.454;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=5.22;ReadPosRankSum=0.098;SOR=0.388;set=HC	GT:AD:AF:DP	0/1:34,39:0.53:73
chr10	18550450	rs951046	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	18691018	rs3750592	G	A	2321.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:67,105:0.61:172
chr10	18795596	rs10741088	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:65,54:0.45:119
chr10	18795612	rs200375169	A	AAC	1730.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.467;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.89;ReadPosRankSum=-0.200;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr10	18795613	.	TGC	ACT	2768	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=28;MQ=60.0;NF=2;NR=33;PP=2768;QD=20;SC=GAAGTGAGCATGCCCTTTTGG;SbPval=0.96;Source=Platypus;TC=73;TCF=11;TCR=62;TR=35;WE=18795623;WS=18795603;set=Platypus	GT:AD:AF:DP	1/0:38,35:0.48:73
chr10	18795613	.	TGC	T	1730.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.213;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=8.614;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.60;ReadPosRankSum=-0.242;SOR=1.928;set=HC	GT:AD:AF:DP	0/1:41,43:0.51:84
chr10	18804094	rs7088091	T	C	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	18828663	rs4747352	G	T	4478.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.973;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.93;ReadPosRankSum=-0.512;SOR=1.598;set=HC	GT:AD:AF:DP	1/1:1,131:0.99:132
chr10	18828669	rs67831174	GT	G	458.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.259;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:18,49:0.73:67
chr10	18828721	rs3841459	C	CAA	1576.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	18836957	rs4747353	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	18837285	rs3817494	T	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	18875051	.	G	GA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-0.318;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:90,21:0.19:111
chr10	18898701	rs4748493	T	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	18898960	rs4748494	A	G	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:57,40:0.41:97
chr10	18903281	rs11405681	C	CA	1600.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.042;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=1.040;SOR=0.320;set=HC	GT:AD:AF:DP	1/1:12,88:0.88:100
chr10	18903605	rs4636555	A	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	18931512	rs7907153	T	C	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	18937579	rs45468894	A	AAAG	3098.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	18940157	rs3740102	C	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr10	18940185	rs140572895	G	GT	1578.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=-0.166;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:11,89:0.89:100
chr10	18957647	rs10741127	T	G	1351.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.844;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:69,69:0.50:138
chr10	18957752	rs34839131	GC	G	450.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,15:0.47:32
chr10	18963995	rs45466995	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr10	19355918	rs72787427	A	G	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr10	19376734	rs112293611	G	GT	1916.73	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:111,117:0.51:228
chr10	19392857	rs10159517	T	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.673;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:72,59:0.45:131
chr10	19417181	rs11008573	T	C	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:139,103:0.43:242
chr10	19492566	rs7902704	A	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr10	19492702	rs16918344	C	T	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:255,144:0.36:399
chr10	19492832	rs7476259	A	C	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr10	19493117	rs72786543	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	19493215	rs202203955	T	TG	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=0.126;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:48,40:0.45:88
chr10	19493309	rs10508578	G	A	1932.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:116,99:0.46:215
chr10	19493415	rs2358348	C	G	826.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,37:0.63:59
chr10	19493993	rs4601653	G	C	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:171,150:0.47:321
chr10	19494310	rs7090927	T	C	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,26:0.48:54
chr10	19498278	rs2358355	G	A	10533.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr10	19498722	rs2245136	A	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	19546796	rs10763903	T	C	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:57,49:0.46:106
chr10	19546877	rs10508582	C	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	19572136	rs2484099	C	G	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:56,63:0.53:119
chr10	19572207	rs4748570	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:17,19:0.53:36
chr10	19620559	rs7082205	G	A	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr10	19637088	rs1577307	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr10	19641239	rs10616221	CTG	C	11553.73	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:2,324:0.99:326
chr10	19676553	rs12773592	A	G	4748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=4.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.15;ReadPosRankSum=0.159;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:121,127:0.51:248
chr10	19676561	rs12771333	G	A	4750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.27;ReadPosRankSum=1.477;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:133,127:0.49:260
chr10	19678286	rs10763974	C	T	6599.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	19678449	rs78832888	A	G	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:90,102:0.53:192
chr10	19678497	rs10763975	G	A	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	19678602	rs7896087	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	19739459	rs6415957	T	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr10	19777982	rs72788548	G	A	6653.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:358,323:0.47:681
chr10	19778056	rs2151234	G	A	3797.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:193,186:0.49:379
chr10	19778072	rs2184035	A	G	11271.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr10	19780543	rs10827499	C	T	5658.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:259,279:0.52:538
chr10	19896830	rs7909976	C	A	6650.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	19904870	.	A	AT	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.108;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.627;QD=2.35;ReadPosRankSum=-0.895;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr10	20105936	rs989767	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,35:0.46:76
chr10	20105996	rs63234960	TGGC	T	4178.73	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:121,111:0.48:232
chr10	20290956	rs1409344	T	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=7.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.24;ReadPosRankSum=-1.105;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr10	20336112	rs10740961	G	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	20357183	rs7072650	A	G	3786.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:175,180:0.51:355
chr10	20436838	rs4626974	G	C	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:150,147:0.49:297
chr10	20500743	rs10827997	T	G	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr10	20506418	rs3817405	G	A	5499.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:253,276:0.52:529
chr10	20534333	rs2778979	A	G	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	20568507	rs966569	A	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr10	20568524	rs2681949	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	20841150	rs2496601	C	T	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	21076307	rs2296607	C	T	9890.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:2,381:0.99:383
chr10	21098879	.	G	GAAA	432.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=11.536;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-0.941;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr10	21104694	rs4748727	A	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	21108247	rs1006362	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	21112111	rs11012353	A	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	21115332	rs1409348	T	C	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	21115608	rs10828139	A	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	21120116	rs10491056	A	G	15019.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:1,590:1.00:591
chr10	21141440	rs3831100	AG	A	1412.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	21141469	rs703089	T	C	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	21157763	rs5783755	CA	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=0.548;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr10	21176945	rs703100	G	A	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	21185792	.	G	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.947;SOR=0.413;set=HC	GT:AD:AF:DP	0/1:81,26:0.24:107
chr10	21185821	rs788971	A	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr10	21188197	rs788976	T	A	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr10	21461410	rs11413698	G	GA	1975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.708;QD=6.79;ReadPosRankSum=1.826;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:141,150:0.52:291
chr10	21805466	rs112207161	C	CCCTCCT	2620.73	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:122,70:0.36:192
chr10	22193422	rs792455	T	C	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=0.915;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr10	22208630	rs2807978	T	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	22497710	rs2479114	C	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr10	22498209	rs2243897	A	G	4013.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:232,201:0.46:433
chr10	22498468	rs838759	C	T	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:255,245:0.49:500
chr10	22498484	rs3059425	C	CAGA	9165.73	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:276,238:0.46:514
chr10	22498749	rs2478476	A	T	14148.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr10	22618095	rs201721612	CTA	C	2261.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:57,65:0.53:122
chr10	22635359	.	G	GTTCTTCTTC	434.73	.	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=39.52;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	22828841	rs150482394	GGA	G	572.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=1.255;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:59,40:0.40:99
chr10	22828843	rs201600931	A	G	313.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.713;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=0.866;SOR=0.282;set=HC	GT:AD:AF:DP	0/1:67,32:0.32:99
chr10	22830719	rs943192	G	C	15920.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr10	22839628	rs2230469	T	C	7078.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	22856946	rs2296624	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	22862487	rs11013052	C	A	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	23003226	rs1132816	A	G	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	0/1:305,240:0.44:545
chr10	23244917	rs11013203	C	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr10	23297301	rs11817610	C	T	880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.23;ReadPosRankSum=-0.116;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:60,47:0.44:107
chr10	23297336	rs11819616	A	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=-0.703;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:45,35:0.44:80
chr10	23303253	rs1054052	T	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	23408139	rs2296468	A	G	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	23482635	rs7918487	T	C	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	23528557	rs7075896	C	A	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	23592468	rs4439422	G	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	23611188	rs5783834	TATTA	T	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	23622202	rs4259746	G	A	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	23632970	rs11013408	T	G	4203.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr10	23633566	rs2036917	C	A	3611.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	24498403	rs72774807	G	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	24564831	rs10764458	C	T	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	24564859	rs17583862	A	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	24669747	rs41277412	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr10	24722200	rs28528212	G	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr10	24783384	rs3818673	T	C	12783.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.23;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr10	24783393	rs3818672	C	A	12846.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr10	24784014	rs78603449	TAAA	T,TA	3299.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=22.45;ReadPosRankSum=-0.711;SOR=0.839;set=HC	GT:AD:AF:DP	1/2:10,33,104:0.22,0.71:147
chr10	24813282	rs2297329	G	C	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:177,141:0.44:318
chr10	24813327	rs2297328	A	G	3826.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:222,197:0.47:419
chr10	24822219	rs11598911	C	G	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	24831505	rs867040	G	C	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr10	24833137	rs2250411	C	T	3459.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:159,156:0.50:315
chr10	24873369	rs1127893	C	G	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:102,75:0.42:177
chr10	24878042	rs9663520	C	A	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr10	24878129	rs7478260	G	A	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr10	24879281	rs10734053	A	G	11344.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:2,431:1.00:433
chr10	24889901	rs3748221	T	G	3377.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:224,172:0.43:396
chr10	24908686	rs3748222	T	C	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:185,122:0.40:307
chr10	25140411	rs1326192	G	C	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=29.30;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	25273311	rs5783912	G	GA,GAA	577.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.758;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=6.502;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.44;MQRankSum=1.298;QD=10.70;ReadPosRankSum=0.048;SOR=0.658;set=HC	GT:AD:AF:DP	1/2:15,22,17:0.41,0.31:54
chr10	25273988	rs2279547	G	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	25312689	rs4748997	A	G	2385.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:84,106:0.56:190
chr10	25313818	rs7086282	C	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:103,114:0.53:217
chr10	25350125	rs55694736	G	A	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:40,60:0.60:100
chr10	25465327	rs11014433	G	A	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr10	25701341	rs2480345	C	G	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:82,79:0.49:161
chr10	25755732	rs67115852	CACAT	C	2341.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.59;QD=43.37;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	26286367	rs7911700	G	A	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	26310410	rs3737275	T	C	4472.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:147,211:0.59:358
chr10	26310679	rs17666079	A	C	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:39,27:0.41:66
chr10	26312824	rs1339814	G	A	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:77,80:0.51:157
chr10	26355771	rs3824703	C	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr10	26355862	rs3824702	G	T	2638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=-1.896;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:93,71:0.43:164
chr10	26355872	rs3824701	A	G	2765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.54;ReadPosRankSum=-1.669;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:101,77:0.43:178
chr10	26355906	rs3824700	G	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:145,130:0.47:275
chr10	26355992	rs3824699	A	G	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:126,118:0.48:244
chr10	26356014	rs3824698	CA	TG	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;JOINED;set=Intersection	GT:AD:AF:DP	0/1:95,85:0.47:180
chr10	26356037	rs3824696	C	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=0.095;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:72,50:0.41:122
chr10	26356066	rs3824695	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr10	26357625	rs3817421	T	C	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr10	26357747	rs35379457	CG	TA	8846.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;JOINED;set=Intersection	GT:AD:AF:DP	0/1:231,228:0.50:459
chr10	26357820	rs3817419	C	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:208,191:0.48:399
chr10	26359180	rs3758441	T	G	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr10	26359200	rs3834403	T	TA	1018.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:49,43:0.47:92
chr10	26417531	rs17739425	T	G	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr10	26436287	rs2368158	G	T	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:58,77:0.57:135
chr10	26443646	rs3818956	G	A	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:119,138:0.54:257
chr10	26446312	rs3758449	G	A	3621.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:174,176:0.50:350
chr10	26457536	rs1342320	C	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	26462790	rs3740232	G	A	2010.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:121,96:0.44:217
chr10	26463043	rs3740231	A	T	4079.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:191,200:0.51:391
chr10	26463130	rs1999240	C	A	5585.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:243,260:0.52:503
chr10	26463569	rs3758448	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr10	26463587	rs3758447	C	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr10	26781355	rs1775245	T	C	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:103,93:0.47:196
chr10	26781388	rs1775246	G	A	3315.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	26790136	rs812007	T	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:76,65:0.46:141
chr10	26802633	rs35115529	A	AT	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.017;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr10	26986932	rs2448114	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr10	26990849	rs1677726	T	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=1.309;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr10	26991037	rs1677725	A	G	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-3.654;QD=7.28;ReadPosRankSum=0.774;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:115,35:0.23:150
chr10	26991045	rs1780186	T	C	1136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.469;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-3.603;QD=7.53;ReadPosRankSum=0.017;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:115,36:0.24:151
chr10	26991067	rs71403882	CG	C	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=3.937;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.538;QD=7.30;ReadPosRankSum=-1.482;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr10	26991179	rs1780185	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.500;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=2.638;QD=2.79;ReadPosRankSum=-1.447;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr10	26993597	rs34296355	AT	A	621.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr10	26993725	rs1677730	G	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.34;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	26993737	rs1780193	A	T	1615.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	26994150	rs1780192	A	C	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr10	26998739	rs2368183	G	C	3591.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:146,174:0.54:320
chr10	27009268	rs116424900	A	G	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=9.98;ReadPosRankSum=1.577;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:64,66:0.51:130
chr10	27009334	rs1780196	A	G	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	27031214	rs10764638	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	27037799	rs3839922	TG	T	525.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr10	27054375	rs7915128	C	T	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr10	27059608	rs1324637	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:23,26:0.53:49
chr10	27065976	rs7096584	G	A	2652.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:141,132:0.48:273
chr10	27284224	.	A	G	636.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:76,33:0.30:109
chr10	27294449	rs3215884	CAT	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	27303605	rs2274741	A	T	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	27317778	rs72807627	T	C	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	27317840	rs10829163	C	T	2742.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	27318370	rs10829164	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	27322372	rs72515848	TTA	T	1515.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=43.31;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	27322391	rs12763200	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	27324781	rs66585308	G	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	27325997	rs35564547	T	C	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	27326017	rs66494764	C	T	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	27326765	rs59771436	TA	T	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	27326999	rs7096505	T	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	27329167	rs10829167	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	27375377	rs10443987	A	T	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	27375559	rs66853312	C	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	27375626	rs67629636	A	G	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	27381349	rs2297145	T	C	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	27382236	rs2297146	C	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr10	27382528	rs2297149	G	A	4883.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	27382586	rs2297150	G	C	7527.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	27389197	rs7897309	T	C	3747.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	27389314	rs3737056	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	27400861	rs9833	G	A	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:93,106:0.53:199
chr10	27401056	rs11015538	C	T	4501.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:256,228:0.47:484
chr10	27403635	rs12782501	T	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=1.351;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr10	27404927	rs2297151	G	T	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	27405096	rs2297152	A	G	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:101,71:0.41:172
chr10	27405310	rs2480718	C	G	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	27405360	rs35804170	G	GC	1365.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:36,45:0.56:81
chr10	27409555	rs10829190	G	A	2428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=4.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=0.267;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:148,130:0.47:278
chr10	27412669	rs2274743	A	T	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr10	27415906	rs10829192	C	A	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr10	27423744	rs2275752	T	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,68:0.54:127
chr10	27434483	rs2274634	G	A	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:94,108:0.53:202
chr10	27437964	rs11538750	T	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:135,187:0.58:322
chr10	27437994	rs10764675	C	T	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:73,95:0.57:168
chr10	27442121	rs57671772	A	G	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-1.498;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:58,68:0.54:126
chr10	27442247	rs788221	G	C	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:46,33:0.42:79
chr10	27443012	rs2274636	A	G	1140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=0.768;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:58,58:0.50:116
chr10	27443083	rs2274637	A	T	1323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=1.279;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:75,72:0.49:147
chr10	27444329	rs7907981	T	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr10	27444344	rs7907988	T	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:36,37:0.51:73
chr10	27456003	rs788238	G	A	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	27506854	rs1775355	C	T	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	27508837	rs788213	T	C	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	27523967	rs534226	G	A	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	27529565	rs2489372	T	C	25622.77	.	AC=2;AF=1.00;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	1/1:0,963:1.00:963
chr10	27538942	rs590142	T	C	3898.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	27570130	rs1252880	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.96;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	27577568	rs2780686	G	A	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.90;QD=25.89;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr10	27577615	rs11015640	T	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:81,57:0.41:138
chr10	27577640	rs3818746	G	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr10	27577669	rs138438481	A	T	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.022;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=53.13;MQRankSum=1.242;QD=8.28;ReadPosRankSum=-1.486;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:63,49:0.44:112
chr10	27595356	rs7085523	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:60,69:0.53:129
chr10	27687225	rs2505323	A	G	2258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-1.049;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:97,111:0.53:208
chr10	27687759	rs200872708	CT	C	6564.73	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:200,194:0.49:394
chr10	27687775	rs1638630	T	C	12110.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr10	27687965	rs2505327	A	G	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:253,215:0.46:468
chr10	27687994	rs2484173	A	G	4530.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:279,230:0.45:509
chr10	27688109	rs2429485	T	C	4488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=420;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=1.643;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:198,219:0.53:417
chr10	27688173	.	T	TA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=0.956;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:96,23:0.19:119
chr10	27692062	rs2429491	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:35,25:0.42:60
chr10	27692099	rs2484179	A	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:64,56:0.47:120
chr10	27692279	rs2484180	A	C	2312.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:153,122:0.44:275
chr10	27692371	rs2484181	T	G	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:39,40:0.51:79
chr10	27692403	rs2505307	C	A	485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=7.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.701;SOR=0.164;set=HC	GT:AD:AF:DP	0/1:20,27:0.57:47
chr10	27700887	rs2429499	G	A	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr10	27702169	rs6482625	C	T	6859.77	.	AC=1;AF=0.500;AN=2;DB;DP=746;set=Intersection	GT:AD:AF:DP	0/1:405,339:0.46:744
chr10	27702256	rs112067123	G	GC	10298.73	.	AC=1;AF=0.500;AN=2;DB;DP=866;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:407,417:0.51:824
chr10	27702688	rs7087552	C	T	4002.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:295,209:0.41:504
chr10	27702725	rs6482626	A	G	3881.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:260,203:0.44:463
chr10	27703234	rs7071851	A	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:49,66:0.57:115
chr10	27822619	rs72264716	TTC	T	600.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	27964470	rs2253230	G	A	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.648;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:117,133:0.53:250
chr10	28032136	rs2252651	C	T	2276.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.320;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	28142245	rs7898085	A	G	245.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.802;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	28151604	rs34181914	AT	A	1495.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:73,79:0.52:152
chr10	28225897	rs2297646	G	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	28228865	rs7893462	A	G	1227.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:83,66:0.44:149
chr10	28233120	rs3824590	A	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr10	28233469	rs3802517	T	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr10	28233931	rs34717952	G	A	8594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=-0.826;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:218,224:0.51:442
chr10	28233931	.	GCA	ACG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=82;NR=117;PP=2944;QD=20;SC=AAGGAACACCGCATTCCCATA;SbPval=0.53;Source=Platypus;TC=409;TCF=167;TCR=242;TR=199;WE=28233941;WS=28233921;set=Platypus	GT:AD:AF:DP	1/0:210,199:0.49:409
chr10	28233933	rs34084011	A	G	8594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.03;ReadPosRankSum=-1.301;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:210,219:0.51:429
chr10	28247957	rs34350686	A	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,50:0.55:91
chr10	28259924	.	TAAATAAATAAATAAAC	T	704.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.269;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=66.23;MQRankSum=0.248;QD=17.19;ReadPosRankSum=2.012;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr10	28259936	rs67085081	TAAAC	T	720.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr10	28260151	rs4405206	A	G	9350.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	28348815	rs1361922	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr10	28358548	rs2763318	CA	AC	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	28378758	rs2997211	T	C	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	28436534	rs11006897	A	G	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:185,126:0.41:311
chr10	28438835	rs72381252	TCTGCA	T	1333.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr10	28491313	rs11598304	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr10	28822373	rs12767429	A	C	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	28823126	rs35136724	G	A	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:39,32:0.45:71
chr10	28872481	.	C	CAA	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.986;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.583;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr10	28879838	rs41283724	A	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr10	28899841	rs11371837	A	AT	1016.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.058;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:66,73:0.53:139
chr10	28903400	rs71391055	G	GTCTTCTTTAAAACA	2947.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	29136129	rs813935	A	G	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	29137085	rs787323	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	29162295	.	GTA	G	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.236;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr10	29162324	rs35236571	TAC	T	1307.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.36;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	29169046	rs199740171	AT	A	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.672;QD=1.62;ReadPosRankSum=0.057;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:110,37:0.25:147
chr10	29577924	rs2768670	G	C	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=58.52;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	29578084	rs17851935	A	G	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	29578180	.	A	ATGAAGCCAACTGTCTC	3065.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	29578346	rs11347424	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.009;SOR=0.140;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr10	29578351	rs2768693	T	C	694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.120;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=8.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.924;SOR=2.053;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr10	29580735	rs2148901	C	T	3185.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.62;MQRankSum=2.537;QD=41.92;ReadPosRankSum=3.951;SOR=1.457;set=HC	GT:AD:AF:DP	1/1:2,74:0.97:76
chr10	29580743	rs2148902	G	A	3241.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.28;MQRankSum=2.492;QD=41.56;ReadPosRankSum=3.265;SOR=1.349;set=HC	GT:AD:AF:DP	1/1:2,76:0.97:78
chr10	29580942	rs2209788	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	29580944	rs1774948	C	A	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.92;QD=40.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	29580961	rs28733628	C	T	36.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=18.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	29581309	rs1751955	C	T	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	29581440	rs3818550	C	T	20985.77	.	AC=2;AF=1.00;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	1/1:0,790:1.00:790
chr10	29598896	rs2796293	A	G	12836.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr10	29747155	rs139380407	GCTC	G	3374.73	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,88:0.48:182
chr10	29747221	rs41299212	G	A	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:217,215:0.50:432
chr10	29747618	rs7098527	T	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr10	29754535	rs17694739	G	A	1561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-2.779;QD=10.14;ReadPosRankSum=-0.096;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:74,80:0.52:154
chr10	29754609	rs1057952	T	C	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:52,50:0.49:102
chr10	29759174	rs3215848	TG	T	1749.73	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:107,76:0.42:183
chr10	29759225	rs11007607	A	G	3451.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:241,185:0.43:426
chr10	29760209	rs2274494	C	T	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-0.193;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:39,48:0.55:87
chr10	29762997	rs932794	C	G	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:67,68:0.50:135
chr10	29769647	rs10763720	G	A	6564.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:280,316:0.53:596
chr10	29770551	rs11007612	A	G	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:208,188:0.47:396
chr10	29776289	rs61192312	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:31,28:0.47:59
chr10	29777558	rs61737742	G	A	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:71,45:0.39:116
chr10	29779977	rs61848920	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-9.979;QD=0.37;ReadPosRankSum=-0.409;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:89,12:0.12:101
chr10	29782066	rs4749439	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chr10	29783813	rs6481600	G	A	4521.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	29783885	rs1056782	A	G	5521.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:59,235:0.80:294
chr10	29783908	rs78773460	A	G	1662.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=0.040;QD=5.62;ReadPosRankSum=-1.580;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:208,88:0.30:296
chr10	29783984	rs3031505	GAAACT	G	2447.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:165,71:0.30:236
chr10	29784004	rs28427082	G	A	3353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.418;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=25.846;MLEAC=1;MLEAF=0.500;MQ=51.62;MQRankSum=9.416;QD=17.20;ReadPosRankSum=1.076;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:52,143:0.73:195
chr10	29784072	rs2368406	G	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	29784114	rs6481601	T	C	464.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.377;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.70;MQRankSum=0.265;QD=23.24;ReadPosRankSum=-0.174;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr10	29784188	rs2368401	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.07;QD=41.29;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	29784188	.	AAA	GAG	647	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=2;HapScore=1;MGOF=33;MMLQ=28;MQ=40.31;NF=4;NR=8;PP=647;QD=58.3723229052;SC=GGATCTCCAGAAATCCCAGGG;SbPval=0.72;Source=Platypus;TC=13;TCF=5;TCR=8;TR=12;WE=29784198;WS=29784178;set=Platypus	GT:AD:AF:DP	1/1:1,12:0.92:13
chr10	29784190	rs2368400	A	G	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.53;QD=44.73;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	29785191	rs11007625	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	29811587	rs369704322	C	A	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr10	29822032	rs1247696	C	T	7339.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	29839864	rs1270874	A	C	7196.77	.	AC=1;AF=0.500;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	0/1:393,368:0.48:761
chr10	29891161	rs11007666	A	G	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:168,167:0.50:335
chr10	29891260	rs12416605	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:101,99:0.49:200
chr10	29891321	rs2505901	T	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr10	29932841	rs2488690	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr10	29932918	rs2488689	G	A	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:52,90:0.63:142
chr10	30306804	rs2478839	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:116,87:0.43:203
chr10	30316072	rs3739998	C	G	4756.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:236,217:0.48:453
chr10	30316208	rs2185724	T	C	9239.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:385,430:0.53:815
chr10	30316872	rs3739996	T	C	4447.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:214,221:0.51:435
chr10	30317073	rs9337951	G	A	4548.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:266,221:0.45:487
chr10	30317826	rs7920682	A	G	9791.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:317,273:0.46:590
chr10	30317838	rs7920686	A	G	9650.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:298,257:0.46:555
chr10	30317949	rs2478835	C	T	5514.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:297,265:0.47:562
chr10	30336672	rs72810797	C	T	6963.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:332,335:0.50:667
chr10	30611614	rs2484284	C	T	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	30615638	rs1029172	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	30626003	rs12221163	C	T	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr10	30629082	rs2689215	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	30629136	rs1047988	G	A	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:77,81:0.51:158
chr10	30629226	rs1047991	G	A	4123.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:178,197:0.53:375
chr10	30629434	rs36002941	CTATTT	C	2256.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:47,58:0.55:105
chr10	30637995	rs10826783	C	G	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:111,97:0.47:208
chr10	30653561	rs7094285	C	G	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:46,56:0.55:102
chr10	30728101	rs1042058	T	C	4497.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:261,225:0.46:486
chr10	30728250	rs2907	A	G	4561.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:304,230:0.43:534
chr10	30739058	rs303428	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr10	30749895	rs3034	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr10	30901722	rs3832672	GC	G	1353.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr10	30901756	rs9954	G	A	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:128,98:0.43:226
chr10	30915618	rs3852488	G	A	1277.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr10	30915637	rs3864847	A	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:89,58:0.39:147
chr10	30915898	rs61844263	C	T	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=-4.643;QD=0.49;ReadPosRankSum=-4.931;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:77,12:0.13:89
chr10	30915906	rs41288999	A	G	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr10	30918424	rs10826831	C	T	2657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=2.950;QD=9.07;ReadPosRankSum=1.807;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:159,134:0.46:293
chr10	30918486	rs75095145	G	A	4532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-11.148;QD=9.79;ReadPosRankSum=1.708;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:331,132:0.29:463
chr10	30918492	rs76101300	G	T	4557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=2.726;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-11.467;QD=9.72;ReadPosRankSum=3.558;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:334,135:0.29:469
chr10	30918549	rs201069868	G	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:287,119:0.29:406
chr10	30918597	rs74551644	T	C	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.373;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=14.641;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-6.074;QD=2.82;ReadPosRankSum=-4.001;SOR=1.637;set=HC	GT:AD:AF:DP	0/1:210,49:0.19:259
chr10	30974174	rs4749580	T	C	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:119,141:0.54:260
chr10	30978100	rs199874956	GGT	CAC	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.872;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.351;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-4.534;QD=2.16;ReadPosRankSum=1.357;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:32,5:0.14:37
chr10	30978106	rs2368405	G	C	1594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=3.771;QD=37.97;ReadPosRankSum=-0.845;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:5,37:0.88:42
chr10	30978112	rs2887239	G	A	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.375;MLEAC=1;MLEAF=0.500;MQ=54.28;MQRankSum=4.044;QD=33.30;ReadPosRankSum=2.474;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:11,41:0.79:52
chr10	30978114	rs4747722	A	G	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.301;MLEAC=1;MLEAF=0.500;MQ=53.96;MQRankSum=3.918;QD=31.49;ReadPosRankSum=2.045;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:11,44:0.80:55
chr10	30978164	rs28363791	A	G	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr10	30978274	rs4988769	T	C	4735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.209;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=9.647;MLEAC=1;MLEAF=0.500;MQ=54.29;MQRankSum=-10.549;QD=12.83;ReadPosRankSum=1.711;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:139,230:0.62:369
chr10	30978282	rs11008182	G	T	2683.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:255,143:0.36:398
chr10	30982475	rs7084628	A	G	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=18.009;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-11.629;QD=0.77;ReadPosRankSum=-3.188;SOR=2.602;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chr10	30982526	rs7068784	T	G	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:167,88:0.35:255
chr10	30985081	rs10826846	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	30986240	rs138927815	C	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=45.48;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	30986242	rs11008188	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.49;QD=45.47;SOR=1.949;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	30986244	rs11007616	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.50;QD=45.13;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	30986253	rs4747726	G	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=42.51;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	30986296	rs4749587	C	T	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	30986348	rs4749588	G	A	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,64:0.42:151
chr10	30986364	rs7078530	G	A	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-0.369;QD=12.69;ReadPosRankSum=-1.974;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:68,99:0.59:167
chr10	30989188	rs10740829	G	C	18295.77	.	AC=2;AF=1.00;AN=2;DB;DP=686;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr10	30993404	rs11008192	G	A	5685.77	.	AC=1;AF=0.500;AN=2;DB;DP=621;set=Intersection	GT:AD:AF:DP	0/1:340,279:0.45:619
chr10	30993448	rs10826848	G	A	16602.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr10	31001494	rs1826619	A	C	6785.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:382,334:0.47:716
chr10	31134557	rs17229657	T	C	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr10	31138817	rs10160116	G	A	3412.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:210,171:0.45:381
chr10	31146643	rs4237394	T	C	3674.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:239,184:0.43:423
chr10	31166088	rs10763848	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr10	31803516	rs220060	G	A	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	32096803	rs1412493	G	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=5.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=0.061;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	32097806	rs1029077	A	T	244.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr10	32097851	rs1029078	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr10	32099547	.	TAA	T	851.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.757;QD=8.97;ReadPosRankSum=2.283;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:57,38:0.40:95
chr10	32103077	rs2799012	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr10	32106851	rs2778650	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,43:0.56:77
chr10	32115133	rs2255544	A	G	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	32120678	rs2808100	C	T	638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.651;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:47,33:0.41:80
chr10	32128611	rs2808096	A	G	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.844;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=1.215;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:66,28:0.30:94
chr10	32141460	rs2799021	T	C	3690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.133;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:185,186:0.50:371
chr10	32143208	rs2808090	A	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr10	32307534	rs11428920	T	TA	2191.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	32307536	rs55938482	T	A	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	32309005	rs1775715	A	G	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr10	32311969	rs176924	A	G	10632.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	32328526	rs1251363	G	C	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	32329467	rs72775196	G	A	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr10	32561858	rs11594459	A	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr10	32575793	rs2986931	A	G	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:123,113:0.48:236
chr10	32635834	rs11597888	G	A	2721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.48;ReadPosRankSum=-0.575;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:176,145:0.45:321
chr10	32742234	rs2505335	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	32742256	rs2490505	T	G	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.340;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	32745396	rs2244153	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	32751901	rs2505380	G	A	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	32752008	.	A	G	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=-2.363;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:29,21:0.42:50
chr10	32759918	rs2460710	G	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	32856936	rs35386168	T	TG	101.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.53;MQRankSum=0.000;QD=7.27;ReadPosRankSum=-0.468;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr10	32974969	rs1762526	A	G	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	32978136	rs1763784	G	A	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	33015782	rs928701	G	A	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	33015855	rs4145863	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	33018351	rs1414548	G	C	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	33093858	rs35054696	TAC	T	4116.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:6,139:0.96:145
chr10	33093879	.	ACC	A	807	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=5;HapScore=2;MGOF=13;MMLQ=26;MQ=60.09;NF=19;NR=41;PP=807;QD=13.5333333333;SC=ACACACACACACCCCTCACAT;SbPval=0.44;Source=Platypus;TC=94;TCF=28;TCR=66;TR=60;WE=33093888;WS=33093869;set=Platypus	GT:AD:AF:DP	0/1:34,60:0.64:94
chr10	33123774	rs11009107	T	C	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	33123824	rs4448627	G	C	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	33134696	rs145287806	T	TAC	210.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr10	33137515	rs2488294	T	G	1910.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.82;ReadPosRankSum=2.050;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,76:0.99:77
chr10	33137551	rs2504011	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	33143396	rs1418538	G	A	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	33144132	rs34544892	GT	G	743.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.131;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.108;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.486;QD=11.10;ReadPosRankSum=-2.400;SOR=0.137;set=HC	GT:AD:AF:DP	0/1:13,54:0.81:67
chr10	33165226	rs2488305	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	33190567	rs2153875	C	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	33201128	rs2504020	C	G	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	33209266	rs2230396	G	T	9801.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr10	33211440	rs2252752	T	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	33219008	rs2256455	T	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	33469181	rs1048804	A	G	7113.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:411,359:0.47:770
chr10	33471761	.	G	GCGCACACACACACA	490.73	.	AC=1;AF=0.500;AN=2;DP=70;set=Intersection	GT:AD:AF:DP	0/1:34,20:0.37:54
chr10	33474644	rs61760432	G	A	6260.77	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:313,305:0.49:618
chr10	33481478	rs2243920	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr10	33483561	rs2474726	T	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:42,48:0.53:90
chr10	33483837	rs149169549	CAT	C	1723.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,48:0.45:107
chr10	33484577	rs2474724	C	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:50,42:0.46:92
chr10	33495306	rs2474715	A	G	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:145,127:0.47:272
chr10	33496681	rs74656391	A	AAG	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr10	33542835	rs7074620	T	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	33552407	rs2070299	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr10	33552518	rs2070298	A	C	4062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.22;ReadPosRankSum=-1.504;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:74,101:0.58:175
chr10	33552522	rs2070297	G	A	4147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.60;ReadPosRankSum=-0.692;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:83,109:0.57:192
chr10	33552696	rs7079053	A	G	10127.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr10	33619562	rs1411924	C	T	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	33623251	rs3750733	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:62,51:0.45:113
chr10	34408745	rs3004928	A	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	34558839	rs41276094	G	A	3121.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:112,137:0.55:249
chr10	34663981	rs35263377	AAC	A	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.816;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	34688287	rs2796011	G	A	10203.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr10	34739166	rs982687	T	C	8391.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	34985197	rs5784425	C	CA,CAA	4964.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=2.780;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.000;QD=14.06;ReadPosRankSum=1.095;SOR=0.948;set=HC	GT:AD:AF:DP	1/2:60,233,60:0.66,0.17:353
chr10	35103684	rs113044591	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr10	35302705	rs12830	C	T	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,27:0.40:68
chr10	35320355	rs17582954	T	C	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:94,92:0.49:186
chr10	35320383	rs3740083	C	T	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:104,118:0.53:222
chr10	35322024	rs12261654	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr10	35324076	rs2244174	A	G	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr10	35327766	rs2384284	G	T	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr10	35328088	rs11010077	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr10	35338699	rs7900480	G	A	6137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=0.403;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:254,295:0.54:549
chr10	35343497	rs2384288	T	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,27:0.43:63
chr10	35343525	rs2384289	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr10	35360310	rs4934711	G	A	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,41:0.51:81
chr10	35362977	rs12248333	A	G	2363.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:86,108:0.56:194
chr10	35426755	rs17499247	A	G	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=3.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.257;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:65,92:0.59:157
chr10	35467671	rs12260130	C	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr10	35484949	rs1057108	T	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:129,84:0.39:213
chr10	35490525	rs34001864	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr10	35625845	rs59114674	C	G	1876.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	35625846	.	G	GC	1867.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	35626196	rs200238658	CG	C	855.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr10	35818799	.	CA	C	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=1.699;QD=4.37;ReadPosRankSum=-1.452;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:20,17:0.46:37
chr10	35894666	rs627267	A	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	35894761	rs637881	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	35928224	rs625858	C	G	8403.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr10	35930412	rs142623421	C	CG	517.74	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:4,24:0.86:28
chr10	36811706	rs112915774	GCA	G	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=0.96;ReadPosRankSum=0.537;SOR=0.259;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr10	36812362	rs2503084	C	T	6514.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:320,308:0.49:628
chr10	36812879	rs41276116	A	G	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:228,214:0.48:442
chr10	36813180	rs2503083	T	A	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:96,127:0.57:223
chr10	36813198	rs2503082	A	G	6800.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr10	36813218	rs2505569	C	G	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:67,83:0.55:150
chr10	36813298	rs10764092	G	A	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;MQ=59.88;set=Intersection	GT:AD:AF:DP	0/1:18,23:0.56:41
chr10	37425759	.	G	GTGTATA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.64;ReadPosRankSum=1.834;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	37441072	rs1148257	T	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.91;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr10	37488689	rs1209750	G	C	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=25.17;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr10	37505099	rs34285151	C	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	37505159	rs34552277	G	A	4021.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	37505179	rs57914746	T	C	4260.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	38120302	rs75530881	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,26:0.43:61
chr10	38245843	rs9299755	C	CA	460.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=0.869;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:69,52:0.43:121
chr10	38246545	rs2799499	A	G	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr10	38260558	.	AACACAC	A,AACAC	3742.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.293;QD=34.65;ReadPosRankSum=0.759;SOR=1.274;set=HC	GT:AD:AF:DP	1/2:2,66,40:0.61,0.37:108
chr10	38299843	rs2293962	G	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,27:0.47:57
chr10	38301353	rs10716292	GT	G	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=6.004;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=1.09;ReadPosRankSum=1.647;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr10	38306128	rs2738208	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:39,45:0.54:84
chr10	38344700	rs2505232	C	G	21890.77	.	AC=2;AF=1.00;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	1/1:0,804:1.00:804
chr10	38385316	rs2474572	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	38385441	rs2474573	G	A	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	38407519	rs176889	A	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	38537070	rs1780145	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	38598955	rs12358852	T	G	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=1.465;QD=6.71;ReadPosRankSum=1.365;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:64,38:0.37:102
chr10	38599101	rs34686283	C	CT	3240.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	38638887	rs2997765	C	CA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.263;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-0.685;QD=2.30;ReadPosRankSum=2.306;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:42,20:0.32:62
chr10	38645343	rs75687299	C	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.738;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.484;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-5.099;QD=1.06;ReadPosRankSum=1.932;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:146,30:0.17:176
chr10	38645403	rs72639552	T	C	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	38647171	rs2800473	C	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	38647463	rs35215821	A	AT	2811.73	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:152,169:0.53:321
chr10	38650104	rs2804643	A	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	38654940	rs2804645	T	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr10	38667003	rs2804622	A	G	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	38672144	rs3087759	A	C	5096.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:218,239:0.52:457
chr10	38740353	rs2754385	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	38740382	rs2754386	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	42379919	.	G	GATTCC	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.79;MQRankSum=2.747;QD=1.84;ReadPosRankSum=2.277;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr10	42379941	rs375679095	TTCCGC	T	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=14.418;MLEAC=1;MLEAF=0.500;MQ=45.68;MQRankSum=-1.933;QD=6.91;ReadPosRankSum=-1.095;SOR=3.034;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr10	42379948	.	C	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=9.387;MLEAC=1;MLEAF=0.500;MQ=45.74;MQRankSum=-1.446;QD=3.71;ReadPosRankSum=0.849;SOR=2.819;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr10	42379954	rs145308431	G	C	140.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=50.59;MQRankSum=-2.093;QD=12.80;ReadPosRankSum=-1.834;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr10	42905431	rs3004228	A	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr10	42905510	rs2419684	A	C	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	42922595	rs2489725	A	G	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-1.266;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr10	42926170	rs66977053	TGG	T	108.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:35,7:0.17:42
chr10	42928668	rs67090148	GGAGTCTATC	G	362.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=11.063;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.368;QD=1.74;ReadPosRankSum=0.321;SOR=1.757;set=HC	GT:AD:AF:DP	0/1:185,23:0.11:208
chr10	42928719	.	AA	TG	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=2.249;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-11.369;QD=0.19;ReadPosRankSum=0.692;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:208,15:0.07:223
chr10	42928729	rs377527495	T	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.376;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-11.722;QD=0.27;ReadPosRankSum=0.266;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:203,17:0.08:220
chr10	42928907	.	A	AC	73	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=35;MMLQ=28;MQ=55.86;NF=0;NR=4;PP=73;QD=34.2114401178;SC=CACTCCATGAATGCCTGAGTG;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=4;WE=42928915;WS=42928897;set=Platypus	GT:AD:AF:DP	1/0:12,4:0.25:16
chr10	42947187	.	A	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=4.074;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-6.941;QD=1.01;ReadPosRankSum=1.985;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:54,6:0.10:60
chr10	42947194	.	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.100;QD=1.51;ReadPosRankSum=1.347;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:46,6:0.12:52
chr10	42947215	rs370951841	T	C	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-6.113;QD=2.05;ReadPosRankSum=0.547;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:34,5:0.13:39
chr10	42947218	.	A	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-5.861;QD=2.22;ReadPosRankSum=0.069;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:31,5:0.14:36
chr10	42949544	.	A	G	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.111;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=5.400;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-11.554;QD=0.36;ReadPosRankSum=-1.083;SOR=1.829;set=HC	GT:AD:AF:DP	0/1:124,11:0.08:135
chr10	42949546	.	A	G	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.323;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=5.393;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-11.726;QD=0.31;ReadPosRankSum=-0.836;SOR=1.818;set=HC	GT:AD:AF:DP	0/1:128,11:0.08:139
chr10	42949573	.	A	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.303;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=21.556;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-14.662;QD=0.27;ReadPosRankSum=-2.341;SOR=3.410;set=HC	GT:AD:AF:DP	0/1:214,17:0.07:231
chr10	42949576	.	A	G	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.407;ClippingRankSum=0.000;DP=250;ExcessHet=3.0103;FS=26.474;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-14.739;QD=0.21;ReadPosRankSum=-2.690;SOR=3.618;set=HC	GT:AD:AF:DP	0/1:230,18:0.07:248
chr10	42949768	rs73251888	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.836;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-16.350;QD=0.35;ReadPosRankSum=-0.685;SOR=1.131;set=HC	GT:AD:AF:DP	0/1:248,21:0.08:269
chr10	42949773	.	G	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=3.142;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-16.134;QD=0.58;ReadPosRankSum=-0.240;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:241,21:0.08:262
chr10	42949782	.	G	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=4.368;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-16.068;QD=0.79;ReadPosRankSum=-0.062;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:237,23:0.09:260
chr10	42949787	.	C	T	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=3.121;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-16.072;QD=0.66;ReadPosRankSum=1.423;SOR=1.049;set=HC	GT:AD:AF:DP	0/1:239,21:0.08:260
chr10	42949789	.	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DP=256;ExcessHet=3.0103;FS=3.141;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-15.915;QD=0.49;ReadPosRankSum=1.543;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:234,21:0.08:255
chr10	42949797	.	C	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=1.973;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-15.532;QD=0.70;ReadPosRankSum=1.891;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:222,21:0.09:243
chr10	42949828	rs200497651	T	C	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=5.770;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-12.829;QD=0.58;ReadPosRankSum=3.246;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:165,15:0.08:180
chr10	42949838	.	TG	CA	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.750;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=5.778;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-11.835;QD=1.13;ReadPosRankSum=1.371;SOR=1.480;set=HC	GT:AD:AF:DP	0/1:139,15:0.10:154
chr10	42949858	.	T	C	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.301;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=5.858;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-11.231;QD=2.40;ReadPosRankSum=-1.578;SOR=1.582;set=HC	GT:AD:AF:DP	0/1:112,16:0.12:128
chr10	42949867	.	T	C	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.566;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=5.932;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-10.584;QD=2.95;ReadPosRankSum=-3.077;SOR=1.654;set=HC	GT:AD:AF:DP	0/1:98,16:0.14:114
chr10	42949880	.	G	T	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-9.613;QD=1.92;ReadPosRankSum=-2.667;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:84,10:0.11:94
chr10	42965636	rs1255411	C	T	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.91;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	43075288	rs7921658	T	C	1443.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:117,77:0.40:194
chr10	43078323	rs17157518	T	A	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr10	43078525	rs41301639	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.488;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:55,18:0.25:73
chr10	43089156	rs7904627	C	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:293,134:0.31:427
chr10	43089965	rs210280	G	A	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	43119123	rs158377	G	T	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=0.561;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:34,66:0.66:100
chr10	43119159	rs158378	T	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr10	43128395	rs209391	C	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	43132232	rs209387	A	G	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	43232419	rs618687	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:116,49:0.30:165
chr10	43232450	rs702370	G	A	4192.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:76,183:0.71:259
chr10	43280057	rs55869085	CTT	C	9927.73	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	43281089	rs7074877	T	C	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	43297564	rs1539295	G	A	1944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=0.827;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=0.199;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:280,120:0.30:400
chr10	43297746	rs41302251	T	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.430;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=6.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.514;SOR=1.636;set=HC	GT:AD:AF:DP	0/1:81,28:0.26:109
chr10	43325945	rs142499238	T	C	2069.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:46,86:0.65:132
chr10	43572832	rs12267460	G	A	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	43572948	.	C	CGGGGGGG	179	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=4;HapScore=3;MGOF=32;MMLQ=23;MQ=60.0;NF=0;NR=6;PP=179;QD=33.5;SC=GGGCGGCGGGCGAAGGGCAGG;SbPval=1.0;Source=Platypus;TC=17;TCF=1;TCR=16;TR=6;WE=43572959;WS=43572938;set=Platypus	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	43572949	.	GAA	G	1342.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	43572950	.	AA	GC	372	.	AC=2;AF=1.00;AN=2;BRF=0.54;FR=1.0000;HP=1;HapScore=3;MGOF=32;MMLQ=23;MQ=60.0;NF=3;NR=7;PP=372;QD=42.5467874862;SC=GCGGCGGGCGAAGGGCAGGAC;SbPval=0.47;Source=Platypus;TC=12;TCF=3;TCR=9;TR=10;WE=43572959;WS=43572938;set=Platypus	GT:AD:AF:DP	1/1:2,10:0.83:12
chr10	43572951	.	A	AGCGGGCGGC	1342.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	43595836	.	A	AT,ATT	1051.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.768;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.716;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=17.24;ReadPosRankSum=-2.073;SOR=1.349;set=HC	GT:AD:AF:DP	1/2:7,25,29:0.41,0.48:61
chr10	43595968	rs1800858	A	G	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	43596179	rs2435351	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:101,45:0.31:146
chr10	43600689	rs2435352	A	G	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	43604390	rs1864404	A	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	43606687	rs1800860	A	G	13683.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr10	43607756	rs3026750	G	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	43607759	rs34827976	GC	G	2563.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	43610119	rs1799939	G	A	15119.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:1,565:1.00:566
chr10	43613843	rs1800861	G	T	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	43615633	rs1800863	C	G	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	43620549	.	C	A	74.77	.	AC=1;AF=0.500;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr10	43622217	rs2075912	T	C	9319.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr10	43657811	rs2257767	T	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	43659536	rs2503865	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	43671378	rs61579799	GT	G	555.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.510;QD=14.25;ReadPosRankSum=1.085;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:4,35:0.90:39
chr10	43694363	rs35825252	C	CA	5306.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	43695049	rs1254964	T	C	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr10	43698980	rs1254961	C	G	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	43883342	rs1126487	T	A	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:51,119:0.70:170
chr10	43932479	rs2244396	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	43976983	rs12359980	T	C	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:68,125:0.65:193
chr10	43978087	rs3750890	A	G	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:150,74:0.33:224
chr10	43991255	rs9422519	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	44052903	rs2230661	A	C	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:222,93:0.30:315
chr10	44053013	rs2230660	G	C	2021.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:286,122:0.30:408
chr10	44053585	rs2999278	C	T	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:119,58:0.33:177
chr10	44102290	rs17154006	C	T	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr10	44103923	rs3128239	G	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	44104513	rs7342073	C	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr10	44104894	rs17154012	A	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	44111800	rs17447580	T	C	4178.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:88,193:0.69:281
chr10	44285777	rs3750724	T	C	2452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.424;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.208;QD=15.52;ReadPosRankSum=1.813;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:42,116:0.73:158
chr10	44340865	rs4948785	G	A	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr10	44341072	rs10535963	CATTGATT	C	5709.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr10	44793299	rs2505734	C	T	3742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.49;ReadPosRankSum=-0.033;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:49,165:0.77:214
chr10	44793355	rs56043323	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.431;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:116,36:0.24:152
chr10	44868544	rs140248633	T	C	3827.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:69,160:0.70:229
chr10	44868856	rs266091	A	C	3112.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:300,169:0.36:469
chr10	44871548	rs2297630	G	A	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=-0.767;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:127,33:0.21:160
chr10	44873992	rs2839694	C	CCT	1999.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:132,61:0.32:193
chr10	44874216	rs2236533	G	A	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr10	45423282	rs10900131	C	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr10	45427548	rs12414447	G	T	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:68,51:0.43:119
chr10	45466726	rs4948938	G	A	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:4,23:0.85:27
chr10	45478092	rs870957	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr10	45479434	rs871043	G	A	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.303;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:159,88:0.36:247
chr10	45480383	rs371003042	C	T	6907.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:144,311:0.68:455
chr10	45496120	rs12269028	A	T	4529.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:88,204:0.70:292
chr10	45799065	.	T	TA	6822.73	.	AC=1;AF=0.500;AN=2;DP=347;set=Intersection	GT:AD:AF:DP	0/1:122,216:0.64:338
chr10	45869895	rs111916157	A	G	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:126,85:0.40:211
chr10	45891484	rs2029253	A	G	5100.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr10	45924023	rs1565096	G	A	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	45924256	rs1565097	T	C	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	45935744	rs3780914	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr10	45939136	rs7900977	T	C	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr10	45939617	rs2229136	A	G	1836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=-0.785;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:271,118:0.30:389
chr10	45939818	rs2288619	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.448;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr10	45953767	rs7908745	A	G	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:194,98:0.34:292
chr10	45954807	rs2279433	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:56,21:0.27:77
chr10	45956828	rs3764990	G	A	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr10	45958676	rs17157825	G	A	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:153,92:0.38:245
chr10	45958881	rs2291429	A	G	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:228,119:0.34:347
chr10	45959385	rs12769244	G	A	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=1.378;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:207,60:0.22:267
chr10	45959652	rs12771275	C	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.655;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:202,72:0.26:274
chr10	46135871	.	TA	T	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=5.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.055;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr10	46952667	.	A	G	149	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=28;MQ=44.8;NF=11;NR=1;PP=149;QD=15.3142677123;SC=ATTCTCAGTTAACCAAAAATG;SbPval=0.66;Source=Platypus;TC=46;TCF=42;TCR=4;TR=12;WE=46952675;WS=46952657;set=Platypus	GT:AD:AF:DP	0/1:34,12:0.26:46
chr10	46960084	rs9422009	G	A	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=4.214;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-1.285;QD=0.29;ReadPosRankSum=-0.720;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:297,41:0.12:338
chr10	46963738	rs3127783	A	G	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:85,152:0.64:237
chr10	46964884	rs28468379	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.260;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.303;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:210,46:0.18:256
chr10	46965018	rs3127785	C	G	5253.77	.	AC=1;AF=0.500;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	0/1:521,299:0.36:820
chr10	46965640	rs3737223	G	A	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:167,64:0.28:231
chr10	46965727	rs1889849	G	A	6624.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:273,312:0.53:585
chr10	46967672	rs2152530	C	T	12948.77	.	AC=1;AF=0.500;AN=2;DB;DP=983;set=Intersection	GT:AD:AF:DP	0/1:383,598:0.61:981
chr10	46968665	rs200814731	G	A	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.859;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=0.471;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:275,92:0.25:367
chr10	46968762	rs3127790	C	G	5293.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:160,244:0.60:404
chr10	46968879	rs10588658	AAC	A	1044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.71;ReadPosRankSum=-0.805;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:32,39:0.55:71
chr10	46969496	rs3127792	A	G	9579.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:239,430:0.64:669
chr10	46970573	rs6587511	C	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr10	46970654	rs915449	C	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,52:0.46:113
chr10	46970792	rs915450	G	C	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.816;SOR=1.276;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr10	46998719	rs201733825	GTCAC	G	1725.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:97,51:0.34:148
chr10	46998795	rs3127677	A	G	3500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.174;QD=6.64;ReadPosRankSum=-0.871;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:329,198:0.38:527
chr10	46998894	rs3127817	G	A	6911.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:575,372:0.39:947
chr10	46998995	rs4926045	C	G	5994.77	.	AC=1;AF=0.500;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	0/1:625,316:0.34:941
chr10	46998999	rs3127818	G	A	13477.77	.	AC=1;AF=0.500;AN=2;DB;DP=958;set=Intersection	GT:AD:AF:DP	0/1:565,389:0.41:954
chr10	46999019	rs3127819	G	A	13855.77	.	AC=1;AF=0.500;AN=2;DB;DP=992;set=Intersection	GT:AD:AF:DP	0/1:589,394:0.40:983
chr10	46999030	rs4925989	C	T	6619.77	.	AC=1;AF=0.500;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	0/1:618,347:0.36:965
chr10	46999151	rs3127820	T	C	4005.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:410,224:0.35:634
chr10	46999178	rs7090312	A	C	4404.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:382,218:0.36:600
chr10	46999189	rs3127678	C	T	7387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.030;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:369,209:0.36:578
chr10	46999190	rs3127679	A	G	13750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=577;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.96;ReadPosRankSum=-0.185;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:148,426:0.74:574
chr10	46999198	rs3127680	G	T	7723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.023;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:364,218:0.37:582
chr10	46999465	rs3127682	A	G	4063.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:358,215:0.38:573
chr10	46999484	rs11204658	G	T	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:344,187:0.35:531
chr10	46999577	rs11204659	G	T	5541.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:464,280:0.38:744
chr10	46999591	rs112620425	C	CATGAGGGAG	8599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=747;ExcessHet=3.0103;FS=1.152;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=10.153;QD=12.20;ReadPosRankSum=0.708;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:460,245:0.35:705
chr10	46999596	rs7895979	G	A	5759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=767;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.59;MQRankSum=-5.263;QD=7.53;ReadPosRankSum=0.108;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:471,294:0.38:765
chr10	46999604	rs3127683	A	G	17830.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:195,552:0.74:747
chr10	46999732	rs4579877	G	A	5910.77	.	AC=1;AF=0.500;AN=2;DB;DP=735;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:435,298:0.41:733
chr10	46999747	rs3127821	T	C	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:468,250:0.35:718
chr10	46999922	rs4926046	G	T	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:252,150:0.37:402
chr10	47000004	rs3127822	T	C	14201.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:1,531:1.00:532
chr10	47000071	rs4244614	G	A	5646.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:397,285:0.42:682
chr10	47000079	rs3127823	T	C	4037.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:420,236:0.36:656
chr10	47000146	rs3127684	C	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:307,152:0.33:459
chr10	47000188	rs3127824	A	G	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	47000217	rs72780221	G	A	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:95,43:0.31:138
chr10	47000239	rs7912299	C	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr10	47086915	rs59974223	C	T	4117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=971;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.266;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:716,254:0.26:970
chr10	47086978	rs3740294	G	A	4326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999;ClippingRankSum=0.000;DB;DP=1038;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.669;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:765,271:0.26:1036
chr10	47087474	rs1129838	C	T	26702.77	.	AC=2;AF=1.00;AN=2;DB;DP=993;set=Intersection	GT:AD:AF:DP	1/1:0,990:1.00:990
chr10	47087501	rs3824733	C	T	9212.77	.	AC=1;AF=0.500;AN=2;DB;DP=967;set=Intersection	GT:AD:AF:DP	0/1:514,451:0.47:965
chr10	47087608	rs1936339	T	C	28291.77	.	AC=2;AF=1.00;AN=2;DB;DP=977;set=Intersection	GT:AD:AF:DP	1/1:0,974:1.00:974
chr10	47087680	rs1048157	C	T	29707.77	.	AC=2;AF=1.00;AN=2;DB;DP=1095;set=Intersection	GT:AD:AF:DP	1/1:0,1091:1.00:1091
chr10	47087731	rs1048158	C	T	35385.77	.	AC=2;AF=1.00;AN=2;DB;DP=1326;set=Intersection	GT:AD:AF:DP	1/1:0,1319:1.00:1319
chr10	47087830	rs1129839	G	A	27955.77	.	AC=2;AF=1.00;AN=2;DB;DP=1020;set=Intersection	GT:AD:AF:DP	1/1:0,1015:1.00:1015
chr10	47405767	rs199589563	T	A	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.881;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.42;MQRankSum=0.674;QD=11.48;ReadPosRankSum=-0.303;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	47416908	rs3127728	A	G	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=1093;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-22.795;QD=2.90;ReadPosRankSum=3.315;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:845,245:0.22:1090
chr10	47663461	rs4074140	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.480;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr10	47664973	rs41284475	A	G	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=-0.695;QD=2.46;ReadPosRankSum=-0.605;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:415,101:0.20:516
chr10	47667164	rs4076960	C	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr10	47667380	rs4076959	C	T	12675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=1304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.607;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:668,628:0.48:1296
chr10	47667508	rs34058224	C	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.325;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.184;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-2.171;QD=1.96;ReadPosRankSum=0.394;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:134,28:0.17:162
chr10	47668707	rs4409768	T	C	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.535;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=0.098;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr10	47668720	rs72790466	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.667;SOR=1.453;set=HC	GT:AD:AF:DP	0/1:52,20:0.28:72
chr10	47668721	rs4570521	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.036;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.057;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr10	47669277	rs61845226	C	G	1593.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=59.18;set=Intersection	GT:AD:AF:DP	0/1:124,82:0.40:206
chr10	47669320	rs113650392	G	A	1631.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-6.545;QD=12.18;ReadPosRankSum=2.503;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:87,47:0.35:134
chr10	47669324	rs113530203	A	T	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=1.646;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-6.303;QD=13.63;ReadPosRankSum=2.022;SOR=0.505;set=HC	GT:AD:AF:DP	0/1:76,45:0.37:121
chr10	47673858	rs7092598	TG	CA	1339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.795;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.987;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=-0.487;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:190,45:0.19:235
chr10	47673864	rs57149643	C	A	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.909;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=0.318;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:206,47:0.19:253
chr10	47677955	rs6602879	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.941;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr10	47679638	.	TCCCTC	T	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=12.96;ReadPosRankSum=0.102;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr10	47679687	.	T	TCTC	5129.73	.	AC=1;AF=0.500;AN=2;DP=424;set=Intersection	GT:AD:AF:DP	0/1:268,137:0.34:405
chr10	47680513	rs10572939	GCC	G	924.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:73,30:0.29:103
chr10	47681520	rs73291027	G	A	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.995;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=6.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=0.713;SOR=0.312;set=HC	GT:AD:AF:DP	0/1:161,43:0.21:204
chr10	47681550	rs73291028	G	C	953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=2.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.820;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:289,74:0.20:363
chr10	47681757	rs75611076	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.288;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-1.385;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:256,70:0.21:326
chr10	47701302	rs7091749	G	C	15333.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:253,720:0.74:973
chr10	47756004	rs3013885	T	C	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	47756065	rs77623921	C	T	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=50.66;MQRankSum=3.986;QD=0.50;ReadPosRankSum=1.615;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:410,66:0.14:476
chr10	47756145	rs200192962	T	C	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:35,128:0.79:163
chr10	47915898	rs183064568	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.77;MQRankSum=0.172;QD=3.37;ReadPosRankSum=1.965;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr10	47916013	rs187960913	C	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.02;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	48370595	rs11204210	G	A	4231.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:83,185:0.69:268
chr10	48386110	rs2070706	T	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr10	48414570	rs7923671	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	48416258	rs3781226	C	T	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:26,89:0.77:115
chr10	48426798	rs743509	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr10	48429650	rs2236723	G	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	48438734	rs1126827	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-2.435;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr10	49392575	rs931743	C	G	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:25,83:0.77:108
chr10	49393002	rs2062704	C	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr10	49450443	rs280612	A	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	49609578	rs3730154	C	A	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	49613137	rs118074767	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	49633873	.	T	TAC,TACAAGAATACATTCTTGTAA	355.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=33;set=Intersection	GT:AF:DP	0/1:0.33:33
chr10	49633875	.	T	A	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.980;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=0.038;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr10	49633877	.	A	AATACATT	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.417;SOR=2.133;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr10	49633879	.	T	TTGTAAATG	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=5.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=1.670;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr10	49654342	rs1051508	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=0.089;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr10	49654403	rs1051507	C	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:83,29:0.26:112
chr10	49658248	rs1867585	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	49659559	rs10776601	C	T	14259.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr10	49659637	rs3827681	T	C	1774.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:294,116:0.28:410
chr10	49661247	rs12768229	G	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.074;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr10	49661341	rs7092959	A	G	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	49662854	rs12355719	G	A	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr10	49662879	rs12356940	C	G	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=15.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.42;ReadPosRankSum=1.005;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr10	49662884	rs11101327	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	49667713	rs1867575	G	A	15259.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr10	49667795	rs3853761	T	C	11902.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr10	49687556	rs4240511	A	C	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	49687594	rs4838601	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	49687800	rs4080665	G	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	49687850	rs3888298	G	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,36:0.40:89
chr10	49687925	rs4575219	C	G	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:89,151:0.63:240
chr10	49687964	rs4240513	A	C	13578.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	49687971	rs4240514	T	C	13816.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr10	49688014	rs4838602	C	A	7949.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr10	49690351	rs1445157	T	C	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr10	49701652	rs10735226	G	T	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	49732141	rs7089439	C	T	1324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.373;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=-1.665;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:21,63:0.75:84
chr10	49790972	rs2289808	C	T	1654.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:129,83:0.39:212
chr10	49791894	rs187490078	G	A	1042.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr10	49804554	rs10776627	A	G	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr10	49804785	rs10745280	T	G	4768.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr10	49812917	rs17010948	T	C	4825.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:73,204:0.74:277
chr10	49860130	rs2377612	G	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr10	49860153	rs2377613	G	A	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:27,16:0.37:43
chr10	49860258	rs2377614	A	G	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chr10	49939077	rs2377628	T	A	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:38,70:0.65:108
chr10	49939139	rs1993986	T	A	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:70,147:0.68:217
chr10	49944249	rs4838645	C	T	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:18,86:0.83:104
chr10	49983890	rs1871604	G	T	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	50013402	rs2170132	T	C	1992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.007;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:354,130:0.27:484
chr10	50025396	rs7097397	G	A	2990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.958;ClippingRankSum=0.000;DB;DP=628;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=1.376;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:446,181:0.29:627
chr10	50030730	rs10857651	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr10	50031212	rs113439641	CT	C	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=1.474;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:222,49:0.18:271
chr10	50038720	rs3747875	G	T	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	50038800	rs3747874	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.456;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.728;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr10	50040562	rs3747873	A	G	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:284,121:0.30:405
chr10	50040610	rs3747872	T	G	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:441,182:0.29:623
chr10	50075216	rs56031039	A	AAAAAT,AAAAATAAAAT	689.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	0/1:0.88:17
chr10	50075461	rs2663019	G	A	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,7:0.21:33
chr10	50083111	rs2620881	T	C	1379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=1.106;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:194,88:0.31:282
chr10	50085267	rs1904595	C	G	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-2.054;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr10	50108145	rs2671693	G	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	50109902	rs2663046	G	A	4312.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	50110015	rs7068839	A	T	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr10	50121784	rs10776653	T	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:130,71:0.35:201
chr10	50122181	rs7094610	C	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr10	50149674	rs2671717	A	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	50154768	rs2663066	A	T	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	50155036	rs113307003	T	TAC	599.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.826;QD=11.76;ReadPosRankSum=1.138;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr10	50165128	rs3829206	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,54:0.74:73
chr10	50165411	rs3750867	T	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=2.055;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr10	50167621	rs10776660	A	G	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr10	50167952	rs4317902	C	G	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	50184949	rs2271565	C	T	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:68,132:0.66:200
chr10	50186317	rs2292585	G	A	2168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=2.074;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:215,123:0.36:338
chr10	50186415	rs2292584	C	T	3724.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:80,165:0.67:245
chr10	50190923	rs61366126	G	GA,GAA	1255.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=0.383;SOR=0.651;set=HC	GT:AD:AF:DP	1/2:7,52,16:0.69,0.21:75
chr10	50227785	rs1913525	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	50227870	rs1913524	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	50227927	rs1913523	C	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	50272761	.	A	G	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=0.054;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:59,30:0.34:89
chr10	50315893	rs13088	A	G	8235.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:220,369:0.63:589
chr10	50339925	rs12765281	G	A	3925.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:85,170:0.67:255
chr10	50340304	rs17773851	C	A	5173.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:84,222:0.73:306
chr10	50341954	rs34110351	A	G	2755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.28;ReadPosRankSum=0.389;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:67,126:0.65:193
chr10	50374930	rs45563932	C	T	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:93,222:0.70:315
chr10	50530724	rs151171891	A	G	2936.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:44,127:0.74:171
chr10	50531604	rs7093235	T	C	6203.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	50532683	rs7921186	T	C	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	50533617	rs2377940	T	C	14175.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr10	50533776	rs10857471	C	G	5310.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:100,242:0.71:342
chr10	50534599	rs10857472	G	A	8167.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:199,369:0.65:568
chr10	50534862	rs12411843	T	C	1700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.045;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:215,102:0.32:317
chr10	50534969	rs66701434	A	AACACACACACAC	1966.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;QD=46.83;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr10	50535186	rs71500272	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.326;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.536;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr10	50594509	rs12261515	C	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr10	50681033	rs2229760	G	A	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:116,53:0.31:169
chr10	50686600	.	T	TA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=-1.107;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr10	50691360	rs4253162	T	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=2.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-1.187;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:165,60:0.27:225
chr10	50701156	rs4253132	G	A	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:98,55:0.36:153
chr10	50723684	rs4253073	G	A	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:282,125:0.31:407
chr10	50724016	rs4253072	C	T	7594.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	50740861	rs80133923	C	T	7383.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:179,310:0.63:489
chr10	50740876	rs2228524	G	C	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:317,188:0.37:505
chr10	50818762	rs1880675	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	50820345	rs8187730	C	A	17055.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:1,629:1.00:630
chr10	50822192	rs7903315	G	C	261.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	50822226	rs7923716	T	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	50824117	rs1880676	G	A	1137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.459;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:132,66:0.33:198
chr10	50824619	rs3810950	G	A	2385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-1.125;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:360,147:0.29:507
chr10	50828506	rs1880677	G	A	8863.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	50833839	rs868750	G	A	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,49:0.73:67
chr10	50856652	rs4838544	G	A	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	50856772	rs10580502	TAC	T	611.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.48;ReadPosRankSum=-0.214;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr10	50857835	rs1917813	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	50863083	rs12264845	A	C	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	50863147	rs8178992	T	C	11062.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr10	50863565	rs7076926	C	T	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	50887651	rs1153781	G	C	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	50901809	rs1153797	T	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	50916484	rs1258236	A	G	4654.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	50943186	rs1258256	C	T	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	50944009	rs1258257	T	C	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	50944021	rs41281969	A	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,59:0.79:75
chr10	50944613	rs1258258	C	T	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	50947918	rs1258259	A	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	50952851	rs1268723	C	T	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	50960209	rs1258184	G	A	11983.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:1,458:1.00:459
chr10	51124153	rs2664655	T	G	5003.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	51537292	rs4131357	C	A	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr10	51539745	rs35494443	AC	A	581.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,23:0.57:40
chr10	51539762	rs10763588	G	T	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr10	51540291	rs11006274	T	C	1974.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr10	51549496	rs10993994	T	C	3752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.90;ReadPosRankSum=0.910;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:91,179:0.66:270
chr10	51549545	rs4935176	G	T	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	51568533	rs34282889	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.73;ReadPosRankSum=-0.000;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	51603257	.	TA	T	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.85;MQRankSum=-0.738;QD=3.99;ReadPosRankSum=0.901;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr10	51620317	rs200147310	A	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.174;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.61;MQRankSum=-1.209;QD=8.82;ReadPosRankSum=-0.469;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr10	51620499	rs78584401	G	A	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.75;MQRankSum=-4.025;QD=7.78;ReadPosRankSum=-1.553;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr10	51623004	rs201547968	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:59,52:0.47:111
chr10	51623014	.	GA	G	1535	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=10;HapScore=1;MGOF=19;MMLQ=27;MQ=41.36;NF=26;NR=34;PP=1535;QD=25.7833333333;SC=TGCCAGCAAGGAAAAAAAAAA;SbPval=0.57;Source=Platypus;TC=135;TCF=59;TCR=76;TR=60;WE=51623032;WS=51622994;set=Platypus	GT:AD:AF:DP	1/0:75,60:0.44:135
chr10	51623024	rs146205287	A	C	1608.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-8.718;QD=9.19;ReadPosRankSum=1.897;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:94,81:0.46:175
chr10	51623024	.	A	AC	1903	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=9;HapScore=1;MGOF=19;MMLQ=28;MQ=41.42;NF=28;NR=35;PP=1903;QD=30.3968253968;SC=GAAAAAAAAAACAACAACATA;SbPval=0.49;Source=Platypus;TC=137;TCF=59;TCR=78;TR=63;WE=51623032;WS=51622994;set=Platypus	GT:AD:AF:DP	1/0:74,63:0.46:137
chr10	51623052	rs143647852	C	CT	4751.73	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:156,121:0.44:277
chr10	51623061	rs115719811	G	A	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:180,139:0.44:319
chr10	51623147	rs373071373	C	T	1612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-9.016;QD=8.86;ReadPosRankSum=-2.011;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:99,83:0.46:182
chr10	51623174	rs141118546	C	A	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.263;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.74;MQRankSum=-6.471;QD=6.91;ReadPosRankSum=0.291;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:60,39:0.39:99
chr10	51623190	rs137912947	T	C	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.669;MLEAC=1;MLEAF=0.500;MQ=45.38;MQRankSum=-4.193;QD=7.43;ReadPosRankSum=0.755;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr10	51623647	rs377343859	CG	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.817;MLEAC=1;MLEAF=0.500;MQ=42.02;MQRankSum=-3.224;QD=8.06;ReadPosRankSum=1.611;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	51623866	rs374725846	A	G	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.78;MQRankSum=-1.554;QD=8.75;ReadPosRankSum=-1.693;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:37,32:0.46:69
chr10	51631812	rs200391397	A	G	5068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=545;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=47.44;MQRankSum=-8.037;QD=9.30;ReadPosRankSum=-1.381;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:291,254:0.47:545
chr10	51632906	rs146420399	G	A	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.293;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=8.140;MLEAC=1;MLEAF=0.500;MQ=46.31;MQRankSum=-8.397;QD=8.62;ReadPosRankSum=1.005;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:74,50:0.40:124
chr10	51632971	rs200644678	A	G	3740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.350;ClippingRankSum=0.000;DB;DP=429;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=47.30;MQRankSum=-11.938;QD=8.72;ReadPosRankSum=-1.776;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:227,202:0.47:429
chr10	51633027	rs115081809	T	C	4737.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:277,257:0.48:534
chr10	51827934	rs55875820	G	A	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.717;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.401;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-1.958;QD=4.05;ReadPosRankSum=-0.133;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr10	51859758	rs200416566	A	G	124.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.30;MQRankSum=1.593;QD=12.48;ReadPosRankSum=1.282;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	51974489	.	T	C	299.77	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.99;QD=24.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	51974685	rs201931325	C	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.54;QD=28.64;SOR=2.267;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	52008140	rs7071083	C	T	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	52067157	rs41274642	T	C	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr10	52070947	rs2251601	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.78;ReadPosRankSum=-0.253;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	52086939	rs2246994	C	G	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:217,96:0.31:313
chr10	52088004	rs12358176	C	T	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr10	52103707	rs10763354	A	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr10	52576068	rs4245008	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	52751070	rs79957958	A	AGCC	1771.90	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:7,77:0.92:84
chr10	53814229	rs1904010	G	T	5215.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr10	53814383	rs12778630	C	T	5509.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	53841337	rs1904024	A	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	53841639	rs5784902	AG	A	236.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	53893539	rs17642863	A	T	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr10	53921754	rs10824173	C	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	54050079	rs10762675	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr10	54074757	rs2241529	A	G	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:140,93:0.40:233
chr10	54076271	rs1569198	A	G	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:209,110:0.34:319
chr10	54528266	rs930507	G	C	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.641;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:124,42:0.25:166
chr10	54528298	rs930508	G	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.695;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-2.023;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:92,26:0.22:118
chr10	54528353	rs930509	C	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.551;SOR=1.554;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chr10	54530636	rs1982266	A	G	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr10	54530694	rs1982267	G	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	55585030	.	CA	C	28	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=8;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=28;QD=22.5;SC=GTACGTATATCAAAAAAAAGG;SbPval=1.0;Source=Platypus;TC=7;TCF=1;TCR=6;TR=2;WE=55585038;WS=55585020;set=Platypus	GT:AD:AF:DP	0/1:5,2:0.29:7
chr10	55588137	rs4570494	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.245;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.22;ReadPosRankSum=0.163;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr10	55617177	rs7083307	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	55663198	rs10740559	A	C	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.376;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr10	55663202	rs2593124	T	C	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.386;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr10	55719652	rs2593107	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,40:0.37:108
chr10	55755491	rs2135720	C	T	1341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=-1.979;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:138,78:0.36:216
chr10	55779915	rs3812658	G	A	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:35,69:0.66:104
chr10	55826470	rs3812657	A	G	1617.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr10	55838950	rs1911433	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr10	55892600	.	TAC	T	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=4.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.305;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:83,14:0.14:97
chr10	55943184	rs7093302	T	C	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr10	55955485	rs7921598	A	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:171,76:0.31:247
chr10	55955610	rs10825269	C	T	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:120,63:0.34:183
chr10	55973889	rs10763086	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	55996761	rs721825	C	T	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	56076975	rs10763098	A	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr10	56077209	rs10740579	G	A	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	56089166	rs11004239	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	56089223	rs11004240	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	56089263	rs857395	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	56129066	rs11594958	A	G	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,47:0.45:105
chr10	56287689	rs10825347	A	C	1706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=-1.348;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:33,79:0.71:112
chr10	56335031	rs7070334	A	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	56335067	rs7070440	A	G	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	56335099	rs10825362	C	T	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	56335273	rs7086121	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	56345303	rs4570492	T	C	2884.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	56345335	rs2026413	T	C	3627.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	56345378	rs11396767	T	TG	3159.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:9,145:0.94:154
chr10	56345425	rs2026412	G	A	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	56345491	rs2026411	C	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	56345511	rs2026410	A	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	56423968	rs11004439	A	C	986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.824;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:174,70:0.29:244
chr10	58118630	rs2241666	T	C	8943.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:178,413:0.70:591
chr10	58119976	rs3861049	G	A	8371.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr10	59064371	rs1275284	C	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	59956481	rs202113550	C	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-1.309;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr10	59958956	rs1769044	C	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=0.847;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr10	59975743	rs2790146	A	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.199;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.119;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	59987071	.	G	GT	33	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=33;QD=38.0;SC=GAGTAACTATGTATTTAGAGT;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=2;WE=59987079;WS=59987061;set=Platypus	GT:AD:AF:DP	0/1:3,2:0.40:5
chr10	59997644	rs2790217	A	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr10	60027122	rs1339580	C	T	1250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.661;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:147,73:0.33:220
chr10	60029163	rs1416763	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:97,41:0.30:138
chr10	60036815	rs2254775	A	G	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.079;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.206;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:153,45:0.23:198
chr10	60095143	rs1905456	T	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	60123486	rs73288305	A	G	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,27:0.37:73
chr10	60124780	rs56895589	T	C	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-0.459;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	60127574	rs58516265	GT	G	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr10	60145342	rs1937	G	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:165,97:0.37:262
chr10	60145842	rs3830273	GTC	G	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.61;ReadPosRankSum=0.149;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	60160134	rs10714264	TA	T	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.703;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr10	60160226	rs2170778	G	A	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-1.424;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:77,30:0.28:107
chr10	60548220	rs200873651	C	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.228;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:13,29:0.69:42
chr10	60558125	rs2393503	A	T	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:57,126:0.69:183
chr10	60559047	rs2893789	G	C	487.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr10	60563062	rs4245600	G	C	998.94	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:6,44:0.88:50
chr10	60566137	rs3740451	G	A	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr10	60573753	rs9416746	G	T	6117.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:141,280:0.67:421
chr10	60577393	rs4344442	T	C	3360.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:74,152:0.67:226
chr10	60588553	rs4948550	T	C	2590.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:55,120:0.69:175
chr10	60996453	rs10763600	G	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	61005244	rs2452505	G	C	9532.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr10	61007534	rs1459996	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	61007592	rs2446724	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	61014056	rs1903252	C	A	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	61062538	rs72808548	T	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:134,69:0.34:203
chr10	61083690	rs34090373	A	AGTTG	1241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.909;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:105,37:0.26:142
chr10	61111975	rs284606	G	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	61112161	rs143861434	G	A	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr10	61120972	.	G	GT	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=1.992;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.038;QD=1.27;ReadPosRankSum=-0.341;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr10	61122268	rs3078330	T	TTA	2794.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	61413353	rs12356193	A	G	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:7,20:0.74:27
chr10	61414011	rs2242206	G	T	1785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.652;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:387,127:0.25:514
chr10	61414176	rs56370926	G	A	4785.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:88,208:0.70:296
chr10	61443808	rs1171660	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:77,49:0.39:126
chr10	61564020	rs3841635	CTT	C	3226.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	61574357	.	AAC	A	873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=2.182;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.762;QD=3.97;ReadPosRankSum=-0.967;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:166,54:0.25:220
chr10	61592447	rs6479653	G	C	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	61592547	rs6479654	A	G	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	61612466	rs3215226	TA	T	313.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr10	61718147	.	CTATTTGCATCTTTCCCAATTCCTCAGGTTGACAGATCCA	C	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.462;ClippingRankSum=0.000;DP=606;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.355;QD=1.15;ReadPosRankSum=2.128;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:437,78:0.15:515
chr10	61802342	rs2393603	C	A	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr10	61802353	rs2393604	A	T	6346.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	61802374	rs2393605	AA	TT	13993.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	61802550	rs9888033	A	T	7457.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	61802561	rs2393607	G	T	6312.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	61802577	rs5785427	T	TC	5274.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	61819049	rs10733757	T	G	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	61823109	rs4568956	A	G	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	61844308	rs76589554	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr10	61871430	rs10821675	C	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	61871598	rs4369346	A	G	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr10	61893898	rs3213829	T	G	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	61900356	rs6479694	A	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	61941023	rs78684076	T	A	199.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=-1.048;SOR=0.101;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr10	61962651	rs6479699	C	T	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	61965625	rs2297979	A	G	5853.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	62039654	rs1380451	G	C	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	62375046	rs16915231	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	62375148	rs60626709	T	TA	131.75	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	62548098	rs2456772	G	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr10	62551815	rs3212319	GC	G	1050.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:99,37:0.27:136
chr10	62551889	rs2456777	AA	GT	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.258;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.679;QD=8.47;ReadPosRankSum=-0.472;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr10	62553763	rs1871446	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-0.144;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr10	62634621	rs2279942	C	T	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	62634839	rs12251212	G	A	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:172,82:0.32:254
chr10	62652863	rs11304357	TA	T	152.50	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr10	63170292	rs7083475	A	G	14513.77	.	AC=1;AF=0.500;AN=2;DB;DP=942;set=Intersection	GT:AD:AF:DP	0/1:292,646:0.69:938
chr10	63175677	rs12766100	A	T	229.78	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr10	63422754	rs151189963	G	GGGGCCGACCCCGGCA	9911.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	63519674	rs2588915	G	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:34,67:0.66:101
chr10	63520698	rs1992625	T	C	1869.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:30,83:0.73:113
chr10	63699895	rs7073837	A	C	4453.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	63700228	rs4360655	A	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	63700245	rs4562771	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	63817096	rs34466257	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr10	63944176	rs3125730	A	C	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	63958112	rs3125734	T	C	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	63964653	rs41274060	C	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:82,44:0.35:126
chr10	63974950	rs4559572	C	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	63976912	rs149331212	TAGCTTC	T	2739.73	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:236,84:0.26:320
chr10	63977011	rs148142088	GAAAAA	G	9170.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=40.58;SOR=1.471;set=HC	GT:AD:AF:DP	1/1:1,225:1.00:226
chr10	63977069	rs1432414	A	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	63978077	rs11355398	GA	G	626.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.745;MLEAC=2;MLEAF=1.000;MQ=60.50;MQRankSum=0.429;QD=16.94;ReadPosRankSum=-0.101;SOR=0.262;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr10	63982984	rs10740069	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	63995983	rs3852448	C	T	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr10	64000878	rs1368158	T	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	64001114	rs1368157	T	C	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	64005582	rs34205992	T	TA	117.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	64005586	rs28515713	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	64005711	rs3815999	C	T	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	64019037	rs10675790	A	ATAAAT	1512.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	64136751	rs1873686	G	C	100.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	64148125	rs3852424	C	A	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	64148369	rs2893897	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	64159333	rs3758490	G	T	8101.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	64564892	rs2236295	G	T	763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=0.498;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:67,42:0.39:109
chr10	64564934	rs10995311	C	G	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.105;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=0.906;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:132,71:0.35:203
chr10	64573771	rs224083	C	T	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	64893433	rs2175197	T	C	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,20:0.36:55
chr10	64944317	rs10740107	T	A	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	64945364	rs3211105	G	A	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	64953311	rs4747098	G	A	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	64953959	rs2306264	C	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.341;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	64960536	rs10465990	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr10	64967445	rs1904294	A	T	11102.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr10	64967950	rs139722368	ACTAAAC	A	7343.73	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:115,184:0.62:299
chr10	64974380	rs41274074	G	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr10	64974537	rs10761725	A	T	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr10	65139865	.	ATT	A	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.98;ReadPosRankSum=-2.336;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	65139945	rs7477425	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	65225244	rs1061259	GA	CG	9052.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	65225450	rs1054693	C	T	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:430,194:0.31:624
chr10	65281137	rs377532429	T	C	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.88;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	65322464	rs36027145	A	ATCAG	2308.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=3.789;QD=11.37;ReadPosRankSum=-0.082;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:135,68:0.33:203
chr10	65379304	rs35995927	G	A	385.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.137;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:54,24:0.31:78
chr10	65383515	.	A	ATGTGTG	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.19;ReadPosRankSum=-0.480;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	65928826	rs10740151	T	C	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,190:0.99:191
chr10	67726514	rs2105702	A	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:42,84:0.67:126
chr10	68040325	rs4548513	C	T	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr10	68381349	rs111590769	C	CA	176.79	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr10	68535082	rs5785786	C	CT	2400.73	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:67,120:0.64:187
chr10	68685929	rs7902006	G	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:145,94:0.39:239
chr10	69366602	rs3750863	T	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr10	69583206	rs962608	G	A	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	69647332	rs932657	G	T	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	69648569	rs2236318	T	A	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr10	69651125	rs7896005	A	G	2284.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:47,98:0.68:145
chr10	69668014	rs10997870	G	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr10	69692330	rs3758392	T	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:36,109:0.75:145
chr10	69699478	rs142773200	GAT	G	39.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr10	69719074	rs7907843	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr10	69750213	rs11422655	G	GAA	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.730;QD=12.21;ReadPosRankSum=-0.797;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr10	69750621	rs189816883	C	A	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:81,148:0.65:229
chr10	69750788	rs5785841	GA	G	4245.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.50;MQRankSum=1.013;QD=17.26;ReadPosRankSum=-1.394;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:16,230:0.93:246
chr10	69755112	rs2308195	C	CCTAT	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	69773841	rs866255	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:157,78:0.33:235
chr10	69792721	rs3758393	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=1.068;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr10	69866657	rs11592680	T	C	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.724;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=0.836;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:169,80:0.32:249
chr10	69902549	rs3814180	T	C	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,17:0.71:24
chr10	69905300	rs2817760	G	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr10	69905415	rs2635993	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr10	69908241	rs2200897	G	A	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:85,150:0.64:235
chr10	69926097	rs2673794	T	C	7039.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:137,307:0.69:444
chr10	69926319	rs61854624	C	A	8170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=5.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=0.166;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:120,211:0.64:331
chr10	69926325	rs2673793	C	T	7883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=5.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.56;ReadPosRankSum=0.203;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:120,201:0.63:321
chr10	69934258	rs3814182	C	G	4031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=829;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=1.472;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:583,243:0.29:826
chr10	69934467	rs3814183	A	G	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	69934535	rs7917519	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	69935235	rs6480306	T	C	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	69948844	rs10733838	T	C	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	69961501	rs7913146	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	69961537	rs370818222	CA	C	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.531;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr10	69966392	rs3814185	T	G	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	69969986	rs10998022	C	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	70045201	rs7909365	C	A	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr10	70045264	rs3816299	A	C	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	70051810	rs3835100	A	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr10	70051928	rs10823171	A	G	4208.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	70056600	rs2394470	C	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	70056619	rs60698417	T	TA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.079;QD=0.58;ReadPosRankSum=-0.117;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:119,25:0.17:144
chr10	70099433	rs76636639	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	70105560	rs1162753	G	A	5975.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:132,280:0.68:412
chr10	70123243	rs10823183	G	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.052;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr10	70136566	rs41278508	G	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr10	70143774	rs7899885	C	T	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:54,69:0.56:123
chr10	70152683	.	CAAA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.233;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr10	70153014	rs11432212	C	CA	85.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr10	70166913	rs59831114	T	G	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	70167004	rs7098448	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr10	70174885	rs17460571	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-1.685;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr10	70179713	rs7912227	C	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:193,85:0.31:278
chr10	70179746	rs7897488	T	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:126,51:0.29:177
chr10	70190155	rs12221039	A	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	70191631	rs61855090	C	T	1984.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:210,114:0.35:324
chr10	70205920	rs61316500	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=2.069;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr10	70225504	rs3758626	G	T	1867.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:225,109:0.33:334
chr10	70227964	rs10998205	C	T	946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=2.976;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:160,62:0.28:222
chr10	70230475	rs10509302	G	C	554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=1.768;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:100,38:0.28:138
chr10	70231701	rs1535539	A	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:299,165:0.36:464
chr10	70263579	rs10823215	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr10	70266523	rs2275715	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:12,4:0.25:16
chr10	70266546	rs2275716	G	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	70276728	rs2664412	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	70332066	rs3814177	C	T	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	70332580	rs10823229	A	G	4589.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:144,212:0.60:356
chr10	70332672	rs12773594	T	A	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:162,97:0.37:259
chr10	70392319	rs10733844	G	A	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	70392375	rs1747	G	A	3940.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.16;QD=27.18;SOR=1.210;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	70405855	rs3998860	A	G	11794.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr10	70442868	rs11284778	GA	G	256.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	70481547	rs1616158	C	T	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	70497482	rs1162961	A	G	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	70497799	rs1149679	C	T	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	70502288	rs1300253	G	A	5514.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	70502426	rs1300252	T	C	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	70520636	rs58477996	CAAA	C	652.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;QD=28.38;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	70525591	rs1149688	G	A	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr10	70531217	rs10823258	C	T	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	70534744	rs1782323	A	C	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	70641860	rs1341667	T	C	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:140,56:0.29:196
chr10	70652272	rs4472827	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr10	70666271	rs72371573	AGGAAGGG	A	764.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr10	70669942	rs35271752	CA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=2.375;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr10	70695972	rs12260649	A	G	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:34,51:0.60:85
chr10	70696009	rs7084726	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	70696039	rs7084742	T	C	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr10	70696713	rs5030895	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	70696908	rs1539166	G	T	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	70700944	rs5030900	A	G	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=0.111;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:75,36:0.32:111
chr10	70716106	rs5030896	A	G	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	70722939	rs5030897	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.789;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr10	70722989	rs10998504	A	C	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr10	70725128	rs3898314	A	G	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=3.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-3.353;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:99,50:0.34:149
chr10	70733266	rs5030899	T	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr10	70734589	rs3740595	T	A	4604.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.36;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	70734599	rs5030902	A	T	2171.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.404;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.50;ReadPosRankSum=-0.200;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:3,98:0.97:101
chr10	70742192	rs2251911	T	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr10	70760366	rs2245679	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr10	70856852	rs2229498	G	A	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	70946101	rs71035072	G	GA	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	70962381	rs2279928	C	G	5292.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	70968199	rs4746821	G	T	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	70998738	rs4145930	G	A	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	71010026	rs4745978	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	71010375	rs5030948	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:159,80:0.33:239
chr10	71016609	rs78505997	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr10	71016947	rs2279930	C	G	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:64,110:0.63:174
chr10	71018660	rs1111335	T	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	71026510	rs906219	C	A	3769.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:81,172:0.68:253
chr10	71052083	rs4746836	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,84:0.67:125
chr10	71055232	rs2894081	T	C	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	71055459	rs4746837	T	C	2327.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	71055496	rs3812689	G	A	1634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.346;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.35;ReadPosRankSum=1.908;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,74:0.74:100
chr10	71060610	rs906220	A	G	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	71060621	rs1108272	C	T	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr10	71060634	rs906221	G	A	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	71060696	rs906222	G	A	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	71060707	rs906223	T	A	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	71098436	rs10578071	AGT	A	313.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.610;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.671;QD=22.41;ReadPosRankSum=1.037;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr10	71142183	rs4746846	G	A	9205.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr10	71142420	rs748235	G	A	4148.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:114,186:0.62:300
chr10	71144324	rs2305196	G	A	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:40,16:0.29:56
chr10	71144702	rs749105	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,37:0.77:48
chr10	71152091	rs2278745	T	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:45,96:0.68:141
chr10	71164655	rs2229170	C	T	5711.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:129,264:0.67:393
chr10	71168620	.	GCCAGCCCCCCGCCCCCTCCAGGCCCCGCCCCCT	G	849.73	.	AC=1;AF=0.500;AN=2;DP=46;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr10	71168685	rs55953810	A	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	71168945	rs1549797	C	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr10	71243323	rs10823396	C	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	71244832	rs2305201	C	A	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	71263991	rs5785921	G	GT	848.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	71264325	rs1652804	G	A	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	71267411	rs201904794	T	TG	136.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.837;SOR=0.296;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr10	71267412	rs1665583	T	G	667.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=4.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=0.178;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:20,45:0.69:65
chr10	71267416	.	T	G	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.264;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:50,18:0.26:68
chr10	71267417	rs3750790	T	G	667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=4.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.021;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:20,46:0.70:66
chr10	71332204	rs4536103	A	G	824.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.176;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=-2.115;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:195,56:0.22:251
chr10	71332842	rs144643855	CTG	C	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,30:0.48:63
chr10	71390393	rs977096	A	G	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=4.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=-0.677;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:142,52:0.27:194
chr10	71391538	rs1381932	T	C	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-1.758;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:195,86:0.31:281
chr10	71391707	rs2262274	C	T	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.130;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.150;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:83,23:0.22:106
chr10	71391719	rs144716370	C	CTGGGTAAGACT	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=0.430;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr10	71392495	rs2616089	T	A	1098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.52;ReadPosRankSum=0.128;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:97,32:0.25:129
chr10	71392501	rs2616088	G	C	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-1.368;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:107,42:0.28:149
chr10	71392557	rs12020	C	T	926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.900;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:185,64:0.26:249
chr10	71392692	rs1052152	T	C	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.606;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:199,84:0.30:283
chr10	71562437	rs10998973	G	A	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	71620388	rs10762320	G	A	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,43:0.42:102
chr10	71620403	rs10823443	G	A	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,52:0.41:127
chr10	71620436	rs67173564	A	AC	1976.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:106,72:0.40:178
chr10	71620671	rs4341432	C	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr10	71627527	rs139715885	C	T	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:68,110:0.62:178
chr10	71634969	rs59942449	G	A	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:144,87:0.38:231
chr10	71634986	rs59126631	A	T	1225.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:105,61:0.37:166
chr10	71637602	rs4746930	G	C	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr10	71647056	rs117142832	C	T	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr10	71647196	rs113746607	G	GT	714.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,49:0.74:66
chr10	71648002	rs41277956	C	T	2131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.023;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-2.015;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:61,103:0.63:164
chr10	71649046	rs10999015	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr10	71649309	rs2683572	A	G	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr10	71655210	rs141359979	CAT	C	745.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr10	71655443	rs1227744	G	A	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr10	71657102	rs41277958	A	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr10	71657272	rs1227746	A	G	18075.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr10	71658512	rs1227747	G	A	18627.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr10	71662783	rs942576	G	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	71664661	.	CTT	C	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.807;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.304;QD=6.93;ReadPosRankSum=1.308;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:44,35:0.44:79
chr10	71665676	rs2683575	G	C	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr10	71684530	rs1228671	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr10	71685532	rs1227778	G	C	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	71689645	rs2763339	T	G	1325.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	71689966	rs59283631	TG	T	1203.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	71689968	rs115514231	G	A	1212.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	71692556	rs7094009	C	G	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	71849772	rs16927265	A	G	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:330,158:0.32:488
chr10	71851429	rs72075869	CA	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.208;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=-0.892;SOR=1.442;set=HC	GT:AD:AF:DP	0/1:38,40:0.51:78
chr10	71859953	rs3750770	C	T	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:72,121:0.63:193
chr10	71868616	rs2271699	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	71874524	rs113675519	C	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr10	71874526	rs72807044	A	G	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr10	71874569	rs16927320	C	T	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:43,36:0.46:79
chr10	71874683	rs2271696	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:146,77:0.35:223
chr10	71874734	rs2271695	G	A	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.222;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:207,104:0.33:311
chr10	71874866	rs61736904	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:169,84:0.33:253
chr10	71874951	rs72807047	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:36,20:0.36:56
chr10	71876382	rs2394656	C	T	1170.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr10	71880190	rs2280201	T	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	71880757	rs4746962	A	C	8241.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr10	71880791	rs73273531	C	G	6447.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:163,306:0.65:469
chr10	71905569	rs3750774	C	A	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:44,106:0.71:150
chr10	71905695	rs10999158	A	G	2916.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:349,176:0.34:525
chr10	71906150	rs4746970	T	C	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:73,150:0.67:223
chr10	71921591	rs2271690	G	A	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.82;ReadPosRankSum=1.415;SOR=0.510;set=HC	GT:AD:AF:DP	0/1:13,38:0.75:51
chr10	71965960	.	T	C	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.905;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-1.173;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:81,41:0.34:122
chr10	71970259	rs3969945	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr10	71974468	rs7911572	C	T	1508.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	71989884	rs9415958	T	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	71990186	rs142621061	A	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.767;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.24;ReadPosRankSum=-0.425;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr10	71990196	rs7904074	G	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.88;ReadPosRankSum=-0.112;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr10	71993094	rs7077538	T	G	816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.633;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.416;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:163,55:0.25:218
chr10	72015409	rs10999212	C	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:241,88:0.27:329
chr10	72043389	rs1889394	T	G	16365.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr10	72061079	rs10740336	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	72061420	rs4746997	A	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	72083835	rs3750764	C	A	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,70:0.66:106
chr10	72136000	rs10999304	C	T	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	72164470	rs3750766	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	72179746	rs1043098	C	T	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:149,278:0.65:427
chr10	72181460	rs3793809	G	T	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	72195439	rs1904589	T	C	4481.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:120,207:0.63:327
chr10	72201219	rs10999338	G	A	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:38,68:0.64:106
chr10	72207517	rs34717077	AC	A	2576.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	72288964	rs60188579	GCCCCC	G	746.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=13.222;MLEAC=2;MLEAF=1.000;MQ=59.83;MQRankSum=0.000;QD=35.56;ReadPosRankSum=1.043;SOR=6.090;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr10	72289539	rs12785079	C	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	72290978	rs12773720	G	A	7163.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	72292258	rs10999378	G	C	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	72293713	rs12764399	C	T	9678.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr10	72298631	rs1122918	T	C	12820.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr10	72307053	rs67684173	T	C	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	72307214	rs7478096	C	A	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr10	72324143	rs7093516	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	72358577	rs885822	G	A	10214.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr10	72432438	rs373452188	AGGCGGCAGC	A	708.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr10	72432498	rs12762780	C	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	72432521	rs12762616	A	C	4509.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	72468584	rs117280157	C	G	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.335;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=2.207;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:24,35:0.59:59
chr10	72492155	rs41277996	G	C	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	72492212	rs2587478	T	C	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	72492244	rs10740357	A	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	72493876	rs10740358	T	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	72494778	rs12765664	G	A	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	72496375	rs1861517	A	G	2585.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	72500763	rs10823607	T	C	8538.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	72504920	rs10999505	C	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	72505208	rs7907248	A	G	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	72505243	rs7923892	T	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	72513635	rs12774070	C	A	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr10	72513682	rs2587475	C	T	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	72517837	rs6480463	C	T	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:53,97:0.65:150
chr10	72520259	rs61573157	C	T	4603.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:500,252:0.34:752
chr10	72520330	rs10823615	A	G	12672.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:284,580:0.67:864
chr10	72520567	rs10823616	A	G	7283.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:156,316:0.67:472
chr10	72533910	rs7077672	C	T	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	72535007	rs2254174	C	T	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	72536288	rs7897034	T	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.02;SOR=3.788;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	72536288	.	TGTGGT	CGTGGC,CGTGGT	776	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=4,6;NR=31,41;PP=776,63;QD=23.6990821389;SC=TTTGCTGCATTGTGGTAAGGT;SbPval=0.63;Source=Platypus;TC=48;TCF=6;TCR=42;TR=35,47;WE=72536301;WS=72536278;set=Platypus	GT:AF:DP	0/1:0.73:48
chr10	72536293	rs2254308	T	C	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.188;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.93;ReadPosRankSum=0.380;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:10,39:0.80:49
chr10	72536779	rs2254422	A	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	72536936	rs2254433	A	G	5224.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:123,235:0.66:358
chr10	72537450	rs2254445	T	C	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	72614421	rs2171157	T	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr10	72617256	rs2297842	A	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr10	72619205	rs827255	C	T	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,371:1.00:371
chr10	72633458	rs10762410	C	T	326.90	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr10	72635143	rs3998628	ATT	A	354.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.747;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=4.994;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.070;QD=3.25;ReadPosRankSum=0.431;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:88,21:0.19:109
chr10	72636450	rs923177	T	G	8396.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	72643671	rs9712	C	T	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	72648083	rs2854614	TC	GT	1643.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.605;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.320;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.95;ReadPosRankSum=-0.008;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:20,41:0.67:61
chr10	72648086	rs827239	A	G	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.65;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	72648134	rs827238	A	G	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr10	72813306	rs10762420	G	A	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr10	72813361	rs10740361	A	G	4548.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	73039860	rs4415677	C	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	73044382	rs10823716	T	A	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	73044413	rs10762434	G	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	73044580	rs12770025	G	A	18721.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,697:1.00:697
chr10	73044674	rs10999762	G	A	20218.77	.	AC=2;AF=1.00;AN=2;DB;DP=768;set=Intersection	GT:AD:AF:DP	1/1:0,765:1.00:765
chr10	73044924	rs7350453	A	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.97;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	73044930	rs7350455	C	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.13;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	73044954	rs6480503	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	73047593	rs7074280	G	A	11079.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr10	73050983	rs3740462	C	T	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	73053430	rs199714816	C	G	7308.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:155,315:0.67:470
chr10	73103904	rs41281300	C	G	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:34,101:0.75:135
chr10	73104056	rs2243540	A	G	8801.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:137,394:0.74:531
chr10	73111258	rs780667	G	T	2239.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:53,97:0.65:150
chr10	73111408	rs780668	C	T	7917.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:155,348:0.69:503
chr10	73115941	rs2252997	TG	CA	6779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.853;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.67;ReadPosRankSum=-1.273;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:77,168:0.69:245
chr10	73121645	rs2487067	C	A	1054.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr10	73121913	rs2487068	A	G	11589.77	.	AC=1;AF=0.500;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	0/1:341,545:0.62:886
chr10	73121945	rs1084004	T	C	12744.77	.	AC=1;AF=0.500;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	0/1:299,572:0.66:871
chr10	73157033	rs147915565	C	CCGAGG	3140.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:55,80:0.59:135
chr10	73199501	rs4747153	C	A	3633.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:55,165:0.75:220
chr10	73269714	rs2297953	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr10	73270906	rs3802720	T	C	5624.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:125,264:0.68:389
chr10	73270982	rs3802719	G	A	6069.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:88,171:0.66:259
chr10	73270995	rs3802718	A	G	5537.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:66,135:0.67:201
chr10	73326757	rs7087735	C	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	73330454	rs736717	G	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr10	73337850	rs6480531	G	A	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:84,107:0.56:191
chr10	73377314	rs7903772	C	G	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	73403490	rs10823810	A	G	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr10	73406599	rs2305210	G	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr10	73406636	rs11598249	C	T	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	73439066	rs3802717	A	T	6837.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr10	73439101	rs1227042	T	C	14860.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr10	73455201	rs3752752	T	C	19986.77	.	AC=2;AF=1.00;AN=2;DB;DP=784;set=Intersection	GT:AD:AF:DP	1/1:0,784:1.00:784
chr10	73455273	rs3752751	T	C	11447.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	73455308	rs3752750	T	C	6378.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	73472868	rs2394838	C	G	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr10	73472882	rs2166631	C	T	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	73483645	rs3802713	C	T	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	73492079	rs1227065	A	G	17265.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr10	73494159	rs1227062	T	A	3328.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	73494229	rs1227061	T	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	73494288	rs55724553	G	A	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.891;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:162,52:0.24:214
chr10	73499561	rs10762474	C	G	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.434;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:137,46:0.25:183
chr10	73501374	rs1227052	C	T	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr10	73501556	rs1227051	G	A	17198.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr10	73515103	rs3747858	G	T	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	73520391	rs10999987	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	73520632	rs3747869	A	C	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	73521371	rs3747867	C	T	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	73533220	rs190144328	A	G	1882.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:216,107:0.33:323
chr10	73537388	rs7917781	T	C	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	73537821	rs10999996	G	T	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr10	73537852	rs140278102	C	T	3238.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:73,144:0.66:217
chr10	73537978	rs10762480	C	T	11613.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr10	73538109	rs10740390	C	G	3527.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr10	73538896	rs6480555	T	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr10	73544086	rs3802711	G	A	5624.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:112,245:0.69:357
chr10	73544604	rs7068810	T	C	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:36,83:0.70:119
chr10	73545236	rs3802709	G	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,35:0.39:89
chr10	73550117	rs11592462	C	G	2364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.702;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:406,155:0.28:561
chr10	73550969	rs10466026	G	A	7066.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:159,317:0.67:476
chr10	73558030	rs7068357	G	A	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:78,107:0.58:185
chr10	73558852	rs4747193	A	G	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:54,104:0.66:158
chr10	73558886	rs4747194	G	A	4205.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:79,181:0.70:260
chr10	73558952	rs4747195	C	T	7708.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:160,344:0.68:504
chr10	73562538	rs12773941	C	T	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,51:0.69:74
chr10	73562744	rs10823849	G	A	8607.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:179,378:0.68:557
chr10	73566203	rs4747197	T	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:49,73:0.60:122
chr10	73570334	rs11818398	G	A	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:78,177:0.69:255
chr10	73571581	rs140848302	C	CCT	3549.73	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:40,89:0.69:129
chr10	73576307	rs7869	C	T	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:79,157:0.67:236
chr10	73578503	rs885828	G	A	1595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.64;ReadPosRankSum=-0.579;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:31,71:0.70:102
chr10	73578672	rs749823	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr10	73578882	rs4747203	T	C	5330.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:94,250:0.73:344
chr10	73579217	rs11000016	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chr10	73579405	rs3747860	C	T	6575.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:170,297:0.64:467
chr10	73579787	rs12769743	A	T	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	73581560	rs2070968	A	T	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:67,181:0.73:248
chr10	73583520	rs2249814	G	C	2327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.874;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.595;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=0.791;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:38,103:0.73:141
chr10	73591829	rs41306532	G	A	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr10	73594358	rs3878001	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:34,18:0.35:52
chr10	73610982	rs2070188	G	A	4196.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:127,195:0.61:322
chr10	73765773	rs11000129	T	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=2.069;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	73767859	rs3740129	G	A	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	73822507	rs1530803	C	T	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr10	73822957	rs1530802	G	A	2739.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:61,118:0.66:179
chr10	73823019	rs1668172	A	G	1102.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr10	73824170	rs2242250	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr10	73824181	rs2242251	C	G	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	73824203	rs2242252	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	73827292	rs1530804	A	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	73832438	rs10574710	CCT	C	11154.73	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:183,290:0.61:473
chr10	73832579	rs9663960	A	G	4684.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:104,199:0.66:303
chr10	73832859	rs896074	C	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr10	73912824	rs41282252	C	T	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr10	73964004	rs4237336	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	73970451	rs7069703	G	T	7082.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	74096385	rs41282264	G	A	931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=0.119;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:113,59:0.34:172
chr10	74100642	rs9416018	G	A	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:49,64:0.57:113
chr10	74139200	rs11000276	T	G	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=-0.299;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:73,103:0.59:176
chr10	74182917	rs10823922	T	C	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,105:0.74:142
chr10	74183251	rs7069357	G	A	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	74234817	rs915432	T	C	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:27,40:0.60:67
chr10	74235192	rs5786077	A	AT	67.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.53;ReadPosRankSum=0.812;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	74235771	rs11000322	G	A	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr10	74237247	rs35126406	C	CT	1102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=0.047;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:144,47:0.25:191
chr10	74268031	rs3793927	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr10	74293584	rs10509343	A	T	1139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-1.071;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:13,31:0.70:44
chr10	74293601	rs11818304	T	A	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr10	74452931	rs112298026	AGT	A	206.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr10	74671352	rs148311247	A	C	619.10	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,26:0.90:29
chr10	74671611	rs3750736	C	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=1.716;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:62,23:0.27:85
chr10	74695287	rs2461917	T	C	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	74769729	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.073;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=10.011;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=1.871;SOR=2.820;set=HC	GT:AD:AF:DP	0/1:54,19:0.26:73
chr10	74874097	.	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.438;SOR=1.210;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr10	74885409	rs147542387	T	TTA	62.25	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	74906122	.	TA	T	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.663;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:120,35:0.23:155
chr10	75135833	.	TA	T	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.460;QD=1.13;ReadPosRankSum=-0.010;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:102,29:0.22:131
chr10	75184444	rs11591720	A	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:117,46:0.28:163
chr10	75185459	.	T	G	803.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,33:0.77:43
chr10	75283631	rs141803742	T	TTTA	400.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=40.07;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	75490217	rs11814282	T	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.51;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	75506499	rs41280408	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr10	75519322	rs10740418	T	C	8245.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr10	75525999	rs3849969	A	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr10	75526756	rs41280410	C	T	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr10	75532848	rs145929404	GCCAGGACTCCAGGTGTCCAGGACTCCAGGTGT	G	2100.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	75545251	rs12256103	A	G	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	75558867	rs2271271	G	A	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	75559662	rs141230821	C	CTCTA	2940.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:3,132:0.98:135
chr10	75562161	rs13013	C	A	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	75607696	rs67135801	CA	C	3545.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	75612881	rs2250140	T	C	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	75620757	rs2664282	T	C	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr10	75632760	rs2675671	C	T	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	75672607	rs61567551	C	CA	366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.414;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr10	75673101	rs2227564	T	C	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.542;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:217,102:0.32:319
chr10	75673731	rs2227566	C	T	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.525;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:83,58:0.41:141
chr10	75674740	rs2227571	C	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:139,51:0.27:190
chr10	75832703	.	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.000;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr10	75863750	rs2270552	C	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	75865065	rs767809	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	75866929	rs2131957	C	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	75871735	rs2131956	C	G	6587.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.278;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.25;ReadPosRankSum=-0.619;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:1,250:1.00:251
chr10	75874166	rs372451454	CGT	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.077;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chr10	75874192	rs28639484	T	C	1192.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:1,49:0.98:50
chr10	75889760	rs35456205	GA	G	2397.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:5,121:0.96:126
chr10	75896601	rs10762576	A	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	75936611	rs10824095	C	T	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	76158177	rs2126763	C	T	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	76360022	rs11001078	T	C	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr10	76429870	rs10740443	T	C	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	76719679	rs4746249	C	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr10	76729632	rs3213967	C	T	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:96,51:0.35:147
chr10	76781905	rs71929101	GGAA	G	4044.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.654;QD=12.84;ReadPosRankSum=-0.456;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:200,115:0.37:315
chr10	76790935	rs60760167	T	TA	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.719;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=1.406;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:33,14:0.30:47
chr10	76803504	.	T	TCGGGGCGGGG	853.73	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr10	76818077	rs11594934	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr10	76861828	rs35369821	A	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.55;ReadPosRankSum=0.055;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:50,28:0.36:78
chr10	77191441	rs55922628	C	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,33:0.92:36
chr10	77312184	rs1367290	C	T	3644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.029;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.970;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:218,228:0.51:446
chr10	77795995	rs4745806	C	T	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr10	77807027	rs1898071	T	C	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr10	77807092	rs1898070	A	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr10	77818594	rs7924288	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr10	78649399	rs2288840	C	T	6795.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr10	78729669	rs2288837	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	78734056	rs41274570	G	A	55.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.16;ReadPosRankSum=-0.674;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr10	78778734	rs16934182	G	A	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	78782876	rs7078109	T	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	78839127	rs139730603	A	AGTGT,AGT	849.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/1:1.00:18
chr10	78844579	rs34592624	G	GA	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.774;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.144;QD=3.29;ReadPosRankSum=-0.957;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr10	78868165	rs138226779	CAAA	C	5158.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:3,154:0.98:157
chr10	78880943	rs7907270	A	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr10	78944590	rs1131824	G	A	3655.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:49,164:0.77:213
chr10	78977052	.	C	CA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.242;QD=1.97;ReadPosRankSum=0.380;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr10	78977190	rs16934368	A	C	5169.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:133,232:0.64:365
chr10	79163867	rs596832	G	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	79396401	rs35528388	AC	A	1232.73	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:91,53:0.37:144
chr10	79396463	rs12217221	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr10	79552107	rs1058203	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,9:0.27:33
chr10	79552151	rs1058202	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=1.153;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr10	79553673	rs2812425	T	C	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:172,87:0.34:259
chr10	79553688	rs2579150	G	A	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:226,118:0.34:344
chr10	79571893	rs1248625	C	G	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:118,51:0.30:169
chr10	79575879	rs1248638	A	G	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:93,62:0.40:155
chr10	79579047	rs1248635	A	G	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:241,98:0.29:339
chr10	79579222	rs1248634	G	A	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,29:0.41:70
chr10	79584178	rs1248629	G	C	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:112,56:0.33:168
chr10	79588534	rs2801822	C	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:92,36:0.28:128
chr10	79588620	rs66642452	GCTCCAGC	G	4714.73	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:243,133:0.35:376
chr10	79590726	rs1248663	C	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr10	79595417	rs1248661	C	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	79595473	rs1781797	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:44,18:0.29:62
chr10	79606441	rs1248676	A	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr10	79606454	.	C	CA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=0.44;ReadPosRankSum=1.516;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:147,28:0.16:175
chr10	79614189	rs1248692	A	G	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:147,71:0.33:218
chr10	79616605	rs1248696	T	C	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	79628875	rs1248655	A	G	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,27:0.28:98
chr10	79629085	rs1248656	G	A	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr10	79629127	rs1248657	T	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr10	79777204	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.177;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:28,9:0.24:37
chr10	79779150	rs1863898	G	A	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:10,15:0.60:25
chr10	79793688	rs3740253	C	T	8061.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:170,368:0.68:538
chr10	80288406	rs1865706	T	G	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr10	80310465	rs2670191	T	C	4691.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	80310636	rs7090749	G	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr10	80762019	.	AAAGG	A	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=0.420;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	80762027	.	GAAA	G	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=0.577;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr10	80763382	rs10762828	C	T	3596.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:55,163:0.75:218
chr10	80763534	rs10762829	A	G	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,43:0.61:70
chr10	80961519	rs2802371	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.843;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr10	81037229	rs1250539	G	A	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	81045207	rs1250569	T	C	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	81045280	rs1250568	T	C	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	81053475	rs1250560	G	A	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	81053560	rs1250559	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	81058027	rs1250552	A	G	4608.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	81060474	rs1250549	T	C	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.50;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	81060829	rs1782648	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	81065201	rs1250558	G	A	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	81065774	rs1250557	G	T	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	81067480	rs1972346	C	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	81072523	rs2802359	G	C	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:204,105:0.34:309
chr10	81073763	rs2997468	GG	CA	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=10.080;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=-0.354;SOR=0.049;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr10	81074125	rs1782652	T	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:32,10:0.24:42
chr10	81266411	rs1010929	T	C	8645.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:175,368:0.68:543
chr10	81267249	rs11516648	G	A	9349.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:195,409:0.68:604
chr10	81267401	rs11510994	A	G	8542.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:192,377:0.66:569
chr10	81267463	rs11516649	T	G	6725.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:144,292:0.67:436
chr10	81267591	rs1250778	C	T	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr10	81270255	.	C	A	2115.77	.	AC=1;AF=0.500;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	0/1:38,98:0.72:136
chr10	81270479	.	G	A	80.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=43.16;MQRankSum=-1.282;QD=16.17;ReadPosRankSum=-0.524;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	81284599	rs145509447	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.793;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=12.805;MLEAC=1;MLEAF=0.500;MQ=49.18;MQRankSum=-2.078;QD=2.62;ReadPosRankSum=0.109;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr10	81284600	rs191784080	C	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=12.805;MLEAC=1;MLEAF=0.500;MQ=49.18;MQRankSum=-2.078;QD=2.62;ReadPosRankSum=-0.191;SOR=1.865;set=HC	GT:AD:AF:DP	0/1:30,5:0.14:35
chr10	81284783	rs148834254	C	G	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.638;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=22.695;MLEAC=1;MLEAF=0.500;MQ=48.93;MQRankSum=-4.329;QD=0.42;ReadPosRankSum=-2.659;SOR=3.119;set=HC	GT:AD:AF:DP	0/1:98,15:0.13:113
chr10	81284847	rs61860492	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=10.813;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=-2.529;QD=12.22;ReadPosRankSum=2.147;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:47,25:0.35:72
chr10	81284852	rs61860493	C	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=10.707;MLEAC=1;MLEAF=0.500;MQ=52.03;MQRankSum=-2.553;QD=12.39;ReadPosRankSum=2.442;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:46,25:0.35:71
chr10	81286427	rs1250961	G	C	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.491;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.055;MLEAC=1;MLEAF=0.500;MQ=54.34;MQRankSum=-6.896;QD=15.83;ReadPosRankSum=-1.163;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:42,42:0.50:84
chr10	81286437	rs1250960	T	G	1023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=7.503;MLEAC=1;MLEAF=0.500;MQ=53.51;MQRankSum=-7.563;QD=16.00;ReadPosRankSum=0.354;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:36,28:0.44:64
chr10	81317045	rs1965708	G	T	7009.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:124,306:0.71:430
chr10	81317292	rs1965707	G	A	2312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.93;MQRankSum=-3.329;QD=15.73;ReadPosRankSum=0.760;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:52,95:0.65:147
chr10	81317652	rs17886197	T	G	49.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr10	81318545	rs2217231	A	T	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:25,81:0.76:106
chr10	81318621	rs17884396	C	T	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:99,211:0.68:310
chr10	81318930	rs1250943	C	G	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr10	81319092	rs192907309	C	G	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:68,23:0.25:91
chr10	81319267	rs1650232	C	T	2005.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:51,86:0.63:137
chr10	81319423	rs1975008	C	T	2519.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:41,114:0.74:155
chr10	81319483	rs1975007	A	G	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;MQ=57.38;set=Intersection	GT:AD:AF:DP	0/1:29,87:0.75:116
chr10	81342290	rs61861056	T	C	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:44,42:0.49:86
chr10	81342369	rs34032311	G	T	1037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=7.386;MLEAC=1;MLEAF=0.500;MQ=55.28;MQRankSum=-11.766;QD=6.87;ReadPosRankSum=2.569;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:94,57:0.38:151
chr10	81343036	rs3855862	G	A	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:56,23:0.29:79
chr10	81343103	rs74456805	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr10	81370949	rs4253596	C	T	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr10	81372231	rs4253514	CG	C	3418.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:43,102:0.70:145
chr10	81374651	rs1250991	C	T	1782.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:72,84:0.54:156
chr10	81680241	rs34165190	A	G	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:56,89:0.61:145
chr10	81680308	rs3750876	G	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr10	81680976	rs2819107	A	G	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr10	81681454	rs2257414	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-0.579;QD=9.92;ReadPosRankSum=0.566;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	81681471	rs34674238	TC	T	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-0.812;QD=17.75;ReadPosRankSum=1.275;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	81681708	rs45614540	T	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,42:0.79:53
chr10	81682463	rs45550832	T	G	3148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.523;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-12.272;QD=17.89;ReadPosRankSum=-0.199;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:91,85:0.48:176
chr10	81682470	rs2475643	T	C	3034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=53.97;MQRankSum=-12.155;QD=18.28;ReadPosRankSum=-0.120;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:87,79:0.48:166
chr10	81682640	rs41314475	C	T	7425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-4.395;QD=26.06;ReadPosRankSum=-0.378;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:100,185:0.65:285
chr10	81682645	rs1054053	A	G	7590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.920;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-4.362;QD=25.22;ReadPosRankSum=-0.563;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:105,196:0.65:301
chr10	81682742	rs76156413	G	A	4577.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:113,203:0.64:316
chr10	81698097	rs2819098	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr10	81700574	rs12784549	C	G	1392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.48;ReadPosRankSum=-0.143;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:24,66:0.73:90
chr10	81701129	rs17882375	C	T	3212.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:77,143:0.65:220
chr10	81701722	rs2243639	T	C	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:41,114:0.74:155
chr10	81706324	rs721917	A	G	4078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=0.478;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:85,194:0.70:279
chr10	81841692	rs1932574	G	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr10	81901722	rs745182	C	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr10	81904638	rs2819874	G	A	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr10	81915790	rs2789687	T	C	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	81915807	rs148335169	C	A	393.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr10	81917708	rs1079242	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr10	81918776	rs112550067	C	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	81921918	rs2245168	T	C	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:25,50:0.67:75
chr10	81923205	rs2236558	T	G	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=0.502;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:113,56:0.33:169
chr10	81923961	rs2236557	G	A	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,48:0.74:65
chr10	81925785	rs2573348	C	T	5004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.297;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=7.913;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=0.681;QD=29.61;ReadPosRankSum=0.681;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:49,120:0.71:169
chr10	81925792	.	ACG	A	267.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=184;set=Intersection	GT:AD:AF:DP	0/1:145,36:0.20:181
chr10	81925795	rs9421228	C	T	5391.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.712;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=6.060;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=1.164;QD=29.14;ReadPosRankSum=0.327;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:52,133:0.72:185
chr10	81925796	rs138741116	GCGCACACACACA	G	4727.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:58,128:0.69:186
chr10	81926702	rs1049550	G	A	2030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.442;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:65,93:0.59:158
chr10	81932790	rs2236556	T	C	160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.800;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.848;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr10	81994988	.	G	T	3102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DP=245;ExcessHet=3.0103;FS=6.634;MLEAC=1;MLEAF=0.500;MQ=51.41;MQRankSum=-9.903;QD=12.66;ReadPosRankSum=-2.902;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:161,84:0.34:245
chr10	81994993	.	G	A	3196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=3.626;MLEAC=1;MLEAF=0.500;MQ=51.11;MQRankSum=-9.324;QD=12.06;ReadPosRankSum=-2.866;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:171,94:0.35:265
chr10	81995058	rs2678622	G	A	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.00;MQRankSum=-2.372;QD=2.62;ReadPosRankSum=-0.780;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:363,101:0.22:464
chr10	81995240	rs61862376	G	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:73,43:0.37:116
chr10	82013134	rs1298908	C	T	8461.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:174,347:0.67:521
chr10	82013146	rs2573326	T	C	9482.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:195,397:0.67:592
chr10	82033594	rs2993763	G	A	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr10	82033683	rs4933327	G	A	1079.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.651;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:29,51:0.64:80
chr10	82034262	rs2994388	G	A	7666.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:179,347:0.66:526
chr10	82034842	rs10887711	A	G	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:26,63:0.71:89
chr10	82034854	rs10788546	T	C	1953.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:32,86:0.73:118
chr10	82040052	rs1143694	A	G	2384.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:74,109:0.60:183
chr10	82040346	rs2282367	A	G	7525.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:161,352:0.69:513
chr10	82049251	rs145126070	T	TTTCTTC	2060.73	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:30,55:0.65:85
chr10	82095968	rs1340383	T	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr10	82111460	rs11202652	T	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr10	82112488	rs1572819	A	G	658.90	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:3,24:0.89:27
chr10	82126808	rs1047952	C	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	82182296	rs1870142	G	A	2885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=-0.890;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:70,128:0.65:198
chr10	82182328	rs1870143	G	A	1940.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,90:0.60:150
chr10	82182405	rs5786455	C	CT	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.450;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=12.720;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=1.360;SOR=3.126;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr10	82182419	rs35293617	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.647;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr10	82191643	rs6585994	A	G	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:39,98:0.72:137
chr10	82249108	rs7902355	C	T	297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.663;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr10	82264423	rs2343550	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:85,30:0.26:115
chr10	82269238	rs10785897	C	T	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr10	82280387	rs72821613	G	A	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:308,135:0.30:443
chr10	82331292	rs72805712	G	A	586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.750;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:59,33:0.36:92
chr10	82331347	rs59617064	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr10	82369219	rs17107368	T	A	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:106,203:0.66:309
chr10	82394019	rs71310969	G	GT	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.671;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=0.975;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr10	84625107	rs478010	C	T	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr10	84711147	rs4933861	C	T	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.246;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=1.478;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:103,31:0.23:134
chr10	84745256	rs2295933	C	T	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:210,109:0.34:319
chr10	85902394	rs3816716	G	C	5576.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	85908688	rs7069909	G	A	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	85936160	rs4348833	T	C	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,50:0.35:142
chr10	85944313	rs12250279	A	T	2885.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=-0.689;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:3,127:0.98:130
chr10	85944313	.	ATTTTTTTTT	TTTTTTTTTA,TTTTTTTTTT	1477	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=9;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=19,80;NR=12,36;PP=435,1477;QD=15.7570282214;SC=TTGCTTTGAAATTTTTTTTTA;SbPval=0.29;Source=Platypus;TC=120;TCF=82;TCR=38;TR=31,116;WE=85944330;WS=85944300;set=Platypus	GT:AF:DP	0/1:0.26:120
chr10	85944322	rs35568118	T	A	725.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.073;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:107,49:0.31:156
chr10	85957681	rs11200915	A	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr10	85960274	rs11200920	A	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.376;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:188,33:0.15:221
chr10	85965819	rs10788335	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr10	85974236	rs3814213	T	C	3571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=1.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=1.172;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:486,220:0.31:706
chr10	85974381	rs3814212	A	G	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:223,96:0.30:319
chr10	85992478	rs3814210	T	C	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:246,118:0.32:364
chr10	85992511	rs3814209	T	C	1951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=-1.090;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:235,118:0.33:353
chr10	85993836	rs4933986	A	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	85993910	rs3814206	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:100,42:0.30:142
chr10	85994142	rs3829858	A	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:123,59:0.32:182
chr10	86001255	rs3841414	G	GGCCCAGCAA	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.004;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=2.825;QD=8.36;ReadPosRankSum=0.887;SOR=0.154;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr10	86004736	rs2279228	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	86004873	rs2279227	T	C	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	86010273	.	TACACACAC	T	1182	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=14;MMLQ=15;MQ=60.28;NF=0;NR=25;PP=1182;QD=47.4;SC=GACCATCTTATACACACACAC;SbPval=1.0;Source=Platypus;TC=45;TCF=1;TCR=44;TR=25;WE=86010290;WS=86010263;set=Platypus	GT:AD:AF:DP	0/1:20,25:0.56:45
chr10	86012713	rs1042454	C	T	2709.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:62,120:0.66:182
chr10	86018460	rs3526	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr10	86131671	rs150621117	A	G	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:261,128:0.33:389
chr10	86185654	rs1336202	T	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	87361961	rs1054979	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.859;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=18.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.21;ReadPosRankSum=-0.458;SOR=0.008;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr10	87966028	rs56757884	T	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:42,20:0.32:62
chr10	88024443	rs2607863	T	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	88024553	rs10887569	C	T	14529.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr10	88125921	rs10887587	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr10	88126056	rs11202000	T	G	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr10	88203068	rs7094132	T	C	5918.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr10	88203208	rs7094269	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	88213604	rs6586011	A	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	88220866	rs7922658	C	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	88230874	rs2288362	G	A	5410.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	88256943	rs4934215	C	T	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	88277457	rs10887621	C	T	11328.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr10	88281344	rs2289738	C	G	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	88281344	.	CCA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=52;NR=38;PP=2947;QD=20;SC=CCGGCCGGGCCCAGGCCTAGC;SbPval=0.49;Source=Platypus;TC=97;TCF=57;TCR=40;TR=90;WE=88281354;WS=88281334;set=Platypus	GT:AD:AF:DP	1/1:7,90:0.93:97
chr10	88281346	rs4934218	A	G	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	88414570	rs11202106	G	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:79,48:0.38:127
chr10	88422116	rs1079610	C	T	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:198,115:0.37:313
chr10	88422151	rs3740337	C	A	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:177,99:0.36:276
chr10	88426350	rs17425484	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:72,30:0.29:102
chr10	88428335	rs2803558	T	C	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:173,90:0.34:263
chr10	88439005	rs4468255	G	A	1330.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:135,69:0.34:204
chr10	88441223	rs35507268	G	A	4139.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:71,180:0.72:251
chr10	88445385	rs3740345	G	C	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr10	88458996	rs201580455	TTC	T	928.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr10	88466465	rs45459491	C	T	5292.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:102,239:0.70:341
chr10	88702350	rs4934281	G	C	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	88702390	rs10887673	G	A	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	88705306	rs3750822	T	G	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr10	88717140	rs4244973	T	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	88719569	rs760112	G	A	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	88719789	rs760113	C	G	8175.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	88722398	rs9864	A	T	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr10	88834244	.	C	CA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.85;ReadPosRankSum=0.457;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	88930249	rs11202365	A	T	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	88935590	rs11202370	C	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	88939962	rs7081609	T	C	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	88975783	rs28533204	C	T	2471.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:255,139:0.35:394
chr10	89264593	rs2233166	C	G	1694.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,70:0.71:99
chr10	89267957	rs3843597	C	T	855.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.26;ReadPosRankSum=-0.866;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:34,42:0.55:76
chr10	89269267	rs3843598	G	A	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr10	89463460	rs7923151	G	C	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:35,95:0.73:130
chr10	89463480	rs7923162	G	A	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:38,110:0.74:148
chr10	89469083	rs72025574	CATAT	C	778.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr10	89472721	rs148721342	CT	C	591.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.365;QD=9.39;ReadPosRankSum=0.180;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:19,44:0.70:63
chr10	89475617	rs2302405	G	A	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr10	89475640	rs3214322	GA	G	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-0.900;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr10	89475692	rs2302406	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	89475717	rs2302407	G	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr10	89720633	rs34003473	C	CT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-1.977;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:42,14:0.25:56
chr10	90568182	rs3899739	A	G	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:63,77:0.55:140
chr10	90574222	rs303524	C	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:30,41:0.58:71
chr10	90580144	rs10788615	C	T	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:67,96:0.59:163
chr10	90585819	rs7893917	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:60,84:0.58:144
chr10	90588154	rs1977537	A	G	1755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.019;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=6.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=1.258;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:23,43:0.65:66
chr10	90588161	rs1029025	C	T	1868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.59;ReadPosRankSum=-0.064;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:25,51:0.67:76
chr10	90673024	rs12254856	G	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:193,103:0.35:296
chr10	90676384	rs201798892	A	AT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.131;SOR=0.218;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr10	90680951	rs139970435	T	TA	78.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr10	90683124	rs1530281	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.278;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:12,5:0.29:17
chr10	90733148	rs111980233	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.785;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr10	90767395	rs2031611	G	C	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	90770439	rs2296600	C	G	8526.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	90771829	rs2234978	T	C	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	90773303	rs1571019	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	90966546	rs4078488	C	T	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:121,202:0.63:323
chr10	90966996	rs10887932	C	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:31,47:0.60:78
chr10	90982081	rs6586175	A	G	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	90983629	rs1556478	C	T	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	90984787	rs2297473	T	G	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	90984990	rs2297472	G	A	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	91007360	rs1051338	T	G	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr10	91007470	rs2250781	C	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	91066460	rs954439	T	A	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr10	91066769	rs1727	C	A	6990.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr10	91099943	rs10749607	C	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	91137826	rs304504	T	C	7119.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	91143529	rs304494	T	A	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr10	91152228	.	A	C	54	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=13;HapScore=2;MGOF=28;MMLQ=15;MQ=59.31;NF=1;NR=2;PP=54;QD=29.5904041824;SC=TTCATTCCCCACCCCCCCCCG;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=91152236;WS=91152221;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr10	91152321	rs74945792	C	CTTA	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	91152593	rs303218	G	A	295.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	91162497	rs303211	A	G	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr10	91162677	rs303210	C	T	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	91172556	rs79242890	AG	A	2070.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	91172663	rs304439	C	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	91174674	rs304434	C	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	91178000	rs304448	C	T	11756.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr10	91352966	rs2296616	G	A	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.238;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:56,110:0.66:166
chr10	91371445	rs7896079	C	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=1.061;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:71,19:0.21:90
chr10	91371844	rs3802655	C	T	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr10	91373511	rs7079690	T	C	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr10	91373624	rs7091626	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-0.522;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:62,41:0.40:103
chr10	91468925	rs1129777	C	G	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr10	91473975	rs11185854	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr10	91476465	rs3740035	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr10	91483908	rs7079174	G	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-1.329;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr10	91487649	rs12572012	A	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.647;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=0.586;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:54,32:0.37:86
chr10	91488979	rs3758388	A	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.678;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.201;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr10	91498127	rs1886996	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr10	91510982	rs1326201	T	C	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr10	91522605	rs3740038	G	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr10	91522689	rs17127001	G	A	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr10	92503476	rs55802807	C	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:73,31:0.30:104
chr10	92635211	rs149175620	T	TA	41.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	92638707	rs75192201	C	CAGT	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	92645687	rs4144422	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=1.431;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr10	92655338	rs59891149	A	AT	153.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr10	92655559	rs10881848	T	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.86;ReadPosRankSum=0.120;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr10	92655566	.	T	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;ClippingRankSum=-0.000;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.53;ReadPosRankSum=0.120;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr10	92655568	.	A	G	118.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.260;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.88;ReadPosRankSum=-0.405;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr10	92655569	rs150762208	T	TCA	109.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	92662860	rs4568910	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr10	92663108	rs7089472	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=2.055;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr10	92672564	rs3939	T	C	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:29,63:0.68:92
chr10	92675649	rs3839929	GA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.734;QD=3.64;ReadPosRankSum=-1.881;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr10	92676187	rs112074175	ATG	A	409.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr10	92678740	.	AATAAATAAATATATATATATATAT	A,AATATAT	8507.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=225;set=Intersection	GT:AF:DP	1/2:0.34,0.66:206
chr10	92678765	rs56177217	A	G	5191.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:71,141:0.67:212
chr10	92680929	rs10881855	A	G	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	93000211	rs10881907	G	A	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-1.912;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr10	93008177	rs12267225	G	A	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:36,13:0.27:49
chr10	93024316	rs11406829	T	TA	608.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,22:0.42:52
chr10	93031282	rs7912950	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=6.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=1.326;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr10	93031502	rs35609498	G	A	1257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.697;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:149,75:0.33:224
chr10	93170250	rs7081569	C	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	93170365	rs71025355	CG	C	1306.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	93572984	rs11186694	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,31:0.31:99
chr10	93577141	rs1539041	T	G	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr10	93579003	rs34501124	C	CT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.256;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:34,24:0.41:58
chr10	93579117	.	CT	C	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.336;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr10	93582248	rs61874701	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr10	93588201	rs1572933	G	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.328;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.319;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-0.624;SOR=1.116;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr10	93588208	rs1572934	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.515;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.420;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr10	93588247	rs3832677	AT	A	45.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,8:0.22:36
chr10	93593527	rs1770474	G	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr10	93600297	rs111962010	ATGTTG	A	1062.73	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr10	93605405	rs1770466	A	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr10	93608035	rs1538831	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.377;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr10	93611176	rs112177544	A	ATATG	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr10	93617306	rs1340420	A	G	1368.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:200,83:0.29:283
chr10	93668110	rs1107947	T	A	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-1.042;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr10	93695310	rs72823185	C	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr10	93716899	rs7894570	G	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	93717189	rs72823191	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:66,34:0.34:100
chr10	93719475	rs5786980	A	ATGTG	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.73;ReadPosRankSum=-0.065;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chr10	93719497	rs10581040	GTATATATA	G	247.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.171;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=2.120;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	93719499	rs28696856	A	G	303.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=-0.668;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	93719501	rs369413838	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=1.137;SOR=1.952;set=HC	GT:AD:AF:DP	0/1:15,5:0.25:20
chr10	93719507	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=2.278;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr10	93749380	rs41287646	T	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-0.013;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:43,27:0.39:70
chr10	93752074	rs112721454	GT	G	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=2.273;SOR=1.287;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr10	93754163	rs10882014	G	A	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr10	93756883	rs10591030	ACT	A	1230.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr10	93768096	rs11186794	G	C	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.472;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=0.433;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr10	93778520	rs140447601	CT	C	2128.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:69,125:0.64:194
chr10	93784488	rs141297800	A	AGTTTTTTT	50.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr10	93786557	rs61876492	A	C	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:53,95:0.64:148
chr10	93812334	rs1711841	G	A	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	93841227	rs2676811	A	G	4626.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	93851714	rs1229578	T	C	6017.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.419;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.87;ReadPosRankSum=-0.705;SOR=0.380;set=HC	GT:AD:AF:DP	1/1:1,241:1.00:242
chr10	93870699	rs1557178	C	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.675;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.46;ReadPosRankSum=-0.318;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:31,25:0.45:56
chr10	93999850	rs3824734	A	G	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr10	94238929	rs35864975	T	TA	738.06	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:8,41:0.84:49
chr10	94268316	.	G	GAA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=0.699;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	94294291	rs4646955	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr10	94353278	rs12256435	G	T	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.922;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr10	94366347	rs11393423	A	AT	322.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=0.541;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:41,28:0.41:69
chr10	94369023	.	CAGAGAG	CAG,C	209	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=28;MMLQ=17;MQ=59.08;NF=6,6;NR=9,9;PP=147,209;QD=10.0;SC=TTTGAGAAGTCAGAGAGAGAG;SbPval=0.48;Source=Platypus;TC=22;TCF=8;TCR=14;TR=15,15;WE=94369040;WS=94369013;set=Platypus	GT:AF:DP	0/1:0.68:22
chr10	94369060	.	AGTGTGTGT	TGTGTGTGT	255	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.4938,0.5062,0.9965;HP=2;HapScore=4;MGOF=34;MMLQ=9;MQ=58.41;NF=6,6,2;NR=10,10,1;PP=14,227,255;QD=1.0625;SC=AGAGAGAGAGAGTGTGTGTGT;SbPval=0.52;Source=Platypus;TC=17;TCF=6;TCR=11;TR=16,16,3;WE=94369075;WS=94369058;set=Platypus	GT:AD:AF:DP	0/1:29,3:0.09:32
chr10	94369060	.	AGTGTGTGT	AGT,A	255	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.4938,0.5062,0.9965;HP=2;HapScore=4;MGOF=34;MMLQ=9;MQ=58.41;NF=6,6,2;NR=10,10,1;PP=14,227,255;QD=1.0625;SC=AGAGAGAGAGAGTGTGTGTGT;SbPval=0.52;Source=Platypus;TC=17;TCF=6;TCR=11;TR=16,16,3;WE=94369075;WS=94369058;set=Platypus	GT:AF:DP	0/1:0.94:17
chr10	94392513	rs113828479	A	ATAATT	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	94407857	rs143177285	C	T	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.101;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.69;ReadPosRankSum=0.013;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:18,28:0.61:46
chr10	94407865	rs34357393	CA	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.287;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.026;QD=3.72;ReadPosRankSum=1.719;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr10	94409800	rs6583833	C	T	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	94452430	rs2275729	T	G	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr10	94507612	rs2488066	A	G	11714.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:2,464:1.00:466
chr10	94511683	rs2096177	G	T	13422.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr10	94594416	rs11408607	A	AT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.734;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=0.409;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:104,21:0.17:125
chr10	94594565	rs2490741	G	A	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	94816807	rs60582805	G	GA	2506.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:2,99:0.98:101
chr10	94820860	rs1538648	A	G	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr10	94822686	rs55843714	C	T	9609.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr10	94822895	rs12263200	G	T	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr10	94826081	.	TCCTGCCG	T	3351.73	.	AC=2;AF=1.00;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	95070037	rs2761286	A	G	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	95070080	rs2797581	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	95070526	rs787661	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	95072906	rs787666	T	C	6833.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr10	95073046	rs787667	A	G	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr10	95083204	rs148815470	ATTTC	A	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	95089762	rs17477816	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr10	95093619	rs61861290	G	A	2274.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:55,100:0.65:155
chr10	95095600	rs787689	G	C	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.015;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:205,87:0.30:292
chr10	95095667	rs7097740	A	G	3233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.919;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.026;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:465,207:0.31:672
chr10	95097537	rs1614065	T	C	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.175;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:136,77:0.36:213
chr10	95098144	rs10786089	T	C	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:91,40:0.31:131
chr10	95099849	rs2761329	G	A	415.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr10	95101480	rs1408031	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:9,4:0.31:13
chr10	95107324	rs7092152	A	T	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.36;MQRankSum=3.588;QD=6.91;ReadPosRankSum=-3.087;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr10	95107428	rs11187393	G	A	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr10	95109737	rs2298158	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:77,27:0.26:104
chr10	95123618	rs10882221	G	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr10	95132905	rs787647	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	95134461	rs1886076	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr10	95139526	rs10882229	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	95148835	rs17108594	T	C	4322.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:82,195:0.70:277
chr10	95159025	rs701862	T	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr10	95159115	rs78464761	A	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:40,55:0.58:95
chr10	95159335	rs77041759	A	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr10	95161268	rs41290202	C	T	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.634;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:179,68:0.28:247
chr10	95162113	rs2272177	G	C	511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=11.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.126;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:47,29:0.38:76
chr10	95162147	rs41290204	G	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr10	95162525	rs3841653	TC	T	611.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr10	95162660	rs41290206	T	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr10	95163883	rs56041929	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:107,39:0.27:146
chr10	95164040	rs788088	A	G	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	95216430	rs17481931	C	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	95216623	rs701882	A	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=1.165;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr10	95237861	rs2096181	C	T	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	95237899	rs58873758	ATAT	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	95237963	rs3938769	A	G	1291.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	95238050	rs6583893	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	95241721	rs75929587	C	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-0.219;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:23,36:0.61:59
chr10	95241754	rs79268758	G	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,51:0.63:81
chr10	95241999	rs947597	A	C	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	95262981	rs7080916	A	G	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:2,192:0.99:194
chr10	95266683	rs947599	A	G	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	95276673	rs4919224	G	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	95278829	rs2280605	A	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	95278841	rs2280606	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	95279506	rs2293277	A	T	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	95279653	rs7068719	A	G	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	95287643	rs34668129	G	GA	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:12,51:0.81:63
chr10	95359968	rs10882282	G	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr10	95380790	rs1223306	G	A	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	95386556	.	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=3.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.118;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:198,72:0.27:270
chr10	95394455	rs1856563	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	95395247	rs616522	A	G	2644.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	95399642	rs17485621	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr10	95400510	rs12780304	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	95405665	rs3831275	CTA	C	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr10	95405814	rs1409332	C	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:201,107:0.35:308
chr10	95419032	rs720298	C	A	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	95421683	rs2422324	G	C	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr10	95422245	rs10882298	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.671;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	95429671	rs200909144	TTAC	T	121.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	95432968	rs1572773	T	C	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr10	95433124	rs1326214	A	G	11727.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	95433538	rs78166234	T	C	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:34,52:0.60:86
chr10	95443688	rs8181435	C	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-2.421;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr10	95444931	rs767701	T	G	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr10	95454449	rs11187593	C	T	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.756;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:8,10:0.56:18
chr10	95454470	.	TAAAAAAAAAAA	T	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.576;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=1.048;SOR=1.239;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr10	95454681	rs2275438	G	C	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:72,27:0.27:99
chr10	95458141	rs11187597	A	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:159,80:0.33:239
chr10	95459698	rs2275441	G	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr10	95459817	rs726817	C	T	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr10	95549836	rs368174638	C	CTT	912.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.26;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,39:0.95:41
chr10	95552653	rs1111820	T	C	8021.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr10	95658258	rs11187724	C	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,69:0.54:128
chr10	95718474	rs829225	A	G	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	95718600	rs11815169	T	C	4365.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:93,195:0.68:288
chr10	95720490	rs12570608	C	T	5013.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:142,209:0.60:351
chr10	95720501	rs12571819	T	C	4718.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:154,216:0.58:370
chr10	95931087	rs17417407	G	T	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:169,92:0.35:261
chr10	95931343	rs72814608	A	C	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:32,55:0.63:87
chr10	95987313	rs11187825	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	96013824	rs1408820	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	96014622	rs10786156	C	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr10	96018510	rs4918182	A	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	96022618	rs11307441	GT	G	646.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr10	96030458	rs1969867	G	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr10	96039597	rs2274224	G	C	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	96039708	rs2274225	C	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	96043732	rs7084339	A	G	595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.180;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=1.928;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:142,44:0.24:186
chr10	96058298	rs3765524	C	T	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:283,151:0.35:434
chr10	96058433	rs17516758	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:95,46:0.33:141
chr10	96064168	rs3818432	C	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr10	96066341	rs2274223	A	G	1379.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:174,83:0.32:257
chr10	96068480	rs11187850	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,57:0.49:116
chr10	96084372	rs3831084	A	AT	326.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr10	96087728	rs3203713	A	G	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr10	96098373	rs17517578	C	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:183,95:0.34:278
chr10	96109325	rs7085378	C	A	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	96112233	rs7092226	T	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.196;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=4.612;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=1.491;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	96114640	rs71482303	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.681;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.296;SOR=1.552;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr10	96116419	rs12771562	GA	AG	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.317;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-2.359;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:22,15:0.41:37
chr10	96122543	rs7100430	A	G	1095.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.870;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:113,61:0.35:174
chr10	96163039	rs2477534	C	G	669.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr10	96201820	rs12246393	C	T	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.372;QD=6.31;ReadPosRankSum=0.064;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:77,42:0.35:119
chr10	96201839	rs137964875	CTTT	C,CT	1225.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;QD=24.51;SOR=1.880;set=HC	GT:AD:AF:DP	1/2:5,21,24:0.42,0.48:50
chr10	96257048	rs11187985	A	C	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr10	96271298	rs2860761	A	C	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	96282390	rs10882469	G	A	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr10	96292988	rs12260063	T	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=2.307;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-1.417;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr10	96305504	rs2274096	T	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.547;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=0.637;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:14,20:0.59:34
chr10	96305729	rs10882474	T	C	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr10	96313960	rs11188019	A	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr10	96322404	rs10882477	G	A	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.83;ReadPosRankSum=2.308;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr10	96334578	rs7079934	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr10	96341336	rs12220588	A	C	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr10	96343623	rs962234	T	C	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	96353201	rs3781262	G	A	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr10	96353422	rs11346357	AT	A	438.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr10	96356571	rs7906968	A	T	307.56	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr10	96357022	rs2274417	A	G	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr10	96448129	rs1926706	A	G	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr10	96466824	rs7904929	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	96796861	rs1058932	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr10	96802598	rs2275620	A	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	96818362	rs11572101	A	G	57.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr10	96827119	rs11572078	T	TA	1556.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr10	96827178	rs2275622	T	C	4914.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	96828323	rs2071426	T	C	785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.44;ReadPosRankSum=0.413;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:76,46:0.38:122
chr10	96954298	rs591157	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:136,57:0.30:193
chr10	96954360	rs11188225	T	A	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:210,87:0.29:297
chr10	96954473	rs592041	A	T	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.549;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=2.813;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:76,37:0.33:113
chr10	96954479	rs592055	G	A	1169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.188;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=2.351;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:63,34:0.35:97
chr10	96954511	rs681838	T	A	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	96961184	rs602941	G	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=-0.345;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr10	96966954	rs58102963	GT	G	943.73	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:119,65:0.35:184
chr10	96970361	rs16872	A	C	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.136;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:215,107:0.33:322
chr10	96972889	rs17524438	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr10	96974518	rs595478	A	T	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr10	96974552	rs595420	C	T	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr10	96974803	rs594448	A	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:109,60:0.36:169
chr10	96979504	rs11188228	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr10	96979775	rs11188229	C	G	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr10	96985198	rs489807	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr10	97023541	rs4918908	C	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr10	97023552	rs4917682	G	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.09;ReadPosRankSum=-0.600;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr10	97023630	rs2296961	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:78,46:0.37:124
chr10	97023895	rs2296962	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.941;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr10	97050555	rs45546031	C	T	2098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=1.984;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:211,121:0.36:332
chr10	97082707	rs191494525	C	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:113,53:0.32:166
chr10	97174269	rs11188316	C	T	3885.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:84,176:0.68:260
chr10	97181855	rs17849163	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr10	97192324	rs943542	A	G	4890.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr10	97366746	rs7099284	C	T	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr10	97369939	rs10882640	C	T	2700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.859;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-0.294;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:73,122:0.63:195
chr10	97371146	rs1804934	G	A	400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=0.212;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:119,33:0.22:152
chr10	97371317	rs11188399	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	97373966	rs2296692	A	C	1113.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chr10	97385014	rs57670810	T	C	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:44,86:0.66:130
chr10	97388162	rs2275272	G	A	4593.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:118,210:0.64:328
chr10	97412921	rs9787589	T	G	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr10	97440159	rs11595248	G	A	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:9,41:0.82:50
chr10	97440394	rs12784530	T	C	847.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr10	97602091	rs3181131	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr10	97604406	rs3176886	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:20,42:0.68:62
chr10	97605057	rs7074403	C	G	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:40,15:0.27:55
chr10	97681697	.	TATA	T	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.68;ReadPosRankSum=0.072;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:50,10:0.17:60
chr10	97681714	rs11594853	T	C	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.08;ReadPosRankSum=2.295;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:17,58:0.77:75
chr10	97684234	rs34963139	G	A	88.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	97698338	rs35298116	G	A	951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-0.436;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:32,47:0.59:79
chr10	97698370	rs4918979	C	T	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr10	97748040	rs7900838	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	97769856	rs4145209	G	C	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	97772253	rs3748224	C	T	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	97772358	rs17383738	A	G	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:37,80:0.68:117
chr10	97772496	rs10748652	T	A	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	97778853	rs1414922	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	97779219	rs1414921	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	97816420	rs7099399	G	A	3249.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:359,186:0.34:545
chr10	97920099	rs67530050	T	TC	11879.73	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr10	97920278	rs41291608	T	C	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:39,60:0.61:99
chr10	97964154	rs10748665	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.42;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	97964154	.	CGTA	TGTA,TGTG	441	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.11;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=28,10;NR=11,3;PP=441,216;QD=12.1992618602;SC=CCTTTTAACACGTAACTGCAA;SbPval=0.56;Source=Platypus;TC=39;TCF=28;TCR=11;TR=39,13;WE=97964165;WS=97964144;set=Platypus	GT:AF:DP	0/1:1.00:39
chr10	97964157	rs2242137	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.405;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.83;ReadPosRankSum=0.179;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr10	97975167	rs3835127	GTATA	GTA,G	229.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=33;set=Intersection	GT:AF:DP	0/1:0.62:21
chr10	97987378	rs34233512	G	A	2687.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:55,119:0.68:174
chr10	97990583	rs727852	A	G	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	98006857	rs2168732	A	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	98007247	rs117567726	A	G	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr10	98007727	rs10882762	A	G	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr10	98007933	rs9663433	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.047;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=4.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-1.236;SOR=1.450;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr10	98007943	rs9664029	T	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.284;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.912;SOR=1.744;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr10	98078127	rs7081385	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	98078239	rs6584066	A	G	7575.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	98082517	rs7097016	T	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	98084231	rs2181320	A	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	98088387	rs10882773	A	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	98095794	rs10736102	T	C	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr10	98105618	rs56148171	A	C	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,30:0.67:45
chr10	98111279	rs2146392	C	T	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-0.000;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	98116076	rs2861575	C	T	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr10	98127809	rs41291624	A	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr10	98144312	rs7085022	G	A	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	98180613	rs3789951	A	G	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr10	98180644	rs3789952	C	T	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:11,32:0.74:43
chr10	98180958	rs3789954	T	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr10	98240035	rs2281801	A	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	98240045	rs2281800	C	T	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.35;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	98287094	rs10786298	T	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	98287261	rs3789957	G	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	98312891	rs10736113	C	T	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	98319236	rs10128106	G	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	98319367	rs3818389	A	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	98319503	rs3818390	A	T	485.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	98321928	rs7094142	A	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	98346411	rs11188836	A	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	98369536	rs3748236	A	G	2435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=2.302;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:78,119:0.60:197
chr10	98369755	rs41317270	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	98380137	rs12784975	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr10	98380363	rs7910630	A	G	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	98383329	rs4917745	G	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	98386433	rs1469847	C	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	98386558	rs4344416	G	A	7526.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr10	98392872	rs6584092	A	C	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	98408714	rs912483	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	98412329	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=4.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=-1.670;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:55,13:0.19:68
chr10	98469693	rs17112076	C	T	1965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=-2.424;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:65,94:0.59:159
chr10	98761222	rs2002616	T	A	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr10	98797351	rs2805586	A	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.34;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	98797351	.	AGGATCTGCC	GGGATCTGCC,GGGATCTGCT	869	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=22;MQ=60.0;NF=46,35;NR=26,18;PP=193,869;QD=3.16348906316;SC=GAAAAGAAGCAGGATCTGCCC;SbPval=0.53;Source=Platypus;TC=72;TCF=46;TCR=26;TR=72,53;WE=98797368;WS=98797341;set=Platypus	GT:AF:DP	0/1:1.00:72
chr10	98797360	rs75066754	C	T	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=1.920;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:29,63:0.68:92
chr10	98803252	rs35388136	G	A	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.048;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr10	98808866	rs2805588	C	G	7181.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr10	98816786	rs2817675	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr10	98817687	rs7914872	A	G	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:84,157:0.65:241
chr10	98819317	rs2817676	A	G	1554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-1.355;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:182,94:0.34:276
chr10	98825940	rs1106375	G	A	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	98923361	rs2636772	T	C	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr10	98979111	rs10714841	AT	A	282.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	98988759	rs1468069	A	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	98989454	rs2297987	A	G	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	99003613	rs793528	A	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	99019144	rs3740522	C	T	6947.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr10	99019177	rs2253301	A	G	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	99025611	rs10882884	T	A	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	99079023	rs11189127	G	A	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	99117120	rs10882905	G	A	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr10	99125949	rs2275580	C	T	9953.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr10	99130097	.	A	G	911.77	.	AC=1;AF=0.500;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	0/1:99,45:0.31:144
chr10	99130161	rs149757559	CCCCA	C	15488.73	.	AC=2;AF=1.00;AN=2;DB;DP=360;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr10	99153347	rs191393792	T	A	749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.295;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:85,46:0.35:131
chr10	99160965	rs2275091	A	G	12692.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr10	99185690	rs7093752	T	G	197.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.76;MQRankSum=2.131;QD=8.59;ReadPosRankSum=-1.462;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:3,20:0.87:23
chr10	99185690	.	TCCGCCCT	GCCGCCCG,GCCGCCCT	413	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.52;FR=0.5000,0.5000;HP=5;HapScore=2;MGOF=66;MMLQ=23;MQ=61.97;NF=0,1;NR=4,16;PP=413,52;QD=116.616968716;SC=CCCGCCGCCCTCCGCCCTCCG;SbPval=1.0;Source=Platypus;TC=20;TCF=1;TCR=19;TR=4,17;WE=99185705;WS=99185680;set=Platypus	GT:AF:DP	0/1:0.20:20
chr10	99205686	rs2297666	A	G	7560.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr10	99220707	rs3740526	C	T	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	99225738	rs2236575	T	A	8414.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:2,320:0.99:322
chr10	99240758	rs2275586	G	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99337473	rs10786357	T	C	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99337572	rs7094973	G	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr10	99350017	rs7093840	G	C	5170.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:125,237:0.65:362
chr10	99350128	rs7093643	A	G	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:77,146:0.65:223
chr10	99359406	rs75929214	C	T	1385.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr10	99376843	rs4919121	A	C	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,79:0.99:80
chr10	99498234	rs3818876	G	A	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	99504630	rs10882993	G	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	99504725	rs10882994	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	99507869	rs11189352	T	C	5868.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr10	99509457	rs946778	T	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	99509969	rs3750615	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	99510068	rs3750614	G	T	6270.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.59;ReadPosRankSum=2.303;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:2,253:0.99:255
chr10	99510284	rs3829137	T	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	99512472	rs1538723	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99514645	rs7922907	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	99516955	rs10882995	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	99517355	rs3750612	A	G	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	99518810	rs1981238	C	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	99518874	rs10882996	G	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	99518901	rs12412543	G	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:1,177:0.99:178
chr10	99519097	rs1981237	A	G	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	99527407	rs150285284	T	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:113,53:0.32:166
chr10	99531571	rs11815012	C	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	99638216	rs3793697	T	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	99639573	rs2297934	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr10	99640255	rs10883009	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:100,43:0.30:143
chr10	99664456	rs7068503	T	C	5844.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:118,264:0.69:382
chr10	99682981	rs894375	T	C	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	99683270	rs2289554	G	A	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,61:0.73:83
chr10	99696003	rs35027739	G	A	2486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=1.136;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:64,116:0.64:180
chr10	99790068	rs138886660	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr10	99969475	rs34494334	A	C	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:79,164:0.67:243
chr10	99991408	rs1952061	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	99995773	rs61875307	C	T	1461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.176;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:25,68:0.73:93
chr10	100003785	rs1359508	T	C	585.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:24,28:0.54:52
chr10	100011114	rs7082202	T	A	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr10	100011970	rs3750598	G	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=0.235;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr10	100012011	rs10748722	C	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	100013244	rs3750599	A	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr10	100013438	rs17524355	C	T	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:77,161:0.68:238
chr10	100013563	rs7086391	C	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:41,87:0.68:128
chr10	100015603	rs3763689	G	T	2794.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:46,114:0.71:160
chr10	100022446	rs10736125	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	100022917	rs112780536	A	ATG	1234.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.66;ReadPosRankSum=0.673;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr10	100146895	rs2296438	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr10	100147060	rs4345897	A	G	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,104:0.66:157
chr10	100148004	rs2182169	T	C	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr10	100148058	rs4539242	T	C	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:34,89:0.72:123
chr10	100148176	rs2147896	A	G	4988.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:154,239:0.61:393
chr10	100148308	rs2147895	T	G	1574.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:25,68:0.73:93
chr10	100148353	rs2182168	C	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,35:0.80:44
chr10	100150938	rs17109620	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.58;ReadPosRankSum=0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr10	100152177	rs41290480	C	T	2046.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:42,83:0.66:125
chr10	100152373	rs6584192	T	G	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:79,142:0.64:221
chr10	100152560	rs60153449	C	A	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr10	100155296	rs11189591	T	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr10	100157329	rs61159293	AC	A	2684.73	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:49,105:0.68:154
chr10	100157368	rs10786418	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:28,74:0.73:102
chr10	100167860	rs942810	G	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,97:0.65:149
chr10	100167951	rs17109675	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr10	100170507	rs7896828	A	T	1919.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:48,83:0.63:131
chr10	100179851	rs2296436	T	C	6784.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:144,313:0.68:457
chr10	100183570	rs2296434	G	C	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:74,99:0.57:173
chr10	100183774	rs10883093	A	G	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	100185250	rs41317034	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr10	100189138	rs1061135	A	G	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr10	100189242	rs34533614	G	A	4256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.64;ReadPosRankSum=0.159;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:59,107:0.64:166
chr10	100189252	rs1061134	G	A	4363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-1.312;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:56,114:0.67:170
chr10	100190264	rs2296431	T	C	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:254,112:0.31:366
chr10	100193557	rs11593787	T	C	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:80,38:0.32:118
chr10	100193679	rs1886728	G	C	3801.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:445,220:0.33:665
chr10	100194909	rs11594443	T	C	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr10	100195130	rs11539873	G	A	4747.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:100,218:0.69:318
chr10	100195583	rs2296430	T	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.943;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.688;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr10	100219314	rs10883099	G	A	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr10	100219374	rs10883100	T	A	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	100219519	rs11189618	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	100250019	rs59184373	GACACACACACAC	GAC,G	1434.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/1:1.00:36
chr10	100401745	rs693656	T	C	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	100481305	rs11189772	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	100481683	rs11352482	GA	G	340.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.04;ReadPosRankSum=-0.174;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr10	100991971	.	TACAC	T	2202.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.64;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	100991976	.	A	G	985.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=8.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.33;ReadPosRankSum=1.191;SOR=2.143;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr10	100991979	.	C	T	985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=8.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.33;ReadPosRankSum=1.329;SOR=2.143;set=HC	GT:AD:AF:DP	0/1:11,40:0.78:51
chr10	101090428	rs2862600	T	G	2883.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:61,116:0.66:177
chr10	101120787	rs3763792	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr10	101150256	rs3793931	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr10	101166544	rs2234971	C	T	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:194,109:0.36:303
chr10	101372411	rs880568	T	C	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	101420283	rs71933840	GCACACACA	G,GCA	1377.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=44.44;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:0,21,10:0.68,0.32:31
chr10	101420291	rs200367050	A	G	110.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.327;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr10	101420316	rs7093631	C	G	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.606;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.46;ReadPosRankSum=0.432;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr10	101420318	rs28529459	C	G	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	101420324	rs11190227	T	G	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=-1.288;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:21,19:0.47:40
chr10	101439252	rs3740079	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr10	101445591	rs3740078	A	C	761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.273;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:124,51:0.29:175
chr10	101451259	rs11190245	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:38,11:0.22:49
chr10	101462193	rs10748790	C	T	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	101473218	rs2231687	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	101474499	rs11190255	T	C	90.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr10	101480549	rs56288771	T	TG	55.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,3:0.23:13
chr10	101480550	rs3740077	T	G	64.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:11,3:0.21:14
chr10	101480604	rs3832650	C	CAG	1547.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	101489216	rs145861614	CAAA	C	1042.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.915;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.44;ReadPosRankSum=-0.174;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr10	101514219	rs17112219	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr10	101515316	rs3184991	T	C	36.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,3:0.30:10
chr10	101544447	rs927344	A	T	7398.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:0,284:1.00:284
chr10	101551902	rs2756108	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	101571528	rs3740074	C	T	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	101576960	rs3740073	T	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	101591944	rs4148396	T	C	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	101602004	rs3758395	T	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr10	101639796	rs2255901	G	A	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:95,155:0.62:250
chr10	101639877	rs11190305	A	C	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:90,133:0.60:223
chr10	101645498	rs2490763	T	C	508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=2.479;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=10.60;ReadPosRankSum=-0.434;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:22,26:0.54:48
chr10	101654696	rs3758394	T	C	1108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=1.829;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:117,64:0.35:181
chr10	101841153	rs10883439	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	101912064	rs2862954	T	C	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.134;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:136,49:0.26:185
chr10	101980459	rs986266	A	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	102035124	rs140852755	G	A	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr10	102055791	.	C	CA	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.964;QD=1.21;ReadPosRankSum=-0.471;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr10	102056970	rs2278841	A	G	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr10	102056970	.	AGG	GGT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=5;HapScore=1;MGOF=10;MMLQ=26;MQ=60.0;NF=44;NR=54;PP=2947;QD=20;SC=ACCAGCCTATAGGGGGAGGGG;SbPval=0.59;Source=Platypus;TC=108;TCF=50;TCR=58;TR=98;WE=102056980;WS=102056960;set=Platypus	GT:AD:AF:DP	1/1:10,98:0.91:108
chr10	102056972	rs2278840	G	T	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	102057005	rs2278839	G	A	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	102088906	rs3829159	C	T	5679.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.974;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr10	102104600	.	A	AT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.057;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.587;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr10	102107251	rs1054411	C	G	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:61,122:0.67:183
chr10	102116208	rs111712956	ATCCCC	A	5206.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:68,133:0.66:201
chr10	102116311	rs2234970	A	C	4445.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:98,203:0.67:301
chr10	102222825	rs3793772	T	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr10	102222957	rs3793771	G	C	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	102238953	rs11190578	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	102239829	rs2295770	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	102241998	rs17113137	G	C	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr10	102247408	rs2298075	C	A	4494.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	102247526	rs2298074	G	C	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr10	102248884	rs3750720	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	102248950	rs3750719	C	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	102258439	rs9420792	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	102258991	rs41290542	C	T	1673.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:191,97:0.34:288
chr10	102265056	rs140191147	AAC	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.429;QD=0.82;ReadPosRankSum=0.194;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:62,10:0.14:72
chr10	102265183	rs2295772	G	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr10	102265815	rs2295773	A	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	102265847	rs2295774	A	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,108:0.99:109
chr10	102266316	rs3750626	C	T	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	102269085	rs3793706	C	A	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	102269206	rs3763695	A	G	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	102275780	rs3750630	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	102289078	rs1800662	C	A	10246.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr10	102289743	rs10883506	C	G	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	102295629	rs2295776	G	T	5873.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,228:1.00:228
chr10	102295658	.	T	TTG	970	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=12;HapScore=1;MGOF=18;MMLQ=23;MQ=59.78;NF=10,10;NR=31,31;PP=88,970;QD=2.26829268293;SC=TTTTTTTTTTTGGGGTCCGGA;SbPval=0.67;Source=Platypus;TC=144;TCF=39;TCR=105;TR=41,41;WE=102295666;WS=102295635;set=Platypus	GT:AD:AF:DP	0/1:102,41:0.29:143
chr10	102295658	rs11190600	T	G,TG	6082.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=242;set=Intersection	GT:AF:DP	1/2:0.77,0.22:222
chr10	102296061	rs2295779	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	102296461	rs10883509	C	T	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	102307671	rs7073586	A	G	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	102506070	rs4472867	G	C	2554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.784;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-0.092;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:337,158:0.32:495
chr10	102506103	rs4405241	C	A	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:225,104:0.32:329
chr10	102566371	rs79552202	G	A	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr10	102673063	rs3802725	G	T	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:32,90:0.74:122
chr10	102684380	rs10883563	C	A	8490.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr10	102689217	rs2273654	T	C	3250.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:61,136:0.69:197
chr10	102689504	rs10786614	G	A	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	102707526	rs12780429	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr10	102739841	rs34389611	G	A	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:195,127:0.39:322
chr10	102744331	rs11591349	A	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:56,123:0.69:179
chr10	102744376	rs11190780	T	C	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.898;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=4.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.273;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:156,72:0.32:228
chr10	102746231	rs7184	C	T	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr10	102746829	rs181211282	G	A	8296.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:172,363:0.68:535
chr10	102762256	rs752974	C	T	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr10	102770082	rs807023	T	G	9697.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr10	102770293	rs200896335	T	TGCTGCG	2077.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:6,79:0.93:85
chr10	102770327	rs807022	A	G	2571.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr10	102775221	.	ATG	A	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=8.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.450;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr10	102775349	rs34125357	CT	C	3887.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	102777461	rs10786615	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	102777768	rs11190793	C	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	102780265	rs7075659	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	102780312	rs7075685	G	T	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	102780354	rs77484072	TG	T	6362.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr10	102783633	rs376572985	GA	G	2703.73	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:169,87:0.34:256
chr10	102783678	rs6584410	T	C	9416.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	102792295	rs807014	G	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	102798346	rs807049	T	C	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	102824349	rs807037	G	C	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	102988345	rs941909	G	A	5817.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:125,250:0.67:375
chr10	102997581	rs678741	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.334;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr10	103221870	rs5787432	CAGG	C	1849.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr10	103281308	rs9419923	A	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:73,29:0.28:102
chr10	103281722	rs9420854	C	G	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=0.091;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr10	103291249	rs9420859	T	C	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr10	103371075	.	G	A	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.641;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:67,49:0.42:116
chr10	103531201	rs3218234	C	T	3007.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:86,139:0.62:225
chr10	103542959	rs935445	CC	GG	21370.77	.	AC=1;AF=0.500;AN=2;DB;DP=914;JOINED;set=Intersection	GT:AD:AF:DP	0/1:377,535:0.59:912
chr10	103550604	rs1124714	T	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.278;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-0.148;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:46,23:0.33:69
chr10	103560186	rs2305194	A	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr10	103567665	rs372242564	GA	G	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=6.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.901;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:101,48:0.32:149
chr10	103573222	rs11191118	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chr10	103587552	rs2305189	G	A	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:182,86:0.32:268
chr10	103588734	rs1562364	A	G	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:173,84:0.33:257
chr10	103599325	rs874885	A	T	450.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr10	103609704	rs7918620	G	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr10	103717493	rs376923161	T	TA	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=7.43;ReadPosRankSum=-2.126;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:17,31:0.65:48
chr10	103766490	.	A	AT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.250;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=1.28;ReadPosRankSum=-0.167;SOR=0.271;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr10	103799758	rs11191190	C	T	1176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.299;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=1.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.043;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:188,72:0.28:260
chr10	103869633	rs78325172	C	T	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr10	103904763	rs11357964	TC	T	2466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.119;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:54,104:0.66:158
chr10	103908080	rs3740405	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr10	104110843	.	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.926;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=2.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.55;ReadPosRankSum=-0.312;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr10	104111540	rs144741702	T	TACC	2141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=0.179;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:112,58:0.34:170
chr10	104120731	.	C	CA	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.700;QD=4.06;ReadPosRankSum=-1.906;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:68,51:0.43:119
chr10	104121812	.	T	C	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.04;ReadPosRankSum=2.237;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr10	104122842	rs1890060	A	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:7,16:0.70:23
chr10	104126341	.	CT	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=-0.000;DP=22;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=-1.207;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr10	104128954	rs7902882	T	A	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	104136469	rs2180707	T	C	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr10	104156390	rs138364110	G	GT	5135.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	104157727	rs4919632	C	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	104158933	rs3740418	C	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	104158972	rs60282371	C	CA	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=1.814;QD=2.67;ReadPosRankSum=0.329;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr10	104159196	rs4919633	A	G	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	104160434	rs4919634	A	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	104163489	rs7068416	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	104163569	rs11191283	G	A	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	104164778	.	G	A	5659.77	.	AC=1;AF=0.500;AN=2;DP=410;set=Intersection	GT:AD:AF:DP	0/1:153,256:0.63:409
chr10	104168611	rs148440547	G	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:80,45:0.36:125
chr10	104179219	rs56384670	C	A	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	104184081	rs1044476	G	A	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:282,156:0.36:438
chr10	104184213	rs41287462	G	A	6156.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:167,286:0.63:453
chr10	104184953	rs11597439	C	G	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr10	104184981	rs11593146	A	G	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	104196465	rs2224374	T	C	108.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	104214080	rs148334455	CT	C	2212.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.079;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.762;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.374;QD=17.99;ReadPosRankSum=-0.612;SOR=0.237;set=HC	GT:AD:AF:DP	1/1:7,116:0.94:123
chr10	104215075	rs151146512	CTCTT	C	2298.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:128,69:0.35:197
chr10	104229057	rs35597970	C	CA	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr10	104229785	rs41306870	C	T	2153.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:256,125:0.33:381
chr10	104230930	rs68007409	TTCGGTGCTGGG	T	916.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr10	104231054	rs11191295	A	G	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:65,33:0.34:98
chr10	104231234	rs913028	T	C	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	104231651	rs7081110	A	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chr10	104231662	rs7081467	G	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr10	104232716	rs3740415	G	A	3508.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:317,186:0.37:503
chr10	104232809	rs3740414	T	G	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:72,45:0.38:117
chr10	104235807	.	TGGTTTTTTTTTTAAGGATTTCATAG	T	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=9.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.35;ReadPosRankSum=-2.766;SOR=1.691;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr10	104240498	rs12162	A	G	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	104240974	rs2296578	C	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr10	104241983	rs12763720	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.963;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:64,21:0.25:85
chr10	104242886	rs2296581	G	A	3376.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:82,155:0.65:237
chr10	104243883	rs7079810	C	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:49,95:0.66:144
chr10	104244139	rs2296582	G	T	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:121,143:0.54:264
chr10	104245549	rs2296585	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr10	104245575	rs2296586	G	A	421.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr10	104245588	rs2296587	G	A	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,15:0.83:18
chr10	104248087	rs2296588	T	C	2399.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:69,108:0.61:177
chr10	104248106	rs2296589	T	A	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:51,81:0.61:132
chr10	104250209	rs111446950	CT	C	1570.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:25,54:0.68:79
chr10	104250278	rs17709610	A	G	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr10	104264107	rs2274351	C	T	3379.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:265,185:0.41:450
chr10	104268877	rs2281879	G	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:5,26:0.84:31
chr10	104269217	rs2281880	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	104356822	rs10786690	A	G	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	104375258	rs2001389	G	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr10	104378688	.	CGT	C	221.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	104378750	rs10786698	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr10	104389932	rs4917980	T	G	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr10	104404335	rs4146426	A	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:79,43:0.35:122
chr10	104404338	.	C	T	1772.77	.	AC=1;AF=0.500;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	0/1:46,80:0.63:126
chr10	104414709	rs2286748	C	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr10	104415720	rs4274160	T	C	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	104415777	rs78418271	G	C	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:76,161:0.68:237
chr10	104445545	rs3832710	AG	A	375.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr10	104449836	rs61869211	A	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr10	104459079	rs59504153	TAA	T	2932.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	104465374	rs12761195	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr10	104473813	rs2248684	C	A	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	104474046	rs71019606	CCCT	C	2490.73	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:250,139:0.36:389
chr10	104474107	rs2248679	G	A	8461.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr10	104486304	rs2244647	G	C	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	104486974	rs2244524	C	T	911.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr10	104487072	rs2244518	G	T	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	104489011	rs2244254	G	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	104492707	rs2778037	G	C	5856.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	104493432	rs78400164	C	T	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:85,120:0.59:205
chr10	104493444	rs11191381	C	T	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:112,76:0.40:188
chr10	104536365	rs2254563	C	G	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	104572276	rs284861	A	G	1632.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:44,69:0.61:113
chr10	104572963	rs284860	T	C	3812.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:100,164:0.62:264
chr10	104573017	rs284859	G	T	3223.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:58,141:0.71:199
chr10	104591182	rs284849	G	T	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr10	104591393	rs17115100	G	T	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:161,94:0.37:255
chr10	104594507	rs1004467	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr10	104596924	rs6163	C	A	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:67,43:0.39:110
chr10	104596981	rs6162	G	A	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.916;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:105,52:0.33:157
chr10	104597152	rs743572	A	G	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.971;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:99,42:0.30:141
chr10	104621829	rs41287472	A	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr10	104629465	rs3740400	T	G	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:210,128:0.38:338
chr10	104629793	rs3832685	G	GCTC	1080.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:54,31:0.36:85
chr10	104636655	rs3740393	G	C	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:97,69:0.42:166
chr10	104637992	rs10786719	A	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr10	104638480	rs3740390	C	T	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:37,12:0.24:49
chr10	104660256	rs10748835	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr10	104814162	rs2275271	T	C	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=1.321;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:182,126:0.41:308
chr10	104835919	rs943037	C	T	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:150,121:0.45:271
chr10	104836047	rs943036	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr10	104849468	rs3740387	G	A	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.784;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:66,30:0.31:96
chr10	104850632	rs3736922	G	A	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:119,52:0.30:171
chr10	104850835	rs11191551	A	G	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:46,36:0.44:82
chr10	104851301	rs17094683	G	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr10	104855656	rs1926030	T	C	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:150,85:0.36:235
chr10	104860395	rs2863727	T	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	105039579	rs1163086	A	G	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr10	105046689	rs3740381	G	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr10	105063897	rs34732054	C	CT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=1.192;QD=2.89;ReadPosRankSum=3.390;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr10	105108455	rs4917387	T	C	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	105110740	rs113359610	A	AGGAGGC	3476.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,85:0.59:145
chr10	105127708	rs10883858	G	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr10	105128134	rs10883859	T	G	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=32.776;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.516;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:67,75:0.53:142
chr10	105144986	rs7069667	A	G	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	105154089	rs7911488	A	G	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:83,148:0.64:231
chr10	105165615	rs7919031	G	A	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	105176179	rs7894407	T	C	785.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:88,44:0.33:132
chr10	105179214	rs3740382	C	T	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr10	105191755	rs80307802	C	CAA	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr10	105194086	rs2986014	C	T	2457.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:83,113:0.58:196
chr10	105201565	rs2281861	G	A	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr10	105201577	rs2281860	C	T	2320.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr10	105204454	rs942900	T	C	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,37:0.66:56
chr10	105205302	rs7831	A	C	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr10	105206874	rs6580	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:33,66:0.67:99
chr10	105214932	rs729211	T	C	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr10	105215016	rs2986016	A	G	3855.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	105218252	rs2986017	A	G	17879.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.48;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,534:1.00:534
chr10	105218252	.	AGC	GGC,GGT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=260,100;NR=247,98;PP=2962,2337;QD=20;SC=CCGGCGGCCCAGCGGCCGCTT;SbPval=0.57;Source=Platypus;TC=510;TCF=261;TCR=249;TR=507,198;WE=105218262;WS=105218242;set=Platypus	GT:AF:DP	0/1:0.99:510
chr10	105218254	rs4918016	C	T	3891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=-0.469;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:323,208:0.39:531
chr10	105218359	rs2986018	T	C	10556.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr10	105233110	rs2986035	C	T	8588.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr10	105254090	rs2986041	G	T	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:2,126:0.98:128
chr10	105344451	rs11191737	G	A	8697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.17;ReadPosRankSum=0.234;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:191,423:0.69:614
chr10	105344756	rs2236209	T	C	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr10	105361816	rs4918031	T	G	7095.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	105362104	rs11191741	G	A	6215.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:122,269:0.69:391
chr10	105362209	rs4917396	T	C	14258.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr10	105363289	rs3740471	T	C	2809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=1.286;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:409,175:0.30:584
chr10	105365386	rs7088714	A	G	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	105428453	rs10533306	CAG	C	17416.73	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr10	105484018	rs45564336	T	C	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.917;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=-0.244;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr10	105495612	rs6584568	T	C	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:90,48:0.35:138
chr10	105561300	.	T	TACACACACACACACACACAC	273.79	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr10	105614884	rs4918064	A	G	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	105615074	rs10883928	C	T	4933.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:435,271:0.38:706
chr10	105615105	rs10883929	G	C	12270.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr10	105657316	rs10786775	G	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	105658588	rs2902639	G	C	739.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr10	105659826	rs2487999	T	C	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	105727656	rs67597452	AAG	A	708.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,21:0.36:59
chr10	105752229	rs2476952	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr10	105752503	rs2476953	C	T	173.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr10	105759749	rs112226841	A	ATCTC	723.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,19:0.61:31
chr10	105759778	.	G	T	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.818;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr10	105762591	rs805657	G	A	3743.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:76,166:0.69:242
chr10	105762972	rs34326537	T	C	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:88,147:0.63:235
chr10	105768158	rs805664	A	T	1223.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.74;ReadPosRankSum=1.033;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:4,58:0.94:62
chr10	105781532	rs10883961	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:111,72:0.39:183
chr10	105791929	rs805687	C	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr10	105792077	rs805688	A	G	3222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-0.854;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:85,151:0.64:236
chr10	105792205	rs813943	A	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	105793173	rs1747675	T	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	105796399	rs2274098	G	C	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:51,24:0.32:75
chr10	105796449	rs2476957	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	105796738	rs805714	A	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	105796819	rs2476958	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	105797045	.	A	ATTT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.205;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr10	105797378	rs2282437	G	A	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.179;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=1.514;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr10	105797693	rs61382109	TA	T	1036.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	105797989	rs200030951	TACACACACACACACACACAC	T	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.214;QD=9.06;ReadPosRankSum=2.289;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr10	105798872	rs2274100	T	C	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=1.195;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:99,30:0.23:129
chr10	105799216	rs2296219	G	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=-0.059;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr10	105799524	.	CCA	C	577.73	.	AC=1;AF=0.500;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr10	105799552	rs67083195	ACG	A	30.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:71,10:0.12:81
chr10	105799599	rs11191905	C	A	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:95,34:0.26:129
chr10	105800321	rs12763538	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.552;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr10	105800352	.	ATGGATAGG	A	31.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,2:0.33:6
chr10	105801253	rs4918079	G	A	1870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=5.494;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=-0.923;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:127,102:0.45:229
chr10	105803080	rs2147269	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	105805310	rs805719	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=0.487;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr10	105805328	rs77584565	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,23:0.66:35
chr10	105805436	rs805720	G	A	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr10	105805497	rs813944	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=-1.768;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:98,43:0.30:141
chr10	105806310	rs805721	C	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	105809671	rs10883963	T	C	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr10	105810400	rs805722	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.360;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr10	105811218	rs12260615	T	A	1751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-0.749;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:207,102:0.33:309
chr10	105812690	rs2274101	G	C	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:26,73:0.74:99
chr10	105813001	rs11191909	C	T	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr10	105815201	rs201385541	G	GTC	99.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=6.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=2.188;SOR=1.588;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr10	105815202	.	T	TCA	312.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.766;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:39,19:0.33:58
chr10	105815241	rs1747677	A	C	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr10	105816685	rs805696	T	C	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	105816916	rs805698	C	T	9784.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr10	105817043	rs805699	C	T	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	105817891	rs11191910	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr10	105821136	rs805704	A	T	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	105821294	rs805705	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr10	105821836	rs805706	C	T	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	105837000	rs2274106	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	105882055	rs7901021	A	C	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr10	105882765	rs10786783	A	G	569.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr10	105883395	rs1338777	A	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	105885525	rs201504294	CT	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.091;QD=3.12;ReadPosRankSum=-0.922;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr10	105901936	rs637022	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr10	105905380	rs141870801	TGAC	T	1210.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr10	105920990	rs36092125	G	GT	669.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:114,52:0.31:166
chr10	105921085	rs605712	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr10	105922056	rs35188172	GT	G	3813.73	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:208,139:0.40:347
chr10	105927460	rs17750886	C	T	7403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=1.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=-2.243;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:181,353:0.66:534
chr10	105932074	rs626708	C	T	423.88	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:2,16:0.89:18
chr10	105938913	rs60561340	CAG	C	1357.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.196;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.385;QD=30.17;ReadPosRankSum=-1.645;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chr10	105939451	rs624159	C	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr10	105942304	rs569856	T	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	105942337	rs569967	G	C	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	105945985	rs479879	A	C	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	105956776	rs584309	A	G	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	105957561	rs678292	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	105957613	rs677904	G	A	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	105967413	rs17824653	A	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:74,52:0.41:126
chr10	105967624	rs11191948	C	T	2578.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:84,118:0.58:202
chr10	105973981	rs584082	C	G	4217.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:110,192:0.64:302
chr10	105978690	rs606697	A	T	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr10	105991884	rs789577	T	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr10	106014764	rs144343542	CCGG	C	5274.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr10	106022789	rs4925	C	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	106028154	rs45596840	G	A	15480.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.74;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	106028157	rs641071	G	T	15504.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr10	106034491	rs2297235	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	106037894	rs157077	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	106039185	rs156697	A	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	106039303	rs276203	A	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	106116606	rs17754804	T	A	2545.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	106124660	rs12769756	G	T	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	106159305	rs10509772	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chr10	106207269	rs1411711	G	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	106582029	rs1490182	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	106602362	rs10884052	G	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr10	106602496	rs5787553	C	CT	5292.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr10	106675585	rs6584635	C	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:249,138:0.36:387
chr10	106865381	rs17118359	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	106907440	rs791125	C	T	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr10	106907586	rs791126	C	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	106916819	rs2297500	G	A	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr10	106961109	rs2306652	G	C	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr10	106970848	rs3214966	AG	A	1630.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,48:0.67:72
chr10	106974122	.	T	TG,TGACACA	5484.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=436;set=Intersection	GT:AF:DP	0/1:0.51:424
chr10	106974123	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=1;HapScore=1;MGOF=6;MMLQ=24;MQ=59.94;NF=86;NR=52;PP=2962;QD=20;SC=TTCCCTTTATAACACACACAC;SbPval=0.62;Source=Platypus;TC=379;TCF=230;TCR=149;TR=138;WE=106974145;WS=106974112;set=Platypus	GT:AD:AF:DP	0/1:241,138:0.36:379
chr10	106974123	.	A	ACACAC	6860.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DP=513;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.66;ReadPosRankSum=0.592;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:209,229:0.52:438
chr10	108371571	rs137930414	A	AGTTT	3030.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	108380006	.	CAG	C	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.981;QD=3.80;ReadPosRankSum=-1.314;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:49,13:0.21:62
chr10	108389249	rs1322004	T	C	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	108427682	rs66783381	CA	C	272.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.05;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	108432828	rs11193010	C	T	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	108439103	rs821929	A	C	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	108447836	rs821935	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	108466412	rs2756231	C	T	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr10	108469161	rs2756232	C	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.476;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	108469201	rs66987312	AT	A	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=-0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-0.736;QD=4.65;ReadPosRankSum=-0.062;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr10	108469237	.	C	T	110	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=27;MMLQ=27;MQ=55.91;NF=2;NR=8;PP=110;QD=14.4771212547;SC=GATGGAGTCTCGCTCTGTCGC;SbPval=0.79;Source=Platypus;TC=33;TCF=9;TCR=24;TR=10;WE=108469245;WS=108469214;set=Platypus	GT:AD:AF:DP	0/1:23,10:0.30:33
chr10	108923704	rs2993097	A	G	8225.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:231,380:0.62:611
chr10	111440605	rs7898586	A	G	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	111440719	rs7915504	T	A	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	111625108	rs483072	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	111630731	rs612155	G	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	111633025	rs642938	A	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	111646147	rs623980	A	G	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr10	111667702	rs686155	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	111683280	rs145751207	CGGCG	C	1764.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	111701279	rs143311818	C	T	1156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=4.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.270;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:125,63:0.34:188
chr10	111878510	rs12268910	T	G	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:228,120:0.34:348
chr10	111886089	rs3731566	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr10	111890362	rs13306109	C	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr10	111987960	rs61745504	C	T	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:235,114:0.33:349
chr10	112004481	rs113816392	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr10	112038848	rs41291902	A	G	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr10	112044553	rs5787843	G	GTTC	760.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,48:0.63:76
chr10	112044560	rs33957950	T	TTC	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.205;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=-1.140;QD=0.40;ReadPosRankSum=2.279;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:71,18:0.20:89
chr10	112044842	rs16448	TAAAAC	T	944.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr10	112054908	rs7074311	C	A	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	112058426	rs2233934	T	C	970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=0.686;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:166,68:0.29:234
chr10	112063216	rs2233931	C	G	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr10	112266822	rs1889566	GC	AT	18701.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr10	112327678	rs55750861	C	CA	4610.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	112328838	rs4917577	C	G	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	112349204	rs2419572	A	G	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	112356331	rs7075340	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	112360315	.	G	GT	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.063;QD=2.02;ReadPosRankSum=1.187;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:90,37:0.29:127
chr10	112361870	rs2419565	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr10	112362019	rs2039874	G	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	112404302	rs35141404	G	A	2260.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chr10	112543217	rs6585012	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr10	112544063	rs7898438	A	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr10	112557514	rs6585014	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=0.206;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr10	112570243	rs11195338	T	C	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr10	112572458	rs1417635	G	C	11526.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr10	112579663	rs11195343	C	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	112580880	rs10787283	C	T	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr10	112583189	rs201149204	CTTTTTTTTTTTTTT	C,CT	2341.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=13.536;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.19;MQRankSum=1.152;QD=28.91;ReadPosRankSum=0.185;SOR=2.130;set=HC	GT:AD:AF:DP	1/2:8,32,41:0.40,0.51:81
chr10	112590810	rs7070640	G	C	6789.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	112595719	rs942077	G	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	112641053	rs7081726	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	112697017	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-0.555;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:96,26:0.21:122
chr10	112764594	rs1980869	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	113913222	rs2297991	T	C	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	113915574	rs5787948	C	CA	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-1.098;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr10	113917085	rs2254537	T	A	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr10	113917982	rs6585140	C	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	113920465	rs2277207	G	A	8415.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr10	113920652	rs3824626	T	C	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr10	113921354	rs2250802	G	A	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	113923595	rs10736219	C	G	11959.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,451:1.00:451
chr10	113926012	rs10749108	G	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	113928487	rs2251579	A	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	113935379	rs10787428	T	C	6295.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	113937941	rs2487294	G	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	113940329	rs2792751	T	C	7763.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr10	114045835	rs147615429	C	A	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=0.723;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:298,111:0.27:409
chr10	114053546	rs726009	C	G	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:48,94:0.66:142
chr10	114059064	rs41306846	A	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr10	114059330	rs11279253	TCTCTGTTTTC	T	3081.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr10	114061979	rs10749114	G	A	1906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=-0.218;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:27,86:0.76:113
chr10	114136349	rs2277208	G	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr10	114168056	.	CA	C	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.116;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.145;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:80,36:0.31:116
chr10	114171385	rs3831106	T	TAC	467.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.314;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=1.022;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr10	114181683	rs2255740	A	G	2884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.848;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:75,128:0.63:203
chr10	114185856	rs34341101	T	TG	850.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr10	114186624	rs2256368	G	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:44,97:0.69:141
chr10	114192285	rs2306158	G	A	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:40,67:0.63:107
chr10	114197982	rs3736059	A	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr10	114200355	rs2306159	G	A	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr10	114202219	rs11195961	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	114224502	rs3740143	C	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr10	114427978	rs17353359	G	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:170,72:0.30:242
chr10	114496687	rs12770115	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,16:0.29:55
chr10	114710869	rs72101402	AC	A	975.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,44:0.44:101
chr10	114849399	rs4917644	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr10	114903859	.	C	CTGTG	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.902;QD=15.73;ReadPosRankSum=0.050;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr10	115327193	rs2286745	A	G	945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-0.324;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:82,55:0.40:137
chr10	115332413	rs10885477	C	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=0.034;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:109,62:0.36:171
chr10	115334124	rs3740530	C	T	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:72,136:0.65:208
chr10	115335843	rs911709	A	G	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	115336758	rs2302374	A	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,42:0.72:58
chr10	115338615	rs11575684	A	G	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr10	115340492	rs2286742	G	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:26,51:0.66:77
chr10	115341545	rs2181082	G	C	753.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr10	115343803	rs911703	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr10	115343831	rs911701	A	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr10	115343852	rs911700	C	G	1382.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr10	115345850	rs3781378	T	C	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr10	115349397	rs11196388	AG	A	2220.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr10	115357078	rs12241995	G	A	2172.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:35,93:0.73:128
chr10	115357131	rs113389465	CA	C	931.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr10	115370113	rs11333099	TA	T	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.361;QD=1.01;ReadPosRankSum=-0.026;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr10	115370254	rs12243176	A	G	11834.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr10	115370274	rs10749138	T	C	11490.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr10	115371873	rs1539588	G	T	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr10	115373851	rs2419850	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	115375528	rs11196397	C	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:50,67:0.57:117
chr10	115377290	rs77678145	T	C	1858.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:169,101:0.37:270
chr10	115381747	rs868738	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:132,70:0.35:202
chr10	115384467	rs3127086	C	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.193;SOR=0.417;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr10	115386088	rs3127087	C	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:62,35:0.36:97
chr10	115388588	rs2286741	A	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr10	115388944	rs2286740	C	T	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=9.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=-1.698;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:44,22:0.33:66
chr10	115389356	rs2286736	G	A	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-1.042;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:46,36:0.44:82
chr10	115389366	rs2286735	G	A	1536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=6.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=-0.948;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:54,45:0.45:99
chr10	115393929	rs3189030	G	A	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:89,164:0.65:253
chr10	115400958	rs1539592	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	115400972	rs1539593	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	115401031	rs5788038	AT	A	2585.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	115401081	rs3127105	T	C	6421.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr10	115401264	rs3121465	A	G	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	115405568	rs56017080	C	T	548.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.045;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.22;ReadPosRankSum=-0.324;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr10	115405615	rs3127106	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=25.61;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr10	115405664	rs3121478	C	T	4069.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.422;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.185;QD=25.76;ReadPosRankSum=-0.241;SOR=0.239;set=HC	GT:AD:AF:DP	1/1:1,157:0.99:158
chr10	115405703	rs35741231	G	GAA	3010.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;QD=30.11;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	115405791	rs3121479	A	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	115406485	rs3121483	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	115410234	rs2185913	T	C	2597.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:50,110:0.69:160
chr10	115411614	rs2154028	A	G	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr10	115412686	rs3121488	G	A	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.38;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	115412686	.	GC	AC,AT	530	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=22;MQ=60.0;NF=47,19;NR=19,8;PP=530,269;QD=8.55713958405;SC=AAGCACCCAGGCACTCACTTG;SbPval=0.53;Source=Platypus;TC=66;TCF=47;TCR=19;TR=66,27;WE=115412695;WS=115412676;set=Platypus	GT:AF:DP	0/1:1.00:66
chr10	115412687	rs3127113	C	T	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=1.852;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr10	115417289	rs1891762	G	A	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	115422474	rs3127122	A	G	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=1.878;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:353,135:0.28:488
chr10	115423094	rs12770981	G	C	5072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-0.719;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:118,238:0.67:356
chr10	115423695	rs3127124	A	C	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:182,93:0.34:275
chr10	115439530	rs28411397	G	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr10	115439569	rs7921977	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr10	115481018	rs3814231	C	T	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr10	115489152	rs2227310	C	G	5376.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:157,247:0.61:404
chr10	115489167	rs2227309	G	A	5529.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:170,263:0.61:433
chr10	115515120	rs3981351	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr10	115525175	rs4631835	T	C	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.782;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=4.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.350;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:161,71:0.31:232
chr10	115528369	.	T	G	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.07;ReadPosRankSum=-0.230;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	115533975	rs3750903	T	C	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,19:0.27:71
chr10	115534200	rs3750902	G	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr10	115535426	rs7899829	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr10	115535465	rs12768105	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:26,42:0.62:68
chr10	115537960	rs2900990	C	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:144,58:0.29:202
chr10	115540311	rs11196482	T	G	427.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,25:0.31:81
chr10	115540411	rs11196483	T	C	1708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.882;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:220,106:0.33:326
chr10	115609915	rs3750898	C	G	6822.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	115618246	rs2301180	T	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:8,53:0.87:61
chr10	115644040	rs7913176	G	A	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.79;ReadPosRankSum=1.334;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:58,105:0.64:163
chr10	115675025	rs7895609	G	A	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr10	115805056	rs1801253	G	C	7455.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:243,355:0.59:598
chr10	116021201	.	A	G	1138.77	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:20,44:0.69:64
chr10	116058933	rs1889450	G	A	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	116059086	rs199911657	G	T	2822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-0.608;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:85,138:0.62:223
chr10	116060194	rs3214266	A	AG	6022.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:2,220:0.99:222
chr10	116060387	rs2286396	T	C	10695.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr10	116068176	rs581327	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr10	116073696	rs3813722	C	T	9426.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	116075228	rs694883	A	G	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	116075271	rs377755078	T	TCC	2605.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	116079505	rs10885547	G	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	116085639	rs75926928	G	A	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:15,60:0.80:75
chr10	116085784	rs74928179	C	CCCG	14841.73	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr10	116091555	rs10787524	T	C	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr10	116100320	rs4752395	T	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	116203906	rs72826956	A	C	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.054;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.065;QD=22.00;ReadPosRankSum=-1.444;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:29,80:0.73:109
chr10	116203911	rs11338035	GA	G	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.723;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=6.538;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.857;QD=5.75;ReadPosRankSum=0.207;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:35,47:0.57:82
chr10	116203974	rs10160093	A	G	523.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr10	116205267	rs6585279	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,79:0.64:123
chr10	116209970	rs11384652	T	TA	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=-0.300;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr10	116211246	rs2145895	A	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr10	116222749	rs7920878	G	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.42;ReadPosRankSum=1.103;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:25,48:0.66:73
chr10	116225365	rs7899255	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr10	116228048	rs1815248	G	T	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr10	116233824	rs11814528	C	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr10	116251686	rs12784116	T	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:18,77:0.81:95
chr10	116251753	rs34507585	G	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr10	116304958	rs10885579	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-1.978;SOR=0.374;set=HC	GT:AD:AF:DP	0/1:29,7:0.19:36
chr10	116304971	rs2483595	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	116307340	rs41284354	C	G	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:21,70:0.77:91
chr10	116307504	rs2247528	A	G	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr10	116335246	rs985273	G	A	4751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=4.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=0.145;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:131,225:0.63:356
chr10	116373275	rs2497668	C	T	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:53,20:0.27:73
chr10	116391739	rs11196817	A	C	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:47,29:0.38:76
chr10	116593175	rs11196939	C	T	2635.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:92,124:0.57:216
chr10	116596071	rs17095662	A	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,54:0.57:95
chr10	116605103	rs2420069	A	G	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr10	116606173	rs3834423	C	CT	1056.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr10	116615045	rs3180654	T	C	2857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.006;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=-2.528;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:93,143:0.61:236
chr10	116621154	rs34064819	C	A	1459.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,65:0.62:104
chr10	116622339	rs41284358	A	G	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chr10	116659253	rs10885629	A	G	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:51,59:0.54:110
chr10	116719543	rs7099565	G	A	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:54,91:0.63:145
chr10	116730337	rs6585309	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr10	116853177	rs2484265	C	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,9:0.75:12
chr10	116856543	rs1264777	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	116889272	rs77597486	A	G	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-0.794;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:112,78:0.41:190
chr10	116931101	rs3086141	C	CTT	1977.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr10	117075175	rs1953758	G	A	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.12;ReadPosRankSum=-2.178;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr10	117226880	rs17723399	T	G	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr10	117278988	rs6421370	G	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	117309098	rs1336108	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=0.084;SOR=1.535;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr10	117357169	rs11197326	G	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	117357264	rs11197327	G	A	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=-2.518;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,22:0.73:30
chr10	117486910	rs2286631	T	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:23,29:0.56:52
chr10	117856379	rs66851912	TGCACAC	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.945;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.064;MLEAC=1;MLEAF=0.500;MQ=61.50;MQRankSum=-0.383;QD=1.14;ReadPosRankSum=-0.642;SOR=1.712;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr10	117856388	rs72411923	ACACG	A	821.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:11,30:0.73:41
chr10	117884950	rs2245020	G	A	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	117971244	rs8192663	T	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr10	117986207	rs7094346	G	T	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=26.43;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	118015007	rs56869104	GA	G	1618.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.559;QD=8.66;ReadPosRankSum=-0.421;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:75,112:0.60:187
chr10	118015029	rs57732230	A	C	5636.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:102,183:0.64:285
chr10	118031349	rs1362216	G	T	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=0.816;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:75,50:0.40:125
chr10	118031376	rs2532691	C	A	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	118031647	rs8192661	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	118187399	rs10787669	T	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	118187405	rs10787670	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	118215150	.	C	CT	56	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.7331;HP=10;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=4;NR=0;PP=56;QD=17.0;SC=CATGTTGATCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=7;TCF=6;TCR=1;TR=4;WE=118215158;WS=118215140;set=Platypus	GT:AD:AF:DP	0/1:3,4:0.57:7
chr10	118231360	rs10736251	G	A	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	118231363	rs1897519	A	G	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.21;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr10	118231406	rs10749217	A	C	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	118310802	rs34277255	CA	C	707.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.740;QD=9.69;ReadPosRankSum=-0.181;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:16,57:0.78:73
chr10	118313116	rs2915749	T	C	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:92,51:0.36:143
chr10	118313265	rs2915748	T	C	1797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=2.020;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:208,108:0.34:316
chr10	118313456	rs376199043	T	TA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.316;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.584;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr10	118351905	rs1867991	A	C	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr10	118355695	rs2915765	A	T	8680.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:186,398:0.68:584
chr10	118357490	rs2915764	C	T	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr10	118359461	rs17735613	A	G	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr10	118359548	rs3816355	T	C	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	118363642	rs3010501	T	C	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:51,74:0.59:125
chr10	118364818	rs2915754	G	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr10	118364842	rs2915753	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr10	118368493	rs201976882	CCAAAA	C,ACAAAA	4314.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=2.144;MLEAC=1,1;MLEAF=0.500,0.500;MQ=62.93;MQRankSum=0.592;QD=20.95;ReadPosRankSum=0.879;SOR=1.525;set=HC	GT:AD:AF:DP	1/2:4,118,84:0.57,0.41:206
chr10	118368606	rs1049125	T	C	5731.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:165,272:0.62:437
chr10	118380345	rs12415178	C	T	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr10	118380387	rs12412456	A	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:34,50:0.60:84
chr10	118380511	rs3010502	A	G	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=26.46;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	118380629	rs3214321	TC	T	948.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	118383382	rs12256398	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:21,76:0.78:97
chr10	118383463	rs56189579	A	AG	7142.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	118383703	rs2286776	C	T	280.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr10	118386325	rs9787637	C	A	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr10	118387137	rs7092580	A	G	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	118387148	rs12768167	C	T	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.51;ReadPosRankSum=-1.384;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	118387152	rs12768516	G	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=-0.963;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr10	118387282	rs11544712	A	G	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:69,141:0.67:210
chr10	118387454	rs12768804	C	T	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:11,24:0.69:35
chr10	118389690	rs12763549	A	G	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr10	118391063	rs10885995	C	A	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr10	118394551	rs2286779	G	C	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr10	118396278	rs11197776	G	T	2071.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.28;ReadPosRankSum=-0.468;SOR=1.131;set=HC	GT:AD:AF:DP	1/1:3,90:0.97:93
chr10	118397884	rs4751995	A	G	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr10	118397894	rs4751996	A	G	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	118397971	rs10885997	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr10	118398046	rs7910135	C	A	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	118404620	rs2301179	A	G	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	118404700	rs2301178	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:52,105:0.67:157
chr10	118436068	rs2166634	G	T	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr10	118466664	rs66564530	GCACA	G	352.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-0.060;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr10	118501765	rs3095121	A	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	118502055	rs11592166	G	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.965;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	118616110	rs7083543	C	T	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:61,111:0.65:172
chr10	118620459	rs11197835	A	C	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:233,103:0.31:336
chr10	118628036	rs1637571	G	A	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr10	118633548	rs1637574	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr10	118643670	rs2257791	G	A	5180.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr10	118643962	rs17095392	T	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr10	118646129	rs2531685	G	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:86,46:0.35:132
chr10	118667346	rs2531690	A	C	2759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=3.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=-0.672;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:247,153:0.38:400
chr10	118667454	rs74161333	T	A	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:136,209:0.61:345
chr10	118671040	rs74159005	T	C	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:101,164:0.62:265
chr10	118671455	rs74159007	A	G	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr10	118689526	.	T	TA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.061;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr10	118699956	rs74159015	T	C	1635.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chr10	118708315	rs10595325	GAGA	G	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr10	118708416	rs7895011	G	A	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:41,47:0.53:88
chr10	118711538	rs117312050	A	T	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.392;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr10	118897607	.	CAA	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.465;ClippingRankSum=-0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.84;ReadPosRankSum=-1.133;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr10	118897674	rs200079110	C	A	76.18	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,4:0.80:5
chr10	119001151	rs2619094	A	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	119013080	rs2256299	T	G	188.78	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	119014023	rs2072362	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	119014931	rs363420	C	T	10317.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr10	119014948	rs363343	C	A	10056.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	119026401	rs363266	T	C	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	119026566	rs363227	T	C	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr10	119027123	rs363228	C	A	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	119027411	rs363271	G	T	279.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	119029515	rs363230	C	T	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr10	119029744	rs363272	G	A	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	119042761	rs363293	C	T	4226.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	119043554	rs363294	C	T	4402.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:99,194:0.66:293
chr10	119307524	rs2240776	T	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	119768551	rs7923321	C	T	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,287:1.00:287
chr10	119768838	rs143170621	A	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr10	119774577	rs141500760	G	A	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.79;ReadPosRankSum=-1.358;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:94,145:0.61:239
chr10	119793629	rs2928118	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	120070427	rs4751651	G	T	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.851;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chr10	120070709	rs3213691	G	A	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr10	120070843	rs34120011	G	GA	992.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	120081948	rs853911	C	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	120353910	rs1613448	T	C	6522.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	120445794	rs752483	G	A	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:68,30:0.31:98
chr10	120460715	rs2274314	G	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:41,23:0.36:64
chr10	120796572	rs11336519	TC	T	732.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.32;ReadPosRankSum=0.743;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:3,37:0.93:40
chr10	120803746	rs3740553	T	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	120817450	rs10886375	A	G	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr10	120818609	rs6585524	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	120819453	rs10787901	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr10	120819458	rs10787902	T	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.04;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	120820224	rs3740555	C	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.714;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	120828969	rs7908387	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	120829210	rs147603386	C	T	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.20;ReadPosRankSum=-0.971;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,31:0.79:39
chr10	120832872	rs1397616	T	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	120864868	rs1511033	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	120883117	rs372448900	CT	C	1802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.879;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=5.351;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.929;QD=8.08;ReadPosRankSum=0.472;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:64,159:0.71:223
chr10	120896027	rs11198799	G	A	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.29;QD=25.79;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr10	120905940	rs138059828	CGTGT	C,CGTGTGT	1562.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=112;set=Intersection	GT:AF:DP	0/1:0.61:75
chr10	120905972	rs7075068	T	C	1895.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,49:0.60:81
chr10	120905976	rs33947324	C	CGT	1868.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr10	120907173	rs150807690	T	TG	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr10	120907203	rs61874342	C	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr10	120917269	rs2420494	A	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr10	120917445	rs2275111	G	A	5547.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:151,254:0.63:405
chr10	120919179	rs3740558	G	A	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:58,94:0.62:152
chr10	120919246	rs2181118	T	C	6949.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr10	120920588	rs10749291	T	C	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:55,105:0.66:160
chr10	120923552	rs368539311	CA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.29;ReadPosRankSum=-0.296;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	120923780	rs35023478	C	CTT	617.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.780;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.17;ReadPosRankSum=1.303;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:4,30:0.88:34
chr10	120924874	rs933092	G	C	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr10	120928938	rs2271362	C	T	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	120933324	rs3758609	G	A	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	121093160	rs10886461	A	C	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr10	121137660	rs78955388	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	121140511	rs4751714	A	G	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr10	121140534	rs2275037	C	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	121182580	rs11198918	T	C	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr10	121190113	rs915120	T	C	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.67;ReadPosRankSum=-0.316;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr10	121196335	rs2230349	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:80,47:0.37:127
chr10	121199189	rs2245364	T	C	5484.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:135,245:0.64:380
chr10	121199381	rs12721552	G	A	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:105,51:0.33:156
chr10	121199437	rs915116	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	121201626	rs2275044	T	C	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr10	121212373	rs2297640	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:77,42:0.35:119
chr10	121212405	rs2297641	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr10	121287019	rs3009921	G	A	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr10	121302244	rs77190301	G	A	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=0.684;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr10	121338401	rs4752334	T	A	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr10	121342224	rs74353857	G	C	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:26,52:0.67:78
chr10	121411275	.	A	G	7714.77	.	AC=1;AF=0.500;AN=2;DP=572;set=Intersection	GT:AD:AF:DP	0/1:217,355:0.62:572
chr10	121429256	rs2240777	A	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr10	121435955	rs196294	A	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:107,61:0.36:168
chr10	121436068	rs3858339	T	G	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:180,119:0.40:299
chr10	121436286	rs3858340	C	T	1699.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:159,88:0.36:247
chr10	121436362	rs196295	A	G	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:120,73:0.38:193
chr10	121551581	rs2289306	A	C	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:212,129:0.38:341
chr10	121564859	rs2273748	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr10	121565015	rs2273749	C	G	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr10	121571507	rs3781503	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=-0.940;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chr10	121582556	rs2289307	T	C	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:129,67:0.34:196
chr10	121586882	rs3188055	A	G	3618.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:329,184:0.36:513
chr10	121597897	rs11199103	A	G	169.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr10	121618787	rs71924981	TAC	T	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.89;ReadPosRankSum=-2.515;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr10	121657801	rs144326454	CTG	C	671.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr10	121663483	rs2475304	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr10	121678896	rs2475300	C	G	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr10	121679013	rs2475298	A	G	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=3.596;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:60,80:0.57:140
chr10	121685448	rs6585564	A	T	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr10	121717932	rs11199132	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr10	121717956	rs34665773	GT	G	1292.14	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:12,77:0.87:89
chr10	121718112	rs11199134	C	T	1520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-1.042;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,70:0.64:110
chr10	122216790	rs10886691	A	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:56,101:0.64:157
chr10	122263555	rs2478418	A	T	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	122273276	rs5788426	CT	C	1211.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr10	122348969	rs1047369	C	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr10	122619466	rs10563638	TACAC	T	2174.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:21,57:0.73:78
chr10	122622121	rs3816173	A	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr10	122624679	rs10886789	G	A	2859.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:88,132:0.60:220
chr10	122626038	rs2289335	C	T	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:45,74:0.62:119
chr10	122638073	rs1992274	T	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr10	122640168	rs11453234	C	CA	118.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr10	122640243	rs4751805	T	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;MQ=60.45;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr10	122643597	rs4752469	C	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.936;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:16,27:0.63:43
chr10	122643699	rs4752470	G	C	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-1.216;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:47,69:0.59:116
chr10	122645376	rs7899928	A	T	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr10	122646113	rs7079527	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr10	122646126	rs7079781	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr10	122646160	rs11395714	G	GA	683.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr10	122646379	rs7079830	A	G	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:57,96:0.63:153
chr10	122648750	rs141904743	T	TTTTTGTTTTGTTTTG	1735.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,43:0.58:74
chr10	122648753	.	T	C	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.990;QD=4.82;ReadPosRankSum=1.119;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:66,31:0.32:97
chr10	122659490	rs2289336	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:23,50:0.68:73
chr10	122660701	rs11199635	C	T	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr10	122663585	rs1652727	G	A	1822.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.42;ReadPosRankSum=-0.850;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:25,86:0.77:111
chr10	122664388	rs10886798	C	T	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:55,108:0.66:163
chr10	122664694	rs10788127	G	A	42.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.70;ReadPosRankSum=-1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr10	122664967	rs1866516	C	T	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr10	122665285	rs1652726	A	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	122665310	rs3740306	T	A	873.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr10	123239112	rs1047057	G	A	2298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.589;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:50,106:0.68:156
chr10	123243197	rs2278202	G	A	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-0.817;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:24,63:0.72:87
chr10	123246732	rs148450955	TTTCTAAGGCCAGCTCCTGCACC	T	617.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr10	123247037	rs2981461	C	T	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=2.189;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr10	123247044	rs2981460	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.69;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	123247669	rs111564057	AC	A	391.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:52,17:0.25:69
chr10	123277666	rs60468962	G	GTA	624.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr10	123277742	rs2420942	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	123279745	rs2981448	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	123298158	rs1047100	T	C	3768.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:89,168:0.65:257
chr10	123549691	rs35350755	T	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr10	123596254	rs4237536	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	123673339	rs10749435	T	C	9697.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr10	123721624	rs71022875	TA	T	287.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=0.667;QD=13.08;ReadPosRankSum=0.523;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr10	123722951	rs59415272	CT	C	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=0.720;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr10	123724701	rs34074742	AC	A	1380.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	123724767	rs4752626	T	G	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr10	123730685	rs371483590	T	TAA	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=-0.473;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr10	123810136	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:19,4:0.17:23
chr10	123842065	rs2459103	A	G	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.571;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr10	123842131	rs17102996	T	C	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr10	123842523	rs11200385	G	A	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:272,172:0.39:444
chr10	123843257	rs200855604	G	C	5261.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:119,246:0.67:365
chr10	123844503	rs10887063	C	T	1297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=7.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-0.914;SOR=0.945;set=HC	GT:AD:AF:DP	0/1:211,79:0.27:290
chr10	123845211	rs11200387	G	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:206,138:0.40:344
chr10	123845322	rs7073433	T	C	8235.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr10	123845897	rs1106992	G	C	2675.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:260,141:0.35:401
chr10	123846288	rs4752642	G	A	2702.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:196,137:0.41:333
chr10	123846485	rs4751871	A	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:167,90:0.35:257
chr10	123846860	rs11599291	C	T	2891.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:258,154:0.37:412
chr10	123847355	rs10788237	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:165,93:0.36:258
chr10	123847870	rs11442094	A	AT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.52;ReadPosRankSum=-0.275;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr10	123976029	rs2281670	A	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=-3.166;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr10	123976391	rs10444046	C	A	11159.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,415:1.00:416
chr10	123984442	rs2281671	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr10	123986118	rs34932234	TA	T	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=1.539;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:39,29:0.43:68
chr10	123996970	rs61753077	G	A	6311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.09;ReadPosRankSum=-0.489;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:75,158:0.68:233
chr10	123996976	rs2295879	G	A	6368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.22;ReadPosRankSum=-0.260;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:74,160:0.68:234
chr10	124001539	rs11200496	G	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:39,57:0.59:96
chr10	124008927	rs2273794	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:13,34:0.72:47
chr10	124008959	rs2273795	G	T	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr10	124009261	rs10887111	G	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr10	124034528	rs7096744	G	T	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr10	124034703	rs7080859	T	C	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:48,98:0.67:146
chr10	124034779	rs7097124	G	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr10	124036141	rs6585808	T	C	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr10	124036190	rs7086389	T	C	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr10	124036226	rs7086403	T	C	1490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-1.530;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:37,69:0.65:106
chr10	124036494	rs7090214	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr10	124036543	rs7072288	C	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr10	124043629	rs7098436	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr10	124066652	rs7082865	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr10	124066908	rs140509324	C	G	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr10	124089036	rs2421013	G	A	2169.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:55,98:0.64:153
chr10	124152936	rs3838776	G	GA	664.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	124159835	rs9988734	A	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.01;ReadPosRankSum=1.725;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:96,44:0.31:140
chr10	124175273	rs4751892	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	124176452	rs4612730	G	A	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=0.786;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:36,49:0.58:85
chr10	124183732	rs4405249	T	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	124186367	rs2292625	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.464;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr10	124186714	rs2292626	C	T	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	124189010	rs10591719	TTGTGTG	T	941.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.302;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.198;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.15;ReadPosRankSum=-1.617;SOR=1.651;set=HC	GT:AD:AF:DP	0/1:12,27:0.69:39
chr10	124189197	rs1045216	A	G	4452.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:105,210:0.67:315
chr10	124214251	rs10490923	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr10	124216384	rs72511653	C	CTA	1076.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.43;ReadPosRankSum=1.612;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr10	124216397	rs36213074	T	C	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.13;ReadPosRankSum=2.191;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr10	124216410	rs7088128	A	G	697.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=0.887;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:50,44:0.47:94
chr10	124266991	rs147948338	GTTGT	G	1398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.376;QD=26.39;ReadPosRankSum=0.071;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:16,37:0.70:53
chr10	124271589	rs2672586	G	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.92;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr10	124271589	.	GGAGTCG	AGAGTCA,AGAGTCG	433	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=25;MQ=59.81;NF=18,26;NR=15,26;PP=433,167;QD=14.7414507534;SC=AGCGTGAGTTGGAGTCGTTTT;SbPval=0.7;Source=Platypus;TC=52;TCF=26;TCR=26;TR=33,52;WE=124271603;WS=124271579;set=Platypus	GT:AF:DP	0/1:0.63:52
chr10	124271595	rs2272599	G	A	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.577;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=27.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=1.019;SOR=0.007;set=HC	GT:AD:AF:DP	0/1:12,40:0.77:52
chr10	124320194	rs2981745	T	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr10	124325409	rs3019515	T	G	4954.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.221;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.032;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.02;ReadPosRankSum=-0.794;SOR=0.142;set=HC	GT:AD:AF:DP	1/1:2,196:0.99:198
chr10	124325569	rs3019516	A	G	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	124325631	rs2981768	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	124329580	rs11524819	C	A	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.13;SOR=1.808;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr10	124329583	rs11524820	G	A	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.774;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr10	124329672	rs3740220	TC	CT	9800.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	124329710	rs11523871	C	A	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr10	124329746	rs3740222	A	T	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr10	124329801	rs3740223	G	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr10	124330240	rs2981790	A	G	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	124330252	rs2981791	A	G	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	124330427	rs3013236	C	T	8347.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr10	124331867	rs7084792	C	T	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr10	124331944	rs2277229	C	T	7535.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr10	124331957	rs2277230	T	C	7250.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=45.04;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr10	124331963	rs2277231	A	G	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=44.82;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	124332035	rs2277232	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	124333308	rs2277235	G	A	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr10	124335866	rs1985025	C	T	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	124389296	rs3013177	C	G	1370.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,53:0.73:73
chr10	124399467	rs2261655	C	T	251.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr10	124399985	rs2261660	G	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:61,103:0.63:164
chr10	124402677	rs1052715	A	G	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:164,247:0.60:411
chr10	124402944	rs8441	G	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr10	124436530	rs3019500	G	T	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr10	124438686	.	C	T	74.77	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr10	124457452	rs2947594	C	T	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:96,131:0.58:227
chr10	124594153	rs11248321	A	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	124595874	rs11365591	GA	G	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.132;QD=5.09;ReadPosRankSum=-1.140;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,18:0.60:30
chr10	124600558	.	A	G	968.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr10	124610027	rs1891110	G	A	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	124648150	rs10902838	A	G	9244.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr10	124648285	rs10902839	G	A	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr10	124648367	.	CT	C	117.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr10	124653996	rs12255784	T	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	124654345	rs35248586	CT	C	985.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr10	124697198	rs10794580	G	A	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr10	124711632	rs9804347	T	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr10	124742586	rs3736585	G	A	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	124742683	rs3736584	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	124742792	rs3736583	G	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	124742895	rs3736582	G	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr10	124746801	rs7096614	T	G	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	124749740	rs11190	A	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr10	124768583	rs12263012	G	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	124787047	rs10794584	T	C	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr10	124787118	rs10902863	G	A	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr10	124810746	.	C	CT	360	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=10;HapScore=2;MGOF=21;MMLQ=24;MQ=60.0;NF=1;NR=23;PP=360;QD=15.5;SC=GTAATTCAGCCTTTTTTTTTT;SbPval=0.57;Source=Platypus;TC=28;TCF=1;TCR=27;TR=24;WE=124810754;WS=124810736;set=Platypus	GT:AD:AF:DP	1/1:4,24:0.86:28
chr10	124812487	rs2421166	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr10	124812685	rs11307362	AT	A	1778.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:5,97:0.95:102
chr10	125425822	rs10902974	T	G	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	125426412	rs12263344	A	G	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr10	125426565	rs4980313	G	C	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	125426627	rs3808964	G	T	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr10	125447705	rs1878166	A	G	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr10	125506302	rs7088479	T	C	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	125521533	rs10794566	G	A	8388.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr10	125521590	rs10794567	G	A	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr10	125521721	rs10751743	G	A	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr10	125521751	rs10794568	C	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	125526689	rs1896392	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	125557769	rs11356678	GA	G	226.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=15.12;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr10	125602021	rs10794571	C	T	427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=-1.309;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:81,31:0.28:112
chr10	125602943	rs6599625	G	A	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.714;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.625;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.745;QD=6.88;ReadPosRankSum=0.641;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:152,92:0.38:244
chr10	125602948	rs5788632	A	AT	444.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=6.162;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=0.000;QD=3.62;ReadPosRankSum=1.297;SOR=1.392;set=HC	GT:AD:AF:DP	0/1:75,48:0.39:123
chr10	125622250	rs11299200	CA	C	7770.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr10	125650793	rs28513406	A	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=9.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.00;ReadPosRankSum=1.577;SOR=0.114;set=HC	GT:AD:AF:DP	0/1:26,23:0.47:49
chr10	125673492	rs7893288	A	G	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:118,62:0.34:180
chr10	125673547	rs4329614	T	G	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr10	125780752	rs5788645	CG	C	527.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=9.26;ReadPosRankSum=-0.960;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr10	126086730	rs2459217	G	A	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr10	126089656	rs2459215	T	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	126089703	rs2491158	G	A	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr10	126090430	rs17619406	A	G	1959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.243;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=3.253;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:334,127:0.28:461
chr10	126090465	rs17681531	T	A	1703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=0.229;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:248,106:0.30:354
chr10	126090562	rs2491159	T	C	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	126093991	rs9422807	T	C	2443.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	126150338	rs2459213	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr10	126150388	rs2491156	C	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr10	126172863	rs6597801	A	G	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:107,63:0.37:170
chr10	126185416	rs41314420	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr10	126185451	rs10794134	T	C	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr10	126185618	rs3824810	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:145,89:0.38:234
chr10	126185675	rs74160914	G	C	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:81,52:0.39:133
chr10	126185707	rs3824809	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr10	126186771	rs17620824	A	G	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr10	126384610	rs10901807	G	A	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr10	126395123	rs7897256	T	C	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr10	126471329	rs111307876	C	A	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr10	126471382	rs35267378	C	CA	99.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.371;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=-1.133;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr10	126480556	rs10901821	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr10	126505045	rs77845805	T	C	101.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr10	126505062	rs11451694	T	TA	420	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr10	126517243	.	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=2.821;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-1.656;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr10	126517989	rs2303611	G	A	4225.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:109,194:0.64:303
chr10	126518142	rs41300560	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr10	126519852	rs75786278	C	T	1892.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:178,107:0.38:285
chr10	126629167	rs143159305	A	AT	650.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr10	126629204	rs7074163	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr10	126655429	.	G	A	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=2.386;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=0.651;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr10	126660781	rs3802700	A	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	126662451	rs3740534	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	126670356	rs17152433	G	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:54,91:0.63:145
chr10	126671673	rs2241541	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-1.922;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr10	126678122	rs140913543	GT	G	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.033;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=16.444;MLEAC=1;MLEAF=0.500;MQ=52.78;MQRankSum=-3.004;QD=4.15;ReadPosRankSum=-1.601;SOR=0.011;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr10	126678128	.	T	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.818;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=14.262;MLEAC=1;MLEAF=0.500;MQ=53.75;MQRankSum=-2.889;QD=3.46;ReadPosRankSum=-1.910;SOR=0.034;set=HC	GT:AD:AF:DP	0/1:43,9:0.17:52
chr10	126686827	rs1982225	T	A	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr10	126715075	rs3781413	T	C	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr10	126715154	rs3781412	A	G	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr10	126715159	.	A	AGCCGCAGGCTGGGGCTGCAGG	1647.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr10	126715436	rs3781411	C	T	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:92,151:0.62:243
chr10	126715629	rs3781409	C	T	2000.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:154,100:0.39:254
chr10	126727353	rs2289431	C	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr10	127265374	rs11244568	T	C	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr10	127344489	rs41307583	C	T	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:40,82:0.67:122
chr10	127414473	.	TA	T	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=5.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=-1.282;SOR=2.062;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr10	127426835	rs3943225	G	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr10	127431047	rs72839211	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr10	127441590	rs11244634	G	A	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr10	127445552	rs117009922	T	A	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.639;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.519;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr10	127460753	rs7922546	G	A	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:25,80:0.76:105
chr10	127462525	rs10901425	A	G	7480.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:257,356:0.58:613
chr10	127495868	rs11244661	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr10	127504660	rs2366044	A	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr10	127548587	rs1539315	C	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	127584957	.	A	T	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.942;QD=2.65;ReadPosRankSum=-0.168;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:51,13:0.20:64
chr10	127584978	rs5006357	A	G	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chr10	127585015	rs79042596	G	T	2112.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:117,59:0.34:176
chr10	127585035	rs113524015	C	G	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-9.955;QD=10.64;ReadPosRankSum=2.731;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:143,64:0.31:207
chr10	127585040	rs5006358	G	A	2125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-10.698;QD=9.80;ReadPosRankSum=2.933;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:154,63:0.29:217
chr10	127585090	rs74635147	C	A	3134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.914;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=2.564;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-17.202;QD=8.54;ReadPosRankSum=-1.962;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:270,97:0.26:367
chr10	127585097	rs78188902	T	C	3190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.039;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-17.987;QD=8.67;ReadPosRankSum=-1.320;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:274,94:0.26:368
chr10	127585099	rs79920605	A	G	3117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.857;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-17.987;QD=8.47;ReadPosRankSum=-1.026;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:274,94:0.26:368
chr10	127585112	rs72832617	T	C	2897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.648;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=56.62;MQRankSum=-17.658;QD=8.14;ReadPosRankSum=0.510;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:267,89:0.25:356
chr10	127585120	rs80288044	G	C	2856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.262;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-16.978;QD=8.38;ReadPosRankSum=1.042;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:253,88:0.26:341
chr10	127585150	rs74162870	C	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:202,87:0.30:289
chr10	127585179	rs74162871	G	C	1465.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:154,89:0.37:243
chr10	127585237	rs5013589	C	T	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-1.986;QD=2.45;ReadPosRankSum=-0.636;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:106,21:0.17:127
chr10	127585260	rs4986789	G	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:79,23:0.23:102
chr10	127585288	rs5013590	C	A	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr10	127585302	.	C	T	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.873;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-0.607;QD=1.95;ReadPosRankSum=-1.158;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr10	127585307	rs74579856	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr10	127585360	rs78190003	C	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-3.542;QD=2.63;ReadPosRankSum=-0.302;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:21,4:0.16:25
chr10	127585363	rs74162872	G	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.81;MQRankSum=-4.077;QD=2.86;ReadPosRankSum=0.424;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:20,3:0.13:23
chr10	127668854	rs17153882	G	C	4362.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:108,199:0.65:307
chr10	127693432	rs2138283	C	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr10	127705856	rs41303603	T	C	2365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=0.760;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:68,115:0.63:183
chr10	127727752	rs11594171	G	A	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr10	127730972	rs150225509	CTGTG	C	449.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr10	127730991	rs45535336	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:28,11:0.28:39
chr10	127731012	rs11244780	T	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr10	127731535	rs7911793	TG	CA	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr10	127731803	rs112022474	GC	G	407.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr10	127731846	rs10901522	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:37,11:0.23:48
chr10	127734513	rs1710313	A	C	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:34,22:0.39:56
chr10	127734716	rs11244787	A	G	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:190,90:0.32:280
chr10	127734834	rs11244788	C	T	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.649;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.40;ReadPosRankSum=1.111;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:22,30:0.58:52
chr10	127734834	.	CGG	TGA	1091	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=8;NR=20;PP=1091;QD=40.8738526737;SC=TCAGTTAATACGGATGGAGCA;SbPval=0.43;Source=Platypus;TC=51;TCF=13;TCR=38;TR=28;WE=127734844;WS=127734824;set=Platypus	GT:AD:AF:DP	0/1:23,28:0.55:51
chr10	127734836	rs11244789	G	A	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.224;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.84;ReadPosRankSum=0.771;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:21,30:0.59:51
chr10	127737930	rs2292692	G	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:214,127:0.37:341
chr10	127738280	rs199857907	AT	A	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.92;ReadPosRankSum=-0.104;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr10	127753478	rs1278279	G	A	908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=1.994;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:92,54:0.37:146
chr10	127755544	rs1278280	T	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr10	127786969	rs2290842	A	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,139:0.99:140
chr10	127829012	rs1551678	C	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr10	127829043	rs71490760	G	A	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr10	127829304	rs17154306	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	127843641	rs1466358	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	127843740	rs1466359	G	T	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr10	127843756	rs1466360	G	A	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr10	127843921	rs1466361	T	C	4684.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr10	128019025	rs3740199	C	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr10	128153623	rs7079392	G	A	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=-0.306;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:9,20:0.69:29
chr10	128192985	rs11245007	C	T	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr10	128193368	rs11245008	C	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:202,108:0.35:310
chr10	128193754	rs10901623	A	C	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr10	128202435	rs1436803	T	C	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:58,84:0.59:142
chr10	128209769	rs2099552	T	C	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.693;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.57;ReadPosRankSum=-0.270;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,32:0.76:42
chr10	128209797	rs2099553	C	T	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr10	128209959	rs4962342	G	T	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr10	128335225	rs2842149	T	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:32,14:0.30:46
chr10	128810685	rs1890872	T	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr10	128830336	rs2275534	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr10	128836112	rs56038046	CT	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.711;QD=6.99;ReadPosRankSum=-0.675;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr10	128836214	rs7085407	G	C	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr10	128840842	rs880272	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr10	128841570	rs882052	T	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr10	128850789	rs72279241	CA	C	368.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;QD=18.44;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr10	128850841	rs9418817	T	C	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr10	128851117	rs41300568	G	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr10	128923954	rs1186355	A	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr10	128925761	rs1153016	A	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr10	128926013	rs1060561	A	G	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr10	128952219	rs34225417	C	T	2002.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:165,107:0.39:272
chr10	128952265	rs7068954	A	G	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr10	128974220	rs11594560	G	A	1669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=1.801;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:221,102:0.32:323
chr10	128974621	rs2489386	C	T	4099.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:128,195:0.60:323
chr10	128974713	rs2489385	C	T	4045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.08;ReadPosRankSum=0.272;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:63,105:0.62:168
chr10	128974716	rs2489384	A	G	4060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=0.490;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:62,101:0.62:163
chr10	129046407	rs3740013	T	C	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:73,50:0.41:123
chr10	129137116	rs41282890	G	T	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:21,42:0.67:63
chr10	129179426	rs7099958	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr10	129179739	rs1998864	T	G	391.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr10	129183002	rs878563	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr10	129183015	rs878562	T	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	129200964	rs11017876	G	A	3210.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:261,169:0.39:430
chr10	129202729	rs2296630	G	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:49,37:0.43:86
chr10	129207429	rs2229599	C	T	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:216,112:0.34:328
chr10	129207514	rs2296629	G	A	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:98,176:0.64:274
chr10	129208894	rs6482874	A	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:9,17:0.65:26
chr10	129208954	rs11017943	T	G	1033.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr10	129208972	rs45488799	C	G	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:55,37:0.40:92
chr10	129209084	rs2296628	A	G	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.15;ReadPosRankSum=-0.652;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:75,104:0.58:179
chr10	129213586	rs3736940	C	T	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:62,97:0.61:159
chr10	129213631	rs3736939	A	G	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr10	129216658	rs2229600	T	C	5892.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:136,267:0.66:403
chr10	129237572	rs1926427	G	A	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr10	129242515	rs11371	G	A	7988.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:207,367:0.64:574
chr10	129242555	rs2275053	G	A	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:139,268:0.66:407
chr10	129245684	rs869801	G	A	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:58,121:0.68:179
chr10	129245922	rs72843745	A	G	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:15,35:0.70:50
chr10	129249662	rs2229603	G	A	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr10	129249676	rs2229604	C	T	7897.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr10	129249693	rs2229605	G	A	15665.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.51;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr10	129249701	rs2229606	C	G	16078.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr10	129249914	rs3824814	T	C	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr10	129249925	rs10765104	T	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	129534478	rs147236104	A	AGCGCGGC	350.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	129534679	rs4751501	T	C	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr10	129534739	rs4751502	C	G	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr10	129534864	rs4751503	A	C	12236.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr10	129536642	rs7085541	G	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	129536648	rs7085544	G	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.28;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	129537236	rs201656253	G	C	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:119,90:0.43:209
chr10	129682249	rs10765177	T	C	3146.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr10	129763277	rs4751554	C	T	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:123,162:0.57:285
chr10	129834422	rs10764738	C	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr10	129845547	rs4262642	A	C	945.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	129845903	rs7912703	C	T	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:42,65:0.61:107
chr10	129845924	rs41282856	G	A	1821.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:53,81:0.60:134
chr10	129846010	rs7911904	G	A	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr10	129854369	rs4424589	T	C	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr10	129854507	rs41282862	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:82,42:0.34:124
chr10	129854550	rs11016041	G	A	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,40:0.61:66
chr10	129859061	rs28411949	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr10	129859065	rs11016046	T	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr10	129859992	rs4462251	T	C	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr10	129861497	rs56204987	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr10	129864515	rs10764743	C	T	1943.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:68,87:0.56:155
chr10	129869233	rs10829325	A	G	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr10	129870510	rs41282874	A	G	2568.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:252,147:0.37:399
chr10	129871690	rs2275803	A	G	950.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:81,50:0.38:131
chr10	129871748	rs78196136	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr10	129871766	rs3216057	A	AG	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr10	129883370	rs1129205	A	G	6887.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:141,312:0.69:453
chr10	129899482	rs41282876	T	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=8.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-0.882;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:19,14:0.42:33
chr10	129899578	rs8473	T	C	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:92,46:0.33:138
chr10	129899629	rs16912247	G	A	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:121,52:0.30:173
chr10	129902281	rs1063535	G	A	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:167,96:0.37:263
chr10	129903016	rs7071768	T	C	2879.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:271,162:0.37:433
chr10	129903802	rs11016073	A	G	2912.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:75,129:0.63:204
chr10	129904560	rs2853346	C	T	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:59,117:0.66:176
chr10	129906427	rs41306015	C	A	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:98,57:0.37:155
chr10	129906674	rs41300566	T	C	1482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=-0.393;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:159,83:0.34:242
chr10	129907489	rs2853344	G	A	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:285,145:0.34:430
chr10	129907741	rs2065718	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr10	129913960	rs7095325	A	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,50:0.33:150
chr10	129917560	rs2071498	T	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr10	129917670	rs41282878	A	G	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.624;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr10	131265545	rs16906252	C	T	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:241,142:0.37:383
chr10	131265665	rs16906255	T	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,102:0.98:104
chr10	131334789	rs10734087	T	C	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr10	131639306	rs68001511	T	TCC,TCCCC	561.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.57;QD=43.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/2:0,4,9:0.31,0.69:13
chr10	131641361	rs35210769	T	TG	2987.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr10	131665885	rs12572694	G	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr10	131755652	rs36101167	A	ATT	1133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-1.194;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:84,46:0.35:130
chr10	131755671	rs10829666	G	A	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-2.313;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:79,40:0.34:119
chr10	131755748	rs10829667	G	A	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr10	131760352	rs573370	A	G	1193.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,56:0.64:88
chr10	131904809	rs1177699	C	T	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:122,85:0.41:207
chr10	131934552	rs2274221	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=1.111;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr10	131934596	rs9663190	G	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.11;ReadPosRankSum=1.180;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	131934628	rs2274220	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.11;ReadPosRankSum=1.981;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:2,5:0.71:7
chr10	131943384	rs7095590	T	C	112.41	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr10	131943423	rs7073590	G	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr10	131943719	rs7922450	T	G	30.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr10	131958210	rs1570795	G	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr10	131959150	rs2274217	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr10	131967693	rs17297984	T	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr10	132961555	rs11416735	C	CA	341.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr10	133607895	rs77814414	T	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.28;ReadPosRankSum=0.623;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr10	133607904	rs4897781	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr10	133607937	rs4897782	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.057;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.772;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr10	133607947	rs4897740	T	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.10;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	133608210	rs4897741	A	G	4420.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr10	133608237	rs4897783	G	A	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=-0.167;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:113,64:0.36:177
chr10	133608291	rs4897742	TT	GG	2591.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;JOINED;set=Intersection	GT:AD:AF:DP	0/1:152,74:0.33:226
chr10	133608355	rs72847043	G	A	3863.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:97,177:0.65:274
chr10	133608495	rs4897744	A	T	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,23:0.37:62
chr10	133748121	rs72856070	A	G	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:58,100:0.63:158
chr10	133754202	rs148713648	C	T	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:161,109:0.40:270
chr10	133754334	rs10870270	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr10	133769149	rs201278840	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr10	133769482	rs7894	G	C	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr10	133795202	rs142589527	T	TTGGCCTCCCTC	11773.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr10	133918420	rs11146177	G	A	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:95,133:0.58:228
chr10	133918466	rs10870253	T	C	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.415;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:74,103:0.58:177
chr10	133931090	rs11268573	GGCAGGGGCGGGCGTGGGCGAGGGT	G	684.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.73;MQRankSum=0.930;QD=31.12;ReadPosRankSum=-1.209;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr10	133948439	rs11146206	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	133948456	rs2637643	C	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr10	133948634	rs2814182	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr10	133948689	rs2637644	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr10	133951501	rs57086821	CA	C	3139.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr10	133954011	rs2818387	C	T	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	133954111	rs9733324	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr10	133955427	rs11592585	A	G	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr10	133955569	rs5789117	C	CCG	5235.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr10	133961494	rs2818384	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:122,55:0.31:177
chr10	133961564	rs2818383	T	C	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=1.580;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:85,35:0.29:120
chr10	133961636	rs111344225	C	CTGAACA	180.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	133963042	rs112941338	GC	G	1190.73	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:100,53:0.35:153
chr10	133963096	.	C	CT	413	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=5;HapScore=2;MGOF=12;MMLQ=23;MQ=58.57;NF=0;NR=13;PP=413;QD=33.7692307692;SC=GCCCCACCCCCCTCCGCCCCC;SbPval=1.0;Source=Platypus;TC=37;TCF=0;TCR=37;TR=13;WE=133963104;WS=133963086;set=Platypus	GT:AD:AF:DP	0/1:24,13:0.35:37
chr10	133963466	rs9419380	A	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=0.824;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:108,53:0.33:161
chr10	133967593	rs7906747	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:24,24:0.50:48
chr10	133976706	rs12776458	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:42,28:0.40:70
chr10	133980317	rs117952496	G	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,91:0.71:129
chr10	133981361	.	C	CCTCTCGG	956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.299;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=16.125;MLEAC=1;MLEAF=0.500;MQ=62.28;MQRankSum=7.325;QD=13.87;ReadPosRankSum=0.330;SOR=2.762;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr10	133981368	rs45456394	G	C	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=63.41;MQRankSum=9.154;QD=10.82;ReadPosRankSum=0.158;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:62,35:0.36:97
chr10	133981682	rs4880338	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:127,78:0.38:205
chr10	134000498	rs71905561	TCCCCCCGCCCGC	T	1630.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:46,43:0.48:89
chr10	134010224	rs1552681	C	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr10	134013856	rs871883	G	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:249,117:0.32:366
chr10	134013990	rs2247705	G	A	5146.77	.	AC=1;AF=0.500;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	0/1:571,292:0.34:863
chr10	134014653	rs11592988	T	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.412;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr10	134016115	rs2637629	G	A	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr10	134016396	rs3736258	G	A	880.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:87,48:0.36:135
chr10	134017295	rs12313	A	G	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:96,68:0.41:164
chr10	134021740	rs923659	G	A	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr10	134021810	rs923660	T	C	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr10	134036053	rs2814197	G	A	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=6.272;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=0.418;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:43,16:0.27:59
chr10	134036057	rs2637635	C	T	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.519;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=5.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=1.108;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:48,16:0.25:64
chr10	134036073	rs2814196	G	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:55,23:0.29:78
chr10	134036193	rs2818401	A	G	1408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-2.496;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:275,97:0.26:372
chr10	134036596	rs1994688	G	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr10	134038715	rs902629	A	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr10	134039132	rs2130893	G	C	15181.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr10	134039242	rs2130894	C	T	11186.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr10	134040290	rs2306982	C	A	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr10	134059616	rs3814609	G	A	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr10	134062574	rs4880361	G	A	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr10	134145314	rs11146335	A	G	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr10	134161633	rs2474328	A	G	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr10	134165291	rs2261222	C	G	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr10	134174808	rs117995643	G	T	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr10	134218269	rs11146363	C	T	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:177,106:0.37:283
chr10	134218296	rs10747057	C	G	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:136,96:0.41:232
chr10	134219036	rs11817589	G	A	13942.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.99;ReadPosRankSum=2.558;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:200,358:0.64:558
chr10	134219045	rs11146364	C	T	13594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.08;ReadPosRankSum=3.040;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:196,346:0.64:542
chr10	134598628	rs2804003	A	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr10	134622408	rs2767434	T	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:84,45:0.35:129
chr10	134622507	rs2767431	A	G	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr10	134623959	rs2254419	T	C	2480.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:245,140:0.36:385
chr10	134626453	rs3750586	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:59,39:0.40:98
chr10	134627593	rs11146529	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:39,21:0.35:60
chr10	134627882	rs7070307	G	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr10	134646539	rs4880431	C	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr10	134646988	rs4880433	C	T	1941.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:47,89:0.65:136
chr10	134647453	rs3750583	C	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.41;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	134647453	.	CTGGCGTTC	TTGGCGTTC,TTGGCGTTT	191	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=6;HapScore=3;MGOF=1;MMLQ=28;MQ=60.0;NF=14,9;NR=4,1;PP=117,191;QD=8.4317340304;SC=CTGACCCCCCCTGGCGTTCCC;SbPval=0.58;Source=Platypus;TC=18;TCF=14;TCR=4;TR=18,10;WE=134647469;WS=134647443;set=Platypus	GT:AF:DP	0/1:1.00:18
chr10	134647461	rs41302991	C	T	267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.326;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.17;ReadPosRankSum=1.041;SOR=2.551;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	134647733	rs72855928	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=1.097;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:32,21:0.40:53
chr10	134647771	rs3793690	G	T	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr10	134648048	rs3793688	C	T	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:69,109:0.61:178
chr10	134648279	rs12356978	C	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:39,36:0.48:75
chr10	134650440	rs3750580	T	C	1921.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:41,89:0.68:130
chr10	134660951	rs2892211	A	C	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr10	134664875	rs7913626	A	G	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr10	134672798	rs2001324	G	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,55:0.72:76
chr10	134681093	rs4880454	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chr10	134682701	rs12785166	C	T	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr10	134682855	rs7908950	C	T	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:59,122:0.67:181
chr10	134699301	rs45547444	A	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:58,68:0.54:126
chr10	134706077	rs7076681	C	T	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:47,97:0.67:144
chr10	134713176	rs67123080	G	A	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:167,83:0.33:250
chr10	134722022	rs7075277	A	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr10	134723390	rs10870353	A	G	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr10	134723394	rs11146582	A	G	1896.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.15;SOR=3.516;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	134726068	.	TC	T	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.454;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr10	134726073	.	T	TC	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=-0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-0.000;QD=11.54;ReadPosRankSum=-0.464;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr10	134726083	.	C	CTCTCTCTTCACCT	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.752;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.212;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr10	134726092	rs59156892	T	TTTCAC	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=2.58;ReadPosRankSum=1.913;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr10	134726096	rs57546422	T	TC	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.99;ReadPosRankSum=2.928;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:40,10:0.20:50
chr10	134726108	.	C	CT	2238.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=-0.000;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-0.000;QD=15.88;ReadPosRankSum=-1.224;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:60,81:0.57:141
chr10	134726335	rs12254100	T	C	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	134726369	rs56300950	T	A	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr10	134726621	rs4880467	G	C	3579.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:98,159:0.62:257
chr10	134726841	rs61863089	G	T	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:51,71:0.58:122
chr10	134732035	rs12049725	T	G	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:225,93:0.29:318
chr10	134732095	rs11146033	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.371;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=2.784;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr10	134733109	rs34347971	A	G	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:6,27:0.82:33
chr10	134733131	rs35970466	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chr10	134733482	rs112096435	A	G	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr10	134733497	rs139235253	T	C	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr10	134735672	rs7915371	A	G	2606.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr10	134736019	rs41302993	G	T	1406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.201;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.64;ReadPosRankSum=0.219;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:28,37:0.57:65
chr10	134736026	rs4880286	G	A	1445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.205;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.58;ReadPosRankSum=0.872;SOR=1.155;set=HC	GT:AD:AF:DP	0/1:28,39:0.58:67
chr10	134736044	rs11146040	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:47,25:0.35:72
chr10	134736052	rs4880287	G	T	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr10	134736076	rs4880288	T	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr10	134738232	rs4075501	A	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr10	134738385	rs11146047	C	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-1.560;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:110,45:0.29:155
chr10	134738439	rs146896789	C	CG	564.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,26:0.32:81
chr10	134740365	rs10781544	T	C	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr10	134740393	rs4295969	C	T	1449.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:48,63:0.57:111
chr10	134740618	rs7071677	G	C	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:76,141:0.65:217
chr10	134741099	rs11146048	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr10	134748331	rs12781609	C	T	1693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.466;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.575;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:41,80:0.66:121
chr10	134750604	rs10870211	C	A	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	134750648	rs111544813	A	ATTAAG	385.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr10	134752007	rs60993054	TC	T	752.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:11,31:0.74:42
chr10	134755298	rs4880292	C	G	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr10	134755852	rs56100128	T	C	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=1.309;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr10	134755860	.	T	TCCGGGGCCTCCCCGGGGCGGGGATCGTGGCGGGTC	720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.34;ReadPosRankSum=1.141;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr10	134756013	rs7898115	T	C	1593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=0.769;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:42,74:0.64:116
chr10	134756096	rs11146055	G	C	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.698;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr10	134884516	rs4271312	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:151,61:0.29:212
chr10	134884546	rs4576736	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:143,54:0.27:197
chr10	134884595	rs4271313	G	A	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.511;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:147,56:0.28:203
chr10	134884610	rs4486541	C	G	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=-0.824;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:150,56:0.27:206
chr10	134884755	rs11101751	C	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr10	134885677	rs7069085	A	C	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr10	134885700	rs7094939	T	C	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr10	134886558	rs11101757	G	A	3278.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:264,176:0.40:440
chr10	134886618	rs4838684	G	C	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:108,68:0.39:176
chr10	134895530	rs34883766	C	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr10	134895977	rs11101818	G	A	3338.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:365,192:0.34:557
chr10	134898594	rs4838694	A	G	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr10	134898666	rs4838773	C	T	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr10	134902314	rs10745302	A	G	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr10	134902396	rs10776692	C	G	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.77;ReadPosRankSum=2.581;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr10	134902396	.	CGC	GGT	593	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=23;MQ=60.0;NF=13;NR=11;PP=593;QD=26.9361614526;SC=CTCACGCTTCCGCAACTTTGC;SbPval=0.1;Source=Platypus;TC=67;TCF=47;TCR=20;TR=24;WE=134902406;WS=134902386;set=Platypus	GT:AD:AF:DP	0/1:43,24:0.36:67
chr10	134902398	rs10776693	C	T	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=8.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=2.836;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:49,27:0.36:76
chr10	134902575	rs11101893	G	A	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=-2.161;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:59,38:0.39:97
chr10	134906809	rs117538065	C	T	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:89,41:0.32:130
chr10	134906830	rs141112356	G	C	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:61,31:0.34:92
chr10	134912098	rs4838796	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr10	134912387	rs199882188	T	TGGCACATC	943.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr10	134940862	rs11101942	A	G	2945.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:69,130:0.65:199
chr10	134942166	rs2806452	A	G	5579.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:124,261:0.68:385
chr10	134942340	rs10776696	C	T	6234.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:133,268:0.67:401
chr10	134942832	rs45586231	G	A	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:67,128:0.66:195
chr10	134943085	rs73399158	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:47,58:0.55:105
chr10	134974187	rs56406605	A	T	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr10	134980855	rs41299175	C	T	918.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:64,47:0.42:111
chr10	134981690	rs2998152	T	C	7583.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr10	134981837	rs2998151	T	C	10051.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr10	134981942	rs3008303	C	T	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr10	134997480	rs57510763	C	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr10	134997514	rs67800134	A	G	2579.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:51,73:0.59:124
chr10	134997524	rs138319019	T	TCTTG	2379.73	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:44,60:0.58:104
chr10	134999602	rs3008393	G	C	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr10	135000148	rs3810965	T	C	5694.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:157,258:0.62:415
chr10	135000159	rs3810964	A	G	5450.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:137,244:0.64:381
chr10	135010662	rs6537590	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:77,31:0.29:108
chr10	135012162	rs2998139	T	C	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:73,113:0.61:186
chr10	135012429	rs3008390	TT	AC	8954.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;JOINED;set=Intersection	GT:AD:AF:DP	0/1:159,225:0.59:384
chr10	135012652	rs3008388	T	C	6830.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:175,318:0.65:493
chr10	135015427	rs9418941	C	A	4025.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:78,179:0.70:257
chr10	135015667	rs9419023	C	T	7323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.897;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=-0.189;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:174,333:0.66:507
chr10	135016089	rs3008386	T	C	5986.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:187,277:0.60:464
chr10	135016175	rs3008385	T	G	5351.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:194,255:0.57:449
chr10	135020315	rs3008375	T	C	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr10	135025132	rs41283311	C	T	4151.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:90,186:0.67:276
chr10	135038088	rs11597218	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:68,24:0.26:92
chr10	135043802	rs7092433	C	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr10	135044009	rs11599284	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr10	135051562	rs2998143	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:18,56:0.76:74
chr10	135061112	rs12355840	C	T	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr10	135076523	rs2995300	C	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr10	135076596	rs2230576	T	C	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr10	135076758	rs3008318	T	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr10	135076903	rs3121298	A	G	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	135077121	rs3216041	C	CGTCAGCCCCGTGGGGAGGCCGTGCCACT	1581.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	135077311	rs2995301	C	G	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr10	135081684	rs2995309	T	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr10	135081754	rs11101672	G	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr10	135082346	rs2275720	A	G	15519.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr10	135082810	rs2995310	C	T	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr10	135082874	rs2995311	G	A	8069.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr10	135083164	rs2275719	C	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr10	135083812	rs885023	C	A	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr10	135084232	rs5789159	C	CAGA	5591.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr10	135084322	rs3008321	A	G	6112.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	135084601	rs2995314	T	C	10963.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr10	135085321	rs1131720	C	T	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr10	135085426	rs1131719	A	G	11082.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr10	135085754	rs1131718	G	A	14968.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr10	135086380	rs3008324	C	T	9120.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr10	135087521	rs3008326	G	A	8721.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr10	135088633	.	G	GC	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=9.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-1.212;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:30,7:0.19:37
chr10	135089035	rs2275725	A	G	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr10	135090183	rs2995317	A	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr10	135095764	.	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:18,51:0.74:69
chr10	135096784	rs2995325	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr10	135097224	rs56403249	T	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.32;QD=44.31;SOR=2.247;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr10	135097227	.	CGCA	C	1942.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=45.18;SOR=2.356;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr10	135097232	.	T	TCG	2000.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.43;QD=45.47;SOR=2.409;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr10	135097434	rs2995326	A	G	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr10	135098672	rs3008334	G	A	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr10	135098830	rs3008335	T	C	10213.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr10	135098845	rs2995327	C	T	10393.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:1,383:1.00:384
chr10	135103311	rs141370078	C	CGCCCGCTGCGCCGCGGACGCCAAGTCCCT	2345.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,29:0.97:30
chr10	135105961	.	T	TC	2373	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=4;HapScore=1;MGOF=50;MMLQ=23;MQ=58.27;NF=25;NR=10;PP=2373;QD=68.4285714286;SC=TCCCTCCGTGTCCCCGTGTCC;SbPval=0.71;Source=Platypus;TC=43;TCF=29;TCR=14;TR=35;WE=135105974;WS=135105951;set=Platypus	GT:AD:AF:DP	1/1:8,35:0.81:43
chr10	135105966	.	G	A	1699	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=4;HapScore=1;MGOF=50;MMLQ=24;MQ=58.1;NF=43;NR=14;PP=1699;QD=30.4170388166;SC=CCGTGTCCCCGTGTCCCTCCG;SbPval=0.49;Source=Platypus;TC=59;TCF=45;TCR=14;TR=57;WE=135105974;WS=135105951;set=Platypus	GT:AD:AF:DP	1/1:2,57:0.97:59
chr10	135105983	.	C	T	2493	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=3;HapScore=1;MGOF=53;MMLQ=23;MQ=58.61;NF=71;NR=35;PP=2493;QD=23.8468982316;SC=TCCGTGTCCCCGTGTCCCGGG;SbPval=0.53;Source=Platypus;TC=106;TCF=71;TCR=35;TR=106;WE=135105991;WS=135105973;set=Platypus	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	135141572	rs2298122	G	T	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr10	135160950	rs4838721	C	T	15454.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr10	135165790	rs4369319	A	G	8838.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,339:0.99:341
chr10	135171364	rs1891372	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr10	135178087	rs10745294	A	C	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr10	135179458	rs6537598	G	C	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr10	135180430	rs2230261	A	G	5941.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr10	135184126	rs1049951	G	A	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr10	135186806	rs10466126	A	G	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr10	135192762	rs12250188	C	G	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr10	135194013	rs112773825	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr10	135194890	rs10745295	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	135195148	rs78367010	G	A	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:77,28:0.27:105
chr10	135197336	rs11101730	A	T	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr10	135197376	rs11101731	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr10	135197419	rs4240520	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr10	135202594	rs10776679	T	C	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr10	135204799	rs6537600	C	T	9600.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr10	135204950	rs1046175	C	G	6381.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr10	135205009	rs1046178	C	G	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr10	135207936	rs10160083	T	C	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr10	135209105	rs4838742	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr10	135209850	rs41283339	C	T	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr10	135211892	rs2252852	A	G	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr10	135212950	rs56038934	G	A	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr10	135212997	rs55658692	C	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:125,67:0.35:192
chr10	135213263	rs2814206	T	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr10	135215762	rs58858117	T	C	1617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=18.728;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.700;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:179,104:0.37:283
chr10	135216078	rs41283343	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr10	135232934	rs2243619	C	T	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.59;ReadPosRankSum=-0.898;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr10	135233541	rs2255246	A	G	11480.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr10	135237060	rs2480253	A	G	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr10	135237166	rs2492666	G	A	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=0.694;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr10	135237196	rs4838682	C	T	222.88	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr10	135267445	rs2253522	T	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr10	135267738	rs2253529	T	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr10	135271789	rs2480245	C	T	7121.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr10	135272947	rs2257044	CC	AG	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;JOINED;set=Intersection	GT:AD:AF:DP	0/1:23,24:0.51:47
chr10	135273463	rs731947	C	G	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	135278193	rs2492654	A	G	3332.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=1.016;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr10	135279283	rs2243812	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr10	135279810	rs2243909	T	G	7695.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr10	135280765	rs2246634	C	T	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr10	135340866	rs11445593	T	TC	1036.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr10	135347397	rs915909	T	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr10	135347533	rs943976	A	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr10	135350490	rs147973606	A	AGATGGGTGGAT	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=-0.867;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr10	135351137	rs2070676	G	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr10	135351174	rs2070677	T	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr10	135351362	rs2515641	T	C	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr10	135352153	rs2249694	A	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr10	135352168	rs2249695	T	C	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr10	135352509	rs2480257	T	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-1.395;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:58,26:0.31:84
chr10	135352514	rs2480256	A	G	673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.349;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:56,21:0.27:77
chr10	135367655	rs11101821	A	G	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.405;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.99;ReadPosRankSum=-0.238;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:49,107:0.69:156
chr10	135368163	rs2149616	A	G	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,65:0.63:103
chr10	135368325	rs2149617	A	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr10	135368452	rs3737029	A	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.78;ReadPosRankSum=-0.261;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:22,30:0.58:52
chr10	135368462	rs2183163	T	C	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.29;ReadPosRankSum=1.471;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr10	135368489	rs71228758	A	AGCTGAGACGG	1146.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,29:0.54:54
chr10	135368590	rs3737031	T	C	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr10	135368709	rs3737032	C	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr10	135368835	rs3737034	C	T	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=1.279;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:18,42:0.70:60
chr10	135368967	rs11592461	G	A	1192.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:33,53:0.62:86
chr10	135369054	rs3020514	A	G	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr10	135369258	rs3827688	C	T	2983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.04;ReadPosRankSum=1.706;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:65,121:0.65:186
chr10	135369532	rs3747881	T	C	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:60,74:0.55:134
chr10	135370060	rs2987791	G	C	178.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.35;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr10	135370343	rs8181464	G	A	4276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.962;QD=15.06;ReadPosRankSum=0.491;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:89,195:0.69:284
chr10	135370370	rs8181332	C	T	3802.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:76,167:0.69:243
chr10	135370407	rs11473038	G	GCA	4550.73	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:61,114:0.65:175
chr10	135370470	rs8181425	T	C	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:124,170:0.58:294
chr10	135370633	rs8181356	C	T	5951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.80;ReadPosRankSum=1.198;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:82,158:0.66:240
chr10	135370639	rs8181357	C	A	5582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=0.338;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:68,137:0.67:205
chr10	135370760	rs8181359	C	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr10	135371135	rs11101824	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr10	135371194	rs8181437	T	A	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=0.711;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,14:0.67:21
chr10	135371262	rs8181294	G	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr10	135371466	rs2987792	T	C	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:22,20:0.48:42
chr10	135371467	rs8181456	T	C	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr10	135371566	rs8181309	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr10	135371606	rs8181458	T	C	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,40:0.56:72
chr10	135371835	rs35408926	A	AC	1466.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,52:0.68:77
chr10	135372310	rs10857748	T	C	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr10	135372597	rs10857749	C	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,82:0.69:118
chr10	135372659	rs10857750	A	G	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:42,59:0.58:101
chr10	135372870	rs11101825	C	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:105,103:0.50:208
chr10	135373435	rs3813872	A	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.09;ReadPosRankSum=-2.116;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr10	135373591	rs3813873	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:50,100:0.67:150
chr10	135373694	rs10857752	G	A	1594.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,72:0.66:109
chr10	135373768	rs10857753	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr10	135378802	rs34776401	C	T	2154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=0.520;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:76,104:0.58:180
chr10	135381215	rs3020499	A	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr10	135381276	rs3020500	T	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr10	135381390	rs11101844	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr10	135381425	rs11101845	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr10	135381443	rs11101846	C	T	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr10	135381592	rs3020501	C	G	1347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.694;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:227,90:0.28:317
chr10	135381623	rs3020502	T	C	11761.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr10	135381766	rs3020503	C	T	10436.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr10	135381927	rs2987800	T	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr10	135438951	rs200483318	G	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-9.274;QD=1.89;ReadPosRankSum=0.879;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:223,28:0.11:251
chr10	135438955	rs201563622	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-9.456;QD=1.89;ReadPosRankSum=1.578;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:220,28:0.11:248
chr10	135438959	.	AC	A	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.054;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-10.112;QD=2.21;ReadPosRankSum=2.185;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:211,28:0.12:239
chr10	135438967	rs145018822	C	T	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.124;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-10.575;QD=2.83;ReadPosRankSum=2.139;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:211,32:0.13:243
chr10	135438977	rs79631365	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.514;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.522;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-13.503;QD=0.57;ReadPosRankSum=2.051;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:196,32:0.14:228
chr10	135439338	rs200878503	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.43;MQRankSum=-1.292;QD=11.72;ReadPosRankSum=-0.022;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr11	192997	rs2280540	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr11	193096	rs2280539	T	C	1964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=0.967;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:143,103:0.42:246
chr11	193194	rs2686896	T	C	1625.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=-0.494;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:4,87:0.96:91
chr11	193698	rs2294083	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr11	193722	rs2294082	A	G	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr11	193863	rs2294081	T	C	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.22;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	193863	.	TAT	CAG,CAT	1682	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=3;MMLQ=26;MQ=60.0;NF=51,112;NR=48,113;PP=1265,1682;QD=13.3178573218;SC=TCAAGTCCTGTATAGATGGCC;SbPval=0.46;Source=Platypus;TC=226;TCF=112;TCR=114;TR=99,225;WE=193873;WS=193853;set=Platypus	GT:AF:DP	0/1:0.44:226
chr11	193865	rs2686894	T	G	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.308;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.02;ReadPosRankSum=-1.261;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:137,113:0.45:250
chr11	193925	rs2294080	G	A	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:79,39:0.33:118
chr11	194441	rs61997072	C	T	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-2.225;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:193,66:0.25:259
chr11	194640	rs2979429	G	A	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:41,30:0.42:71
chr11	197337	rs3802984	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:115,126:0.52:241
chr11	197557	rs7103852	A	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	198062	rs11605246	C	G	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:273,160:0.37:433
chr11	199256	rs3741411	G	A	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr11	205757	rs3837432	AACTCTG	A	1464.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:53,41:0.44:94
chr11	205889	rs72878029	T	C	2101.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:111,98:0.47:209
chr11	207359	rs375304678	C	CGGCCACAGCCGCCTCAGACGT	1377.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=16.536;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.323;QD=20.87;ReadPosRankSum=-0.838;SOR=2.432;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr11	207400	rs71487219	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr11	207462	.	A	G	91	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=91;QD=20.9618687579;SC=GCCCCTAGATAGCCCAGCCCC;SbPval=1.0;Source=Platypus;TC=18;TCF=4;TCR=14;TR=6;WE=207470;WS=207452;set=Platypus	GT:AD:AF:DP	0/1:12,6:0.33:18
chr11	209002	rs2177173	A	G	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.98;QD=28.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	212408	rs72878032	C	T	1555.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:71,72:0.50:143
chr11	218640	rs535716	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-1.712;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr11	219089	rs511744	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	223733	rs11246009	T	A	7960.77	.	AC=1;AF=0.500;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	0/1:296,383:0.56:679
chr11	223976	.	A	C	198	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=1;HapScore=2;MGOF=1;MMLQ=28;MQ=54.03;NF=6;NR=2;PP=198;QD=29.0964015684;SC=TGCCCTCCAGACTCCTCCCTG;SbPval=0.74;Source=Platypus;TC=13;TCF=9;TCR=4;TR=8;WE=223984;WS=223974;set=Platypus	GT:AD:AF:DP	1/1:5,8:0.62:13
chr11	235894	rs9795476	T	G	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	236091	rs28365927	G	A	3096.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:138,144:0.51:282
chr11	236337	rs147924046	C	G	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-1.886;QD=14.06;ReadPosRankSum=-0.297;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:23,37:0.62:60
chr11	236343	rs7118852	A	G	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.29;QD=39.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	236370	.	C	CCGGCGCCCCGCCCG	1173.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.33;QD=41.92;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	236871	rs2272563	T	C	106.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	237087	rs1045288	A	G	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	237209	rs56312618	G	A	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:23,22:0.49:45
chr11	243987	rs6598060	G	A	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	244106	rs10902112	A	G	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	244108	rs7107362	A	G	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	244115	rs7128044	G	A	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	244129	rs7116130	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	244141	rs7128029	G	A	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	244167	rs1128320	C	T	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	244171	rs1128321	T	C	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	244197	rs1128322	T	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	244414	rs2272565	C	T	4218.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	244490	rs3830667	ATACCTTTTAG	A	5600.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:4,201:0.98:205
chr11	244552	rs2272566	A	G	1990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.716;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.515;QD=9.81;ReadPosRankSum=-1.003;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:105,98:0.48:203
chr11	247200	rs3830001	G	T	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr11	252318	rs6598055	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr11	279798	rs4758626	G	A	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.419;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:97,87:0.47:184
chr11	280000	rs4758627	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr11	280221	rs6421985	A	C	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,71:0.46:156
chr11	280464	rs77447196	C	G	2237.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:92,104:0.53:196
chr11	280673	rs12807092	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:38,33:0.46:71
chr11	280816	rs7482965	AT	TC	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;JOINED;set=Intersection	GT:AD:AF:DP	0/1:114,101:0.47:215
chr11	284093	rs9734280	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr11	284716	rs760059	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	290816	rs10902120	A	G	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:62,62:0.50:124
chr11	292798	rs11602423	A	G	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr11	293188	rs12801980	T	C	3104.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:180,158:0.47:338
chr11	293785	rs12418165	C	T	3785.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:218,191:0.47:409
chr11	294512	rs149098966	A	ACCCCAGGCTGTCCCTCACCCCCAGACTGCCCTCTCAC	2556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.580;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=6.512;MLEAC=1;MLEAF=0.500;MQ=61.91;MQRankSum=11.277;QD=10.83;ReadPosRankSum=-1.659;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:180,56:0.24:236
chr11	298758	rs2293745	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:70,80:0.53:150
chr11	299219	rs11246058	C	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr11	308059	rs117325804	T	C	812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-1.217;QD=14.01;ReadPosRankSum=-0.791;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:25,33:0.57:58
chr11	308065	rs9704108	T	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=38.42;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	308178	rs1058873	T	C	3378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.729;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.39;ReadPosRankSum=-0.489;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:189,171:0.47:360
chr11	308290	rs1058900	T	C	10460.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:1,311:1.00:312
chr11	308314	rs14408	T	C	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:128,136:0.52:264
chr11	308363	rs1058935	G	C	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	308426	rs1058964	G	C	4245.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	308555	rs4990600	G	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:62,32:0.34:94
chr11	308576	rs909097	G	A	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:65,52:0.44:117
chr11	308716	rs909098	C	T	1780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=4.121;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-2.587;QD=9.09;ReadPosRankSum=-0.680;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:112,84:0.43:196
chr11	309127	rs1059091	A	G	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:199,166:0.45:365
chr11	314207	rs9667990	C	G	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	372095	rs72847391	T	C	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=1.069;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:40,46:0.53:86
chr11	372225	rs79491678	C	T	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.690;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=4.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=1.392;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:95,91:0.49:186
chr11	373317	rs72847393	G	T	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:68,59:0.46:127
chr11	373408	rs376849299	AC	A	2551.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:2,100:0.98:102
chr11	375804	rs61876283	G	A	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:123,146:0.54:269
chr11	376331	rs149045708	T	A	2699.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:171,133:0.44:304
chr11	396701	rs11246147	C	T	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	396915	rs12419281	C	T	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	397706	rs9795298	T	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	397732	rs9795299	T	G	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	400109	rs8858	A	G	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	400719	.	T	G	153.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr11	403001	.	ACCCGACCCGCTCAC	A	946	.	AC=2;AF=1.00;AN=2;BRF=0.55;FR=1.0000;HP=4;HapScore=1;MGOF=46;MMLQ=23;MQ=52.04;NF=4;NR=2;PP=946;QD=162.5;SC=CCCCACTCACACCCGACCCGC;SbPval=0.81;Source=Platypus;TC=9;TCF=5;TCR=4;TR=6;WE=403022;WS=402991;set=Platypus	GT:AD:AF:DP	1/1:3,6:0.67:9
chr11	403030	.	CCCGACCCG	C	1395.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=34.04;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	403040	.	TCACCCC	T	1397.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=32.51;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	403939	rs7479832	A	G	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	403980	rs11748	G	A	5343.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	404317	rs1134578	C	T	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	406043	rs7947	G	A	6153.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	406473	rs3087588	A	C	7704.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	406483	rs3210908	T	C	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	407236	rs7395890	T	C	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	407261	.	GGGCGGGGCCTGCGGGGTGGGCGGGTTTTTGA	G	2046	.	AC=1;AF=0.500;AN=2;BRF=0.53;FR=0.5000;HP=3;HapScore=1;MGOF=91;MMLQ=22;MQ=55.07;NF=4;NR=1;PP=2046;QD=415.0;SC=TCTAAGGGAGGGGCGGGGCCT;SbPval=0.8;Source=Platypus;TC=7;TCF=5;TCR=2;TR=5;WE=407299;WS=407251;set=Platypus	GT:AD:AF:DP	1/0:2,5:0.71:7
chr11	407364	.	C	CATGGG	144.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr11	407366	.	T	TGGGATGGGGC	325.73	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr11	407708	rs6421977	A	C	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	409385	rs6421976	C	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	409720	rs6598024	T	G	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	409766	rs111715314	C	A	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:143,125:0.47:268
chr11	430456	rs11603743	A	G	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr11	433387	rs7395065	A	G	9577.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr11	460303	rs11821341	T	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:42,45:0.52:87
chr11	486826	rs55653405	C	T	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.229;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.210;QD=13.29;ReadPosRankSum=-0.107;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr11	486835	rs55976759	G	A	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.226;QD=13.47;ReadPosRankSum=0.052;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr11	486843	rs56352613	A	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.141;QD=16.06;ReadPosRankSum=-0.628;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:28,20:0.42:48
chr11	486855	rs55961417	T	A	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.110;QD=5.93;ReadPosRankSum=-1.740;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:34,26:0.43:60
chr11	487101	rs61876332	C	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr11	487136	rs61876333	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr11	489537	rs61876336	C	T	4767.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:199,226:0.53:425
chr11	490035	rs61742833	C	T	3175.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:169,160:0.49:329
chr11	494662	rs10540	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:46,37:0.45:83
chr11	494942	rs7983	G	C	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:96,71:0.43:167
chr11	495057	rs67912009	G	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr11	495103	rs11246165	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chr11	498442	rs35811812	G	A	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:94,126:0.57:220
chr11	498976	rs35608427	T	C	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:337,213:0.39:550
chr11	502013	rs7930593	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:46,45:0.49:91
chr11	502129	rs71462090	ACTGGATGTCCAGGCT	A	1851.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:97,52:0.35:149
chr11	502217	rs7944548	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr11	534242	rs12628	A	G	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr11	534403	rs146677294	GCCCAGGCCCAGC	G	793.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,21:0.60:35
chr11	534409	.	GCCCAGC	G	401.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr11	540584	rs11246178	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr11	540604	rs79948463	A	C	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr11	544827	rs76537666	C	T	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.27;ReadPosRankSum=1.549;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:52,69:0.57:121
chr11	549959	rs7942030	C	T	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.763;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	550028	rs11246180	C	G	8010.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.435;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	551235	rs35537971	G	A	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:144,160:0.53:304
chr11	551405	rs7396875	G	A	11247.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr11	551644	rs113026126	C	T	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:248,266:0.52:514
chr11	551753	rs4963198	G	A	6978.77	.	AC=1;AF=0.500;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	0/1:252,333:0.57:585
chr11	552547	rs3740652	T	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr11	552756	rs12361381	T	C	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	552787	rs12361383	T	C	5776.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	552875	rs28575794	A	G	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	554018	rs112033363	G	A	2868.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:133,142:0.52:275
chr11	554047	rs12793222	G	A	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:146,115:0.44:261
chr11	554166	rs10902170	C	G	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:112,111:0.50:223
chr11	554214	rs10902171	G	C	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:176,184:0.51:360
chr11	554299	rs10902172	C	G	9024.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,347:1.00:347
chr11	554968	rs12280283	A	G	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:47,45:0.49:92
chr11	555182	.	G	GGGAGGGGCGGGGAGGAGAGC	194.82	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=64.94;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	555223	rs55731724	AC	A	625.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	556121	rs936467	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	556457	rs28407128	T	C	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	556521	rs28406183	C	G	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	556599	rs117506874	C	T	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=3.181;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:99,121:0.55:220
chr11	556857	rs7938269	G	C	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	557342	rs936466	T	C	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	557540	rs11825368	A	G	2201.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:117,106:0.48:223
chr11	557584	rs11822657	G	A	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:121,126:0.51:247
chr11	558884	rs2061586	C	T	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:116,105:0.48:221
chr11	559016	rs3943356	C	T	2219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.149;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-0.329;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:135,112:0.45:247
chr11	559089	rs35632051	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr11	559298	rs112162682	CTT	C	6919.73	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:183,217:0.54:400
chr11	560546	rs11827168	G	A	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,42:0.55:77
chr11	562437	rs11246189	G	A	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:83,95:0.53:178
chr11	582264	rs71022934	CT	C	75.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.319;QD=6.31;ReadPosRankSum=-2.278;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr11	587425	rs12800061	C	A	486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=3.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.480;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr11	601785	rs2396545	T	C	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr11	606656	rs936470	G	C	1362.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:97,69:0.42:166
chr11	606749	rs936469	G	A	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr11	607175	rs936468	G	A	1223.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:59,60:0.50:119
chr11	609068	rs7928902	G	A	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:69,71:0.51:140
chr11	609353	rs11539530	G	A	6589.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:474,338:0.42:812
chr11	610277	rs11246212	T	C	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	610826	rs187562964	G	T	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:111,81:0.42:192
chr11	611503	rs7941547	G	A	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:30,28:0.48:58
chr11	611531	rs12419618	G	A	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chr11	611802	rs17155933	C	G	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr11	612843	rs10902178	T	G	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,24:0.44:54
chr11	612967	rs11246213	A	G	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:134,110:0.45:244
chr11	613165	rs1051390	G	C	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:194,139:0.42:333
chr11	613192	rs12422022	A	G	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:170,130:0.43:300
chr11	613208	rs1131665	T	C	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:163,133:0.45:296
chr11	613297	rs1061505	T	G	3093.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:152,148:0.49:300
chr11	613666	.	GACA	G	167.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-3.798;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	613670	.	GGATGTGAGTGACGGGGGTGGGCGGGGA	G	164.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-2.669;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	613672	.	A	C	95	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=2;MGOF=60;MMLQ=27;MQ=58.38;NF=5;NR=0;PP=95;QD=25.9542425094;SC=CGGGGACAGGATGTGAGTGAC;SbPval=1.0;Source=Platypus;TC=21;TCF=20;TCR=1;TR=5;WE=613680;WS=613662;set=Platypus	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	613712	.	TGGGTGGGCGGGGACAAGCCGTGAGTGACGG	T	755.73	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=41.99;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	613757	.	A	G	307	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=36;MMLQ=23;MQ=60.0;NF=24;NR=2;PP=307;QD=13.1450466364;SC=GGGCGGGGACAGGCTGCCCCT;SbPval=0.99;Source=Platypus;TC=63;TCF=47;TCR=16;TR=26;WE=613765;WS=613747;set=Platypus	GT:AD:AF:DP	0/1:37,26:0.41:63
chr11	614318	rs1061502	T	C	1105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=2.385;SOR=0.912;set=HC	GT:AD:AF:DP	0/1:125,65:0.34:190
chr11	614864	rs1061501	C	T	6435.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:297,306:0.51:603
chr11	615010	rs12290989	GA	TT	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;JOINED;set=Intersection	GT:AD:AF:DP	0/1:110,102:0.48:212
chr11	616970	rs1610161	A	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	617214	rs35600572	A	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=-0.966;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr11	617221	rs34449380	T	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-0.747;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	617228	rs112006329	G	A	376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=-1.694;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr11	617378	rs61877856	C	T	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:136,88:0.39:224
chr11	617420	rs61877857	A	G	2242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.219;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:154,122:0.44:276
chr11	617519	rs34889521	A	G	2031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.436;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.732;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:182,113:0.38:295
chr11	617967	rs2740379	C	G	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	618013	rs7108757	C	T	3342.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:203,172:0.46:375
chr11	619671	rs1124816	C	T	3194.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr11	621795	rs12801890	G	A	1790.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:119,93:0.44:212
chr11	626220	rs12280580	C	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr11	636496	rs936461	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr11	636689	rs747302	G	C	1824.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.048;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=0.827;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:26,46:0.64:72
chr11	636690	rs936462	G	A	1824.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=0.839;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:26,46:0.64:72
chr11	636701	rs3842250	CG	C	2421.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.36;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	636703	rs2396543	G	T	2430.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	636706	rs375614821	G	C	616.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.248;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=2.520;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr11	636784	.	T	C	127	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=4;HapScore=2;MGOF=45;MMLQ=21;MQ=60.0;NF=4;NR=9;PP=127;QD=12.4439394267;SC=GCGTGGAGGGTGCGCACGAGG;SbPval=0.59;Source=Platypus;TC=26;TCF=8;TCR=18;TR=13;WE=636792;WS=636774;set=Platypus	GT:AD:AF:DP	1/0:13,13:0.50:26
chr11	637361	.	CGCGGGGGCATCT	C	641.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr11	639372	rs146876215	GGC	G	1315.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:75,59:0.44:134
chr11	639374	rs28540443	C	G	1488.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:61,71:0.54:132
chr11	640099	rs34662058	A	G	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.445;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=17.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=1.545;SOR=0.017;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr11	640109	.	A	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.693;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=12.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=1.599;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:44,9:0.17:53
chr11	640349	rs1870723	G	A	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr11	640369	rs7482904	G	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:40,58:0.59:98
chr11	644748	rs79177795	C	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr11	678561	rs10902190	C	T	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	680866	rs7483337	A	G	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	700526	.	CA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=9.165;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.417;QD=2.17;ReadPosRankSum=-1.154;SOR=0.024;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	704753	rs7941896	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	709680	rs11605783	T	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	710558	rs7395822	G	A	7542.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.14;SOR=1.583;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	710567	rs7396652	A	C	7042.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=1.737;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	720197	rs3087546	C	T	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	720958	.	CCCGGCAGGGGAGGGGAGGAG	C	748.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:14,20:0.59:34
chr11	720978	rs5789193	G	GC	345.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr11	721570	rs7635	C	T	14136.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,537:1.00:537
chr11	723429	rs4078520	C	T	3801.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	725877	rs66512023	G	GC	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	726178	rs28498399	G	C	11257.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	763299	rs57332668	TCCCCGCCCTCACCTG	T	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=62.20;MQRankSum=3.614;QD=10.86;ReadPosRankSum=0.386;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr11	771034	rs7930569	A	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:91,69:0.43:160
chr11	772490	rs12224894	G	A	5223.77	.	AC=1;AF=0.500;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	0/1:243,256:0.51:499
chr11	774982	rs7952095	C	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr11	775275	rs7942564	A	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr11	799670	rs28649421	G	C	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr11	800485	rs7121646	TC	AT	8147.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;JOINED;set=Intersection	GT:AD:AF:DP	0/1:192,210:0.52:402
chr11	801631	rs55974235	T	TG	1818.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:57,74:0.56:131
chr11	801776	rs7479183	T	G	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=1.537;QD=9.27;ReadPosRankSum=0.935;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr11	802115	rs7479101	A	G	3331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=0.886;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:225,177:0.44:402
chr11	802125	rs28498421	T	C	13229.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr11	802379	rs10902221	T	C	565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.072;SOR=0.843;set=HC	GT:AD:AF:DP	0/1:35,29:0.45:64
chr11	804212	rs7104785	C	A	2793.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:107,132:0.55:239
chr11	822622	rs7942159	A	G	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr11	823809	rs1135628	C	G	2182.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:149,119:0.44:268
chr11	824684	.	G	A	2521.77	.	AC=1;AF=0.500;AN=2;DP=286;set=Intersection	GT:AD:AF:DP	0/1:160,126:0.44:286
chr11	824789	rs1138693	T	C	4713.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:190,220:0.54:410
chr11	824987	rs66460720	CTGCA	C	3594.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:131,97:0.43:228
chr11	825110	rs1138714	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr11	828784	rs28507876	A	G	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:119,123:0.51:242
chr11	828916	rs7126805	G	A	4704.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:176,220:0.56:396
chr11	829539	rs28558789	A	G	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr11	830487	rs4075290	C	T	11081.77	.	AC=1;AF=0.500;AN=2;DB;DP=1065;set=Intersection	GT:AD:AF:DP	0/1:506,555:0.52:1061
chr11	830670	rs4075289	G	T	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr11	831122	rs7114218	C	T	1357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.44;ReadPosRankSum=-1.058;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:32,62:0.66:94
chr11	836008	rs5030778	T	C	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:75,106:0.59:181
chr11	836023	rs28475448	C	T	6237.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	836227	rs28434354	A	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	836539	rs56063221	TG	T	3835.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr11	836971	rs28620453	G	C	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr11	837121	rs28655651	G	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr11	837582	rs1130663	G	A	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:52,73:0.58:125
chr11	837662	rs67261431	TG	T	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr11	838110	rs5030780	C	T	5128.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:196,249:0.56:445
chr11	840319	rs3059	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,59:0.51:115
chr11	840477	rs4895	A	G	3693.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:149,180:0.55:329
chr11	840578	rs34627090	AC	A	1689.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:56,70:0.56:126
chr11	840604	rs28677123	C	G	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:39,56:0.59:95
chr11	840639	rs28636471	T	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,35:0.59:59
chr11	842543	rs28372895	C	G	3745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=3.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.02;ReadPosRankSum=-0.652;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:155,185:0.54:340
chr11	842627	rs9705236	T	C	1526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=4.726;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.15;ReadPosRankSum=-0.616;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:47,42:0.47:89
chr11	842630	rs9704020	C	T	1453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.330;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.10;ReadPosRankSum=0.080;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:47,38:0.45:85
chr11	842653	rs35249369	C	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	849090	rs28402197	C	G	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	850170	rs28704105	T	G	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	862652	rs28505621	T	C	6507.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	864445	rs61867552	G	C	2930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=1.334;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=-0.289;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:169,147:0.47:316
chr11	864626	rs28377158	A	G	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	865447	rs28423070	G	A	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	865503	rs28581489	G	A	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	866044	rs28457111	A	G	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	866183	rs28439203	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	866498	rs28663055	T	C	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.50;SOR=1.142;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	866498	.	TG	CA,CG	1716	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.16;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=72,117;NR=49,76;PP=1716,797;QD=14.6237014451;SC=GGACAGGGACTGCTCTGGGCT;SbPval=0.53;Source=Platypus;TC=201;TCF=120;TCR=81;TR=121,193;WE=866507;WS=866488;set=Platypus	GT:AF:DP	0/1:0.60:201
chr11	866499	rs34165342	G	A	3120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=0.001;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:81,142:0.64:223
chr11	870446	rs6682	G	A	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	870467	rs1127800	C	T	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,53:0.55:96
chr11	884193	rs61869682	C	T	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr11	900894	rs28454252	T	G	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	900929	rs10794339	C	G	5538.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	903070	rs28380110	G	C	7832.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	970029	rs7396107	C	T	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr11	970373	rs7394436	G	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,38:0.46:82
chr11	970405	rs7394427	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr11	972270	rs7933889	C	T	2155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-1.474;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:105,107:0.50:212
chr11	977036	rs6597960	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr11	985547	rs10794358	C	T	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:169,159:0.48:328
chr11	992691	rs10902263	G	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:52,33:0.39:85
chr11	993694	rs36081583	G	A	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:59,69:0.54:128
chr11	1003523	rs10902264	G	A	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr11	1003642	rs10902265	G	A	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:130,83:0.39:213
chr11	1007831	rs10902267	T	C	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr11	1009346	.	G	T	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-1.854;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:88,30:0.25:118
chr11	1009416	rs7126709	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-1.364;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr11	1009589	rs28612764	A	G	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.84;ReadPosRankSum=0.487;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	1009622	rs28464902	C	T	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.32;ReadPosRankSum=0.730;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr11	1009890	rs11246380	T	C	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:64,37:0.37:101
chr11	1010694	rs1128413	C	T	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr11	1010750	rs1128419	G	A	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr11	1011490	rs7950955	G	A	2944.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:120,138:0.53:258
chr11	1016640	rs111704427	G	A	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=8.037;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-5.138;QD=3.12;ReadPosRankSum=2.685;SOR=1.342;set=HC	GT:AD:AF:DP	0/1:232,39:0.14:271
chr11	1016655	rs77024070	G	A	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=12.800;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-5.882;QD=2.85;ReadPosRankSum=5.441;SOR=1.621;set=HC	GT:AD:AF:DP	0/1:245,38:0.13:283
chr11	1016665	rs77438942	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:224,62:0.22:286
chr11	1016704	rs75826443	C	A	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=6.765;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-7.027;QD=8.57;ReadPosRankSum=1.549;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:209,71:0.25:280
chr11	1016713	rs76406481	T	C	3312.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.683;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-9.144;QD=11.62;ReadPosRankSum=-1.703;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:194,91:0.32:285
chr11	1016714	rs373360588	G	A	417.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.868;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=8.819;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-5.197;QD=1.46;ReadPosRankSum=-1.608;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:254,32:0.11:286
chr11	1016715	rs78295717	T	C	93.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-6.137;QD=0.33;ReadPosRankSum=1.705;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:266,22:0.08:288
chr11	1016719	.	T	G	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300;ClippingRankSum=0.000;DP=305;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-5.648;QD=0.21;ReadPosRankSum=1.726;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:281,24:0.08:305
chr11	1016722	rs144616203	T	G	2898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.673;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=10.773;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-10.030;QD=9.14;ReadPosRankSum=-4.050;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:224,93:0.29:317
chr11	1016724	rs3208810	A	G	5360.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:180,142:0.44:322
chr11	1016732	.	TG	CT	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.977;ClippingRankSum=0.000;DP=361;ExcessHet=3.0103;FS=5.222;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.39;MQRankSum=-4.454;QD=1.39;ReadPosRankSum=-3.043;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:323,37:0.10:360
chr11	1016776	rs33988517	C	T	5950.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:340,219:0.39:559
chr11	1016779	.	G	A	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0.000;DP=665;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-5.138;QD=1.82;ReadPosRankSum=-1.440;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:587,76:0.11:663
chr11	1016789	rs79968742	T	A	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=727;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-3.553;QD=1.87;ReadPosRankSum=-0.775;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:650,75:0.10:725
chr11	1016795	rs111397691	C	G	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=773;ExcessHet=3.0103;FS=1.534;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-2.199;QD=1.55;ReadPosRankSum=-0.870;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:585,122:0.17:707
chr11	1016800	rs199626069	G	A	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.118;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-2.313;QD=1.73;ReadPosRankSum=-0.472;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:746,85:0.10:831
chr11	1016802	rs77342817	T	A	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.425;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-1.521;QD=1.43;ReadPosRankSum=-0.700;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:766,84:0.10:850
chr11	1016810	rs75998609	G	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=918;ExcessHet=3.0103;FS=0.928;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-0.876;QD=1.05;ReadPosRankSum=0.045;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:829,86:0.09:915
chr11	1016819	rs369828826	G	T	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.622;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-1.380;QD=0.35;ReadPosRankSum=0.843;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:874,135:0.13:1009
chr11	1016834	rs34740154	G	A	1220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.163;ClippingRankSum=0.000;DB;DP=1092;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=0.933;QD=1.21;ReadPosRankSum=-8.084;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:841,170:0.17:1011
chr11	1016869	rs35469308	A	T	12222.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:306,364:0.54:670
chr11	1016870	rs76307106	G	A	1683.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DB;DP=797;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=0.735;QD=2.12;ReadPosRankSum=-0.470;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:704,91:0.11:795
chr11	1016871	.	G	T	1673.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.199;ClippingRankSum=0.000;DP=798;ExcessHet=3.0103;FS=0.838;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-0.164;QD=2.10;ReadPosRankSum=-0.684;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:704,92:0.12:796
chr11	1016890	rs113508205	G	A	1429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-2.114;QD=2.22;ReadPosRankSum=-2.671;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:566,78:0.12:644
chr11	1016892	rs78784632	G	A	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.849;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-1.892;QD=1.89;ReadPosRankSum=1.479;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:608,76:0.11:684
chr11	1016894	rs34281988	G	A	6090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554;ClippingRankSum=0.000;DB;DP=676;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-0.171;QD=9.31;ReadPosRankSum=5.747;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:466,188:0.29:654
chr11	1016908	rs79018624	G	T	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-2.973;QD=2.06;ReadPosRankSum=2.082;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:519,65:0.11:584
chr11	1016910	rs113559934	G	A	2795.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.469;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.670;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=0.869;QD=4.91;ReadPosRankSum=0.932;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:457,112:0.20:569
chr11	1016914	.	G	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=1;MGOF=85;MMLQ=20;MQ=54.17;NF=153;NR=183;PP=2962;QD=20;SC=AAGGGTGTGGGTAGCCTGCTG;SbPval=0.66;Source=Platypus;TC=1094;TCF=532;TCR=562;TR=336;WE=1016941;WS=1016900;set=Platypus	GT:AD:AF:DP	0/1:758,336:0.31:1094
chr11	1016916	.	A	G	3032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DP=535;ExcessHet=3.0103;FS=2.295;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-7.875;QD=5.74;ReadPosRankSum=0.702;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:426,102:0.19:528
chr11	1016918	rs34375705	C	T	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=3.314;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=1.270;QD=4.97;ReadPosRankSum=0.648;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:431,99:0.19:530
chr11	1016928	rs34053383	C	G	14398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-7.485;QD=28.74;ReadPosRankSum=-1.096;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:152,349:0.70:501
chr11	1016928	.	CTGGCC	GTGGCC,GTGGCT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=85;MMLQ=24;MQ=53.56;NF=412,138;NR=475,189;PP=2962,2944;QD=20;SC=CCTGCTGCTGCTGGCCGAGGT;SbPval=0.56;Source=Platypus;TC=1041;TCF=493;TCR=548;TR=887,327;WE=1016941;WS=1016900;set=Platypus	GT:AF:DP	0/1:0.85:1041
chr11	1016934	.	G	A	3593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.317;ClippingRankSum=0.000;DP=478;ExcessHet=3.0103;FS=5.037;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-9.797;QD=7.55;ReadPosRankSum=2.326;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:364,112:0.24:476
chr11	1016957	rs200695483	T	G	3257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-11.797;QD=7.04;ReadPosRankSum=3.357;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:359,104:0.22:463
chr11	1016963	rs76273000	G	T	2087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=3.561;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-13.047;QD=4.43;ReadPosRankSum=4.005;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:395,76:0.16:471
chr11	1016968	.	T	C	1892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;ClippingRankSum=0.000;DP=488;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-13.293;QD=3.89;ReadPosRankSum=2.928;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:410,76:0.16:486
chr11	1016972	.	G	A	1874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.650;ClippingRankSum=0.000;DP=496;ExcessHet=3.0103;FS=3.741;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-13.766;QD=3.80;ReadPosRankSum=2.218;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:420,74:0.15:494
chr11	1016976	rs78728217	T	G	2315.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.724;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-14.172;QD=4.66;ReadPosRankSum=1.801;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:413,84:0.17:497
chr11	1016977	.	G	A	2225.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DP=502;ExcessHet=3.0103;FS=3.485;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-14.461;QD=4.45;ReadPosRankSum=1.425;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:416,84:0.17:500
chr11	1016978	.	T	C	2222.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.959;ClippingRankSum=0.000;DP=500;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-14.427;QD=4.46;ReadPosRankSum=0.929;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:414,84:0.17:498
chr11	1016984	rs78839362	G	A	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=4.878;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-15.736;QD=4.30;ReadPosRankSum=-0.465;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:418,77:0.16:495
chr11	1016987	.	G	A	1376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DP=503;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-17.011;QD=2.82;ReadPosRankSum=-0.771;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:427,62:0.13:489
chr11	1017008	.	G	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DP=531;ExcessHet=3.0103;FS=2.244;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-19.417;QD=0.73;ReadPosRankSum=-2.629;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:488,40:0.08:528
chr11	1017012	.	AC	GT	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.610;ClippingRankSum=0.000;DP=529;ExcessHet=3.0103;FS=3.831;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-19.318;QD=0.30;ReadPosRankSum=-3.775;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:487,39:0.07:526
chr11	1017029	rs35621365	T	G	9258.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:197,295:0.60:492
chr11	1017069	rs80333708	G	A	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=7.460;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=1.863;QD=1.16;ReadPosRankSum=0.449;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:342,67:0.16:409
chr11	1017074	rs79277162	A	G	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-15.681;QD=0.53;ReadPosRankSum=-5.388;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:380,29:0.07:409
chr11	1017088	rs74990443	A	C	807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=5.356;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-17.468;QD=2.04;ReadPosRankSum=-4.789;SOR=1.071;set=HC	GT:AD:AF:DP	0/1:345,50:0.13:395
chr11	1017092	.	G	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211;ClippingRankSum=0.000;DP=408;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-15.248;QD=1.51;ReadPosRankSum=-3.123;SOR=1.119;set=HC	GT:AD:AF:DP	0/1:359,46:0.11:405
chr11	1017113	rs74202058	T	C	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=7.983;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-15.554;QD=3.11;ReadPosRankSum=3.385;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:312,60:0.16:372
chr11	1017135	.	G	A	2797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.16;MQRankSum=-5.150;QD=5.11;ReadPosRankSum=2.967;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:424,123:0.22:547
chr11	1017154	rs112965257	T	G	2392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-6.875;QD=4.95;ReadPosRankSum=1.390;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:383,100:0.21:483
chr11	1017158	rs36143620	G	T	2346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-6.690;QD=4.93;ReadPosRankSum=0.085;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:378,98:0.21:476
chr11	1017161	rs374837441	C	T	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.123;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=5.357;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-4.029;QD=2.70;ReadPosRankSum=-0.780;SOR=1.332;set=HC	GT:AD:AF:DP	0/1:400,63:0.14:463
chr11	1017169	rs200932890	G	A	1072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=9.093;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-4.446;QD=2.43;ReadPosRankSum=-1.698;SOR=1.581;set=HC	GT:AD:AF:DP	0/1:388,54:0.12:442
chr11	1017173	rs61869004	G	A	2388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.435;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=2.670;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-2.610;QD=5.49;ReadPosRankSum=1.979;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:299,136:0.31:435
chr11	1017183	rs34844844	G	T	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=1.421;QD=4.44;ReadPosRankSum=1.622;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:299,113:0.27:412
chr11	1017186	rs74579726	A	G	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=6.919;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-3.886;QD=1.17;ReadPosRankSum=-2.900;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:371,36:0.09:407
chr11	1017220	rs56238842	T	C	8514.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:92,219:0.70:311
chr11	1017231	rs35840539	A	G	8142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-8.165;QD=29.94;ReadPosRankSum=0.668;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:80,192:0.71:272
chr11	1017239	rs56386804	C	T	7844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-8.503;QD=29.27;ReadPosRankSum=0.366;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:80,188:0.70:268
chr11	1017240	rs62891761	G	A	7307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=3.547;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-6.400;QD=27.17;ReadPosRankSum=1.274;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:91,178:0.66:269
chr11	1017302	rs35330958	G	C	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:256,122:0.32:378
chr11	1017317	rs33943903	G	T	5689.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:271,149:0.35:420
chr11	1017325	rs55903826	A	C	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.903;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=3.877;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=1.509;QD=3.54;ReadPosRankSum=-1.167;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:340,111:0.25:451
chr11	1017337	rs76686156	TC	CA	7490.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;JOINED;set=Intersection	GT:AD:AF:DP	0/1:288,204:0.41:492
chr11	1017384	rs34095361	G	C	1692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=1.331;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-15.774;QD=3.07;ReadPosRankSum=1.986;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:425,126:0.23:551
chr11	1017421	rs35549382	G	T	8801.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:459,266:0.37:725
chr11	1017440	rs78729877	C	T	10563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.889;ClippingRankSum=0.000;DB;DP=685;ExcessHet=3.0103;FS=0.527;MLEAC=1;MLEAF=0.500;MQ=55.98;MQRankSum=-8.422;QD=15.42;ReadPosRankSum=-1.850;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:409,276:0.40:685
chr11	1017443	rs80266715	C	G	10219.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:318,267:0.46:585
chr11	1017458	.	A	G	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DP=634;ExcessHet=3.0103;FS=5.606;MLEAC=1;MLEAF=0.500;MQ=56.15;MQRankSum=-2.022;QD=2.02;ReadPosRankSum=1.894;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:559,75:0.12:634
chr11	1017461	rs77216712	G	T	3377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;ClippingRankSum=0.000;DB;DP=624;ExcessHet=3.0103;FS=2.339;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-2.916;QD=5.41;ReadPosRankSum=2.730;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:506,118:0.19:624
chr11	1017464	rs112874139	T	C	7648.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:313,206:0.40:519
chr11	1017466	rs201054567	T	C	3948.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=0.634;MLEAC=1;MLEAF=0.500;MQ=56.23;MQRankSum=-11.514;QD=7.23;ReadPosRankSum=2.833;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:422,124:0.23:546
chr11	1017470	rs75533660	G	T	6583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.505;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=1.934;MLEAC=1;MLEAF=0.500;MQ=56.32;MQRankSum=-11.925;QD=10.74;ReadPosRankSum=4.603;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:430,183:0.30:613
chr11	1017471	.	C	T	1606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.655;ClippingRankSum=0.000;DP=617;ExcessHet=3.0103;FS=0.822;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-11.151;QD=2.60;ReadPosRankSum=3.397;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:541,76:0.12:617
chr11	1017474	.	G	A	1018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DP=620;ExcessHet=3.0103;FS=1.930;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-3.443;QD=1.64;ReadPosRankSum=1.817;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:556,64:0.10:620
chr11	1017483	rs79986665	T	G	6150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.926;ClippingRankSum=0.000;DB;DP=629;ExcessHet=3.0103;FS=1.238;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-12.627;QD=9.78;ReadPosRankSum=3.891;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:452,177:0.28:629
chr11	1017485	rs112510411	G	T	295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.37;MQRankSum=-7.451;QD=0.49;ReadPosRankSum=5.113;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:559,46:0.08:605
chr11	1017489	.	G	A	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.457;ClippingRankSum=0.000;DP=633;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-3.248;QD=0.68;ReadPosRankSum=0.527;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:581,52:0.08:633
chr11	1017495	rs67507057	ATGC	A	1722.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.18;MQRankSum=-11.788;QD=2.77;ReadPosRankSum=5.482;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:542,80:0.13:622
chr11	1017498	rs76707565	C	G	5506.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.488;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-4.897;QD=10.43;ReadPosRankSum=0.716;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:361,167:0.32:528
chr11	1017514	rs79037833	A	G	11263.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:317,290:0.48:607
chr11	1017522	rs199592093	T	G	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=4.100;MLEAC=1;MLEAF=0.500;MQ=56.17;MQRankSum=-2.178;QD=0.63;ReadPosRankSum=-0.389;SOR=1.084;set=HC	GT:AD:AF:DP	0/1:522,74:0.12:596
chr11	1017529	rs200644196	G	A	1672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.642;ClippingRankSum=0.000;DB;DP=592;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.30;MQRankSum=-1.102;QD=2.83;ReadPosRankSum=3.491;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:505,87:0.15:592
chr11	1017783	rs36101709	A	G	1911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=6.691;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-4.563;QD=6.52;ReadPosRankSum=0.594;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:196,97:0.33:293
chr11	1017844	rs200752571	T	C	353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.035;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-1.397;QD=0.65;ReadPosRankSum=-0.908;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:501,46:0.08:547
chr11	1017845	rs74610224	C	G	8505.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:305,240:0.44:545
chr11	1017858	rs79583615	A	G	6174.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:310,186:0.38:496
chr11	1017883	rs79644784	C	A	819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.892;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=2.882;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-2.314;QD=1.99;ReadPosRankSum=3.311;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:361,50:0.12:411
chr11	1017891	.	G	T	1487.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DP=374;ExcessHet=3.0103;FS=5.920;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-11.148;QD=4.09;ReadPosRankSum=3.361;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:304,60:0.16:364
chr11	1017892	rs75500881	C	G	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=4.955;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-11.316;QD=4.20;ReadPosRankSum=3.385;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:298,60:0.17:358
chr11	1017899	.	A	T	1560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DP=340;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=56.82;MQRankSum=-10.747;QD=4.60;ReadPosRankSum=3.231;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:280,59:0.17:339
chr11	1017900	rs77920671	G	T	592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.799;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=4.954;MLEAC=1;MLEAF=0.500;MQ=56.76;MQRankSum=-0.202;QD=1.73;ReadPosRankSum=0.842;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:300,42:0.12:342
chr11	1017917	.	A	T	1470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-7.608;QD=5.00;ReadPosRankSum=2.323;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:243,51:0.17:294
chr11	1017921	.	C	T	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=4.798;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=1.646;QD=1.67;ReadPosRankSum=-1.368;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:248,30:0.11:278
chr11	1017935	rs138784536	A	G	2119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.541;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-5.147;QD=8.76;ReadPosRankSum=-1.196;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:178,64:0.26:242
chr11	1017941	rs61869007	G	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=9.968;MLEAC=1;MLEAF=0.500;MQ=55.08;MQRankSum=3.298;QD=0.55;ReadPosRankSum=-1.555;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:216,20:0.08:236
chr11	1017945	.	A	G	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=1.908;QD=0.36;ReadPosRankSum=-3.753;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:209,18:0.08:227
chr11	1017955	rs113926343	C	T	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=6.387;MLEAC=1;MLEAF=0.500;MQ=54.51;MQRankSum=-3.936;QD=3.27;ReadPosRankSum=-2.793;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:177,30:0.14:207
chr11	1017963	rs61869008	G	A	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=18.234;MLEAC=1;MLEAF=0.500;MQ=54.51;MQRankSum=4.992;QD=5.46;ReadPosRankSum=-0.838;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:160,36:0.18:196
chr11	1017968	rs61869009	T	A	1175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=14.961;MLEAC=1;MLEAF=0.500;MQ=54.52;MQRankSum=5.303;QD=6.06;ReadPosRankSum=-0.229;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:154,40:0.21:194
chr11	1017981	rs61869010	T	A	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=15.052;MLEAC=1;MLEAF=0.500;MQ=54.63;MQRankSum=5.870;QD=8.08;ReadPosRankSum=0.278;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:136,50:0.27:186
chr11	1017988	rs112579249	G	T	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=5.843;MLEAC=1;MLEAF=0.500;MQ=54.67;MQRankSum=-1.910;QD=6.01;ReadPosRankSum=-2.828;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:131,54:0.29:185
chr11	1018012	rs10751676	T	G	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.947;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=42.639;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-7.420;QD=7.51;ReadPosRankSum=-2.148;SOR=2.204;set=HC	GT:AD:AF:DP	0/1:134,49:0.27:183
chr11	1018024	.	C	G	2741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=8.558;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=0.597;QD=14.13;ReadPosRankSum=1.586;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:120,74:0.38:194
chr11	1018025	rs10751677	C	A	4451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.104;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=9.462;MLEAC=1;MLEAF=0.500;MQ=55.66;MQRankSum=-7.017;QD=23.07;ReadPosRankSum=-0.766;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:84,109:0.56:193
chr11	1018031	rs10751678	G	A	4325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.380;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=13.488;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-6.622;QD=22.18;ReadPosRankSum=-0.198;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:88,107:0.55:195
chr11	1018042	rs200364398	A	G	3251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=8.008;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=0.120;QD=15.71;ReadPosRankSum=3.796;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:123,84:0.41:207
chr11	1018048	rs12787400	A	G	3345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=4.881;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-0.375;QD=16.16;ReadPosRankSum=3.571;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:119,88:0.43:207
chr11	1018059	rs78336072	C	T	3472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=2.367;MLEAC=1;MLEAF=0.500;MQ=57.91;MQRankSum=-1.198;QD=16.54;ReadPosRankSum=2.606;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:115,95:0.45:210
chr11	1018116	rs10902269	T	G	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:139,104:0.43:243
chr11	1018138	rs71454075	T	C	3577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-5.567;QD=15.16;ReadPosRankSum=-1.559;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:142,94:0.40:236
chr11	1018144	rs12807084	G	C	3218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.504;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-6.165;QD=14.12;ReadPosRankSum=-0.336;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:145,83:0.36:228
chr11	1018169	rs77647814	C	G	2705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.077;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-7.578;QD=11.97;ReadPosRankSum=-1.143;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:150,76:0.34:226
chr11	1018175	rs12418172	A	G	2663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.070;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.451;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-7.699;QD=12.11;ReadPosRankSum=-1.192;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:147,73:0.33:220
chr11	1018182	.	G	T	2522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=1.127;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-7.659;QD=11.36;ReadPosRankSum=-0.172;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:154,68:0.31:222
chr11	1018186	.	G	T	2345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DP=220;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-7.278;QD=10.66;ReadPosRankSum=-0.049;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:154,66:0.30:220
chr11	1018192	.	C	T	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=1.150;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-7.308;QD=9.94;ReadPosRankSum=0.317;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:159,64:0.29:223
chr11	1018196	.	A	T	2205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.129;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-6.962;QD=9.85;ReadPosRankSum=0.405;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:161,63:0.28:224
chr11	1018215	.	G	GCA	2133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.356;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-7.331;QD=9.83;ReadPosRankSum=-1.995;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:156,61:0.28:217
chr11	1018218	.	T	G	1377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.221;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=19.905;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-7.475;QD=6.79;ReadPosRankSum=0.577;SOR=2.016;set=HC	GT:AD:AF:DP	0/1:158,45:0.22:203
chr11	1018220	.	T	A	1464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.336;ClippingRankSum=0.000;DP=201;ExcessHet=3.0103;FS=21.895;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-7.674;QD=7.29;ReadPosRankSum=0.368;SOR=2.088;set=HC	GT:AD:AF:DP	0/1:155,46:0.23:201
chr11	1018222	.	AAT	A	1314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.354;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=23.937;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-11.735;QD=6.54;ReadPosRankSum=2.017;SOR=2.295;set=HC	GT:AD:AF:DP	0/1:158,43:0.21:201
chr11	1018226	.	T	G	936.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.512;ClippingRankSum=0.000;DP=207;ExcessHet=3.0103;FS=21.549;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-11.602;QD=5.18;ReadPosRankSum=2.272;SOR=2.278;set=HC	GT:AD:AF:DP	0/1:147,34:0.19:181
chr11	1018229	rs77630889	C	G	2024.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.446;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=21.277;MLEAC=1;MLEAF=0.500;MQ=57.78;MQRankSum=-11.747;QD=9.69;ReadPosRankSum=2.134;SOR=2.297;set=HC	GT:AD:AF:DP	0/1:149,60:0.29:209
chr11	1018232	rs113063572	G	T	2174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=18.433;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-11.519;QD=10.87;ReadPosRankSum=1.690;SOR=2.090;set=HC	GT:AD:AF:DP	0/1:138,62:0.31:200
chr11	1018237	rs79892432	GT	AG	1121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.670;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=15.708;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=-11.537;QD=6.20;ReadPosRankSum=1.772;SOR=1.860;set=HC	GT:AD:AF:DP	0/1:143,38:0.21:181
chr11	1018245	rs76423553	TT	GC	1306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.174;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=13.274;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-11.340;QD=7.55;ReadPosRankSum=0.309;SOR=1.696;set=HC	GT:AD:AF:DP	0/1:132,41:0.24:173
chr11	1018256	.	T	G	919.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.349;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=21.603;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-10.494;QD=5.51;ReadPosRankSum=-0.584;SOR=2.287;set=HC	GT:AD:AF:DP	0/1:132,35:0.21:167
chr11	1018266	.	G	A	884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=23.753;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-9.365;QD=5.24;ReadPosRankSum=0.195;SOR=2.543;set=HC	GT:AD:AF:DP	0/1:139,30:0.18:169
chr11	1018279	rs201852389	C	T	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.353;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=22.542;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-8.451;QD=4.49;ReadPosRankSum=0.705;SOR=2.576;set=HC	GT:AD:AF:DP	0/1:145,27:0.16:172
chr11	1018290	.	G	A	578.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=21.867;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-8.184;QD=3.51;ReadPosRankSum=0.180;SOR=2.741;set=HC	GT:AD:AF:DP	0/1:141,24:0.15:165
chr11	1018291	.	G	C	690.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.866;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=22.379;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-8.238;QD=4.09;ReadPosRankSum=0.622;SOR=2.547;set=HC	GT:AD:AF:DP	0/1:142,27:0.16:169
chr11	1018292	.	C	T	578.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.157;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=21.653;MLEAC=1;MLEAF=0.500;MQ=57.44;MQRankSum=-8.139;QD=3.45;ReadPosRankSum=0.077;SOR=2.668;set=HC	GT:AD:AF:DP	0/1:144,24:0.14:168
chr11	1018295	rs73403297	T	C	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=5.104;MLEAC=1;MLEAF=0.500;MQ=57.18;MQRankSum=-4.160;QD=0.72;ReadPosRankSum=-1.465;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:149,17:0.10:166
chr11	1018299	rs200809011	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=23.492;MLEAC=1;MLEAF=0.500;MQ=57.03;MQRankSum=-8.362;QD=3.76;ReadPosRankSum=-0.260;SOR=2.734;set=HC	GT:AD:AF:DP	0/1:144,26:0.15:170
chr11	1018313	rs75499910	G	T	655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=15.034;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-7.572;QD=3.95;ReadPosRankSum=-0.013;SOR=2.053;set=HC	GT:AD:AF:DP	0/1:140,26:0.16:166
chr11	1018329	rs75968137	T	A	480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.105;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=23.545;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-8.091;QD=2.97;ReadPosRankSum=0.473;SOR=3.014;set=HC	GT:AD:AF:DP	0/1:139,23:0.14:162
chr11	1018340	rs77556339	TG	CA	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.433;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=21.122;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-7.935;QD=2.87;ReadPosRankSum=-0.020;SOR=2.909;set=HC	GT:AD:AF:DP	0/1:135,21:0.13:156
chr11	1018385	rs7396380	T	A	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=56.13;MQRankSum=-9.711;QD=7.35;ReadPosRankSum=1.199;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr11	1018456	rs79920422	G	A	727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-7.383;QD=5.73;ReadPosRankSum=2.807;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr11	1018459	rs199760270	G	T	472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.777;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-7.344;QD=3.58;ReadPosRankSum=1.030;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:111,21:0.16:132
chr11	1018473	rs112923701	A	T	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-7.345;QD=2.60;ReadPosRankSum=2.108;SOR=1.180;set=HC	GT:AD:AF:DP	0/1:127,19:0.13:146
chr11	1018483	rs78265558	C	G	1107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-8.994;QD=7.24;ReadPosRankSum=3.771;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:114,39:0.25:153
chr11	1018496	rs67341709	G	T	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=3.340;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-9.378;QD=6.13;ReadPosRankSum=2.274;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:125,39:0.24:164
chr11	1018523	rs73403301	A	G	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=10.578;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-9.823;QD=2.24;ReadPosRankSum=-4.620;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr11	1019375	rs9704308	C	T	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:98,76:0.44:174
chr11	1021368	.	CTTT	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.450;SOR=1.195;set=HC	GT:AD:AF:DP	0/1:38,8:0.17:46
chr11	1027811	rs7481521	C	T	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:94,102:0.52:196
chr11	1030741	.	CAG	C	1550.73	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr11	1033240	rs61869016	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr11	1075092	rs41369349	G	A	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr11	1075747	rs2856111	T	C	7041.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:294,334:0.53:628
chr11	1075850	rs11825969	G	A	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:208,213:0.51:421
chr11	1075920	rs11825977	G	A	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:110,93:0.46:203
chr11	1077493	rs34367348	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1078393	rs7104590	T	C	9375.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	1078752	rs41500945	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	1078763	rs11245922	TT	GG	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.000;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr11	1078787	rs61870062	A	G	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.634;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,3:0.19:16
chr11	1079534	.	ACGC	A	481	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=3;HapScore=2;MGOF=26;MMLQ=23;MQ=56.58;NF=11;NR=2;PP=481;QD=39.5384615385;SC=GACACTCACCACGCCGGGCAC;SbPval=0.79;Source=Platypus;TC=28;TCF=22;TCR=6;TR=13;WE=1079544;WS=1079524;set=Platypus	GT:AD:AF:DP	0/1:15,13:0.46:28
chr11	1079809	rs10902081	C	T	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:90,81:0.47:171
chr11	1079879	rs7127117	T	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr11	1080223	rs41345548	G	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:75,65:0.46:140
chr11	1080391	rs41521547	G	A	3958.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:121,182:0.60:303
chr11	1080846	rs11245928	A	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:34,44:0.56:78
chr11	1080954	rs11245929	G	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:125,113:0.47:238
chr11	1081001	rs111397309	C	CA	5526.73	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:160,165:0.51:325
chr11	1081074	rs41411848	T	C	3310.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:195,175:0.47:370
chr11	1081112	rs41345745	G	C	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:149,132:0.47:281
chr11	1081141	rs41375149	C	T	3116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=5.057;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.001;QD=15.13;ReadPosRankSum=-0.313;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:117,89:0.43:206
chr11	1081151	rs41464048	T	C	2843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=-0.340;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:105,77:0.42:182
chr11	1081351	rs10902082	A	G	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:39,59:0.60:98
chr11	1081381	rs10902083	A	G	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:74,87:0.54:161
chr11	1081392	rs10902084	T	C	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:92,99:0.52:191
chr11	1081577	rs12416873	G	A	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:185,221:0.54:406
chr11	1081757	rs57737240	G	C	2622.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:114,122:0.52:236
chr11	1082419	rs11820653	G	A	6320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=2.957;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.39;ReadPosRankSum=1.009;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:158,168:0.52:326
chr11	1082424	rs41401046	G	A	6255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=4.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.18;ReadPosRankSum=0.674;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:150,160:0.52:310
chr11	1082520	rs11245930	A	G	5612.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:130,146:0.53:276
chr11	1082533	rs41343848	G	A	5944.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:132,164:0.55:296
chr11	1082582	rs7952257	G	A	3534.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:234,176:0.43:410
chr11	1082982	rs11245932	C	T	3285.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:127,144:0.53:271
chr11	1083293	rs7394853	T	C	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:107,106:0.50:213
chr11	1083364	rs7396030	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:37,24:0.39:61
chr11	1083495	rs11245933	G	T	647.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=-0.925;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr11	1083700	rs11245934	C	T	1561.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:98,84:0.46:182
chr11	1084144	rs55668297	C	T	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr11	1084362	rs11245936	G	A	2216.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:143,115:0.45:258
chr11	1084821	rs10794288	T	C	4870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.056;QD=10.52;ReadPosRankSum=0.519;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:218,245:0.53:463
chr11	1086163	rs7926689	C	A	3889.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:141,187:0.57:328
chr11	1090501	rs35179278	C	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr11	1093452	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=4;HapScore=1;MGOF=22;MMLQ=26;MQ=48.53;NF=322;NR=704;PP=2962;QD=20;SC=CCCCAACCCCGACACCCACCG;SbPval=0.96;Source=Platypus;TC=2944;TCF=1297;TCR=1647;TR=1026;WE=1093460;WS=1093442;set=Platypus	GT:AD:AF:DP	1/0:1918,1026:0.35:2944
chr11	1093512	rs34493663	C	A	7362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.903;ClippingRankSum=0.000;DB;DP=1480;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.067;QD=5.01;ReadPosRankSum=-4.251;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:1008,463:0.31:1471
chr11	1093710	rs7944723	C	G	34272.77	.	AC=2;AF=1.00;AN=2;DB;DP=1308;set=Intersection	GT:AD:AF:DP	1/1:0,1303:1.00:1303
chr11	1093945	rs7934606	T	C	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:96,140:0.59:236
chr11	1094629	rs11245950	T	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:39,29:0.43:68
chr11	1094690	rs10794291	C	T	2251.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:107,103:0.49:210
chr11	1094753	rs10794292	A	C	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:186,210:0.53:396
chr11	1095082	rs6597999	A	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:53,64:0.55:117
chr11	1096494	rs6421972	T	C	6240.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:262,297:0.53:559
chr11	1098637	rs12418069	A	G	2029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=3.052;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:141,111:0.44:252
chr11	1101649	rs7480563	T	C	1521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=0.375;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:103,79:0.43:182
chr11	1103137	rs11245955	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:122,126:0.51:248
chr11	1103477	rs11245956	C	T	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:70,62:0.47:132
chr11	1103786	rs9988872	A	G	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	1155717	rs76203912	G	C	2566.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:120,131:0.52:251
chr11	1158073	rs28691231	T	C	10790.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr11	1158834	rs28433367	C	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	1159133	rs35917282	G	A	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	1159150	rs28542750	A	T	2852.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	1161315	rs28403537	T	C	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	1213204	.	CTTTCTG	GTTTCCA,GTTTCTG	2690	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.44;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=99;MMLQ=24;MQ=59.21;NF=304,1029;NR=348,1085;PP=2246,2690;QD=3.54212864243;SC=CACAAGCCATCTTTCTGTATC;SbPval=0.66;Source=Platypus;TC=3477;TCF=1701;TCR=1776;TR=652,2114;WE=1213218;WS=1213194;set=Platypus	GT:AF:DP	0/1:0.19:3477
chr11	1213245	rs67624660	T	A	95093.77	.	AC=1;AF=0.500;AN=2;DB;DP=3518;set=Intersection	GT:AD:AF:DP	0/1:1030,2449:0.70:3479
chr11	1213256	rs370028072	C	T	8994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.297;ClippingRankSum=0.000;DB;DP=3376;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.554;QD=2.70;ReadPosRankSum=3.952;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:2656,681:0.20:3337
chr11	1213257	rs76779582	T	C	98553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.523;ClippingRankSum=0.000;DB;DP=3327;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.136;QD=29.96;ReadPosRankSum=-1.654;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:990,2300:0.70:3290
chr11	1213259	rs75991767	T	G	97162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.315;ClippingRankSum=0.000;DB;DP=3292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.132;QD=29.86;ReadPosRankSum=-1.238;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:974,2280:0.70:3254
chr11	1213264	rs72846341	G	A	95168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=3239;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-1.124;QD=29.73;ReadPosRankSum=-0.152;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:949,2252:0.70:3201
chr11	1213272	rs78252457	A	C	77945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.193;ClippingRankSum=0.000;DB;DP=3239;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.206;QD=24.36;ReadPosRankSum=5.390;SOR=0.550;set=HC	GT:AD:AF:DP	0/1:1253,1947:0.61:3200
chr11	1213275	rs71251383	G	A	16884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=3225;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.617;QD=5.30;ReadPosRankSum=2.374;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:2572,614:0.19:3186
chr11	1213281	rs75618268	C	T	77352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.618;ClippingRankSum=0.000;DB;DP=3163;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.219;QD=24.75;ReadPosRankSum=3.469;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:1236,1889:0.60:3125
chr11	1213284	rs200981907	C	T	16544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.554;ClippingRankSum=0.000;DB;DP=3121;ExcessHet=3.0103;FS=0.683;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=-0.623;QD=5.36;ReadPosRankSum=1.516;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:2493,591:0.19:3084
chr11	1213287	rs112774721	G	A	18327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.797;ClippingRankSum=0.000;DB;DP=3121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-1.017;QD=5.94;ReadPosRankSum=-1.335;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:2443,641:0.21:3084
chr11	1213293	rs77207494	C	T	45137.77	.	AC=1;AF=0.500;AN=2;DB;DP=3087;set=Intersection	GT:AD:AF:DP	0/1:1858,1192:0.39:3050
chr11	1213296	rs78466479	A	G	11844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.368;ClippingRankSum=0.000;DB;DP=3071;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.601;QD=3.90;ReadPosRankSum=1.673;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:2572,463:0.15:3035
chr11	1213302	rs371630624	T	C	13556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.923;ClippingRankSum=0.000;DB;DP=3080;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.443;QD=4.45;ReadPosRankSum=2.606;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:2547,498:0.16:3045
chr11	1213311	rs80058880	C	T	16085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=3078;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=5.28;ReadPosRankSum=2.395;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:2489,557:0.18:3046
chr11	1213314	rs73395695	C	T	66375.77	.	AC=1;AF=0.500;AN=2;DB;DP=3077;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:1310,1737:0.57:3047
chr11	1213317	rs76191775	G	A	16657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136;ClippingRankSum=0.000;DB;DP=3076;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=5.47;ReadPosRankSum=2.478;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:2455,590:0.19:3045
chr11	1213405	rs67262263	G	A	32059.77	.	AC=1;AF=0.500;AN=2;DB;DP=2301;set=Intersection	GT:AD:AF:DP	0/1:1235,1057:0.46:2292
chr11	1213416	rs78511643	G	A	11052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DB;DP=2184;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=1.215;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:1530,645:0.30:2175
chr11	1213424	rs61867531	A	G	65818.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.914;ClippingRankSum=0.000;DB;DP=2052;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.23;ReadPosRankSum=2.335;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:429,1613:0.79:2042
chr11	1213428	rs61867532	T	C	42849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=1983;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.72;ReadPosRankSum=2.836;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:760,1213:0.61:1973
chr11	1213440	rs61867533	T	C	57790.77	.	AC=1;AF=0.500;AN=2;DB;DP=1854;set=Intersection	GT:AD:AF:DP	0/1:408,1434:0.78:1842
chr11	1213460	rs200307483	G	A	5798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=1686;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=2.462;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:1429,242:0.14:1671
chr11	1213461	rs61867534	T	G	17421.77	.	AC=1;AF=0.500;AN=2;DB;DP=1672;set=Intersection	GT:AD:AF:DP	0/1:636,777:0.55:1413
chr11	1213533	rs73395699	C	T	11058.77	.	AC=1;AF=0.500;AN=2;DB;DP=1157;set=Intersection	GT:AD:AF:DP	0/1:555,540:0.49:1095
chr11	1215271	rs71025716	GA	G	2326.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	1215698	rs28452143	A	G	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:153,142:0.48:295
chr11	1216316	rs58550179	G	GC	16614.73	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	1216333	rs60138698	TA	T	17435.73	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	1216440	rs28415193	G	C	25357.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:31,647:0.95:678
chr11	1216491	rs1132434	G	C	24565.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr11	1217228	rs28592983	T	C	2784.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:156,144:0.48:300
chr11	1218143	rs28515631	A	C	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	1219626	rs56013970	C	T	3542.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:158,175:0.53:333
chr11	1220967	rs1132436	C	T	8005.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	1221592	rs28728088	T	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	1221817	rs1132440	G	C	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	1246941	rs2672785	A	G	2874.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.01;ReadPosRankSum=-2.717;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,132:0.60:221
chr11	1247458	rs2075853	C	T	5578.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:309,276:0.47:585
chr11	1248491	rs908223	T	G	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	1248731	rs2075854	A	G	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr11	1250068	rs144854459	T	TG	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	1250384	rs2471912	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:96,95:0.50:191
chr11	1250488	rs2075859	C	T	3699.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:181,184:0.50:365
chr11	1250603	rs2075860	G	C	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:96,89:0.48:185
chr11	1250696	rs10832955	C	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr11	1252047	rs2672807	T	C	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:24,29:0.55:53
chr11	1252708	rs2735709	G	C	5078.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:312,268:0.46:580
chr11	1253401	rs12421917	C	G	4227.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:173,203:0.54:376
chr11	1253856	rs1318321	T	C	3936.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:185,194:0.51:379
chr11	1253942	rs908229	T	C	4711.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:124,221:0.64:345
chr11	1253969	rs72846370	A	G	2871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=3.018;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-3.157;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:179,83:0.32:262
chr11	1253976	rs76956995	A	G	2798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.900;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=6.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-4.655;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:168,79:0.32:247
chr11	1253980	rs202127660	A	G	2600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=9.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.66;ReadPosRankSum=-5.426;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:154,69:0.31:223
chr11	1254038	rs11026355	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr11	1254599	rs2672806	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr11	1254940	rs2735719	G	A	461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.355;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.388;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-0.504;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr11	1255089	rs147340559	CCCCTG	C	1423.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr11	1255773	rs7116614	C	T	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:78,55:0.41:133
chr11	1257867	rs2672803	T	C	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr11	1258175	rs80092233	C	T	5765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.335;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=25.629;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.25;ReadPosRankSum=-6.862;SOR=2.055;set=HC	GT:AD:AF:DP	0/1:523,176:0.25:699
chr11	1258192	rs76589014	AT	TC	6387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.329;ClippingRankSum=0.000;DB;DP=728;ExcessHet=3.0103;FS=18.545;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=8.87;ReadPosRankSum=-0.399;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:536,184:0.26:720
chr11	1258197	rs78674028	A	G	6743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=16.323;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.678;SOR=1.704;set=HC	GT:AD:AF:DP	0/1:533,197:0.27:730
chr11	1258199	rs80200632	C	T	7127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.358;ClippingRankSum=0.000;DB;DP=736;ExcessHet=3.0103;FS=14.379;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=9.78;ReadPosRankSum=-0.349;SOR=1.666;set=HC	GT:AD:AF:DP	0/1:531,198:0.27:729
chr11	1258217	rs74648489	T	G	7689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.316;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=12.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.384;SOR=1.507;set=HC	GT:AD:AF:DP	0/1:494,218:0.31:712
chr11	1258226	rs55700357	C	T	7717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=0.000;DB;DP=686;ExcessHet=3.0103;FS=9.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.30;ReadPosRankSum=2.036;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:471,212:0.31:683
chr11	1258240	rs77287508	CA	TG	7564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=11.509;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=1.335;SOR=1.397;set=HC	GT:AD:AF:DP	0/1:407,208:0.34:615
chr11	1258283	rs78669250	G	A	7088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.171;ClippingRankSum=0.000;DB;DP=504;ExcessHet=3.0103;FS=1.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=2.828;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:313,190:0.38:503
chr11	1258286	rs77996005	C	T	7202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.811;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=1.753;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:295,192:0.39:487
chr11	1258295	rs79118814	A	G	7029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=1.437;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:283,190:0.40:473
chr11	1261640	rs2735733	C	T	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:181,156:0.46:337
chr11	1267325	rs55813014	T	C	10368.77	.	AC=1;AF=0.500;AN=2;DB;DP=1202;set=Intersection	GT:AD:AF:DP	0/1:701,498:0.42:1199
chr11	1267562	rs60268710	C	T	4674.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:229,214:0.48:443
chr11	1271321	rs2943517	C	G	6043.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:295,273:0.48:568
chr11	1272226	rs2943512	A	C	7245.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:354,349:0.50:703
chr11	1272858	rs4963059	C	T	6185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.396;ClippingRankSum=0.000;DB;DP=673;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.115;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:350,321:0.48:671
chr11	1279486	rs2249550	A	G	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=7.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=0.356;SOR=1.176;set=HC	GT:AD:AF:DP	0/1:103,104:0.50:207
chr11	1281134	rs2857476	T	C	5473.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:185,261:0.59:446
chr11	1284227	rs12417955	A	G	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr11	1304706	rs3838783	TG	T	232.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	1309956	rs3750920	C	T	2838.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:217,149:0.41:366
chr11	1411501	rs112066837	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	1432691	rs61868960	T	C	3553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.78;ReadPosRankSum=-0.139;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:270,187:0.41:457
chr11	1432949	rs112544636	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	1457472	rs115584864	G	C	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:5,21:0.81:26
chr11	1462162	rs61002819	AG	A	2829.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	1462217	rs9651643	C	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	1464903	rs56896587	CG	C	2636.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	1466720	rs3817589	G	A	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:98,81:0.45:179
chr11	1471154	rs11028332	C	T	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:67,85:0.56:152
chr11	1471751	rs2272424	C	T	2423.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:193,129:0.40:322
chr11	1472050	rs61869028	A	G	1313.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:52,58:0.53:110
chr11	1472475	rs3838784	TG	T	3413.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	1475628	rs66529968	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	1477768	rs67861777	C	T	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	1481610	rs28555282	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	1481690	.	CCT	C	1347.73	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.87;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	1481930	rs4963048	A	G	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.54;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	1481962	rs34875491	GC	G	596.37	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,28:0.90:31
chr11	1491096	rs9440	G	A	11060.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:1,416:1.00:417
chr11	1492445	rs4881724	A	G	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	1501670	rs10742185	G	C	6692.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	1502097	rs10767696	A	G	3741.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	1502401	rs4881735	A	C	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	1507512	rs1881502	T	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	1507731	rs1881503	A	G	9647.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr11	1509238	rs2334554	T	C	14224.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr11	1509421	rs2334553	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	1576005	rs59483236	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	1576137	rs11604635	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	1576235	rs6578504	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	1576283	rs11603496	G	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	1576863	rs12576976	A	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	1578090	rs7129499	G	A	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	1585277	rs3740620	C	T	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	1605904	.	T	TCCCCCACAAGAACCGCAGCCCCCCTTGCAGCCTCCACAGGAGCCACAGCCCCCCTTGGAG	370.74	.	AC=1;AF=0.500;AN=2;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;QD=52.96;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:0,7:1.00:7
chr11	1606120	.	ACCACAGCCACCCTTGGATCCCCCACAAGAG	A	3477.73	.	AC=2;AF=1.00;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	1619172	.	ACCCCCACAGGAGCCACAGCCCCCCTTGGAG	A	4406.73	.	AC=2;AF=1.00;AN=2;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	1628844	rs1989592	A	G	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr11	1628965	rs57186801	G	A	23380.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:1,589:1.00:590
chr11	1628992	rs60210378	G	A	22717.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:1,546:1.00:547
chr11	1630342	rs10837527	T	A	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1651169	rs71454095	T	C	10656.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	1651198	.	GAGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	G	2973	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=16;MMLQ=23;MQ=62.91;NF=18;NR=117;PP=2973;QD=20;SC=TCCGGCTGTGGAGGCTGTGGG;SbPval=0.55;Source=Platypus;TC=139;TCF=19;TCR=120;TR=135;WE=1651235;WS=1651188;set=Platypus	GT:AD:AF:DP	0/1:4,135:0.97:139
chr11	1651199	.	A	AGGCTGTGGCTCC	1815.79	.	AC=2;AF=1.00;AN=2;DP=278;set=Intersection	GT:AD:AF:DP	1/1:3,46:0.94:49
chr11	1651228	rs71454096	C	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.64;QD=28.40;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:0,7:1.00:7
chr11	1651423	.	G	C	240	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=5;HapScore=1;MGOF=13;MMLQ=28;MQ=47.25;NF=7;NR=0;PP=240;QD=39.2530303639;SC=TCCAAGGGGGGCTGTGGCTCC;SbPval=1.0;Source=Platypus;TC=31;TCF=26;TCR=5;TR=7;WE=1651431;WS=1651401;set=Platypus	GT:AD:AF:DP	0/1:24,7:0.23:31
chr11	1651540	rs61867581	C	G	11326.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.18;QD=45.67;SOR=1.738;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	1651550	rs61867582	C	T	12042.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.53;QD=42.26;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	1651613	.	TTACTGCTGCCAGTCCAGCTGCTGTAAGCCC	T	13460.73	.	AC=2;AF=1.00;AN=2;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	1651830	rs4752770	G	T	8501.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	1651917	rs4752769	C	T	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	1718833	rs73404785	T	G	5754.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:280,288:0.51:568
chr11	1756681	rs7943617	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	1770224	rs111693235	C	G	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	1771797	rs3740621	T	C	8135.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	1774666	rs12214	T	C	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:108,79:0.42:187
chr11	1774934	rs112379600	A	G	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:202,193:0.49:395
chr11	1776024	rs55725229	TC	T	1364.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;MQ=60.49;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	1778496	rs56363318	C	T	1165.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:58,53:0.48:111
chr11	1780205	rs11555039	A	G	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:147,147:0.50:294
chr11	1780867	rs2230067	G	A	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:65,74:0.53:139
chr11	1782594	rs17571	G	A	3670.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:135,176:0.57:311
chr11	1782761	rs72850961	T	C	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:50,56:0.53:106
chr11	1785401	rs144932926	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr11	1853107	rs616594	C	T	6596.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	1853121	rs867839	C	T	6055.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	1855854	rs2063551	G	C	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	1857042	rs907605	G	T	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr11	1857173	rs564271	T	C	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	1857243	rs907608	G	A	2150.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:71,99:0.58:170
chr11	1857270	rs907609	C	T	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	1857514	rs140659236	C	T	3635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=411;ExcessHet=3.0103;FS=7.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-2.220;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:212,195:0.48:407
chr11	1857747	rs3741232	T	C	10765.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	1857751	rs3741231	C	G	10757.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	1857930	rs3741229	G	A	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.78;SOR=1.156;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	1857930	.	GCCCCAA	ACCCCAA,ACCCCAG	823	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=2;MMLQ=27;MQ=60.0;NF=57,22;NR=32,14;PP=823,538;QD=9.63787879267;SC=GGGGGTCTGAGCCCCAACTCG;SbPval=0.54;Source=Platypus;TC=89;TCF=57;TCR=32;TR=89,36;WE=1857944;WS=1857920;set=Platypus	GT:AF:DP	0/1:1.00:89
chr11	1857936	rs141440654	A	G	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.718;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=1.050;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:66,42:0.39:108
chr11	1858352	rs148305306	A	G	4819.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:272,228:0.46:500
chr11	1858572	rs2292474	C	T	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:174,181:0.51:355
chr11	1861760	rs907610	T	C	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	1861912	rs2271441	G	A	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:54,36:0.40:90
chr11	1874221	rs907612	C	T	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr11	1874266	rs2089909	C	T	518.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:25,26:0.51:51
chr11	1874292	rs907613	G	A	715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=-0.726;SOR=0.411;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr11	1874404	rs2089910	C	T	1333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.35;ReadPosRankSum=0.583;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:44,64:0.59:108
chr11	1880811	rs571122	G	A	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	1887806	rs7938342	T	A	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:117,127:0.52:244
chr11	1890810	rs501124	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	1890990	rs592373	G	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.370;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.313;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.735;QD=14.09;ReadPosRankSum=1.714;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:25,50:0.67:75
chr11	1891035	rs61278563	G	GA	1147.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	1891319	rs61868778	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr11	1891587	rs61868779	C	T	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:71,64:0.47:135
chr11	1901467	rs2271439	A	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	1902635	rs536462	G	T	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	1905146	rs201258993	G	GT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.576;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.107;QD=0.41;ReadPosRankSum=2.057;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:166,34:0.17:200
chr11	1905653	rs56024612	G	C	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:61,74:0.55:135
chr11	1910635	rs869444	C	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:76,95:0.56:171
chr11	1910707	rs613638	T	C	3576.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	1911115	rs11041692	T	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:68,83:0.55:151
chr11	1944050	rs370860604	CCT	C	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=512;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-1.046;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:418,71:0.15:489
chr11	1944202	rs965912	A	G	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:153,141:0.48:294
chr11	1944636	rs2734500	A	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:46,40:0.47:86
chr11	1950302	rs629990	A	G	9723.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,382:0.99:384
chr11	1950906	rs2292473	T	G	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	1950925	rs2292471	T	C	3731.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	1956212	rs513735	T	C	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	1961701	rs375322681	TCTCA	T	294.14	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr11	1961869	rs11041941	T	C	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	1976988	rs177720	A	G	2827.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	1993975	rs190063	C	A	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	2016619	rs3741219	A	G	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	2016659	rs2839704	T	C	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.740;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=-0.892;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:87,90:0.51:177
chr11	2016662	rs2839703	T	C	3484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.25;ReadPosRankSum=-0.188;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:89,92:0.51:181
chr11	2016924	rs10840159	A	G	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	2017017	rs2839702	A	C	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.550;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	2017110	rs2839701	C	G	5115.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	2017439	rs3024270	C	G	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	2018168	rs2067051	C	T	16466.77	.	AC=2;AF=1.00;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	1/1:0,623:1.00:623
chr11	2018336	rs2075745	A	T	12624.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	2018449	rs2075744	A	G	19640.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.704;ClippingRankSum=0.000;DB;DP=784;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.95;ReadPosRankSum=1.902;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:2,755:1.00:757
chr11	2018853	rs2839698	G	A	26452.77	.	AC=2;AF=1.00;AN=2;DB;DP=999;set=Intersection	GT:AD:AF:DP	1/1:1,995:1.00:996
chr11	2156536	rs3213225	G	A	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	2161858	rs3741212	A	G	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	2167543	rs1003483	T	G	8782.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	2167618	rs1003484	A	G	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	2169014	rs10770125	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2181060	rs3842753	T	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	2182004	rs5506	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	2182224	rs689	A	T	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	2186335	rs2070762	A	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	2187071	rs6578990	T	C	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	2187398	rs4072823	T	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	2187439	rs4072824	C	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	2188566	rs7925924	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	2189185	rs4074905	G	A	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	2194175	rs10743149	T	C	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr11	2194390	rs10840491	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr11	2194420	rs10770142	G	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr11	2321042	.	ATGCACACACATCCACGTCTGCACACGCATCCACGCC	A	90.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	2321650	rs2651823	A	G	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=1.244;SOR=1.714;set=HC	GT:AD:AF:DP	0/1:13,19:0.59:32
chr11	2322829	rs11022157	C	A	2067.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:75,91:0.55:166
chr11	2323022	rs12276847	C	T	4387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=0.883;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:313,232:0.43:545
chr11	2323029	rs756924	T	C	18423.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.99;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	2323220	rs734094	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr11	2323528	rs2074021	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	2324041	rs2074022	A	G	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	2324692	rs1501467	C	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:63,67:0.52:130
chr11	2324852	rs2651824	A	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	2325581	rs2074023	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	2329894	.	GC	G	98	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=8;HapScore=2;MGOF=66;MMLQ=23;MQ=60.0;NF=1;NR=1;PP=98;QD=57.5;SC=ACAGTGACCGGCCCCCCCCAG;SbPval=0.56;Source=Platypus;TC=6;TCF=4;TCR=2;TR=2;WE=2329902;WS=2329884;set=Platypus	GT:AD:AF:DP	1/1:4,2:0.33:6
chr11	2329995	rs11554947	C	T	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	2330077	rs2234297	C	G	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	2330400	rs2521273	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	2330479	rs2521274	G	A	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	2330563	rs2521275	C	T	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	2334740	rs739546	G	A	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	2337012	rs11022252	G	C	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	2356603	rs2651795	T	C	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	2356769	rs2651794	T	C	10737.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	2357108	rs2173888	C	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	2400338	rs2651796	C	G	3618.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	2407084	rs71029143	G	GT	11356.73	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	2424684	rs2234283	A	C	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	2426984	rs2301696	G	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	2427291	rs800342	A	C	13569.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr11	2427364	rs61873460	T	C	8102.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	2428341	rs11022676	G	A	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,23:0.59:39
chr11	2432820	rs2651822	A	G	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	2432964	rs2074234	T	C	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:116,97:0.46:213
chr11	2433568	rs148615642	A	AGGATCAGGGTTCAGCGTGCCATGG	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.081;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.197;QD=14.93;ReadPosRankSum=-0.209;SOR=2.080;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr11	2434628	rs11601529	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr11	2434684	rs11601544	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,55:0.57:97
chr11	2434840	rs11605894	C	T	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:153,181:0.54:334
chr11	2435910	rs76270811	G	GC	595.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr11	2435931	rs4929980	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr11	2435946	rs4929981	A	G	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.98;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	2435946	.	AAGGGCCAGCC	GAGGGCCAGCC,GAGGGCCAGCT	376	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=11;MMLQ=23;MQ=60.0;NF=35,18;NR=11,3;PP=237,376;QD=5.90806983798;SC=GTCACTCACCAAGGGCCAGCC;SbPval=0.54;Source=Platypus;TC=46;TCF=35;TCR=11;TR=46,21;WE=2435964;WS=2435936;set=Platypus	GT:AF:DP	0/1:1.00:46
chr11	2435956	rs4929982	C	T	997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.483;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=9.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=1.066;SOR=1.926;set=HC	GT:AD:AF:DP	0/1:33,29:0.47:62
chr11	2436733	rs11605072	G	A	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:97,99:0.51:196
chr11	2439542	rs3986599	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	2439621	rs2074236	A	T	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr11	2439651	rs886276	G	T	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr11	2439672	rs147746598	T	TC	1378.73	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:42,40:0.49:82
chr11	2439767	rs886277	T	C	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:114,118:0.51:232
chr11	2439876	rs886278	G	A	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:104,80:0.43:184
chr11	2440041	rs4244810	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	2441646	rs11607968	G	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr11	2441686	rs35998237	T	TG	1315.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	2444094	rs2301699	C	G	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:91,84:0.48:175
chr11	2542605	rs10400376	TA	GG	1930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-0.502;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:69,52:0.43:121
chr11	2549329	rs145292450	TGG	T	1567.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr11	2593416	rs12786951	A	G	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chr11	2593977	rs4930127	A	G	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr11	2683357	rs760419	A	G	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	2789856	rs163161	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	2797320	rs163150	A	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	2798448	rs163148	A	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	2799369	rs55771042	C	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr11	2869188	rs11601907	C	T	3983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=2.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.711;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:187,196:0.51:383
chr11	2905204	rs34289096	G	GC	1814.73	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:79,76:0.49:155
chr11	2920666	rs365605	C	T	3086.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:154,151:0.50:305
chr11	2924591	rs1048046	G	A	2071.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:67,91:0.58:158
chr11	2924610	rs1048047	G	A	6336.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	2924850	rs34816459	T	TC	2872.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	2929552	rs429886	A	G	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	2929659	rs424663	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr11	2930395	rs10832891	G	C	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:57,62:0.52:119
chr11	2930594	rs67769451	CG	C	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	2930656	rs2286660	T	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	2930773	rs61871178	G	T	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.56;ReadPosRankSum=0.041;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr11	2930987	rs61871179	G	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.120;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr11	2939161	rs67709661	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,33:0.52:63
chr11	2939392	rs445679	G	A	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	2940492	rs450244	T	C	4937.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	2943671	rs1129782	G	C	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:102,105:0.51:207
chr11	2943912	rs2411773	GT	AG	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.16;QD=46.52;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	2943916	rs2411771	A	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=45.56;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	2943921	rs1618222	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.24;QD=42.06;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	2946522	rs3764896	G	A	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	2950558	rs13390	A	G	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:60,62:0.51:122
chr11	2950683	.	TGCCCCTCCCCGCCCC	T	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.85;ReadPosRankSum=-2.233;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	2973159	rs2071117	G	A	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:29,43:0.60:72
chr11	2975987	rs2073581	A	G	3505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-2.394;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:198,185:0.48:383
chr11	2979798	rs7940694	G	T	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:129,145:0.53:274
chr11	2986044	rs11603844	G	C	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr11	2993353	rs2411767	T	C	157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.125;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=-0.580;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr11	2997485	rs2277298	G	A	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr11	3000330	rs11826983	G	T	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr11	3000395	rs10488674	C	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=-0.912;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:28,23:0.45:51
chr11	3026692	rs4758458	T	G	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:35,34:0.49:69
chr11	3026712	rs7931504	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr11	3028270	rs7950766	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr11	3036933	rs2071104	G	T	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chr11	3048140	rs494427	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:28,32:0.53:60
chr11	3050210	rs434114	A	G	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.207;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.040;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-1.583;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr11	3061780	rs399565	C	T	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,37:0.49:75
chr11	3061949	rs2285390	C	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	3061992	rs369461	T	C	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr11	3076257	rs7945933	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	3076285	rs406598	G	A	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chr11	3078536	rs4758463	C	G	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,67:0.64:104
chr11	3108506	rs8813	G	A	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	3109279	rs11553374	G	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;MQ=60.72;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	3109284	rs3217567	G	GC	571.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	3109403	rs2289999	A	G	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.21;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	3109408	rs2289998	C	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	3109426	rs10160757	T	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	3110956	rs895564	C	T	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr11	3110976	rs895563	A	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	3111866	rs2277301	C	T	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=-0.763;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:41,64:0.61:105
chr11	3113596	rs113239327	C	T	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr11	3115354	rs9795009	T	C	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	3121248	rs71035481	C	CA	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.18;ReadPosRankSum=-1.906;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr11	3128774	rs3741353	T	C	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:56,52:0.48:108
chr11	3128915	rs3741351	T	C	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr11	3129027	rs3741350	G	A	2387.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:91,113:0.55:204
chr11	3129200	rs113370820	GCCCCAC	G	940.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr11	3141530	rs34752531	C	G	3667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=3.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.93;ReadPosRankSum=-0.116;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:91,93:0.51:184
chr11	3141537	rs55862536	T	C	3897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.511;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.96;ReadPosRankSum=0.591;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:109,108:0.50:217
chr11	3143030	rs6578322	T	C	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	3242833	rs7929163	G	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	3242907	rs11602794	G	A	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	3242933	rs10833491	C	T	4855.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	3243346	rs11026004	C	T	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	3243367	rs12280457	G	T	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	3243427	rs12275900	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	3249552	rs4391795	C	T	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:53,57:0.52:110
chr11	3249984	rs12295710	C	T	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	3361087	rs2073805	T	C	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	3381369	rs62619253	G	C	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,81:0.57:143
chr11	3381843	rs2157763	A	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr11	3382069	rs6578335	C	G	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	3382215	rs6578336	T	C	82.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	3383962	rs10734319	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	3388118	rs11026762	A	G	162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.63;ReadPosRankSum=-2.198;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	3390006	rs7943767	T	C	1281.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:58,63:0.52:121
chr11	3390173	rs1989786	A	T	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:15,26:0.63:41
chr11	3390547	rs7925972	G	C	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	3390911	rs4758575	G	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	3392351	rs2269735	T	C	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.14;ReadPosRankSum=-0.718;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:86,67:0.44:153
chr11	3392357	rs2269734	T	G	2114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.78;ReadPosRankSum=-0.949;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:78,56:0.42:134
chr11	3392972	rs2269732	G	A	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:153,178:0.54:331
chr11	3394894	rs10833820	G	A	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:119,124:0.51:243
chr11	3394960	rs10833821	A	G	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:38,44:0.54:82
chr11	3398760	rs7932709	G	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	3398795	rs7932797	G	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	3400237	rs2301567	G	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.795;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:49,58:0.54:107
chr11	3400334	rs7931660	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	3400422	rs6578342	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	3659993	rs2271586	G	T	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:86,101:0.54:187
chr11	3660295	rs1996208	C	T	425.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr11	3661140	rs4910876	T	C	8271.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	3661585	rs3062849	A	ATGG	15435.73	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	3662892	rs72844325	G	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr11	3663011	rs932097	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:65,42:0.39:107
chr11	3663170	rs7111519	G	C	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	3681051	rs61998205	C	G	5605.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:253,256:0.50:509
chr11	3681115	rs35136756	A	G	6981.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:358,350:0.49:708
chr11	3681519	rs2280134	T	C	6944.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	3704704	rs7950171	T	C	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:15,19:0.56:34
chr11	3704770	rs12293627	C	T	38.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr11	3704775	rs35532049	CT	C	304.14	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr11	3723781	rs35404087	G	C	2447.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:106,117:0.52:223
chr11	3733899	rs35803045	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr11	3735239	rs61879797	C	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:77,110:0.59:187
chr11	3742062	.	CA	C	282.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.88;ReadPosRankSum=1.434;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr11	3752727	rs61751339	T	G	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chr11	3797065	rs61896889	T	C	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:22,10:0.31:32
chr11	3799985	rs188044	G	A	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chr11	3800096	rs61896892	C	T	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:83,56:0.40:139
chr11	3829419	rs2278845	G	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	3838899	rs61899363	A	T	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:30,39:0.57:69
chr11	3838910	rs7946577	G	C	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr11	3838953	rs10835147	T	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	3839292	rs112928434	T	TAA	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.36;ReadPosRankSum=1.907;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr11	3844254	.	CTTTTTTTTTTTTTT	C	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=15.337;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.945;QD=19.27;ReadPosRankSum=2.949;SOR=2.236;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr11	4103524	rs2304891	A	G	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	4104060	rs2898950	A	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	4104087	rs10767828	T	C	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	4104319	rs2289571	A	C	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:61,45:0.42:106
chr11	4104355	rs894455	T	C	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	4104745	rs2289570	C	G	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	4116335	rs12801088	A	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	4123345	rs1348310	C	G	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	4123427	rs232054	C	G	2021.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	4128845	rs725518	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	4130543	rs11030980	C	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	4133317	rs56336381	C	A	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	4141132	rs183484	C	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	4153767	rs10835662	A	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	4159457	rs9937	A	G	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.395;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	4159466	rs1042858	G	A	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.20;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	4159764	rs1042919	A	T	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	4159770	rs866902	AT	A	134.75	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	4185463	rs979941	T	C	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr11	4185595	rs979942	T	G	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:81,83:0.51:164
chr11	4185766	rs7948314	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr11	4388905	rs11031960	C	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:91,100:0.52:191
chr11	4389404	rs11310407	AG	A	1335.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:66,49:0.43:115
chr11	4389587	rs7929171	G	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr11	4389639	rs4910623	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr11	4409386	rs2554933	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	4409511	rs12805578	A	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	4411002	rs926100	C	A	1259.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:56,56:0.50:112
chr11	4510285	rs96489	A	G	1910.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:118,96:0.45:214
chr11	4510587	rs331510	C	T	5006.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:243,236:0.49:479
chr11	4562831	rs2657172	A	G	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	4562947	rs2641414	G	T	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:30,36:0.55:66
chr11	4562969	rs144617165	A	AATTTT	590.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr11	4562970	rs67163911	A	ATTT	762.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr11	4566377	rs2657168	C	T	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,22:0.42:53
chr11	4566711	rs2709182	C	T	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	4567335	rs2657167	C	G	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:65,69:0.51:134
chr11	4592708	rs71280817	C	CAG	2127.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr11	4592923	.	CA	C	54.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.49;ReadPosRankSum=2.638;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	4593334	rs34520159	T	A	59.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chr11	4593550	rs117631969	C	T	1256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.856;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.47;ReadPosRankSum=-1.363;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:54,66:0.55:120
chr11	4594739	rs919519	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	4608542	rs1847632	C	T	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:180,180:0.50:360
chr11	4615234	rs4910511	A	G	5847.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:336,299:0.47:635
chr11	4615390	rs2010722	C	T	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=29.47;SOR=1.185;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	4615508	rs2010719	C	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:218,140:0.39:358
chr11	4615905	rs146674516	T	C	2913.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:183,141:0.44:324
chr11	4621485	rs2231978	C	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	4622159	rs2231972	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	4623106	rs999818	T	C	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	4623788	rs931811	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	4624394	rs7943486	T	C	1114.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:47,53:0.53:100
chr11	4624432	rs17314159	C	A	1707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.629;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=-0.080;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:87,86:0.50:173
chr11	4661280	rs148606808	C	T	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:158,135:0.46:293
chr11	4673788	rs17224476	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:41,31:0.43:72
chr11	4674575	rs3817098	G	A	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:127,104:0.45:231
chr11	4703165	rs1123991	C	A	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:156,107:0.41:263
chr11	4730985	rs4619142	C	T	11457.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr11	4731180	rs4432013	G	A	8515.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	4731468	rs4436535	G	A	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	4731583	rs4471413	C	T	7135.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	4869649	rs12361955	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:104,66:0.39:170
chr11	4869906	rs7117260	A	C	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,36:0.55:65
chr11	4870139	rs11602455	G	A	1004.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr11	4870261	rs11602499	G	C	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:89,72:0.45:161
chr11	4870298	rs11601065	T	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:107,68:0.39:175
chr11	4880892	rs11034368	T	C	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:87,88:0.50:175
chr11	4903500	rs78644275	G	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:127,102:0.45:229
chr11	4928866	rs7941509	C	T	6756.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	4945233	rs35264256	C	T	7166.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	4945236	rs35666095	T	C	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	4964627	rs2595993	C	A	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr11	4964649	rs2595992	G	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.462;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr11	4964753	rs2605301	A	G	1792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.02;ReadPosRankSum=0.598;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:87,92:0.51:179
chr11	4964784	rs2605302	A	T	1993.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:108,95:0.47:203
chr11	4965239	rs2570581	G	A,T	1722.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;set=Intersection	GT:AF:DP	1/2:0.47,0.53:70
chr11	4965301	rs2605303	G	T	2434.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	4967468	rs28698374	G	A	4250.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:149,196:0.57:345
chr11	4967532	rs2595988	G	C	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:218,155:0.42:373
chr11	4968198	rs3845246	C	A	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=9.794;MLEAC=1;MLEAF=0.500;MQ=49.00;MQRankSum=-3.856;QD=8.58;ReadPosRankSum=0.424;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:91,68:0.43:159
chr11	4976241	rs2570571	C	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.85;QD=30.09;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	4976788	rs35318834	C	A	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:13,116:0.90:129
chr11	4976811	rs28482315	C	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=55.377;MLEAC=1;MLEAF=0.500;MQ=46.62;MQRankSum=-5.816;QD=2.04;ReadPosRankSum=0.009;SOR=5.891;set=HC	GT:AD:AF:DP	0/1:93,18:0.16:111
chr11	4977026	rs10837027	C	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:33,35:0.51:68
chr11	5012117	.	C	G	150.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	5012592	rs61880629	C	T	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5013421	rs5789346	G	GT	1442.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:4,74:0.95:78
chr11	5020117	rs10837108	C	G	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr11	5020189	rs11035064	C	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:61,46:0.43:107
chr11	5020416	rs2445290	A	G	5735.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	5020509	rs11035066	C	T	2231.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:131,108:0.45:239
chr11	5020799	rs10768448	C	T	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:190,144:0.43:334
chr11	5020832	rs10768450	C	T	2555.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:156,126:0.45:282
chr11	5067984	rs2500016	A	G	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	5068137	rs2500017	G	A	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	5068177	rs2500018	A	T	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	5068297	rs58664826	G	A	3047.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:143,151:0.51:294
chr11	5068431	rs17350764	G	A	2672.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:112,119:0.52:231
chr11	5068661	rs2500019	A	G	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.30;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	5068661	.	AC	GC,GT	1145	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=23;MQ=60.0;NF=60,29;NR=99,52;PP=747,1145;QD=4.91680007891;SC=AGATTCGAGAACGAGTGCTCT;SbPval=0.51;Source=Platypus;TC=159;TCF=60;TCR=99;TR=159,81;WE=5068670;WS=5068651;set=Platypus	GT:AF:DP	0/1:1.00:159
chr11	5068662	rs57026471	C	T	1966.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.871;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.660;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:84,91:0.52:175
chr11	5079946	rs2445332	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	5080068	rs2500052	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	5080234	rs2445333	T	C	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:125,103:0.45:228
chr11	5080337	rs61746343	T	C	1551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.76;ReadPosRankSum=-0.326;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:116,84:0.42:200
chr11	5153261	rs2472530	A	G	2928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=0.958;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:138,147:0.52:285
chr11	5172786	rs10768611	A	G	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	5199222	rs7924390	A	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	5199340	rs113029548	A	AATGCCC	5766.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	5199645	rs6578560	T	C	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	5199660	rs6578561	T	C	6476.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	5199675	rs6578562	C	T	5392.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	5199708	rs6578563	T	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	5199817	rs5789371	GC	G	476.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	5221645	rs11512276	C	A	3372.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:180,170:0.49:350
chr11	5221825	rs11036212	G	A	1218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.378;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=0.080;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:61,57:0.48:118
chr11	5247141	rs1609812	G	A	146.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	5247726	rs7946748	G	A	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr11	5247733	rs7480526	A	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=0.912;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:36,40:0.53:76
chr11	5247791	rs10768683	C	G	1576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.71;ReadPosRankSum=0.207;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:100,81:0.45:181
chr11	5248243	rs713040	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,49:0.41:120
chr11	5263577	rs10128555	C	G	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	5269582	rs371855998	AG	A	6742.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.20;MQRankSum=-1.023;QD=26.86;ReadPosRankSum=0.826;SOR=0.894;set=HC	GT:AD:AF:DP	1/1:2,249:0.99:251
chr11	5269584	rs1065686	T	A	11493.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.08;QD=45.25;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	5269586	rs371890964	A	AG	11484.73	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.87;QD=44.51;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	5269799	rs28440105	A	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.27;QD=34.57;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	5269806	rs28379094	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.876;MLEAC=1;MLEAF=0.500;MQ=46.18;MQRankSum=-0.137;QD=8.07;ReadPosRankSum=-0.964;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr11	5270539	rs111624259	C	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.60;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	5270686	rs1061234	G	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.73;QD=25.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	5274452	rs34879481	G	GT	1961.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:82,60:0.42:142
chr11	5274717	rs2070972	A	C	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.42;MQRankSum=0.637;QD=17.92;ReadPosRankSum=0.405;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chr11	5289896	rs3061750	A	AAAAC	3353.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.43;QD=43.00;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	5322520	rs12283334	G	A	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:174,197:0.53:371
chr11	5322737	rs10837771	A	G	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:179,137:0.43:316
chr11	5323071	rs7118113	C	T	3972.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	5344552	rs7934105	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	5344561	rs7933257	G	A	758.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.974;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.94;ReadPosRankSum=1.092;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	5344772	rs10742622	T	C	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	5344847	rs10768793	A	G	4449.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	5344902	rs7937237	C	G	3891.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	5345128	rs10837814	G	A	7853.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr11	5345170	rs7952293	A	G	6565.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	5345486	rs4910750	G	A	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	5364276	rs4910551	G	A	2295.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:100,109:0.52:209
chr11	5364450	rs11036912	A	G	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:126,153:0.55:279
chr11	5372690	rs4373970	A	G	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr11	5372718	rs4494330	G	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr11	5372751	rs4910755	A	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr11	5372856	rs4910756	A	G	2798.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:148,133:0.47:281
chr11	5373006	rs7483122	T	C	1804.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:114,86:0.43:200
chr11	5373104	rs5006889	A	G	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=3.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.76;ReadPosRankSum=-2.251;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:110,76:0.41:186
chr11	5373111	rs7479477	G	A	2705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.79;ReadPosRankSum=-1.108;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:110,73:0.40:183
chr11	5373114	rs5006888	G	A	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	5373129	rs5006887	C	T	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:115,67:0.37:182
chr11	5373170	rs5006886	C	G	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:120,88:0.42:208
chr11	5373242	rs5006885	T	G	4307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.44;ReadPosRankSum=-1.362;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:146,116:0.44:262
chr11	5373251	rs5006884	C	T	4181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-1.170;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:144,112:0.44:256
chr11	5373311	rs5006883	T	C	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:129,100:0.44:229
chr11	5373334	rs5006882	A	G	1963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=0.359;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:129,98:0.43:227
chr11	5373562	rs5024042	C	A	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:164,158:0.49:322
chr11	5373646	rs5024041	T	C	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	5373724	rs5024040	A	G	2875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=-0.977;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:93,77:0.45:170
chr11	5373728	rs5024039	C	A	2837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.331;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.279;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.09;ReadPosRankSum=-1.214;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:91,75:0.45:166
chr11	5373738	rs5024038	A	G	2169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.608;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.19;ReadPosRankSum=-0.545;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:77,57:0.43:134
chr11	5373807	rs5024037	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr11	5373841	rs185403359	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr11	5410934	rs1498467	T	G	7150.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	5411031	rs1498468	C	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5411239	rs1498469	T	C	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	5411395	rs9783355	C	A	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	5411579	rs10768906	GT	AC	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	5423775	rs7481498	G	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	5423868	rs2647583	T	A	5994.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	5423931	rs2736526	C	T	10406.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr11	5424125	rs1909261	G	A	5489.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	5424170	rs2647582	C	T	5713.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	5424232	rs1909260	C	T	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	5424387	rs113047337	T	TTATC	14447.73	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	5424504	rs872163	T	C	11232.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=44.93;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	5424507	rs872164	A	G	11063.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=43.90;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr11	5424532	rs872165	A	C	6178.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	5424552	rs872166	A	G	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	5424861	rs2647581	G	A	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	5444033	.	A	G	2356.77	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:89,106:0.54:195
chr11	5451940	rs60764921	G	T	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	5452298	rs60189221	G	A	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	5461834	rs77336780	C	G	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	5529865	rs186434	G	A	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	5529920	rs2234451	G	C	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	5536537	rs393044	A	C	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	5536848	rs2017433	G	A	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	5549254	rs1498480	T	C	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	5549316	rs1846317	A	G	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	5549470	rs2840097	C	T	1085.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:62,54:0.47:116
chr11	5549531	rs1560811	T	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	5565906	rs7934354	A	G	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:100,74:0.43:174
chr11	5566030	rs1995158	A	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	5566051	rs1995157	C	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:75,72:0.49:147
chr11	5566112	rs1995156	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:65,72:0.53:137
chr11	5566365	rs1566275	T	C	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	5566489	rs10769054	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:58,93:0.62:151
chr11	5566789	rs12798586	A	G	144.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr11	5566830	rs10838299	A	C	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	5572816	rs401426	T	C	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr11	5572836	rs11360659	CT	C	312.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	5572966	rs423501	A	G	1155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=3.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=-0.660;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:45,53:0.54:98
chr11	5573044	rs9666981	A	G	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.589;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.79;ReadPosRankSum=-0.160;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:67,57:0.46:124
chr11	5573054	rs9666982	A	G	2053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.218;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.661;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=-0.226;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:69,56:0.45:125
chr11	5573073	rs1694674	A	G	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:66,59:0.47:125
chr11	5573160	rs401835	G	C	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	5602275	rs1077126	A	G	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:164,149:0.48:313
chr11	5602438	rs2341432	T	A	2306.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:126,112:0.47:238
chr11	5602605	rs2341433	G	A	5776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=0.401;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:205,157:0.43:362
chr11	5602615	rs2341434	A	G	5967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.374;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=0.825;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:214,165:0.44:379
chr11	5602679	rs892336	T	C	4449.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:223,214:0.49:437
chr11	5602790	rs2163946	A	G	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:142,115:0.45:257
chr11	5602928	rs10838375	G	C	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:94,64:0.41:158
chr11	5602968	rs10769086	G	A	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:75,64:0.46:139
chr11	5603136	rs10838376	C	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr11	5603163	rs10838377	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	5625603	rs7108470	A	G	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr11	5625847	rs3751006	A	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	5625988	rs17304278	T	C	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	5629607	rs10769121	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr11	5631479	rs3740999	A	C	753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=1.175;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:29,38:0.57:67
chr11	5631622	rs7125403	G	T	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	5632212	rs10769124	G	A	4856.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	5653417	rs4287358	AT	GA	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	5655150	rs7941976	T	A	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	5655233	rs3824951	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr11	5655722	rs368950284	TACAC	T	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.248;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr11	5655758	.	CACAT	C	228	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=28;MQ=59.51;NF=7;NR=7;PP=228;QD=16.5;SC=CACACACACACACATATATAT;SbPval=0.42;Source=Platypus;TC=58;TCF=25;TCR=33;TR=14;WE=5655771;WS=5655748;set=Platypus	GT:AD:AF:DP	0/1:44,14:0.24:58
chr11	5662319	rs7108834	C	T	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	5663920	rs66637086	CT	C	1862.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	5664356	rs59472811	T	TATATA,TATATATA	1017.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.000;QD=39.14;ReadPosRankSum=2.348;SOR=1.508;set=HC	GT:AD:AF:DP	1/2:2,8,16:0.31,0.62:26
chr11	5664831	rs3740998	C	A	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:119,83:0.41:202
chr11	5664974	rs7109861	T	C	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	5686266	rs28381981	G	A	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.447;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:86,62:0.42:148
chr11	5687320	rs35734937	T	TA	632.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.455;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.987;QD=5.86;ReadPosRankSum=1.077;SOR=0.319;set=HC	GT:AD:AF:DP	0/1:50,58:0.54:108
chr11	5687562	rs10769167	G	C	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.25;ReadPosRankSum=-0.452;SOR=0.097;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr11	5689144	rs11821656	G	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr11	5691191	rs4309185	C	T	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr11	5700340	rs3740995	T	C	1227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=-0.171;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:88,64:0.42:152
chr11	5701074	rs11601507	C	A	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=4.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.91;ReadPosRankSum=-2.500;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:84,59:0.41:143
chr11	5701281	rs3740996	G	A	4428.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:148,203:0.58:351
chr11	5701409	rs3824949	G	C	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	5717762	rs10838543	T	C	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	5718517	rs7935564	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	5719504	rs74813137	A	G	463.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chr11	5719750	rs1063303	G	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	5719848	rs7950912	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	5729946	rs35592896	CT	C	145.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-1.253;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr11	5755605	rs1498552	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	5758062	rs7397032	T	C	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr11	5758118	rs7396766	A	C	8642.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	5776287	rs7936512	C	T	10029.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr11	5776470	rs7394584	T	G	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr11	5776623	rs7396938	A	T	6903.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	5777023	rs10742782	C	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	5777053	rs10742783	A	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	5809308	rs7934670	A	T	5402.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	5809548	rs7948009	G	A	6469.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	5810105	rs61619938	TA	T	125.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	5841856	rs4758435	C	T	7780.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	5842310	rs8181529	T	G	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	5842356	rs8181512	A	G	9871.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	5862731	rs10838719	A	G	2025.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:82,94:0.53:176
chr11	5877909	rs12417880	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr11	5877979	rs12419602	T	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:61,61:0.50:122
chr11	5905409	rs117857542	T	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:18,27:0.60:45
chr11	5905412	rs17233457	C	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr11	5906048	rs4758168	G	A	2752.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:117,126:0.52:243
chr11	5906073	rs4757986	G	T	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:115,117:0.50:232
chr11	5906143	rs11823809	T	C	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:170,140:0.45:310
chr11	5906192	rs1453435	A	C	3610.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:242,183:0.43:425
chr11	5906203	rs11823828	T	G	4480.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:255,214:0.46:469
chr11	5906291	rs11823842	T	C	4115.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:244,205:0.46:449
chr11	5921984	rs80336774	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	5922222	rs10160336	T	C	3321.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:178,165:0.48:343
chr11	5922707	rs7106300	C	T	1856.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:143,94:0.40:237
chr11	5923297	rs4601752	A	G	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,39:0.50:78
chr11	5968728	rs1840178	T	C	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:105,101:0.49:206
chr11	5969185	rs10769378	A	G	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:239,215:0.47:454
chr11	5989415	rs7114672	C	A,T	3559.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=142;set=Intersection	GT:AF:DP	1/2:0.54,0.46:142
chr11	6007272	rs4237768	A	G	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	6007613	rs4354673	T	G	7031.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	6007680	rs4436524	A	G	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	6007743	rs4436525	A	G	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr11	6007899	rs4501959	C	T	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:111,127:0.53:238
chr11	6023581	rs11040248	A	G	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:158,143:0.48:301
chr11	6023640	rs11040249	T	C	2463.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:149,129:0.46:278
chr11	6023818	rs10839221	G	A	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:89,69:0.44:158
chr11	6048056	rs11040335	T	C	6631.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr11	6173346	rs11826453	G	T	3132.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:142,143:0.50:285
chr11	6173364	rs325695	T	A	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	6220376	rs325610	G	C	1274.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:57,61:0.52:118
chr11	6221169	rs10839531	A	G	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:113,100:0.47:213
chr11	6221214	rs11040799	T	A	2690.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:143,125:0.47:268
chr11	6227083	rs10742968	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr11	6231731	rs10769671	C	T	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	0/1:236,206:0.47:442
chr11	6238960	rs3750943	C	A	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:171,201:0.54:372
chr11	6239344	rs3750944	G	A	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:60,48:0.44:108
chr11	6239739	rs3833754	CT	C	273.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	6243804	rs3750945	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	6243843	rs3750946	C	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	6243963	rs3750947	G	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	6243982	rs325606	T	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	6281108	rs2929180	T	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,27:0.50:54
chr11	6281400	rs11040819	T	C	4429.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:221,213:0.49:434
chr11	6292065	rs1800843	C	A	2663.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:98,119:0.55:217
chr11	6292837	rs10839535	CG	GA	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	6340525	rs12570	A	T	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	6340706	rs1051992	A	G	7847.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	6340869	rs79889908	A	G	2935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=0.939;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:165,149:0.47:314
chr11	6341684	rs2682123	C	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	6411930	.	CCTGGTGCTGGCG	C	3515.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=271;set=Intersection	GT:AD:AF:DP	0/1:125,95:0.43:220
chr11	6411935	rs1050228	T	C	2465.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:95,117:0.55:212
chr11	6416959	rs1800606	C	T	11264.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	6453332	rs17242666	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr11	6459838	rs10500670	C	T	829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=0.028;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:48,41:0.46:89
chr11	6462087	rs35862450	G	A	2204.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:119,110:0.48:229
chr11	6471722	rs17821052	T	G	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr11	6498175	rs113087339	C	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr11	6500309	rs2253104	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:33,43:0.57:76
chr11	6503127	rs2303492	G	A	1415.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:56,62:0.53:118
chr11	6519642	rs11604149	G	A	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:142,104:0.42:246
chr11	6520015	rs11040899	G	T	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,68:0.45:150
chr11	6520164	rs2555158	T	A	643.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:54,34:0.39:88
chr11	6524240	rs11040900	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-1.393;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:14,24:0.63:38
chr11	6530278	rs10839568	C	T	3099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=1.106;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:178,161:0.47:339
chr11	6532519	rs4758423	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,54:0.61:88
chr11	6541580	rs2555143	T	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr11	6549634	.	GGTGT	G	895.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=47.14;ReadPosRankSum=0.080;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr11	6549779	rs4633449	A	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:42,35:0.45:77
chr11	6549995	rs7480644	A	G	1340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.12;ReadPosRankSum=-1.263;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:34,40:0.54:74
chr11	6550004	rs2344828	A	G	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.139;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.04;ReadPosRankSum=1.547;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,30:0.45:66
chr11	6550309	rs2344829	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,42:0.64:66
chr11	6554941	rs4282961	C	A	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:139,86:0.38:225
chr11	6555365	rs7103810	A	G	10640.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr11	6560141	rs11040914	A	C	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	6561270	rs10839577	A	G	2664.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:142,130:0.48:272
chr11	6567895	rs11270441	C	CTGCCCTACTGCA	4231.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	6578613	.	TGAG	T	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.563;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:158,17:0.10:175
chr11	6585007	rs11040923	G	A	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	6585502	rs7107072	T	C	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	6591157	rs10839585	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	6622714	rs2288283	G	A	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	6622857	rs11826421	G	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	6626049	rs55802517	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr11	6626072	rs12272856	C	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:48,25:0.34:73
chr11	6629530	rs2048092	G	A	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:73,57:0.44:130
chr11	6629665	rs1043388	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:61,51:0.46:112
chr11	6630028	rs11314683	TC	T	19483.73	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr11	6630833	rs1043390	G	A	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:51,53:0.51:104
chr11	6631300	rs41310330	G	A	1557.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:82,73:0.47:155
chr11	6632349	rs2555174	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	6632857	rs1876300	A	T	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:82,56:0.41:138
chr11	6636106	rs1128396	T	A	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,31:0.41:75
chr11	6637504	rs2072651	G	A	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:22,15:0.41:37
chr11	6637518	rs7943955	A	G	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	6637739	rs35039601	AT	A	710.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=13.41;ReadPosRankSum=0.517;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:6,47:0.89:53
chr11	6638174	rs1800710	A	G	2681.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:118,125:0.51:243
chr11	6638506	rs1800738	A	T	2585.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:111,121:0.52:232
chr11	6645578	rs139345379	G	A	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:105,106:0.50:211
chr11	6646108	rs10458926	T	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:43,52:0.55:95
chr11	6647622	rs11827437	T	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:104,76:0.42:180
chr11	6647931	rs34782445	C	T	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:111,82:0.42:193
chr11	6647978	rs4442534	C	T	2269.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:140,111:0.44:251
chr11	6648424	rs4758443	G	A	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr11	6648937	rs11040937	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr11	6651810	rs2659872	A	G	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,86:0.49:176
chr11	6652618	rs2659871	C	T	5353.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:272,262:0.49:534
chr11	6653232	rs2659870	C	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,43:0.52:83
chr11	6654613	rs11040938	A	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr11	6655332	rs2659869	T	A	5498.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:294,278:0.49:572
chr11	6655433	rs997263	G	A	2872.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:147,142:0.49:289
chr11	6662086	rs147414014	C	T	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:227,202:0.47:429
chr11	6703334	rs8109	A	G	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr11	6703764	rs7107519	T	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chr11	6703866	rs12285818	C	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr11	6704051	rs16917042	G	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:45,47:0.51:92
chr11	6704692	rs72894755	G	T	109.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr11	6735835	rs7951709	C	T	1448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=0.971;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:73,75:0.51:148
chr11	6736758	.	G	T	2239.77	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:91,108:0.54:199
chr11	6736784	rs61735337	C	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:108,100:0.48:208
chr11	6737974	rs72899780	A	G	2931.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:153,142:0.48:295
chr11	6738952	rs10769716	G	T	3789.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:170,178:0.51:348
chr11	6739109	rs7112561	G	A	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:140,192:0.58:332
chr11	6739407	rs12284429	A	G	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:68,60:0.47:128
chr11	6739814	rs7114441	C	T	14266.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	6739822	rs7102825	T	C	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.39;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	6739850	rs58825115	G	A	3336.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:190,166:0.47:356
chr11	6740308	rs12223353	C	T	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:109,99:0.48:208
chr11	6789929	rs11828782	C	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr11	6790028	rs10839616	C	G	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:69,67:0.49:136
chr11	6790106	rs7102536	T	C	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	6807243	rs497681	G	A	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.465;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-2.416;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:102,85:0.45:187
chr11	6807330	rs11041023	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr11	6816778	rs866347	A	G	8412.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	6816875	rs7122644	G	A	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	6867894	rs7105094	T	C	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	6891385	rs2741764	G	A	5724.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:310,281:0.48:591
chr11	6891704	rs10839632	T	C	5285.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:286,257:0.47:543
chr11	6898663	rs10839635	G	A	2258.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:111,107:0.49:218
chr11	6913127	rs2741804	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr11	6913244	rs1965208	A	G	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	6942476	rs10839658	C	A	3064.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:181,150:0.45:331
chr11	6942695	rs12806437	C	T	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:88,92:0.51:180
chr11	6962957	rs2857891	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr11	6962971	rs10839663	C	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr11	6965012	rs2515947	C	G	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	6976988	rs2239731	A	T	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:139,109:0.44:248
chr11	6977128	.	A	C	1126.77	.	AC=1;AF=0.500;AN=2;DP=116;set=Intersection	GT:AD:AF:DP	0/1:57,57:0.50:114
chr11	6977175	rs2239730	G	C	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:44,40:0.48:84
chr11	7022038	rs12575236	A	G	3879.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:173,188:0.52:361
chr11	7022160	rs2857919	A	G	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	7022531	rs1156525	A	T	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	7022717	rs1156526	T	C	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	7059960	rs12801277	A	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	7063755	rs7123944	C	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	7064709	rs150306147	G	A	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:84,84:0.50:168
chr11	7065289	rs6578821	C	A	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	7070866	rs1552727	G	A	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	7071031	rs1552726	G	A	6981.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	7079038	rs10839708	G	A	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	7091772	rs10769763	C	A	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	7110363	rs4758158	G	A	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:146,172:0.54:318
chr11	7110751	rs11041171	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	7324475	rs4412741	T	C	12357.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr11	7335424	rs2035639	C	G	1866.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:123,97:0.44:220
chr11	7439093	rs4757993	G	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	7570607	rs7122137	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr11	7570840	rs35121536	C	CTTT	964.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=12.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.098;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:71,45:0.39:116
chr11	7570898	rs7125594	G	A	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,19:0.40:48
chr11	7586738	rs6578874	G	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr11	7598952	rs6578880	C	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	7614492	rs7115173	A	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:66,64:0.49:130
chr11	7614531	rs7129888	C	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:42,23:0.35:65
chr11	7619518	rs4758206	T	C	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=0.686;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:22,23:0.51:45
chr11	7627352	rs34721595	C	A	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.990;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chr11	7642031	rs10769813	G	A	772.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr11	7642407	rs10839822	T	C	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	7649640	rs6578886	C	G	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	7650607	rs6578887	A	C	5533.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	7652385	rs4130354	T	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	7660921	rs11041491	C	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	7662361	rs10839829	C	T	2020.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr11	7662732	rs4643071	C	T	4391.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	7663726	rs4402283	T	C	2308.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	7663779	rs3861066	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	7670160	rs4421737	T	C	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	7670249	rs4237757	A	G	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	7670305	rs4758008	C	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	7670353	rs4758009	A	C	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr11	7670440	rs4758209	A	G	7220.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	7671974	rs11041497	C	T	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	7672272	rs3923491	G	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	7673015	rs5864	G	A	7639.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	7686596	rs13172	G	A	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	7686602	rs16411	G	GTGTT	7594.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	7686674	rs13854	T	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	7687146	rs67173996	G	A	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	7687265	rs59114959	A	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	7687669	rs12796110	A	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	7687715	rs12801394	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	7689633	rs10743030	A	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	7690685	rs4631871	T	C	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	7693853	rs57207415	GCA	G,GCACACACA	3805.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=162;set=Intersection	GT:AF:DP	1/2:0.56,0.40:131
chr11	7710729	rs4505055	C	G	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	7710742	rs4365041	A	T	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	7710750	rs4277100	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	7710877	rs4503519	C	T	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	7712471	rs4509745	C	T	4105.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	7716549	rs4287332	C	G	3403.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	7716855	rs4528317	T	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	7717884	rs4075013	C	G	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr11	7720426	rs4367936	C	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr11	7720453	rs35619418	A	AGG	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr11	7721743	rs12279973	C	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr11	7721870	rs10839849	G	A	4701.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	7723171	rs5789540	GA	G	1086.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:43,37:0.46:80
chr11	7723683	rs4373911	G	A	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	7725092	rs3924747	C	T	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:21,26:0.55:47
chr11	7725173	rs3924748	G	A	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.177;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=4.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.049;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:95,78:0.45:173
chr11	7725454	rs11041539	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.494;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=-1.335;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	7727706	rs12364824	T	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr11	7727872	rs12289558	T	C	1383.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr11	7750622	rs4237761	T	C	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:119,85:0.42:204
chr11	7794545	rs1482784	C	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:160,118:0.42:278
chr11	7794650	rs371799	G	C	2197.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:164,116:0.41:280
chr11	7794976	rs980145	T	A	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:162,187:0.54:349
chr11	7817420	rs7949546	T	A	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr11	7817434	rs7931990	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr11	7817512	rs7931212	G	T	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:49,47:0.49:96
chr11	7817538	rs7949771	T	C	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,39:0.48:82
chr11	7817665	rs72484720	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:97,81:0.46:178
chr11	7817852	rs76615008	C	G	7509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=6.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.63;ReadPosRankSum=-0.180;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:169,195:0.54:364
chr11	7817856	rs78460198	C	T	7444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=5.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=1.004;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:178,194:0.52:372
chr11	7817959	rs73406603	G	A	2971.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:133,141:0.51:274
chr11	7818056	rs73406604	T	C	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:114,94:0.45:208
chr11	7818151	rs73406606	G	A	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:110,94:0.46:204
chr11	7818190	rs73406607	C	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:124,104:0.46:228
chr11	7818313	rs73406609	C	T	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:139,120:0.46:259
chr11	7818383	rs138967151	G	GATATGGTTACCAGGTAGATGC	4067.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.32;ReadPosRankSum=2.347;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:123,99:0.45:222
chr11	7818518	rs73406611	C	T	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr11	7846506	rs16932488	G	C	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr11	7847208	rs1482791	T	C	3520.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:209,171:0.45:380
chr11	7847466	rs1482792	A	G	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.69;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	7847466	.	AGATAAC	GGATAAC,GGATAAT	641	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=23;MQ=60.0;NF=41,23;NR=51,27;PP=501,641;QD=5.82360013638;SC=TAGTATCCTCAGATAACCCCA;SbPval=0.51;Source=Platypus;TC=93;TCF=41;TCR=52;TR=92,50;WE=7847480;WS=7847456;set=Platypus	GT:AF:DP	0/1:0.99:93
chr11	7847472	rs1482793	C	T	1352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.30;ReadPosRankSum=-0.066;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:45,65:0.59:110
chr11	7847523	rs1482794	T	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr11	7870670	rs61759825	A	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:79,62:0.44:141
chr11	7870760	rs17221305	G	A	2923.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:163,144:0.47:307
chr11	7871011	rs4758022	A	G	8867.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	7949134	rs12273639	T	A	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr11	7949192	rs11041669	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr11	7949350	rs4758258	A	G	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	7949791	rs7933807	A	C	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:91,86:0.49:177
chr11	7949860	rs7928451	G	A	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:191,182:0.49:373
chr11	7950024	rs12272735	A	G	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:154,161:0.51:315
chr11	7960045	rs6578915	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	7961130	rs4758259	C	T	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr11	7961146	rs9787855	A	G	430.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr11	8009241	rs12421289	C	T	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr11	8009420	rs12278319	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	8014479	rs4758267	C	T	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	8061100	rs10769865	C	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=-1.411;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr11	8103021	rs376341951	C	T	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=-2.215;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:103,116:0.53:219
chr11	8103104	rs11041733	G	T	6149.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	8111540	rs2272382	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	8115762	rs7396690	C	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	8117228	rs11041739	A	G	6864.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	8118103	rs2242501	A	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	8118116	rs2242502	A	G	3501.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	8118185	rs10160258	C	G	6942.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	8118200	rs7931842	C	A	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	8119063	rs7950355	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	8122234	rs7394561	G	A	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	8246326	rs34544683	G	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:57,43:0.43:100
chr11	8246343	rs3816490	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:37,45:0.55:82
chr11	8251921	rs3750952	G	C	1987.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:106,101:0.49:207
chr11	8284838	rs204931	A	G	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	8284981	rs176083	A	C	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	8284995	rs204929	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	8285124	rs2071458	A	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	8483335	rs1900273	G	A	722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.95;ReadPosRankSum=0.912;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:63,41:0.39:104
chr11	8496516	rs2289923	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	8639325	rs4929924	G	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:27,24:0.47:51
chr11	8641501	rs7946508	C	A	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	8641882	rs7943945	G	A	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	8642218	rs7950166	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr11	8644530	rs4929948	T	G	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:128,114:0.47:242
chr11	8644562	rs10533257	TCATA	T	2281.73	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:77,62:0.45:139
chr11	8646237	rs12803166	G	T	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:70,78:0.53:148
chr11	8646763	rs7935453	G	C	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr11	8662090	rs11042022	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	8662516	rs11042023	T	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr11	8662649	rs61743935	A	G	1326.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.06;ReadPosRankSum=0.230;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:46,64:0.58:110
chr11	8668082	rs61741649	C	T	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:137,128:0.48:265
chr11	8669437	rs10840100	A	G	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr11	8670172	rs7950801	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	8671369	rs10840101	C	T	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.205;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:54,55:0.50:109
chr11	8693405	rs11517718	G	A,T	3144.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=125;set=Intersection	GT:AF:DP	1/2:0.48,0.52:125
chr11	8704965	rs2073684	C	T	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	8717003	rs2270956	C	T	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	8719615	rs10840113	C	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	8721611	rs36089509	TG	T	382.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr11	8732300	.	GCACACA	G,GCA	1664.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;QD=36.99;SOR=1.923;set=HC	GT:AD:AF:DP	1/2:0,18,27:0.40,0.60:45
chr11	8735662	rs931756	G	A	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	8736046	rs931757	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	8747822	rs7128811	T	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	8751640	rs3812762	G	C	2265.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:155,116:0.43:271
chr11	8751889	rs3794153	C	G	2894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.011;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:195,146:0.43:341
chr11	8788168	rs10743089	A	T	513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.51;ReadPosRankSum=0.945;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr11	8788225	rs10734637	A	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr11	8797684	.	CACGT	C	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=1.373;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr11	8797693	.	GCA	G	301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.476;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.73;ReadPosRankSum=2.117;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr11	8797703	.	G	GCACACACACACACACA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=2.295;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chr11	8797705	rs151193662	G	A	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=2.278;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:32,10:0.24:42
chr11	8797707	rs66512440	GCACACA	G,ACACACA	1346.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.41;SOR=2.147;set=HC	GT:AD:AF:DP	1/2:0,18,18:0.50,0.50:36
chr11	8797715	.	A	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.39;ReadPosRankSum=2.203;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr11	8797717	.	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=2.442;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:29,15:0.34:44
chr11	8933853	rs2742519	T	G	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	8934101	rs2742518	A	G	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	8938787	rs2016942	A	G	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr11	8942999	rs2568023	G	A	7396.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	8946950	rs3751068	G	T	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	8947021	rs2653588	A	G	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	8947283	rs3751066	G	C	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	8947586	rs11042127	C	G	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.682;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:71,64:0.47:135
chr11	8948680	rs3751065	A	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	8951230	rs3763913	C	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	8959511	rs4910179	T	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	8959545	rs4909951	C	A	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	8970083	rs2653604	C	A	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	8977691	rs2742488	C	G	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	8977707	rs2568069	G	A	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	8977830	rs2568068	A	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:101,90:0.47:191
chr11	8983547	rs2163626	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	8985916	rs3833778	G	GGGCTCA	3449.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:69,90:0.57:159
chr11	9001289	.	TAA	T	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.199;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr11	9001453	rs74235492	T	C	74.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.96;ReadPosRankSum=1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr11	9001471	rs67717636	TG	T	73.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=18.30;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,3:0.75:4
chr11	9004376	rs35481824	CT	C	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.061;QD=3.96;ReadPosRankSum=1.811;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:42,39:0.48:81
chr11	9005036	rs2568046	T	A	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	9051385	rs7479998	C	A	3005.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	9052170	rs10769983	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	9052423	rs7395988	A	C	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	9069046	rs3751055	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:113,93:0.45:206
chr11	9072140	rs3751052	C	T	1159.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:69,56:0.45:125
chr11	9081926	rs7112378	C	T	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	9096189	rs7930311	G	C	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	9167399	rs10732517	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	9171775	rs7123970	A	G	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=1.111;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr11	9172432	rs10769995	A	G	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	9187634	.	C	CT	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.75;ReadPosRankSum=0.283;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr11	9192336	rs10550560	TAC	T	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr11	9198276	rs7394878	T	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:57,52:0.48:109
chr11	9199650	rs60693427	C	T	1092.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:66,56:0.46:122
chr11	9228785	rs7396439	G	A	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr11	9305177	rs72861351	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr11	9309405	rs5014247	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	9316937	rs4601780	G	A	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	9321399	rs10743101	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	9321415	rs11042272	C	T	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.275;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,17:0.47:36
chr11	9336071	rs4325312	A	G	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:78,73:0.48:151
chr11	9336093	rs72850544	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:47,60:0.56:107
chr11	9406349	rs4606477	T	C	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	9537904	rs10743108	G	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	9537978	rs12276181	A	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr11	9595732	rs11042428	C	G	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.086;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=1.042;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr11	9603236	rs4370932	C	T	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.620;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:52,26:0.33:78
chr11	9715628	rs360049	C	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	9724837	rs2572940	C	T	1753.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:93,84:0.47:177
chr11	9725030	rs2572939	T	A	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:123,91:0.43:214
chr11	9734945	rs1390679	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	9735192	rs1496477	G	T	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.177;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr11	9746137	rs419412	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	9746201	rs1695613	G	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	9746552	rs1960386	A	G	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	9748483	rs2453831	T	C	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	9748620	rs2453832	G	T	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.30;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	9748624	rs2454612	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.80;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	9749552	rs67364105	CT	C	761.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	9749554	rs56116109	T	G	770.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	9749645	rs397686	A	C	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	9749894	rs413976	T	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr11	9751051	rs34125178	C	CT	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=1.810;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chr11	9751089	rs12360647	G	A	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr11	9754221	rs360157	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr11	9759608	rs93139	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	9759713	rs93138	T	G	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.26;ReadPosRankSum=-0.190;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:42,48:0.53:90
chr11	9759918	rs173396	G	A	199.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	9762056	rs117185160	C	T	112.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	9769562	rs415895	C	G	2690.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	9771687	rs6483656	G	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=58.84;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	9802228	rs360124	G	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	9802952	rs3763862	A	C	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr11	9805784	rs10709701	AC	A	607.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr11	9810591	rs360133	G	A	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-0.994;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:28,35:0.56:63
chr11	9811039	rs11042496	C	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:45,48:0.52:93
chr11	9812236	rs2645029	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	9830732	rs10770066	A	T	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	9853777	rs12574508	G	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.73;ReadPosRankSum=-0.903;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:27,25:0.48:52
chr11	9861009	rs7483882	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:52,32:0.38:84
chr11	9875353	rs375686	G	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	9878332	rs11322743	AT	A	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.915;QD=4.66;ReadPosRankSum=1.082;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	9917620	rs4910073	G	C	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.97;ReadPosRankSum=1.037;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:49,36:0.42:85
chr11	9983810	rs35824679	A	AC	479.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	10010964	rs11826263	A	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.38;ReadPosRankSum=-1.016;SOR=0.078;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr11	10014462	rs56223901	C	A	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr11	10019879	rs16907355	G	A	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.741;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.90;ReadPosRankSum=1.242;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:36,35:0.49:71
chr11	10022585	rs7128234	A	T	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	10024311	rs10500716	A	G	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr11	10215598	rs4910097	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr11	10472492	rs35417007	GC	G	3557.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	10518289	rs1466426	T	C	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	10518521	rs2071016	C	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	10521764	rs3741041	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:123,88:0.42:211
chr11	10521850	rs3741039	G	A	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr11	10522983	rs1870951	G	T	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	10526060	rs7943804	C	T	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	10536504	.	G	C	2323.77	.	AC=1;AF=0.500;AN=2;DP=225;set=Intersection	GT:AD:AF:DP	0/1:110,115:0.51:225
chr11	10553355	rs4910153	C	T	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	10553672	rs4910154	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	10553675	rs4910155	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	10555589	rs1065052	A	G	2305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.45;ReadPosRankSum=0.695;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:124,120:0.49:244
chr11	10581217	rs17403795	G	A	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr11	10581623	rs746164	C	G	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	10585387	rs17403977	G	C	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr11	10598229	rs1364738	A	C	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr11	10601931	rs76857254	G	A	1014.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:75,51:0.40:126
chr11	10603582	rs75642969	G	C	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:49,57:0.54:106
chr11	10603648	rs2288236	A	G	292.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr11	10603710	rs75913114	T	C	153.98	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:1,6:0.86:7
chr11	10615473	rs7126245	C	T	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	10631247	rs3741042	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr11	10645289	rs61892975	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:47,24:0.34:71
chr11	10645569	rs2303402	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr11	10647702	rs2241489	G	A	1685.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:52,77:0.60:129
chr11	10649161	rs1425152	C	A	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:150,124:0.45:274
chr11	10650329	rs2278125	C	T	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr11	10653729	rs3741032	C	G	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=1.211;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr11	10655609	rs2162044	C	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	10655623	rs11042902	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr11	10673739	rs4909945	T	C	2655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=5.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-1.140;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:157,140:0.47:297
chr11	10709168	rs4910169	T	C	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	10709194	rs1035694	C	T	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	10709415	rs61314456	C	CT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.136;QD=6.32;ReadPosRankSum=0.188;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr11	10711817	rs7123827	A	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr11	10711918	.	T	TA	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.532;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-1.551;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:55,26:0.32:81
chr11	10715124	rs10770136	T	C	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.483;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr11	10773009	.	G	GTTA	2223.73	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:65,59:0.48:124
chr11	10773049	rs2279697	G	A	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	10786023	rs3830388	A	AAGTTG	1358.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr11	10786142	rs3736326	C	T	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.114;QD=8.51;ReadPosRankSum=1.763;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:96,79:0.45:175
chr11	10786175	rs7118399	C	T	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:90,94:0.51:184
chr11	10789673	.	A	G	799.77	.	AC=1;AF=0.500;AN=2;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,42:0.40:104
chr11	10820663	rs71034785	T	TA	1154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.924;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=4.840;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.934;QD=10.89;ReadPosRankSum=0.224;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:24,82:0.77:106
chr11	10821055	rs3736327	C	T	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	10822202	rs4910190	G	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	10822350	rs7951708	C	T	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	10823079	rs10840492	T	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	10823576	.	C	CACACTCCTAAAATAGTTTCATGTTTTAATAGCAAATGAAATCACATATATTGCATAATTTAACATTTGTTGCCTAA	2285.73	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=1142.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	10823815	rs7105210	C	T	4663.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	10824540	rs10743150	G	A	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	10824731	rs2270620	C	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	10826341	rs2242360	A	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	10827418	rs11042964	T	C	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	10828361	rs10743151	C	A	2640.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	10828490	rs11373962	T	TA	630.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	10830106	rs7127279	A	G	3502.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	11292700	rs10831567	G	C	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:35,48:0.58:83
chr11	11292945	rs35408328	A	C	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr11	11314538	rs10437598	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr11	11348828	rs745181	A	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr11	11354212	rs142425382	A	T	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr11	11354393	rs901554	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr11	11373508	rs7948121	T	C	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	11373587	rs7945066	A	G	8407.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	11373635	rs1056963	C	T	12415.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr11	11373808	rs1056951	T	G	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	11373925	rs4243927	A	C	11430.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr11	11373960	rs2071461	C	T	3736.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:234,191:0.45:425
chr11	11374016	rs2896586	T	A	8054.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	11374269	rs2071460	A	G	3219.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:192,161:0.46:353
chr11	11374283	rs2896585	T	G	9607.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:2,355:0.99:357
chr11	11398698	rs10444245	G	A	96.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr11	11905993	rs10765894	C	T	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr11	11906050	rs34511735	G	C	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr11	11913585	rs11022079	G	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:73,59:0.45:132
chr11	11954786	rs10741562	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr11	11972054	rs11022090	A	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr11	11976628	rs7933089	G	A	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:75,65:0.46:140
chr11	11986061	rs3206824	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:88,94:0.52:182
chr11	11989899	rs2291599	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:87,52:0.37:139
chr11	12115630	rs7104830	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.55;ReadPosRankSum=-2.093;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	12183846	rs28625145	C	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:145,137:0.49:282
chr11	12225946	rs3763823	T	G	8798.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	12229437	rs16910765	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr11	12229655	rs2279390	T	G	1311.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr11	12231179	rs2046488	G	T	304.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr11	12241626	rs7101833	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr11	12242030	rs4237704	A	G	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr11	12244468	rs10831769	G	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr11	12246204	rs78986346	G	A	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:113,95:0.46:208
chr11	12246233	rs3816921	G	C	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:142,124:0.47:266
chr11	12262410	rs2279613	G	A	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	12262476	rs2641936	C	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	12263665	rs2403615	A	G	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	12265542	rs2270511	A	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,70:0.50:141
chr11	12265688	rs2270512	T	C	2658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=0.157;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:143,130:0.48:273
chr11	12279937	rs2270513	T	C	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	12279991	rs11022265	G	C	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	12283928	rs10765933	C	T	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	12313887	rs1874043	C	G	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	12315186	rs10741578	G	A	4292.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:239,218:0.48:457
chr11	12315407	rs10741579	G	C	5374.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	12315716	rs1493951	C	T	5071.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	12315848	rs1493952	C	T	2896.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:144,134:0.48:278
chr11	12315891	rs1493953	G	A	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	12315915	rs1493954	A	G	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:192,162:0.46:354
chr11	12316386	.	CCTA	C	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.778;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:65,9:0.12:74
chr11	12316389	rs3812754	A	C	310.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.512;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.524;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr11	12345459	rs903213	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	12379792	rs10741583	G	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	12495575	rs2288290	C	G	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr11	12495607	rs2288291	T	C	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	12495623	rs7109678	G	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	12517892	rs138094049	A	AGAGTGCATGCATGCAT	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	12518237	rs12223547	G	T	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr11	12532912	rs12283539	A	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	12534707	rs2243707	G	A	9595.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	12534808	rs2403631	A	G	10425.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr11	12535209	rs2288293	C	T	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	12535415	rs11022380	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	12535485	rs56043920	CACAGGCTCCTGCACTA	C	5201.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	12886540	rs10500764	C	T	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	12903443	rs2304733	C	T	2450.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:199,132:0.40:331
chr11	12923434	rs2289436	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr11	12951623	rs2245140	A	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	12951926	rs2727360	A	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	12952015	rs2727361	C	T	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	13032679	rs10603579	AGG	A	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	13032686	rs11399899	T	TC	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	13398129	rs10741617	T	A	6519.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	13399791	rs10832030	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	13400051	rs60280155	T	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:60,70:0.54:130
chr11	13407184	rs2290034	C	T	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:29,25:0.46:54
chr11	13441126	rs7114113	A	G	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:88,64:0.42:152
chr11	13443250	rs3789325	C	T	1552.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:90,78:0.46:168
chr11	13443459	rs11022814	A	T	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr11	13514053	rs6256	G	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:89,74:0.45:163
chr11	13514417	rs694	C	T	46.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	13716530	rs7130943	A	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr11	13984583	rs3761859	C	T	3477.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:164,175:0.52:339
chr11	13984720	rs10741631	A	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	14101493	rs5789820	G	GC	6066.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	14246296	rs1025412	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	14264916	rs2303973	A	G	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:89,79:0.47:168
chr11	14303282	rs2303972	T	A	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:172,174:0.50:346
chr11	14329984	rs2915408	C	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	14385941	rs75033079	G	A	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.09;ReadPosRankSum=-0.007;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:59,52:0.47:111
chr11	14480309	rs34021860	CT	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.957;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-1.133;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	14486608	.	TACACACACAC	T	1231	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=6;HapScore=1;MGOF=14;MMLQ=28;MQ=58.08;NF=1;NR=4;PP=1231;QD=246.8;SC=TGGTTAAAAATACACACACAC;SbPval=0.71;Source=Platypus;TC=9;TCF=2;TCR=7;TR=5;WE=14486625;WS=14486598;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	14497269	rs2597194	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:40,50:0.56:90
chr11	14501267	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.826;QD=0.95;ReadPosRankSum=-0.281;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:71,18:0.20:89
chr11	14501296	rs2575857	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,47:0.67:70
chr11	14504774	.	C	CCA	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.19;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr11	14512060	rs2597189	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr11	14515997	.	ATT	A	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.946;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=9.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=0.708;SOR=2.490;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr11	14516004	rs201780513	T	TAAA	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.538;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=9.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.83;ReadPosRankSum=0.738;SOR=2.490;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr11	14520375	rs142738460	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.335;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr11	14520566	rs3214792	T	TA	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	14532338	rs2597218	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr11	14539639	rs2575849	T	A	174.82	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	14540671	rs1823466	A	G	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	14540827	rs79966935	C	T	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:107,81:0.43:188
chr11	14632570	rs1403247	A	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:59,85:0.59:144
chr11	14810762	rs4757268	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:69,54:0.44:123
chr11	14825704	rs3740823	A	G	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr11	14852490	rs1037378	G	A	77.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	14865666	rs2167453	T	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr11	14991539	rs5239	T	C	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=26.21;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	15096419	rs1540139	C	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:1,53:0.98:54
chr11	15170644	rs1714354	T	C	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	15170807	rs12222688	G	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,13:0.43:30
chr11	15197186	rs1792588	A	G	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr11	15199957	rs1714376	T	C	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	15243059	rs17507577	G	A	2412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-2.081;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:116,119:0.51:235
chr11	15257046	rs11023479	G	A	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr11	15260367	rs72857781	C	G	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr11	15267597	rs1054952	C	A	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	15267727	rs1945624	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	16117460	rs3059081	TA	T	356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.556;QD=2.90;ReadPosRankSum=0.512;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr11	16117684	.	GA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=2.803;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr11	16133413	rs4617548	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr11	16205323	rs7926424	T	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr11	16205595	rs1455111	C	T	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr11	16305351	rs12277740	G	A	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.06;ReadPosRankSum=0.187;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr11	16339918	rs34820506	C	CT	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=2.348;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:95,37:0.28:132
chr11	16760244	rs1846936	T	G	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	16805226	rs739936	C	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	16863395	rs11024053	A	G	93.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	16872653	rs35098462	G	A	1361.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:104,69:0.40:173
chr11	16874067	rs418113	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	16892477	rs402973	C	G	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=5.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.140;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:33,36:0.52:69
chr11	17035493	rs71047521	C	CA	965.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:30,31:0.51:61
chr11	17035718	rs61881311	A	G	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:122,112:0.48:234
chr11	17036012	rs113662255	A	G	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr11	17096059	rs11024148	A	G	7429.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:2,272:0.99:274
chr11	17096150	rs7125607	T	A	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr11	17099613	rs16933823	G	A	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:24,19:0.44:43
chr11	17111272	rs10832733	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	17113483	rs7113396	C	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	17121648	rs17847726	G	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	17135755	rs61763074	G	A	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr11	17151073	rs17847718	C	T	62.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr11	17172133	rs2302511	T	C	8195.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	17333663	rs2521998	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	17339127	rs2634462	T	C	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	17351683	rs757081	C	G	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr11	17373438	rs34000454	G	C	2643.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:142,136:0.49:278
chr11	17393644	rs12791318	A	G	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.20;ReadPosRankSum=-1.097;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	17394073	rs10832778	C	G	2560.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:147,129:0.47:276
chr11	17408404	rs5213	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr11	17408630	rs5215	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:122,100:0.45:222
chr11	17408838	rs5216	G	C	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:152,158:0.51:310
chr11	17409572	rs5219	T	C	3039.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:178,156:0.47:334
chr11	17414409	rs118074339	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr11	17414715	rs1109591	T	C	1539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=1.629;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:83,77:0.48:160
chr11	17415190	rs4148646	C	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:97,110:0.53:207
chr11	17417504	rs739689	A	G	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.307;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:50,61:0.55:111
chr11	17418477	rs757110	C	A	1624.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:102,75:0.42:177
chr11	17419279	rs1799859	C	T	2713.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:182,143:0.44:325
chr11	17429922	rs2106865	T	C	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:2,64:0.97:66
chr11	17435936	rs4148631	G	A	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	17435966	rs4148630	G	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	17436936	rs4148626	A	G	5063.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	17448704	rs1799854	G	A	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:83,81:0.49:164
chr11	17452492	rs1799857	G	A	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:31,71:0.70:102
chr11	17452603	rs8192694	T	G	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr11	17464534	rs2073587	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr11	17481948	rs886291	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:23,39:0.63:62
chr11	17484971	rs2301703	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr11	17491571	rs10400389	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:55,58:0.51:113
chr11	17496516	rs1048099	A	G	7836.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,294:1.00:295
chr11	17498057	rs77889556	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr11	17517235	rs10832795	A	G	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	17517381	rs10530940	CAT	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	17517407	rs1859824	G	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	17519742	rs1064074	C	G	3380.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:247,182:0.42:429
chr11	17522810	rs2072234	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr11	17531449	rs2237965	G	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	17531831	rs733874	A	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.29;ReadPosRankSum=1.282;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr11	17532102	rs2237964	C	T	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr11	17533397	rs2190453	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,26:0.50:52
chr11	17533635	rs2190454	G	A	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	17537705	rs2237961	G	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr11	17538048	rs2237960	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr11	17539212	rs10766408	T	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr11	17542439	rs2240487	T	C	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	17542553	rs11024318	C	T	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-3.003;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:124,84:0.40:208
chr11	17542583	rs2108332	C	T	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=1.072;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	17542586	rs2041031	T	C	7312.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	17542649	rs2041032	T	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	17542872	rs2240488	G	C	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr11	17544873	rs148317033	G	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:54,66:0.55:120
chr11	17545091	rs4757539	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	17545141	rs41282938	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr11	17546178	rs35539374	G	A	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:60,76:0.56:136
chr11	17548239	rs72870320	C	T	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:47,62:0.57:109
chr11	17548507	rs41282940	T	C	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:50,47:0.48:97
chr11	17548737	rs12795083	T	C	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	17553105	rs2041027	G	A	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:56,44:0.44:100
chr11	17554910	rs5789992	A	ACC	1077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=28.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.97;ReadPosRankSum=1.262;SOR=3.493;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr11	17554914	rs2240489	G	C	3903.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.306;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.09;ReadPosRankSum=0.967;SOR=1.816;set=HC	GT:AD:AF:DP	1/1:1,94:0.99:95
chr11	17554916	rs2355022	C	A	2078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=33.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.89;ReadPosRankSum=-1.550;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:32,55:0.63:87
chr11	17554930	rs878546	T	C	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=49.379;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.810;SOR=6.157;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr11	17555498	rs11024319	C	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr11	17569885	rs58569858	A	G	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr11	17574588	rs4757543	T	C	2394.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:104,116:0.53:220
chr11	17582470	rs1990180	T	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	17590640	rs16934402	C	T	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr11	17627613	rs7934079	G	C	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	17635113	rs146984141	C	T	1536.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:54,72:0.57:126
chr11	17667139	rs61997203	G	C	3502.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:190,178:0.48:368
chr11	17742681	rs10832853	G	C	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:131,111:0.46:242
chr11	17868197	rs3831592	A	AT	4981.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:136,148:0.52:284
chr11	17940172	.	GAC	G	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=-0.442;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	17940200	rs74865487	T	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=3.232;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr11	17940204	.	C	CACACAT	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.799;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=3.304;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr11	17940209	.	A	ACT	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-2.133;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:40,27:0.40:67
chr11	17940211	rs1080246	T	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=6.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=2.984;SOR=1.938;set=HC	GT:AD:AF:DP	0/1:35,9:0.20:44
chr11	17940213	rs77640161	T	A	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=2.825;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr11	17948311	rs1468291	T	C	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.270;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=1.149;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:97,94:0.49:191
chr11	17948475	rs146830399	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr11	17948537	rs728639	A	G	159.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	17981047	rs211146	C	T	1309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=0.920;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:54,65:0.55:119
chr11	18023414	rs211134	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr11	18034592	rs3741202	G	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	18034605	rs3741201	C	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	18044304	rs211101	C	T	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	18047255	rs1799913	G	T	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:75,94:0.56:169
chr11	18054777	rs10832874	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:55,44:0.44:99
chr11	18063977	rs623580	A	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.386;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:29,34:0.54:63
chr11	18111872	.	C	CA	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=8.017;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.558;QD=1.64;ReadPosRankSum=-0.834;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:109,35:0.24:144
chr11	18159150	rs139790666	G	A	2502.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:100,110:0.52:210
chr11	18159169	rs2468839	A	G	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	18159254	rs4274188	A	G	12265.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr11	18194793	rs11024530	G	A	4206.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:305,217:0.42:522
chr11	18194827	rs2468774	C	G	6473.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:251,303:0.55:554
chr11	18194878	rs2445180	T	G	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:248,250:0.50:498
chr11	18194944	rs11024531	T	A	3313.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:131,147:0.53:278
chr11	18194964	rs1869788	A	G	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:144,126:0.47:270
chr11	18195051	rs2445179	T	C	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr11	18195448	rs4630269	C	T	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:85,73:0.46:158
chr11	18210480	rs2445150	T	C	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	18210580	rs2124372	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:42,49:0.54:91
chr11	18231188	rs56386150	T	TA	1305.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.212;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.46;ReadPosRankSum=0.766;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:16,81:0.84:97
chr11	18231749	rs2468789	T	G	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	18253176	rs2460827	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	18267027	rs2468844	C	T	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	18267112	rs2445173	A	G	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:159,118:0.43:277
chr11	18267135	rs56373142	C	T	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:90,132:0.59:222
chr11	18267188	rs58546509	GA	G	1369.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr11	18267353	rs2445172	A	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-2.835;QD=5.57;ReadPosRankSum=0.920;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr11	18267356	rs2445171	A	G	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.117;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.582;MLEAC=1;MLEAF=0.500;MQ=57.61;MQRankSum=-2.489;QD=4.96;ReadPosRankSum=0.707;SOR=0.147;set=HC	GT:AD:AF:DP	0/1:27,7:0.21:34
chr11	18267373	rs1671927	C	T	1395.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr11	18267431	rs76546965	C	T	3596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.258;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=48.50;MQRankSum=-9.404;QD=18.07;ReadPosRankSum=1.230;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:107,92:0.46:199
chr11	18267434	rs78891342	AA	GG	3813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.780;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.703;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.46;MQRankSum=-9.379;QD=18.34;ReadPosRankSum=0.836;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:109,99:0.48:208
chr11	18267463	rs74872559	A	G	3173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=47.64;MQRankSum=-7.437;QD=11.42;ReadPosRankSum=0.983;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:188,90:0.32:278
chr11	18267471	rs1136766	A	G	2461.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:157,126:0.45:283
chr11	18267478	rs79620496	G	A	3155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.513;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=47.41;MQRankSum=-6.677;QD=11.11;ReadPosRankSum=1.254;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:194,90:0.32:284
chr11	18267651	rs80208174	A	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	18267702	rs4757631	T	A	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	18290636	rs145067473	A	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr11	18290737	rs145097411	T	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.055;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.500;MQ=49.26;MQRankSum=-0.969;QD=3.72;ReadPosRankSum=0.330;SOR=1.303;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr11	18290859	rs1136743	C	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.904;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=11.237;MLEAC=1;MLEAF=0.500;MQ=41.81;MQRankSum=1.800;QD=17.63;ReadPosRankSum=0.840;SOR=1.118;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr11	18290866	rs1136745	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.585;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=20.506;MLEAC=1;MLEAF=0.500;MQ=41.89;MQRankSum=-1.936;QD=0.77;ReadPosRankSum=-1.159;SOR=4.166;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr11	18290874	rs1136747	T	C	835.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=8.562;MLEAC=1;MLEAF=0.500;MQ=43.17;MQRankSum=1.339;QD=18.17;ReadPosRankSum=1.938;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr11	18290880	rs28720026	C	G	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.83;QD=40.59;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	18290902	rs34068567	TT	CC	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=48.21;MQRankSum=-1.748;QD=25.54;ReadPosRankSum=0.450;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:14,26:0.65:40
chr11	18290906	rs35474820	G	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.87;MQRankSum=-2.184;QD=25.12;ReadPosRankSum=0.734;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	18291321	rs12218	T	C	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:114,119:0.51:233
chr11	18301605	rs11024601	T	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr11	18303404	rs2271997	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr11	18303533	rs61884288	G	A	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,77:0.53:144
chr11	18308088	.	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.924;QD=0.54;ReadPosRankSum=-0.858;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:61,14:0.19:75
chr11	18312953	rs4757638	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr11	18314579	rs10665418	C	CTT	694.73	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr11	18317458	rs2305564	T	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr11	18317699	rs2305565	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chr11	18327684	rs1140047	G	T	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr11	18330385	rs35952141	G	GA	802.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,50:0.47:106
chr11	18354877	rs4150561	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=1.228;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr11	18357180	rs4150579	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr11	18357270	rs4150581	A	G	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:81,82:0.50:163
chr11	18359983	rs111946613	ATGTT	A	373.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr11	18379629	rs4150661	C	A	1147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=3.664;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:57,58:0.50:115
chr11	18422113	rs5790035	C	CA	223.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	18422487	rs61736803	C	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr11	18424451	rs5030621	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	18424487	rs4820	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	18424590	rs3758680	T	A	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	18426354	rs10684351	C	CAAAAAAAAAA,CAAAAAAAAAAAA	93.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=3;set=Intersection	GT:AF:DP	0/1:1.00:2
chr11	18426365	rs369572326	G	A	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.828;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=10.414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=3.481;SOR=1.855;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	18426656	rs6486424	A	T	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=13.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-1.080;SOR=3.430;set=HC	GT:AD:AF:DP	0/1:7,11:0.61:18
chr11	18426796	rs6486425	T	G	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	18428552	rs56345574	C	CA	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr11	18428637	rs113340412	A	ATTT,ATTTT	3834.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=33.35;SOR=0.786;set=HC	GT:AD:AF:DP	1/2:3,59,53:0.51,0.46:115
chr11	18434532	rs77405133	C	A	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=-0.650;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr11	18434536	rs10766477	T	C	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.49;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	18456235	rs4757664	A	T	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr11	18456511	rs73438666	G	A	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr11	18456536	rs73438668	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,20:0.62:32
chr11	18467821	rs2658565	T	C	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	18478112	rs3839960	C	CAG	433.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr11	18487305	rs17851143	C	G	2488.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:116,123:0.51:239
chr11	18487404	rs72870279	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:33,33:0.50:66
chr11	18487425	rs2658563	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	18524208	rs2658552	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	18548574	rs1857908	T	C	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	18631527	rs11024731	T	C	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	18632984	rs10128711	T	C	6745.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	18720304	rs7946446	C	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	18729367	rs57253324	G	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	18729597	rs7110914	A	G	1357.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	18732386	rs56412752	A	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	18732426	rs4237728	TT	GC	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	18735380	rs11605980	G	A	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	18738575	rs61886892	A	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	18739437	rs75718689	C	T	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	18741847	rs11024770	G	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	18743180	rs10832975	C	G	10032.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	18763698	rs4757706	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	18764087	rs2278733	C	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	18770822	rs921082	T	C	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:60,51:0.46:111
chr11	18771041	rs2028897	G	C	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	18885006	rs72890676	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:146,114:0.44:260
chr11	18955744	rs11599929	C	T	2612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.288;ClippingRankSum=0.000;DB;DP=801;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.644;QD=3.27;ReadPosRankSum=-0.118;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:616,183:0.23:799
chr11	18955861	rs72890000	C	T	3465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120;ClippingRankSum=0.000;DB;DP=928;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.093;QD=3.77;ReadPosRankSum=0.519;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:679,240:0.26:919
chr11	18956194	rs2014931	T	C	1161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.557;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:310,86:0.22:396
chr11	18956196	rs78179510	C	T	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=3.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.697;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:307,100:0.25:407
chr11	18956230	rs144203919	C	T	2128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-1.240;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:434,144:0.25:578
chr11	18978501	rs12363322	C	A	3483.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:160,167:0.51:327
chr11	18994005	rs7114481	T	C	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	18994249	rs17496620	C	T	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:99,111:0.53:210
chr11	19077765	rs10833049	T	C	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:87,66:0.43:153
chr11	19078022	rs10833050	T	C	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr11	19167850	rs2271001	A	G	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	19169319	rs146892489	T	TC,TCC	1272.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.320;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.79;MQRankSum=0.000;QD=23.57;ReadPosRankSum=0.552;SOR=4.977;set=HC	GT:AD:AF:DP	1/2:3,24,27:0.44,0.50:54
chr11	19186826	rs2042687	A	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	19188122	rs2242458	A	G	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	19191851	rs7114038	A	G	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	19194141	rs7111850	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	19197365	rs78603780	G	A	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=1.401;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:77,59:0.43:136
chr11	19204403	rs45549043	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	19206426	rs2288251	A	T	1496.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:112,77:0.41:189
chr11	19207841	rs13451	C	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:62,77:0.55:139
chr11	19247429	rs117623539	A	G	658.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:27,29:0.52:56
chr11	19256250	rs793269	C	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr11	19259358	rs372547560	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.35;ReadPosRankSum=-0.860;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:44,29:0.40:73
chr11	19261797	rs11025068	A	T	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.311;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.917;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr11	19263370	.	CT	C	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.534;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:43,32:0.43:75
chr11	19372616	rs10655705	G	GGA	3966.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	19735987	rs2278132	A	G	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:110,103:0.48:213
chr11	19798951	.	CT	C	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.064;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:71,34:0.32:105
chr11	19901632	rs11025310	G	A	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:179,156:0.47:335
chr11	19955322	rs147604281	C	T	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:87,93:0.52:180
chr11	19955500	rs1372989	A	G	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	19961457	rs11423145	C	CT	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=-1.644;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr11	19970558	rs2585773	T	C	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	19970579	rs2707084	C	T	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	20005845	rs35295670	GC	G	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;MQ=60.32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr11	20005870	rs2568116	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr11	20057371	rs6483634	T	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:1,85:0.99:86
chr11	20065779	rs3802800	C	G	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	20066355	rs10219212	G	A	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	20072779	rs6483635	C	T	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	20098933	rs113817220	G	C	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	20099112	rs4757028	A	T	5682.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr11	20099399	rs6483641	G	T	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	20099449	rs12146551	C	T	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr11	20099541	rs6483642	C	T	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	20099767	rs7121301	A	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.57;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	20101704	rs1867114	C	T	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	20101744	rs1867115	C	A	3295.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	20101769	rs3758695	C	T	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,40:0.43:94
chr11	20104669	rs2028570	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr11	20104847	rs10657903	A	AGG	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.67;ReadPosRankSum=-0.967;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr11	20112373	rs2289560	A	G	1204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.059;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:48,57:0.54:105
chr11	20112417	rs2243624	A	C	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:60,57:0.49:117
chr11	20112492	rs1837971	G	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:43,42:0.49:85
chr11	20119373	rs10833241	C	T	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,26:0.47:55
chr11	20122392	rs2245314	C	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	20124914	rs2243411	A	C	7740.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	20129376	rs74459757	C	T	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr11	20139632	rs2245836	G	C	2211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.230;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.37;ReadPosRankSum=0.635;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:127,109:0.46:236
chr11	20178551	rs10717537	CG	C	1607.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.72;ReadPosRankSum=-1.406;SOR=2.412;set=HC	GT:AD:AF:DP	1/1:1,57:0.98:58
chr11	20178717	rs831464	G	T	1735.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:65,80:0.55:145
chr11	20385228	rs3808991	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	20385606	rs10437608	G	A	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	20398034	rs10741834	T	C	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	20403825	rs7926967	A	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	20403904	rs10766664	G	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	20404506	rs2403587	T	C	509.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=0.416;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:7,34:0.83:41
chr11	20404613	rs3824886	T	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	20404757	rs3781679	T	C	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	20411199	rs56308542	TAAAA	T	1738.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	20411418	rs7937501	G	C	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.85;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	20411424	rs7937204	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	20419028	rs7934372	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	20424326	rs10833319	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	20429454	rs10741836	T	C	3081.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	20448531	rs12797994	G	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	20473655	rs1001669	T	G	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	20483748	rs3758803	T	C	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	20515555	rs6483697	G	A	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	20529886	rs6483700	G	A	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	20622975	rs1443547	G	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:76,96:0.56:172
chr11	20623007	rs7109418	C	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:95,95:0.50:190
chr11	20623023	rs2241941	C	T	2036.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:111,100:0.47:211
chr11	20623042	rs1443548	T	C	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	20623156	rs1443549	C	G	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	20628407	rs72927519	C	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr11	20628479	rs2278649	T	C	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	20639400	rs7925597	A	G	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	20639457	rs11025653	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr11	20639479	rs11827415	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:15,25:0.62:40
chr11	20648418	rs4923548	C	T	1574.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	20652148	rs111750026	CAT	C	1030.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr11	20658679	rs2000959	C	A	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:94,99:0.51:193
chr11	20660149	rs72932948	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:60,43:0.42:103
chr11	20673832	rs72932998	C	A	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:51,50:0.50:101
chr11	20673867	rs2276433	G	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr11	20676417	rs1401793	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:148,125:0.46:273
chr11	20699394	rs1793003	C	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:36,48:0.57:84
chr11	20805286	rs8176785	G	A	2829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.37;ReadPosRankSum=-1.028;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:133,140:0.51:273
chr11	20805335	rs2280363	C	T	2557.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:126,122:0.49:248
chr11	20869250	rs117839762	G	A	1501.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:86,76:0.47:162
chr11	20940775	rs1429785	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=-1.096;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	20949115	rs2293241	C	T	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr11	20949763	rs4363596	C	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	20959185	rs1880088	A	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,12:0.44:27
chr11	20959429	rs1880087	T	C	1048.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr11	20959465	rs8176791	C	A	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:38,55:0.59:93
chr11	20959482	rs1880086	G	C	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	20959533	rs1880085	G	A	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr11	20968852	rs8176796	C	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:30,52:0.63:82
chr11	20981894	rs2280584	T	C	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr11	21305927	rs4151053	T	C	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	21306113	rs4151054	A	C	661.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr11	21392649	rs16907996	G	T	151.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chr11	21581665	rs7119475	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:17,16:0.48:33
chr11	21581805	rs8176789	C	T	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:70,71:0.50:141
chr11	21581997	rs8176790	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr11	21592228	rs4922847	C	A	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:23,21:0.48:44
chr11	22214877	rs139514865	A	AAGGAGGAGGGGAATGAGGAGGAGG	1465.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=6.441;MLEAC=1;MLEAF=0.500;MQ=61.73;MQRankSum=5.993;QD=13.20;ReadPosRankSum=-1.539;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:68,43:0.39:111
chr11	22214903	rs12792259	G	C	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:106,100:0.49:206
chr11	22225490	.	A	G	173.77	.	AC=1;AF=0.500;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr11	22233029	rs4922980	G	A	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr11	22239661	.	T	TCTCACACACACACACACA	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.691;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.49;ReadPosRankSum=0.538;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr11	22242729	rs4312063	T	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.186;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:39,34:0.47:73
chr11	22271870	rs7481951	A	T	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:35,31:0.47:66
chr11	22272061	rs192732414	A	G	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr11	22297606	rs5790245	AT	A	498.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.25;ReadPosRankSum=-1.362;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:3,32:0.91:35
chr11	22297770	rs11026488	G	C	1587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.97;ReadPosRankSum=-0.878;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:93,84:0.47:177
chr11	22301410	rs67178076	CTT	C	144.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.393;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=6.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.03;ReadPosRankSum=1.383;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	22363396	rs1562447	T	A	2115.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:85,96:0.53:181
chr11	22363400	rs72636009	G	T	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:89,79:0.47:168
chr11	22364744	rs2246710	G	A	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:81,78:0.49:159
chr11	22364939	rs2278750	G	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr11	22384166	rs2290046	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,16:0.39:41
chr11	22391534	rs2665677	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr11	22397739	rs2248436	A	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr11	22696451	rs922571	A	G	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.724;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.79;ReadPosRankSum=0.459;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:44,49:0.53:93
chr11	22707139	rs3834428	CTG	C	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr11	22747745	rs337448	A	C	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	22851172	rs2286811	C	T	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:65,51:0.44:116
chr11	22851409	rs2286810	A	G	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr11	22880918	rs3213707	T	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-1.309;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:28,25:0.47:53
chr11	24750842	rs7128434	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	24759855	rs1564992	G	A	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.64;ReadPosRankSum=-1.465;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:103,88:0.46:191
chr11	24784862	rs2716532	A	T	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr11	24784922	rs10500990	G	T	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr11	24998252	rs369489744	CAAA	C	946.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=0.000;SOR=0.395;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr11	24998335	rs11028314	A	G	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	25098938	rs7930185	G	C	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	25099056	rs11028403	A	T	601.81	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:4,31:0.89:35
chr11	25100229	rs10500994	G	A	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	26353991	rs56225203	T	TA	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.882;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=10.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=1.227;SOR=3.180;set=HC	GT:AD:AF:DP	0/1:19,24:0.56:43
chr11	26465500	rs4032918	G	A	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr11	26481611	rs2047099	G	A	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	26547348	rs430563	G	A	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.65;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	26547353	rs410617	T	G	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.69;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	26552679	rs9988806	T	A	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	26552696	rs2131696	T	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.938;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr11	26552702	rs293937	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	26553057	rs60373469	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr11	26558841	rs386635	G	A	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	26559172	rs396863	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	26563395	rs11029601	T	C	47.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.832;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=-0.194;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr11	26563464	rs410036	A	T	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr11	26563652	rs420143	T	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	26568966	rs2663168	A	G	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.809;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:125,122:0.49:247
chr11	26574740	rs395770	T	C	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr11	26574782	rs59938249	TG	T	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,45:0.33:135
chr11	26581382	rs375616498	TAC	T	235.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr11	26584625	rs444178	C	A	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	26586801	rs15783	G	A	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	26587133	rs293980	T	C	6708.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr11	26588804	rs293976	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.84;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	26588804	.	CC	TA,TC	211	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=8;HapScore=2;MGOF=5;MMLQ=25;MQ=60.0;NF=8,14;NR=9,20;PP=185,211;QD=14.0275220507;SC=ACTTTTTTTTCCTCAAGCAAT;SbPval=0.37;Source=Platypus;TC=35;TCF=14;TCR=21;TR=17,34;WE=26588813;WS=26588794;set=Platypus	GT:AF:DP	0/1:0.49:35
chr11	26588805	rs10466440	C	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.97;ReadPosRankSum=-0.493;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:18,20:0.53:38
chr11	26621117	rs11604868	A	C	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.140;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:105,90:0.46:195
chr11	26645894	rs1012552	A	T	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	26655627	rs56177338	C	CAA	860.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.91;ReadPosRankSum=0.630;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:3,33:0.92:36
chr11	26663298	rs11603910	T	A	104.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	26669167	rs10501059	A	C	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr11	26677867	rs10835050	T	C	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:113,82:0.42:195
chr11	26677947	rs10835051	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:102,68:0.40:170
chr11	26694812	rs4278475	C	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	26694842	rs4551716	C	T	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	26694903	rs4347341	C	T	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=-0.806;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:162,109:0.40:271
chr11	26694979	rs4369354	A	G	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	26702482	rs10767569	T	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	26702664	rs10734383	C	T	1058.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	26705124	rs3924552	C	G	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	26705310	rs3924551	A	G	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	26734209	rs10742156	C	T	10771.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr11	27077118	rs10767598	C	T	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	27114788	rs3183973	C	T	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:154,126:0.45:280
chr11	27147270	rs1044273	G	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:94,52:0.36:146
chr11	27362359	rs17244028	T	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:73,55:0.43:128
chr11	27390089	rs2447997	T	C	6495.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	27398845	rs10835171	G	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr11	27401743	rs2472623	A	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:42,37:0.47:79
chr11	27401940	rs2472622	T	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr11	27412535	rs12273521	C	T	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	27412782	rs61648905	CTT	C	810.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.85;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr11	27413855	rs1871251	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	27493630	rs200956245	TC	T	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.044;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.733;QD=16.49;ReadPosRankSum=-1.750;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:7,17:0.71:24
chr11	27493879	rs11541599	C	G	329.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr11	27523164	rs151336878	T	TGAAGTTAAAATTTCAGGC	2340.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	27523186	rs10835188	G	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	27679662	rs2353512	T	C	7765.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	27679916	rs6265	C	T	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:185,127:0.41:312
chr11	27695910	rs10835210	C	A	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr11	27910923	rs6484341	T	A	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	28045260	rs33937991	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr11	28057957	rs10458896	T	C	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:57,70:0.55:127
chr11	28104605	rs7937778	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr11	28106058	rs997555	C	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	28113094	.	TA	T	110.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.120;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.822;QD=1.10;ReadPosRankSum=0.760;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chr11	28116352	rs11607351	G	A	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:104,126:0.55:230
chr11	28134974	rs60970073	C	A	74.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr11	28143882	rs9988877	G	A	128.41	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.05;ReadPosRankSum=0.489;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr11	30033191	rs3802914	G	A	2692.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:107,123:0.53:230
chr11	30253318	rs611246	A	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr11	30253641	rs609896	T	C	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr11	30255185	rs6169	C	T	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:100,80:0.44:180
chr11	30352473	rs35824273	C	CAG	913.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr11	30358058	rs139683825	A	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:35,37:0.51:72
chr11	30438948	rs492604	C	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.36;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	30438958	rs11354702	CT	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-0.487;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr11	30601733	rs66528013	CT	C	509.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr11	30900263	rs5790842	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.330;MLEAC=1;MLEAF=0.500;MQ=60.65;MQRankSum=1.123;QD=7.57;ReadPosRankSum=-2.196;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr11	30902893	rs273613	T	C	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:54,54:0.50:108
chr11	30922081	rs273560	C	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	30930393	rs175398	T	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr11	30932782	rs34831460	G	GT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=4.160;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.938;QD=1.13;ReadPosRankSum=1.262;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr11	30953608	rs163877	A	G	122.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr11	30965855	rs273605	A	T	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:120,98:0.45:218
chr11	30974203	rs10767883	T	A	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chr11	31326420	rs2616821	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:17,20:0.54:37
chr11	31327316	rs2616815	C	T	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.80;ReadPosRankSum=-0.215;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:78,82:0.51:160
chr11	31327766	rs2761592	G	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,41:0.54:76
chr11	31458730	rs7479413	T	G	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	31648529	rs2273943	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	31653956	rs4922872	C	A	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr11	31812215	rs3026393	A	C	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.431;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=0.012;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:39,42:0.52:81
chr11	31812582	rs2071754	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	31814879	rs3026384	G	A	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.234;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.861;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.31;ReadPosRankSum=0.908;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:110,73:0.40:183
chr11	31838252	rs5790869	C	CG	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	32113057	rs223045	A	G	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr11	32118665	.	CT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.402;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:83,40:0.33:123
chr11	32118894	rs149734507	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:52,38:0.42:90
chr11	32118925	rs223073	A	G	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	32122003	rs2281411	C	A	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	32122020	rs2073223	T	G	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	32122268	rs223065	C	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	32124685	rs223059	G	A	8065.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr11	32124978	rs4876	T	C	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	32125855	rs223058	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	32125961	rs11529889	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	32451978	rs370524588	CAG	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.727;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,6:0.20:30
chr11	32452001	.	GGAGAGAGA	G	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.450;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=0.000;QD=8.13;ReadPosRankSum=0.347;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,12:0.33:36
chr11	32460624	rs3087923	G	C	1726.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,84:0.65:130
chr11	32605564	rs142331786	C	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:90,100:0.53:190
chr11	32608473	rs201881	G	A	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	32610388	rs201877	A	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	32610726	.	C	CT	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.465;QD=2.59;ReadPosRankSum=-0.495;SOR=0.313;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr11	32610968	rs201876	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	32615352	rs66536432	A	AT	1938.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	32623419	rs77379922	C	T	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr11	32624405	rs201893	C	T	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr11	32657198	rs77157039	A	T	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:52,36:0.41:88
chr11	32657266	rs201854	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	32674627	rs172101	A	G	2578.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	32675419	rs141500528	TTAAC	T	706.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr11	32704946	rs1396995	C	A	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.43;ReadPosRankSum=1.097;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr11	32852039	rs71034622	T	TG	955.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr11	32852172	rs33962176	G	A	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,40:0.44:91
chr11	32861816	rs35984272	C	T	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr11	32874926	rs11032025	G	A	1929.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:89,88:0.50:177
chr11	32949463	rs146740108	A	AT	503.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr11	32954344	rs1022586	G	A	6238.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	32956244	rs7940077	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	32956620	rs7481878	A	G	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:128,104:0.45:232
chr11	32975333	rs7395190	T	G	796.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr11	32975641	rs75682354	G	A	1610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=1.814;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:69,80:0.54:149
chr11	32975807	.	G	T	207.77	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	32977008	rs75423226	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr11	32977028	rs74893802	T	C	275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=2.456;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr11	32990842	rs6416072	G	T	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	33014668	rs7941237	G	A	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.20;ReadPosRankSum=0.743;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:8,11:0.58:19
chr11	33054754	rs2273539	C	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	33076191	rs2273544	T	C	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	33078230	rs77368109	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	33079580	rs2273549	A	G	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	33106616	rs3758741	C	T	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:83,138:0.62:221
chr11	33106908	rs3834432	C	CTTTATAG	916.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr11	33113653	rs7950763	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr11	33113910	rs113144162	A	AT	1025.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.143;QD=9.59;ReadPosRankSum=0.269;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:50,57:0.53:107
chr11	33118274	rs7103953	A	G	225.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr11	33118529	rs11363325	GC	G	874.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr11	33129997	rs11605353	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr11	33183017	rs3736213	A	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:37,44:0.54:81
chr11	33183073	rs3808985	G	A	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr11	33307937	rs34512764	CT	C	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.355;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr11	33360783	rs3847592	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	33360886	rs5790925	AT	A	2617.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	33362723	rs266470	G	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=-1.799;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr11	33370884	rs4756641	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr11	33564123	rs2076623	T	C	5638.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:223,262:0.54:485
chr11	33581153	rs2076627	T	C	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:10,22:0.69:32
chr11	33604885	rs2273117	C	T	381.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr11	33604960	rs2273115	C	T	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr11	33628103	rs2076626	T	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr11	33628117	rs2076625	A	C	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr11	33640104	rs768474	A	C	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:95,94:0.50:189
chr11	33667333	rs1033543	A	G	2824.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:210,152:0.42:362
chr11	33667596	rs1033542	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr11	33719821	rs831611	T	C	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr11	33721175	rs4755893	G	C	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:39,47:0.55:86
chr11	33721261	rs4755894	T	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr11	33722084	rs149234067	G	T	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.83;ReadPosRankSum=-0.185;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr11	33773161	rs7479064	G	C	684.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	33775982	rs2272065	A	G	403.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=1.498;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:27,20:0.43:47
chr11	33778729	rs12224154	T	C	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:36,42:0.54:78
chr11	33796080	rs71480984	C	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr11	33880896	rs3740616	T	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr11	33881016	rs3740617	T	C	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr11	33886294	rs2038602	A	G	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:180,122:0.40:302
chr11	33886547	rs3824848	C	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:80,64:0.44:144
chr11	33891357	rs11032432	G	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.73;ReadPosRankSum=-0.494;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	33902593	rs3740618	C	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr11	33902612	rs3740619	C	A	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr11	34093349	rs10718447	AT	A	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	34098283	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.271;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr11	34107785	rs4755360	G	A	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	34113717	rs2982592	C	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	34149199	rs2957512	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	34152939	rs2957516	T	C	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	34154641	rs2957518	C	T	9880.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	34158411	rs2982615	A	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	34158431	rs2957521	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	34162549	rs79872650	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:35,39:0.53:74
chr11	34163705	rs2982612	T	C	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	34176214	rs2957525	A	G	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	34188981	rs7120870	C	T	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.12;ReadPosRankSum=0.926;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:37,36:0.49:73
chr11	34188981	.	CA	TG	390	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=0;MMLQ=26;MQ=60.0;NF=12;NR=21;PP=390;QD=13.4384204504;SC=GATGGTGAACCAGAGTTAACA;SbPval=0.45;Source=Platypus;TC=68;TCF=23;TCR=45;TR=33;WE=34188990;WS=34188971;set=Platypus	GT:AD:AF:DP	0/1:35,33:0.49:68
chr11	34188982	rs7120749	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.64;SOR=1.852;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	34189564	rs4756111	A	G	8444.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.848;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	34226041	rs2955944	A	G	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	34470679	rs769218	G	A	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr11	34482908	rs769217	C	T	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:108,134:0.55:242
chr11	34502345	rs2231828	T	C	2545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=-0.183;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:172,134:0.44:306
chr11	34511541	rs2231825	C	A	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:87,77:0.47:164
chr11	34514941	rs737254	T	G	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=0.022;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:31,20:0.39:51
chr11	34527152	rs2231821	A	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chr11	34532993	rs11606405	T	C	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:81,76:0.48:157
chr11	34643780	rs286920	A	G	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr11	34643955	rs12789617	G	A	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:115,103:0.47:218
chr11	34673051	rs4987414	AG	A	2891.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:83,76:0.48:159
chr11	34673053	rs201988979	A	T	2900.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:82,76:0.48:158
chr11	34678435	rs435537	C	G	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	34680053	rs3818514	G	A	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.27;ReadPosRankSum=1.023;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:52,47:0.47:99
chr11	34680598	rs11032804	C	A	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr11	34918543	rs76436102	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,22:0.40:55
chr11	34937901	rs2956112	A	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:116,108:0.48:224
chr11	34938001	rs113073242	A	G	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr11	34938079	rs375130125	G	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=-1.159;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:32,4:0.11:36
chr11	34938199	rs3818401	C	G	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr11	34938265	rs2956109	C	T	1971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=2.555;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:59,51:0.46:110
chr11	34938269	rs1049306	C	T	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=2.397;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.41;ReadPosRankSum=2.635;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:61,54:0.47:115
chr11	34938310	rs1049307	T	C	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:68,72:0.51:140
chr11	34938456	rs3818397	A	G	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	34953055	rs12289218	C	A	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.710;QD=3.88;ReadPosRankSum=-3.201;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:74,26:0.26:100
chr11	34963416	rs2986407	T	C	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.61;ReadPosRankSum=0.610;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:25,29:0.54:54
chr11	34963459	rs11032942	T	C	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.56;ReadPosRankSum=-0.319;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,18:0.49:37
chr11	34969271	rs3215780	A	AT	537.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	35161288	rs12365962	G	A	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,10:0.71:14
chr11	35197989	rs148759925	T	C	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr11	35198032	rs4756195	A	G	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr11	35198108	rs4756196	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr11	35201842	rs1071695	C	T	2620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.874;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:120,131:0.52:251
chr11	35223158	rs11033025	T	C	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:70,55:0.44:125
chr11	35226155	rs9666607	A	G	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:153,142:0.48:295
chr11	35229673	rs1467558	T	C	9353.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr11	35244145	.	AAT	A	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.17;ReadPosRankSum=-1.834;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr11	35314173	rs2281634	C	T	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr11	35338902	rs2273686	G	A	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:83,77:0.48:160
chr11	35344345	rs7115450	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,23:0.46:50
chr11	35453796	rs11344760	GC	G	782.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	35456453	rs675227	G	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr11	36031593	rs262404	G	A	2192.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	36057626	rs262451	G	A	7641.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr11	36103228	rs1138807	A	G	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:206,185:0.47:391
chr11	36103381	rs3740962	A	G	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:57,42:0.42:99
chr11	36251046	rs4755444	G	A	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	36293048	rs7107433	G	A	1014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.12;ReadPosRankSum=-1.068;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:72,53:0.42:125
chr11	36298555	rs2289986	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.55;ReadPosRankSum=1.178;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,14:0.52:27
chr11	36311014	rs7939948	G	T	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr11	36397655	.	A	AT	1089.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.807;QD=7.08;ReadPosRankSum=-1.597;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:76,78:0.51:154
chr11	36422792	rs330261	G	A	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	36453506	rs746761	T	C	984.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr11	36459130	rs4756316	T	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr11	36484208	rs514352	T	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	36514290	rs2303439	T	C	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	36518824	rs3830511	T	TA	1689.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,73:0.97:75
chr11	36595902	rs200758244	G	A	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:92,114:0.55:206
chr11	36657633	rs143974880	C	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:18,24:0.57:42
chr11	40137543	rs2953310	T	C	1026.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:111,56:0.34:167
chr11	42209105	rs11416548	G	GA	1132.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:20,67:0.77:87
chr11	42209292	rs901894	T	G	2335.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:140,115:0.45:255
chr11	42259731	rs11036779	G	A	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:160,168:0.51:328
chr11	42262449	rs10837795	G	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr11	43340429	rs2270573	G	C	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	43342887	rs5743220	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,20:0.38:52
chr11	43357037	rs5743253	A	G	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr11	43357057	rs5743254	A	C	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr11	43401008	.	ATG	A	61.73	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,5:0.24:21
chr11	43413157	rs202071795	TTTGCG	T	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=-0.963;QD=0.86;ReadPosRankSum=1.224;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr11	43413158	rs67884453	TTGCG	T	505.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.294;QD=10.11;ReadPosRankSum=0.543;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr11	43418507	rs11406499	C	CA	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.736;QD=3.90;ReadPosRankSum=1.580;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr11	43419451	.	CGTGTGT	C	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.126;QD=22.55;ReadPosRankSum=1.282;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr11	43425855	rs17508921	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr11	43436438	rs72900941	C	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:12,15:0.56:27
chr11	43472693	rs79406295	G	A	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:74,58:0.44:132
chr11	43472746	rs11551137	C	T	2553.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:162,129:0.44:291
chr11	43472895	rs6485426	G	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr11	43515304	rs12276980	C	G	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:44,46:0.51:90
chr11	43702530	rs56168061	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:23,27:0.54:50
chr11	43702581	rs4573669	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr11	43702615	rs4573668	G	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	43775734	rs4643069	A	G	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=4.752;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.57;ReadPosRankSum=0.351;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr11	43776481	rs7115919	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:124,96:0.44:220
chr11	43861748	rs10734518	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr11	43876435	rs3736505	A	G	980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.304;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.87;ReadPosRankSum=-0.216;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:107,60:0.36:167
chr11	43876698	rs11555762	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr11	43905440	rs2271818	C	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	43911365	rs2434478	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	43940566	rs7926534	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	43940644	rs1048928	G	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	43946967	rs1973717	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	43947990	rs12797684	T	C	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	43954812	rs2434476	T	C	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,43:0.96:45
chr11	44080210	rs2074051	T	C	1073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.96;ReadPosRankSum=0.561;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:44,54:0.55:98
chr11	44089161	rs178514	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:87,74:0.46:161
chr11	44089352	rs33952257	G	A	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:61,59:0.49:120
chr11	44096238	rs178521	G	A	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=26.38;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	44096284	.	C	CTCTTTCTTTCTTTCTTTCTTTCTTTCTT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-2.369;QD=6.09;ReadPosRankSum=-1.803;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr11	44096324	.	T	TTC	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=0.614;QD=11.06;ReadPosRankSum=1.320;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr11	44096328	.	C	CTTTCTTTTTCTT	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=0.420;QD=10.06;ReadPosRankSum=0.997;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr11	44096332	rs199575792	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.836;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.10;MQRankSum=0.420;QD=10.75;ReadPosRankSum=-0.796;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr11	44096336	.	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=56.40;MQRankSum=-0.156;QD=12.71;ReadPosRankSum=-1.899;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	44097226	rs178523	A	G	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr11	44098985	rs2074043	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:69,53:0.43:122
chr11	44099588	rs3134907	A	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr11	44104701	rs79395013	C	CCT	4791.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	44104885	rs3107274	T	G	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:76,72:0.49:148
chr11	44104981	rs3107275	C	T	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:139,97:0.41:236
chr11	44117898	rs11037860	T	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	44129086	rs11037864	A	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr11	44146257	rs10769018	A	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	44151457	rs7125352	T	C	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	44151480	rs11037881	G	T	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:79,92:0.54:171
chr11	44151577	rs11037882	T	A	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:161,167:0.51:328
chr11	44255614	rs11037909	T	C	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr11	44257802	rs3740878	T	C	1130.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:105,65:0.38:170
chr11	44286566	rs3802805	G	A	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr11	44289289	rs10742699	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	44289312	rs10769024	C	G	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:30,30:0.50:60
chr11	44297054	rs10769028	T	C	13595.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr11	44297253	rs11037929	A	G	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	44297343	rs11037930	C	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	44331309	rs12421995	G	A	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	44331509	rs3824915	C	G	8297.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr11	44585933	rs934178	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	44608866	rs7930303	T	C	1262.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	44609198	rs7102843	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	44636684	rs12788360	G	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr11	44636839	rs883752	C	T	2151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.763;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=1.772;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:111,107:0.49:218
chr11	44640268	rs1139971	A	G	5827.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	44919495	rs10838380	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	44924950	rs5791652	GC	G	1068.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,33:0.56:59
chr11	44925038	rs11038198	A	G	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.137;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.877;QD=8.14;ReadPosRankSum=-2.148;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:69,55:0.44:124
chr11	44925359	rs11456363	C	CT	4612.73	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:112,150:0.57:262
chr11	44928135	rs2306665	G	A	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr11	44940828	rs2291334	G	A	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	44950784	rs835990	G	A	4382.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	44952285	rs10838390	C	T	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	44959213	rs2279363	C	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	44959924	rs2306666	G	A	5428.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	44968756	rs4755920	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	45203848	rs1078931	G	A	2666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.716;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:111,128:0.54:239
chr11	45204071	rs1078930	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	45230443	rs12226640	T	C	2422.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:116,119:0.51:235
chr11	45230862	rs3781705	C	A	6580.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:3,278:0.99:281
chr11	45233984	rs74816811	G	A	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr11	45234877	rs11038356	T	C	7813.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	45235433	rs3781704	G	C	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr11	45672261	rs3802762	A	G	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	45832845	rs145613857	C	T	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:13,46:0.78:59
chr11	45832935	rs1139266	G	A	256.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	45834044	rs4756027	C	T	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	45834198	rs7943306	T	C	7907.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	45868850	rs11394694	C	CG	8151.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	45877529	rs2292913	A	G	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	45877688	rs2292912	C	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	45883914	rs4755343	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	45891508	rs4755345	A	G	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	45926445	rs2271847	T	C	29675.77	.	AC=2;AF=1.00;AN=2;DB;DP=1163;set=Intersection	GT:AD:AF:DP	1/1:0,1161:1.00:1161
chr11	45932246	rs1533613	G	A	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:26,65:0.71:91
chr11	45935253	rs2271845	C	T	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr11	45935384	rs1132349	A	G	7851.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:1,310:1.00:311
chr11	45936035	rs3802758	G	A	10583.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr11	45937267	rs10742772	C	T	33573.77	.	AC=2;AF=1.00;AN=2;DB;DP=1294;set=Intersection	GT:AD:AF:DP	1/1:2,1288:1.00:1290
chr11	45937306	rs11553094	C	T	19422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=1407;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.86;ReadPosRankSum=0.848;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:487,914:0.65:1401
chr11	45937968	rs3215273	CTA	C	335.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr11	45944985	rs113938769	A	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr11	45944994	rs33927614	G	GC	4282.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	45945969	rs72902492	C	T	2123.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:38,89:0.70:127
chr11	45949201	rs884668	C	T	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:193,95:0.33:288
chr11	45949534	rs939105	C	T	13116.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	45949746	rs11038714	A	C	13085.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:282,597:0.68:879
chr11	45957292	rs35995547	TA	T	356.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.27;ReadPosRankSum=-0.146;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr11	45959669	rs10742773	C	T	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	46105688	rs2932515	G	A	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	46334239	rs2288249	G	A	5186.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:86,219:0.72:305
chr11	46339011	rs35652107	G	A	6386.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:124,287:0.70:411
chr11	46342081	rs67946579	TG	T	6220.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	46342259	rs79068197	A	AG	23957.73	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,671:1.00:671
chr11	46387868	rs1317826	A	G	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:75,113:0.60:188
chr11	46391602	rs12575519	T	G	8312.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:173,356:0.67:529
chr11	46392825	rs10838601	C	G	1704.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:50,73:0.59:123
chr11	46393958	rs7936413	T	C	3004.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:57,128:0.69:185
chr11	46396479	rs2046768	T	C	6575.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:157,297:0.65:454
chr11	46397323	rs3740974	A	C	1887.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:41,86:0.68:127
chr11	46398916	rs34406563	T	C	4070.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:98,189:0.66:287
chr11	46399538	rs2279465	T	C	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr11	46404340	.	GCC	G,GC	1008.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.464;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.913;QD=13.82;ReadPosRankSum=1.352;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:15,30,28:0.41,0.38:73
chr11	46406767	rs2067482	G	A	10335.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:232,466:0.67:698
chr11	46515902	rs3802888	A	G	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr11	46534546	rs3802890	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr11	46567475	rs61882746	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:6,31:0.84:37
chr11	46569434	rs58268270	CA	C	247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.57;ReadPosRankSum=-1.635;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:112,46:0.29:158
chr11	46678462	rs150786219	C	CACACAT	874.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr11	46678478	rs367595606	TAC	T	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=3.807;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=-0.610;QD=1.49;ReadPosRankSum=0.133;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:48,9:0.16:57
chr11	46686260	rs10838610	G	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:89,52:0.37:141
chr11	46693856	.	G	C	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DP=356;ExcessHet=3.0103;FS=2.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=-0.557;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:275,79:0.22:354
chr11	46694313	rs67065551	GTC	G	7662.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	46699494	rs34845803	GA	G	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.273;SOR=0.935;set=HC	GT:AD:AF:DP	0/1:101,37:0.27:138
chr11	46702691	rs4319473	G	A	3872.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:88,176:0.67:264
chr11	46702920	rs4268467	T	C	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr11	46722731	rs4752928	T	C	3816.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	46742426	rs3136435	G	A	6456.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	46750819	rs3136474	T	C	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	46760466	rs3136515	G	T	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	46776697	rs4237546	A	G	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	46783435	rs61884328	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	46802094	rs6485691	C	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	46812227	rs7940578	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	46822686	rs10734549	C	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	46837625	rs59649961	AC	A	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.15;QD=44.69;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	46837631	.	CCA	C	993	.	AC=2;AF=1.00;AN=2;BRF=0.03;FR=1.0000;HP=6;HapScore=1;MGOF=3;MMLQ=28;MQ=61.4;NF=16;NR=5;PP=993;QD=48.4761904762;SC=AACGACCCCCCCATTCCCCCC;SbPval=0.69;Source=Platypus;TC=22;TCF=16;TCR=6;TR=21;WE=46837642;WS=46837621;set=Platypus	GT:AD:AF:DP	1/1:1,21:0.95:22
chr11	46837633	rs58152993	AT	A	1206.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.15;QD=43.10;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	46837634	.	T	A	597	.	AC=2;AF=1.00;AN=2;BRF=0.03;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=28;MQ=61.11;NF=20;NR=6;PP=597;QD=24.2988927903;SC=GACCCCCCCATTCCCCCCAAC;SbPval=0.49;Source=Platypus;TC=28;TCF=22;TCR=6;TR=26;WE=46837642;WS=46837621;set=Platypus	GT:AD:AF:DP	1/1:2,26:0.93:28
chr11	46889607	rs111426027	C	T	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	46889713	rs2306026	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	46890165	rs3816614	C	T	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	46890388	rs2290884	C	G	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	46897995	rs964551	G	T	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	46907827	rs2306027	C	T	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	46911457	rs2306035	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	46911704	rs2306036	C	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	46914583	rs10838631	T	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	46914598	rs10769215	A	G	4644.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.10;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	46916693	rs3751097	C	T	3691.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	46917983	rs898604	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	46969616	rs2867207	T	C	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	47009041	.	G	GT	247.74	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	47188314	rs4752820	T	C	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	47188592	rs3740690	T	C	521.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	47204175	rs2279438	A	T	4675.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	47238522	rs326212	T	C	3111.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	47238665	rs326211	A	G	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	47251199	rs830085	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	47251369	rs11376360	C	CT	209.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.619;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.299;MLEAC=2;MLEAF=1.000;MQ=60.43;MQRankSum=0.514;QD=11.04;ReadPosRankSum=-0.334;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:2,17:0.89:19
chr11	47259668	rs326222	T	C	9301.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	47267408	rs71949967	CGT	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.044;QD=0.64;ReadPosRankSum=-0.161;SOR=0.899;set=HC	GT:AD:AF:DP	0/1:44,7:0.14:51
chr11	47298201	rs2291119	C	T	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	47298360	rs326214	G	A	7962.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	47303275	rs326217	T	C	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=24.91;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	47307332	rs148495681	G	GTCATTA	546.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47331116	rs1017594	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	47359503	rs11323436	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.492;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr11	47361084	rs2856653	T	C	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	47362431	rs2697926	A	G	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	47364762	rs896818	A	G	7105.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	47365199	rs2856650	G	A	4061.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	47371484	rs11570050	AG	A	5875.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr11	47372741	rs138484124	C	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	47380061	rs10734557	A	C	5650.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	47380340	rs3740688	G	T	5686.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	47380593	rs3740689	G	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	47380688	rs35284836	GGAA	G	715.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47431728	rs2010519	A	G	5684.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:2,210:0.99:212
chr11	47432034	rs755554	G	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	47434986	rs2293576	G	A	9406.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	47436531	rs11039228	G	T	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	47440758	rs2293579	G	A	8159.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr11	47447346	rs10838709	C	T	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	47460098	rs10769267	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	47460306	rs7126210	A	G	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	47462837	rs10716680	AG	A	1847.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	47463483	rs34729771	AG	A	1673.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	47469439	rs7111873	A	G	9839.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	47500400	rs12224672	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	47505869	.	C	CA	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=5.801;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.243;SOR=0.246;set=HC	GT:AD:AF:DP	0/1:64,28:0.30:92
chr11	47587577	rs58926533	TC	T	4112.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	47600438	rs2280231	C	T	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	47609867	rs4486587	G	A	9825.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	47611316	rs10769279	C	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	47640337	rs72909879	T	C	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=7.651;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.901;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:92,17:0.16:109
chr11	47640349	rs78476140	G	A	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=2.221;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-1.152;SOR=0.376;set=HC	GT:AD:AF:DP	0/1:116,18:0.13:134
chr11	47640350	rs77215521	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.295;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-1.941;SOR=0.391;set=HC	GT:AD:AF:DP	0/1:116,21:0.15:137
chr11	47640355	rs76999459	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-0.935;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:130,21:0.14:151
chr11	47640367	rs76315325	T	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=0.000;QD=2.50;ReadPosRankSum=-0.794;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:156,24:0.13:180
chr11	47644270	.	A	C	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.385;QD=0.33;ReadPosRankSum=-3.872;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:128,11:0.08:139
chr11	47644271	.	C	T	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=2.751;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.385;QD=0.33;ReadPosRankSum=-3.744;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:128,11:0.08:139
chr11	47644274	.	A	G	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=2.733;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.398;QD=0.33;ReadPosRankSum=-3.446;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:129,11:0.08:140
chr11	47644277	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=2.713;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.411;QD=0.30;ReadPosRankSum=-3.022;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:130,11:0.08:141
chr11	47652476	rs117523937	A	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	47684450	rs6485766	C	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	47689343	rs10742817	C	T	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	47712213	rs7941404	C	T	6386.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	47736314	rs4752863	C	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	47755552	.	CA	C	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.85;ReadPosRankSum=0.854;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:39,23:0.37:62
chr11	47772401	rs11039366	C	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	47774366	rs151189779	A	AAAAC	902.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.746;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.04;ReadPosRankSum=1.592;SOR=0.473;set=HC	GT:AD:AF:DP	1/1:1,21:0.95:22
chr11	47775952	rs11039369	A	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	47776047	rs7928954	G	A	5386.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	47776283	rs7929014	C	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	47786926	rs148666719	A	AAAAAG	1061.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.92;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr11	47788663	rs67450550	CGGTGGT	C	1337.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	47801101	rs7114813	A	G	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	47802092	rs200363262	CTT	C	787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.500;MQ=60.52;MQRankSum=0.424;QD=21.29;ReadPosRankSum=-0.838;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:5,32:0.86:37
chr11	47806655	.	TAATAGCTA	T	652.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.698;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.67;ReadPosRankSum=1.025;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr11	47806666	.	TAGAGTACCA	T	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.856;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.26;ReadPosRankSum=-2.453;SOR=3.500;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr11	47806677	.	TCAAAGCATGTA	T	613.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=-2.418;SOR=3.086;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr11	47813436	rs10742821	C	T	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	47814280	rs754434	A	G	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	47826090	rs11039402	A	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	47834346	rs10838773	G	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	47834592	rs7110289	G	A	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	47837408	rs6485786	G	C	4657.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	47837638	rs7130715	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	47857253	rs3816605	T	C	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	47869200	rs71045524	TG	T	417.50	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.87;ReadPosRankSum=-0.207;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr11	48118199	rs4752806	G	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	48118347	rs11382316	T	TA	4225.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	48142528	.	ATT	A,AT	1184.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=1.423;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.37;MQRankSum=0.653;QD=13.62;ReadPosRankSum=-1.744;SOR=1.218;set=HC	GT:AD:AF:DP	1/2:10,25,52:0.29,0.60:87
chr11	48145247	rs2270992	T	C	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	48157869	rs2270994	T	C	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	48166267	rs4752904	G	C	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	48170870	rs4752908	T	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	48171793	rs10734565	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	48184971	rs3830431	CCTTT	C	13212.73	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	48184983	rs2270990	G	T	13897.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	48186110	.	ATT	A	415.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;ClippingRankSum=-0.000;DP=69;ExcessHet=3.0103;FS=9.622;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.80;ReadPosRankSum=1.393;SOR=1.977;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr11	48238302	rs1566737	G	T	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	48238421	rs10769329	T	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	48266582	rs7120549	A	C	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr11	48267589	rs1503180	A	G	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	48285301	rs713325	A	G	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	48285842	rs1503193	A	G	8831.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr11	48285856	rs10838850	C	T	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	48285981	rs76884411	CCTT	C	17176.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr11	48286231	rs10838851	T	A	5942.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	48286256	rs10838852	C	T	4950.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	48346450	rs79776366	A	G	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.009;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=2.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-1.134;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:27,14:0.34:41
chr11	48346458	rs77295176	A	G	518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.297;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=7.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.59;ReadPosRankSum=-0.518;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr11	48346487	rs33950768	TC	T	1089.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,28:0.33:86
chr11	48346513	rs78206553	T	C	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.666;QD=11.23;ReadPosRankSum=1.399;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:95,41:0.30:136
chr11	48346523	rs72911451	C	T	1836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.842;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.198;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.497;QD=11.63;ReadPosRankSum=0.057;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:106,52:0.33:158
chr11	48346535	rs76964780	G	C	2264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.980;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.519;QD=12.05;ReadPosRankSum=-0.010;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:127,61:0.32:188
chr11	48346541	rs75498992	A	T	2231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.553;QD=11.10;ReadPosRankSum=0.134;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:137,64:0.32:201
chr11	48346547	rs79042268	C	T	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.586;QD=11.14;ReadPosRankSum=0.364;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:145,66:0.31:211
chr11	48346551	rs77470587	C	A	2386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.519;QD=11.05;ReadPosRankSum=-0.235;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:146,70:0.32:216
chr11	48346579	rs72911452	C	A	2995.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.622;QD=10.66;ReadPosRankSum=1.117;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:195,86:0.31:281
chr11	48346588	rs75900655	A	C	3184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.462;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.661;QD=10.72;ReadPosRankSum=1.901;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:208,89:0.30:297
chr11	48346604	rs75647397	T	G	3260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.690;QD=10.13;ReadPosRankSum=2.200;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:227,95:0.30:322
chr11	48346615	rs73463988	G	A	3361.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:228,103:0.31:331
chr11	48346660	rs138704181	TTTGCTGATC	T	4184.73	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:242,120:0.33:362
chr11	48346681	rs78490540	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:234,126:0.35:360
chr11	48346729	rs73463990	G	C	3021.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:241,156:0.39:397
chr11	48346791	rs73463994	C	T	3944.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:287,202:0.41:489
chr11	48346822	rs73463997	A	C	4122.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:312,218:0.41:530
chr11	48346843	rs73463998	C	T	4132.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:298,214:0.42:512
chr11	48346916	rs77069283	G	C	6101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=1.779;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:269,169:0.39:438
chr11	48346924	rs72911454	T	C	6473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=0.683;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:264,172:0.39:436
chr11	48346932	rs80285195	G	A	6269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-0.522;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:257,172:0.40:429
chr11	48346961	rs75493089	AA	TG	6058.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;JOINED;set=Intersection	GT:AD:AF:DP	0/1:268,167:0.38:435
chr11	48346999	rs72473367	T	G	4653.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:258,179:0.41:437
chr11	48347014	rs72473368	G	A	7323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.20;ReadPosRankSum=0.237;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:261,191:0.42:452
chr11	48347023	rs67077733	C	T	6976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.33;ReadPosRankSum=0.992;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:265,190:0.42:455
chr11	48347067	rs73464001	C	T	4041.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:268,202:0.43:470
chr11	48347100	rs73465905	C	T	3259.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:280,166:0.37:446
chr11	48347124	rs79019124	A	G	5598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.987;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=-0.078;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:293,158:0.35:451
chr11	48347130	rs77395846	C	G	5669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.554;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=0.153;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:296,151:0.34:447
chr11	48347140	rs10838874	T	C	5945.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.440;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-2.561;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:280,159:0.36:439
chr11	48347142	rs79891698	C	T	5808.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.011;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-2.244;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:279,157:0.36:436
chr11	48347144	rs79124801	T	C	5736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.368;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=-2.795;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:273,157:0.37:430
chr11	48347267	rs73465910	T	C	3246.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:222,171:0.44:393
chr11	48347306	rs73465911	G	T	3196.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:236,163:0.41:399
chr11	48347342	rs76958755	G	A	4257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.134;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-1.759;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:200,123:0.38:323
chr11	48347346	rs74590631	A	T	4130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=1.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.77;ReadPosRankSum=-1.241;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:191,109:0.36:300
chr11	48347358	rs76274696	C	T	3136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.75;ReadPosRankSum=-0.668;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:178,89:0.33:267
chr11	48347363	rs77814753	C	T	3049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=-1.341;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:168,87:0.34:255
chr11	48347392	rs79127479	T	C	1124.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:143,70:0.33:213
chr11	48347419	rs73465913	A	G	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:109,54:0.33:163
chr11	48347492	rs79775762	G	A	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=-0.440;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:47,32:0.41:79
chr11	48347498	rs78309417	A	T	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.95;ReadPosRankSum=-0.312;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:42,28:0.40:70
chr11	48347539	rs79172951	G	A	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr11	48347563	rs68062129	CT	C	200.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr11	48347583	rs78209927	G	A	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr11	48347604	rs76365983	A	T	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=-1.981;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr11	48349128	rs76530627	G	A	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.028;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=9.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=0.231;SOR=3.426;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr11	48349128	.	GTA	ATG	422	.	AC=1;AF=0.500;AN=2;BRF=0.03;FR=0.5000;HP=3;HapScore=2;MGOF=34;MMLQ=28;MQ=60.0;NF=9;NR=0;PP=422;QD=52.8297638736;SC=TGTCTTTAAAGTAAAAGTAAA;SbPval=1.0;Source=Platypus;TC=26;TCF=22;TCR=4;TR=9;WE=48349138;WS=48349118;set=Platypus	GT:AD:AF:DP	1/0:17,9:0.35:26
chr11	48349130	rs75661263	A	G	421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.309;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=12.454;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.961;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr11	48349152	rs73465924	A	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:27,17:0.39:44
chr11	48349171	rs73465926	T	C	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:38,23:0.38:61
chr11	48349209	rs73465927	A	C	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=-0.297;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:62,37:0.37:99
chr11	48349230	rs74884553	G	A	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=1.285;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:76,40:0.34:116
chr11	48349235	rs10769662	C	T	1467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.504;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=1.406;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:80,42:0.34:122
chr11	48349252	rs76041098	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:90,42:0.32:132
chr11	48349312	rs79572913	A	G	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=9.173;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.398;SOR=1.526;set=HC	GT:AD:AF:DP	0/1:74,43:0.37:117
chr11	48349316	rs76607933	T	A	1537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.119;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=7.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=0.948;SOR=1.458;set=HC	GT:AD:AF:DP	0/1:71,41:0.37:112
chr11	48349320	rs77184441	A	T	1443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.49;ReadPosRankSum=0.429;SOR=1.401;set=HC	GT:AD:AF:DP	0/1:67,40:0.37:107
chr11	48349329	rs76765071	C	A	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=5.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.48;ReadPosRankSum=0.058;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:64,38:0.37:102
chr11	48349377	rs72911466	A	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:38,19:0.33:57
chr11	48349389	rs79223613	A	C	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.626;QD=10.12;ReadPosRankSum=-0.233;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:35,14:0.29:49
chr11	48349391	rs76599777	TG	CA	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.433;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=2.729;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.031;QD=9.92;ReadPosRankSum=-0.553;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr11	48349394	rs78755709	G	A	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.295;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.032;QD=10.33;ReadPosRankSum=-0.840;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr11	48349407	rs72911467	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr11	48349425	rs79941850	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr11	48366895	rs72473369	A	C	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:41,34:0.45:75
chr11	48366958	rs76319939	T	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:128,78:0.38:206
chr11	48366971	rs75689989	GG	CA	3418.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;JOINED;set=Intersection	GT:AD:AF:DP	0/1:162,93:0.36:255
chr11	48367050	rs113897236	T	TAG	6159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.894;QD=12.86;ReadPosRankSum=2.378;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:307,172:0.36:479
chr11	48367073	rs7941588	A	C	18264.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	48367097	rs73453179	A	G	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:385,206:0.35:591
chr11	48367133	rs79453749	C	A	6007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.721;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.506;QD=11.40;ReadPosRankSum=-0.030;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:356,171:0.32:527
chr11	48367136	rs78927905	C	T	6047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.282;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.521;QD=11.45;ReadPosRankSum=0.349;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:358,170:0.32:528
chr11	48367155	rs75315666	T	A	5391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.476;QD=11.28;ReadPosRankSum=1.888;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:327,151:0.32:478
chr11	48367159	rs75667244	C	T	5306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.483;QD=11.10;ReadPosRankSum=2.125;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:328,150:0.31:478
chr11	48367163	rs74650698	A	G	5333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.872;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.497;QD=11.40;ReadPosRankSum=2.488;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:323,145:0.31:468
chr11	48367170	rs77876442	G	A	4906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.097;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.511;QD=10.88;ReadPosRankSum=2.886;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:313,138:0.31:451
chr11	48367190	rs78661795	A	T	4877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.940;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.480;QD=11.29;ReadPosRankSum=1.952;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:296,136:0.31:432
chr11	48367195	rs79063955	C	T	4777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.432;QD=11.40;ReadPosRankSum=0.707;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:281,138:0.33:419
chr11	48367249	rs74815769	C	T	5413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.37;ReadPosRankSum=-1.281;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:256,149:0.37:405
chr11	48367252	rs76287086	G	A	5383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=2.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.36;ReadPosRankSum=-0.868;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:255,148:0.37:403
chr11	48367311	rs73453180	T	C	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:242,135:0.36:377
chr11	48367363	rs73453183	C	T	2711.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:230,121:0.34:351
chr11	48367387	rs78788561	C	T	2361.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:220,105:0.32:325
chr11	48367419	rs77576379	G	A	3024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.678;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.92;ReadPosRankSum=-0.953;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:189,88:0.32:277
chr11	48367424	rs77976451	C	G	2963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.40;ReadPosRankSum=-1.495;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:176,84:0.32:260
chr11	48367455	rs79175163	G	A	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.758;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.867;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:151,61:0.29:212
chr11	48367469	rs79686513	TG	CA	1748.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.970;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.343;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=1.572;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:130,51:0.28:181
chr11	48367474	rs75116918	A	G	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.315;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.05;ReadPosRankSum=1.591;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:118,47:0.28:165
chr11	48367499	rs72896822	A	G	1138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.144;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=1.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.49;ReadPosRankSum=2.153;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:87,33:0.28:120
chr11	48367511	rs72896823	T	G	1078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.012;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=0.507;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:65,27:0.29:92
chr11	48367528	.	G	GAAGAGCTGAGTCATGCAGCCATTGAAGGATATGGTGTT	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.907;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.21;ReadPosRankSum=-3.715;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:45,17:0.27:62
chr11	48373632	rs4882248	T	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	48373748	rs73453188	C	G	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.645;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=6.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=-1.774;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:122,46:0.27:168
chr11	48373770	rs73453191	T	A	1950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=5.090;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.41;ReadPosRankSum=0.058;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:164,68:0.29:232
chr11	48373797	rs72896825	C	T	3786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=3.350;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.88;ReadPosRankSum=-0.946;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:190,104:0.35:294
chr11	48373805	rs75618010	G	A	3994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=-0.944;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:192,110:0.36:302
chr11	48373815	rs74350365	A	G	4075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=0.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=0.368;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:201,109:0.35:310
chr11	48373817	rs75951679	C	T	3913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=0.879;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:206,109:0.35:315
chr11	48373820	rs3898634	A	C	4063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=1.224;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:208,109:0.34:317
chr11	48373827	rs80081241	G	A	4287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.601;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=1.657;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:220,115:0.34:335
chr11	48373833	rs75965588	GA	AG	4488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=2.386;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:229,125:0.35:354
chr11	48373885	rs76292854	A	G	3199.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:234,164:0.41:398
chr11	48373900	rs77877396	A	G	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:218,158:0.42:376
chr11	48373936	rs76304554	A	G	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.251;QD=8.28;ReadPosRankSum=-1.132;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:179,143:0.44:322
chr11	48373976	rs80225178	T	G	2791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.377;QD=14.10;ReadPosRankSum=-1.070;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:115,83:0.42:198
chr11	48373986	rs12420054	A	G	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.559;QD=14.82;ReadPosRankSum=0.200;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:104,65:0.38:169
chr11	48374000	rs112772888	C	CT	914.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:78,48:0.38:126
chr11	48374031	rs72896827	G	A	949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.44;ReadPosRankSum=-0.549;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:61,30:0.33:91
chr11	48374041	rs72896828	T	C	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.105;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-0.785;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:49,24:0.33:73
chr11	48386956	.	C	CA	549.73	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr11	48387098	rs77594589	A	C	4751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.73;ReadPosRankSum=-0.397;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:140,128:0.48:268
chr11	48387107	rs77606603	T	C	4840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.93;ReadPosRankSum=0.081;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:146,124:0.46:270
chr11	48387115	rs75003399	G	A	4910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.92;ReadPosRankSum=-0.621;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:147,127:0.46:274
chr11	48387118	rs79339252	G	A	4853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=3.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.11;ReadPosRankSum=-0.841;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:144,124:0.46:268
chr11	48387154	rs72473370	AT	GC	3979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.199;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=11.291;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=0.273;SOR=1.080;set=HC	GT:AD:AF:DP	0/1:147,106:0.42:253
chr11	48387164	rs72473371	G	A	3725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=8.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.21;ReadPosRankSum=0.713;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:145,100:0.41:245
chr11	48387186	rs1994140	A	G	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:83,143:0.63:226
chr11	48387201	rs77053100	G	A	2615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=7.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=2.315;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:143,74:0.34:217
chr11	48387206	rs76817095	T	C	2606.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=7.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.96;ReadPosRankSum=2.174;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:146,72:0.33:218
chr11	48387210	rs78428763	CC	TG	2453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=5.150;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=1.446;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:140,70:0.33:210
chr11	48387237	rs72898877	C	T	1852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.004;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-2.233;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:147,63:0.30:210
chr11	48387254	rs75441735	A	G	1684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.962;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-3.040;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:138,50:0.27:188
chr11	48387258	rs78030134	C	T	1588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-3.461;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:134,49:0.27:183
chr11	48387262	rs75430864	G	A	1687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.163;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=-3.033;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:140,48:0.26:188
chr11	48387278	rs139139147	C	CACTGTCCTTCTGT	1562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.396;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=5.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=-2.032;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:147,45:0.23:192
chr11	48387285	.	A	AGTCTTTAGTAG	1677.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.215;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=24.413;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=1.123;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:152,40:0.21:192
chr11	48387301	rs76220342	G	A	1787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.986;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=9.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.77;ReadPosRankSum=-1.903;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:163,67:0.29:230
chr11	48387335	rs73460769	C	A	1835.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:187,97:0.34:284
chr11	48387370	rs73460772	A	G	2740.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:179,141:0.44:320
chr11	48387424	rs61917478	G	T	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:205,168:0.45:373
chr11	48387490	rs77144540	G	A	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:271,207:0.43:478
chr11	48387506	rs72898882	A	G	5090.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:289,200:0.41:489
chr11	48387526	rs78378263	G	T	6073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.997;ClippingRankSum=0.000;DB;DP=464;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-1.226;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:288,175:0.38:463
chr11	48387535	rs72898883	T	C	6013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.588;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=2.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=-1.701;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:280,159:0.36:439
chr11	48387540	rs72898885	G	T	5771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=1.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.12;ReadPosRankSum=-1.626;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:285,155:0.35:440
chr11	48387580	rs78299098	G	T	4434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.600;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.107;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:290,126:0.30:416
chr11	48387582	rs75027745	C	T	4494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.78;ReadPosRankSum=0.089;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:292,125:0.30:417
chr11	48387584	rs75821991	A	T	4380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.294;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.41;ReadPosRankSum=0.391;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:296,125:0.30:421
chr11	48387591	rs75297075	A	G	4322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.15;ReadPosRankSum=1.157;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:303,123:0.29:426
chr11	48387604	rs72898886	C	T	4342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.947;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.742;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:326,133:0.29:459
chr11	48387630	rs73460777	C	T	4362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.001;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=0.861;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:324,133:0.29:457
chr11	48387647	rs75615667	A	G	4675.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:319,144:0.31:463
chr11	48387679	rs76209049	A	G	4761.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:284,137:0.33:421
chr11	48387683	rs67755516	GT	G	4782.73	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:281,137:0.33:418
chr11	48387689	rs75371569	T	C	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:266,132:0.33:398
chr11	48387705	rs34926479	C	T	4431.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:261,131:0.33:392
chr11	48387737	rs73460780	G	C	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:250,150:0.38:400
chr11	48387757	rs74557904	A	C	4784.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:240,154:0.39:394
chr11	48387780	rs76329018	C	T	5986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.46;ReadPosRankSum=-0.297;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:246,168:0.41:414
chr11	48387789	rs80222485	C	G	6129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.088;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:251,167:0.40:418
chr11	48387825	rs75650204	T	G	7032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=0.000;DB;DP=471;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.03;ReadPosRankSum=-0.604;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:278,190:0.41:468
chr11	48387833	rs79515387	T	C	6908.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=0.727;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:289,186:0.39:475
chr11	48387850	rs73460781	G	T	6155.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:300,185:0.38:485
chr11	48387890	rs74623688	T	C	6121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.01;ReadPosRankSum=-0.930;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:272,165:0.38:437
chr11	48387894	rs75065468	C	T	6198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-1.069;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:275,166:0.38:441
chr11	48387900	rs74338058	G	A	6054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.156;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:279,157:0.36:436
chr11	48387917	rs66829866	AT	A	5005.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:254,137:0.35:391
chr11	48387919	rs114441034	G	A	5014.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:255,136:0.35:391
chr11	48387930	rs75939575	T	C	4651.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:246,126:0.34:372
chr11	48387945	rs139770813	C	CCA	3856.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:199,107:0.35:306
chr11	48387946	rs114053360	G	T	3865.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=3.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=2.048;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:199,100:0.33:299
chr11	48387960	rs79688019	T	C	3164.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:175,91:0.34:266
chr11	48387978	rs78160589	T	A	2909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.29;ReadPosRankSum=0.509;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:140,79:0.36:219
chr11	48387983	rs75819836	T	C	2869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.67;ReadPosRankSum=0.313;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:133,77:0.37:210
chr11	48388047	rs75982328	T	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=8.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.11;ReadPosRankSum=0.146;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr11	48388047	.	TTA	CTG	639	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=1;MGOF=35;MMLQ=28;MQ=60.0;NF=6;NR=10;PP=639;QD=43.2792421789;SC=TTGGTCAGGATTATTTTCTGT;SbPval=0.21;Source=Platypus;TC=56;TCF=14;TCR=42;TR=16;WE=48388057;WS=48388037;set=Platypus	GT:AD:AF:DP	1/0:40,16:0.29:56
chr11	48388049	rs77697332	A	G	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=8.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=0.419;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr11	48388067	rs73460782	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr11	48388094	.	C	CTT	1614	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=4;MGOF=80;MMLQ=28;MQ=60.0;NF=5;NR=8;PP=1614;QD=127.461538462;SC=AAACCCAAGACTAAGTTGAGC;SbPval=0.1;Source=Platypus;TC=31;TCF=6;TCR=25;TR=13;WE=48388123;WS=48388084;set=Platypus	GT:AD:AF:DP	0/1:18,13:0.42:31
chr11	48388487	rs78414756	C	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr11	48388524	rs76789954	C	T	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.537;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:36,24:0.40:60
chr11	48388524	.	CAA	TAG	834	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=2;HapScore=1;MGOF=70;MMLQ=28;MQ=59.95;NF=18;NR=3;PP=834;QD=42.2603749934;SC=ATTTCAGAATCAACTGAACTG;SbPval=0.51;Source=Platypus;TC=62;TCF=54;TCR=8;TR=21;WE=48388534;WS=48388514;set=Platypus	GT:AD:AF:DP	0/1:41,21:0.34:62
chr11	48388526	rs77473022	A	G	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.150;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=0.496;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr11	48388542	rs77282201	G	A	1335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.193;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.49;ReadPosRankSum=1.322;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:48,33:0.41:81
chr11	48388544	rs74346885	T	C	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.57;ReadPosRankSum=0.805;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:49,36:0.42:85
chr11	48388553	rs80082776	C	G	1875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=1.244;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:62,45:0.42:107
chr11	48388563	rs77148147	CT	AG	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.964;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:75,55:0.42:130
chr11	48388567	rs79767657	A	C	2157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.87;ReadPosRankSum=1.327;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:80,56:0.41:136
chr11	48388571	rs79079495	C	T	2458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.978;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=0.982;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:91,64:0.41:155
chr11	48388583	rs77992774	A	T	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:115,74:0.39:189
chr11	48388610	rs79108820	T	G	3008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=2.632;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:169,84:0.33:253
chr11	48388612	rs76366705	T	C	2993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.741;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.79;ReadPosRankSum=2.564;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:170,84:0.33:254
chr11	48388614	rs146852809	T	C	3037.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=3.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=2.739;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:175,84:0.32:259
chr11	48388621	rs75849499	ACA	GTC	3004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.479;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=2.638;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:196,87:0.31:283
chr11	48388641	rs80267937	G	A	3867.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:249,111:0.31:360
chr11	48388657	rs80000751	G	A	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:280,128:0.31:408
chr11	48388681	rs76712816	G	A	4904.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:308,136:0.31:444
chr11	48388698	rs77483743	C	T	4827.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:268,132:0.33:400
chr11	48388717	rs78132200	T	C	4128.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:241,120:0.33:361
chr11	48388782	rs76039310	A	G	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr11	48388833	rs73460789	A	C	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr11	48453787	rs4882063	G	A	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:11,208:0.95:219
chr11	48510654	rs7103557	A	C	8163.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr11	48510777	rs7103992	G	A	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	48997592	rs1813231	C	T	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	49000423	rs1965370	C	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	49000522	rs1963629	C	T	7920.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	49002343	rs9783302	T	G	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	49056627	rs60632912	C	CT	989.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=1.695;QD=9.70;ReadPosRankSum=-1.277;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:30,72:0.71:102
chr11	49059362	rs2696914	C	A	7287.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	49075605	rs2851535	G	A	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	49076963	rs34650085	C	CAA	2408.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.307;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.347;QD=24.09;ReadPosRankSum=0.594;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:6,94:0.94:100
chr11	49077012	rs2773242	C	T	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	49077889	rs36015501	AT	A	2686.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	49080616	rs60452246	T	C	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	49080677	rs34947092	T	TA	848.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=12.30;ReadPosRankSum=1.010;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:15,54:0.78:69
chr11	49138552	rs11040259	C	A	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	49170334	rs202694	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	49176057	rs2988340	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.02;QD=28.37;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	49192667	rs10839236	C	T	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	49192905	rs34828796	GA	G	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.760;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.812;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=0.592;QD=9.43;ReadPosRankSum=2.438;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:19,48:0.72:67
chr11	49195090	rs202718	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.14;QD=25.93;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	49195127	rs146564769	C	CA	296.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.000;QD=9.27;ReadPosRankSum=1.404;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr11	49195129	rs67031328	G	A	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=33.80;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	49196332	rs4929893	CG	TC	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	49196652	rs202715	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	49329552	rs1164670	G	A	6742.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	49356400	rs34397343	GT	G	155.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.224;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.671;QD=10.39;ReadPosRankSum=0.000;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr11	49372872	rs3915110	G	A	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	49400965	rs3974576	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.29;QD=26.02;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	49401125	rs7102702	T	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	49454956	rs59892235	CT	C	311.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=9.328;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=0.589;QD=10.06;ReadPosRankSum=1.281;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:4,27:0.87:31
chr11	49597799	rs7131345	C	T	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	49598178	rs7101761	G	A	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	49598207	rs3750925	T	C	12009.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.19;QD=44.98;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	49598207	.	TCT	CCC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=14;MMLQ=23;MQ=55.76;NF=134;NR=107;PP=2947;QD=20;SC=TCCTCTTCCTTCTGCTCCAAG;SbPval=0.56;Source=Platypus;TC=249;TCF=138;TCR=111;TR=241;WE=49598217;WS=49598197;set=Platypus	GT:AD:AF:DP	1/1:8,241:0.97:249
chr11	49598209	rs7939515	T	C	12009.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.00;QD=44.81;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	49637416	rs7125677	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	49655814	rs144145381	T	C	202.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.64;MQRankSum=0.398;QD=18.43;ReadPosRankSum=-2.362;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	49729299	rs67084465	AC	A	4904.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr11	49813442	rs7943083	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	49813497	.	CTTT	C,CTT	516.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.088;QD=14.76;ReadPosRankSum=-1.121;SOR=1.352;set=HC	GT:AD:AF:DP	1/2:2,11,22:0.31,0.63:35
chr11	49813637	rs11530434	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	49829193	rs35198519	AT	A	4365.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	49974371	rs28662375	G	A	8799.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	50003191	rs4598671	C	A	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=26.36;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	51516000	rs11246607	C	T	5955.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	51516036	rs11246608	G	A	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	51516144	rs11246609	A	G	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	55111238	rs11229158	C	A	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	55111584	rs10896659	A	T	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	55135812	rs199792741	C	T	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=25.82;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	55322539	rs12790125	G	A	8868.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr11	55339462	rs71488974	G	A	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	55339676	rs12800642	G	T	7010.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr11	55339702	rs34100491	C	T	6759.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	55339829	rs557590	A	G	13000.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr11	55340379	rs559449	T	C	11426.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr11	55371807	rs11230346	A	T	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	55406746	rs140324531	C	T	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	55541098	rs297118	G	A	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	55563776	rs297054	T	G	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	55587117	rs297082	T	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	55587511	rs297081	A	G	8459.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	55606208	rs12361036	G	A	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	55656483	rs7483200	T	A	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	55681336	rs11231529	G	A	4238.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	55681494	rs2457239	G	A	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	55682111	rs2940752	T	G	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	55703981	rs35841857	T	TA	462.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	55734972	rs11231705	A	T	355.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	55746891	rs7481466	G	A	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	55761221	rs2449134	C	T	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	55761738	rs2128152	T	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	55762060	rs71490418	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	55762167	rs34270187	CA	C	201.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.000;QD=7.76;ReadPosRankSum=0.998;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr11	55798152	rs1482011	G	A	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	55860780	rs1842700	G	A	6148.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	55872876	rs2512961	C	T	9543.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr11	55873024	rs2449148	A	G	16102.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr11	55873368	rs1842696	G	A	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	55889790	rs2035408	G	T	2565.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	55890257	rs1842691	C	T	9759.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	56000403	rs10791893	C	G	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	56127746	rs7942390	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	56128081	rs10896290	A	G	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	56128524	rs7928704	C	T	7969.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	56143125	rs74467122	C	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-3.936;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:222,32:0.13:254
chr11	56143156	rs11228165	C	T	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.219;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.101;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:231,50:0.18:281
chr11	56143158	rs11228166	A	G	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.314;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:234,50:0.18:284
chr11	56143198	rs80034856	C	T	2910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.292;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=6.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.07;ReadPosRankSum=-2.576;SOR=1.069;set=HC	GT:AD:AF:DP	0/1:236,85:0.26:321
chr11	56143204	rs79445223	C	T	3397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=5.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-2.550;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:240,91:0.27:331
chr11	56143207	rs75547926	C	T	3477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.891;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=5.609;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.29;ReadPosRankSum=-2.909;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:241,97:0.29:338
chr11	56143216	rs76044076	G	A	3927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=7.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=-3.087;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:243,111:0.31:354
chr11	56143225	rs77854836	CT	TC	4045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=11.433;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.166;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:253,115:0.31:368
chr11	56143250	rs76390346	G	A	5017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=8.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.64;ReadPosRankSum=0.873;SOR=0.930;set=HC	GT:AD:AF:DP	0/1:257,140:0.35:397
chr11	56143252	rs75101573	G	A	5053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.366;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=6.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=1.691;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:259,138:0.35:397
chr11	56143255	.	T	TGA	5181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.106;ClippingRankSum=0.000;DP=399;ExcessHet=3.0103;FS=9.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=2.120;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:259,139:0.35:398
chr11	56143257	rs77515824	C	A	5197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=11.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=1.910;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:254,143:0.36:397
chr11	56143259	.	AGT	A	5197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.454;ClippingRankSum=0.000;DP=404;ExcessHet=3.0103;FS=5.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.90;ReadPosRankSum=2.304;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:259,144:0.36:403
chr11	56143357	rs76949582	G	A	4015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=4.877;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.253;QD=14.24;ReadPosRankSum=0.794;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:173,109:0.39:282
chr11	56143360	rs79469149	C	T	4219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=6.562;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.266;QD=14.91;ReadPosRankSum=0.635;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:175,108:0.38:283
chr11	56143370	rs77605888	GT	AG	4066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.648;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=19.963;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.323;QD=15.29;ReadPosRankSum=0.469;SOR=1.585;set=HC	GT:AD:AF:DP	0/1:170,96:0.36:266
chr11	56143375	rs75240955	A	T	3529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.419;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=15.500;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.295;QD=13.63;ReadPosRankSum=-0.434;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:163,96:0.37:259
chr11	56143378	rs80298942	C	G	3613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=14.055;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.287;QD=14.06;ReadPosRankSum=-0.868;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:161,96:0.37:257
chr11	56143381	rs78405432	TG	CA	3613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.413;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=14.060;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.299;QD=13.90;ReadPosRankSum=-0.878;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:164,96:0.37:260
chr11	56143394	rs74667177	A	G	3213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.852;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=9.142;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.371;QD=12.04;ReadPosRankSum=-0.773;SOR=1.045;set=HC	GT:AD:AF:DP	0/1:175,92:0.34:267
chr11	56143399	rs75482598	AC	GT	3267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.448;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=3.601;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.406;QD=12.24;ReadPosRankSum=-0.658;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:178,89:0.33:267
chr11	56143402	rs77968220	G	A	3259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.299;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=5.171;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.398;QD=12.16;ReadPosRankSum=-1.106;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:178,90:0.34:268
chr11	56143408	rs79327545	C	T	3286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.185;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=4.289;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.441;QD=11.66;ReadPosRankSum=-0.918;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:191,91:0.32:282
chr11	56143411	rs77484944	T	C	3232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.744;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=3.518;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.449;QD=11.38;ReadPosRankSum=-1.203;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:193,91:0.32:284
chr11	56143414	rs74329097	CA	GG	3178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.888;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=2.807;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.492;QD=11.00;ReadPosRankSum=-0.785;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:200,89:0.31:289
chr11	56143424	.	A	ACGGC	3001.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.789;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.574;QD=9.97;ReadPosRankSum=-0.592;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:215,86:0.29:301
chr11	56143425	.	TATCA	T	2983.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.796;ClippingRankSum=0.000;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.607;QD=9.85;ReadPosRankSum=-0.350;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:219,84:0.28:303
chr11	56143432	rs78396581	A	G	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.151;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.627;QD=9.28;ReadPosRankSum=-0.364;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:219,82:0.27:301
chr11	56143434	rs10791961	C	G	9967.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	56143489	rs74711788	AT	GA	4758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.392;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=1.259;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-3.181;QD=9.73;ReadPosRankSum=0.365;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:350,139:0.28:489
chr11	56143501	rs12272237	T	G	5101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.057;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-3.186;QD=9.77;ReadPosRankSum=-0.572;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:374,148:0.28:522
chr11	56143508	rs10791962	A	T	5404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-3.206;QD=9.86;ReadPosRankSum=-0.458;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:394,154:0.28:548
chr11	56143510	rs10791963	T	C	5360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.800;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-3.193;QD=9.71;ReadPosRankSum=-0.724;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:396,156:0.28:552
chr11	56143528	rs10791964	A	G	5632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.974;ClippingRankSum=0.000;DB;DP=638;ExcessHet=3.0103;FS=3.780;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.327;QD=8.87;ReadPosRankSum=1.562;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:466,169:0.27:635
chr11	56143534	rs78854227	A	G	5844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.513;ClippingRankSum=0.000;DB;DP=657;ExcessHet=3.0103;FS=7.132;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.328;QD=8.94;ReadPosRankSum=2.002;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:480,174:0.27:654
chr11	56143537	rs74691432	A	T	5868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.692;ClippingRankSum=0.000;DB;DP=661;ExcessHet=3.0103;FS=8.558;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.381;QD=8.92;ReadPosRankSum=2.853;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:487,171:0.26:658
chr11	56143539	rs75226392	T	C	5898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.699;ClippingRankSum=0.000;DB;DP=665;ExcessHet=3.0103;FS=8.558;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.382;QD=8.91;ReadPosRankSum=2.963;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:490,172:0.26:662
chr11	56143543	rs76579014	TT	CC	6066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=7.157;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-3.335;QD=8.99;ReadPosRankSum=2.645;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:496,179:0.27:675
chr11	56143556	rs80334520	T	A	6696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.026;ClippingRankSum=0.000;DB;DP=733;ExcessHet=3.0103;FS=11.029;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.284;QD=9.17;ReadPosRankSum=1.706;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:532,198:0.27:730
chr11	56143559	rs74603674	C	T	6938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.045;ClippingRankSum=0.000;DB;DP=742;ExcessHet=3.0103;FS=12.662;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.288;QD=9.39;ReadPosRankSum=1.600;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:539,200:0.27:739
chr11	56143561	rs75242425	AA	GG	7175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.554;ClippingRankSum=0.000;DB;DP=758;ExcessHet=3.0103;FS=12.662;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.303;QD=9.50;ReadPosRankSum=1.707;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:552,203:0.27:755
chr11	56143564	rs77640279	G	T	8272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.038;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=12.820;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-3.288;QD=10.66;ReadPosRankSum=1.345;SOR=1.509;set=HC	GT:AD:AF:DP	0/1:566,210:0.27:776
chr11	56143570	rs11228169	A	G	8575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.604;ClippingRankSum=0.000;DB;DP=845;ExcessHet=3.0103;FS=2.644;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.881;QD=10.20;ReadPosRankSum=-4.235;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:567,274:0.33:841
chr11	56143690	rs4990123	C	A	9283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=8.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.10;ReadPosRankSum=0.402;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:265,248:0.48:513
chr11	56143696	rs4990122	C	T	8987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=9.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.88;ReadPosRankSum=-0.512;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:246,230:0.48:476
chr11	56143699	rs4990121	T	G	8906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.044;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=9.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.07;ReadPosRankSum=-0.831;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:243,224:0.48:467
chr11	56143716	rs10896309	TG	CA	6483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.490;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=37.320;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=1.019;SOR=1.810;set=HC	GT:AD:AF:DP	0/1:230,161:0.41:391
chr11	56143723	rs12272349	T	C	5865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.988;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=28.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.29;ReadPosRankSum=-0.006;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:212,148:0.41:360
chr11	56143725	rs77042014	C	G	5526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=26.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=0.020;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:211,144:0.41:355
chr11	56143729	rs55888197	CC	TG	5228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.592;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=26.705;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.81;ReadPosRankSum=-0.046;SOR=1.644;set=HC	GT:AD:AF:DP	0/1:213,140:0.40:353
chr11	56143762	rs79307272	C	T	2535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=61.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=-1.503;SOR=3.227;set=HC	GT:AD:AF:DP	0/1:180,75:0.29:255
chr11	56143767	rs79705206	C	T	2426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=57.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.20;ReadPosRankSum=-2.063;SOR=3.169;set=HC	GT:AD:AF:DP	0/1:170,68:0.29:238
chr11	56143782	.	T	TGA	1862.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.554;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=42.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-2.505;SOR=2.750;set=HC	GT:AD:AF:DP	0/1:168,57:0.25:225
chr11	56143784	.	CAT	C	1832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.115;ClippingRankSum=0.000;DP=222;ExcessHet=3.0103;FS=52.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.29;ReadPosRankSum=-1.521;SOR=3.398;set=HC	GT:AD:AF:DP	0/1:172,49:0.22:221
chr11	56143795	.	G	A	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.692;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=40.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-1.964;SOR=2.935;set=HC	GT:AD:AF:DP	0/1:170,45:0.21:215
chr11	56143803	rs202193035	AG	GC	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=23.451;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.545;SOR=2.368;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr11	56143807	rs201727202	G	A	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.325;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=19.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-0.740;SOR=2.157;set=HC	GT:AD:AF:DP	0/1:167,32:0.16:199
chr11	56143810	rs201982103	T	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.055;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=14.073;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.613;SOR=1.762;set=HC	GT:AD:AF:DP	0/1:163,27:0.14:190
chr11	56143816	rs111512467	G	C	563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.399;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=10.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=1.037;SOR=1.677;set=HC	GT:AD:AF:DP	0/1:165,26:0.14:191
chr11	56143819	rs113312059	G	C	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.889;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=10.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.77;ReadPosRankSum=0.710;SOR=1.697;set=HC	GT:AD:AF:DP	0/1:168,26:0.13:194
chr11	56143823	rs77614949	G	A	449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.614;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=5.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.28;ReadPosRankSum=2.262;SOR=1.313;set=HC	GT:AD:AF:DP	0/1:175,22:0.11:197
chr11	56143858	rs78068762	G	C	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=4.251;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.687;QD=2.12;ReadPosRankSum=-1.078;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:168,23:0.12:191
chr11	56143864	rs111260371	C	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=5.812;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.730;QD=2.06;ReadPosRankSum=-1.678;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:166,22:0.12:188
chr11	56143867	rs111341120	T	C	389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=5.737;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.714;QD=2.10;ReadPosRankSum=-1.899;SOR=1.294;set=HC	GT:AD:AF:DP	0/1:164,22:0.12:186
chr11	56143882	rs113061820	G	A	323.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.002;QD=1.66;ReadPosRankSum=-2.030;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:174,21:0.11:195
chr11	56143885	rs111871244	T	A	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.016;QD=1.64;ReadPosRankSum=-2.070;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:175,21:0.11:196
chr11	56143891	rs112265664	T	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.285;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-5.289;QD=1.38;ReadPosRankSum=-1.764;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:176,19:0.10:195
chr11	56143898	rs373392784	G	T	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.512;QD=1.28;ReadPosRankSum=-1.643;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:171,17:0.09:188
chr11	56143900	rs202086525	C	T	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.501;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.560;QD=1.07;ReadPosRankSum=-1.534;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:174,17:0.09:191
chr11	56143903	.	G	T	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.698;QD=1.10;ReadPosRankSum=-1.360;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:172,16:0.09:188
chr11	56143906	rs201664860	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.181;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.317;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.341;QD=1.12;ReadPosRankSum=-2.167;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:170,18:0.10:188
chr11	56143907	rs374830614	A	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.216;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.374;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-5.325;QD=1.14;ReadPosRankSum=-2.197;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:169,18:0.10:187
chr11	56143936	rs72925527	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-5.314;QD=2.47;ReadPosRankSum=-2.520;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:132,19:0.13:151
chr11	56143942	rs72925528	C	T	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-5.703;QD=2.76;ReadPosRankSum=-2.871;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:127,20:0.14:147
chr11	56143963	rs199998773	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.349;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=18.065;MLEAC=1;MLEAF=0.500;MQ=59.68;MQRankSum=-4.470;QD=0.83;ReadPosRankSum=-0.463;SOR=3.776;set=HC	GT:AD:AF:DP	0/1:100,10:0.09:110
chr11	56143966	rs12291978	C	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.493;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=18.345;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.425;QD=0.87;ReadPosRankSum=-0.383;SOR=3.838;set=HC	GT:AD:AF:DP	0/1:98,10:0.09:108
chr11	56143969	.	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.842;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=18.250;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-4.380;QD=0.91;ReadPosRankSum=-0.076;SOR=3.818;set=HC	GT:AD:AF:DP	0/1:96,10:0.09:106
chr11	56143972	.	C	T	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.375;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=18.231;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.193;QD=1.17;ReadPosRankSum=-0.515;SOR=3.820;set=HC	GT:AD:AF:DP	0/1:88,10:0.10:98
chr11	56143976	.	C	A	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=15.587;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-4.145;QD=1.38;ReadPosRankSum=-0.487;SOR=3.702;set=HC	GT:AD:AF:DP	0/1:86,10:0.10:96
chr11	56143977	rs12272403	A	G	132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=15.557;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-4.121;QD=1.40;ReadPosRankSum=-0.529;SOR=3.640;set=HC	GT:AD:AF:DP	0/1:85,10:0.11:95
chr11	56143981	.	T	C	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.493;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=12.777;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.292;QD=1.05;ReadPosRankSum=0.181;SOR=3.326;set=HC	GT:AD:AF:DP	0/1:83,9:0.10:92
chr11	56143984	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.721;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=12.692;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=-4.214;QD=1.15;ReadPosRankSum=0.083;SOR=3.223;set=HC	GT:AD:AF:DP	0/1:80,9:0.10:89
chr11	56143987	rs199932239	G	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=12.548;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-4.025;QD=1.36;ReadPosRankSum=-0.214;SOR=3.142;set=HC	GT:AD:AF:DP	0/1:73,9:0.11:82
chr11	56143990	.	G	A	129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.866;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=7.362;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-4.564;QD=1.62;ReadPosRankSum=0.939;SOR=2.720;set=HC	GT:AD:AF:DP	0/1:73,7:0.09:80
chr11	56143999	.	T	C	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=4.923;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-4.896;QD=0.66;ReadPosRankSum=2.075;SOR=1.814;set=HC	GT:AD:AF:DP	0/1:60,5:0.08:65
chr11	56185224	rs12785840	A	G	5070.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	56237410	rs617315	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	56237722	rs605734	T	A	3346.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	56238047	rs35496190	A	G	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	56310222	rs628524	C	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	56310564	rs200803638	G	A	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	56310877	rs66945922	C	CTT	293.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	56344260	rs10896488	A	G	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	56344993	rs10792043	C	A	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	56380546	rs72003051	CCAGA	C	9291.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	56431216	rs11228710	C	T	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr11	56467757	.	CACG	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=1.184;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr11	56467763	.	A	AGAT	202.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.45;ReadPosRankSum=1.303;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr11	56467764	rs78916686	C	T	211.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=1.376;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr11	56467787	rs74218731	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr11	56467810	rs76085479	A	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.825;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=2.863;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.223;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:41,13:0.24:54
chr11	56467813	rs77180330	A	G	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.324;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.36;ReadPosRankSum=0.036;SOR=1.409;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr11	56467816	rs78119960	G	T	507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.864;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=-0.444;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chr11	56467819	rs78036340	A	G	529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.367;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=4.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.68;ReadPosRankSum=-0.714;SOR=1.596;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr11	56467833	rs73474897	T	C	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:58,21:0.27:79
chr11	56467881	rs73474900	T	C	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr11	56467926	rs1704284	A	G	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.191;QD=8.22;ReadPosRankSum=0.256;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:131,91:0.41:222
chr11	56467945	rs36184181	G	T	2186.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:145,108:0.43:253
chr11	56468020	rs532637	TG	CA	3424.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;JOINED;set=Intersection	GT:AD:AF:DP	0/1:143,92:0.39:235
chr11	56468044	rs3975155	T	G	9799.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.83;QD=45.37;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	56468047	rs2865519	AC	GT	9797.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=56.81;QD=45.57;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr11	56468111	rs602224	C	T	2367.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:109,106:0.49:215
chr11	56468198	rs4990194	A	G	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.737;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.844;QD=9.97;ReadPosRankSum=0.940;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:190,167:0.47:357
chr11	56468200	rs4990195	C	T	6539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.247;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-2.638;QD=18.47;ReadPosRankSum=1.065;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:189,165:0.47:354
chr11	56468202	rs4990196	G	A	6466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=59.82;MQRankSum=-2.630;QD=18.22;ReadPosRankSum=0.630;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:189,166:0.47:355
chr11	56468212	rs591369	G	A	6295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.750;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.380;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-2.452;QD=17.20;ReadPosRankSum=0.009;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:199,167:0.46:366
chr11	56468259	rs503776	C	T	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:202,265:0.57:467
chr11	56468368	rs11228733	C	T	2743.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:209,135:0.39:344
chr11	56468403	rs11228734	G	A	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:179,108:0.38:287
chr11	56468416	rs11228735	G	A	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:167,104:0.38:271
chr11	56468440	rs12421330	G	T	3352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.662;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=4.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.91;ReadPosRankSum=1.834;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:151,90:0.37:241
chr11	56468448	rs80194264	AA	GT	3434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.037;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=3.688;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=1.710;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:152,90:0.37:242
chr11	56468452	rs79970235	A	C	3450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.758;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=6.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.14;ReadPosRankSum=0.566;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:149,95:0.39:244
chr11	56468493	rs10792053	A	G	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:159,135:0.46:294
chr11	56468554	rs12420076	A	C	8955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.391;QD=20.13;ReadPosRankSum=1.681;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:219,226:0.51:445
chr11	56468560	rs10896516	TA	CG	9510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=468;ExcessHet=3.0103;FS=1.102;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.377;QD=20.32;ReadPosRankSum=2.016;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:228,240:0.51:468
chr11	56468637	rs76884192	C	T	5281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.23;ReadPosRankSum=1.308;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:308,264:0.46:572
chr11	56468646	rs78493274	C	T	9640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=2.054;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:316,255:0.45:571
chr11	56468694	rs79060400	C	T	8477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.06;ReadPosRankSum=-0.686;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:303,225:0.43:528
chr11	56468699	rs79251113	T	A	8591.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=1.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=-0.963;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:300,223:0.43:523
chr11	56468704	rs79288825	T	C	8485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=1.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=-1.012;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:299,223:0.43:522
chr11	56468720	rs66943455	T	C	7757.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:278,214:0.43:492
chr11	56468817	rs74605930	G	T	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=2.788;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=13.98;ReadPosRankSum=-1.322;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:117,73:0.38:190
chr11	56468819	rs78460796	CC	TT	2656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.601;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.858;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:116,71:0.38:187
chr11	56468828	rs530142	G	C	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-0.584;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:103,55:0.35:158
chr11	56468832	rs79579174	G	T	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.432;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-0.517;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:99,51:0.34:150
chr11	56468835	rs588308	G	T	1731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.815;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=12.03;ReadPosRankSum=-0.503;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:95,49:0.34:144
chr11	56468870	.	GTG	ACA	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=4.954;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=10.16;ReadPosRankSum=-0.193;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr11	56468877	.	G	A	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.000;SOR=1.105;set=HC	GT:AD:AF:DP	0/1:45,19:0.30:64
chr11	56468881	.	C	T	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.103;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr11	56468883	.	T	C	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.591;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=10.31;ReadPosRankSum=0.112;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr11	56468893	rs79757227	G	A	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=8.85;ReadPosRankSum=1.088;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr11	56468897	.	G	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.867;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.000;QD=9.95;ReadPosRankSum=0.340;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr11	56468909	rs79696743	TG	CA	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr11	56508525	rs556056	A	G	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	56508619	rs545772	G	A	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	56510623	rs513873	A	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	56510672	rs577576	T	C	10664.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr11	56510694	rs1397053	T	C	10972.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	56570067	rs7121576	A	G	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr11	57004344	rs948847	G	T	5163.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	57081197	rs4939134	G	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	57081475	rs4939135	C	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	57135663	rs55655702	A	AG	2074.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	57137296	rs2276040	G	A	6925.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	57137538	rs67821929	A	AG	2791.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	57144152	rs1867126	G	C	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	57144500	rs10896613	G	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	57147016	rs540687	A	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	57147353	rs544079	G	C	1309.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	57148053	rs571651	G	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	57148175	rs669661	A	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	57155001	rs536455	G	A	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	57155288	rs630396	T	C	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	57156438	rs3741089	A	G	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	57157405	rs490358	A	G	6043.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr11	57166969	rs3741085	C	T	6225.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	57184218	rs4938865	C	T	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	57243588	rs2258835	A	G	20908.77	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:2,790:1.00:792
chr11	57258617	rs2729384	T	C	3036.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	57265400	rs2581922	C	T	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	57268170	rs2250673	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	57334430	.	C	CCCGCCG,CCGCCG	519.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=22;set=Intersection	GT:AF:DP	1/1:1.00:10
chr11	57334508	rs4939152	G	A	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	57346723	rs112429940	GCACCCTA	G	2109.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	57379170	rs2511988	A	G	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	57424389	rs55969690	GA	G	426.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.899;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;MQRankSum=0.408;QD=17.07;ReadPosRankSum=1.187;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr11	57460224	rs12801694	C	T	2120.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	57461225	rs141993890	GTC	G	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.979;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.368;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:36,7:0.16:43
chr11	57505520	.	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=3.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.37;ReadPosRankSum=-1.953;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chr11	57509429	rs635663	A	G	4132.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	57518392	rs56392705	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	57571232	rs11229137	C	T	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:2,170:0.99:172
chr11	57571336	.	T	TA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.981;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=5.691;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.302;QD=3.42;ReadPosRankSum=0.111;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chr11	57581613	rs623541	C	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	57582847	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.684;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=0.781;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:94,18:0.16:112
chr11	57799183	rs7123727	C	T	9903.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	57799371	rs1374570	G	C	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	57876436	rs7935428	C	A	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr11	57995330	rs17555381	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	57996084	rs61902844	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	57996312	rs4245219	C	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	58207204	rs4938895	A	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	58295748	rs35632700	TCA	T	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	58318619	rs1047979	C	G	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr11	58346953	rs143372783	G	A	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	58478084	rs675815	T	C	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	58491921	rs10896818	A	T	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	58492073	rs58778620	GTT	G,GT	1185.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=58;set=Intersection	GT:AF:DP	1/1:0.89:45
chr11	58602309	rs11229651	C	T	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	58604712	rs11229653	T	C	3827.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	58605673	rs11229655	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	58605922	rs10896850	A	G	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	58674948	rs150638642	TTTTG	T	1509.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	58919813	rs10896928	A	G	8950.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	58940278	rs12796683	G	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	58978940	rs544864	C	T	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	59056153	rs1894123	C	T	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=25.51;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	59189405	rs9988824	T	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	59189912	rs1453547	G	A	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	59190499	rs11602535	T	C	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	59190529	rs34222593	TACAA	T	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	59210550	rs7947825	G	A	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	59210761	rs11605572	C	G	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr11	59211421	rs17591107	C	T	4301.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	59224608	rs1453544	A	G	6842.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	59224720	rs1453543	A	G	7020.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	59224885	rs1453542	G	C	5794.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	59225221	rs1453541	T	C	9117.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	59271637	rs7120079	T	C	7874.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	59368218	rs367608218	CA	C	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=1.687;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=1.80;ReadPosRankSum=0.095;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:102,42:0.29:144
chr11	59369401	rs7106463	A	G	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	59417201	rs111578876	AT	A	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.676;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=3.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=1.819;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr11	59420570	.	G	GTT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.635;QD=4.91;ReadPosRankSum=0.675;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr11	59427010	.	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=16.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=2.699;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr11	59480951	rs499033	T	C	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	59626477	rs370252349	TA	T	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.898;QD=0.64;ReadPosRankSum=-2.787;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr11	59858036	rs2847663	C	G	177.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	59860178	rs502581	G	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	59940396	rs595718	A	G	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.59;SOR=2.338;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	59940400	rs2044979	C	T	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=2.206;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	59940403	rs2044978	A	G	3356.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.98;SOR=1.917;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	59940407	rs592346	A	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=1.725;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	59940599	rs7232	T	A	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	59942815	rs7935829	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	59943109	rs2278867	A	T	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	59945745	rs12453	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	59945972	.	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=4.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.812;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr11	59946302	rs598862	C	T	9902.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	59946310	rs5792172	CA	C	3366.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:12,179:0.94:191
chr11	59946466	rs587634	T	A	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	59997335	rs608659	T	C	5415.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	60057715	rs4939331	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	60068614	rs7949560	G	C	206.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	60070176	rs6591561	A	G	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	60070253	rs6591562	G	A	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	60073597	rs4644658	C	T	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	60073702	rs3018806	A	T	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	60102790	rs1443250	G	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	60105366	rs2289613	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	60107470	rs2289612	C	A	2762.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	60152482	rs2233243	A	G	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	60152563	rs950803	T	A	3663.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	60152584	rs950802	G	A	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	60152799	rs2233245	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	60157107	rs2233252	T	G	5452.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=2.237;SOR=0.255;set=HC	GT:AD:AF:DP	1/1:1,210:1.00:211
chr11	60157166	rs2233253	C	T	3789.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	60161438	.	TA	T	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=0.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-0.715;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:79,26:0.25:105
chr11	60163958	rs6591579	G	A	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	60164204	rs2241920	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	60164302	rs2241921	C	T	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	60165352	rs3217518	ATT	A	17715.73	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr11	60172087	rs10750937	C	T	9078.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr11	60172273	rs10897057	A	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	60173360	rs4938941	A	G	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	60173554	rs4939353	A	G	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	60182970	rs7131283	A	T	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	60184191	rs3825020	G	A	9682.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	60198328	rs708229	C	T	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	60202747	rs894590	C	A	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	60202798	rs11377519	C	CA	374.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	60230722	rs10792278	G	T	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	60264755	rs2298551	G	A	6527.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	60264947	rs2298552	C	T	8798.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	60265002	rs2298553	C	T	6091.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	60265164	rs2298554	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	60268679	rs2186918	G	C	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	60268736	rs2298555	C	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	60271325	rs2298556	A	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	60274393	rs2298558	G	A	4436.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	60274640	rs2298559	T	C	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	60285575	rs10736706	A	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	60291413	rs6591595	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	60309947	rs4939400	A	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	60531264	rs12363342	A	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	60534901	rs4939450	G	C	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	60559805	rs931861	A	G	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	60567275	rs579967	G	A	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr11	60617646	rs495949	T	C	22034.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:0,837:1.00:837
chr11	60620585	rs2467642	A	G	8259.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	60620590	rs2428461	C	G	8383.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.36;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	60635091	rs550479	T	C	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	60637164	rs489172	C	T	29418.77	.	AC=2;AF=1.00;AN=2;DB;DP=1097;set=Intersection	GT:AD:AF:DP	1/1:0,1094:1.00:1094
chr11	60638470	rs566411	A	G	18627.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr11	60658566	.	AC	A	94.84	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.81;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	60705454	rs2905692	A	G	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	60750048	rs2905506	T	C	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	60750240	rs3019541	G	A	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	60750298	rs72195127	GTCTGCAGGGAC	G	1432.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	60776186	rs11230562	C	T	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	60776306	rs2074225	C	T	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	60776334	rs2905518	A	G	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	60776465	rs11230564	A	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	60778513	rs74860834	T	C	5226.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	60778650	rs10528068	C	CGT,CGTGT	2418.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=213;set=Intersection	GT:AF:DP	1/2:0.19,0.69:137
chr11	60783126	rs3019556	C	T	34381.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.59;SOR=0.882;set=HC	GT:AD:AF:DP	1/1:0,771:1.00:771
chr11	60783135	rs3019557	A	G	36168.77	.	AC=2;AF=1.00;AN=2;DB;DP=851;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,848:1.00:848
chr11	60784934	rs2074231	A	G	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	60785038	rs2074232	A	G	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	60785352	rs1050922	A	G	6521.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	60785464	rs2074233	G	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	60890563	rs4245224	C	T	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	60891310	rs7106643	T	C	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	60892606	rs637186	A	G	12236.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr11	60893235	rs2229177	C	T	11280.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr11	60899767	rs754382	A	G	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	60906450	rs508970	A	G	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	61018328	rs603061	A	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	61044021	.	TA	T	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.875;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:46,30:0.39:76
chr11	61058867	rs6591651	T	C	3438.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	61100308	rs2512810	G	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.47;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	61106525	rs2512809	C	T	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	61106892	rs2513329	G	C	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr11	61108974	rs2260655	G	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	61110169	rs4939514	A	C	12376.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr11	61111346	rs35723406	C	G	10993.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr11	61111831	rs145461522	CTT	C,CT	2125.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.045;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=2.028;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.05;MQRankSum=0.281;QD=17.71;ReadPosRankSum=1.592;SOR=1.473;set=HC	GT:AD:AF:DP	1/2:5,85,30:0.71,0.25:120
chr11	61112802	rs2305465	C	T	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	61123965	rs76030461	A	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	61404336	rs17626916	G	A	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	61405104	rs12281961	T	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	61405178	rs1143563	T	TA	130.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=0.366;QD=13.07;ReadPosRankSum=0.792;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr11	61490486	rs198426	C	T	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	61491097	rs566009	A	G	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	61523300	rs10709102	GA	G	2189.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	61524974	rs198460	G	A	8789.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	61525020	rs198459	G	A	6146.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	61533797	rs4963418	A	T	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	61539020	rs149803	C	G	18078.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr11	61548559	rs509360	A	G	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	61548874	rs174532	G	A	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	61641211	rs6591665	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	61647427	rs174635	T	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	61658629	rs693672	T	C	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	61658800	rs174465	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	61670037	rs174471	C	T	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	61674118	rs174476	C	T	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	61724514	rs195162	C	T	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	61725599	rs113492158	A	ATCCTCCTCC,ATCCTCC	4494.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=102;set=Intersection	GT:AF:DP	1/1:1.00:91
chr11	61726871	rs195158	G	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	61730183	rs1800008	C	T	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	61730234	rs1800009	T	C	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	61730553	rs17185413	T	C	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr11	61731534	rs195155	G	T	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	61735553	rs11271453	T	TGCTGCAGATTGGGAA	3097.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	61736135	rs77709427	GT	TG	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	61895541	rs1675130	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	61895741	rs1675131	A	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	61896215	rs1792946	G	A	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	61897197	rs1792944	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	61897359	rs1675133	C	T	11169.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	61906299	rs1614060	A	G	8436.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr11	61906374	rs1675126	T	C	8694.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	61907909	rs1675124	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	61908440	rs2277283	T	C	12685.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr11	61908672	rs1675123	G	A	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	61913196	rs7129085	G	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.675;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	61914056	rs11230931	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	61915823	rs3890102	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	61959725	rs3831484	GTC	G	2292.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	62010667	rs2232949	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	62037583	rs11603383	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	62040519	rs17709552	A	G	6391.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr11	62040655	rs72919472	C	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	62124696	rs143687152	C	CTTTTG	482.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	62156572	rs74692811	G	A	4148.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	62158886	rs2958531	G	T	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	62158924	rs2958532	C	T	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	62190448	rs11231085	C	G	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	62201458	rs4084164	A	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	62292882	rs566144	G	T	14164.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr11	62293948	rs486903	G	A	10513.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	62328038	rs11231144	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	62334096	rs7124057	A	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	62334908	rs1061093	G	C	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=26.66;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	62365619	rs11231155	A	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	62369018	rs12226821	C	G	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr11	62369881	rs35156678	G	A	5348.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.93;SOR=2.353;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	62369884	rs35880596	C	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.12;SOR=2.541;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	62370155	rs71490394	G	A	8463.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	62370490	rs71458425	C	CGAGGGCCG	19670.73	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr11	62378660	rs12808829	G	A	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	62378801	rs11553576	T	C	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	62380027	rs113222038	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	62380732	rs4387351	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	62381106	rs1799959	G	C	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	62381483	rs72927237	T	C	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	62381703	rs35904570	C	CT	12734.73	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr11	62381808	rs1801144	G	C	19308.77	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,723:1.00:723
chr11	62384869	rs4963224	T	C	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	62394881	rs7949030	A	G	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	62397177	rs948683	C	G	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	62400016	rs10897289	T	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	62401716	rs2957121	A	G	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	62432815	rs4489748	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	62434173	rs11231181	G	A	9241.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr11	62438750	rs17637597	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	62438846	rs3809079	G	A	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	62458275	rs6856	T	C	8006.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr11	62469929	rs72929434	C	A	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	62487378	rs12291015	T	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	62490219	rs576251	G	A	12378.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr11	62496519	rs584845	T	C	7034.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr11	62500444	rs143308039	CT	C	409.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.38;ReadPosRankSum=0.188;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:5,31:0.86:36
chr11	62505764	rs6675	C	T	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	62521408	rs72929469	A	T	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	62521475	rs72929471	T	C	14406.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr11	62521663	rs3829248	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	62546491	.	G	GTT	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=3.933;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-2.797;SOR=0.314;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr11	62554301	rs200047501	C	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	62555059	rs3087924	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	62563353	rs539465	G	A	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	62564009	rs4693	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	62638197	.	AT	A	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.527;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.18;ReadPosRankSum=-0.680;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr11	62638328	.	AT	A	30.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.101;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr11	62638330	rs11231260	T	A	549.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.49;ReadPosRankSum=0.213;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr11	62638331	.	ATT	A	30.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.051;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr11	62638333	rs55725256	T	A	558.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.262;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.94;ReadPosRankSum=0.000;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr11	62638336	rs199540960	T	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.79;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	62638339	rs201005789	T	A	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=0.656;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr11	62652063	rs489381	A	G	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	62744899	rs3017670	A	G	927.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	62747145	rs3017671	A	G	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	62748289	rs4149174	A	G	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	62749590	rs11568621	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	62751812	rs11568629	T	C	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	62751911	rs11568628	C	A	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	62752182	rs4149171	T	C	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	62782480	rs181488394	A	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	62847453	rs7945121	T	C	3150.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	62847562	rs7926818	G	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	62848367	rs10897341	A	C	146.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	62848445	rs11231340	A	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	62848487	rs11231341	A	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	62848568	rs11231342	C	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	62848995	rs6591733	G	C	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	62850684	rs4963356	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	62863518	rs7113279	A	G	8047.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	62871460	rs12283166	C	T	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	62886319	rs948060	G	C	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	62902172	rs1939782	A	C	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	62910849	rs1939749	T	C	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	62911079	rs1939748	G	C	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	62931484	rs6591771	T	C	3327.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.455;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.142;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.83;ReadPosRankSum=-0.580;SOR=0.343;set=HC	GT:AD:AF:DP	1/1:1,133:0.99:134
chr11	62951064	rs1525072	C	A	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	62951221	rs11231397	C	G	8402.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr11	62984697	rs7949840	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	62984868	rs11231409	T	C	5949.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	62985544	rs12417255	C	T	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	62987638	rs11336277	CA	C	190.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	62995875	rs7106186	G	A	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	62996162	rs7126435	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	63067181	.	AGT	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.954;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.18;ReadPosRankSum=2.276;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr11	63129876	rs516763	T	G	5641.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	63258416	rs10897424	T	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.30;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	63274120	rs12272556	G	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	63278621	rs2239679	C	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	63313644	rs584905	T	C	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	63357919	rs593759	C	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	63413962	rs147319344	AAAAT	A	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	63487386	rs542998	T	C	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr11	63657494	rs4980528	G	A	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	63663130	.	CTTTTTTTTTTTTT	C,CT	1421.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=18.698;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.06;MQRankSum=0.349;QD=36.45;ReadPosRankSum=1.817;SOR=4.340;set=HC	GT:AD:AF:DP	1/2:2,22,15:0.56,0.38:39
chr11	63668557	rs224174	C	T	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	63670387	rs1486936	C	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	63673603	.	CTG	C	1302.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;MQRankSum=0.352;QD=26.05;ReadPosRankSum=0.790;SOR=1.657;set=HC	GT:AD:AF:DP	1/1:3,47:0.94:50
chr11	63676313	rs56263226	G	GC	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr11	63679369	rs320108	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.83;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	63680297	rs320110	A	G	12423.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr11	63681513	rs10897461	T	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	63681648	rs4980533	G	A	3889.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	63682312	rs4375445	G	C	23065.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.79;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,515:1.00:515
chr11	63682315	rs34212439	C	G	23211.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.87;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr11	63682318	rs11231638	G	C	22879.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,507:1.00:507
chr11	63682869	rs3802941	A	G	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	63706441	rs28683669	G	A	141.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.43;QD=17.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	63713239	rs3740636	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	63720086	rs4980513	T	G	4333.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	63883985	rs614397	T	C	15476.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr11	63884027	rs614035	C	T	14773.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr11	63885632	rs4379854	A	G	12351.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	63885704	rs677447	C	T	12719.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr11	63994692	rs1860368	T	C	17443.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,393:1.00:393
chr11	63994696	rs2429456	T	C	17511.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	63995302	rs2429455	C	G	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	63997329	rs633561	A	G	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	63997338	rs633557	T	C	4917.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	63997882	rs11311686	AT	A	1922.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:11,122:0.92:133
chr11	63998544	rs117714304	G	A	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	64002238	rs7482791	T	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	64004557	rs112715386	AAGAGAGAG	A	1657.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;QD=33.83;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,48:0.98:49
chr11	64011441	rs654573	T	C	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr11	64012225	rs605187	G	C	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	64012910	rs60031276	A	G	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	64012949	rs57467371	TG	T	290.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	64022459	rs632439	A	G	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	64024056	rs588177	C	A	8325.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	64026144	rs2244625	G	A	22429.77	.	AC=2;AF=1.00;AN=2;DB;DP=858;set=Intersection	GT:AD:AF:DP	1/1:0,855:1.00:855
chr11	64030944	rs2510067	T	C	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	64052306	rs652611	T	G	9405.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	64066859	rs2232417	G	A	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	64082437	rs650008	C	T	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	64083269	rs201336331	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.047;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-6.679;QD=1.85;ReadPosRankSum=0.378;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:85,12:0.12:97
chr11	64083276	rs200055490	A	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.289;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-5.521;QD=1.90;ReadPosRankSum=0.774;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:74,10:0.12:84
chr11	64083290	rs150848359	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-5.546;QD=1.38;ReadPosRankSum=0.764;SOR=0.423;set=HC	GT:AD:AF:DP	0/1:67,9:0.12:76
chr11	64083293	rs201971362	G	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-6.060;QD=1.69;ReadPosRankSum=1.591;SOR=0.400;set=HC	GT:AD:AF:DP	0/1:62,7:0.10:69
chr11	64083295	.	CGGG	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=3.844;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-6.445;QD=1.06;ReadPosRankSum=2.310;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:60,6:0.09:66
chr11	64083300	rs199950340	G	A	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.363;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=4.670;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-6.071;QD=0.98;ReadPosRankSum=2.009;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:53,6:0.10:59
chr11	64083318	.	G	A	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.311;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=10.702;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-5.553;QD=4.37;ReadPosRankSum=-0.787;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr11	64083320	rs201072913	T	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=10.702;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-5.553;QD=4.31;ReadPosRankSum=-0.861;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:37,8:0.18:45
chr11	64083328	rs79204587	C	T	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.938;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.894;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-5.047;QD=3.47;ReadPosRankSum=0.054;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr11	64083331	rs80310817	C	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.894;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.378;QD=2.76;ReadPosRankSum=0.000;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chr11	64085074	rs550819	T	A	10080.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr11	64085785	rs7938623	A	G	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	64085938	rs7941847	T	C	8321.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	64088435	rs566049	A	G	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	64107735	rs663743	G	A	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	64109118	rs647152	T	G	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	64109315	.	GGTTGTGGTCTGAGGTCTTGGGCCATCAGTGATGTCACAACCAGATGGCCCAAGACCCCAGACCACAACCCCATGTCTGGT	G	570.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.562;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=30.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.831;SOR=3.714;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr11	64110348	rs11602301	T	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	64110422	rs11601860	A	T	163.79	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.47;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	64110668	rs574835	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	64110683	rs479552	G	C	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	64111928	rs685870	T	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	64116843	rs1318165	A	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	64118422	rs614047	G	C	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	64120435	rs489419	T	C	3934.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	64120451	rs61886887	C	T	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	64124515	rs612448	T	C	9699.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr11	64124622	rs61886888	G	A	9205.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr11	64124823	rs519763	C	T	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	64124940	rs600377	T	G	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	64124980	rs542907	G	A	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	64127744	rs521950	A	G	2046.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	64127881	rs564687	T	G	7634.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	64128423	rs516124	G	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	64135435	rs508168	G	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	64135541	rs3217512	GTC	G	23371.73	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr11	64136877	rs11606015	C	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	64137875	rs11606081	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	64138805	rs11542299	T	C	7219.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr11	64138905	rs17857342	T	G	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	64359286	rs3825016	C	T	7191.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	64360274	rs11231825	T	C	12144.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr11	64361384	rs2021860	G	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	64365943	rs1529909	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	64367050	rs1705361	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	64367325	rs1630320	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	64387932	rs2277311	G	A	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	64418900	rs526338	G	A	8783.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	64480308	rs2666560	C	T	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	64480641	rs2518907	G	A	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	64494978	.	ATTT	A	51.06	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.77;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	64496587	rs559977	T	C	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	64497161	rs534221	C	T	5870.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=25.64;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	64497189	rs533515	A	C	5362.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=-0.142;QD=20.47;ReadPosRankSum=0.473;SOR=0.513;set=HC	GT:AD:AF:DP	1/1:7,255:0.97:262
chr11	64503179	rs553618	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	64503496	rs556356	A	G	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	64503543	rs33956572	CT	C	2607.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	64507315	rs550930	T	C	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	64507680	rs547280	A	C	16089.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr11	64507799	rs546323	G	C	10118.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr11	64510898	rs2904961	C	T	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	64511050	rs2073797	G	C	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	64520942	rs2959652	G	T	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	64522066	rs625172	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	64525216	rs589691	C	T	7313.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	64525464	rs490980	C	T	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	64525644	rs489192	G	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	64535357	rs575375	T	C	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr11	64535849	rs561158	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	64536866	rs484886	T	C	6371.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	64563934	rs483544	A	G	10308.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr11	64565175	rs35199527	C	CT	204.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.342;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.839;QD=8.91;ReadPosRankSum=-0.337;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr11	64567047	rs3832792	GCA	G	21122.73	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,559:1.00:559
chr11	64572018	rs2959656	T	C	6638.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	64572557	rs540012	A	G	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	64572602	rs2071313	G	A	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	64591972	rs10792447	T	C	6891.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr11	64594490	rs646709	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	64596916	rs10897529	C	T	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	64597506	rs3741395	T	C	9927.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr11	64598944	rs684071	A	G	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	64602782	rs11605623	C	T	13859.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:2,530:1.00:532
chr11	64603844	rs138577794	A	ACTCACCCAC	9808.73	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:4,349:0.99:353
chr11	64604178	rs2904960	T	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	64604195	.	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=7.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.98;ReadPosRankSum=3.067;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr11	64605689	rs541525	A	G	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	64606765	rs676977	T	C	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	64606910	rs142726755	C	CCTGCTCCCA	4826.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	64621856	rs3897618	A	G	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	64622869	rs10897533	G	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	64645871	rs1211284	A	G	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr11	64664774	rs658006	C	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	64669417	rs682673	T	C	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	64677293	rs656195	G	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	64678920	rs638583	T	C	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	64680407	rs594820	G	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	64680819	rs618006	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	64695185	.	GA	G	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.028;QD=2.44;ReadPosRankSum=0.193;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:72,40:0.36:112
chr11	64700767	rs675090	G	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	64702200	rs673995	C	T	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr11	64702765	rs2307669	C	CTCTG	1736.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	64703083	.	TTG	T	55	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=24;MQ=60.0;NF=0;NR=2;PP=55;QD=30.5;SC=GTATCTGCCTTTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=15;TCF=1;TCR=14;TR=2;WE=64703092;WS=64703073;set=Platypus	GT:AD:AF:DP	1/0:13,2:0.13:15
chr11	64707978	rs586616	A	G	2170.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	64713485	rs596321	T	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	64715330	.	C	CT	131.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.304;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr11	64717801	rs71049671	C	CAA	810.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=0.057;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr11	64718050	rs138174447	TTTTC	T	1234.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.10;QD=41.16;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	64721908	rs495330	G	A	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	64726701	rs602404	A	C	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	64757504	rs574381	G	C	17967.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr11	64761779	rs626670	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	64789194	rs664226	T	C	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	64794918	rs3832791	T	TG	2503.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	64799789	rs532373	C	T	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	64799894	rs678614	A	C	7883.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr11	64799998	rs534236	T	C	8951.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr11	64802267	rs6591869	G	A	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	64807294	rs653111	G	A	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	64808647	rs10160811	A	C	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	64808681	rs34998502	AC	A	2216.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	64809090	rs12271134	T	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr11	64809133	rs10792455	T	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	64809167	rs10792456	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	64809441	rs3862374	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	64810771	rs11231929	A	G	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.559;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	64820654	rs477539	C	T	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	64833935	rs548150	G	A	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	64834432	rs573957	T	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	64835306	rs492799	C	A	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	64835463	rs149675910	ACT	A	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=2.839;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:117,29:0.20:146
chr11	64847363	rs372909961	CT	C	157.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.552;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr11	64851305	rs947799	C	T	9137.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	64851453	rs35819335	CT	C	19296.73	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	64856500	rs525781	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	64878661	rs625004	T	C	14305.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	64880090	rs4930284	G	C	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	64883864	rs1706937	A	G	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	64884052	rs1546532	G	A	6700.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr11	64888456	rs9333579	A	G	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	64889416	rs769440	G	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	64897453	rs1206196	C	T	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	64898357	rs11369296	G	GC	10970.73	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	64972464	rs17881454	C	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	64977644	rs625750	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	64977937	rs542380	A	G	11059.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr11	64981472	rs239258	G	C	15395.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr11	64981853	rs239259	G	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	64990041	rs514076	G	C	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	64993195	rs10633296	C	CAGTA	3440.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	65000478	rs2904978	C	T	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	65000719	rs2904979	C	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	65003812	rs625427	T	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	65004301	rs2904982	G	T	12502.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr11	65118971	rs620888	T	C	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	65143701	rs80042162	CT	C	2722.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	65144075	rs624307	T	C	13815.77	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr11	65147294	rs547221	G	A	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr11	65147862	rs573864	C	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	65154665	rs188855238	C	T	5282.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	65161129	rs2073800	C	T	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	65178620	rs2957274	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	65211734	.	CTGTGTGTGTG	C	721.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.45;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	65233652	.	C	T	4137.77	.	AC=1;AF=0.500;AN=2;DP=412;set=Intersection	GT:AD:AF:DP	0/1:207,204:0.50:411
chr11	65271779	rs36002528	CT	C	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.020;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.212;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:115,41:0.26:156
chr11	65273568	rs11367099	TA	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-1.377;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:54,24:0.31:78
chr11	65314778	rs186511849	G	T	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=43.24;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	65314778	.	GCA	TCG	1518	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=3;HapScore=1;MGOF=13;MMLQ=23;MQ=59.45;NF=32;NR=9;PP=1518;QD=38.3284847527;SC=TCTCACCACCGCACTCCAGCC;SbPval=0.67;Source=Platypus;TC=45;TCF=34;TCR=11;TR=41;WE=65314788;WS=65314769;set=Platypus	GT:AD:AF:DP	1/1:4,41:0.91:45
chr11	65314780	rs190969559	A	G	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=44.32;SOR=1.788;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	65320780	rs4244811	G	A	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.43;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	65347297	rs5792362	C	CA	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-1.221;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:7,18:0.72:25
chr11	65347636	rs1194100	G	C	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	65349063	rs3741380	G	A	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr11	65349756	rs6591182	T	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	65349849	rs1194099	A	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	65357697	rs1151503	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	65359625	rs4261292	C	G	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	65373621	rs1151527	A	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	65383896	rs7947140	G	C	13140.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,498:1.00:498
chr11	65385606	rs1151489	A	G	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	65387378	rs61744384	T	A	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr11	65389631	rs1144789	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	65391317	rs12801636	G	A	5717.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	65394274	rs142411406	C	G	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	65412467	rs2306364	G	A	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	65415028	rs4930157	T	G	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	65423082	rs1144792	G	A	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	65427568	rs732072	G	A	5744.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	65429333	.	T	C	11892.77	.	AC=2;AF=1.00;AN=2;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr11	65480791	rs551115	A	G	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	65481166	rs1151500	T	C	6340.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	65481465	rs487264	T	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	65484569	rs563427	A	G	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	65548108	rs76925283	C	T	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	65561468	rs644740	C	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	65562257	rs2276133	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	65562852	rs72922786	G	C	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	65601560	rs17854357	G	C	9547.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	65617113	rs11327250	AG	A	6084.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	65623739	rs11227332	A	G	13164.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr11	65630098	rs3216088	T	TG	2416.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.528;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.299;MLEAC=2;MLEAF=1.000;MQ=60.56;MQRankSum=0.828;QD=23.02;ReadPosRankSum=-0.732;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:10,95:0.90:105
chr11	65636053	rs601314	T	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	65637984	rs630394	C	G	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	65647796	.	C	CT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DP=313;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.170;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:174,47:0.21:221
chr11	65649774	rs604630	A	G	6092.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr11	65653242	rs568617	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	65654917	rs35947009	G	GA	218.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.632;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.319;QD=12.87;ReadPosRankSum=0.794;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:3,14:0.82:17
chr11	65655393	rs641018	G	C	6623.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	65661656	rs507062	T	C	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	65664346	rs637571	T	C	2244.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	65667796	rs1058068	G	A	652.81	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.76;ReadPosRankSum=1.214;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr11	65684929	rs9667389	C	T	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	65685225	rs7947504	T	C	8881.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr11	65713207	rs9795469	T	C	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	65727301	rs491973	A	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	65732651	rs550435	G	A	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	65732800	rs552130	T	C	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr11	65733289	rs556643	G	A	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	65734539	rs1151505	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	65735174	rs660118	G	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	65744265	rs2276016	C	T	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.17;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	65744275	rs543952	T	C	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	65744421	rs542332	C	T	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	65746653	rs679581	A	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	65767153	rs507672	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	65767215	rs506873	G	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	65771050	rs147010511	TCACTGAG	T	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	65780702	rs9667817	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	65788072	rs3814747	C	T	6274.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr11	65789137	rs34114713	C	G	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr11	65793454	rs1203998	C	T	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	65793797	rs1893316	G	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	65793874	rs3841469	CA	C	860.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	65810209	rs61895584	C	T	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	65810749	rs7937692	T	C	5788.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	65824472	rs547404	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	65825951	rs491618	T	A	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	65826704	rs1049872	G	A	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	65868310	rs475817	T	A	12433.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr11	65868455	rs56269595	C	T	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	65983522	rs548858	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	65985000	rs557082	A	C	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	65997898	rs561948	A	G	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	66010633	rs524268	T	C	6361.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	66029130	rs572827	G	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	66031450	rs525698	T	C	6600.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	66031660	rs1151539	C	T	8261.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	66033301	rs474005	C	T	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr11	66036293	rs150627444	A	ACC,ACCC	5064.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.492;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=7.512;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.94;MQRankSum=0.000;QD=36.18;ReadPosRankSum=0.796;SOR=4.599;set=HC	GT:AD:AF:DP	1/2:3,48,89:0.34,0.64:140
chr11	66040049	rs555853	G	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.62;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	66040053	rs555826	A	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	66043388	rs61734075	G	A	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	66050948	rs3016315	C	T	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	66054823	rs510398	C	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	66059782	rs6591210	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	66083129	rs3741367	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	66083782	rs3741368	G	A	12655.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr11	66099987	rs1784029	C	T	14224.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	66100152	rs1784030	T	C	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	66101974	rs3016317	C	T	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	66103046	rs3016763	C	T	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	66104057	rs3016316	T	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	66107527	rs1785633	C	A	9398.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	66107674	rs1784035	A	G	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	66108660	rs947978	C	T	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	66109033	rs11537993	T	C	11134.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr11	66109527	rs112182142	C	CTGTG,CTGTGTG	5482.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=141;set=Intersection	GT:AF:DP	1/2:0.21,0.78:134
chr11	66109779	rs1784037	AT	GA	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	66130736	rs1039593	A	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	66131149	rs1039594	C	T	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	66131906	rs7125100	A	G	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	66133311	rs4930358	T	C	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	66133336	rs2279861	A	G	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	66135179	rs2279862	C	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	66135898	rs2292123	T	C	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	66138894	rs7946434	G	C	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	66206169	rs11110	C	T	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.91;SOR=1.193;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	66262806	rs10791878	T	C	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	66272142	rs1671063	A	G	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	66278059	rs1791688	C	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	66285268	rs10736656	G	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	66299515	rs8432	A	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	66318972	rs490998	G	A	2492.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	66321927	rs56394515	C	CA	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.202;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.332;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:30,46:0.61:76
chr11	66324583	rs678397	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	66324762	rs677488	C	T	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	66327673	rs1671064	G	A	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	66328095	rs1815739	T	C	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	66328719	rs618838	T	C	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	66328877	rs607736	G	A	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	66329732	rs540874	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	66331458	rs572846	A	G	1927.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	66333598	rs545009	C	T	9525.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	66335308	rs2242663	T	C	4442.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	66335548	rs1127894	A	G	4454.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	66358126	rs486584	C	T	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	66393248	rs139146740	GTCTTC	G	2457.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	66406070	rs670900	A	C	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	66456387	rs2276138	T	C	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,143:0.99:144
chr11	66458696	rs12804382	C	T	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	66469032	rs532439	T	C	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr11	66472274	rs4930388	T	C	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	66481264	rs615536	C	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	66583759	rs7930203	A	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	66583779	rs543191	T	G	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	66610645	rs7570	G	C	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	66626234	rs3741194	T	C	4153.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	66626574	rs201994951	C	T	9452.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr11	66812338	rs11227668	A	G	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	66833265	rs12803688	G	A	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	66833327	rs12287978	G	A	13602.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr11	66834252	rs2282502	C	T	8075.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	66837965	rs4930409	T	C	6226.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	66995603	rs3741189	T	C	5679.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	67017445	rs34463980	C	CA	2508.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	67034266	rs2228418	C	A	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	67050292	rs2071007	G	A	8717.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	67052466	rs10896164	G	A	6541.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr11	67057092	rs368498130	GC	G	240.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=6.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.09;ReadPosRankSum=2.010;SOR=4.407;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	67057104	rs11227758	C	G	402.41	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.67;ReadPosRankSum=0.901;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr11	67068859	rs2298815	T	C	8490.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	67071584	rs4244822	C	G	3728.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	67076810	rs3737460	T	G	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	67141148	.	AT	A	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=2.07;ReadPosRankSum=-0.360;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr11	67159412	.	A	AGGCGGG	502.73	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	67177278	rs7122299	G	A	7134.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	67184725	rs61734601	G	A	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	67192332	rs112155556	C	CCA	319.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr11	67226065	rs149455081	C	T	16178.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr11	67257273	rs611697	G	T	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	67257823	rs641081	C	A	8208.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	67258391	rs4930199	A	G	3744.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	67262264	.	T	TGAGTGGGCGA	2982	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=3;HapScore=1;MGOF=17;MMLQ=22;MQ=60.59;NF=33;NR=16;PP=2982;QD=20;SC=GCCTCTCTGGTGAGTGGGCGA;SbPval=0.73;Source=Platypus;TC=61;TCF=38;TCR=23;TR=49;WE=67262272;WS=67262252;set=Platypus	GT:AD:AF:DP	1/1:12,49:0.80:61
chr11	67262282	rs202207490	C	CGA	5435.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	67262289	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=20;MQ=60.47;NF=112;NR=71;PP=2962;QD=20;SC=GGGCGAGTGGGCGAGGGGGCG;SbPval=0.57;Source=Platypus;TC=186;TCF=113;TCR=73;TR=183;WE=67262297;WS=67262272;set=Platypus	GT:AD:AF:DP	0/1:3,183:0.98:186
chr11	67262289	.	G	GCGAGTGGA	6442.73	.	AC=2;AF=1.00;AN=2;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.95;QD=43.83;SOR=1.691;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	67263767	rs618633	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	67264679	rs2276120	C	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	67267043	.	T	A	237	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=26;MQ=57.37;NF=10;NR=2;PP=237;QD=22.6476010456;SC=CATCCATCCATCCATCCATCC;SbPval=0.93;Source=Platypus;TC=15;TCF=10;TCR=5;TR=12;WE=67267051;WS=67267033;set=Platypus	GT:AD:AF:DP	1/0:3,12:0.80:15
chr11	67267636	rs59249357	G	C	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr11	67288594	rs2276118	C	T	8603.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	67351529	rs145589007	A	AG	1165.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr11	67351540	rs1871041	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	67351585	rs4147581	C	G	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	67375162	rs1382089	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	67399735	rs2514021	T	C	8324.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	67399970	rs3765088	C	T	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	67407146	rs2447591	T	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	67412203	rs143278298	C	CCA	1016.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=3.130;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.000;QD=18.16;ReadPosRankSum=-1.250;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:15,41:0.73:56
chr11	67414492	rs948445	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	67430589	rs78402723	A	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	67430762	rs1551886	T	C	8269.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr11	67431038	rs1979375	G	A	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	67431110	rs1979376	G	A	5072.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	67432804	rs2447571	T	C	9744.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr11	67432854	rs6591270	T	C	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	67433708	rs5792424	C	CG	6094.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	67433758	rs1551887	G	A	6962.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	67433869	rs1551888	C	T	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.20;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	67434010	rs1871032	C	T	3397.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	67434416	rs4646823	C	A	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	67564181	rs79260939	G	A	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.76;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	67564197	rs72657419	T	C	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.59;QD=23.73;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	67564293	rs117919932	T	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.21;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	67765163	rs5792426	A	AG	4331.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	67786064	rs11433668	A	AC	3793.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	67789293	rs58160034	G	GC	14999.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	67793615	.	T	G	5658.77	.	AC=2;AF=1.00;AN=2;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr11	67795378	rs11436139	G	GC	11680.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr11	67798381	rs77155493	G	A	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	67799731	rs3133266	C	G	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	67800494	rs3115545	T	G	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	67801282	rs3133267	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	67801496	rs12803743	T	C	8357.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chr11	67801517	rs3115546	G	T	7074.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr11	67803215	rs2075627	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	67803682	.	CAG	C	7216.73	.	AC=2;AF=1.00;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	67804156	rs3133269	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	67814979	rs2471829	G	C	11274.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr11	67842369	rs2512611	C	T	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	67888793	.	G	GCTGCGGCGA	995.73	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	67957518	rs2512606	A	T	7333.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr11	68030015	rs901827	C	T	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	68131167	rs10791978	A	T	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	68170825	rs687482	A	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	68170833	rs686921	G	T	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	68171013	rs545382	T	C	8484.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr11	68173861	rs471966	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	68177318	.	C	CA	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.752;QD=1.24;ReadPosRankSum=-0.026;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr11	68179166	rs689179	A	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	68192690	rs556442	G	A	5919.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	68305521	rs11403965	G	GT	1209.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	68312645	rs10896340	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	68315798	rs10736668	C	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	68331715	rs10501398	C	G	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	68458470	rs1042577	T	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	68476011	rs4930597	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	68480979	rs74926272	A	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	68530318	rs7112615	C	A	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	68548260	rs3019576	C	A	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	68549340	rs2228502	A	G	6389.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	68566647	.	GAAA	G	3043.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.56;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	68566648	.	A	AC	1427	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=19;NR=13;PP=1427;QD=45.5625;SC=CTTCATACGGAAAAATTTCAT;SbPval=0.52;Source=Platypus;TC=35;TCF=21;TCR=14;TR=32;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	1/1:3,32:0.91:35
chr11	68566649	.	AAA	GCT	2559	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=4;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=35;NR=13;PP=2559;QD=20;SC=TTCATACGGAAAAATTTCATC;SbPval=0.69;Source=Platypus;TC=62;TCF=43;TCR=19;TR=48;WE=68566659;WS=68566638;set=Platypus	GT:AD:AF:DP	1/1:14,48:0.77:62
chr11	68566651	.	A	ACGCT	3043.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.56;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	68566839	rs3019603	G	A	3049.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:9,137:0.94:146
chr11	68571312	rs11311321	GA	G	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=1.935;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=1.449;QD=4.99;ReadPosRankSum=-0.863;SOR=0.256;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr11	68658686	rs61887147	C	A	3760.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	68671477	rs1249463	T	C	4682.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	68678962	rs560096	T	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	68700701	rs645436	G	C	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	68703009	rs598255	C	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	68705674	rs17612126	C	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	68705876	rs4378405	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	68748003	rs34847539	T	C	11749.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr11	68773810	rs57545280	AG	A	196.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=3.979;MLEAC=2;MLEAF=1.000;MQ=61.43;MQRankSum=0.253;QD=19.63;ReadPosRankSum=0.126;SOR=1.198;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr11	68777183	rs11228437	G	T	843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.044;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:147,54:0.27:201
chr11	68816370	rs4930642	A	G	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	68821550	rs11604928	C	T	3456.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:54,153:0.74:207
chr11	68821648	rs12285715	G	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.073;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=1.545;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:28,13:0.32:41
chr11	68822739	rs1470892	T	C	25701.77	.	AC=2;AF=1.00;AN=2;DB;DP=973;set=Intersection	GT:AD:AF:DP	1/1:0,969:1.00:969
chr11	68825037	rs3750973	A	C	4886.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	68830226	rs10792015	G	A	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr11	68831293	rs11228472	C	G	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:24,70:0.74:94
chr11	68834831	rs7950657	G	A	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:14,4:0.22:18
chr11	68834968	rs6591368	T	C	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	68835182	rs10750840	T	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr11	68837794	rs61881024	A	G	578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.400;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:110,38:0.26:148
chr11	68838028	rs3829236	C	T	871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-2.295;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:72,48:0.40:120
chr11	68839949	rs896969	C	T	469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=0.215;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:83,31:0.27:114
chr11	68840014	rs3750963	G	A	4016.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:56,177:0.76:233
chr11	68840160	rs3750965	A	G	814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.498;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-2.159;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:190,61:0.24:251
chr11	68840397	rs1466221	T	C	4401.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:54,109:0.67:163
chr11	68840412	rs1466220	C	G	4931.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:62,134:0.68:196
chr11	68840617	rs3750966	T	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:21,29:0.58:50
chr11	68845867	rs7945151	G	A	1645.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:27,61:0.69:88
chr11	68846098	rs4930649	A	G	19246.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,735:1.00:735
chr11	68846519	rs7124310	A	C	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	68847138	rs12804893	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	68847156	rs731974	C	T	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.057;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr11	68849073	rs3829240	G	A	3084.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:45,132:0.75:177
chr11	68851414	rs2376558	T	C	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	68851466	rs896973	G	T	3049.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:76,135:0.64:211
chr11	68853504	rs2290421	C	T	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:67,37:0.36:104
chr11	68855197	rs1123665	T	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr11	68855233	rs1551305	G	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:28,27:0.49:55
chr11	68855363	rs3829241	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr11	68855483	rs1551306	G	A	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.248;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.34;ReadPosRankSum=-0.023;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr11	69063136	rs7117236	C	T	4177.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:89,182:0.67:271
chr11	69063393	rs7103126	T	C	6677.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:161,314:0.66:475
chr11	69063510	rs11539762	G	A	4852.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:122,213:0.64:335
chr11	69063728	rs11228610	G	C	4691.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:136,219:0.62:355
chr11	69462910	rs9344	G	A	4083.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:408,223:0.35:631
chr11	69466115	rs7177	C	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr11	69468187	.	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.618;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr11	69472373	rs11603541	C	G	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:110,214:0.66:324
chr11	69488190	rs117056416	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr11	69588729	rs2073464	G	A	16715.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr11	69589959	rs9666584	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr11	69625511	rs7932320	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	69630978	rs7483837	G	A	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	69924226	rs2509134	C	T	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	69924352	rs11233117	C	G	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.21;ReadPosRankSum=-1.248;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr11	69924476	rs11233122	T	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.884;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=-0.984;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr11	69931876	rs2509128	C	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	69933717	rs2509133	T	C	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:26,10:0.28:36
chr11	69949135	rs55698329	GCC	G	2360.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr11	69949370	rs113704420	T	TA	272.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr11	69954412	rs2509182	A	G	6821.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr11	69957917	rs9666157	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:138,58:0.30:196
chr11	69957940	rs2515251	C	A	4064.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	69962432	rs9666084	A	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.597;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:69,31:0.31:100
chr11	69962642	rs2515245	A	G	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	69970412	rs2509160	G	A	13684.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr11	69970637	rs2515258	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr11	69978358	rs2515264	G	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	69995755	rs34756275	TA	T	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.312;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.491;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.711;QD=1.09;ReadPosRankSum=1.172;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:96,32:0.25:128
chr11	69998440	.	CA	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=1.310;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr11	69999122	rs10160639	A	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	69999252	rs3781663	G	A	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	70001976	rs10751195	A	G	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	70002012	rs11235438	C	T	1658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=-0.176;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:50,97:0.66:147
chr11	70002185	rs34657087	AT	A	1228.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	70002987	rs3781658	G	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	70007311	rs2276066	A	G	12277.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr11	70007392	rs2276067	A	G	20543.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chr11	70007484	rs2276068	C	G	10212.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	70007865	rs2155461	A	C	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	70009720	rs11235460	G	A	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	70013186	rs3781654	G	T	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	70016247	rs35843284	T	TG	2866.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	70016922	rs7127005	C	T	10716.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	70016944	rs3842255	AT	A	14314.73	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr11	70031909	rs7937532	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	70049523	rs1131677	A	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	70171567	.	T	TAC	2043.73	.	AC=1;AF=0.500;AN=2;DP=92;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr11	70200594	rs7943389	C	T	1621.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:94,72:0.43:166
chr11	70208350	rs10751231	G	A	9095.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	70349061	rs7110158	A	G	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	70506206	rs525304	G	T	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr11	70507605	rs3837380	TACACACACACACACACACACACACACACACAC	T,TACACACACACACACACACACACACACAC	4034.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=177;set=Intersection	GT:AF:DP	1/2:0.86,0.14:115
chr11	70544921	rs11237214	G	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr11	70544937	rs7117514	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr11	70644839	rs11237534	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr11	70666765	rs11237599	C	T	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	70672399	rs3019835	G	A	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	70672453	.	C	T	2498.77	.	AC=1;AF=0.500;AN=2;DP=171;set=Intersection	GT:AD:AF:DP	0/1:56,115:0.67:171
chr11	70757620	rs4409861	T	C	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:281,141:0.33:422
chr11	70757705	rs4246962	C	T	8001.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	70761002	.	TA	T	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.287;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=2.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=-1.652;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:131,34:0.21:165
chr11	70766554	rs4077321	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:22,22:0.50:44
chr11	70766664	rs4495913	A	G	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.23;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	70777553	rs10899691	A	C	2082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=485;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.570;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:354,130:0.27:484
chr11	70777566	rs12287441	A	G	1758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.404;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.915;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:323,111:0.26:434
chr11	70777723	rs10793403	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:100,49:0.33:149
chr11	70794485	rs67223333	C	G	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:162,95:0.37:257
chr11	70824326	rs117706585	G	A	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:99,46:0.32:145
chr11	70829858	rs3924047	T	C	1590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=-0.733;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:195,91:0.32:286
chr11	71146248	rs141483210	AAGCAAGGAACAG	A	5055.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:60,126:0.68:186
chr11	71146577	rs909217	G	A	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:122,91:0.43:213
chr11	71146691	rs760241	A	G	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	71146952	rs1792268	G	A	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	71149069	rs949176	A	G	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	71150217	rs2852853	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	71152258	rs736894	C	T	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:46,71:0.61:117
chr11	71152461	rs949177	A	G	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr11	71153459	rs11603330	C	A	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:297,147:0.33:444
chr11	71155153	rs1790334	A	G	20154.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:4,623:0.99:627
chr11	71155171	rs1044482	C	T	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:395,247:0.38:642
chr11	71155265	rs140748737	C	T	5314.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:117,238:0.67:355
chr11	71164471	rs12789751	G	A	700.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.61;ReadPosRankSum=-1.639;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:66,40:0.38:106
chr11	71164544	rs12791871	A	C	191.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:23,11:0.32:34
chr11	71166060	rs2276359	T	TG	1181.73	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:89,62:0.41:151
chr11	71166337	rs1790373	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	71169547	rs2276360	G	C	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:213,107:0.33:320
chr11	71169648	rs2276361	A	G	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:44,30:0.41:74
chr11	71169694	rs118134329	G	T	547.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr11	71174452	rs2276362	A	G	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:391,195:0.33:586
chr11	71174553	rs1629220	C	T	5658.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:124,263:0.68:387
chr11	71174589	rs1629304	T	C	5598.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	71183474	rs2282621	C	T	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.017;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:111,60:0.35:171
chr11	71183477	rs2282620	C	T	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.932;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:113,56:0.33:169
chr11	71183645	rs2282619	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	71184190	rs7935125	C	A	1178.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:120,58:0.33:178
chr11	71184498	rs2276358	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr11	71184678	rs7950441	A	C	6449.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:1,248:1.00:249
chr11	71185479	rs2276354	T	C	10125.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr11	71185518	rs2186778	T	C	12613.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr11	71187061	rs2017686	C	G	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:46,110:0.71:156
chr11	71188361	rs68009340	TCACA	T	9318.73	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:177,238:0.57:415
chr11	71188502	rs3794065	G	A	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr11	71189436	rs2276353	T	C	5888.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	71192529	rs368250598	AT	A	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.21;ReadPosRankSum=1.593;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:56,43:0.43:99
chr11	71192602	rs3814731	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	71192851	rs3814734	A	G	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	71193135	rs7949129	G	C	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr11	71259997	rs61746411	G	T	7165.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:177,316:0.64:493
chr11	71260243	rs2664	T	C	18300.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,713:1.00:713
chr11	71260296	rs2663	G	A	9482.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	71276909	.	G	A	717	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=5;HapScore=2;MGOF=28;MMLQ=17;MQ=50.11;NF=47;NR=8;PP=717;QD=13.6685675009;SC=GCTCCAAGGGGGGCTGTGGCT;SbPval=1.0;Source=Platypus;TC=152;TCF=98;TCR=54;TR=55;WE=71276917;WS=71276899;set=Platypus	GT:AD:AF:DP	1/0:97,55:0.36:152
chr11	71276909	.	G	GGGCTGTGGCTCCTGTGGGGGCTCCAAGGGA	2102.73	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.89;QD=67.83;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	71279995	rs200834593	C	T	530.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.140;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=18.634;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-5.839;QD=1.42;ReadPosRankSum=-0.651;SOR=2.008;set=HC	GT:AD:AF:DP	0/1:335,38:0.10:373
chr11	71280000	.	T	G	547.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=17.089;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-5.953;QD=1.55;ReadPosRankSum=-1.753;SOR=1.920;set=HC	GT:AD:AF:DP	0/1:318,36:0.10:354
chr11	71290670	rs2015464	C	G	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.869;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-0.737;QD=2.91;ReadPosRankSum=-0.763;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:106,29:0.21:135
chr11	71290740	rs4081429	A	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-4.516;QD=0.34;ReadPosRankSum=1.214;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:287,42:0.13:329
chr11	71498500	rs12786196	G	T	452.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	71498562	rs12786239	G	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.67;QD=43.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	71498567	rs12788471	A	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.67;QD=43.24;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	71498591	rs12270466	C	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.01;QD=43.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	71498601	rs12283300	G	T	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.78;QD=43.34;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	71498648	rs12277291	A	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	71498671	rs12283346	G	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	71498694	rs11234942	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	71507022	rs374595711	G	A	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:31,31:0.50:62
chr11	71507232	rs113587125	C	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:178,136:0.43:314
chr11	71507261	rs111708284	A	G	1806.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:143,93:0.39:236
chr11	71634606	rs11446262	G	GT	309.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=10.395;MLEAC=2;MLEAF=1.000;MQ=60.32;MQRankSum=0.492;QD=12.39;ReadPosRankSum=-0.719;SOR=3.236;set=HC	GT:AD:AF:DP	1/1:3,22:0.88:25
chr11	71668362	rs3216157	CT	C	3531.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	71701523	rs2276384	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	71707465	rs1055452	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	71712175	rs1892919	G	A	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	71714526	rs949324	G	C	12873.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	71714526	.	GGT	CGG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=155;NR=96;PP=2947;QD=20;SC=GACCAGGTGAGGTCAGCATCG;SbPval=0.55;Source=Platypus;TC=259;TCF=159;TCR=100;TR=251;WE=71714536;WS=71714516;set=Platypus	GT:AD:AF:DP	1/1:8,251:0.97:259
chr11	71714528	rs949323	T	G	12873.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=1.129;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr11	71715215	rs2845857	C	G	20471.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,456:1.00:456
chr11	71715218	rs2852365	T	C	20528.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,462:1.00:462
chr11	71719619	rs2155145	G	T	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	71727422	rs1057992	A	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	71728543	rs34393610	G	GA	1941.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:21,104:0.83:125
chr11	71728908	rs11278712	AGTCAAC	A	3107.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	71729656	rs949325	A	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	71730715	rs2298456	T	A	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	71733519	rs10128658	C	T	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	71734211	rs2298457	T	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	71740378	rs35948003	A	AAC	8428.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	71740521	rs1939247	A	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	71797422	rs597513	T	A	12642.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr11	71849741	rs652197	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	71883540	rs633738	G	A	6243.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	71929526	rs651646	T	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr11	71932120	rs2508202	G	C	7208.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,318:0.99:320
chr11	71936225	rs144989913	GGCTCCTTGCGGGCTGGCGTGGACCGGGA	G	682.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr11	72281818	rs380126	A	G	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	72281884	rs433640	C	T	14950.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr11	72282039	rs409512	T	C	30448.77	.	AC=2;AF=1.00;AN=2;DB;DP=1175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,1174:1.00:1174
chr11	72289176	rs379276	C	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	72289291	rs1135029	T	C	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr11	72290199	rs11605051	G	A	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	72291477	rs56350365	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	72291883	rs644698	C	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	72291927	rs577536	T	C	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	72292167	rs3781939	G	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.54;SOR=2.694;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	72292176	rs7108477	C	T	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.32;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	72292185	rs3781938	C	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	72292353	rs57803658	G	GA	5875.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr11	72292860	rs376724	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	72293039	rs379638	G	A	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	72293079	rs414178	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	72293602	rs4944557	A	G	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	72294714	rs408269	C	T	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;MQ=61.07;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	72294734	rs56267207	A	AC	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	72295502	rs366711	T	C	16115.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr11	72295906	rs452228	A	G	13838.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr11	72296039	rs907850	G	T	5427.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	72296700	rs424234	C	T	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	72307528	.	T	TCA	1163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.209;ClippingRankSum=0.000;DP=194;ExcessHet=3.0103;FS=3.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=4.199;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:90,73:0.45:163
chr11	72316148	rs78279319	C	G	2307.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr11	72326210	rs572421	A	G	2572.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:74,116:0.61:190
chr11	72342310	rs4944591	G	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr11	72354028	rs907853	C	A	2934.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.100;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=-0.273;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:78,136:0.64:214
chr11	72361883	rs341038	T	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	72361893	rs72349218	TCCCTGAC	T	3034.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	72361920	.	TACACACACACACACACAC	T	2216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.208;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=-0.176;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:26,76:0.75:102
chr11	72363759	rs12146545	G	A	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:89,159:0.64:248
chr11	72366929	rs907858	C	A	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:71,93:0.57:164
chr11	72367102	rs907857	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr11	72368986	rs3781916	T	G	2602.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:65,115:0.64:180
chr11	72396800	rs12802369	A	G	4736.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:121,217:0.64:338
chr11	72396990	rs12805218	G	A	4880.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:103,218:0.68:321
chr11	72399451	rs7944294	A	G	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.457;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.948;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:351,99:0.22:450
chr11	72399607	rs2306609	G	A	2708.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:60,116:0.66:176
chr11	72404003	rs11235567	A	G	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	72404958	rs12276972	A	C	4970.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	72405868	rs2306608	C	T	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:42,79:0.65:121
chr11	72407770	rs2306612	G	C	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:31,92:0.75:123
chr11	72407977	rs11602233	C	A	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:25,75:0.75:100
chr11	72408055	rs56200889	G	C	1253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-1.770;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:148,73:0.33:221
chr11	72408657	rs2291289	C	T	5866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-0.793;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:192,278:0.59:470
chr11	72409189	rs12575364	C	T	787.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:59,40:0.40:99
chr11	72411082	rs7110501	T	C	2555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.29;ReadPosRankSum=-2.642;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:86,122:0.59:208
chr11	72411099	rs10898866	C	T	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:91,121:0.57:212
chr11	72412675	rs11235574	A	G	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:28,76:0.73:104
chr11	72414189	rs3765105	G	A	1833.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:26,80:0.75:106
chr11	72416732	rs4598696	GG	CT	1884.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;JOINED;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr11	72465651	rs35094163	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	72528973	rs891655	C	T	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	72532569	rs1864651	G	T	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	72532621	rs1864652	T	G	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	72532708	rs11235603	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	72533711	rs4944806	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	72534798	.	C	G	2188.77	.	AC=1;AF=0.500;AN=2;DP=378;set=Intersection	GT:AD:AF:DP	0/1:255,122:0.32:377
chr11	72538141	rs3862793	T	C	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	72540225	rs891657	G	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr11	72552385	.	CAA	C	105.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;ClippingRankSum=-0.000;DP=28;ExcessHet=3.0103;FS=6.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.62;ReadPosRankSum=-0.282;SOR=2.807;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	72554407	rs3217361	A	AGGG	7077.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=608;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=-1.936;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:398,196:0.33:594
chr11	72598704	rs7129851	G	A	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	72788823	rs6592510	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=-1.756;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:136,48:0.26:184
chr11	72945341	rs2511241	C	T	8713.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:177,383:0.68:560
chr11	72946020	rs1783596	C	T	6873.77	.	AC=1;AF=0.500;AN=2;DB;DP=1112;set=Intersection	GT:AD:AF:DP	0/1:715,394:0.36:1109
chr11	73071006	rs75032401	C	T	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:139,71:0.34:210
chr11	73357710	rs3741144	G	A	3820.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:58,168:0.74:226
chr11	73362766	rs670811	C	T	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	73364368	rs6592527	C	G	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	73364629	rs7942217	T	A	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	73364673	rs7952228	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	73366697	rs2008734	G	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr11	73366751	rs3741147	T	G	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.414;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=0.547;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:174,75:0.30:249
chr11	73371942	rs2272248	A	C	2234.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:217,115:0.35:332
chr11	73389112	rs3825003	C	T	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr11	73390560	rs200584614	A	ATAT	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr11	73390772	rs71469461	GAA	G	5433.73	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:45,137:0.75:182
chr11	73441772	rs2037709	A	C	2872.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	73498933	rs1792174	T	G	347.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,21:0.40:52
chr11	73528717	rs1670564	G	C	766.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=0.058;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:78,45:0.37:123
chr11	73536698	rs11235922	A	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr11	73575320	rs17132411	T	C	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:167,78:0.32:245
chr11	73610110	rs1670558	A	C	486.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr11	73611349	rs2067912	G	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:136,74:0.35:210
chr11	73669310	rs10793068	C	A	2337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.390;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:361,146:0.29:507
chr11	73669334	rs10793069	A	C	2487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=1.945;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:411,164:0.29:575
chr11	73670645	rs653263	T	C	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=1.689;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.616;QD=4.32;ReadPosRankSum=0.777;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:186,72:0.28:258
chr11	73670793	rs112136608	TTATTA	T	1673.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.008;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=5.307;QD=8.41;ReadPosRankSum=-0.524;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:145,54:0.27:199
chr11	73675810	.	CTGTGTGTGTGTG	C	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.81;ReadPosRankSum=-0.000;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr11	73679219	rs2306817	G	C	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr11	73679232	rs2306818	A	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr11	73681090	rs2306819	C	T	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:480,239:0.33:719
chr11	73681135	rs72982975	G	A	4282.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:478,253:0.35:731
chr11	73685896	.	A	AGAAAGAGGGAAGGTGGTAGGTAAAGGAGCGGAAGGAAGAGGTGGG	774.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.14;ReadPosRankSum=-0.201;SOR=1.692;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chr11	73686859	rs10535527	ACTT	A	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr11	73689104	rs660339	G	A	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:244,141:0.37:385
chr11	73712708	rs3837411	G	GTC	280.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;MQ=60.58;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr11	73715542	rs2075577	G	A	5339.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	73715666	rs2734828	G	A	1032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=2.203;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:136,65:0.32:201
chr11	73717024	rs1726747	AT	TC	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	73717074	rs11235972	G	A	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:39,67:0.63:106
chr11	73717121	rs2075576	C	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:72,172:0.70:244
chr11	73717254	rs1800006	A	G	6220.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:134,289:0.68:423
chr11	73785326	rs4453265	T	C	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	73789777	rs1726735	T	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	73796608	rs1095424	T	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	73796917	rs826058	C	T	424.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.144;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.009;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:74,25:0.25:99
chr11	73803389	rs7941525	C	T	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr11	73803398	rs1790400	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr11	73806443	rs11235995	C	T	2797.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr11	73824724	.	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.212;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr11	73825503	rs10898957	T	C	4742.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:115,218:0.65:333
chr11	73833944	rs60834556	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr11	73833957	rs145193996	C	CTGTCTGGCAAGTGA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	73844434	rs61901246	A	G	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr11	73850973	rs11236018	C	G	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr11	73872701	rs147282233	G	GA	275.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,16:0.64:25
chr11	73881580	rs3814724	T	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	73882260	rs1726746	T	G	5055.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr11	73947080	rs2302508	C	G	4214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.47;ReadPosRankSum=-0.759;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:115,198:0.63:313
chr11	73964689	rs3741133	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr11	73978243	rs3741132	G	A	7519.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:154,333:0.68:487
chr11	73984657	.	G	GA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=1.109;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:124,27:0.18:151
chr11	73988167	rs2282488	C	T	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:110,144:0.57:254
chr11	73999993	rs36086552	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-1.356;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:12,11:0.48:23
chr11	74000249	rs11419151	T	TA	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.05;ReadPosRankSum=-1.861;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr11	74015599	rs10898976	G	C	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:6,30:0.83:36
chr11	74022429	rs7944333	C	T	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:225,101:0.31:326
chr11	74047683	rs1044782	A	G	9185.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:216,438:0.67:654
chr11	74049569	rs3867270	A	G	4421.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:149,218:0.59:367
chr11	74053547	rs592644	C	T	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.051;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=0.637;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:26,53:0.67:79
chr11	74054346	rs641271	G	T	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr11	74057647	rs519083	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr11	74057931	rs3741130	C	T	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:97,136:0.58:233
chr11	74079475	rs11236077	A	G	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:67,119:0.64:186
chr11	74085384	rs61288268	C	T	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr11	74085420	rs35170680	T	G	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,74:0.70:106
chr11	74109166	rs12049823	A	G	3508.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-0.857;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:96,161:0.63:257
chr11	74109342	rs904155	C	T	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	74110353	rs515924	A	G	1129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.259;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=-0.169;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:22,54:0.71:76
chr11	74110542	rs676103	T	C	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr11	74203308	rs586088	T	A	1761.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:200,100:0.33:300
chr11	74204198	rs10736797	G	A	11349.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr11	74204269	rs10736798	T	G	11185.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr11	74204727	rs4944895	A	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	74207856	rs643738	G	A	7336.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	74208029	rs655025	C	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:115,51:0.31:166
chr11	74208214	rs656506	G	A	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=6.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.432;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:93,33:0.26:126
chr11	74208592	rs657339	G	T	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.081;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr11	74303841	rs2298572	T	C	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.87;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	74303841	.	TCTGTCTGCT	CCTGTCTGCC,CCTGTCTGCT	1534	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=37,69;NR=54,116;PP=1534,873;QD=17.4447019216;SC=GCCTTGACCCTCTGTCTGCTT;SbPval=0.38;Source=Platypus;TC=186;TCF=69;TCR=117;TR=91,185;WE=74303858;WS=74303831;set=Platypus	GT:AF:DP	0/1:0.49:186
chr11	74303850	rs2298573	T	C	2304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=6.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.59;ReadPosRankSum=1.328;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:59,99:0.63:158
chr11	74329615	rs4944052	T	C	10208.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	74330980	rs10501417	A	G	5329.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	74347434	rs4944920	G	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr11	74379809	rs56330626	G	GT	1550.73	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:29,80:0.73:109
chr11	74407676	rs3819242	C	T	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	74408224	rs35620595	C	A	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr11	74408384	rs10751240	C	T	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	74408619	rs3741124	C	G	22778.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	1/1:0,860:1.00:860
chr11	74408633	rs3741123	A	G	22107.77	.	AC=2;AF=1.00;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	1/1:1,860:1.00:861
chr11	74408740	rs3741122	C	T	1952.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:270,119:0.31:389
chr11	74419357	rs1944937	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:45,25:0.36:70
chr11	74419378	rs7948433	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:57,26:0.31:83
chr11	74429987	rs12417156	G	A	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr11	74431277	rs4944943	T	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.046;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.809;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr11	74441796	rs11236234	T	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=-3.088;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:32,44:0.58:76
chr11	74645032	rs140602440	G	GTTCA	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr11	74660504	rs1282689	A	C	10538.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	74660631	rs1282690	G	A	14392.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr11	74674612	rs71848982	GTTTA	G	493.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr11	74674616	rs562581	A	G	413.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr11	74676794	rs514534	G	C	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	74700896	rs681566	A	G	3335.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:70,150:0.68:220
chr11	74705696	rs544115	T	C	14484.77	.	AC=1;AF=0.500;AN=2;DB;DP=1059;set=Intersection	GT:AD:AF:DP	0/1:383,672:0.64:1055
chr11	74800541	.	G	A	1892.77	.	AC=1;AF=0.500;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	0/1:73,90:0.55:163
chr11	74862356	rs2851069	T	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=2.156;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:89,40:0.31:129
chr11	74862391	rs1944612	A	G	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	74877004	rs3740839	G	A	2099.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr11	74880856	rs7125268	C	A	2930.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:89,133:0.60:222
chr11	74904362	rs1621378	T	C	14405.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr11	74992181	rs145394042	G	A	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:375,163:0.30:538
chr11	74995350	rs647630	C	T	8018.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	75139472	rs187770079	C	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.840;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:70,14:0.17:84
chr11	75141630	rs11236430	T	C	2636.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:42,117:0.74:159
chr11	75141762	rs3018101	T	C	1777.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:28,79:0.74:107
chr11	75152243	rs571353	C	T	8544.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr11	75154067	rs532454	C	T	4752.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	75160213	rs473462	G	A	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	75160575	rs518611	G	A	11458.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	75167704	rs1793410	T	C	13091.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr11	75188569	rs1790149	C	T	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	75277628	rs584961	A	G	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	75277992	rs651581	C	T	11707.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr11	75278040	rs35462148	G	GTCC	8359.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:3,190:0.98:193
chr11	75428958	rs554202	A	G	9415.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	75430950	rs650861	A	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	75501207	rs10899123	C	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr11	75501852	rs2510635	A	G	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	75507234	rs12222542	A	C	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:5,22:0.81:27
chr11	75511572	rs3060	T	C	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:80,136:0.63:216
chr11	75526481	rs7118567	CC	AG	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;JOINED;set=Intersection	GT:AD:AF:DP	0/1:32,66:0.67:98
chr11	75852448	rs636420	C	T	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:9,38:0.81:47
chr11	75902571	rs2508779	A	G	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	75905800	rs1533767	G	A	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr11	75907381	rs78696074	T	C	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr11	75917175	rs112594021	CT	C	336.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:41,19:0.32:60
chr11	75917189	rs1717626	G	C	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	75917334	rs1879633	T	C	17856.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,690:1.00:690
chr11	76207633	rs10899226	G	A	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	76207709	rs72930511	G	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	76237725	rs11363199	CA	C	3515.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	76257215	rs3753051	T	C	7597.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr11	76370792	rs4304809	A	G	10296.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr11	76372052	rs3740779	A	G	10367.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr11	76372418	rs3740778	T	C	7051.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr11	76372564	rs10751259	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	76406341	rs10751260	G	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	76423664	rs11236891	C	A	332.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr11	76423840	rs12294685	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.496;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=1.477;SOR=0.964;set=HC	GT:AD:AF:DP	0/1:106,36:0.25:142
chr11	76423897	rs73501507	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.134;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:79,27:0.25:106
chr11	76427674	rs10899265	G	C	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:254,151:0.37:405
chr11	76427731	rs10751261	T	C	15312.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr11	76427823	rs11236900	T	C	4477.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:464,245:0.35:709
chr11	76429160	rs10899266	T	A	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.149;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=4.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.49;ReadPosRankSum=2.001;SOR=0.185;set=HC	GT:AD:AF:DP	0/1:17,27:0.61:44
chr11	76430529	.	C	G	2962	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=23;MQ=57.45;NF=53;NR=18;PP=2962;QD=20;SC=GTCTGCACGACGAGCATGCCT;SbPval=0.48;Source=Platypus;TC=73;TCF=55;TCR=18;TR=71;WE=76430554;WS=76430517;set=Platypus	GT:AD:AF:DP	1/1:2,71:0.97:73
chr11	76430585	.	C	T	1509	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=4;HapScore=1;MGOF=18;MMLQ=24;MQ=58.73;NF=34;NR=17;PP=1509;QD=30.2700237754;SC=TCAAGGCATTCGGGGTCTGCA;SbPval=0.68;Source=Platypus;TC=157;TCF=99;TCR=58;TR=51;WE=76430605;WS=76430575;set=Platypus	GT:AD:AF:DP	0/1:106,51:0.32:157
chr11	76430597	.	A	G	1509	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=18;MMLQ=23;MQ=59.46;NF=36;NR=22;PP=1509;QD=26.6167450439;SC=GGGTCTGCACAAGGAGCACAC;SbPval=0.61;Source=Platypus;TC=184;TCF=111;TCR=73;TR=58;WE=76430605;WS=76430575;set=Platypus	GT:AD:AF:DP	0/1:126,58:0.32:184
chr11	76430597	.	A	AAGGAGCATACCTACCTGAGCGCGTGCACCCCTGCCCCGGACCCCCACTCAAGGCATTTGGGGTCTGCACG	2249.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.319;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=18.743;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-5.083;QD=15.52;ReadPosRankSum=-1.028;SOR=2.405;set=HC	GT:AD:AF:DP	0/1:121,24:0.17:145
chr11	76506572	rs1149620	T	A	4418.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr11	76507692	rs1149621	T	A	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	76579429	rs113895939	C	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.74;MQRankSum=2.522;QD=1.72;ReadPosRankSum=1.254;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr11	76579431	rs111732185	C	G	198.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.660;QD=10.47;ReadPosRankSum=1.200;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr11	76579433	rs11236990	C	G	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=43.05;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	76579435	rs10793202	C	G	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=42.45;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	76637651	rs4379869	G	A	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	76637680	rs4479014	G	A	8550.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr11	76637730	rs4604914	C	G	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr11	76637785	rs4457775	G	A	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	76668478	rs4945125	C	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	76687399	rs1517909	A	C	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	76687448	rs1517908	A	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	76701365	rs3824889	G	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	76701606	rs3740767	G	A	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	76705180	rs56841188	CT	C	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:4,28:0.88:32
chr11	76709795	rs11237053	G	A	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.806;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=0.558;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:95,28:0.23:123
chr11	76727866	.	G	GT	170.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DP=277;ExcessHet=3.0103;FS=1.525;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.977;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:189,41:0.18:230
chr11	76751541	rs11292198	CT	C	27900.73	.	AC=2;AF=1.00;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	1/1:0,754:1.00:754
chr11	76751584	rs11292199	CT	C	31203.73	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr11	76751587	rs34153015	G	A	31585.77	.	AC=2;AF=1.00;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr11	76751603	rs11292200	CT	C	30179.73	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr11	76799004	rs7121748	T	C	9819.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr11	76804629	rs3832735	AGTCTGTGTCTGTCAC	A	2671.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.086;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=3.343;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.114;QD=7.07;ReadPosRankSum=-0.277;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:291,87:0.23:378
chr11	76814110	rs2233549	G	A	2847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=1.225;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.535;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:431,179:0.29:610
chr11	76827223	rs11606456	G	C	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:112,178:0.61:290
chr11	76827360	rs11604536	A	G	3025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.878;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-0.905;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:100,144:0.59:244
chr11	76853783	rs1052030	T	C	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	76854001	rs3740760	C	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,42:0.38:111
chr11	76858756	rs12279716	C	T	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=0.818;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:153,61:0.29:214
chr11	76859069	rs4074664	C	T	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:40,80:0.67:120
chr11	76874149	.	CAT	C	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.405;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=4.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.163;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:49,8:0.14:57
chr11	76893280	rs57741157	A	AG	2561.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	76918322	rs2276291	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:98,42:0.30:140
chr11	76918497	rs2276290	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:109,52:0.32:161
chr11	76919468	rs1320703	A	T	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.96;ReadPosRankSum=-2.431;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:67,51:0.43:118
chr11	76919478	rs948962	C	A	1907.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.45;ReadPosRankSum=0.205;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:79,53:0.40:132
chr11	76919619	rs948961	G	A	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=-1.012;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:50,33:0.40:83
chr11	76919629	rs948960	C	T	1115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.538;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:56,31:0.36:87
chr11	76919865	rs1320702	T	A	2078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.057;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:366,139:0.28:505
chr11	76920003	rs11237122	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.892;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr11	76924130	rs2276289	A	T	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	76925075	rs948959	G	T	5322.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	76927876	rs142202405	ATTC	A	592.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	76928149	rs2282576	A	G	5403.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	76944015	rs4945161	G	A	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	76954788	rs34784710	T	TA	5922.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	76954812	rs11237145	T	C	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	76954833	rs11237146	G	A	6931.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	76996263	.	C	T	1631.77	.	AC=1;AF=0.500;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	0/1:49,74:0.60:123
chr11	77051683	rs2725832	G	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:85,47:0.36:132
chr11	77051820	rs51500	C	T	4262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.058;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.16;ReadPosRankSum=0.547;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:99,202:0.67:301
chr11	77060169	rs34167967	C	CA	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.091;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.022;QD=4.79;ReadPosRankSum=-0.846;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr11	77069746	rs2250647	A	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr11	77069790	rs2250639	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.679;SOR=1.557;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr11	77090211	rs562939	T	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	77314503	rs2032395	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr11	77335982	rs2013296	C	A	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chr11	77389020	rs12286317	T	C	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-1.262;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:144,58:0.29:202
chr11	77389238	rs10567840	CTT	C,CT	1412.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.868;SOR=0.446;set=HC	GT:AD:AF:DP	1/2:6,47,35:0.53,0.40:88
chr11	77394600	rs7925289	G	A	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.128;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:14,9:0.39:23
chr11	77409832	rs10899399	C	T	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr11	77412646	rs72947646	G	A	3607.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:80,158:0.66:238
chr11	77412851	rs7950873	A	G	2528.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:305,142:0.32:447
chr11	77531810	rs10751277	T	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	77553638	rs585721	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	77583376	rs588217	G	A	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,37:0.35:105
chr11	77583476	rs668701	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr11	77595642	rs608389	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,34:0.30:112
chr11	77595717	rs658398	C	T	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=-0.582;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:233,105:0.31:338
chr11	77605501	rs1793336	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-3.480;QD=6.44;ReadPosRankSum=0.000;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr11	77611597	.	C	CT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=2.918;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.481;QD=0.32;ReadPosRankSum=0.235;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:245,46:0.16:291
chr11	77629132	rs60400274	A	AT	4903.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	77635882	rs7119720	A	C	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	77639466	rs11607043	A	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.34;QD=31.24;SOR=2.571;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	77639511	rs11607479	T	A	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.41;QD=33.42;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	77652420	rs112337042	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	77671217	rs72939500	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	77671544	rs2305317	T	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	77672189	rs11370501	T	TA,TAA	1793.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.615;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.922;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.32;MQRankSum=0.519;QD=19.50;ReadPosRankSum=0.610;SOR=0.399;set=HC	GT:AD:AF:DP	1/2:4,27,61:0.29,0.66:92
chr11	77674421	rs200349657	C	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	77692775	rs17825404	G	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr11	77692785	rs201089096	TTTTATTTA	T	900.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr11	77698524	rs7938133	C	T	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	77698651	rs6592756	T	C	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	77698694	rs11606909	T	C	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	77702033	rs2276441	T	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	77705734	rs3832725	C	CG	8030.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr11	77734209	rs11237362	T	C	2646.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=3.269;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:288,151:0.34:439
chr11	77775466	rs545869	C	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chr11	77790653	rs534418	T	C	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr11	77790863	rs499799	C	G	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:143,71:0.33:214
chr11	77811990	rs1263505	T	C	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	77813941	rs640016	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr11	77813997	rs35218171	CA	C	140.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;MQRankSum=0.612;QD=10.02;ReadPosRankSum=2.290;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr11	77820670	rs1783515	T	C	1961.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.25;ReadPosRankSum=0.838;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:19,53:0.74:72
chr11	77820673	rs1789032	T	C	1954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.380;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.18;ReadPosRankSum=0.834;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:17,50:0.75:67
chr11	77823557	rs624350	G	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:20,10:0.33:30
chr11	77825064	rs572693	A	G	6975.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:158,321:0.67:479
chr11	77825275	rs10899440	A	G	1075.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:145,60:0.29:205
chr11	77825508	rs678277	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:7,28:0.80:35
chr11	77825642	rs653721	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	77825697	rs653368	C	T	866.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr11	77830465	rs374346497	TTTTTTTTAA	T	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.437;QD=21.94;ReadPosRankSum=0.299;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr11	77832076	rs518624	T	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	77832333	rs376124604	CT	C	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.371;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.281;QD=2.77;ReadPosRankSum=-0.025;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:16,11:0.41:27
chr11	77834994	rs498278	G	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr11	77838373	rs59662312	TA	T	1168.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,61:0.97:63
chr11	77850517	rs10793289	C	A	4697.77	.	AC=1;AF=0.500;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	0/1:418,256:0.38:674
chr11	77909014	rs2510044	G	A	13712.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	77920457	rs2256051	G	A	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	77920563	rs2510045	G	T	19297.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr11	77920808	rs75766028	GC	AA	11501.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;JOINED;set=Intersection	GT:AD:AF:DP	0/1:421,309:0.42:730
chr11	77920863	rs2512527	C	A	15260.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.889;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.20;ReadPosRankSum=0.153;SOR=0.172;set=HC	GT:AD:AF:DP	1/1:2,559:1.00:561
chr11	77920930	rs2511188	A	G	8587.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.88;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	77921348	rs75370284	G	A	7648.77	.	AC=1;AF=0.500;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	0/1:475,370:0.44:845
chr11	77921527	rs2512526	G	C	19620.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:1,722:1.00:723
chr11	77924544	rs2450139	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	77924607	rs901105	A	C	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	77924656	rs72075084	TTCTAAG	T	12047.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	77924870	rs2450138	C	T	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	77930345	rs2450122	T	C	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	77930499	rs901104	G	A	6220.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	77931346	rs901103	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	77936064	rs1385601	A	C	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	77936166	rs1385600	A	G	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	77937800	rs2248407	G	A	10980.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr11	78128775	rs11237488	C	T	5924.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:244,283:0.54:527
chr11	78128797	rs881338	C	T	13903.73	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	78180179	rs11237514	A	G	2091.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:95,109:0.53:204
chr11	78180507	rs10899517	AA	TC	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;JOINED;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr11	78189558	rs4944202	T	C	648.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=5.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.46;ReadPosRankSum=1.155;SOR=1.536;set=HC	GT:AD:AF:DP	0/1:33,29:0.47:62
chr11	78204073	rs66546995	CACAGAT	C	2795.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr11	78204299	rs56279811	T	TA	1060.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:43,46:0.52:89
chr11	78204380	rs4474465	C	T	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr11	78277157	rs140866681	A	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:93,81:0.47:174
chr11	78277277	rs10751296	A	G	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:81,115:0.59:196
chr11	78279790	rs10501429	T	G	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:56,77:0.58:133
chr11	78372536	rs2277277	G	A	1698.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:90,86:0.49:176
chr11	78437182	rs689369	G	A	5167.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:279,256:0.48:535
chr11	78440736	rs512004	G	C	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr11	78443235	rs1790557	C	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	78489793	rs1573527	C	A	8566.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=1.799;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	78489798	rs1573528	C	A	8496.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.18;SOR=1.855;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	78516318	.	CTT	C	792	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=4;HapScore=2;MGOF=83;MMLQ=29;MQ=57.41;NF=3;NR=1;PP=792;QD=205.25;SC=ACCCATGCTTCTTCTCCCCCT;SbPval=0.58;Source=Platypus;TC=20;TCF=16;TCR=4;TR=4;WE=78516327;WS=78516308;set=Platypus	GT:AD:AF:DP	1/0:16,4:0.20:20
chr11	78516320	.	T	TCTCCCCACCCTCCACACCCCACCCCTCATTCTTCCCCACCCCCACTCCTCCTCCACCCACCCTTC	2644.73	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=440.79;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	78567367	rs505093	T	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	78602525	rs10736817	C	A	824.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr11	78776192	rs7130258	T	C	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr11	79133292	.	T	TACACAC	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.80;ReadPosRankSum=-2.537;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr11	82561156	.	A	AAT	115	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=5;HapScore=2;MGOF=0;MMLQ=21;MQ=62.65;NF=1;NR=2;PP=115;QD=42.0;SC=GAAAAGAAAAAATATATATAT;SbPval=0.42;Source=Platypus;TC=6;TCF=1;TCR=5;TR=3;WE=82561164;WS=82561146;set=Platypus	GT:AD:AF:DP	1/0:3,3:0.50:6
chr11	82752734	rs34023989	TA	T	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.071;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.794;QD=1.57;ReadPosRankSum=-1.056;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:84,33:0.28:117
chr11	82923945	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=5.758;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-2.786;SOR=0.157;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr11	82952108	rs625102	T	C	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr11	82959338	rs202087105	TACACACAC	T	933.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.77;ReadPosRankSum=2.044;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:13,28:0.68:41
chr11	82968164	rs628223	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr11	82968418	rs657824	G	A	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=1.495;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr11	82973045	rs645954	C	T	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:50,60:0.55:110
chr11	82984985	rs543562	T	A	801.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:80,53:0.40:133
chr11	82985589	.	A	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.72;ReadPosRankSum=2.100;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr11	82996986	rs494791	A	C	7246.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:368,347:0.49:715
chr11	83180169	rs11464149	C	CA	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.862;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.991;QD=0.72;ReadPosRankSum=0.683;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:142,39:0.22:181
chr11	83585289	rs144508115	G	GGGAAGGAAGGAAGGAGAGAGGGAA	1544.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=67.16;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	83585584	rs75948804	TA	AT	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.393;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.113;QD=14.02;ReadPosRankSum=-0.207;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:28,21:0.43:49
chr11	83810113	rs3750917	T	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	83878075	rs1869472	G	A	3759.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.063;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr11	83962251	rs7933566	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	84822798	rs601375	T	G	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.216;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.523;SOR=0.366;set=HC	GT:AD:AF:DP	0/1:35,34:0.49:69
chr11	85339542	rs575050	G	T	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	85374467	.	GA	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=3.840;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=0.27;ReadPosRankSum=1.601;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:254,63:0.20:317
chr11	85418591	rs3069561	AACAG	A	2845.73	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:88,75:0.46:163
chr11	85419193	rs290197	C	T	1214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.651;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:46,63:0.58:109
chr11	85419196	rs201488817	C	CA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.138;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:90,20:0.18:110
chr11	85428419	rs113185096	T	C	1095.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:44,48:0.52:92
chr11	85432040	.	CA	C	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.183;QD=4.28;ReadPosRankSum=0.178;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:57,39:0.41:96
chr11	85435001	rs34653849	T	TA	458.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr11	85435730	rs550404	C	T	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:196,182:0.48:378
chr11	85436352	rs641393	G	A	3411.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:177,163:0.48:340
chr11	85436394	rs556669	T	C	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:115,99:0.46:214
chr11	85436500	rs580459	T	C	1619.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:76,75:0.50:151
chr11	85436699	rs598346	A	G	11760.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr11	85436868	rs597480	G	C	3830.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:190,185:0.49:375
chr11	85437896	rs491867	A	G	4551.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:333,241:0.42:574
chr11	85447611	rs680498	T	C	1624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=2.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.69;ReadPosRankSum=0.805;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:102,85:0.45:187
chr11	85456703	rs647912	T	C	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:78,88:0.53:166
chr11	85609806	rs10501601	A	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr11	85610109	rs725459	G	C	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:55,61:0.53:116
chr11	85622518	rs140532988	C	CA	31.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr11	85623607	rs11608136	T	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr11	85626569	rs60185300	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:38,38:0.50:76
chr11	85627108	rs7927222	T	C	4762.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:206,232:0.53:438
chr11	85671702	rs618679	A	C	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:46,41:0.47:87
chr11	85685574	rs4944550	C	T	1103.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr11	85692061	rs17817690	A	G	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:32,34:0.52:66
chr11	85692342	rs2508688	A	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:44,41:0.48:85
chr11	85714288	rs7951988	T	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	85722238	rs57263198	G	GA	132.70	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr11	85723527	rs17745153	C	T	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	85725937	rs592297	C	T	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	85966177	rs7950735	G	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	85967709	rs10792842	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	85968623	rs974144	C	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	85975481	rs35685239	A	ATATT	443.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	85977117	rs10898460	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	85979636	rs72285136	CGT	C	205.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr11	86017658	rs291247	A	T	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	86037696	rs12295985	T	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	86037733	rs11419370	G	GC	839.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	86111700	rs12272824	A	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.01;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	86119396	rs4412777	G	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	86123467	rs3741006	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	86133784	rs1056194	C	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	86153911	rs7548	G	A	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	86157998	rs4944580	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	86161147	rs4944581	A	C	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	86161388	rs1042780	C	G	7657.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr11	86175193	rs11234662	A	G	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	86175300	rs605251	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	86198596	rs2279048	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	86208897	rs609848	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	86267678	rs4943943	G	A	7905.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr11	86270684	rs34249558	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	86519925	.	CGT	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.277;QD=1.65;ReadPosRankSum=-0.983;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr11	86650282	rs4631906	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	86889351	rs11235005	G	A	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	86988314	rs10898654	C	T	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	86988571	rs71043606	G	GT	341.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.10;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	87006776	rs10792935	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	87013438	rs2276102	G	A	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	87032215	rs7112344	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	87847018	rs3740925	C	T	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	88033661	rs217116	A	G	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	88045583	rs217086	A	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	88045815	rs5793312	C	CT	442.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	88068256	.	G	GA	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=6.583;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.384;QD=1.45;ReadPosRankSum=1.580;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:45,14:0.24:59
chr11	88070563	rs580808	C	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	88070858	rs11019400	A	G	3465.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	88070914	rs11600158	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	88242024	rs2941563	T	G	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	88338165	rs3816649	G	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	88645129	rs626218	T	A	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	88925242	rs10765196	G	C	1469.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	88925328	rs10765197	A	C	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	89017961	rs1126809	G	A	3651.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	89133449	rs317139	C	T	11196.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr11	89221958	rs597046	G	C	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	89223616	rs490934	C	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	89223931	rs2304500	G	A	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	89224101	rs3816123	G	T	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	89224131	rs34495256	T	TCTC	8903.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	89224229	rs35177439	G	GT	5749.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	89224326	rs10830279	G	A	6348.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	89224453	rs2289125	A	C	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	89370552	rs72971036	G	C	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	89370598	rs12363392	T	C	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	89370719	rs12363079	A	G	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	89371726	rs10765221	G	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.57;QD=29.99;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	89372210	rs7924505	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	89372292	rs7942274	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	89372341	rs7942295	T	G	2512.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	89372524	rs7945304	T	C	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	89378138	rs2072623	C	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.94;QD=27.79;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	89378269	rs11018694	C	T	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.16;QD=26.18;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	89392653	rs10765230	A	G	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.44;QD=25.85;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	89392799	rs10830330	G	A	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	89402557	rs80292557	G	T	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr11	89402687	rs11018718	T	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	89402728	rs11018719	A	G	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	89403414	rs10734120	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	89404941	rs11325465	CT	C	537.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.520;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.380;QD=13.44;ReadPosRankSum=2.334;SOR=0.340;set=HC	GT:AD:AF:DP	1/1:3,37:0.93:40
chr11	89405190	rs10047486	A	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.36;QD=27.06;SOR=1.430;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	89407164	rs59743058	C	CT	854.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.726;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.777;MLEAC=2;MLEAF=1.000;MQ=58.37;MQRankSum=-2.420;QD=15.00;ReadPosRankSum=-1.345;SOR=0.362;set=HC	GT:AD:AF:DP	1/1:8,49:0.86:57
chr11	89407391	rs2075536	A	C	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	89409158	rs4753234	A	G	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.87;QD=42.33;SOR=3.797;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	89409166	rs4753235	G	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.00;QD=40.04;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	89413781	rs10830339	C	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	89413850	rs10830340	C	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.45;QD=44.44;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	89413867	rs7128813	G	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.88;QD=42.20;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	89413975	rs10830341	C	T	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	89424716	rs2035677	A	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.28;QD=40.32;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	89424736	rs200000727	GTGTGTATATATATATATATATATATA	G,GTA	1792.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=94;set=Intersection	GT:AF:DP	1/2:0.15,0.79:73
chr11	89443429	rs10830355	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	89443808	rs11018745	A	C	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	89443939	rs10830356	C	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	89444754	rs7111680	G	A	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	89447256	rs1967075	A	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	89447313	rs1967074	A	G	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	89451057	rs3881253	A	G	6251.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	89451071	rs3881254	C	A	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	89531540	rs12417980	C	T	11121.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:1,421:1.00:422
chr11	89531801	.	CA	C	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.799;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-5.405;QD=2.03;ReadPosRankSum=1.500;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:89,45:0.34:134
chr11	89774197	rs200350663	CT	C	1019.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=50.28;MQRankSum=-6.949;QD=9.90;ReadPosRankSum=-1.848;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:23,80:0.78:103
chr11	89907096	rs201823460	T	TA	3952.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	89909096	.	ATG	A	232.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=4.338;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.329;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr11	89916226	rs116948108	A	G	6979.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	89935586	rs1045861	G	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	89936093	rs3758757	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.40;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	89938615	rs36109540	AAG	A	560.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	89939448	rs1943381	G	A	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	89939569	rs723715	T	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	89943548	rs3832739	T	TCAGA	1406.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	89946502	.	CAA	C	784.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.853;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=3.299;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.514;QD=24.52;ReadPosRankSum=-0.466;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr11	89951367	rs34787918	GA	G	672.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=0.992;SOR=0.515;set=HC	GT:AD:AF:DP	1/1:6,43:0.88:49
chr11	89951510	rs10830446	G	A	210.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	89955872	rs3740821	A	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	91545212	rs4753345	C	G	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	92292618	rs508848	A	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	92497990	rs3847524	C	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	92498315	rs374591934	GA	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=-0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.54;ReadPosRankSum=0.867;SOR=0.301;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr11	92531356	rs7949157	A	G	8868.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr11	92532677	rs12362722	T	C	7681.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	92534442	rs3847531	A	G	9027.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	92539384	rs4753415	A	G	179.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	92564767	rs6483189	T	G	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	92573911	rs10765565	G	T	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	92590448	rs4753069	A	G	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	92592536	rs35216054	GT	G	1842.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr11	92599851	rs3847553	G	A	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr11	92615715	.	C	T	361	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=1;HapScore=2;MGOF=21;MMLQ=22;MQ=56.6;NF=15;NR=3;PP=361;QD=21.987289586;SC=ACTTGGGGACCACAGTGGCCA;SbPval=0.74;Source=Platypus;TC=19;TCF=15;TCR=4;TR=18;WE=92615723;WS=92615713;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr11	92623608	rs7118363	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	92718127	rs1447350	G	C	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr11	92718163	rs1447351	A	G	2125.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	92914765	rs61920515	T	C	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	93085537	rs10831029	T	G	6960.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	93103419	rs12282978	C	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	93118413	rs140986877	AG	A	760.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	93118415	rs61919179	G	C	769.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	93118515	rs3020057	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	93122326	rs12283758	G	A	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	93122355	rs75547341	TA	T	402.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	93129483	rs12288277	GA	CG	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	93141580	rs2259633	C	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	93148371	rs12290433	C	T	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	93170909	rs375443728	T	TCC	254.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-0.000;QD=25.43;ReadPosRankSum=0.126;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:1,9:0.90:10
chr11	93212161	rs2605594	A	G	12123.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr11	93212254	rs2658797	C	T	14705.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr11	93400052	rs7123801	G	A	46.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	93402096	rs1944101	C	A	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	93403067	rs1954994	G	A	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	93408831	rs10831088	G	A	2877.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.69;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	93408958	rs35646565	C	CA	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	93412774	rs1944100	A	G	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	93425159	rs4753495	C	A	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	93454831	.	G	GGTGT	571.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.73;ReadPosRankSum=-0.506;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr11	93462607	rs7131178	A	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	93463145	.	AT	A	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.972;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.668;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr11	93463332	rs7101779	A	G	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	93463666	rs7119918	C	A	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	93463726	rs34898352	T	TAG	1326.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	93466866	rs2155248	G	T	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	93474570	rs11280945	T	TGCGTGA	24521.73	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr11	93474678	rs630648	G	C	10000.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr11	93474791	rs623510	G	T	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	93474827	rs631116	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	93480708	rs624856	T	C	306.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	93480717	rs5793654	A	ATATCTTACT	297.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	93487008	rs623993	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	93490682	rs604414	T	A	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr11	93490699	rs369459092	AT	A	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=0.598;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr11	93494878	rs72097212	AAG	A	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	93517874	rs7116967	C	G	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	93517886	rs2848477	G	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	93521405	rs676586	C	T	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	93527219	rs657177	T	C	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	93527282	rs5793656	GA	G	1805.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	93534929	.	T	TGA	997.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	93534930	.	TTC	GAT	513	.	AC=2;AF=1.00;AN=2;BRF=0.04;FR=1.0000;HP=3;HapScore=1;MGOF=19;MMLQ=28;MQ=60.0;NF=15;NR=7;PP=513;QD=26.203085221;SC=TCATAAAATTTTCGAATCATT;SbPval=0.58;Source=Platypus;TC=22;TCF=15;TCR=7;TR=22;WE=93534940;WS=93534920;set=Platypus	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	93534930	.	TTC	T	997.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	93534990	rs655699	G	A	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	93754508	rs2511403	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	93797619	rs1945783	A	G	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	93801012	rs10765650	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	93801062	rs10765651	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	93803717	rs1878799	C	G	1731.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	93806416	rs1914725	T	C	4656.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	93806705	rs2949862	C	T	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	93913458	rs3020015	T	C	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	94113288	rs3740867	C	G	7921.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	94203868	rs610611	A	T	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	94209348	rs13447623	T	C	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	94212930	rs35062043	T	TA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.997;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:33,9:0.21:42
chr11	94223855	rs608452	A	G	170.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	94231257	rs2509943	C	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	94231847	rs1046654	G	A	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	94245740	rs2509324	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	94250684	rs582049	A	G	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	94250709	rs582077	T	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	94261255	rs647484	C	G	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	94261514	rs12282965	A	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	94264882	rs12294732	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	94265043	rs60740931	CT	C	1513.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:6,80:0.93:86
chr11	94320237	rs7110167	T	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	94322352	rs11020845	AG	TA	16201.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;JOINED;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr11	94326627	rs11020851	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	94326765	rs57607909	G	C	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr11	94337220	rs593690	C	T	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	94354019	rs504010	T	C	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	94474044	rs11300560	GT	G	3310.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	94474134	rs72971737	C	G	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=26.49;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr11	94501849	rs2915239	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	94533373	rs2303960	C	T	14042.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr11	94587076	rs72973827	T	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	94696474	rs58293261	G	GA	361.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.09;ReadPosRankSum=1.813;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr11	94699391	.	TACACACACACAC	T,TAC	1228.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=38;set=Intersection	GT:AF:DP	1/2:0.29,0.68:34
chr11	94699507	rs34805065	A	AT	1990.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	94704037	rs3737505	C	G	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	94704092	rs4753645	T	A	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.16;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	94704092	.	TAG	AAA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=3;HapScore=1;MGOF=7;MMLQ=24;MQ=60.0;NF=72;NR=36;PP=2947;QD=20;SC=TATTTTAGAATAGCATGGTAA;SbPval=0.57;Source=Platypus;TC=109;TCF=72;TCR=37;TR=108;WE=94704102;WS=94704082;set=Platypus	GT:AD:AF:DP	1/1:1,108:0.99:109
chr11	94704094	rs4753646	G	A	5723.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=1.102;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	94704689	rs3831469	A	AAC	2789.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:14,93:0.87:107
chr11	94759059	rs10752685	A	G	3908.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.55;QD=26.77;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	94782539	rs620838	G	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	94800902	rs5793709	G	GC	24854.73	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr11	94823448	rs3016947	A	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	94861491	rs599281	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	94908591	.	AT	A	1216.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	94908658	rs11021065	G	T	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	94915241	rs10831316	T	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	95528663	rs5793747	C	CT	842.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.05;ReadPosRankSum=1.419;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:7,49:0.88:56
chr11	95825356	.	TTGC	T	2986	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=27;MQ=61.27;NF=37;NR=118;PP=2986;QD=20;SC=GCTGTTGCTGTTGCTGCTGCT;SbPval=0.18;Source=Platypus;TC=201;TCF=38;TCR=163;TR=155;WE=95825366;WS=95825346;set=Platypus	GT:AD:AF:DP	0/1:46,155:0.77:201
chr11	95825374	rs10557243	TTGCTGCTGC	T	4971.73	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:21,214:0.91:235
chr11	95825797	rs7931870	A	G	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	96092376	rs10765801	C	T	581.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	96106661	rs11021560	C	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	96123734	rs3842515	T	TG	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	96125435	rs10545425	CTT	C	545.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	99427091	rs2047166	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	99428929	rs11375374	C	CT	1909.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.490;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=1.030;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:2,83:0.98:85
chr11	99690286	rs10790978	T	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:73,80:0.52:153
chr11	99690428	rs7125822	T	G	2780.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:204,147:0.42:351
chr11	99690461	rs10893933	A	G	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.679;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=2.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=-0.907;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:159,96:0.38:255
chr11	99941322	rs2059014	C	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	100061827	rs3031278	G	GA,GAA	1187.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=59;set=Intersection	GT:AF:DP	1/1:0.97:59
chr11	100126394	rs2298472	G	A	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	100168289	rs1944178	C	T	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	100168320	rs75986029	T	TC	5452.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:2,202:0.99:204
chr11	100169829	rs1944180	A	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	100179226	rs112177948	G	A	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	100226773	rs10894795	A	G	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	100730087	rs661237	G	A	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	100730213	rs646392	G	A	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	100804088	rs626529	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	100811574	rs35159175	CAT	C	2239.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	100811690	rs661973	G	T	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=63.02;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	100812338	rs151209547	A	AAC	233.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	100812340	.	GAC	CAG	179	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=3;HapScore=2;MGOF=19;MMLQ=28;MQ=60.0;NF=4;NR=0;PP=179;QD=58.1169687156;SC=CTGATTCTAAGACACTCTACC;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	100812342	rs370937549	CACTCTACCCTAT	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=36.82;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	100812344	.	CTCTACCCTAT	C	2136	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=1;HapScore=2;MGOF=19;MMLQ=23;MQ=61.53;NF=3;NR=1;PP=2136;QD=542.75;SC=TTCTAAGACACTCTACCCTAT;SbPval=0.68;Source=Platypus;TC=4;TCF=3;TCR=1;TR=4;WE=100812361;WS=100812330;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	100812446	rs143636655	A	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	100814409	rs619066	G	A	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	100814570	rs543146	A	G	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	100814609	rs618155	G	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	100819305	rs633967	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	100819392	rs504081	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	100819447	.	C	A	21	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=3;HapScore=2;MGOF=77;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=21;QD=27.8856062736;SC=ATAACTCTACCTTTCTGACTT;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=100819455;WS=100819437;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr11	100820725	rs694556	A	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	100827326	rs151243237	AAATAT	A	9777.73	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	100830693	rs563460	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	100833059	rs540866	A	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	100847050	rs569270	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	100847069	rs569336	G	A	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr11	100847749	rs575734	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	100847829	rs3216738	CA	C	1167.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	100849673	rs10791440	A	C	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	100856955	rs551632	C	T	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	100858098	rs145797581	G	C	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	100863096	rs515552	A	G	9195.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	100863354	rs471933	C	A	8275.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr11	100922404	rs578029	A	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	100933598	rs11571221	G	GAATGA	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;MQ=61.53;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	100998105	rs11571153	C	T	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	100998623	rs1379130	G	A	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	100999838	rs11437764	A	AG	1840.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	101374626	rs4542378	G	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	101375549	rs10501986	T	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	101771248	rs3858418	G	A	8704.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr11	101832478	rs7926728	G	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	101833644	rs7109233	C	T	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	101857758	rs6590942	G	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	101918327	rs12804542	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	101984718	rs2033082	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	102199589	rs35083591	TTA	T	583.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.62;ReadPosRankSum=0.955;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:2,25:0.93:27
chr11	102207024	rs7124969	C	T	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	102207851	rs1055088	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	102323160	rs2436036	C	T	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	102391425	rs14983	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	102398433	rs3216144	C	CT	14958.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	102398436	rs78978042	C	T	14925.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr11	102398593	rs10502001	C	T	8235.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	102449650	rs7934921	T	A	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	102449951	rs1940054	A	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	102465281	rs7116339	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	102563888	rs34605175	GA	G	2850.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	102564576	rs17099394	G	T	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	102573396	rs2701994	C	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	102576358	rs2846707	T	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	102576375	rs1939015	G	A	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	102576585	.	CT	C	130.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.365;ClippingRankSum=-0.000;DP=33;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.349;QD=8.17;ReadPosRankSum=1.413;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr11	102584023	rs1939018	T	A	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	102584104	rs35866072	T	G	11067.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr11	102584207	rs33927742	A	G	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	102584466	rs3832755	G	GT	3421.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,156:0.99:158
chr11	102584607	rs2509013	T	C	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	102585493	.	TTATATATATATATA	T	614.73	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=40.98;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	102592049	rs113713628	T	TTG,TTGTG	2117.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;set=Intersection	GT:AF:DP	1/2:0.20,0.79:56
chr11	102593042	rs948218	T	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	102593273	rs12803000	T	G	10358.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr11	102594376	rs6590983	A	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	102594427	rs6590984	T	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	102594444	rs12802760	G	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	102595492	rs3765620	G	A	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	102595579	rs17099450	G	C	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	102595666	rs2155052	C	G	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	102623115	rs531335	A	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	102641419	rs17293348	T	C	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr11	102642716	rs17860997	A	AT	3782.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	102643505	rs17860992	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	102646913	rs17860975	C	G	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	102647310	rs470154	T	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	102647536	rs2276108	T	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	102647552	rs3819099	C	T	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	102649543	rs470277	T	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	102650389	rs17293607	C	T	8495.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr11	102666043	rs491152	A	G	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	102666316	rs470558	T	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	102668603	.	CAA	C	913.73	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:1,35:0.97:36
chr11	102668702	rs470358	T	C	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=26.06;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	102668882	rs3213460	G	A	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	102735103	rs476185	A	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	102737944	rs28381681	CA	C	1152.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	102738793	rs5794199	G	GT	6581.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	102738795	rs5003690	G	T	6590.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	102815970	rs61571704	CA	C	82.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.29;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	102824826	rs478927	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	102825091	rs640198	T	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr11	103004929	rs2450918	C	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	103013954	rs2514006	G	T	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	103019443	rs2514000	C	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	103022842	rs10664799	G	GTT	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.67;ReadPosRankSum=-0.319;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	103025071	rs72175476	AGT	A	265.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	103026040	rs5794210	CT	C	443.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr11	103029373	rs688094	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	103029516	rs688906	A	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	103033914	rs657936	A	T	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	103047007	rs585692	C	A	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	103050028	rs632672	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	103057048	rs658804	A	G	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	103058126	rs586592	C	T	8598.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr11	103060309	rs617059	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	103074349	rs631712	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	103074639	rs613978	C	A	220.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	103082590	rs589623	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	103086381	rs679691	G	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	103086399	rs78873690	G	GTA	1389.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	103086725	rs635193	C	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	103091237	rs636510	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	103091546	rs670464	G	A	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	103092945	rs654061	A	G	247.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	103092968	rs669940	C	T	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	103101868	rs667819	G	C	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	103104930	rs1784259	C	A	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	103192039	rs313407	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	103229027	rs2566913	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr11	103229110	rs2671333	G	A	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr11	103229173	rs2514408	A	C	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	103229188	rs2512128	G	C	4476.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	103229238	rs2512129	G	A	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	103870755	rs11226108	G	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	103870761	rs3839944	AT	A	1125.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	103871039	rs10791660	C	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	104757836	rs5794352	T	TA	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	104758035	rs484438	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	104761013	rs635846	T	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	104761100	rs513131	T	C	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	104761206	rs647039	C	T	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	104761271	rs693506	A	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	104762228	rs544216	G	A	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	104763117	rs497116	G	A	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	104763716	rs617983	A	G	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	104768000	rs693001	G	A	9453.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	104768098	rs555367	T	C	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	104819327	rs9507	T	C	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	104819542	rs5794358	G	GAAAC,GAAACAGAC	2166.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:49
chr11	104819544	.	GAG	CAC	1402	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=25;MQ=62.51;NF=9;NR=22;PP=1402;QD=46.9505766085;SC=CACACAGAGAGAGACACACAC;SbPval=0.62;Source=Platypus;TC=36;TCF=11;TCR=25;TR=31;WE=104819554;WS=104819532;set=Platypus	GT:AD:AF:DP	1/1:5,31:0.86:36
chr11	104819544	rs33955446	G	GACAC	2166.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.04;QD=45.14;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	104819546	rs5004914	G	C	2131.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.12;QD=46.34;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	104820163	rs649739	A	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	104872981	rs544211	C	T	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	104874179	rs3831481	T	TGA	521.52	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:2,19:0.90:21
chr11	104877717	rs2282658	C	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	104877803	rs2282657	A	G	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr11	104877927	rs507879	T	C	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr11	104893693	rs5794371	C	CAG	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	104893999	rs1699090	A	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	104896047	rs504054	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	104896226	rs483345	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	104896375	rs2509648	G	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	104896880	rs534811	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	104896893	rs476889	C	A	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	104899817	rs505901	C	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	104900115	rs503153	G	C	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	104900385	rs501192	C	T	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	104900488	rs580253	G	A	5865.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	104900948	rs45483194	T	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	104901007	rs473549	C	T	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	104903719	rs572687	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	104904570	rs568910	A	C	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	104905047	rs539595	G	A	16491.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr11	104912012	rs17103597	G	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	104912221	rs542571	T	A	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	104912458	rs1503391	A	C	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr11	104914087	rs71037294	AG	A	154.92	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr11	104971210	rs1792771	C	T	5944.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	104972190	rs1792773	C	T	10156.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr11	105782501	.	AAT	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.705;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.77;ReadPosRankSum=0.360;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr11	105836923	rs632549	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	105842916	rs559190	C	T	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	105844923	rs509512	C	A	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	105948563	rs11553947	C	T	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	105965216	rs1893175	G	T	171.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr11	106407855	rs10599029	AAT	A	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.769;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.83;ReadPosRankSum=-0.743;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr11	106408031	rs11279851	TCAAATG	T	11694.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	106408071	rs1791468	C	T	5754.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr11	106408212	rs2852371	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	106579204	rs12420232	C	A	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	106647222	rs34690080	G	A	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	106695514	.	AT	A	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=55.07;MQRankSum=-7.533;QD=2.44;ReadPosRankSum=0.591;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:67,30:0.31:97
chr11	106697172	rs61678754	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.33;QD=24.28;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	106807443	rs11331245	AT	A	1770.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:11,108:0.91:119
chr11	106849400	rs35760785	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	106888608	rs3107973	G	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	107197640	rs3758911	T	C	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr11	107205426	rs10789620	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	107207441	.	TA	T	45	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9999;HP=12;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=45;QD=12.75;SC=TCTGAACATCTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=4;WE=107207449;WS=107207431;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	107216388	rs474364	C	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr11	107263490	rs78566481	A	C	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr11	107286893	rs11439588	T	TG	1225.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	107287139	rs520729	T	A	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	107313608	rs144259680	G	GAAGA	2398.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.178;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.57;MQRankSum=0.659;QD=42.83;ReadPosRankSum=0.640;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,54:0.96:56
chr11	107326340	rs618078	C	A	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	107375422	rs117249984	C	A	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	107396355	rs76439306	T	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	107431637	rs662349	C	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	107462878	rs542650	A	C	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	107462895	rs4085361	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	107462977	rs5794560	G	GT	398.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	107686441	rs78196341	T	C	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	107904646	rs10890800	C	T	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr11	107917087	rs7117111	A	G	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	107948858	rs10890807	T	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	107992325	rs3741055	T	A	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	107992346	rs3741056	G	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	108006047	rs10890817	A	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:1,150:0.99:151
chr11	108012510	rs34420529	A	AAAGT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	108013093	rs10890818	A	G	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	108014662	rs5794587	T	TA	141.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.85;ReadPosRankSum=-0.207;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr11	108014684	rs374107553	AC	A	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,16:0.89:18
chr11	108014799	rs10890819	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.11;QD=25.52;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	108018284	rs201268334	TTAAAAA	T	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	108043988	rs2070661	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	108057430	rs4753833	G	A	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	108059000	rs3781869	T	C	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.53;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	108061039	.	CAAA	C	52	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=20;HapScore=2;MGOF=20;MMLQ=16;MQ=57.85;NF=4;NR=0;PP=52;QD=13.75;SC=GACACTGTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=10;TCF=10;TCR=0;TR=4;WE=108061049;WS=108061029;set=Platypus	GT:AD:AF:DP	1/1:6,4:0.40:10
chr11	108061379	rs659584	C	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	108064935	rs11212546	A	G	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	108068954	rs683312	T	C	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	108079315	rs34033921	T	TA	144.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.464;QD=8.03;ReadPosRankSum=1.731;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr11	108093208	rs228589	A	T	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	108098459	rs2066734	TAA	T	2781.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	108100105	rs11390378	G	GT	187.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=17.07;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	108114661	.	A	ATT	54	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=15;HapScore=3;MGOF=8;MMLQ=21;MQ=60.0;NF=2;NR=3;PP=54;QD=11.4;SC=ATGACTAATAATTTTTTTTTT;SbPval=0.5;Source=Platypus;TC=18;TCF=9;TCR=9;TR=5;WE=108114669;WS=108114651;set=Platypus	GT:AD:AF:DP	0/1:13,5:0.28:18
chr11	108121410	rs34325032	C	CT	373.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.419;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr11	108129657	rs672655	A	G	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	108137775	rs642496	T	A	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	108141701	rs651030	G	T	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	108141955	rs373881770	CT	C	320.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.339;QD=3.18;ReadPosRankSum=-0.061;SOR=0.492;set=HC	GT:AD:AF:DP	0/1:62,39:0.39:101
chr11	108143182	rs664677	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	108151707	rs3218681	T	TA	1476.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.06;QD=26.37;SOR=1.954;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	108183167	rs659243	A	G	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.61;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	108188266	rs58978479	AT	A	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.005;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=2.373;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr11	108195976	rs11366542	GT	G	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=10.891;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.850;QD=5.22;ReadPosRankSum=2.054;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr11	108196712	rs3212322	CATT	C	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=41.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	108218196	rs227075	T	C	142.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	108224697	rs179108	G	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	108225483	rs664982	C	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	108225661	rs664143	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	108256837	rs113995	A	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	108345515	rs11374964	G	GA	2823.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	108352160	rs3901850	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	108361578	rs11212676	G	A	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	108380335	rs1943382	T	C	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	108381247	rs2640779	C	T	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	108384207	rs2846412	C	T	5268.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	108399005	.	C	A	1831.77	.	AC=2;AF=1.00;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	108409784	rs2640785	T	A	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr11	109964079	rs7116552	C	A	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	109964089	rs11395531	T	TG	1896.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	110023628	rs665013	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	110134593	rs36094903	C	CA	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.809;QD=11.23;ReadPosRankSum=0.057;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr11	110143054	rs1676530	A	G	85.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	110452999	rs2008772	C	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	110453009	rs4079590	G	A	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.52;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	110453250	rs4142632	C	G	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	111152263	rs5794734	ACT	A	2270.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	111156836	rs3087967	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	111179054	rs3087587	A	G	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	111229470	rs12282082	T	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	111249785	rs11213863	C	G	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	111249819	rs10789825	A	G	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	111275250	rs4938535	T	C	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.204;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	111325007	rs61896868	C	T	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	111326284	rs7925584	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	111327213	rs11213913	G	A	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	111338478	rs651882	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	111368047	rs489078	G	T	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr11	111383789	rs11606481	C	T	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	111404569	rs117655744	G	A	3702.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	111420364	rs634679	A	G	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	111421906	rs117847213	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	111422217	rs663763	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	111487106	rs571462	C	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	111608258	rs45568137	C	G	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr11	111623088	rs4936675	T	A	9305.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	111636627	rs643506	T	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	111637117	rs139691367	T	TCCCGCCCCGCGCCCAGGC	2316.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,81:0.98:83
chr11	111659476	rs2554996	C	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	111728552	rs1991303	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	111741106	rs72994380	A	C	516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.339;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.53;ReadPosRankSum=0.145;SOR=0.353;set=HC	GT:AD:AF:DP	1/1:1,23:0.96:24
chr11	111742145	rs10708475	CG	C	6021.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	111747297	rs7124696	A	G	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr11	111747427	rs634983	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	111749349	rs611010	A	T	5385.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	111750430	rs7107213	A	G	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	111754368	rs11600652	A	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	111754574	rs1045282	A	C	8641.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.306;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=6.718;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=2.762;SOR=0.404;set=HC	GT:AD:AF:DP	1/1:2,329:0.99:331
chr11	111780837	rs2070894	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	111781047	rs11603779	A	C	7353.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr11	111848361	rs11364849	AG	A	1797.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	111848531	rs10891303	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	111853106	rs11455434	G	GC	4943.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	111866442	rs3839945	GAC	G	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	111889635	rs650461	C	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	111889654	rs476581	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	111896324	rs2303436	C	T	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr11	111897050	rs1974426	A	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;QD=30.42;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	111899144	.	CAAA	C	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=1.142;QD=14.12;ReadPosRankSum=-1.358;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr11	111903995	rs478941	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	111908162	rs627441	T	C	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr11	111909819	rs6589260	C	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	111915765	rs11455845	C	CA	1386.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.503;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.309;QD=16.91;ReadPosRankSum=-2.037;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:7,75:0.91:82
chr11	111916001	rs11335731	AG	A	2730.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	111916647	rs10891314	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	111930576	rs3882890	C	T	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	111933088	rs10891315	A	G	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	111956989	rs14396	C	A	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	111957143	rs487201	T	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr11	111957819	rs7121782	G	T	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	111963860	rs592626	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	112041128	rs149903853	TTTTGTCCTG	T	2033.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	112064431	rs7105056	T	C	4194.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr11	112065434	rs10891338	T	C	6712.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr11	112065483	rs7123686	A	C	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	112071570	rs7948124	AA	TT	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	112072930	rs4935984	G	A	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	112072992	rs376091859	TTC	T	78.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,6:0.23:26
chr11	112087101	rs2676377	T	A	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	112088499	rs2217401	A	C	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr11	112099410	rs3819331	T	C	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	112123095	rs2564872	A	G	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	112130987	rs2518361	G	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	112832276	rs145493999	A	AG	2274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.067;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=-0.179;SOR=1.011;set=HC	GT:AD:AF:DP	0/1:35,101:0.74:136
chr11	112832307	rs11381910	G	GA	5588.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	112832339	rs11284059	GC	G	5623.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	112832353	rs7105734	T	C	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	112832358	rs6589347	T	C	5218.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	113067854	rs973461	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	113073066	.	T	TTTTTGTTTTG	3258.73	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.04;QD=48.64;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr11	113076461	rs142086348	A	T	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	113076982	rs1975259	G	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	113085244	rs686050	C	G	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	113111665	rs2303378	G	A	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	113113515	rs635596	G	A	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	113143557	rs2156485	C	T	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	113186776	rs2236709	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr11	113186879	rs7130072	C	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	113194168	rs723077	A	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	113195595	rs948178	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	113229917	rs138502406	C	T	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	113234679	rs719802	T	C	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr11	113234775	rs719804	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	113561054	rs7110736	A	G	9867.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr11	113561057	rs7110738	A	G	9849.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr11	113561481	rs45570834	AG	A	934.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	113561609	rs186244114	G	A	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr11	113565322	rs17115841	C	A	7383.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:1,282:1.00:283
chr11	113566205	rs45515199	C	T	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.43;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	113566205	.	CGC	TGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=93;NR=76;PP=2947;QD=20;SC=GGGCAGGGGCCGCCCTGCAGC;SbPval=0.48;Source=Platypus;TC=174;TCF=97;TCR=77;TR=169;WE=113566215;WS=113566195;set=Platypus	GT:AD:AF:DP	1/1:5,169:0.97:174
chr11	113566207	rs4936279	C	A	8930.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr11	113570405	rs4936280	T	C	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr11	113570490	rs3802856	T	C	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	113576932	rs7926267	A	G	3834.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	113609854	rs4351850	T	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	113618470	rs2459977	T	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	113618968	rs2513584	G	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr11	113644261	rs2136445	G	A	15650.77	.	AC=2;AF=1.00;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr11	113670052	rs2459971	T	A	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	113678924	rs2513582	G	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	113679119	rs2465647	C	T	3994.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	113680018	rs2513581	G	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	113706122	rs10789965	G	A	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr11	113802600	rs45597437	CA	TG	12869.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr11	113803028	rs1176744	A	C	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr11	113846006	rs1062613	T	C	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	113848184	rs4020460	G	GCT	2513.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	113848273	rs1985242	A	T	5257.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.16;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr11	113856681	rs10160548	G	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr11	114027277	rs17116545	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	114057944	rs682155	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	114270604	rs3741302	C	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.72;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	114273673	rs17547494	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	114284645	rs3897612	CA	AG	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	114284744	rs11214983	C	T	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	114310469	rs476200	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	114315188	rs540712	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	114316634	rs74658740	T	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	114316989	rs654531	C	A	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	114318464	rs11214994	A	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	114398627	rs35058533	CA	C	3528.73	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:10,181:0.95:191
chr11	114401247	rs7941796	A	G	7054.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	114401283	rs7941923	C	T	8219.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr11	114401611	rs7944960	A	G	11271.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr11	114421646	rs79339030	A	G	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr11	114421674	rs75026329	G	A	609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=1.154;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chr11	114421683	rs79413019	G	A	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=1.023;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr11	114421698	rs75909356	A	G	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=-0.744;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr11	114421705	rs78231204	A	G	1314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.29;ReadPosRankSum=-0.852;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:56,36:0.39:92
chr11	114421711	rs77069178	C	T	1428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.788;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.58;ReadPosRankSum=-0.934;SOR=1.249;set=HC	GT:AD:AF:DP	0/1:60,38:0.39:98
chr11	114421713	rs112529011	GT	G	1506.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:59,38:0.39:97
chr11	114421721	rs78612878	G	A	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,47:0.43:110
chr11	114421747	rs78105386	G	A	2714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.698;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.45;ReadPosRankSum=-0.886;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:93,72:0.44:165
chr11	114421754	rs73016111	G	A	2804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.811;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=0.274;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:103,75:0.42:178
chr11	114421768	rs75860289	A	T	3380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=8.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.41;ReadPosRankSum=1.092;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:118,88:0.43:206
chr11	114421769	rs76481835	C	G	3416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.918;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=6.954;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.51;ReadPosRankSum=1.262;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:119,88:0.43:207
chr11	114421773	rs74572030	A	G	3398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=7.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.38;ReadPosRankSum=2.112;SOR=1.149;set=HC	GT:AD:AF:DP	0/1:130,91:0.41:221
chr11	114421789	rs113431368	A	AC	4369.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:149,111:0.43:260
chr11	114421799	rs79701489	C	T	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:146,118:0.45:264
chr11	114421817	rs73568242	G	T	4808.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:155,137:0.47:292
chr11	114421857	rs78453693	T	C	7060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.395;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.910;QD=21.46;ReadPosRankSum=-1.122;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:148,181:0.55:329
chr11	114421861	rs76118887	G	A	7099.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.537;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.924;QD=20.94;ReadPosRankSum=-0.058;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:155,184:0.54:339
chr11	114421895	rs78257939	G	A	4138.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:147,200:0.58:347
chr11	114421909	rs79082937	T	C	7632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.401;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.856;QD=22.85;ReadPosRankSum=2.795;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:140,194:0.58:334
chr11	114421912	rs78658939	A	G	7656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.836;QD=23.49;ReadPosRankSum=2.333;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:133,193:0.59:326
chr11	114421927	rs78842965	G	A	3880.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:119,180:0.60:299
chr11	114421962	rs75409523	G	A	5368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.97;ReadPosRankSum=-0.655;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:86,138:0.62:224
chr11	114421967	rs79109814	A	G	5130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.09;ReadPosRankSum=-0.571;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:83,130:0.61:213
chr11	114422003	rs73568250	A	C	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chr11	114422016	rs76270589	T	A	1980.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.976;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.21;ReadPosRankSum=-0.859;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:43,55:0.56:98
chr11	114422025	rs75158214	C	A	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.59;ReadPosRankSum=-0.146;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:38,45:0.54:83
chr11	114422029	rs78778953	T	G	1668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.96;ReadPosRankSum=0.031;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:35,41:0.54:76
chr11	114422036	rs77481744	C	T	1543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.04;ReadPosRankSum=-0.816;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:29,38:0.57:67
chr11	114422052	rs10790022	G	C	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	114422068	rs76698432	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.97;ReadPosRankSum=2.001;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:18,19:0.51:37
chr11	114422068	.	CTA	TTC	842	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=2;MGOF=122;MMLQ=28;MQ=60.0;NF=2;NR=16;PP=842;QD=49.7482152701;SC=TTTCCCTCTGCTAACTAACAA;SbPval=0.72;Source=Platypus;TC=36;TCF=5;TCR=31;TR=18;WE=114422078;WS=114422058;set=Platypus	GT:AD:AF:DP	0/1:18,18:0.50:36
chr11	114422070	rs75429280	A	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.232;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.49;ReadPosRankSum=2.391;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,18:0.50:36
chr11	114441595	rs1850521	G	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	114441936	rs12421748	A	G	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	114442103	rs550897	A	G	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	114442265	rs481080	G	A	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	114465526	rs78608548	A	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	114550334	rs1612325	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	114569054	rs1712838	A	G	8937.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr11	114576626	rs1356428	A	T	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	115049180	rs17304149	C	T	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	115061533	rs4936322	T	C	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	115102224	rs11607928	A	G	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	115316480	rs190256841	C	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	116640772	.	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=1.314;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:50,23:0.32:73
chr11	116652728	.	C	CA	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.068;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.04;MQRankSum=2.639;QD=2.60;ReadPosRankSum=-0.614;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr11	116654375	rs185082164	G	A	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	116968798	rs7128071	G	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	117015189	rs113560866	G	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	117030581	rs1871757	T	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	117030624	rs35139041	AT	A	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,51:0.93:55
chr11	117032125	rs3736120	G	T	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	117034388	rs3057863	CAAAAAA	C	1815.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=38.63;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	117034619	rs7122944	G	T	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	117034729	rs10790175	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	117042377	rs4936367	G	A	2761.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	117052069	rs35248926	GTCTCT	G	4290.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	117053165	rs7946257	A	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	117057926	rs147230843	C	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr11	117059347	rs90192	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	117059552	rs474339	G	A	10166.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr11	117064506	rs115787357	T	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.11;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	117064693	rs521171	C	G	4829.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr11	117090545	rs3882895	T	C	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	117090558	rs74830	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	117095361	rs236919	C	T	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr11	117096652	rs2277287	G	A	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	117096857	rs11419279	C	CT	354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=10.75;ReadPosRankSum=1.465;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:7,26:0.79:33
chr11	117097952	rs2306473	C	T	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr11	117100029	rs4938362	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	117100594	rs500389	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	117109270	rs678837	G	T	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	117110417	rs73010409	T	C	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	117110764	rs139284124	TA	T	139.74	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	117151014	rs3832781	A	AGTTT	3466.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr11	117152540	rs505045	G	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	117160347	rs539765	A	G	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	117163765	rs490460	C	A	6457.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr11	117251521	rs2061293	G	C	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	117252489	rs897836	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	117257876	rs2305829	G	T	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	117280724	rs5795079	TC	T	14252.73	.	AC=2;AF=1.00;AN=2;DB;DP=400;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=36.83;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr11	117282800	rs522885	G	T	16662.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:1,625:1.00:626
chr11	117299015	rs2925768	T	C	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr11	117306291	rs661789	G	T	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	117308183	rs73592180	A	G	788.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	117308795	rs2253440	G	A	5933.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	117332352	rs588048	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	117342672	rs34573317	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	117376413	rs34138305	G	A	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	117403235	rs3741280	G	T	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	117580254	rs2508559	T	C	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.06;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	117580356	rs605500	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	117580509	rs655086	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	117580585	rs604245	A	G	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	117651600	rs75693006	G	A	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	117695340	rs3824943	C	T	18472.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr11	117698483	rs11216567	A	G	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	117713653	rs149530999	C	CT,CTT	1728.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.46;ReadPosRankSum=-0.229;SOR=0.779;set=HC	GT:AD:AF:DP	1/2:13,59,33:0.56,0.31:105
chr11	117772787	.	GCA	G	60	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=1;HapScore=2;MGOF=11;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=60;QD=31.5;SC=GCACACATATGCACACACACA;SbPval=1.0;Source=Platypus;TC=14;TCF=12;TCR=2;TR=2;WE=117772796;WS=117772784;set=Platypus	GT:AD:AF:DP	0/1:12,2:0.14:14
chr11	117772848	rs491822	C	T	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	117773110	rs494457	G	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	117774291	rs2845712	A	C	8190.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr11	117776526	rs3802872	A	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	117781435	rs2155194	A	G	2880.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	117782638	rs2277288	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	117790658	rs10790220	C	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr11	117790674	rs12418028	A	G	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	117799923	rs7928668	T	C	9468.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	117800083	rs10892196	T	C	3533.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	117800169	rs11600129	C	T	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	117899803	rs617357	G	A	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	117899816	rs617345	T	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	117965530	rs2276122	A	G	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	117982495	rs1941635	T	G	9465.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr11	117986152	rs7925897	A	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	117988082	rs642215	T	C	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	117988223	rs643014	G	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	117996119	rs7944738	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	118067426	rs648947	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr11	118067621	rs951657	A	G	5556.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	118068949	rs1617182	C	T	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	118071097	rs1626649	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	118074117	rs1793173	A	G	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	118074337	rs1793174	A	G	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	118081345	rs17121881	A	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr11	118081468	rs17121882	C	T	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	118083664	rs1715429	A	G	6444.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	118186305	rs2231449	C	A	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr11	118209960	rs2276424	A	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	118210106	rs2276423	G	C	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	118210424	.	T	TAC,TACAC	6613.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=262;set=Intersection	GT:AF:DP	1/2:0.27,0.68:198
chr11	118215075	rs150376137	AGGCT	A	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	118221474	rs1561966	G	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	118240332	rs11216860	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	118247264	rs11394107	C	CT	717	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:8,43:0.84:51
chr11	118255278	rs6589663	G	A	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chr11	118255662	.	TAAA	T	567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.594;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=3.017;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.16;ReadPosRankSum=-0.865;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr11	118257081	rs11216863	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	118263388	rs2276422	C	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	118279645	.	A	AAT	47	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=21;MQ=60.0;NF=2;NR=1;PP=47;QD=18.0;SC=AATAGTTTCAAATATATATAT;SbPval=0.48;Source=Platypus;TC=15;TCF=12;TCR=3;TR=3;WE=118279653;WS=118279635;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr11	118309873	rs34166714	CA	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-0.503;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:54,29:0.35:83
chr11	118353037	.	G	GTT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.226;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.437;QD=0.72;ReadPosRankSum=1.292;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr11	118369265	.	TA	T	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.355;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=6.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=-0.498;SOR=1.539;set=HC	GT:AD:AF:DP	0/1:65,21:0.24:86
chr11	118401968	.	G	GGGGGGC	2435.73	.	AC=2;AF=1.00;AN=2;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	118405068	rs12289253	A	G	4161.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr11	118405305	rs45505501	G	A	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr11	118405343	rs512849	G	A	6511.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr11	118405377	rs45485302	C	A	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	118405437	rs45548238	CA	TG	4552.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	118405453	rs45474901	T	C	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr11	118406328	rs141837942	CAGTGTGGA	C	8865.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	118415847	rs3741320	GA	CC	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	118415931	rs368284513	CT	C	394.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	118416073	rs3825055	A	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	118416253	rs2277295	C	T	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	118422385	.	C	CAA	264.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.875;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.230;QD=17.65;ReadPosRankSum=-0.349;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr11	118422868	rs2277293	C	T	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	118425051	rs56403966	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr11	118425063	rs55857590	A	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	118425419	rs2277292	G	T	238.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	118430519	rs11552421	C	T	4907.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	118444525	rs11216907	G	A	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr11	118451901	rs11216911	T	C	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	118454177	rs17842763	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	118471423	rs11216925	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	118471996	rs11216926	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	118472354	rs10892245	C	A	5162.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr11	118500744	rs141647594	GTT	G	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.072;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=8.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-0.874;SOR=1.851;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr11	118505676	rs58507527	GT	G	2439.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	118518964	rs11314049	GC	G	477.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	118529017	rs6589669	T	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	118529044	rs11448549	C	CG	1213.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	118529069	rs6589670	G	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.65;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	118529078	rs6589671	G	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.51;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	118622744	rs6589689	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=26.95;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	118625605	rs150977909	CAT	C	1390.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	118625609	rs580079	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	118626286	rs11217014	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	118627149	rs11217016	A	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	118629364	rs73001486	G	A	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	118754649	rs10892307	C	G	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr11	118757191	rs1790192	G	A	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.92;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	118757201	rs3176908	C	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr11	118769442	rs7104819	A	G	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr11	118770321	rs11217083	A	G	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr11	118781601	rs11376918	C	CA	10958.73	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr11	118781638	rs11376919	C	CG	9134.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr11	118781655	rs11376920	C	CG	8075.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	118842745	rs36158515	A	AG	4605.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	118842780	.	A	AG	2210.73	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr11	118868842	rs58467585	A	AG	497.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	118889114	rs10892321	A	G	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	118898435	rs56966114	AC	A	9170.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr11	118915757	rs11363127	TG	T	2065.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr11	118915944	rs1043314	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	118917587	rs45510602	C	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	118919132	rs2276060	G	A	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr11	118919206	rs568922	T	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr11	118920112	rs670192	A	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	118920453	rs673768	T	C	7248.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr11	118922200	rs1804690	G	A	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	118925341	rs538478	G	A	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr11	118926720	rs470679	A	C	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	118927013	rs57740718	T	TC	5017.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	118938880	rs584115	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	118938880	.	ATC	GTT	1692	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=3;NR=30;PP=1692;QD=52.8929659049;SC=AAGGAAGTCCATCTCCTAACT;SbPval=0.71;Source=Platypus;TC=36;TCF=4;TCR=32;TR=33;WE=118938890;WS=118938870;set=Platypus	GT:AD:AF:DP	1/1:3,33:0.92:36
chr11	118938882	rs670526	C	T	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.02;SOR=3.967;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	118939939	rs5795166	T	TC	2902.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	118942169	.	G	C	220.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr11	118947634	rs540261	C	T	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	118955679	rs589925	C	T	13739.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr11	119003322	rs662069	C	A	13665.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:1,521:1.00:522
chr11	119004009	rs672189	G	T	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	119004026	rs537153	C	T	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr11	119004686	rs658922	T	A	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr11	119005088	rs512703	C	T	11369.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr11	119005132	rs100803	C	T	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr11	119028813	rs626776	C	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	119031841	rs11383101	G	GC	3185.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	119043500	rs644252	T	G	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	119043656	rs643423	C	T	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	119052826	rs4245191	C	A	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr11	119054488	rs10790286	C	T	8782.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr11	119059404	rs1815811	G	A	6505.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr11	119060963	rs45535039	T	C	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	119065484	rs60630529	A	AC	10508.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr11	119065709	rs10750139	G	C	9692.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr11	119145705	rs3842642	G	GT	4275.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr11	119146659	rs2511854	G	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	119148573	rs2510152	G	T	8346.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	119155618	rs2298650	G	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr11	119181170	rs2249466	T	C	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	119181674	rs2510146	G	C	18132.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr11	119185133	rs6589731	C	T	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr11	119206375	rs2511841	G	A	7941.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr11	119213303	rs11217241	C	T	7058.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr11	119214771	rs948413	A	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr11	119215165	rs10790289	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr11	119215253	rs2509388	G	C	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr11	119215256	rs10892350	C	T	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	119216231	rs2510143	A	G	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr11	119216504	rs3814762	C	T	9559.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr11	119217254	rs883247	C	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	119217311	rs883245	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	119227844	rs11217253	G	C	2593.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	119229374	rs7937208	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	119229964	rs2241646	G	A	3020.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr11	119244095	rs587985	C	T	3938.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr11	119252151	rs565296	C	T	13359.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr11	119252199	rs670906	T	G	11938.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr11	119290034	rs1054735	G	C	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr11	119291480	rs3138091	G	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr11	119291688	rs3751026	A	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	119509625	rs1022080	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	119510644	rs7940667	A	C	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr11	119545224	rs113705862	T	TG	2517.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	119548698	rs2292293	T	G	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	119584506	rs4245205	T	C	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	119879255	rs609066	A	G	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	119879425	rs648374	T	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	119879488	rs1944496	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr11	119984202	rs506127	A	G	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	119986182	rs3216120	C	A	6416.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr11	119987576	rs488222	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	119992839	rs72245071	AGT	A	2442.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=42.12;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	119992871	rs2508493	T	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	119993897	rs66674912	CCT	C	22336.73	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr11	119999191	rs569044	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	120117335	rs73576276	C	T	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	120175749	rs7110845	A	G	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr11	120176310	rs12790634	G	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	120180298	rs185925330	GA	AG	7085.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	120292570	rs532006	T	A	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	120302456	rs117092333	G	A	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	120302729	rs55869319	C	T	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr11	120338040	rs2305011	A	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr11	120338142	.	CTT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.755;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=-0.142;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr11	120382409	rs7952113	T	C	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.55;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr11	120530973	rs6589829	C	T	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	120690372	rs56326825	T	C	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	120707644	rs3934628	C	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	120776001	rs2156634	G	A	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	120823528	rs10750178	A	G	5239.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	120827609	rs644057	A	G	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr11	120984087	rs2298478	C	G	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	120989335	rs612969	A	G	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr11	120996292	rs536069	A	G	9218.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr11	121000212	rs643744	T	G	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	121000784	rs586473	T	C	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr11	121016145	rs4936584	G	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	121016765	rs141024429	G	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:80,66:0.45:146
chr11	121016818	rs12275038	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	121016838	rs7130952	C	T	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr11	121032978	rs526433	G	A	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr11	121033105	rs662496	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	121035860	rs546916	G	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	121037530	rs489985	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	121037554	rs615697	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	121178302	rs1061332	A	C	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	121348741	rs138337334	CAAAAA	C	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.86;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	121367626	rs12364988	T	C	3264.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	121393212	rs630813	C	G	1631.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	121403229	rs636588	T	C	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr11	121403345	rs631232	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr11	121414476	rs2276346	G	T	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	121416187	rs11218325	A	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr11	121437819	rs1699107	C	G	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	121445084	rs1792126	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr11	121447807	rs1790212	A	G	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	121456962	rs1699102	C	T	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr11	121460664	rs1625828	G	A	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr11	121475798	rs1784929	T	A	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	121483401	rs1010159	C	T	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr11	121483651	rs1010158	G	A	272.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	121489416	rs1784933	G	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	121491782	rs1792120	G	A	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr11	121493001	rs1614735	T	G	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr11	121493072	rs11454566	T	TA	240.94	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,14:0.82:17
chr11	122022927	rs543412	C	T	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	122165766	rs532540	G	A	2016.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	122165826	rs189118393	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	122172113	rs558962	T	C	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	122172318	rs615683	C	T	2223.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.96;SOR=1.791;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr11	122172321	rs693194	T	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.78;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	122646967	rs12790613	G	A	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	122653950	rs2156802	C	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr11	122659918	rs955051	T	G	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	122665301	.	C	T	437.77	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	122665437	rs872414	A	G	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	122665549	rs11218816	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	122678728	rs12793476	A	G	2582.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr11	122720742	rs147669776	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	122722300	rs3741018	A	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	122738062	rs57365669	CAA	C	356.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.78;ReadPosRankSum=0.812;SOR=1.627;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr11	122738261	rs2272094	A	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr11	122775227	rs3107630	T	C	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	122805948	rs113946401	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=-0.051;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr11	122928622	rs4802	A	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr11	122928875	rs4936770	C	T	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	122929407	rs1064585	T	G	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	122929624	rs1461496	A	G	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr11	122930108	rs76152311	T	TTG	7326.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	122931075	rs149047184	A	AC	1170.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:7,49:0.88:56
chr11	122931213	rs1461497	C	T	6012.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	122931528	rs3057456	AAC	A	2563.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr11	122931625	rs41361350	G	A	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr11	122932123	rs10892958	C	G	169.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	122945667	.	G	GT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=2.546;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr11	123065683	rs2302605	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	123154795	rs144580490	TCTTA	T	1068.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	123154816	rs12289554	A	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.46;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	123154894	rs149387350	TTC	T	2074.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=35.77;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr11	123396674	rs35709687	G	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	123431391	.	CGTGT	C	1609.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=43.51;ReadPosRankSum=1.592;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:1,36:0.97:37
chr11	123455101	rs113013432	T	TG	467.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr11	123455109	rs115338953	G	A	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:3,11:0.79:14
chr11	123455124	rs116184013	G	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=-2.287;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr11	123464637	rs1148101	G	C	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	123524295	rs68105605	T	A	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	123524411	rs3851102	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	123598941	rs2282644	T	C	3813.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr11	123676231	rs4936845	G	T	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	123753937	rs1939927	A	G	2369.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.69;ReadPosRankSum=-1.027;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:2,94:0.98:96
chr11	123754073	rs4587739	A	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	123754844	rs10893099	T	C	5099.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr11	123754929	rs61366176	CA	C	56.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=2.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.16;ReadPosRankSum=0.577;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr11	123777049	rs10750249	G	T	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	123777497	rs10750250	GC	AT	11651.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr11	123777536	rs7926767	G	A	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr11	123777736	rs10790610	T	C	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr11	123777986	rs7942047	T	C	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr11	123778031	rs7927385	G	A	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	123813823	rs7129884	G	A	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr11	123813940	rs7130003	G	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr11	123814489	rs4936859	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	123847392	rs10893117	G	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr11	123886308	rs11219407	A	G	9716.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr11	123886320	rs12224056	A	G	9397.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr11	123886352	rs547068	T	C	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	123886865	rs4084209	T	A	17071.77	.	AC=2;AF=1.00;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	1/1:0,627:1.00:627
chr11	123887184	rs4936882	T	G	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr11	123887314	rs517598	T	A	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=58.39;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	123893984	rs148015773	A	C	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.150;MLEAC=1;MLEAF=0.500;MQ=39.96;MQRankSum=-0.139;QD=38.67;ReadPosRankSum=-0.762;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,26:0.93:28
chr11	123893988	rs145930558	C	T	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=3.163;MLEAC=1;MLEAF=0.500;MQ=39.75;MQRankSum=-0.288;QD=37.09;ReadPosRankSum=0.198;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:2,28:0.93:30
chr11	123894136	rs28499345	A	G	6170.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.51;QD=29.81;SOR=2.408;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr11	123894234	rs11219413	A	G	16159.77	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:1,622:1.00:623
chr11	123894402	rs12221656	A	G	9900.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr11	123909627	rs11219420	T	C	8953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.815;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=6.387;MLEAC=1;MLEAF=0.500;MQ=53.20;MQRankSum=3.042;QD=36.55;ReadPosRankSum=-2.300;SOR=1.340;set=HC	GT:AD:AF:DP	0/1:30,215:0.88:245
chr11	123909637	rs4936889	G	T	9718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.170;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=4.733;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=4.215;QD=34.10;ReadPosRankSum=-0.487;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:30,255:0.89:285
chr11	123909695	rs3894197	G	C	9906.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr11	124006972	rs2276054	G	T	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr11	124006993	rs2276053	G	A	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	124015796	rs17690410	C	A	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	124015994	rs1056615	C	T	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr11	124016366	rs2282505	C	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	124016740	rs9326269	A	T	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	124029037	rs4936895	G	A	2291.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr11	124029075	rs4935866	G	A	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr11	124029292	rs1893011	G	A	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	124029541	rs4936896	A	G	9736.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	124056377	rs2512228	T	C	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr11	124056581	rs2466584	A	G	5632.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr11	124056732	rs2512227	T	G	4373.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr11	124056787	rs2512226	G	A	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr11	124135090	.	A	T	1016.77	.	AC=1;AF=0.500;AN=2;DP=155;set=Intersection	GT:AD:AF:DP	0/1:99,55:0.36:154
chr11	124189306	rs2466620	G	A	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr11	124189729	rs2512219	C	T	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr11	124190137	rs2466621	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	124266912	rs28398895	A	G	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr11	124267177	rs61910862	T	C	3454.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,139:0.99:141
chr11	124267189	rs507335	T	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.20;QD=25.40;SOR=1.928;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr11	124293767	rs2188707	G	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	124294236	rs4057749	A	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	124294377	rs4057750	A	G	7549.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr11	124494780	rs113773557	A	AT	258.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	124539236	rs512225	C	T	4734.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr11	124622193	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.196;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.850;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr11	124739332	rs11219820	A	C	113.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	124793682	rs10790715	T	C	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr11	124856951	rs4608089	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr11	124861269	rs4936967	C	T	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	124946758	rs61912691	A	G	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr11	124947112	rs61912693	C	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	124951311	rs75801851	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr11	124954282	rs948270	A	G	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr11	124954369	rs948269	G	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	124954652	rs4936976	G	C	6320.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr11	124955032	rs948268	T	C	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	124955977	rs3808995	C	T	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr11	124957803	rs7929462	C	T	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	124958122	rs3802808	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr11	124967487	rs1043821	T	A	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	124967678	rs3737350	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr11	124972208	rs14065	A	G	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr11	124972377	rs2155663	C	T	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	124972518	rs2155664	A	G	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.15;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr11	124972522	rs2155665	T	C	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.99;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr11	124972691	rs2155666	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	125009529	rs11219919	G	A	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr11	125009543	rs74844643	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr11	125298871	rs595849	A	G	10042.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr11	125323965	rs11220082	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr11	125326026	rs2241514	C	T	7499.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr11	125442503	rs369141998	CT	C	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.951;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:121,40:0.25:161
chr11	125445680	rs61493355	A	AT	745	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.248;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.621;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:12,48:0.80:60
chr11	125452094	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-2.395;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:23,8:0.26:31
chr11	125452300	rs55912941	A	AC	4889.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr11	125462162	rs573173	A	G	4406.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr11	125467144	rs513209	C	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr11	125482345	rs538232	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	125488247	.	CT	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=6.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.183;SOR=0.197;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr11	125490765	.	AT	A	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.203;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=1.012;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.415;QD=2.23;ReadPosRankSum=-0.233;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:59,37:0.39:96
chr11	125514573	rs521102	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	125525195	rs506504	A	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	125616483	rs498803	G	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	125616502	rs2553829	T	A	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr11	125617317	rs496459	A	G	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr11	125617376	rs5795459	CT	C	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	125617606	rs537916	G	A	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	125617769	rs542285	C	T	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	125617881	rs541350	T	C	369.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr11	125647712	rs522690	T	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	125648216	rs517463	C	T	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	125648503	rs494361	G	A	8077.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr11	125659423	rs495869	A	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	125707761	rs11220236	A	C	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr11	125708198	rs10160391	C	T	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	125763566	rs141738016	TC	T	291.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr11	125763746	rs3088241	C	G	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr11	125766044	rs549990	C	A	8230.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr11	125766173	rs622756	A	C	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr11	125766204	rs600761	G	C	4909.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.386;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	125766207	rs471980	C	T	4909.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=1.386;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	125769354	rs667782	T	C	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr11	125776216	rs34692223	A	ATT	1013.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr11	125776259	rs681416	G	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr11	125778074	rs5795465	AT	A	1805.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:5,100:0.95:105
chr11	125780194	rs2272104	C	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr11	125788678	rs683155	T	C	4109.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr11	125810571	rs4937070	T	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	125810663	.	C	CT	233.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.70;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	125830970	rs684535	A	T	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	125859783	rs1939985	T	C	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr11	125864972	rs138741332	AAAC	A	908.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.29;QD=39.51;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	125867053	rs11220309	G	T	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr11	125873639	rs512761	G	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	125891103	rs3832751	C	CA	2112.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	125891269	rs3740912	C	T	6463.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr11	126080757	rs608367	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr11	126081336	rs587891	T	C	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr11	126081403	rs2282580	T	C	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr11	126134698	rs638766	T	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.80;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	126138453	rs12786155	C	T	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr11	126139100	rs1786702	T	C	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr11	126139313	rs1786703	T	A	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr11	126145931	rs2276025	T	C	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr11	126146244	rs56321210	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr11	126160687	rs1893352	A	G	6357.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr11	126161490	rs614700	T	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr11	126162607	rs3802814	G	A	7303.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr11	126162843	rs8177374	C	T	8264.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr11	126163124	rs609634	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr11	126163691	rs611953	A	G	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr11	126164349	rs625413	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr11	126176578	rs637462	G	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr11	126213395	rs240536	T	C	7318.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr11	126294817	rs948052	G	A	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr11	126301449	rs3802816	T	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr11	126301481	rs3802817	T	A	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr11	126305279	rs4937132	C	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr11	126310082	rs878830	A	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	126315024	rs3802819	T	C	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr11	126316610	rs1574534	C	T	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	126396674	rs674537	G	A	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr11	126873226	rs7115473	G	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr11	126873592	rs494442	C	T	12710.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr11	126873721	rs11377295	G	GC	4520.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr11	126968477	rs10893631	C	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	128350409	rs139204197	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr11	128391937	rs61907765	C	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	128396738	rs7117118	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	128443083	rs7935676	G	C	2410.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	128443099	rs7935393	A	C	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr11	128638216	rs35044982	TG	T	5341.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr11	128652012	rs639336	G	T	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr11	128652053	rs3216814	A	AG	4331.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr11	128708947	rs1231254	T	A	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr11	128781339	rs6590357	T	C	12801.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:2,487:1.00:489
chr11	128781978	rs7118824	T	G	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr11	128782002	rs7118833	T	C	9952.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.65;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,218:1.00:218
chr11	128782012	rs7102584	C	G	8593.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr11	128786139	.	A	AGATGGATGGATG	528.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr11	128786294	rs4937391	G	A	4653.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr11	128804789	rs2155548	C	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	128842243	rs77561606	A	T	228.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr11	128842251	rs76301868	G	T	245.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.11;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr11	128846547	rs665619	C	A	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr11	128846664	rs10893943	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	128855747	.	GTGTGTGTATA	G	63	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=3;MGOF=26;MMLQ=28;MQ=61.53;NF=3;NR=2;PP=63;QD=13.2;SC=GTGTGTGTGTGTGTGTGTATA;SbPval=0.71;Source=Platypus;TC=7;TCF=4;TCR=3;TR=5;WE=128855770;WS=128855737;set=Platypus	GT:AD:AF:DP	1/0:2,5:0.71:7
chr11	128868090	rs669678	G	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	128868239	rs670440	T	C	9107.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,344:1.00:344
chr11	128932128	rs35714464	A	AG	6846.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr11	128934033	rs61104154	T	TAAA	128.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr11	129061849	rs2511810	G	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr11	129746704	rs137901843	C	T	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr11	129755669	rs1783914	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr11	129940806	rs112826009	A	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.27;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr11	129998900	rs651935	T	C	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr11	130060612	rs858704	A	G	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr11	130064223	rs610005	A	G	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr11	130064647	rs597661	G	A	9378.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr11	130064705	rs597576	A	G	4579.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr11	130064747	rs58417767	ATGTGTGTG	A	973.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;MQ=60.93;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr11	130066335	rs476106	C	T	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr11	130066372	rs858713	G	A	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr11	130066452	rs11368852	G	GC	12173.73	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:3,407:0.99:410
chr11	130068554	rs11221995	C	T	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr11	130069704	rs2276117	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr11	130069790	rs613501	T	G	5584.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr11	130332338	rs11604959	A	G	13346.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr11	130339312	rs731446	T	C	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	130780225	rs681982	C	A	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr11	130780270	rs1237478	C	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr11	131530083	rs2472253	G	C	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr11	131531000	rs2739287	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	131531015	rs2658857	T	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr11	131781634	rs11222836	G	A	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr11	132812642	rs12575270	G	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr11	133788869	rs10791338	A	G	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr11	133792021	rs596430	T	C	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr11	133794599	rs329670	TG	CT	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr11	133800773	rs12796441	C	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=2.468;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr11	133800773	.	CCG	ACA	918	.	AC=2;AF=1.00;AN=2;BRF=0.08;FR=1.0000;HP=2;HapScore=1;MGOF=18;MMLQ=26;MQ=60.0;NF=19;NR=5;PP=918;QD=40.4778281193;SC=GGAAGGGAGCCCGCAGAGTGC;SbPval=0.53;Source=Platypus;TC=30;TCF=24;TCR=6;TR=24;WE=133800783;WS=133800771;set=Platypus	GT:AD:AF:DP	1/1:6,24:0.80:30
chr11	133800775	rs11223628	G	A	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr11	133814191	rs595986	A	G	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,176:0.99:178
chr11	133815981	rs10894768	C	G	7589.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr11	133816224	rs10894769	C	T	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr11	134054705	rs10591322	TACACAC	T,TAC	3816.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=152;set=Intersection	GT:AF:DP	1/2:0.18,0.82:99
chr11	134072616	.	G	GA	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=7.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=-0.782;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr11	134093662	rs144391118	C	T	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr11	134105030	rs1259022	A	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr11	134126612	rs473041	T	C	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr11	134132559	rs561945	G	A	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr11	134151975	rs472287	G	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr11	134152030	rs10791352	G	A	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=25.77;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr11	134182375	rs2509062	G	A	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr11	134188851	rs5795879	A	AT	724.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.71;ReadPosRankSum=1.471;SOR=0.244;set=HC	GT:AD:AF:DP	0/1:9,48:0.84:57
chr11	134234081	rs11601964	G	C	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr11	134234186	rs60460137	G	A	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr11	134239888	rs80082975	G	A	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr11	134244123	rs3741097	C	G	6216.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	235022	rs12822449	C	T	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	235128	rs11608642	T	C	2537.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	248202	rs56204927	C	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	250130	rs12321262	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	271022	rs12579600	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	271373	rs4980805	A	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	271386	rs11307485	CT	C	940.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	274572	rs11061700	G	C	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	274647	rs4980859	T	C	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	274839	rs2291923	T	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	275065	rs2291922	A	G	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	280349	rs2291919	C	A	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	283642	rs2291917	C	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	284058	rs216230	T	C	12694.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:2,488:1.00:490
chr12	301843	rs646569	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	305254	rs533572	T	C	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	306124	rs150908861	CTG	C	983.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	309955	rs35653444	G	A	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:1,210:1.00:211
chr12	310113	rs4980863	A	G	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	319111	rs526690	T	C	8696.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr12	319125	rs557881	A	G	8007.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	332362	rs2289954	C	T	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	432200	rs140378196	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	464254	rs3759371	T	C	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	495217	rs10774152	G	T	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	496439	rs7965303	A	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	496533	rs10848877	C	T	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	498267	.	CGG	C,CG	1999.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.10;MQRankSum=0.265;QD=24.09;ReadPosRankSum=0.262;SOR=0.929;set=HC	GT:AD:AF:DP	1/2:2,56,25:0.67,0.30:83
chr12	537828	rs11062934	G	T	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	537841	rs35713455	T	TA	933.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:2,25:0.93:27
chr12	540994	rs7310504	A	G	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	550911	rs34054482	CT	C	861.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.661;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.651;QD=9.07;ReadPosRankSum=-0.352;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:20,75:0.79:95
chr12	661458	rs10588224	TACAC	T,TAC	989.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.84;MQRankSum=0.429;QD=26.05;ReadPosRankSum=0.547;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:1,11,26:0.29,0.68:38
chr12	675441	rs4980836	T	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	719681	rs2535405	G	A	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	752327	rs6489690	C	A	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	752998	rs9669247	G	A	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	862641	rs3088353	T	G	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	862989	rs3168640	T	C	8885.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr12	863517	rs3858703	G	A	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	974308	rs141823469	T	TC	13289.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr12	974355	rs11441897	T	TC	17829.73	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr12	987533	rs5795952	C	CT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.535;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:57,17:0.23:74
chr12	990912	rs956868	A	C	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	991009	rs7953912	C	T	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	994487	rs7955371	G	C	6242.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	995291	rs11450919	G	GT	734.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr12	998365	rs12828016	G	T	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	999762	rs2255390	A	G	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	1003837	rs2301880	C	T	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	1017197	rs4766334	C	T	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	1022452	rs1051669	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	1035947	rs6489763	C	A	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	1038742	rs4766377	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	1040373	rs7303748	T	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	1221221	rs74679668	T	TAG	486.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	1372114	rs2286031	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	1480878	.	GC	AT	167	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=51.42;NF=4;NR=0;PP=167;QD=55.1169687156;SC=GGGGTGAATGGCGCTGTTGGC;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=4;WE=1480887;WS=1480872;set=Platypus	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	1675847	rs73030956	G	A	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	1748766	rs6489313	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	1748834	rs2270036	T	C	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	1889823	rs767870	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.118;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	1889920	rs10848575	TT	AA	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	1902766	rs2058111	T	G	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	1904726	rs3078853	G	GAC	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	1909407	rs117240148	C	T	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	1919543	rs2286377	C	T	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	1919635	rs147251076	AGCT	A	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	1937511	rs10437823	T	C	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	1950011	rs58188909	A	AC	8724.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	1955664	rs7137553	G	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=2.252;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	1955668	rs7138458	C	A	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.53;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	1955890	rs7137876	T	C	8761.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	1967947	rs2286369	C	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	1969262	rs10848582	T	C	7953.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	1993337	rs2429184	T	C	2058.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	1995042	rs10774003	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	1995403	rs10735005	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	2016550	rs112521420	A	ATTGTC	1087.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	2016938	rs113797488	AGCCTGGTGAGTAT	A	9108.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,207:0.99:209
chr12	2019322	rs8181786	G	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	2022411	rs1558142	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	2024316	rs758157	A	G	17908.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr12	2038978	rs79802812	G	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	2039155	rs200831723	GGGGAGGAGGAGGAAGAGA	G	474.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.49;QD=39.56;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	2055266	rs7222	T	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	2058245	rs2240612	T	C	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.233;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	2062323	rs149912567	T	TTGC	6267.73	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:28,285:0.91:313
chr12	2062350	.	C	CTGT	1714	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=28;MQ=59.79;NF=23;NR=67;PP=1714;QD=19.1222222222;SC=GCTGCTGCTGCTGGTGGAGAG;SbPval=0.36;Source=Platypus;TC=154;TCF=35;TCR=119;TR=90;WE=2062358;WS=2062340;set=Platypus	GT:AD:AF:DP	0/1:64,90:0.58:154
chr12	2077897	rs2470425	G	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	2107036	rs2302098	T	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	2113348	rs7298333	A	C	16525.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr12	2224228	rs2299661	C	G	237.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	2602307	rs56412831	C	G	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	2659848	rs10848675	T	C	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	2676683	rs2370602	C	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	2690702	rs11832738	G	A	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	2692186	rs3751254	T	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	2706720	rs215983	G	C	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	2743360	rs10713529	CT	C	295.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;QD=16.43;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	2757756	rs2239127	T	C	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	2757769	rs2239128	T	C	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	2757782	rs2239129	C	T	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	2760708	rs216045	G	A	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	2760970	rs1990322	G	A	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	2773855	rs7315556	G	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	2774668	rs2302728	C	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	2783476	rs7136355	T	C	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	2788810	rs72552065	C	T	24223.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	1/1:0,925:1.00:925
chr12	2788879	rs1051375	G	A	16023.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr12	2791130	rs10848683	C	T	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	2791130	.	CGA	TGG	877	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=11;MMLQ=23;MQ=60.0;NF=17;NR=1;PP=877;QD=51.6926597146;SC=AGGCACGTTCCGATGTGTGAG;SbPval=0.63;Source=Platypus;TC=18;TCF=17;TCR=1;TR=18;WE=2791140;WS=2791120;set=Platypus	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	2791132	rs10774053	A	G	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	2791205	rs10774054	A	G	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	2795255	rs2270373	C	T	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;QD=25.92;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	2851185	rs12319038	A	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	2851259	rs12319097	A	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	2851357	rs10774059	C	T	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.38;QD=41.78;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	2851365	rs4765989	T	C	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.68;QD=44.47;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	2876636	rs4313632	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.89;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	2907087	rs41456246	G	A	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	2937013	rs4765998	G	C	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	2968458	rs2215292	T	C	9516.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	2983820	.	A	C	380.77	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	2997058	.	C	CT	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=-0.872;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:46,16:0.26:62
chr12	3046965	.	CA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.370;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr12	3127652	rs2159411	A	G	4320.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	3147080	rs3741951	C	T	5421.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	3310439	rs740776	C	T	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	3310482	rs740775	C	G	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	3315433	rs2058243	A	G	5999.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	3387521	rs651196	C	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	3387555	rs651243	C	T	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	3387865	rs663134	C	A	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	3390804	rs605613	C	T	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	3391032	rs564247	T	G	4959.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,196:0.99:197
chr12	3392118	rs11611152	C	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	3392351	rs632887	A	G	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr12	3409149	rs55979725	G	A	11857.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr12	3409277	rs7306401	C	T	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	3490820	rs10848860	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	3600967	rs757609	T	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.730;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	3750070	rs4766151	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	3751046	rs7297853	T	C	6619.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	3753975	rs7975304	T	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	3757548	rs887304	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	3768705	rs10848906	C	A	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	3787956	rs242019	A	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	3948718	rs3809251	G	A	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	3982657	rs4766179	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	4388084	rs3217805	C	G	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	4430547	rs10774222	C	T	4640.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	4430561	rs11063080	C	G	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	4446116	rs7296163	T	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	4461485	rs7133330	G	A	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	4537658	rs2970806	G	A	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	4554548	rs7358740	G	C	22196.77	.	AC=2;AF=1.00;AN=2;DB;DP=863;set=Intersection	GT:AD:AF:DP	1/1:0,860:1.00:860
chr12	4671611	rs7306848	CG	GA	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	4697987	rs2041295	A	T	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.82;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	4697991	rs2041294	AT	GG	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	4700221	rs2302248	G	T	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	4705317	rs3741925	C	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	4708150	rs3741926	T	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	4708439	.	T	TTG	211.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.30;MQRankSum=0.828;QD=10.09;ReadPosRankSum=-0.453;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chr12	4714008	rs2286576	T	G	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	4725134	rs7301885	G	A	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	4735737	rs2072358	A	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	4736495	rs1990312	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	4736631	rs11063265	A	G	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	4736677	rs11063266	G	C	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	4736690	rs10774251	A	G	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	4737318	rs7960207	A	G	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	4737459	rs2072356	C	T	4011.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr12	4737715	rs2072355	C	T	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	4758188	rs714621	G	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	4763780	rs3217056	GCA	G	1619.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	4768354	rs7972657	A	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	4768437	rs7958182	C	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	4771682	rs2267549	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	4779087	rs1009633	A	G	240.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	4854539	rs34073667	T	TC	809.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	4874518	rs145166695	CTT	C	75.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.74;ReadPosRankSum=0.484;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr12	4959874	rs10774275	T	C	5282.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	5021984	rs4766309	T	A	7298.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	5154462	rs2359641	T	C	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr12	5603632	rs6332	G	A	15427.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr12	5674754	rs2277398	G	A	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	5721962	rs3741837	A	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	5756783	rs2277400	C	G	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	5756824	rs367978	C	T	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	5841841	rs2277401	G	C	9873.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	5860179	rs2277402	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	5916350	rs2277403	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	5961048	rs7485945	G	A	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	6032129	rs12817045	A	G	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.43;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	6032138	rs12817050	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	6054277	rs6416321	G	A	9278.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	6054395	rs6489680	A	G	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	6055132	rs6489682	T	G	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	6078616	rs2270239	T	G	3053.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	6085513	rs216855	A	G	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	6090825	rs216866	T	C	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	6091000	rs216867	A	G	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	6091164	rs216868	G	A	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	6092567	rs138350612	G	GGATAGATAGATA	751.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	6092629	rs10535241	TGATA	T	56	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	6094845	rs177702	G	A	5132.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	6102902	rs216900	C	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	6105387	rs216902	G	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	6172202	rs1800378	T	C	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	6204902	rs5796209	CA	C	1035.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	6230288	rs6489694	A	G	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	6232426	rs2286608	G	A	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	6344600	rs2072372	C	A	6414.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr12	6345199	rs3181300	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	6352292	rs9668222	T	A	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	6422272	rs10849440	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	6439255	rs10849443	A	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	6440009	rs1800693	T	C	1974.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	6442346	rs1800692	A	G	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	6457062	rs2228576	T	C	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	6483463	rs3741914	T	C	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	6493911	rs2302255	C	T	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	6495275	rs2364480	C	A	7683.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:1,286:1.00:287
chr12	6495635	rs5796232	C	CA	1296.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;MQ=61.01;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr12	6551618	.	CAA	C	404.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.983;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=0.532;QD=16.20;ReadPosRankSum=0.261;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr12	6551899	rs2886090	C	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	6560473	rs2532502	A	G	5765.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	6560573	rs1059501	G	T	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	6561603	rs151118790	CAG	C	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	6562285	rs2041384	C	T	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	6562293	rs2041385	C	T	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=1.451;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	6562753	rs2532501	A	G	3900.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr12	6562810	rs2532500	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	6562823	rs2041387	C	T	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	6562836	rs2041388	G	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	6565750	rs10774432	A	G	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=24.71;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	6567541	.	T	TA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.153;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.415;QD=2.92;ReadPosRankSum=-0.202;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:48,27:0.36:75
chr12	6567787	rs2243750	T	C	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	6569983	rs2243977	C	T	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	6570163	rs2534710	C	T	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	6572048	rs1045452	A	G	4650.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	6572191	rs12964	T	C	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	6573061	rs2534714	A	G	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	6573146	rs2534715	T	C	6682.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	6573716	rs2534716	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	6573749	rs2534717	C	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	6574301	rs1017101	G	T	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	6574524	.	G	GTATA	279	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=6;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=5;PP=279;QD=58.0;SC=AAAGAAAAAAGTATATATATA;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=5;WE=6574532;WS=6574514;set=Platypus	GT:AD:AF:DP	1/1:5,5:0.50:10
chr12	6575044	rs2072375	G	T	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:1,129:0.99:130
chr12	6575191	rs2534718	A	T	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	6579565	rs2534720	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	6579757	rs2532489	T	C	5279.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	6671154	rs370604185	AT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=1.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=0.321;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:36,15:0.29:51
chr12	6691968	rs147831032	T	G	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	6749093	rs2365087	A	G	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	6754518	rs10849493	G	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	6762026	rs4764506	T	C	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	6777069	rs3835029	TTGC	T	736.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=4.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.789;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:144,36:0.20:180
chr12	6804902	rs10849498	A	G	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	6835068	rs7487866	A	G	7495.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	6835081	rs2365100	G	A	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	6836795	rs188585104	T	G	5333.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	6836852	rs7138427	A	G	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	6836913	rs2178691	G	T	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	6839453	rs871365	G	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	6840126	.	TTC	T	76	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=28;MQ=60.0;NF=2;NR=2;PP=76;QD=21.25;SC=ATTCCCTGCATTCTCTCTCTC;SbPval=0.63;Source=Platypus;TC=24;TCF=13;TCR=11;TR=4;WE=6840135;WS=6840116;set=Platypus	GT:AD:AF:DP	0/1:20,4:0.17:24
chr12	6840209	rs3168600	G	A	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	6840371	rs11227	G	T	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	6887020	rs870849	T	C	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:2,263:0.99:265
chr12	6909388	rs2365568	A	G	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	6924718	rs3782736	C	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	6926363	rs1055141	T	C	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	6927470	rs12226953	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	6928075	rs12821756	T	C	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.51;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	6928135	rs55764611	TA	GG	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=3.664;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	6928586	rs7136817	CA	AG	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	6934989	rs2071080	C	T	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	6938023	rs57050687	C	CG	2400.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	6939850	rs10744716	A	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	6940254	rs7305463	A	G	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	6942672	rs4963513	A	C	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.23;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	6942823	rs4963512	A	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	6946545	rs4963510	C	A	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	6948028	rs4963516	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	7026893	rs376463507	A	AG	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	7044647	rs367827860	A	AG	1316.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	7045891	.	ACAG	A	640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=4.733;QD=1.64;ReadPosRankSum=0.759;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:343,47:0.12:390
chr12	7053362	rs915997	A	G	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	7054859	rs2019743	G	A	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	7055860	rs2301262	T	C	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	7065281	rs10744724	C	T	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	7065406	rs7963446	G	A	6217.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	7065576	rs2110071	G	A	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	7065635	rs2110072	T	C	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr12	7069422	rs35119590	TG	T	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.114;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr12	7073184	rs144107895	CCT	C	3443.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	7079062	.	C	CA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=4.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.683;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr12	7079215	rs7301709	T	G	4103.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	7079563	rs73264607	A	G	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	7080210	rs60117710	A	AG	3046.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	7080212	rs17857448	T	C	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	7087711	rs56157656	T	C	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	7090659	rs60570787	A	AG	3847.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	7188501	.	C	T	5551.77	.	AC=2;AF=1.00;AN=2;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	7242950	rs4332595	A	G	101.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	7284484	rs10772466	A	C	4068.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	7287886	rs6488452	A	C	5705.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	7287914	rs2278822	C	T	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	7290391	.	TGA	TGAGA,T	384.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=32;set=Intersection	GT:AF:DP	0/1:0.59:27
chr12	7294657	rs63110460	GT	G	1096.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.960;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.548;QD=9.88;ReadPosRankSum=-0.486;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:25,86:0.77:111
chr12	7301982	rs3816423	A	G	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	7309199	rs7296261	G	A	9999.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	7309471	rs1868799	C	A	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	7309471	.	CGG	AGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=22;NR=61;PP=2947;QD=20;SC=CCAGACGTCCCGGAGCCCCAA;SbPval=0.51;Source=Platypus;TC=92;TCF=24;TCR=68;TR=83;WE=7309481;WS=7309461;set=Platypus	GT:AD:AF:DP	1/1:9,83:0.90:92
chr12	7309473	rs1868800	G	C	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=2.141;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	7351843	rs1839623	T	C	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	7355898	rs4883087	C	G	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	7360143	rs3825405	C	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	7362204	.	G	T	1393	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=56;NR=24;PP=1393;QD=17.8471401568;SC=CAGAGTTTGAGCTGAGTCGGT;SbPval=0.15;Source=Platypus;TC=106;TCF=82;TCR=24;TR=80;WE=7362212;WS=7362194;set=Platypus	GT:AD:AF:DP	0/1:26,80:0.75:106
chr12	7362204	rs141721291	G	GCTGAGTCGGTGGAGTAATGTGCAGAGTTTGAT	3556.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=74.10;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	7463398	rs10843387	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	7463491	rs7962994	C	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	7476237	rs34189415	C	T	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	7477298	rs10743732	G	A	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	7481085	rs11051240	T	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	7521563	rs148414953	TGA	T	102.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,8:0.19:42
chr12	7525795	rs10845007	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	7525865	rs11053518	G	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	7551022	rs6488268	A	T	15639.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr12	7551050	rs6488269	A	C	15903.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:3,596:0.99:599
chr12	7585971	rs10845159	A	G	6059.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	7592035	rs10772330	G	T	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	7592139	rs10772331	G	A	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	7596855	rs7954905	T	C	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	7638020	rs10743939	G	A	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	7649484	rs4883263	T	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	7649653	rs4883264	T	C	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	7655137	rs3210140	A	G	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	7655278	rs11836971	T	A	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	7803562	rs10431308	C	A	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	7805236	rs2302515	C	G	3666.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	7805467	rs2080127	C	T	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	7805511	rs5796282	T	TA	4128.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	7807138	rs10845624	G	A	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	7818348	.	GAC	G	900.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.34;ReadPosRankSum=0.149;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr12	7847940	rs6488591	C	T	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	7848202	rs17727707	G	C	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	7864316	.	CTTTTTTTTTTTT	C	2823.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=8.152;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.437;QD=38.68;ReadPosRankSum=2.111;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:2,71:0.97:73
chr12	7867847	rs2024320	G	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	7868777	rs34619457	A	ATT	2250.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	7868865	rs34547953	C	CTTT	648.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.009;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.95;ReadPosRankSum=0.929;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr12	7898824	rs7134479	A	G	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.72;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	7926369	rs34408824	C	CT	39.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.431;QD=3.62;ReadPosRankSum=-0.601;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr12	7945829	rs4242903	G	C	12897.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr12	7966958	rs10845981	C	T	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	7967135	rs11055945	T	A	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	7970721	rs10845990	T	G	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	7980035	rs10846003	T	C	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	7980306	rs56049529	T	TA	1664.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	7982753	rs202204123	CTT	C	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=28.26;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	7984447	rs10772787	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	7992552	.	C	CA	145	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=7;HapScore=2;MGOF=30;MMLQ=27;MQ=54.25;NF=0;NR=4;PP=145;QD=42.5;SC=AAAAAAAATACAAAAAATTAG;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=4;WE=7992560;WS=7992542;set=Platypus	GT:AD:AF:DP	1/1:1,4:0.80:5
chr12	8074192	rs25684	G	A	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	8088766	rs2541281	T	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	8090271	rs11056574	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=24.09;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	8196445	rs2277414	T	G	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	8235172	rs66928724	GT	G	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:9,59:0.87:68
chr12	8276432	rs7295783	C	T	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	8278181	rs2024301	A	T	9237.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr12	8286762	rs7315526	G	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	8287048	rs11043498	C	T	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	8288098	rs10840746	T	C	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	8289226	rs4322490	G	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	8289300	rs4573763	T	C	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	8374770	rs9668474	G	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	8374781	rs71265055	C	CACG	1177.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	8509551	rs140128258	G	T	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	8543143	rs4403873	T	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	8608583	rs4528410	A	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	8612336	rs10770736	G	C	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	8612481	rs12300621	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	8617976	rs7302011	A	T	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.72;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	8617982	rs7315873	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.07;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	8693240	rs5014225	C	A	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	8693245	.	A	AC	642.74	.	AC=2;AF=1.00;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	1/1:4,34:0.89:38
chr12	8693333	rs4620776	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	8693418	rs11834597	T	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	8757522	rs5796316	C	CA	339.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=0.000;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:5,24:0.83:29
chr12	8758205	.	G	A	685.77	.	AC=2;AF=1.00;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	8765447	rs1345004	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	8926011	rs2969089	T	C	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	8988403	rs4883188	A	C	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	8988777	rs1894814	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	8989916	rs11047510	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	8990813	rs10743504	A	G	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	8995694	rs7307991	A	G	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	8995756	rs7308106	A	G	6085.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	8995966	rs7136813	G	A	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	9004512	rs1860927	G	A	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	9004892	rs1860926	C	A	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	9016573	rs10219561	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	9016665	rs17802489	G	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	9020489	rs7308811	A	G	5822.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	9020912	rs1476910	A	G	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	9021053	rs5796325	C	CGT,CGTGT	2377.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;set=Intersection	GT:AF:DP	1/2:0.12,0.83:65
chr12	9021256	rs12816475	C	T	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	9021316	rs10664353	T	TAC	367.19	.	AC=2;AF=1.00;AN=2;DB;DP=17;MQ=60.63;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr12	9068472	rs10771204	G	T	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	9068813	rs7304121	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9070366	rs4883198	T	A	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	9074259	rs1805741	C	T	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr12	9082855	rs1805778	A	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	9083336	rs1805777	A	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.92;QD=33.47;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9086683	rs1805735	A	T	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	9086898	rs1049925	A	G	8675.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:61,355:0.85:416
chr12	9087906	rs113120861	ATAG	A	1636.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	9090086	rs12371786	G	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	9094548	rs1805765	A	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	9097933	rs1805725	C	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	9142297	rs1805723	T	C	8004.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=3.065;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.17;ReadPosRankSum=-0.490;SOR=0.274;set=HC	GT:AD:AF:DP	1/1:1,317:1.00:318
chr12	9246250	.	C	CA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=2.254;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=1.498;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr12	9248233	rs226405	T	C	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	9253894	rs226397	C	T	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	9258821	rs12427063	A	G	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	9305473	rs10771357	T	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	9307373	rs2377741	T	G	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	9310565	rs4882981	C	T	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	9310576	rs10771364	T	G	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	9310959	rs7298673	C	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	9311265	rs3741850	A	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	9313517	rs200870789	AT	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=1.162;QD=1.52;ReadPosRankSum=1.668;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr12	9313518	rs7972015	T	A	582.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.142;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-1.108;QD=12.14;ReadPosRankSum=-1.646;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr12	9317784	rs2277413	A	G	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	9333749	rs919209	G	A	4236.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	9334728	rs3832849	G	GAGTGAGACAAAATGGTCATA	2132.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr12	9344878	rs2075394	A	G	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	9345273	rs10771407	A	G	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	9345408	rs2075395	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	9346792	rs12230214	G	C	5716.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	9349370	rs11049396	C	CT	636.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,30:0.97:31
chr12	9352908	rs6487668	C	A	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	9446913	rs61916248	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.72;QD=25.53;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	9446932	rs61916249	G	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.64;QD=27.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9447484	rs77482466	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.99;QD=43.44;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	9447488	rs75114985	C	T	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.65;QD=43.61;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	9451370	rs200995345	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.017;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=47.08;MQRankSum=-6.082;QD=7.68;ReadPosRankSum=1.606;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:65,50:0.43:115
chr12	9451397	rs74390404	G	A	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.658;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-4.556;QD=8.51;ReadPosRankSum=-0.010;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:68,60:0.47:128
chr12	9451473	rs141541321	G	A	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=35.33;QD=25.35;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	9451541	.	C	A	107.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.32;QD=26.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	9453656	rs61917368	C	T	408.31	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.383;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=9.031;MLEAC=1;MLEAF=0.500;MQ=51.17;MQRankSum=0.729;QD=25.52;ReadPosRankSum=-0.730;SOR=5.421;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr12	9453743	rs28415351	C	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.48;QD=27.06;SOR=1.775;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	9453864	rs61917370	A	G	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	9455428	rs11050141	A	G	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	9458412	rs10743653	G	C	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.15;QD=26.48;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	9459648	.	G	A	258	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=25;MQ=43.61;NF=17;NR=5;PP=258;QD=13.3077823885;SC=CTGTGGGCTGGTTGTCCTAGA;SbPval=0.36;Source=Platypus;TC=73;TCF=60;TCR=13;TR=22;WE=9459656;WS=9459641;set=Platypus	GT:AD:AF:DP	1/0:51,22:0.30:73
chr12	9459854	rs9971685	G	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.72;QD=26.77;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	9459898	rs2911825	G	T	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.48;QD=31.05;SOR=4.909;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	9462709	rs2889720	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	9463010	rs4883234	C	G	12174.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;MQ=59.09;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr12	9463077	rs10771513	A	C	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	9463806	rs10771515	T	C	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	9464109	rs12824979	A	G	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,56:0.37:150
chr12	9464126	rs201695391	A	G	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:137,103:0.43:240
chr12	9464133	rs10843383	C	G	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:113,155:0.58:268
chr12	9464178	rs112191067	G	A	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.228;ClippingRankSum=0.000;DB;DP=565;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-13.763;QD=8.72;ReadPosRankSum=1.823;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:308,254:0.45:562
chr12	9464241	rs61917427	C	A	4109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=4.403;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-19.527;QD=5.10;ReadPosRankSum=4.002;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:549,257:0.32:806
chr12	9464271	.	C	CGTT	4985.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=723;ExcessHet=3.0103;FS=13.614;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-20.796;QD=7.17;ReadPosRankSum=-3.299;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:532,163:0.23:695
chr12	9465872	rs4012572	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9549634	rs11308534	AG	A	151.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9554954	rs199562811	G	C	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.53;MQRankSum=-1.915;QD=6.64;ReadPosRankSum=1.803;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr12	9555110	rs12821647	A	G	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.88;QD=28.42;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	9555175	rs374009125	C	T	142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.27;MQRankSum=-4.269;QD=1.39;ReadPosRankSum=1.071;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:84,19:0.18:103
chr12	9555185	rs72475431	A	G	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.86;QD=34.98;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	9555195	rs58903301	T	TC	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=51.24;MQRankSum=-2.088;QD=4.64;ReadPosRankSum=5.083;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr12	9555201	rs199717489	C	A	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:80,19:0.19:99
chr12	9571547	rs61916776	C	G	5596.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	9571599	rs73242993	C	A	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	9571670	rs77617533	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	9572244	rs7305608	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	9572788	rs145731114	C	CGCACCTGGAT	4432.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	9572819	rs10843740	C	T	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.34;QD=29.85;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	9572871	rs10843741	T	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.63;QD=28.69;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	9573130	rs7358608	C	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr12	9573224	rs7358609	C	T	2458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.495;MLEAC=1;MLEAF=0.500;MQ=56.07;MQRankSum=3.242;QD=16.73;ReadPosRankSum=0.418;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:34,113:0.77:147
chr12	9573291	rs67766754	AAGGG	A	2815.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.43;QD=44.00;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	9573308	.	AG	A	1213	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=4;HapScore=1;MGOF=21;MMLQ=28;MQ=66.21;NF=2;NR=29;PP=1213;QD=39.9677419355;SC=GGAGGGAGGGAGCCCCCATGG;SbPval=0.57;Source=Platypus;TC=32;TCF=2;TCR=30;TR=31;WE=9573317;WS=9573277;set=Platypus	GT:AD:AF:DP	1/1:1,31:0.97:32
chr12	9573309	.	G	GCCC	2938.73	.	AC=2;AF=1.00;AN=2;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.77;QD=44.53;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	9573338	rs4763950	G	A	1964.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	9574002	rs10771709	C	T	9718.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	9574042	rs7298124	C	A	14682.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:2,562:1.00:564
chr12	9574119	rs4764050	A	G	11880.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr12	9574344	rs4237949	T	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	9574480	rs7132464	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.21;QD=31.63;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9577027	rs3825308	C	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	9577310	rs7296629	A	C	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	9577992	rs201150453	C	T	1005.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.365;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=9.360;MLEAC=2;MLEAF=1.000;MQ=45.95;MQRankSum=-1.776;QD=29.58;ReadPosRankSum=-0.673;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:2,32:0.94:34
chr12	9578197	rs76671194	A	T	12532.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr12	9580203	rs58705479	G	C	15806.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:2,608:1.00:610
chr12	9580293	rs200454162	A	G	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.357;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=25.121;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-16.836;QD=2.79;ReadPosRankSum=-4.449;SOR=2.472;set=HC	GT:AD:AF:DP	0/1:349,85:0.20:434
chr12	9580303	rs201526991	A	G	1318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.277;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=64.230;MLEAC=1;MLEAF=0.500;MQ=56.68;MQRankSum=-14.616;QD=3.55;ReadPosRankSum=-0.480;SOR=3.735;set=HC	GT:AD:AF:DP	0/1:316,56:0.15:372
chr12	9580395	rs61914681	C	G	2982.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.82;QD=40.31;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	9580395	.	CCTCTGAGG	GCTCTGAGA,GCTCTGAGG	1101	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.42;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=6;MMLQ=23;MQ=42.3;NF=0,2;NR=45,68;PP=1101,191;QD=25.6548416636;SC=AGCTCTGGGCCCTCTGAGGGC;SbPval=1.0;Source=Platypus;TC=70;TCF=2;TCR=68;TR=45,70;WE=9580411;WS=9580385;set=Platypus	GT:AF:DP	0/1:0.64:70
chr12	9582052	.	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:86,57:0.40:143
chr12	9582244	rs201653123	G	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=8.368;MLEAC=1;MLEAF=0.500;MQ=44.82;MQRankSum=3.500;QD=18.64;ReadPosRankSum=2.233;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chr12	9583216	rs3864916	T	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.02;QD=44.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	9583221	rs3864915	G	A	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.12;QD=42.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	9583324	rs4012577	G	A	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.09;QD=26.22;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	9584916	rs3882934	C	T	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.84;QD=22.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	9584991	rs2553132	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.58;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	9585598	rs200479049	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.21;QD=25.95;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	9589580	rs12425701	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.50;QD=24.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	9589681	rs77571608	C	G	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.49;QD=25.57;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	9589717	.	G	T	547.77	.	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.98;QD=24.90;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9590164	.	T	C	616.77	.	AC=1;AF=0.500;AN=2;DP=159;set=Intersection	GT:AD:AF:DP	0/1:119,40:0.25:159
chr12	9590197	rs61914700	T	C	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	9590505	rs201948852	G	A	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.19;QD=27.72;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	9633258	rs4015230	A	G	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.46;QD=25.35;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	9633375	rs4015231	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	9664292	rs10843926	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.32;QD=28.81;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	9688883	rs2536903	A	C	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.36;QD=25.23;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	9692918	rs199651672	G	T	209.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.24;QD=29.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9693196	rs138943288	G	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.47;QD=27.71;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	9707098	rs7309655	C	T	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=29.47;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	9711954	rs2536846	A	T	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.12;QD=32.25;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	9712911	rs200418990	G	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.00;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	9725847	rs78525383	T	G	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9747744	rs3214342	T	TA	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	9750669	rs1135816	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	9751035	rs3072716	C	CAT	2094.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	9754221	rs3072720	A	AAAAC	6093.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=44.16;SOR=1.398;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	9832822	rs2114872	C	T	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	9832882	rs2114873	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	9833524	rs3764022	C	G	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	9833628	rs3764021	C	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	9846521	rs7968401	C	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	9869271	rs2268146	A	G	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	9885526	rs12304510	C	T	3584.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	9885707	rs71045297	A	ATAAGT	9530.73	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	9906067	rs1051065	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	9906350	rs57931161	GA	G	114.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	9980243	rs2232543	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	9984847	rs2232546	A	C	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	9994445	rs33911869	GTGT	G	2262.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	10015082	rs253147	G	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	10015177	rs253146	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	10015320	rs148291947	G	GAGA	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.20;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	10037494	rs138111463	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	10041364	rs1797517	G	A	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	10041450	rs17806628	G	A	6168.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	10051433	rs1407899	A	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	10051719	.	T	TA	200.73	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,13:0.87:15
chr12	10069302	rs526680	C	T	7532.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	10146005	rs11412323	C	CA,CAA	414.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.74;ReadPosRankSum=1.567;SOR=0.693;set=HC	GT:AD:AF:DP	1/2:1,11,8:0.55,0.40:20
chr12	10149851	rs583903	C	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	10150974	rs2273986	A	G	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	10151642	rs612593	T	C	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	10151762	rs11379994	T	TC	9464.73	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	10163375	rs1359082	C	A	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	10163379	rs1359083	C	T	5185.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	10165469	rs476474	A	G	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	10167277	rs637790	G	C	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	10206925	rs7315231	A	G	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	10215582	rs10772230	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	10217326	rs10622534	C	CTT	4349.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	10241553	rs5008763	C	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	10241593	rs1352477	A	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	10241829	rs2277416	G	T	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	10245158	rs11347002	GA	G	315.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	10251256	rs10706436	GA	G	351.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	10251287	rs6488257	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	10251385	rs3816845	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	10251445	rs2306894	C	G	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	10270938	rs11053597	G	T	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	10271055	rs7959451	T	C	5562.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	10271087	rs16910526	A	C	7789.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	10275769	rs7137840	C	T	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	10276001	rs139108713	G	GAGAGAA	2634.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.20;QD=43.91;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	10277733	rs11053615	C	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.14;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	10277740	rs111544843	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.57;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	10277779	rs10717980	CA	C	434.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.537;QD=10.87;ReadPosRankSum=-0.595;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:5,35:0.88:40
chr12	10279524	.	AAAG	A	57.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.923;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr12	10279526	.	AG	A	294.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-1.745;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr12	10312878	rs2634156	C	T	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	10332291	rs2130007	G	A	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	10332358	rs2130008	A	G	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	10370763	rs73058099	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	10373324	rs7301041	T	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	10461883	rs10734825	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	10462052	rs10772256	T	G	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	10462431	rs7980604	G	A	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	10511662	rs10743886	C	T	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	10525644	rs1351113	A	G	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	10525740	rs1049172	C	T	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	10531896	rs2255364	C	T	105.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	10532111	rs2255353	T	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10532326	rs2255336	T	C	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	10532434	rs2617151	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	10560824	rs2617169	T	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	10560957	rs2617170	T	C	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	10561913	rs3214902	TA	T	1868.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	10562025	rs1841957	C	T	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	10562089	rs1841958	A	C	7638.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr12	10565113	rs17548983	T	C	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	10570965	rs2682495	C	G	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	10571042	rs2741882	A	G	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	10571091	rs2682494	T	G	3134.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	10571106	rs2682493	G	C	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	10571158	rs10743890	C	T	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	10571177	rs4394921	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	10571504	rs4579992	C	T	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.98;QD=41.19;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	10571514	rs4275705	C	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.39;QD=47.23;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	10571536	rs33947579	A	AT	614.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.86;QD=27.94;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	10571622	rs4093355	G	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.34;QD=29.20;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	10572544	rs143188402	T	C	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.70;QD=29.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	10572687	rs2682492	G	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	10572839	rs2253365	A	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	10572982	rs2741881	A	G	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.10;QD=26.12;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	10573094	rs2682491	C	G	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.77;QD=45.06;SOR=1.847;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	10573094	.	CA	GG	1833	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5137;HP=1;HapScore=1;MGOF=14;MMLQ=23;MQ=41.94;NF=39;NR=69;PP=1833;QD=17.4672951376;SC=CCTTTGCTGCCACTTTGGGTC;SbPval=0.72;Source=Platypus;TC=124;TCF=50;TCR=74;TR=108;WE=10573103;WS=10573084;set=Platypus	GT:AD:AF:DP	0/1:16,108:0.87:124
chr12	10573095	rs2682490	A	G	4235.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.44;QD=44.12;SOR=1.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	10573145	rs2682489	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=13.108;MLEAC=1;MLEAF=0.500;MQ=43.45;MQRankSum=-1.728;QD=22.36;ReadPosRankSum=-2.391;SOR=3.841;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr12	10573211	rs10734829	A	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.655;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=42.99;MQRankSum=-2.655;QD=11.64;ReadPosRankSum=1.242;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr12	10579308	rs117236878	T	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	10583611	rs3003	C	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	10586921	.	C	T	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=15.086;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-4.226;QD=1.37;ReadPosRankSum=-1.930;SOR=3.781;set=HC	GT:AD:AF:DP	0/1:58,6:0.09:64
chr12	10586946	rs113946028	C	T	930.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=9.284;MLEAC=1;MLEAF=0.500;MQ=50.59;MQRankSum=-3.977;QD=8.78;ReadPosRankSum=-3.477;SOR=1.635;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr12	10586956	rs72475445	C	G	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=5.332;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=-1.855;QD=9.28;ReadPosRankSum=-3.468;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:99,50:0.34:149
chr12	10586961	rs1356930	T	C	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:57,100:0.64:157
chr12	10586978	rs144149096	A	AT	1647.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:129,80:0.38:209
chr12	10586989	rs5796394	AT	A	3584.73	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:108,153:0.59:261
chr12	10587111	rs61917677	A	G	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	10587158	rs35801775	A	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:43,40:0.48:83
chr12	10588530	rs75545535	C	G	1349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=10.773;MLEAC=1;MLEAF=0.500;MQ=56.08;MQRankSum=0.051;QD=6.65;ReadPosRankSum=2.504;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:124,79:0.39:203
chr12	10588581	rs28403159	T	C	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:86,36:0.30:122
chr12	10588647	rs28730284	A	G	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr12	10594848	rs78547237	C	A	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.23;QD=24.75;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	10599347	rs2682471	T	G	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.22;QD=31.67;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	10601782	rs141355168	T	C	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	10602077	rs2734440	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	10603670	rs2253849	T	C	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	10659438	rs10772299	T	C	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	10659964	rs10772300	C	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	10675466	rs73070558	A	C	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	10746385	rs2244387	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	10748216	rs73062497	T	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	10748314	rs2168749	C	T	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	10748403	rs2682484	A	T	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	10759032	rs10772333	T	C	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10760328	rs3947920	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	10760335	rs2125090	T	A	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.76;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	10760380	rs2125089	G	A	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	10762069	rs7311796	G	A	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	10763236	rs10845182	G	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	10763419	rs72054859	CTAGACATG	C	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	10763440	rs12811247	G	T	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	10766244	rs10772335	A	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	10774698	rs2900467	A	G	164.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	10782115	rs3759259	T	C	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	10784021	rs2168746	G	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	10786757	rs5796407	T	TGAA	5031.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	10786797	rs2252664	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	10856845	rs141466000	CA	C	920.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	10871667	rs33016	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.59;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	10958658	rs2537817	T	C	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	10959031	rs1548803	C	T	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	10959210	rs147209838	A	C	8034.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	10962115	rs3741845	A	G	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	10978402	rs597468	G	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	10999708	rs1047699	T	C	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	10999780	rs1063193	C	T	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	11035274	rs28607516	G	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.44;QD=29.58;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	11035368	rs11054060	T	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	11035482	rs10845228	T	C	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	11035533	rs10845229	G	A	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	11061122	rs1015443	T	C	4310.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	11083356	rs116998526	A	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.349;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=13.635;MLEAC=1;MLEAF=0.500;MQ=56.57;MQRankSum=-4.175;QD=3.20;ReadPosRankSum=-0.954;SOR=1.419;set=HC	GT:AD:AF:DP	0/1:253,72:0.22:325
chr12	11083677	rs10772391	T	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	11091432	rs3741843	C	T	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	11138683	rs10772397	C	T	7246.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	11150551	rs4388985	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	11150579	rs1463237	C	T	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	11174181	rs79561087	T	C	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=7.532;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-5.244;QD=6.20;ReadPosRankSum=2.128;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:70,19:0.21:89
chr12	11174186	rs79057393	C	T	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.321;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=8.349;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-5.095;QD=7.09;ReadPosRankSum=1.141;SOR=1.892;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr12	11174202	.	G	C	1283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.539;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=13.169;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-4.375;QD=9.58;ReadPosRankSum=-1.673;SOR=1.986;set=HC	GT:AD:AF:DP	0/1:97,37:0.28:134
chr12	11174213	rs114463974	G	A	1851.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-4.396;QD=11.16;ReadPosRankSum=-2.606;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:116,50:0.30:166
chr12	11174219	rs79407997	C	A	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-4.915;QD=10.67;ReadPosRankSum=-2.352;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:129,56:0.30:185
chr12	11174223	rs74363809	G	C	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.323;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=3.814;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-5.075;QD=9.72;ReadPosRankSum=-1.413;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:143,58:0.29:201
chr12	11174261	rs75441696	C	G	3523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.478;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.975;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-6.039;QD=10.36;ReadPosRankSum=0.675;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:238,102:0.30:340
chr12	11174264	rs77074409	C	A	3685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=2.535;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-6.071;QD=10.44;ReadPosRankSum=1.133;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:248,105:0.30:353
chr12	11174271	rs79475879	T	C	4071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=3.601;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-6.151;QD=10.31;ReadPosRankSum=2.135;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:280,115:0.29:395
chr12	11174276	rs10772420	G	A	13436.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr12	11174277	.	T	C	4497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.504;ClippingRankSum=0.000;DP=421;ExcessHet=3.0103;FS=4.507;MLEAC=1;MLEAF=0.500;MQ=59.78;MQRankSum=-5.937;QD=10.73;ReadPosRankSum=1.554;SOR=1.018;set=HC	GT:AD:AF:DP	0/1:291,128:0.31:419
chr12	11174282	rs74386164	T	C	4600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=3.597;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-5.595;QD=10.50;ReadPosRankSum=2.253;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:307,131:0.30:438
chr12	11174286	rs77837442	C	A	4626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=4.594;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-5.637;QD=10.06;ReadPosRankSum=2.549;SOR=1.054;set=HC	GT:AD:AF:DP	0/1:324,136:0.30:460
chr12	11174302	rs72475480	A	G	3680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.507;QD=6.60;ReadPosRankSum=0.528;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:372,186:0.33:558
chr12	11174327	rs72475481	C	T	4272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-4.951;QD=7.29;ReadPosRankSum=-0.519;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:370,216:0.37:586
chr12	11174372	rs74772077	C	G	5718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=452;ExcessHet=3.0103;FS=1.821;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-5.891;QD=12.74;ReadPosRankSum=0.895;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:286,163:0.36:449
chr12	11174380	rs76970958	C	T	5510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=3.346;MLEAC=1;MLEAF=0.500;MQ=59.26;MQRankSum=-6.071;QD=13.31;ReadPosRankSum=1.690;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:264,150:0.36:414
chr12	11174390	rs74992161	G	A	5060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=3.463;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-6.129;QD=13.46;ReadPosRankSum=1.608;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:241,135:0.36:376
chr12	11174397	rs76455106	T	A	4336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=5.221;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-5.815;QD=12.79;ReadPosRankSum=2.232;SOR=0.971;set=HC	GT:AD:AF:DP	0/1:222,117:0.35:339
chr12	11174416	rs112900131	A	G	1798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-5.657;QD=6.69;ReadPosRankSum=0.246;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:172,97:0.36:269
chr12	11174466	rs199592952	GA	AC	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.394;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=12.683;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-8.989;QD=6.87;ReadPosRankSum=-1.055;SOR=1.949;set=HC	GT:AD:AF:DP	0/1:98,30:0.23:128
chr12	11174476	rs200081075	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=16.860;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-10.585;QD=4.39;ReadPosRankSum=1.087;SOR=2.658;set=HC	GT:AD:AF:DP	0/1:102,19:0.16:121
chr12	11174478	.	C	A	450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=24.105;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-10.665;QD=3.66;ReadPosRankSum=1.478;SOR=3.319;set=HC	GT:AD:AF:DP	0/1:105,18:0.15:123
chr12	11174492	rs200715232	C	G	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=41.806;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-10.474;QD=2.22;ReadPosRankSum=-0.207;SOR=5.629;set=HC	GT:AD:AF:DP	0/1:95,16:0.14:111
chr12	11174753	rs1868769	G	A	5807.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	11175073	.	A	T	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.438;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-11.193;QD=0.27;ReadPosRankSum=2.298;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:167,14:0.08:181
chr12	11175083	.	C	T	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-10.240;QD=0.22;ReadPosRankSum=2.852;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:170,14:0.08:184
chr12	11175087	rs12313469	G	A	5956.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	11182989	rs11522329	T	C	7986.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.035;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=2.613;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-21.706;QD=12.50;ReadPosRankSum=2.388;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:416,223:0.35:639
chr12	11182998	rs200315131	CA	TC	7903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=3.421;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-21.966;QD=12.12;ReadPosRankSum=4.495;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:432,220:0.34:652
chr12	11183035	rs78820764	C	T	6967.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:402,205:0.34:607
chr12	11183046	rs201730548	C	T	6564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.254;ClippingRankSum=0.000;DB;DP=583;ExcessHet=3.0103;FS=4.453;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-21.772;QD=11.32;ReadPosRankSum=0.898;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:397,183:0.32:580
chr12	11183052	rs199894662	G	A	5962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.237;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=5.586;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-19.985;QD=10.69;ReadPosRankSum=0.962;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:393,165:0.30:558
chr12	11183066	rs138895028	A	T	4755.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:398,143:0.26:541
chr12	11183107	.	T	C	984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.022;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=34.135;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=-8.767;QD=2.25;ReadPosRankSum=-3.008;SOR=3.431;set=HC	GT:AD:AF:DP	0/1:381,57:0.13:438
chr12	11183108	rs12318612	G	C	8856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.327;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=34.045;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=8.835;QD=20.41;ReadPosRankSum=2.908;SOR=0.028;set=HC	GT:AD:AF:DP	0/1:55,379:0.87:434
chr12	11183114	.	AT	GC	773.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.239;ClippingRankSum=0.000;DP=440;ExcessHet=3.0103;FS=37.580;JOINED;MLEAC=1;MLEAF=0.500;MQ=53.71;MQRankSum=-9.020;QD=1.76;ReadPosRankSum=-2.138;SOR=4.644;set=HC	GT:AD:AF:DP	0/1:394,46:0.10:440
chr12	11183121	.	G	A	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.698;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=37.993;MLEAC=1;MLEAF=0.500;MQ=53.82;MQRankSum=-9.313;QD=0.71;ReadPosRankSum=-0.567;SOR=6.921;set=HC	GT:AD:AF:DP	0/1:397,34:0.08:431
chr12	11183123	rs201103714	T	C	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.016;ClippingRankSum=0.000;DB;DP=436;ExcessHet=3.0103;FS=37.993;MLEAC=1;MLEAF=0.500;MQ=53.85;MQRankSum=-9.335;QD=0.37;ReadPosRankSum=-0.940;SOR=6.914;set=HC	GT:AD:AF:DP	0/1:402,34:0.08:436
chr12	11183217	rs10772423	C	T	7749.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr12	11183255	rs10845293	G	A	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	11183286	rs10845294	G	C	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	11183451	rs10743938	A	T	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	11183506	rs115707514	T	A	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.199;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=34.390;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-15.598;QD=0.60;ReadPosRankSum=-0.134;SOR=3.145;set=HC	GT:AD:AF:DP	0/1:224,21:0.09:245
chr12	11183524	rs75159539	T	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=21.750;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-13.895;QD=1.37;ReadPosRankSum=0.049;SOR=1.779;set=HC	GT:AD:AF:DP	0/1:217,31:0.12:248
chr12	11183541	rs78152338	T	C	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=20.397;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-12.103;QD=2.40;ReadPosRankSum=1.093;SOR=1.534;set=HC	GT:AD:AF:DP	0/1:203,40:0.16:243
chr12	11183576	rs72475488	T	C	969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=15.702;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-8.917;QD=4.11;ReadPosRankSum=0.728;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:173,63:0.27:236
chr12	11183642	rs73049067	A	G	2892.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:264,153:0.37:417
chr12	11183676	rs73049072	C	T	2855.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:269,151:0.36:420
chr12	11183697	rs73049074	C	A	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:242,131:0.35:373
chr12	11183722	rs78562467	A	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:213,101:0.32:314
chr12	11183752	rs72475489	T	C	887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.683;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-7.868;QD=4.00;ReadPosRankSum=-0.409;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:167,55:0.25:222
chr12	11183793	.	G	C	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.976;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=20.652;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-10.489;QD=1.21;ReadPosRankSum=0.292;SOR=3.390;set=HC	GT:AD:AF:DP	0/1:118,14:0.11:132
chr12	11183797	.	C	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=25.312;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-11.072;QD=0.59;ReadPosRankSum=1.024;SOR=4.527;set=HC	GT:AD:AF:DP	0/1:113,11:0.09:124
chr12	11183809	.	A	G	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=25.993;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-10.890;QD=0.89;ReadPosRankSum=-0.642;SOR=4.654;set=HC	GT:AD:AF:DP	0/1:109,11:0.09:120
chr12	11183832	rs10845295	G	A	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	11199734	rs2597984	T	C	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	11201689	rs2597986	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	11201846	rs199838132	A	C	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=3.294;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-7.616;QD=9.09;ReadPosRankSum=2.184;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:107,42:0.28:149
chr12	11201850	.	TATC	T	1313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DP=147;ExcessHet=3.0103;FS=4.432;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-7.679;QD=8.94;ReadPosRankSum=2.514;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:106,41:0.28:147
chr12	11201865	.	AATG	AG,A	976.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DP=122;set=Intersection	GT:AF:DP	0/1:0.26:120
chr12	11201868	.	G	C	985.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-7.072;QD=8.50;ReadPosRankSum=3.772;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr12	11201872	.	AG	A	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.886;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-7.101;QD=0.97;ReadPosRankSum=2.642;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:85,24:0.22:109
chr12	11201877	.	G	A	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=3.103;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-4.624;QD=2.38;ReadPosRankSum=1.507;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:76,25:0.25:101
chr12	11201889	rs72475501	C	G	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:53,30:0.36:83
chr12	11201928	rs74318546	C	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-5.073;QD=4.48;ReadPosRankSum=-1.785;SOR=0.110;set=HC	GT:AD:AF:DP	0/1:26,7:0.21:33
chr12	11201933	rs79649094	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=7.179;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-4.340;QD=3.28;ReadPosRankSum=-0.724;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:24,4:0.14:28
chr12	11201934	rs75574044	G	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.776;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=8.403;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-4.252;QD=2.51;ReadPosRankSum=-0.890;SOR=0.036;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr12	11201962	rs2597987	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	11214066	.	T	C	4485.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0.000;DP=733;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-26.245;QD=6.14;ReadPosRankSum=-1.456;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:587,143:0.20:730
chr12	11214074	rs200528237	T	C	4871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.669;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-26.263;QD=6.66;ReadPosRankSum=-0.209;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:578,153:0.21:731
chr12	11214080	.	G	A	4925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.479;ClippingRankSum=0.000;DP=740;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.42;MQRankSum=-26.373;QD=6.68;ReadPosRankSum=0.965;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:578,159:0.22:737
chr12	11214082	.	T	C	4958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;ClippingRankSum=0.000;DP=738;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-26.334;QD=6.75;ReadPosRankSum=1.314;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:575,160:0.22:735
chr12	11214091	.	G	C	5178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.689;ClippingRankSum=0.000;DP=728;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-26.331;QD=7.13;ReadPosRankSum=2.055;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:561,165:0.23:726
chr12	11214101	.	C	G	5088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.988;ClippingRankSum=0.000;DP=729;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-26.355;QD=7.00;ReadPosRankSum=3.903;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:564,163:0.22:727
chr12	11214133	rs76020872	C	T	4171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=0.629;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-24.105;QD=6.83;ReadPosRankSum=1.944;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:474,137:0.22:611
chr12	11214137	rs76147157	C	T	4081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.821;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-23.865;QD=6.81;ReadPosRankSum=1.578;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:467,132:0.22:599
chr12	11214153	.	C	T	3810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.969;ClippingRankSum=0.000;DP=498;ExcessHet=3.0103;FS=2.195;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-21.651;QD=7.68;ReadPosRankSum=-2.097;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:388,108:0.22:496
chr12	11214156	.	G	T	3266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DP=471;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-21.028;QD=6.97;ReadPosRankSum=-3.238;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:365,104:0.22:469
chr12	11214161	.	TG	CA	2819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;ClippingRankSum=0.000;DP=446;ExcessHet=3.0103;FS=2.311;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-20.884;QD=6.35;ReadPosRankSum=-2.133;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:357,87:0.20:444
chr12	11214167	.	G	C	2487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610;ClippingRankSum=0.000;DP=413;ExcessHet=3.0103;FS=1.407;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-20.115;QD=6.04;ReadPosRankSum=-3.583;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:331,81:0.20:412
chr12	11214191	rs370059980	G	A	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.046;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=27.526;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-17.292;QD=3.33;ReadPosRankSum=-3.920;SOR=2.419;set=HC	GT:AD:AF:DP	0/1:262,40:0.13:302
chr12	11214199	rs200812670	G	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=35.070;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-16.578;QD=1.92;ReadPosRankSum=-3.262;SOR=3.267;set=HC	GT:AD:AF:DP	0/1:247,30:0.11:277
chr12	11214212	rs2708380	A	T	5914.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:18,236:0.93:254
chr12	11214299	rs376020270	T	C	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.677;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=5.735;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-18.373;QD=1.38;ReadPosRankSum=-3.609;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:350,44:0.11:394
chr12	11214324	.	C	T	1989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.866;ClippingRankSum=0.000;DP=427;ExcessHet=3.0103;FS=8.993;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-17.838;QD=4.66;ReadPosRankSum=-3.919;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:355,72:0.17:427
chr12	11214326	.	G	C	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DP=432;ExcessHet=3.0103;FS=12.401;MLEAC=1;MLEAF=0.500;MQ=58.25;MQRankSum=-17.942;QD=4.84;ReadPosRankSum=-3.219;SOR=1.687;set=HC	GT:AD:AF:DP	0/1:360,72:0.17:432
chr12	11214330	.	G	A	2409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;ClippingRankSum=0.000;DP=450;ExcessHet=3.0103;FS=8.622;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-18.562;QD=5.36;ReadPosRankSum=-2.956;SOR=1.468;set=HC	GT:AD:AF:DP	0/1:370,80:0.18:450
chr12	11214336	rs371367179	A	T	2470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=8.366;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-19.261;QD=5.48;ReadPosRankSum=-2.403;SOR=1.361;set=HC	GT:AD:AF:DP	0/1:365,86:0.19:451
chr12	11214351	.	G	C	3592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=482;ExcessHet=3.0103;FS=7.439;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-20.216;QD=7.45;ReadPosRankSum=-0.996;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:370,112:0.23:482
chr12	11214360	rs73260771	C	A,T	13481.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=475;set=Intersection	GT:AF:DP	1/2:0.25,0.75:475
chr12	11214363	.	T	C	4025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DP=477;ExcessHet=3.0103;FS=7.140;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-19.907;QD=8.44;ReadPosRankSum=1.248;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:357,120:0.25:477
chr12	11214368	.	T	C	4427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118;ClippingRankSum=0.000;DP=492;ExcessHet=3.0103;FS=4.742;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-19.650;QD=9.00;ReadPosRankSum=1.174;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:360,132:0.27:492
chr12	11214386	rs200171449	T	G	4571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.944;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=2.748;MLEAC=1;MLEAF=0.500;MQ=57.32;MQRankSum=-19.352;QD=9.56;ReadPosRankSum=4.130;SOR=0.780;set=HC	GT:AD:AF:DP	0/1:343,135:0.28:478
chr12	11214392	rs200937291	G	A	4484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.948;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=1.972;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-19.218;QD=9.48;ReadPosRankSum=5.441;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:341,132:0.28:473
chr12	11214437	rs72477410	T	C	3857.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:302,133:0.31:435
chr12	11214455	rs72477411	T	C	2997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=7.597;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-16.684;QD=7.51;ReadPosRankSum=-0.380;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:293,106:0.27:399
chr12	11214472	rs200936852	A	G	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=14.972;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-16.637;QD=5.69;ReadPosRankSum=-1.846;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:284,82:0.22:366
chr12	11214495	.	T	C	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.430;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=57.392;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-15.614;QD=4.14;ReadPosRankSum=-2.282;SOR=3.740;set=HC	GT:AD:AF:DP	0/1:253,44:0.15:297
chr12	11214498	.	T	C	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.139;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=61.471;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-15.218;QD=3.18;ReadPosRankSum=-1.580;SOR=4.329;set=HC	GT:AD:AF:DP	0/1:251,38:0.13:289
chr12	11214500	.	T	C	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.798;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=62.837;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-14.896;QD=2.81;ReadPosRankSum=-1.028;SOR=4.678;set=HC	GT:AD:AF:DP	0/1:250,34:0.12:284
chr12	11214509	.	CA	TG	337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.249;ClippingRankSum=0.000;DP=264;ExcessHet=3.0103;FS=50.833;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-14.713;QD=1.28;ReadPosRankSum=-0.636;SOR=4.843;set=HC	GT:AD:AF:DP	0/1:239,25:0.09:264
chr12	11244001	rs201196515	T	C	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.16;QD=52.12;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	11244008	rs200479139	AT	GC	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.30;QD=48.43;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	11244015	rs200533679	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.38;QD=45.76;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	11244017	rs201618803	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.54;QD=45.73;SOR=4.892;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	11244027	rs202101405	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.52;QD=47.53;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	11244036	rs200291442	T	G	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.85;QD=40.83;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	11244067	.	A	ATT	1987.73	.	AC=2;AF=1.00;AN=2;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.58;QD=44.17;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	11244070	.	TCC	T	2012.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.91;QD=43.76;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	11244091	rs199768488	C	T	2221.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.13;QD=46.29;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	11244096	.	T	C	2311.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=44.46;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	11244097	.	G	A	2311.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=44.46;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	11244102	rs199943442	G	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.44;QD=44.46;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	11244126	rs113410031	G	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.76;QD=26.28;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	11244149	rs73064964	G	A	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.62;QD=26.97;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	11244169	rs201144595	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	11244190	rs202034865	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	11244225	rs200919222	A	G	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.70;QD=36.98;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	11244234	rs78179946	T	C	152.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.36;QD=38.01;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	11244243	rs200974913	T	G	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.53;QD=31.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	11244321	rs200838689	T	G	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.69;QD=41.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	11244323	rs201365712	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.69;QD=41.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	11244356	rs200257456	A	T	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.68;QD=23.53;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	11244369	.	GC	AT	1649.77	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=48.71;QD=51.56;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	11244378	rs201455884	C	G	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.15;QD=37.68;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	11244390	rs73064966	T	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.39;QD=24.23;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	11244432	rs111982292	A	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.56;QD=43.65;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	11244435	rs111525185	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.56;QD=43.65;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	11244470	rs201460452	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.14;QD=24.20;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	11244483	rs201210705	A	G	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.52;QD=22.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	11244591	rs73064968	C	A	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	11244603	rs200999522	T	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	11244634	rs200893955	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	11244646	rs201583586	T	C	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	11244687	rs113197337	G	C	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.84;QD=27.39;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	11244721	rs201281372	G	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=44.09;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	11244723	rs191086711	A	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.86;QD=44.09;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	11244730	rs199862459	AA	GG	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=41.49;QD=47.38;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	11244744	rs201819808	GT	AC	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=39.82;QD=46.20;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	11244793	rs368569282	C	T	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.80;QD=45.60;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	11244797	rs199777806	C	A	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.83;QD=44.57;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	11244805	.	A	T	2940.77	.	AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.17;QD=44.56;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	11244814	rs377076131	T	C	2940.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.17;QD=44.56;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	11244846	.	A	G	2626.77	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.58;QD=44.52;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	11244849	.	T	A	2626.77	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.58;QD=44.52;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	11244855	.	T	A	2626.77	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.58;QD=44.52;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	11244871	.	G	A	2594.77	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.58;QD=43.98;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	11244878	rs369719862	A	G	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.58;QD=43.98;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	11244918	.	A	AG	792.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.83;QD=41.72;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	11244921	rs112869592	G	T	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.22;QD=45.28;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	11244926	.	C	G	646.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.32;QD=58.80;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	11244930	.	T	G	466.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.32;QD=42.43;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	11244936	.	T	TTG	322.75	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.17;QD=80.69;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	11244938	.	ACG	A	143	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.28;QD=47.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	11244944	.	AG	A	98.25	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.03;QD=49.12;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	11285754	rs2600357	G	A	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	11285802	rs2600356	G	T	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	11286088	rs2599404	A	C	13557.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr12	11286249	rs77777159	T	C	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.831;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=7.094;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-13.272;QD=0.85;ReadPosRankSum=3.206;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:403,58:0.13:461
chr12	11286274	.	C	T	1444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.858;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=6.919;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-15.090;QD=2.72;ReadPosRankSum=2.615;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:463,69:0.13:532
chr12	11286276	.	G	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=6.919;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-15.198;QD=2.66;ReadPosRankSum=2.203;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:470,69:0.13:539
chr12	11286280	.	G	A	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DP=547;ExcessHet=3.0103;FS=6.867;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-15.290;QD=2.55;ReadPosRankSum=1.074;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:478,69:0.13:547
chr12	11286282	.	G	A	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DP=544;ExcessHet=3.0103;FS=6.919;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-15.275;QD=2.57;ReadPosRankSum=0.318;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:475,69:0.13:544
chr12	11286289	.	A	T	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=543;ExcessHet=3.0103;FS=5.458;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-15.259;QD=2.64;ReadPosRankSum=-2.133;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:474,69:0.13:543
chr12	11286736	rs112605675	G	C	956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.713;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=3.198;MLEAC=1;MLEAF=0.500;MQ=55.49;MQRankSum=-10.155;QD=4.27;ReadPosRankSum=0.656;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:187,37:0.17:224
chr12	11286745	.	AA	GG	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591;ClippingRankSum=0.000;DP=223;ExcessHet=3.0103;FS=1.370;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=-9.747;QD=5.09;ReadPosRankSum=0.824;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:181,41:0.18:222
chr12	11286760	.	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.625;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-8.433;QD=1.92;ReadPosRankSum=1.027;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:172,44:0.20:216
chr12	11286790	rs2600355	A	C	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.52;MQRankSum=6.154;QD=18.24;ReadPosRankSum=-1.210;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:43,148:0.77:191
chr12	11286797	.	A	G	1234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.914;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=50.93;MQRankSum=-5.624;QD=6.36;ReadPosRankSum=1.778;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:152,42:0.22:194
chr12	11286807	rs113282241	T	C	1264.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=50.43;MQRankSum=-5.145;QD=6.76;ReadPosRankSum=1.068;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:146,41:0.22:187
chr12	11286820	rs111958076	A	T	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=50.32;MQRankSum=-3.862;QD=2.16;ReadPosRankSum=1.540;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:139,34:0.20:173
chr12	11338514	rs199861447	GAA	G	705.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.21;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	11338539	rs1650016	C	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.819;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	11338555	rs1669409	A	T	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	11338613	rs1650017	CA	GG	6065.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	11338781	rs1669413	C	A	3355.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.996;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.148;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.22;ReadPosRankSum=1.508;SOR=0.349;set=HC	GT:AD:AF:DP	1/1:1,127:0.99:128
chr12	11338957	rs5020531	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	11338983	rs1650019	T	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	11339020	rs35969491	T	A	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	11418954	rs1896551	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	11421093	rs61463237	T	TGGG	4667.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	11461292	rs1052808	C	G	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	11461706	rs12308381	G	T	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=8.093;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-4.484;QD=1.55;ReadPosRankSum=-1.516;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:120,30:0.20:150
chr12	11461802	rs12829245	G	A	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr12	11461836	rs6488386	T	C	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	11462275	rs1834857	A	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	11506211	rs76504934	A	C	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	11506749	.	T	C	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=16.809;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-8.951;QD=4.34;ReadPosRankSum=-4.989;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:132,41:0.24:173
chr12	11506774	rs202083397	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=8.824;MLEAC=1;MLEAF=0.500;MQ=57.34;MQRankSum=-5.714;QD=0.40;ReadPosRankSum=-3.836;SOR=1.324;set=HC	GT:AD:AF:DP	0/1:158,12:0.07:170
chr12	11506893	rs10845341	C	T	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=26.98;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	11546742	rs201044388	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.710;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.627;MLEAC=1;MLEAF=0.500;MQ=54.65;MQRankSum=-4.526;QD=2.15;ReadPosRankSum=2.275;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr12	11546749	.	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.613;MLEAC=1;MLEAF=0.500;MQ=55.35;MQRankSum=-4.167;QD=0.66;ReadPosRankSum=-0.634;SOR=0.931;set=HC	GT:AD:AF:DP	0/1:114,12:0.10:126
chr12	11546764	rs201994479	G	T	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=7.735;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-4.439;QD=0.68;ReadPosRankSum=-0.243;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:103,9:0.08:112
chr12	11803220	rs2856305	A	C	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	11903726	rs199664048	CTTTTTTTTTTTTTTT	C	1639.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	11904752	rs2856338	T	C	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.92;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	11904767	rs10845410	C	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.19;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	11904770	rs2724599	A	T	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	12006544	rs17210957	G	A	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	12044393	rs71435871	T	TTA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=22.97;ReadPosRankSum=-0.812;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr12	12044534	rs372555234	GA	G	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.337;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:68,21:0.24:89
chr12	12230938	rs1641721	C	G	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	12240199	rs879732	C	T	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	12247594	rs11054682	A	G	3844.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	12247616	rs11054683	T	C	4199.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	12247921	.	ATT	A,AT	790.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.193;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.664;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.451;QD=13.63;ReadPosRankSum=-0.148;SOR=1.225;set=HC	GT:AD:AF:DP	1/2:7,23,28:0.40,0.48:58
chr12	12265118	rs55833207	CA	C	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.42;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	12278468	rs2302684	A	T	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	12301898	rs2302685	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	12397668	rs10219768	T	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	12397668	.	TTA	ATT	669	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=4;NR=25;PP=669;QD=24.9126853401;SC=TCAAATCGGTTTAAGTGAGCA;SbPval=0.57;Source=Platypus;TC=29;TCF=4;TCR=25;TR=29;WE=12397678;WS=12397658;set=Platypus	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	12397670	rs10219748	A	T	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	12482876	rs113872597	CCTG	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	12483927	rs4763818	G	A	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	12496086	rs3741798	C	T	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	12618715	rs967648	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	12630669	rs3809199	C	T	2767.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	12814818	rs4763862	C	T	2737.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	12878765	rs66561220	T	C	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	12879057	rs34323	G	A	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.09;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	12879254	rs7956514	T	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	12966967	rs7978823	A	G	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	12982210	rs58862672	T	C	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	13028653	rs10845659	A	G	3112.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	13102576	rs149059133	G	A	8378.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	13211212	rs6488582	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	13214537	rs3741818	A	G	1851.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	13215685	rs2200498	C	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	13221606	rs1386005	T	C	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr12	13228781	.	G	C	413.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr12	13294280	rs7978768	C	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	13369196	rs8885	C	T	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	13529068	rs4763975	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	13529401	rs7957232	T	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	13717508	rs1806201	G	A	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	13720272	rs4764010	A	G	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	13768354	rs1468845	C	T	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	13769664	rs1805199	T	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	14587301	rs3213764	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	14590981	rs10734876	T	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	14599904	rs5796595	C	CT	323.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-0.314;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr12	14628705	rs7298275	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	14628773	rs7313259	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr12	14634392	rs140044044	C	CAGTT	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	14664595	rs10846013	A	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	14688644	rs7957558	C	T	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	14689451	rs1345531	T	C	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	14694993	rs1862014	G	C	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	14720366	rs10846023	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	14720554	rs147342083	GGCA	G	6174.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	14720583	rs7954623	T	C	3715.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	14769468	rs1558795	G	A	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	14774849	rs7302418	T	A	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	14781503	rs4764105	A	T	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	14794062	rs10772800	G	A	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	14804994	rs7313027	G	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	14822855	rs7314345	G	A	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	14827463	rs3217157	AATC	A	12104.73	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr12	14829893	rs1420635	A	C	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	14834421	rs56944147	GA	G	9799.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.85;QD=43.94;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	14834426	.	AG	TG	2969	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=69.41;NF=21,97;NR=99,101;PP=2969,2965;QD=20;SC=AATAGGAAAAAGAGAAACTAA;SbPval=0.47;Source=Platypus;TC=124;TCF=21;TCR=103;TR=120,198;WE=14834434;WS=14834416;set=Platypus	GT:AD:AF:DP	0/1:5,198:0.98:203
chr12	14834426	.	AG	A	2969	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=69.41;NF=21,97;NR=99,101;PP=2969,2965;QD=20;SC=AATAGGAAAAAGAGAAACTAA;SbPval=0.47;Source=Platypus;TC=124;TCF=21;TCR=103;TR=120,198;WE=14834434;WS=14834416;set=Platypus	GT:AD:AF:DP	0/1:4,120:0.97:124
chr12	14834427	rs58911033	G	T	9807.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=69.25;QD=43.98;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	14923522	rs12818627	T	C	198.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	14924028	rs16910259	A	G	12262.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr12	14928195	rs66661591	T	C	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	14975721	rs11610238	C	T	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	14976553	rs17761825	G	C	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	14993439	rs11276	C	T	2224.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	14993608	rs3088189	G	A	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	14993854	rs1861698	A	G	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	15034996	rs2430735	T	A	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	15035081	rs4236	T	C	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	15037187	rs11393307	T	TA	200.80	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	15038788	rs1800801	C	T	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	15081897	rs2445371	AG	CA	8904.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	15082004	rs11056244	T	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	15090762	rs3748296	G	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	15090837	rs3748297	A	G	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	15091221	rs11432737	A	AT	4857.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	15095707	rs10772822	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	15100684	rs7979291	C	T	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	15101034	rs71926892	G	GCGCGCACA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=34;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=65.78;MQRankSum=0.674;QD=12.84;ReadPosRankSum=0.100;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:5,9:0.64:14
chr12	15101036	rs10846090	A	G	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.088;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.12;MQRankSum=-1.235;QD=10.32;ReadPosRankSum=-0.123;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,5:0.33:15
chr12	15101072	rs4764142	T	G	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	15103605	rs2430711	A	G	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	15131995	rs2233623	C	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	15273932	rs2247574	C	T	3522.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.435;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-0.733;SOR=0.400;set=HC	GT:AD:AF:DP	1/1:1,135:0.99:136
chr12	15273957	rs2247568	A	G	4940.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	15652330	rs4764197	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	15656832	rs4764199	T	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	15677992	rs960666	A	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	15679120	rs6488782	C	A	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	15679208	rs7134888	G	A	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	15702202	rs10541885	AAT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.379;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr12	15731724	rs5796639	T	TG	4975.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	15731744	rs1024843	C	T	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	15742313	rs34222753	GA	G	855.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.505;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.604;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.520;QD=14.50;ReadPosRankSum=0.653;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:6,53:0.90:59
chr12	15748020	rs1558787	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	15777486	rs4623959	T	C	105.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	15803992	rs4237955	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	15818880	rs4363660	T	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	15822229	rs4237957	A	C	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	15822244	rs4237958	T	C	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	15834239	rs372474846	GTAA	G	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.40;ReadPosRankSum=-0.302;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr12	16036261	rs10734889	C	G	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	16050808	rs10772879	T	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	16055926	rs71042275	G	GT	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	16185463	rs57961487	CTT	C	2131.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	16369792	rs75832139	C	T	6935.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.75;SOR=1.065;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	16369800	rs75397050	A	G	7086.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.21;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	16369828	rs1671511	A	T	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	16397677	rs1527014	G	A	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	16397746	rs1852451	C	T	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	16397758	rs74065829	G	A	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	16430284	rs1671487	G	A	7491.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr12	16743165	rs2058798	A	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	17142520	rs35949588	C	T	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	17142546	rs7955087	T	C	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	18234422	rs11043839	C	A	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	18237688	rs6486881	C	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	18238782	.	CT	C	998.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.28;ReadPosRankSum=2.272;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr12	18238788	.	T	C	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=1.042;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr12	18238804	rs112896269	GAGCCAC	G	1106.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	18473729	rs11044026	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	18491597	.	CTG	C	82	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=28;MQ=58.8;NF=0;NR=4;PP=82;QD=21.25;SC=TTGTGTGTATCTGTGTGTGTG;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=4;WE=18491606;WS=18491587;set=Platypus	GT:AD:AF:DP	1/0:4,4:0.50:8
chr12	18499777	rs10770357	C	G	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	18524010	rs78787243	A	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	18641326	rs7137852	T	C	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	18648812	rs11834118	G	A	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	18649057	rs12312266	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	18720057	rs11044189	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	18747387	rs12827507	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	18747528	rs11044211	C	T	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	18801017	rs501379	T	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	18840911	rs2306798	A	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	18848131	rs1487070	T	C	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	18849071	rs3825081	G	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.71;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	18889547	rs10841080	C	A	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	18889565	rs12306752	A	T	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	18890472	rs5796766	GT	G	1522.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	18891079	rs1075421	T	C	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	19282670	rs28512290	C	T	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	19283135	rs61913270	C	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	19406863	rs6486942	C	T	2528.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	19418588	rs6486945	G	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	19418874	rs7316780	C	T	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	19428009	rs2279537	T	A	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	19512563	rs11044515	G	A	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	19522484	rs113006194	A	AAAAG	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	19671152	.	CTT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.27;ReadPosRankSum=1.268;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr12	19873411	rs4301848	G	T	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	19873497	rs4369485	A	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	20522124	rs140759925	CGT	C	57.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr12	20709733	rs4762972	G	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	20766559	rs10743380	C	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	20766685	rs7308381	G	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	20769026	rs68125264	TTAGA	T	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	20774464	rs10743381	A	G	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	20774539	rs10734705	A	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	20786787	rs4265636	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	20786807	rs3858661	T	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	20786822	rs10841580	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	20786841	rs10743382	T	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	20786880	rs10841581	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	20801855	rs9284155	C	T	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.25;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	20801861	rs71039963	C	CT	81.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.326;SOR=2.670;set=HC	GT:AD:AF:DP	0/1:2,10:0.83:12
chr12	20803323	rs9804769	A	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	20803549	rs10743384	T	C	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	20893052	rs2037154	C	A	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr12	20893108	rs2271656	C	T	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	20893354	rs12368368	G	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	20903757	rs10841611	T	C	7931.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	20903865	rs10841612	G	A	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	20905250	rs6487138	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	20968644	.	AATATTCACTTGGTATCTG	A	1353.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	20968665	rs4149158	GTTTA	G	1405.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	20968828	rs10734710	C	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	21011480	rs4149117	T	G	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	21013948	rs3764009	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	21014139	rs3764008	C	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	21014163	rs3764007	T	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	21014178	rs7306033	A	G	322.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21015610	rs1036261	A	G	2257.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	21015760	rs7311358	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	21028208	rs60140950	G	C	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	21031020	rs2417938	A	G	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	21032242	rs4149142	T	G	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21036411	rs2053098	A	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	21051489	rs4149153	C	T	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	21054369	rs3764006	G	A	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	21054664	rs7970514	C	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	21065235	rs142241896	TTTTATTTATTTATTTA	T	936.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.58;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	21065365	rs10841706	C	A	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	21065429	rs34721125	AT	A	195.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.504;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.33;ReadPosRankSum=2.777;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr12	21168758	rs34168692	T	TA	133.75	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	21176135	rs1546308	T	C	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	21176247	rs1546307	A	G	3185.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	21196424	rs11045676	T	A	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	21200089	rs11045681	A	G	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	21207389	rs11045699	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	21317668	rs10444413	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	21317791	rs4149032	C	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	21317810	rs4149033	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	21317922	rs4149034	G	A	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	21329738	rs2306283	A	G	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	21329761	rs11045818	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	21329813	rs11045819	C	A	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	21331389	.	TTACTTG	T	61	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=0.9998;HP=3;HapScore=2;MGOF=3;MMLQ=28;MQ=62.13;NF=2;NR=0;PP=61;QD=43.0;SC=TGAATATAAATTACTTGTACT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=2;WE=21331402;WS=21331379;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr12	21331599	rs4149057	T	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	21331625	rs2291075	C	T	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	21375061	rs11045873	T	A	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.85;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	21375061	.	TTG	ATC	241	.	AC=2;AF=1.00;AN=2;BRF=0.26;FR=1.0000;HP=1;HapScore=2;MGOF=19;MMLQ=27;MQ=59.47;NF=12;NR=6;PP=241;QD=16.3593263812;SC=ATTATTATTATTGCTCAAGTG;SbPval=0.68;Source=Platypus;TC=19;TCF=12;TCR=7;TR=18;WE=21375071;WS=21375051;set=Platypus	GT:AD:AF:DP	1/1:1,18:0.95:19
chr12	21375063	rs11045874	G	C	986.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	21590621	rs2058464	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	21590788	rs2110165	C	A	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	21593404	rs4762702	G	C	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21602792	rs71537701	CTTTTTTTTTTTT	C	458.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	21605157	rs3759229	A	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21608891	rs2302500	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	21609127	rs4367993	T	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21609222	rs4388943	G	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21609684	rs55861860	A	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	21609733	rs7964140	A	G	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	21609761	rs34335650	C	CAACT	4659.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	21609907	rs7964568	G	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	21609936	rs68030467	A	G	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	21614141	rs151311552	CAATTT	C	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	21614256	rs7297084	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	21615664	rs3782660	T	C	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	21615917	rs34595378	C	CAG	2723.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	21615935	rs10841819	A	T	468.89	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.363;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-0.342;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,28:0.88:32
chr12	21621737	rs61926324	A	G	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	21623284	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=50.74;MQRankSum=-1.416;QD=1.89;ReadPosRankSum=0.366;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:32,15:0.32:47
chr12	21624308	rs56736899	TA	T	1112.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr12	21626324	rs917852	A	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.83;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	21626330	rs917853	C	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	21627672	rs35159698	C	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21628320	rs10841831	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	21628336	rs10841832	G	A	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	21628791	rs3752648	T	C	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	21628812	rs10160843	G	A	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	21629987	rs917854	T	C	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	21629993	rs5796903	A	AC	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	21639385	.	TAA	T,TA	919.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.21;MQRankSum=0.289;QD=18.77;ReadPosRankSum=0.389;SOR=0.296;set=HC	GT:AD:AF:DP	1/2:1,15,33:0.31,0.67:49
chr12	21639591	rs7964104	G	C	233.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	21659973	rs16923862	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	21661241	rs61926330	A	G	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	21661508	rs11046091	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	21679652	rs10564739	CTT	C	1899.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	21680609	rs7966780	C	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	21681819	rs2306178	A	G	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	21684029	rs3765093	G	A	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	21692166	rs36023861	CA	C	354.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	21699491	rs3765089	C	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	21711009	rs7967170	C	A	268.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	21711111	rs7977474	G	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.109;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	21711381	rs7977648	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	21711385	rs7977846	G	C	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	21712545	rs1871136	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	21712574	rs1871137	C	T	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	21712728	rs111250042	GACATTCTTTGAAATT	G	1009.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	21713308	rs4639981	T	A	7253.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr12	21713402	rs2306180	T	C	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	21727315	rs7963756	C	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	21733121	rs2126887	T	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	21757272	rs153944	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	21789968	rs1677134	G	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	21791272	rs1650289	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	21791410	rs71053332	TA	T	405.86	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:5,33:0.87:38
chr12	21791455	rs1427830	A	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=26.61;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	21791565	rs1677129	A	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	21794865	rs1626023	A	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	21796814	rs4762862	G	A	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	21797029	rs1650294	A	G	3987.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	21799999	rs1540405	G	C	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	21807432	rs1677078	T	C	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	21807640	rs1650315	G	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	21968976	rs7980030	T	G	281.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.13;ReadPosRankSum=-1.131;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr12	21970019	rs2638441	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	22005003	rs2307024	T	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	22005510	rs704183	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	22014161	rs2418018	C	A	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	22014163	rs2418019	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	22014165	rs2418020	C	A	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	22017422	rs697250	A	G	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	22017486	rs697251	C	G	1009.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	22035873	rs1356368	C	T	2518.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	22047151	rs704216	G	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	22047174	rs704217	C	T	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	22063115	rs10770865	A	G	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	22063337	rs4148656	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	22063737	rs4762719	G	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	22063749	rs4762720	T	C	2491.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	22063971	rs4148654	A	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	22065699	rs3835048	G	GA	221.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	22068849	rs3759236	G	T	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	22078245	rs2900493	G	C	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	22078556	rs2277404	T	C	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	22078571	rs2176394	T	A	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	22078838	rs2277405	T	G	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	22086976	rs6487252	A	C	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	22089348	rs4586220	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	22354921	rs704219	A	G	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	22401911	rs4762896	C	T	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	22440281	rs2287166	A	T	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	22440315	rs2072542	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	22478425	rs4762904	A	G	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	22478698	rs4762905	C	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	22612291	rs148077355	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.938;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.485;QD=2.08;ReadPosRankSum=-0.110;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:23,10:0.30:33
chr12	22624431	rs76130321	T	C	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	22676633	.	TAA	T	153.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=5.780;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=0.502;SOR=0.070;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr12	22696845	rs2271471	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	22796994	rs11429701	A	AT	3648.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	22814036	rs4963793	A	G	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	23686237	rs148266789	GTC	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.213;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:18,4:0.18:22
chr12	23689301	rs4636755	T	C	184.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	23699484	.	T	C	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.82;ReadPosRankSum=0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr12	23737326	rs11046991	C	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	23737566	rs11046992	G	A	4306.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	23737664	rs34653390	AGT	A	535.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr12	23757245	rs1479452	C	T	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	23915547	rs71059921	G	GA	670.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.519;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.36;ReadPosRankSum=-1.631;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:3,38:0.93:41
chr12	24102700	.	GTC	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.876;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=4.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.43;ReadPosRankSum=-1.200;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	24103911	rs35800209	GCA	G	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.635;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.630;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr12	24982706	rs35406045	TA	T	4058.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr12	24982721	rs7398085	A	G	4191.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.200;QD=41.50;ReadPosRankSum=0.326;SOR=0.536;set=HC	GT:AD:AF:DP	1/1:1,100:0.99:101
chr12	24982726	rs28678340	G	A	6266.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;MQRankSum=0.200;QD=41.23;ReadPosRankSum=0.292;SOR=0.536;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr12	25031449	rs6487436	A	G	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	25054891	rs2291894	G	A	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	25147300	rs699030	G	C	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	25147358	rs11047746	C	T	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	25148755	rs864161	C	G	8497.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	25242595	rs7969931	C	G	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	25242776	rs10743538	C	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	25243115	rs1908946	G	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	25249743	rs10842464	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	25249785	rs10771166	T	C	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	25254975	rs7303889	A	C	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	25257166	rs12828225	T	A	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	25257182	rs34133737	GA	G	1149.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	25261735	rs859146	G	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=26.42;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	25261759	.	T	TAAAAAAAAAAAAAAAAAA	117.27	.	AC=2;AF=1.00;AN=2;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=39.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	25263310	rs77156774	T	G	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	25272027	rs2291365	A	G	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	25274593	rs2220195	A	G	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	25297713	rs7971062	C	T	136.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	25299921	rs11047863	G	A	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	25302481	rs10842485	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	25343516	rs10842501	C	T	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	25343707	rs10842502	C	T	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	25362217	rs9266	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.51;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	25362229	rs61763588	A	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.97;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	25368462	rs4362222	C	T	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	25368593	.	AT	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.499;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr12	25388290	rs7133635	G	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	25656706	rs78120781	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	25673079	.	C	CATATAT	51.92	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	26231825	rs11048403	G	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	26231843	rs7133685	G	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	26231898	rs4963952	G	A	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	26275555	rs11048413	G	A	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	26568132	rs75530413	A	G	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	26571894	rs201165707	T	TA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.373;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.102;QD=0.67;ReadPosRankSum=-1.411;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr12	26580814	rs1818135	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	26596618	rs2220406	C	T	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	26629972	rs12319212	A	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	26636911	rs7303383	C	A	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	26709496	.	TTTTTGTGTG	TTG,T	1094.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=34;set=Intersection	GT:AF:DP	1/1:0.97:29
chr12	26777379	rs2880875	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	26809537	rs2306550	G	A	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	26816496	rs1375656	T	C	1400.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	26819095	.	A	ATAGATAGATAGATAGATAGAT	82.84	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	26834792	rs11048647	A	C	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	26834804	rs111626763	T	TACTC	4692.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	26848410	rs1982385	A	C	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	26848663	rs3830260	A	AT	1430.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	27059149	rs1488053	C	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	27059224	rs1488052	G	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	27059422	rs1488051	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	27064232	rs3210635	C	T	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	27066350	rs3736227	C	T	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	27069174	rs12809529	T	C	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	27072129	rs950158	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	27075705	rs7137176	A	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	27081298	rs34908423	A	G	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	27081566	rs2029309	C	G	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	27081873	rs2029310	G	A	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	27087703	rs708158	T	C	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	27107268	rs2129092	G	A	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	27109412	rs67397655	CAT	C	55.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.94;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr12	27109655	rs2046937	A	G	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	27461984	rs6487599	T	C	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	27470682	rs2242185	C	T	773.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	27470866	rs6487601	G	A	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	27553741	rs1037920	A	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	27553794	rs2927028	C	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	27623490	rs776199	A	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	27647420	rs201660025	TTTATTA	T	588.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	27800576	rs34792131	C	CT	1289.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr12	27800746	rs2194816	G	T	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	27813754	rs7132997	A	G	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	27813903	rs7133222	C	T	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	27813961	rs7133231	A	G	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	27813973	rs7133328	C	T	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.95;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	27813981	rs7133545	G	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	27814085	rs6487629	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	27820302	rs2033024	C	T	1286.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	27826780	rs2052673	T	G	1887.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=-0.340;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:2,82:0.98:84
chr12	27832308	rs10743607	G	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	27845924	rs3764010	C	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	27849795	rs929948	CA	TG	7080.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	27867706	rs11049106	C	T	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	27915718	rs10842975	A	T	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	27944858	rs2288232	G	A	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	28111319	rs34525777	C	CA	194.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr12	28122893	rs6246	A	G	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	28336713	rs61920228	C	T	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	28412372	rs11049488	G	A	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.74;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	28457618	rs6487674	A	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	28457802	rs10843150	A	G	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	28544464	rs3741760	G	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	28605370	rs144054230	G	GCAGT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	28605426	rs10771427	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	28636830	rs1511551	G	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	28637115	rs1511550	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	28724216	rs6487691	T	C	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	28726042	rs6487692	C	T	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	29423460	rs2216854	G	A	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	29423583	rs2194519	A	G	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	29444284	rs7972032	G	A	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	29446477	rs10679359	T	TA	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:7,54:0.89:61
chr12	29462224	rs6487807	C	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	29485449	rs10743656	G	A	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	29486745	rs1052583	T	C	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	29496224	rs3782511	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	29502236	rs3764953	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	29524365	rs3214493	TA	T	3440.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	29586810	.	C	CA	623.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.49;ReadPosRankSum=0.623;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr12	29593768	rs66808023	GA	G	1198.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	29596489	rs74911812	G	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	29604392	rs1347570	C	G	2963.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	29607931	rs2060570	T	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	29608449	rs1369904	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	29628016	rs2043623	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.66;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	29630081	rs7975356	G	A	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr12	29639186	rs3847680	T	C	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	29642542	rs967182	C	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	29642573	rs967181	A	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	29648275	rs10843438	G	A	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	29650361	rs10771544	A	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	29650702	rs822879	C	T	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	29721945	rs2254945	C	T	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	29819036	rs80264597	A	T	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.31;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	29819084	rs79437323	T	G	4491.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.52;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	29819161	.	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=1.116;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.915;QD=0.89;ReadPosRankSum=-0.377;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:53,23:0.30:76
chr12	29921074	rs302316	A	G	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	29936613	rs184221	T	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	30809492	rs7974489	G	A	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	30815157	rs2118780	A	T	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	30881488	rs11406794	C	CA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.296;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr12	30948848	rs256653	G	C	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	30949206	rs256654	A	G	4630.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	31131712	rs35097	T	C	1314.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	31132479	rs35096	A	C	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	31135478	rs35089	T	C	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	31136256	rs35088	C	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	31144884	rs35076	A	G	9343.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr12	31237026	rs28559720	A	G	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	31237372	rs3930906	A	T	947.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	31237679	.	C	A	540.77	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,25:0.46:54
chr12	31237700	rs3881296	G	A	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	31238075	rs4931428	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	31240862	rs7308754	A	T	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	31240925	rs7308773	A	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.41;QD=25.53;SOR=1.069;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	31240960	rs7309189	G	A	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	31242271	rs2005896	G	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	31242314	rs2005897	T	C	4989.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=27.72;SOR=1.080;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	31242399	rs3881298	T	C	7699.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr12	31242440	rs2075318	A	G	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	31244619	.	C	T	348	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=3;HapScore=1;MGOF=17;MMLQ=29;MQ=46.84;NF=22;NR=0;PP=348;QD=17.3986914794;SC=AGGGGAGCCCCGCCCTGCTCA;SbPval=1.0;Source=Platypus;TC=76;TCF=73;TCR=3;TR=22;WE=31244627;WS=31244609;set=Platypus	GT:AD:AF:DP	0/1:54,22:0.29:76
chr12	31244703	rs374684190	C	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-9.485;QD=0.47;ReadPosRankSum=-0.156;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:323,55:0.15:378
chr12	31244716	rs35588475	C	T	4999.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:155,238:0.61:393
chr12	31244846	rs1808348	C	G	3925.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	31244924	rs1808349	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	31245741	rs2075321	A	G	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	31246371	rs10843882	C	T	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	31246438	rs7970074	T	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.35;QD=43.02;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	31249118	rs9788128	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	31249225	rs9788047	T	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.90;QD=30.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	31249244	rs9788048	T	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.76;QD=31.15;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	31249861	rs2075322	C	G	9799.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr12	31250669	rs7971579	G	A	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.34;QD=25.90;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	31250768	rs2909388	C	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.16;QD=29.62;SOR=1.897;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	31250804	rs12366526	G	A	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.82;QD=26.71;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	31253995	rs1046456	C	T	15206.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr12	31254642	rs7952861	T	A	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	31254701	rs7966366	G	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	31254752	rs7966272	C	T	3679.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.59;QD=26.66;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	31255263	rs10771803	G	A	15629.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr12	31255772	rs58740356	A	AG	1657.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	31256075	rs3825318	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	31256546	rs1046457	G	A	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	31256905	rs1046458	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	31264743	rs4930953	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.11;QD=24.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	31264770	rs1053552	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.45;QD=25.21;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	31265823	rs2302848	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	31265872	rs2302849	C	T	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	31265925	rs2302850	C	G	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.72;QD=25.75;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	31265983	rs1053534	G	A	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.69;QD=25.60;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	31266042	rs2302853	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	31267744	rs7968684	A	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr12	31269189	rs25559	C	CATCAT	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	31270076	rs58035829	A	C	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.42;QD=40.02;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	31270080	rs59046327	G	GAAA	1251.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.70;QD=46.36;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	31270149	rs7316147	GC	CA	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=49.68;QD=42.10;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	31270171	rs7301557	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	31282765	rs2536839	A	T	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	31282784	rs35666624	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	31284251	rs28460499	A	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.72;QD=29.94;SOR=3.737;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	31285101	rs2933405	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	31285214	rs2287450	A	G	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.63;QD=26.03;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	31285991	rs3853618	A	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.21;QD=27.22;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	31286189	rs3844571	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.95;QD=27.13;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	31288884	rs4931444	G	T	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	31291163	rs78835222	G	A	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.49;QD=25.92;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	31298362	rs140043334	G	A	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:40,141:0.78:181
chr12	31359125	rs12810278	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	31359210	rs2164498	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	31539303	rs708200	G	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	31545103	rs708218	T	C	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	31545381	rs792874	A	G	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	31551350	rs1798769	C	T	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	31568221	rs793159	C	T	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	31577378	rs34764768	A	AT	2417.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:8,116:0.94:124
chr12	31586007	rs2682695	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	31814741	rs7959989	G	C	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	31815233	rs56228550	C	T	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	31825120	rs11551368	G	C	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	31826791	rs73090331	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	31850220	rs2388926	C	T	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	31908050	rs6488005	A	C	15190.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr12	32134240	rs2388982	C	T	11876.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr12	32134638	rs2166807	T	C	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	32135441	rs3759301	T	C	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	32138924	rs7302975	T	C	1944.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	32138974	rs35804480	CT	C	1567.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	32446835	rs261877	G	A	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	32446901	rs261878	T	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	32520416	rs11351681	GA	G	148.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	32530257	rs7298381	G	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	32530385	rs7298319	C	G	8519.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	32552769	rs2651369	C	G	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	32755259	rs12823621	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	32854602	rs9737752	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	32890678	rs59000311	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	32890685	rs2177704	C	T	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.50;SOR=1.656;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	32945495	rs7956824	C	T	13912.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr12	32945721	rs6488091	G	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	32945769	rs6488092	G	C	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	32955647	rs7975824	C	A	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	32974245	rs10772008	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	33535510	rs74075211	T	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	33576990	rs7980799	A	C	3121.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	38711020	rs11183276	T	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	38712142	rs6582584	C	G	15234.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,581:1.00:581
chr12	38715000	rs35518352	A	G	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	38717678	rs6582607	T	C	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	39064727	rs35326581	T	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.78;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	39087609	rs3759139	G	A	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	39087687	rs826877	A	C	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	39096518	rs7957376	A	G	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	39096664	rs7960616	T	A	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	39117384	rs844115	C	A	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	39124173	rs5797589	G	GA	1259.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	39154492	rs12300353	G	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	39233771	rs3803020	A	G	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.56;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	40037727	rs10735878	A	G	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	40077028	rs10047563	A	G	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40078099	rs141128909	AGTCCTAAC	A	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	40345185	rs11446411	G	GA	955.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.725;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.03;ReadPosRankSum=-0.558;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:3,50:0.94:53
chr12	40619082	rs2256408	G	A	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	40619301	rs2723273	G	A	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	40619542	rs2256286	A	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	40626230	rs1352879	T	C	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	40626285	rs1352878	C	T	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	40629554	rs2131088	A	T	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	40631727	rs2723270	T	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40716037	.	T	TA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.689;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.90;ReadPosRankSum=-0.598;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:78,33:0.30:111
chr12	40830599	rs112760369	CGTGT	C,CGT	2091.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.582;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;MQRankSum=0.306;QD=22.49;ReadPosRankSum=1.034;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:3,19,71:0.20,0.76:93
chr12	40831845	rs11564166	A	G	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	40834918	rs4768261	C	T	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	40835026	rs11564142	C	T	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	40837898	rs11564109	G	A	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	40840435	rs7315186	T	C	3982.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	40841781	rs1820547	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	40841832	rs17589334	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40841851	rs17529964	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	40852398	rs1035811	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40910157	rs59005564	A	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr12	40910545	rs1122863	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40912034	rs56036709	T	C	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	40912162	rs17128391	T	C	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	40912684	rs73116206	A	T	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	40912953	rs112863400	G	GA	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:7,55:0.89:62
chr12	40913928	rs17599001	T	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	40914127	rs17599042	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	40915474	rs58079549	CA	C	10440.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr12	40915480	rs56952712	G	A	10335.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	40915786	rs59767957	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	40916163	rs56211973	T	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	40916281	rs55642775	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	40917312	rs2920820	C	T	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	40917416	rs11829565	T	C	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	40917532	rs79341017	TAA	T	1940.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	40917664	rs73119908	T	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	40919119	rs56226314	T	C	7944.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr12	40919535	rs73119922	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40920110	rs2933351	T	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	40920169	rs7302287	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	40920332	rs61382395	A	G	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	40920872	rs111826232	CT	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.778;QD=8.34;ReadPosRankSum=1.453;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:10,30:0.75:40
chr12	40921902	rs4768287	C	T	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr12	40922091	rs4768288	A	G	6486.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr12	40922104	rs1444220	A	C	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	40923073	rs73119944	G	T	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	40924179	rs73106607	C	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	40924470	rs2588403	T	C	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	40925108	rs4768289	A	C	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,71:0.97:73
chr12	40925691	rs17128416	C	T	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	40925908	rs7139187	A	C	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	40926203	rs11835376	T	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	40926260	rs17599204	C	T	240.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	40926278	rs11837057	G	A	184.90	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	40926454	rs10506166	T	C	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	40927890	rs7977973	T	G	756.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.838;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.23;ReadPosRankSum=-0.669;SOR=0.314;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr12	40928476	rs113966690	T	TTCC	952.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.49;QD=43.31;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	40929425	rs113734402	TA	T	198.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	40929482	.	G	GT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.310;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr12	40930284	rs1873674	C	G	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	40930709	rs7971316	G	C	7249.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	40935231	rs11177133	C	G	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	40935517	rs56083241	G	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	40936512	rs17599666	C	A	7662.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr12	40940392	rs7959536	C	T	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	40942463	rs35702138	GT	G	1621.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.293;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.164;QD=9.65;ReadPosRankSum=0.355;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:40,128:0.76:168
chr12	40952934	rs1352938	A	G	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	40964206	rs7979493	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	41582590	rs10879830	G	C	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.45;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	41582603	rs10879831	G	C	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	41588124	rs3847980	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	41946315	rs11301675	TA	T	46	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	41946453	rs285585	T	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	41949370	rs285580	T	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	41957568	rs157971	C	T	768.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	41961535	rs12310084	A	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	41966306	rs12298745	G	A	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	42481803	rs824722	G	A	234.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	42499690	rs79044728	T	C	2996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=6.501;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-15.494;QD=6.40;ReadPosRankSum=3.200;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:369,99:0.21:468
chr12	42499692	rs77044712	A	T	2969.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=6.501;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-15.494;QD=6.32;ReadPosRankSum=4.110;SOR=1.253;set=HC	GT:AD:AF:DP	0/1:371,99:0.21:470
chr12	42499694	.	A	T	3107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DP=487;ExcessHet=3.0103;FS=6.686;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-15.700;QD=6.49;ReadPosRankSum=5.266;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:380,99:0.21:479
chr12	42499701	rs74583427	C	A	3068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.985;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=5.188;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-15.462;QD=6.31;ReadPosRankSum=6.881;SOR=1.142;set=HC	GT:AD:AF:DP	0/1:384,102:0.21:486
chr12	42499711	rs76555438	C	A	3233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=4.098;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-15.288;QD=6.63;ReadPosRankSum=8.417;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:383,105:0.22:488
chr12	42499714	rs78536827	T	C	3281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=4.089;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-15.321;QD=6.63;ReadPosRankSum=8.383;SOR=1.025;set=HC	GT:AD:AF:DP	0/1:389,106:0.21:495
chr12	42499730	rs77940338	G	T	3551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-14.472;QD=7.67;ReadPosRankSum=5.600;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:354,109:0.24:463
chr12	42499738	.	TC	CT	3636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.966;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=3.826;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-14.032;QD=8.03;ReadPosRankSum=2.683;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:341,112:0.25:453
chr12	42499763	rs80202058	T	C	3559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.906;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-12.008;QD=8.75;ReadPosRankSum=-1.947;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:298,109:0.27:407
chr12	42503504	rs201103553	T	TA	1389.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	42503505	rs824695	T	A	1680.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.61;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	42538320	rs112525075	G	A	1089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.712;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-3.170;QD=11.98;ReadPosRankSum=-1.477;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr12	42538334	rs181558534	C	A	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=7.321;MLEAC=1;MLEAF=0.500;MQ=58.30;MQRankSum=-3.170;QD=12.01;ReadPosRankSum=-1.760;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:60,31:0.34:91
chr12	42538340	.	C	A	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=5.752;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-3.128;QD=12.42;ReadPosRankSum=-2.248;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:57,31:0.35:88
chr12	42538349	.	T	C	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=13.109;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-3.539;QD=11.45;ReadPosRankSum=0.276;SOR=1.905;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr12	42538352	.	C	A	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=13.109;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-3.539;QD=8.86;ReadPosRankSum=0.266;SOR=1.905;set=HC	GT:AD:AF:DP	0/1:59,22:0.27:81
chr12	42538356	.	T	C	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=13.313;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-3.558;QD=8.72;ReadPosRankSum=0.288;SOR=1.898;set=HC	GT:AD:AF:DP	0/1:60,22:0.27:82
chr12	42538366	.	AC	TT	684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=9.065;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-3.567;QD=9.13;ReadPosRankSum=-0.150;SOR=1.709;set=HC	GT:AD:AF:DP	0/1:55,20:0.27:75
chr12	42538371	.	G	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=9.779;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-3.583;QD=8.39;ReadPosRankSum=-0.499;SOR=1.971;set=HC	GT:AD:AF:DP	0/1:53,19:0.26:72
chr12	42538383	.	A	G	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=15.815;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-3.889;QD=6.32;ReadPosRankSum=0.339;SOR=2.824;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr12	42538386	.	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=15.568;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-3.796;QD=6.66;ReadPosRankSum=-0.291;SOR=2.828;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr12	42538395	.	C	G	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=20.626;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-4.036;QD=5.61;ReadPosRankSum=-0.584;SOR=3.609;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr12	42538406	.	C	T	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.602;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=22.005;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-4.526;QD=2.65;ReadPosRankSum=0.553;SOR=4.405;set=HC	GT:AD:AF:DP	0/1:50,8:0.14:58
chr12	42538412	.	C	T	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=19.613;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.679;QD=2.85;ReadPosRankSum=-0.088;SOR=4.170;set=HC	GT:AD:AF:DP	0/1:48,7:0.13:55
chr12	42538415	.	C	G	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.679;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=19.383;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.641;QD=1.96;ReadPosRankSum=-0.645;SOR=4.171;set=HC	GT:AD:AF:DP	0/1:47,7:0.13:54
chr12	42538423	.	A	G	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.130;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=16.289;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.961;QD=1.29;ReadPosRankSum=-1.598;SOR=3.907;set=HC	GT:AD:AF:DP	0/1:48,6:0.11:54
chr12	42538428	.	G	C	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.298;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=16.344;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-5.425;QD=0.56;ReadPosRankSum=-1.598;SOR=3.601;set=HC	GT:AD:AF:DP	0/1:50,5:0.09:55
chr12	42707437	rs3761677	C	G	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	42717961	rs3747557	G	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:3,91:0.97:94
chr12	42729891	rs7296357	T	G	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	42768646	rs59428088	G	GT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=4.815;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.334;QD=3.95;ReadPosRankSum=0.117;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:30,18:0.38:48
chr12	42778922	rs1669906	G	A	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	42781178	rs2243465	A	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	42787579	rs1376931	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	42839836	rs1669885	A	C	12717.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.276;ClippingRankSum=0.000;DB;DP=501;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=-0.791;SOR=0.339;set=HC	GT:AD:AF:DP	1/1:2,498:1.00:500
chr12	42853058	rs68074167	GT	G	490.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.401;QD=16.36;ReadPosRankSum=-0.125;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr12	42853350	rs1043656	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	42854205	rs3747562	A	G	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	42854208	rs3747563	A	G	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.17;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	42859961	rs12230583	A	G	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	42862750	rs2708062	T	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	43769228	rs10506226	A	C	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	43769276	rs10880473	T	C	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	43769718	rs7972295	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	43770196	.	CAT	C	101	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=1;HapScore=2;MGOF=24;MMLQ=25;MQ=60.0;NF=0;NR=2;PP=101;QD=72.0;SC=AGAACTTAATCATAGAAATAT;SbPval=1.0;Source=Platypus;TC=3;TCF=0;TCR=3;TR=2;WE=43770205;WS=43770186;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr12	43770617	rs9804726	G	A	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	43817445	rs6582463	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	43819298	rs10785430	G	A	8411.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	43822171	rs7310011	G	A	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	43826204	rs7297737	C	T	6795.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	43826277	rs201811876	T	TA	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.368;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:126,33:0.21:159
chr12	43827506	rs199984116	AACAC	A	211.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.36;QD=30.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	43827720	rs7301900	T	C	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	43828141	rs7302446	T	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	43833416	rs3764469	C	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	43837403	rs200301712	GT	G	643.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:8,41:0.84:49
chr12	43846272	rs7307955	C	T	5035.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	43860398	rs74913159	C	T	578.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	43884330	rs7297170	C	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	43945603	rs275602	A	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	43945628	rs143097007	CT	C	4889.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	44130123	rs113047505	GA	G	1309.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	44132250	rs10880558	T	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	44139805	rs11182246	A	T	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	44140080	rs59209906	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	44148259	rs1057190	T	C	6487.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	44171602	rs4251500	A	T	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	44177354	rs4251529	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	44180295	rs4251545	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	44191625	rs12829856	G	A	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	44192424	rs35482343	T	TA	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.19;ReadPosRankSum=-0.399;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:16,36:0.69:52
chr12	44196350	rs34291769	T	C	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.312;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	44199961	rs71435960	C	CCTCCCGGCT	2961.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	44338153	rs6582491	T	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	44338173	rs72327763	GGTGA	G	2167.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	44404068	rs73087652	T	A	10074.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.79;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	44404074	rs7980005	A	G	10340.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	44537495	rs115427402	C	T	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	44693604	rs7953992	A	G	2460.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	44913682	rs60797262	GA	G	323.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	44913698	rs59255697	C	T	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	44916026	rs56318423	A	G	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	44926334	rs2270479	T	A	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	45004796	rs2305449	C	T	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	45004824	rs2305448	G	A	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	45059237	rs2290353	T	G	3330.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:2,119:0.98:121
chr12	45170006	rs4768572	T	C	4805.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	45269284	rs7295923	C	T	3926.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	45410075	rs1224442	A	G	7089.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	45417666	rs2731038	T	C	2866.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	45444238	rs11182810	T	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	45444264	rs11182811	G	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	45664213	rs10748415	G	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	45695735	rs4140756	C	A	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	45771901	rs36059278	GT	G	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=-0.043;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr12	46321514	rs7315731	A	T	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	46322654	.	TA	T	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.563;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr12	46367903	rs10880879	T	C	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	46367939	rs11183268	G	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	46385815	rs11574952	C	T	9439.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	46582540	rs1045278	T	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	46589988	rs11608815	C	T	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	46591906	rs7954255	T	C	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	46601056	rs2289768	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	46758462	rs61748367	G	A	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	47158995	rs12582305	G	A	49.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	47159123	rs4768756	A	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	47162938	rs2216433	T	G	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	47168898	rs180414	G	A	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	47170617	rs77993723	A	G	2010.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.71;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	47170621	rs12316767	C	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.41;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	47173830	rs2287471	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	47471439	rs2269828	G	A	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:1,229:1.00:230
chr12	47581629	rs832733	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	47758032	rs215383	A	G	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	47761313	rs11419253	A	AT	2361.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:28,135:0.83:163
chr12	48081539	rs7136422	C	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	48081637	rs7136561	C	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	48104746	rs1235152	G	C	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	48110325	rs1235153	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	48119049	rs7967546	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr12	48132451	rs2072116	T	C	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	48134300	rs12828238	G	A	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	48134381	rs35703007	CG	C	4080.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	48134634	rs11168219	C	T	5228.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	48134695	rs2074533	T	C	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	48142343	rs12424297	T	C	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	48142418	rs757281	C	G	2575.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	48142636	rs12422983	C	T	6582.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	48143095	rs149061709	G	GCTCTGGT	15026.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	48143360	rs757280	T	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	48143978	rs12423645	C	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	48144243	rs757279	A	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	48144925	rs2016123	T	C	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr12	48145104	rs1018939	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	48145153	rs757287	G	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	48145171	rs757286	C	T	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	48151822	rs11168230	C	G	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	48164758	rs2544025	G	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	48185167	rs11832133	G	C	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	48298245	.	TAA	T	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.211;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=6.82;ReadPosRankSum=0.193;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:31,27:0.47:58
chr12	48360947	.	T	TA	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=2.185;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:159,50:0.24:209
chr12	48373181	rs12368284	A	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	48373718	rs11443755	A	AC	1404.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	48374513	rs1635554	A	G	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	48376213	rs12811832	G	A	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	48376969	rs11168338	C	A	8760.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr12	48377970	rs1635550	A	G	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	48386553	rs1635534	A	G	2186.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	48386577	rs1793915	G	T	3467.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	48387052	rs1793912	A	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr12	48389023	rs10875716	C	T	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	48389643	rs1034762	A	C	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr12	48392433	rs1793958	A	G	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	48398002	rs3803184	G	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr12	48398080	rs3803183	T	A	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	48468588	rs59901073	C	CA	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=0.722;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr12	48490243	rs71746488	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.461;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-0.424;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:76,17:0.18:93
chr12	48537624	rs4075913	A	G	7956.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr12	48539482	rs8716	T	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	48547128	rs11168428	C	T	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	48578325	rs10783231	A	C	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	48578631	rs7486941	G	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	48723324	rs2732441	C	G	8574.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr12	48736985	rs2732481	T	G	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr12	48737245	rs2732484	A	C	2465.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr12	48738236	rs2634676	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	48738555	rs34591795	GA	G	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	48740855	rs2634675	A	G	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	48741219	rs901962	A	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	48877056	rs7972785	T	C	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	48879951	rs11168599	T	G	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=26.04;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	48888594	rs11458	C	T	7335.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	48888689	rs9268	C	G	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	48888763	rs2705132	A	G	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	48919556	rs2731073	A	G	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	48919659	rs4075258	TG	CA	7496.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	48919796	rs12425460	C	T	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	48921533	rs7299323	C	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	48953504	rs11168637	G	A	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	48954040	rs1807757	A	G	3847.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	48954225	rs7312017	G	C	7886.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr12	48962869	rs2232566	A	G	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	49091638	rs11168689	A	T	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.73;ReadPosRankSum=0.785;SOR=0.082;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	49091972	rs11420004	G	GA	179.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=7.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=0.568;SOR=2.245;set=HC	GT:AD:AF:DP	0/1:3,14:0.82:17
chr12	49177113	rs2453486	T	G	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	49218171	rs2070615	A	G	5051.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	49218810	rs11379348	G	GT	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	49219569	rs2453469	A	G	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	49221622	rs1045340	G	A	14700.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr12	49228077	rs2453473	G	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	49230035	rs1057908	T	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr12	49237652	rs2446993	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	49238024	rs2446994	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	49259194	rs2453489	T	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	49298340	rs3825184	C	T	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	49319036	rs12829682	A	C	13737.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr12	49332451	rs148694584	T	TGA	2385.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:3,68:0.96:71
chr12	49333269	rs61942168	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	49334044	rs708242	G	C	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	49334762	rs12122	G	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	49362779	rs833834	T	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	49364391	rs833843	G	A	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	49390677	rs10783299	T	C	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr12	49398862	rs2293445	G	A	4607.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	49416046	rs34546217	TC	T	5478.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	49423460	rs33963995	GT	G	277.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	49424616	rs11614738	G	A	6845.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	49425978	rs3741622	T	C	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr12	49427652	rs3782357	C	T	6586.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	49434074	rs10747559	C	A	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	49436724	rs12580349	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	49439659	rs833818	C	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	49442356	rs5798089	C	CA	4058.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	49442813	rs2304275	T	C	1033.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	49444545	rs2241726	G	A	3488.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	49460882	rs10715716	CT	C	522.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-0.041;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr12	49463352	rs71080168	CT	C	11327.73	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.86;SOR=1.698;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	49463353	.	TC	CT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=13;MMLQ=24;MQ=60.0;NF=129;NR=67;PP=2947;QD=20;SC=CACCACCAACTCTTCCAATCC;SbPval=0.62;Source=Platypus;TC=211;TCF=135;TCR=76;TR=196;WE=49463381;WS=49463343;set=Platypus	GT:AD:AF:DP	1/1:15,196:0.93:211
chr12	49463356	.	TCCAATCCTCCACTCTTCC	TTCCTCCACTCTTCC,T	11568.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=254;set=Intersection	GT:AF:DP	1/1:1.00:253
chr12	49463361	rs200055056	TCCTCCACTCTTCC	T	11543.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.37;QD=44.23;SOR=1.712;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	49667103	rs9668136	A	T	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	49719149	rs111795391	TA	T	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.193;QD=2.02;ReadPosRankSum=-0.276;SOR=0.214;set=HC	GT:AD:AF:DP	0/1:22,12:0.35:34
chr12	49893815	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=1.500;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr12	50152071	rs191728675	G	A	7465.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr12	50152601	.	CTT	C	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-0.300;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:34,12:0.26:46
chr12	50174299	rs61402274	A	C	10570.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=33.56;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr12	50174307	rs111500583	CA	C	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.626;QD=2.16;ReadPosRankSum=0.142;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:228,93:0.29:321
chr12	50188391	rs12314502	C	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	50188395	rs60633549	CA	C	1323.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chr12	50188434	rs2603105	T	A	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	50189807	rs2720298	C	A	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	50189834	rs2603104	T	G	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	50192009	rs1075366	T	C	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	50197880	rs7953534	G	A	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr12	50271372	rs1248263	G	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	50283465	rs643971	G	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	50290728	rs297935	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	50297670	rs706795	T	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	50304588	rs487165	A	T	7031.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	50304949	rs450798	G	A	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	50305007	rs394119	C	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	50348078	rs426496	T	C	7559.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr12	50348674	rs402813	C	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	50349090	rs410837	A	G	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	50349123	rs371777	C	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	50349143	rs403201	C	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	50349411	rs457487	C	A	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	50349765	rs467323	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	50356174	rs139560378	TGGG	T	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	50358073	rs296753	C	G	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	50368013	rs296748	C	T	3244.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	50386015	rs296737	C	T	5732.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	50393372	rs378943	G	T	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	50452708	rs653576	C	G	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	50453711	.	G	A	3605.77	.	AC=1;AF=0.500;AN=2;DP=373;set=Intersection	GT:AD:AF:DP	0/1:193,180:0.48:373
chr12	50467644	rs706792	G	T	5545.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	50467769	rs706793	G	A	12189.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr12	50473660	rs404751	A	G	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	50482211	rs646782	T	C	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	50498139	rs836178	T	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	50517454	rs113279297	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=1.721;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:35,18:0.34:53
chr12	50526814	rs2242507	G	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	50529936	rs7136570	A	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	50535710	rs7131794	A	G	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	50535955	rs10747571	C	T	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	50537060	rs2277355	C	G	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	50537815	rs7302981	A	G	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	50538625	rs2008537	A	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	50642314	rs3815671	A	G	2966.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	50744094	rs7296277	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	50744119	rs7296291	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	50744171	rs7312252	T	C	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	50744753	rs10506292	T	C	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	50745703	.	T	G	891	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=1;MGOF=23;MMLQ=25;MQ=57.51;NF=38;NR=33;PP=891;QD=13.0390311626;SC=GGGGTGAGAGTGATCCCCTGA;SbPval=0.53;Source=Platypus;TC=239;TCF=128;TCR=111;TR=71;WE=50745711;WS=50745693;set=Platypus	GT:AD:AF:DP	1/0:168,71:0.30:239
chr12	50746348	rs7304951	A	G	6041.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr12	50746917	rs10876023	A	G	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	50747005	rs10876024	T	C	5862.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=26.53;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr12	50749221	rs4435082	G	C	7972.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	50749227	rs4625558	T	G	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	50750040	rs7964439	C	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	50754563	rs12303082	T	G	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	50821776	rs148662102	C	CT	114.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.824;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=-0.850;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	50824232	rs11612002	A	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	50829263	rs113327207	T	TTATTC	313.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	50856259	rs5798139	C	CA	1059.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.307;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.174;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:38,74:0.66:112
chr12	51034721	rs2731436	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	51076844	rs2731447	C	T	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	51089572	rs2684890	G	A	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	51089616	rs2684891	T	C	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	51135167	rs1975351	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	51135275	rs1866422	T	C	3792.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	51182122	rs10747592	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	51203226	rs4986837	GT	G	666.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	51203371	rs1129406	C	T	5305.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=43.49;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	51203376	rs4986838	T	C	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	51236931	rs829121	G	A	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	51319346	rs2359005	A	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	51382232	rs161044	T	C	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	51386529	rs67409672	AG	A	207.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=2.473;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-0.106;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:3,17:0.85:20
chr12	51386839	rs224569	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	51386868	rs224570	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	51386872	rs1632791	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.43;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	51399050	rs224589	T	G	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr12	51399206	rs141728916	C	T	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	51399997	rs224590	A	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.06;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	51400084	rs140582579	AAAAC	A	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	51402905	rs445520	T	G	7279.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.078;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.403;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.19;ReadPosRankSum=1.383;SOR=0.520;set=HC	GT:AD:AF:DP	1/1:1,288:1.00:289
chr12	51404467	rs427020	C	T	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	51404679	rs370462	C	T	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	51453366	rs3190077	A	C	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	51461425	rs4768956	C	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	51461793	rs2029146	G	A	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	51467596	rs11169696	A	C	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	51492406	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.432;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr12	51502791	rs7134695	C	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	51504799	rs7978782	T	C	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	51504894	rs11308041	GT	G	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.63;ReadPosRankSum=0.109;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	51511244	rs10876138	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	51512637	rs3839987	CT	C	1604.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	51636259	rs1049467	C	T	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	51693357	rs2288368	G	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	51695708	rs74093810	C	T	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	51695791	rs151019240	GT	G	9582.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	51696500	rs7975715	G	A	4388.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	51707626	rs7312857	C	T	4139.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	51707801	rs143416791	CTTATTTAT	C	573.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	51722311	rs7138439	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	51722409	rs17860373	G	GT	5554.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	51723499	rs17860364	T	C	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	51733734	rs17860317	G	A	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	51733951	rs12816187	A	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	51736596	rs5798169	AT	A	366.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr12	51737439	rs17860302	G	A	342.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	51737607	rs17860299	G	A	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	51739648	rs17860287	C	G	3476.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.01;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	51740387	rs57614420	ACTGGACCATATCC	AACCATATCC,A	5994.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=155;set=Intersection	GT:AF:DP	1/1:1.00:133
chr12	51740393	.	CCATATCCACTT	C	5984.73	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	51740407	.	CATAA	C	5992.73	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	51740415	.	A	AAG	5998.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	51740416	.	C	CG	5999.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	51748326	rs2288369	G	A	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	51748395	rs7971653	G	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	51752085	.	G	GT	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=-1.049;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:32,16:0.33:48
chr12	51752895	.	C	T	3181.77	.	AC=2;AF=1.00;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	51796904	rs907350	T	C	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.211;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	51863643	rs4491281	T	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	51879826	rs10783445	G	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	52080965	rs4761829	C	T	9859.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr12	52099153	rs2291265	C	T	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	52100566	rs10783474	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	52156255	rs303767	A	C	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	52159438	rs56879517	G	GT	1344.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.469;QD=17.93;ReadPosRankSum=0.118;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:5,70:0.93:75
chr12	52163789	rs303808	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	52173781	rs76315468	G	GTTC	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	52184271	rs303815	T	C	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	52200028	rs303828	C	A	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	52200742	rs60637	C	A	10318.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr12	52204246	rs172559	T	C	6045.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	52215102	rs303819	T	G	9396.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	52283225	rs150583334	G	A	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	52284233	rs706832	T	C	11327.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr12	52284500	rs34494292	A	G	13361.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr12	52285086	rs3180417	G	A	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	52345497	rs10540557	TGCG	T	2752.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	52404618	rs1298913	T	G	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	52408422	rs1283166	A	G	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	52435691	rs7316491	G	A	6007.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	52565322	rs3741737	G	T	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	52566047	rs3741736	G	A	4621.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	52574780	rs4762060	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	52627007	rs7308751	C	T	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	52627215	rs7308888	A	G	6241.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	52631313	rs6580870	A	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	52631394	rs10637094	C	CAT	6362.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	52631510	rs10546862	ATGTG	A	596.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:2,17:0.89:19
chr12	52635241	rs2078201	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	52635443	rs2243588	T	C	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	52639302	rs2608009	G	C	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	52645754	rs1894035	T	C	10067.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,378:1.00:378
chr12	52660812	rs2852474	G	A	6039.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	52660904	rs2857686	C	T	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	52661192	rs1870222	A	G	7992.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	52661196	rs2077346	G	A	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.03;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	52661209	rs1870223	T	C	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	52661302	rs1870224	C	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	52679937	rs3660	C	G	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	52680008	rs3657	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	52681416	rs7300801	T	C	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	52681437	rs3187034	A	G	4084.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	52681533	rs7300941	T	C	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:1,304:1.00:305
chr12	52681714	rs6580872	T	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	52681733	rs7954186	A	C	6849.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;MQ=59.87;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr12	52681925	rs6580873	A	C	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	52681968	rs6580874	T	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.03;QD=33.63;SOR=4.255;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	52682141	rs12812669	G	A	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	52699548	rs2032360	T	C	7564.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:2,295:0.99:297
chr12	52708420	rs2857671	G	A	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	52708565	rs2857670	A	G	6516.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	52708730	rs113407094	A	AGGTGT	1131.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	52708978	rs3825221	T	C	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	52709032	rs3741721	T	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	52709222	rs3741720	T	C	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	52709981	rs2270266	C	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	52711450	rs2248619	T	C	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	52712975	rs3741715	G	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	52713218	rs10876276	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	52755097	rs1791627	A	T	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	52755341	rs2298796	T	C	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	52758994	rs2298795	G	C	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	52774235	rs951773	A	G	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:2,268:0.99:270
chr12	52775431	rs2271084	A	G	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	52776143	rs2271085	C	T	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	52776679	rs1732297	A	G	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	52777502	rs1945297	A	G	2938.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	52778772	rs1732303	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	52789509	rs1732264	T	C	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	52789597	rs1732265	A	G	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.14;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	52789605	rs1732266	T	A	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	52789691	rs34479712	A	C	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	52789693	rs11304728	GT	G	3162.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	52790899	rs1791635	T	C	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	52818504	rs298104	T	G	9086.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr12	52822258	rs401926	A	G	12103.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr12	52824352	rs395623	G	A	5025.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr12	52824562	rs443084	T	A	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	52825363	rs1798640	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	52827534	rs67876	C	T	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	52827818	rs298109	T	C	11880.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,466:1.00:466
chr12	52841765	rs388626	G	A	9337.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr12	52842736	rs437014	T	C	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,99:0.99:100
chr12	52844016	rs4024141	T	C	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	52844243	rs28414881	A	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.278;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=44.684;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-13.120;QD=0.96;ReadPosRankSum=0.232;SOR=7.486;set=HC	GT:AD:AF:DP	0/1:436,42:0.09:478
chr12	52844246	rs28542657	A	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.650;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=47.855;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-13.521;QD=0.96;ReadPosRankSum=0.030;SOR=6.192;set=HC	GT:AD:AF:DP	0/1:434,45:0.09:479
chr12	52844265	rs652423	T	C	9776.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:67,414:0.86:481
chr12	52844477	rs5798212	G	GC	2741.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:76,82:0.52:158
chr12	52845801	rs428894	T	C	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	52862767	rs2567	G	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=45.07;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	52862770	rs1053796	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=42.87;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	52862783	rs2568	G	A	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	52863038	rs410562	G	A	6901.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:1,258:1.00:259
chr12	52863213	rs412533	C	T	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	52863621	rs382367	T	G	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:1,384:1.00:385
chr12	52863709	rs452600	C	T	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	52863732	rs434339	C	T	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	52864240	rs415580	G	T	15475.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,585:1.00:585
chr12	52864843	rs604303	G	A	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	52865548	rs28759265	G	C	7469.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr12	52865592	rs644414	A	T	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	52865687	rs391567	C	T	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.07;QD=31.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	52865918	rs425073	G	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.25;QD=33.64;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	52865925	rs17099602	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.64;QD=47.54;SOR=3.500;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	52881376	rs1053857	C	T	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.10;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	52881380	rs1053854	A	C	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	52881428	rs28667515	A	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	52882410	rs144849815	T	TGAA	3998.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	52884283	rs298119	A	G	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	52884557	rs298120	T	C	22571.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	1/1:0,860:1.00:860
chr12	52885019	rs298121	C	T	7781.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr12	52885201	rs298122	C	T	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	52886478	rs376545	T	C	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	52886490	rs711317	A	G	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	52912906	rs641621	G	T	5696.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.70;QD=44.51;SOR=2.056;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	52912909	rs641615	G	T	5625.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.59;QD=44.65;SOR=2.087;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	52913029	rs607860	C	T	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	52938364	rs2292507	T	C	6911.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	52938497	rs10783518	A	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	52938535	rs10783519	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	52939407	rs10580903	AGAG	A	4160.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	52939994	rs11170171	T	C	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	52941529	rs4761929	T	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	52941784	rs3839975	CAG	C	8693.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	52942235	rs12308719	G	T	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	52942998	rs635206	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	52943144	rs4761930	G	A	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	52944060	rs10747643	T	C	2336.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	52964934	rs669865	T	G	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	52965173	rs670741	T	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	52965722	rs673363	T	C	4901.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	52965761	rs673449	C	T	8822.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	52965782	rs673476	T	C	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	52966137	rs685720	T	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	52980078	rs17116392	T	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	52980902	rs71443262	T	G	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	52981442	rs11170183	C	A	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	52984620	rs12818575	C	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	52985293	rs12824366	A	G	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	52986132	rs617820	T	A	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	52986187	rs12833456	T	C	4368.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.30;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	52992812	rs11170187	T	C	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr12	53002956	rs591636	T	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	53004654	rs595624	C	G	6651.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr12	53043636	rs632952	G	T	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	53045777	rs11835758	G	A	11182.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr12	53069222	.	CACCTCCGGAGCCGTAGCTGCT	C	5376.73	.	AC=2;AF=1.00;AN=2;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,203:0.99:205
chr12	53070121	rs698170	T	G	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr12	53070145	rs936958	G	A	10452.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr12	53071338	rs626480	A	G	2603.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	53071382	rs2741159	A	C	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	53071560	rs2741158	A	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	53073471	rs3837476	C	CA	2428.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	53084928	rs11170236	T	G	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr12	53085089	rs636127	T	C	3981.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	53086645	rs3782489	G	A	9105.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr12	53089371	rs10783529	G	A	262.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	53089405	rs10783530	T	C	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	53089460	rs5798218	GACCC	G	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	53090190	rs7138818	C	T	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	53091566	rs1567759	C	A	7569.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr12	53096913	rs1625862	G	A	17773.77	.	AC=2;AF=1.00;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr12	53162528	rs2280480	G	A	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	53162773	rs1464423	A	G	10365.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:28,451:0.94:479
chr12	53165621	rs12828901	A	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	53165940	rs6580904	C	T	10438.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr12	53167313	rs7399317	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	53167395	rs11170271	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	53184491	rs11170279	A	G	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	53186122	rs4432093	G	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	53187150	rs4919750	C	T	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	53189413	.	ACCAAAGCCACCAGCCCCT	A	14574.73	.	AC=2;AF=1.00;AN=2;DP=954;set=Intersection	GT:AD:AF:DP	1/1:6,550:0.99:556
chr12	53202380	rs2307028	T	C	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	53204614	rs2307027	C	T	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	53204757	rs10783539	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	53207583	rs11267392	C	CCACCAAAGCCACCAGTGCCGAAACCAGCTCCGAAGCCGCCGG	16439.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.734;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=3.077;MLEAC=2;MLEAF=1.000;MQ=60.38;MQRankSum=0.254;QD=62.04;ReadPosRankSum=-0.473;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,264:1.00:265
chr12	53216184	rs4415849	A	G	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	53217056	rs10876353	G	A	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	53217701	rs10876354	C	A	3592.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	53227803	rs2638497	A	G	10093.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr12	53400440	rs61927957	T	G	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.07;SOR=1.219;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	53416119	rs7975725	T	C	4374.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	53416251	rs10506315	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	53421746	rs59856997	CT	C	2798.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:6,143:0.96:149
chr12	53432088	rs7968918	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	53433089	rs1548204	C	A	3552.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	53433486	rs8916	C	T	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	53433709	rs1356993	C	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	53433788	rs1356994	A	G	4077.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	53442956	rs12369033	G	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	53449735	rs2364153	T	C	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	53567032	.	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=0.290;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr12	53573454	rs200549672	C	CA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=8.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=0.298;SOR=0.038;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr12	53647373	rs10876422	T	C	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr12	53662624	rs6580942	C	A	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	53662735	rs4758965	C	T	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	53664148	rs4758963	G	A	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	53664308	rs146243389	GTTTGGGGTTGCTCCACTGCCCTCAAACAGC	G	2371.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,76:0.97:78
chr12	53666713	rs4759086	A	G	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	53670545	rs1318648	C	A	13463.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,504:1.00:504
chr12	53671549	rs2272313	A	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	53677072	rs1609473	T	G	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.57;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	53677089	rs4454760	G	A	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	53681883	rs1110719	A	T	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	53682267	rs3080422	CAA	C	3914.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	53682326	rs1110720	G	A	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	53686703	rs1056685	G	A	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	53689190	rs1870240	C	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	53690188	rs59765323	CT	C	542.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr12	53691962	rs2694861	C	A	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	53692920	rs34165644	C	CA	436.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=-0.035;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:6,26:0.81:32
chr12	53692955	rs1020745	G	A	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	53693277	rs56249432	TG	T	402.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	53693532	rs1534284	AA	GC	8827.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	53700848	rs1534282	C	T	8594.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr12	53700860	rs711316	A	G	7484.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr12	53702371	rs4759287	T	C	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr12	53703021	rs1546808	G	A	3817.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	53708011	rs7953255	G	C	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	53709708	rs7960963	G	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	53714290	rs4759232	T	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	53714496	rs4759231	A	G	3482.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	53714509	rs7298879	T	G	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	53714993	rs4759020	C	T	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	53722098	rs7138938	A	G	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	53722128	rs7139272	G	A	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	53862701	rs11447052	C	CT	181.27	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.07;ReadPosRankSum=-0.653;SOR=0.537;set=HC	GT:AD:AF:DP	1/1:3,15:0.83:18
chr12	53877562	rs784565	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	54067544	rs2857000	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	54116727	.	CA	C	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.768;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=4.877;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=-1.168;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr12	54339052	rs4759058	C	A	4639.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	54348554	rs72049639	CGGGAT	C	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=5.136;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	54348571	rs199806153	G	GA	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.34;QD=42.67;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	54348578	rs55661050	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=42.57;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	54349365	rs10876524	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	54367061	rs4759315	T	G	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	54635734	rs12809801	A	G	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	54677980	rs7967622	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	54687232	rs10506328	A	C	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	54764618	rs2706248	T	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	54764962	rs2244933	G	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	54765005	rs3830651	TCTAA	T	1578.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	54767613	rs2706258	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	54767981	rs3832831	C	CAG	1507.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	54772755	rs2706256	C	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	54796757	rs7306692	C	T	6054.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr12	54797393	rs12818138	G	A	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	54799450	rs1249378	A	G	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr12	54802493	.	CAA	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.401;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.657;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.670;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr12	54805753	rs1922254	G	T	6787.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	54805765	rs1249181	C	T	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	54905815	rs2458409	C	G	4372.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	54910233	.	T	TG	93.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=1.366;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr12	54910234	.	C	T	757.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.362;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.79;ReadPosRankSum=0.305;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:14,34:0.71:48
chr12	54910837	rs1691630	G	A	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr12	54913213	rs10686138	A	ATT	416.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.782;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=0.972;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr12	54920566	rs12369172	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	54920591	rs12367426	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	54925750	rs10747697	A	C	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	54925871	rs59947538	CTT	C	2920.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.560;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.47;ReadPosRankSum=0.090;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:18,112:0.86:130
chr12	54932788	rs4758966	T	C	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	54955324	rs10747699	T	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	54955461	rs9668037	A	G	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	54955545	rs3036634	CGT	CGTGT,C	1840.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/1:0.91:69
chr12	54955647	rs1552957	G	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	54963491	rs71070829	C	CT	1231.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;MQRankSum=0.411;QD=18.95;ReadPosRankSum=-1.312;SOR=0.507;set=HC	GT:AD:AF:DP	1/1:4,61:0.94:65
chr12	54969998	rs1249949	A	G	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	54970454	rs1249950	T	C	5342.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr12	54971347	rs1249951	C	G	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	54974803	rs8407	C	T	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	54975837	rs1249958	T	C	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	54977925	rs2292490	T	G	279.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	54978225	rs1976821	T	C	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	54982040	rs142801029	A	AC	218.19	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,10:0.91:11
chr12	55002065	rs1716356	G	A	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	55002409	rs11170988	G	A	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	55004150	rs937308	C	A	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	55028465	.	A	G	324.77	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	55028808	rs11832807	C	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	55038408	rs11338265	AT	A	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.765;QD=4.78;ReadPosRankSum=1.133;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr12	55039662	rs76825081	A	C	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	55041079	rs903768	T	A	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	55042118	rs78394705	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr12	55248357	rs1048371	G	T	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	55248739	rs10783684	T	C	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	55250549	rs10783685	T	G	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr12	55250612	rs1349910	A	G	17302.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:4,673:0.99:677
chr12	55250714	rs10876639	G	A	8342.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr12	55252202	rs1948139	C	T	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	55421250	rs2656804	C	T	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,56:0.98:57
chr12	55421299	rs2243885	C	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	55688267	rs7308594	G	A	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	55714406	rs5798345	C	CA	5257.73	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	55758832	rs7962135	T	C	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	55759878	rs10876751	A	G	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	55794264	rs7967395	A	G	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	55794976	rs7971073	A	G	7751.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	55805647	rs12825123	A	G	12005.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr12	55806134	rs12833263	T	C	7401.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:1,277:1.00:278
chr12	55806437	rs114890660	T	C	9931.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr12	55807293	rs3887805	A	G	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	55807588	rs12826694	C	T	6298.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:243,303:0.55:546
chr12	55808469	rs7132076	C	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	55820958	rs57387180	CA	C	695.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:10,45:0.82:55
chr12	55944926	rs7313959	G	A	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	55945119	rs7313899	A	G	23329.77	.	AC=2;AF=1.00;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	1/1:0,881:1.00:881
chr12	56030938	rs10876838	C	T	10163.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr12	56031273	rs7970885	G	A	15406.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr12	56079084	rs3852533	C	G	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	56080148	rs3782239	T	C	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	56080164	rs7306191	T	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	56082506	rs35887029	CA	C	450.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.033;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.343;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:5,31:0.86:36
chr12	56082785	rs3782240	C	G	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	56088206	rs7953669	T	C	10166.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr12	56088773	rs2293410	C	T	6933.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr12	56089357	rs1800974	C	T	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	56089554	rs2293411	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	56090038	rs7974721	C	T	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	56091617	rs2293412	A	G	19482.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,756:1.00:756
chr12	56093817	rs11171660	T	G	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	56095367	rs11356595	CT	C	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.509;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.791;QD=10.62;ReadPosRankSum=-0.266;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:10,43:0.81:53
chr12	56096816	rs2293413	T	C	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr12	56105977	rs12578814	G	A	2483.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	56151291	rs7068	T	C	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	56220974	.	CAA	C,CA	737.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.69;ReadPosRankSum=1.025;SOR=0.687;set=HC	GT:AD:AF:DP	1/2:12,22,35:0.32,0.51:69
chr12	56236043	rs2291268	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	56236318	rs7310325	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	56236531	rs7294345	A	G	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	56295544	rs147424544	GAAGT	G	2016.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	56295734	rs7302270	A	G	4802.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr12	56298115	rs61956424	T	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	56298120	rs61956425	A	G	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	56326493	rs57799285	GCA	G	613.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.418;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=4.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.55;ReadPosRankSum=2.226;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:2,23:0.92:25
chr12	56330572	rs7297871	G	A	5719.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	56335107	rs1136082	A	G	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	56348028	rs1052206	G	A	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	56355618	.	AT	A	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.637;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:22,16:0.42:38
chr12	56398454	rs773115	G	C	3284.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	56415472	.	C	CTGTG	333.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.797;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.184;QD=30.35;ReadPosRankSum=-0.477;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr12	56417403	rs2658479	T	C	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	56420473	.	CA	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.091;QD=3.99;ReadPosRankSum=0.164;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	56426577	rs1619653	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	56428344	rs2452822	G	C	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	56435929	rs1131017	C	G	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	56436472	rs705706	T	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	56477694	rs2271194	A	T	3430.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr12	56478658	rs7971751	A	C	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=2.342;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	56482180	rs2292239	T	G	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	56492195	rs375692480	CA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.068;QD=2.08;ReadPosRankSum=1.812;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	56504143	rs370708635	CA	C	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=2.096;QD=1.06;ReadPosRankSum=-1.188;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,9:0.29:31
chr12	56510922	.	CT	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.443;QD=0.82;ReadPosRankSum=-1.119;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:47,22:0.32:69
chr12	56528385	rs36091576	A	AT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=0.175;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	56551339	rs28365930	C	CAAA	4541.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	56556167	.	T	TA	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.000;QD=1.11;ReadPosRankSum=0.220;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:225,60:0.21:285
chr12	56564056	rs60041436	CTTTT	C	1610.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,50:0.96:52
chr12	56575742	rs773644	T	G	2583.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	56601237	rs703823	A	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	56604416	rs10532115	GAT	G	2381.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	56604420	rs79677444	T	C	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	56607927	rs4759218	C	T	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	56625045	rs1274497	T	C	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	56629276	rs901073	A	C	2099.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	56647911	rs808919	G	C	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	56649601	rs1274490	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	56650706	rs187901290	G	C	646.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	56650707	.	TA	T	637.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	56650742	rs1274491	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	56717466	rs773665	C	T	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	56722060	rs1918496	T	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	56726518	rs2643626	G	A	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	56814570	rs812279	T	G	2876.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	56815922	rs774047	C	T	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	56818982	rs12824030	G	C	1793.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	56818983	rs35382350	C	CT	1784.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	56821998	rs774026	A	G	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	56822378	rs774027	T	A	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	56822641	rs774028	G	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	56825311	rs774033	C	T	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	56825981	rs774039	A	G	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	56826061	rs774040	G	A	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	56827753	rs34697596	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	56827974	rs2638312	C	T	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	56845296	rs2643622	T	C	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	56845358	rs7953824	T	C	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	56862886	rs2657881	T	C	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	56869577	rs5798384	C	CT	3862.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	56869949	rs34325581	C	CT	883.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr12	56869971	rs79174190	TTTGTCACCC	T	1257.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	56915782	rs808929	G	A	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	56933651	rs2657902	G	A	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	56933722	rs2657903	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	56956213	rs3759091	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	56982290	rs2470385	C	T	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	57065713	rs2958154	C	T	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	57106660	rs4788	A	T	10201.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr12	57106810	rs898609	G	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	57108203	rs4902	A	G	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	57109792	rs2958149	A	G	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	57109931	rs2926747	A	T	2908.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	57111880	.	GGGGGTGGGGTAGCTAGACCTCCTTTTGGGGAGGGAGGAGTTGCAGCTGGGGTTGTGGGTGCCCCTTTGT	G	403.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.41;QD=26.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	57111912	.	G	A	80	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=2;MGOF=36;MMLQ=22;MQ=49.8;NF=3;NR=3;PP=80;QD=19.1285354245;SC=CTTTTGGGGAGGGAGGAGTTG;SbPval=0.46;Source=Platypus;TC=20;TCF=12;TCR=8;TR=6;WE=57111920;WS=57111902;set=Platypus	GT:AD:AF:DP	1/0:14,6:0.30:20
chr12	57112637	rs11171951	G	A	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.73;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	57114100	rs2926743	A	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	57114307	rs2958127	A	T	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	57132186	rs56401813	AT	A	4048.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	57133140	rs1131514	T	G	2145.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.450;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.332;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=-0.664;SOR=0.495;set=HC	GT:AD:AF:DP	1/1:1,83:0.99:84
chr12	57137828	rs1026565	T	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	57139722	rs11331084	CA	C	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.016;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=8.129;MLEAC=1;MLEAF=0.500;MQ=61.02;MQRankSum=0.996;QD=8.32;ReadPosRankSum=-1.770;SOR=3.442;set=HC	GT:AD:AF:DP	0/1:4,11:0.73:15
chr12	57140457	rs63023761	CACAA	C	90.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.157;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-0.649;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr12	57140459	rs146032442	CAA	C	249.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.929;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=0.581;SOR=0.264;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr12	57140506	rs2958130	G	A	8768.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr12	57146069	rs2277339	T	G	5231.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	57176089	rs3816616	C	G	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	57486647	rs324019	A	G	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	57492996	rs841718	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	57502182	rs324011	C	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	57581028	rs6581127	C	G	7638.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr12	57585144	rs1800139	C	T	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	57587839	rs1800187	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	57589784	rs7397167	A	C	15374.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr12	57589865	rs1800189	C	T	13583.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:1,511:1.00:512
chr12	57590735	rs7308552	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	57590869	rs7308698	T	C	9435.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	57592557	rs1800168	C	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	57593101	rs1140648	G	A	11018.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr12	57593894	rs1800159	A	G	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	57595433	rs35292422	C	T	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	57600281	rs1800160	C	T	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:2,143:0.99:145
chr12	57602815	rs7956957	C	G	1752.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	57604802	rs1800164	A	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	57605168	rs10783814	T	C	12176.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr12	57606386	rs7304504	A	G	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr12	57610616	.	GCCGCCGCTC	G	322.75	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	57614958	rs7134826	G	T	8464.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr12	57619209	rs7979061	C	G	5112.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	57619589	rs7979451	C	T	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	57637593	rs3204635	G	A	13054.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr12	57639190	rs7139342	C	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	57643373	.	G	T	2698.77	.	AC=2;AF=1.00;AN=2;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	57649840	rs4075325	C	T	6735.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr12	57652963	rs6581131	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	57666405	rs35275303	TG	T	132.80	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	57693060	rs4760126	G	A	1743.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	57704005	rs57612216	GA	G	1601.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:10,93:0.90:103
chr12	57829129	rs560048	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	57843014	rs776037	C	T	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	57849768	rs507562	C	G	2284.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	57858308	.	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=3.676;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-0.674;QD=2.22;ReadPosRankSum=-0.093;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:20,11:0.35:31
chr12	57865928	rs474058	A	C	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	57869241	rs527226	T	C	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	57869500	rs524522	A	C	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	57870121	rs486699	A	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	57870648	rs512490	A	G	1138.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	57873042	rs33927108	T	C	6713.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr12	57877823	.	CA	C	122.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.28;ReadPosRankSum=-0.842;SOR=0.525;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr12	57891804	rs537161	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	57905349	rs747340	G	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	57905687	rs1284467	A	G	4365.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr12	57911160	rs697221	G	A	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	57918634	rs1148555	A	G	7310.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	57919107	rs1148554	C	T	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	57921188	rs1284605	C	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	57922363	rs2620679	A	G	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	57926472	rs703837	G	A	7403.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	57940749	rs775325	C	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	57958313	rs775322	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	57975570	rs775247	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	57994743	rs775235	T	G	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr12	57995089	rs812873	T	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	58000378	rs703834	G	A	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	58003922	rs10437954	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	58004288	rs117150132	A	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.21;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	58004563	rs7314872	C	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	58005682	rs60586224	G	A	5490.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=0.774;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:2,224:0.99:226
chr12	58007678	rs7305391	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	58008952	rs703833	C	T	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	58013175	rs2277324	G	A	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	58015494	rs923828	G	A	3183.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	58019472	rs774895	T	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	58026001	rs2307095	G	A	8099.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr12	58089413	rs3825078	A	T	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr12	58090232	rs72303843	AGTCGG	A	1242.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.26;QD=40.09;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	58090243	.	GGGC	G	1116.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.75;QD=41.36;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	58110062	rs141328077	T	TG	264.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	58112189	rs799265	A	G	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	58124803	rs238523	C	T	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	58126234	rs17852479	C	A	8972.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr12	58127766	rs238526	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	58129052	.	AAG	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.890;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-1.458;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:99,14:0.12:113
chr12	58135659	rs238530	T	C	5129.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	58145156	rs2270777	C	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	58149446	rs1689582	C	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	58150989	rs35101706	CCA	C	2208.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	58177379	rs5798416	CT	C	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.943;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.006;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:67,34:0.34:101
chr12	58202419	rs2277326	C	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	58204283	rs2172521	T	C	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	58339649	.	G	GT	105.73	.	AC=1;AF=0.500;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr12	59197223	rs1148531	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	59199648	rs1497232	A	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	59282702	rs17533647	T	C	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	62261077	rs34255534	G	GA	1629.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:9,82:0.90:91
chr12	62696477	rs35496480	T	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	62696599	rs11174420	C	T	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	62698611	rs34411608	T	TAA	118.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.77;ReadPosRankSum=0.792;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:1,7:0.88:8
chr12	62705886	rs10431509	G	A	204.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	62706046	rs73137512	A	T	305.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	62706180	rs10431510	A	G	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	62708442	rs10877825	G	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	62715412	rs111666891	CTGTAT	C	3737.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	62717783	rs139681009	CT	C	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr12	62717976	rs11174424	G	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	62777565	rs56298756	G	T	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	62778065	rs2044846	A	G	1173.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.95;ReadPosRankSum=-2.150;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr12	62778108	rs5798639	GTTT	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.97;ReadPosRankSum=1.803;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr12	62797926	rs17717700	G	T	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	62810962	rs10459254	G	A	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	62861111	rs6581450	T	C	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	62883990	rs11393430	C	CT	832.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	62888729	rs7135893	C	T	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	62892905	rs4025987	C	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	62902420	rs7294404	C	T	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	62926398	rs7957417	G	A	6212.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr12	62928633	rs10219555	G	A	3572.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	62928747	rs11364534	TA	T	1955.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	62931846	rs147032464	ATTTGT	A	2892.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	62972210	rs5798648	G	GT	392.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr12	62986620	rs12357	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	62996647	rs35646256	C	T	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	62997180	rs10877887	T	C	257.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	63328557	rs772580	G	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	63359011	rs699595	A	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	63359549	rs372617678	ACTG	A	7483.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	63359803	.	TA	T	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=11.103;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=0.000;QD=1.97;ReadPosRankSum=-0.758;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:74,35:0.32:109
chr12	63543551	.	TTC	T	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=7.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=1.616;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr12	63543576	.	TCTCA	T	297	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=28;MQ=59.01;NF=23;NR=3;PP=297;QD=11.5384615385;SC=TCTCTCTCTCTCTCACACACA;SbPval=0.99;Source=Platypus;TC=66;TCF=45;TCR=21;TR=26;WE=63543587;WS=63543566;set=Platypus	GT:AD:AF:DP	0/1:40,26:0.39:66
chr12	63544209	rs1042615	A	G	9124.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr12	64011062	rs4105524	A	G	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	64041195	.	C	CATAATAATA	499.73	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	64055347	.	G	GA	73	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=12;HapScore=2;MGOF=10;MMLQ=16;MQ=61.34;NF=1;NR=4;PP=73;QD=15.8;SC=CTTTTTTTCTGAAAAAAAAAA;SbPval=0.48;Source=Platypus;TC=8;TCF=1;TCR=7;TR=5;WE=64055355;WS=64055337;set=Platypus	GT:AD:AF:DP	1/1:3,5:0.62:8
chr12	64061745	rs11175110	C	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	64078548	rs61935227	G	A	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.07;QD=44.29;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	64078557	rs61935228	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.22;QD=43.54;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	64078612	rs61935229	G	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	64118558	rs3864455	A	G	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.75;QD=27.01;SOR=1.288;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	64174680	rs3791156	G	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	64202890	rs1876465	C	G	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	64472803	rs789710	A	T	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	64485593	rs5798729	A	ACC	1991.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	64491002	.	G	GT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.343;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.444;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:57,24:0.30:81
chr12	64587633	rs699638	C	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	64609562	rs2335390	C	T	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	64661209	rs1657057	AT	CC	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	64669018	rs5798743	AT	A	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	64669090	rs1002392	C	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	64669270	rs10878132	C	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	64671412	rs10624687	C	CTA,CTATA	3733.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=139;set=Intersection	GT:AF:DP	1/2:0.73,0.21:131
chr12	64697635	rs10878142	T	G	221.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	64710319	rs7310610	C	G	6706.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	64712511	rs7955105	A	G	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	64712546	rs113411861	A	AGTT	7610.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	64724815	rs11392869	T	TA	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr12	64746924	rs376117595	GT	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:2,20:0.91:22
chr12	64833249	rs10878172	A	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	64838752	rs71092967	TA	T	516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=5.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.60;ReadPosRankSum=-0.095;SOR=0.237;set=HC	GT:AD:AF:DP	0/1:24,44:0.65:68
chr12	64838770	.	T	A	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=1.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=1.711;SOR=1.168;set=HC	GT:AD:AF:DP	0/1:99,23:0.19:122
chr12	64838922	rs6581565	G	T	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	64858100	rs57810028	A	AT	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,36:0.95:38
chr12	64875787	rs7486100	T	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	64891401	rs71092972	C	CT	322.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.820;QD=6.59;ReadPosRankSum=-0.337;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:19,30:0.61:49
chr12	65004316	rs3741747	T	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	65004387	rs3741748	C	T	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	65224174	rs61730726	A	G	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr12	65272437	rs17100767	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	65460368	rs3782498	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	65462429	rs72205564	ATGTGTGTGTG	A	2603.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	65477613	rs150722125	TTTC	T	1019.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.49;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	65514266	rs7301320	T	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	65604694	rs11175678	C	T	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	65609675	rs67170565	G	GT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.161;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=6.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=-2.381;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr12	65609707	rs34604927	G	GT	685.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	65633880	rs34562240	GTGAT	G	3822.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	65762703	rs57910895	AC	A	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=6.260;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=2.73;ReadPosRankSum=1.314;SOR=0.085;set=HC	GT:AD:AF:DP	0/1:61,22:0.27:83
chr12	66232173	rs60377295	CA	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=2.695;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:30,11:0.27:41
chr12	66253698	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=0.331;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	66500843	.	G	A	1295.77	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	66517828	rs2464304	T	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	66522628	rs71096072	CA	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.294;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=0.674;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chr12	66531694	rs1185629	A	G	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	66597701	rs1882200	C	T	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	66603399	rs11465955	C	T	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	66605228	rs1152888	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	66696255	rs3741605	T	C	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	66696410	rs3741604	C	T	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr12	66698438	rs2118139	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	66698461	rs2118140	A	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	66698895	rs4430553	T	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	66698954	rs1971302	C	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	66712545	rs138227394	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr12	66716345	rs68047161	CAAA	C	989.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.107;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.490;QD=26.05;ReadPosRankSum=2.591;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:4,34:0.89:38
chr12	66717692	rs7969887	T	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	66717716	rs7957877	C	T	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	66786073	rs7970076	A	G	4050.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	66786091	rs13277	G	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	66786341	rs7970771	G	A	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	66786644	rs2270594	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	66814466	rs7397861	C	G	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	66814487	rs7397862	C	A	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	66826527	rs143524823	GAAGT	G	221.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	66826555	rs6581694	A	G	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;MQ=61.78;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	66849062	rs11613371	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	66849408	rs1038923	T	C	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	66849908	rs4913434	G	A	832.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	66849926	rs4913435	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	66856667	rs4913301	G	A	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	66909389	rs12316942	C	T	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	66923462	rs56366511	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	66933149	rs10219689	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	67197686	rs12302592	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	67688718	rs7976686	G	A	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	67701103	rs812325	G	A	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	67701374	rs3736630	T	C	868.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,28:0.97:29
chr12	67703577	rs150668777	A	G	157.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	68052178	rs3741644	G	T	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	68552041	rs2234686	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.989;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.122;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chr12	68646521	rs2227491	T	C	9760.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	68688939	rs7958232	C	T	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	68707576	rs4575357	G	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	68708761	rs2306393	C	T	13838.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr12	68709892	rs17224810	C	T	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	68719216	rs2870812	G	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	68720627	rs962976	G	A	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr12	68721040	rs962977	A	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	68724951	rs3741808	G	T	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	68725582	rs1480050	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	69042454	.	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=-0.076;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:91,25:0.22:116
chr12	69096626	rs201673769	A	AT	126.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;MQRankSum=-0.000;QD=12.64;ReadPosRankSum=1.645;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr12	69113032	rs11177338	A	G	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.902;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	69119617	rs376106399	G	GT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=2.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.38;ReadPosRankSum=0.057;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr12	69158739	.	T	TA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.297;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chr12	69202164	rs937283	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	69202326	rs2870820	C	T	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	69207162	rs1470383	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	69250548	rs3741598	C	T	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	69265578	rs2228654	A	G	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	69279736	rs2701085	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	69633379	rs2305642	A	G	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	69645864	rs490872	A	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	69646914	rs2305641	G	A	1882.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	69652336	rs5798930	G	GT	1339.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.089;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.881;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.428;QD=18.61;ReadPosRankSum=0.277;SOR=1.634;set=HC	GT:AD:AF:DP	1/1:5,67:0.93:72
chr12	69653146	rs2231700	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	69667075	rs1463335	T	A	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	69744104	rs686407	C	T	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	69753595	rs622656	C	T	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	69756762	rs10784775	G	A	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=24.30;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	69759551	rs11286051	AT	A	1256.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	69978633	rs368437019	GA	G	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=3.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=1.011;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr12	69980447	.	C	CA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.226;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:25,15:0.38:40
chr12	70064146	rs17813545	T	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.873;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	70064295	rs3847772	C	T	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	70065072	rs3847773	A	G	547.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	70065126	rs200930771	CTT	C	1089.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;QD=24.77;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:5,39:0.89:44
chr12	70070942	rs710718	A	G	4352.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	70072479	rs3741755	C	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	70078172	rs710714	C	T	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	70078575	rs12425422	T	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	70091432	rs775429	T	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	70190408	rs17120917	A	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	70195293	rs10879014	T	G	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	70273303	rs1240286	C	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	70274066	rs17813773	A	G	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	70274101	rs7310544	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	70274160	rs1240287	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	70280797	rs1612447	T	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	70289063	rs7964113	A	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	70289112	rs7979309	T	C	5334.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	70289124	rs139690592	G	GT	2575.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.537;QD=16.95;ReadPosRankSum=-0.269;SOR=0.656;set=HC	GT:AD:AF:DP	1/1:15,137:0.90:152
chr12	70290875	rs10879038	T	A	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	70290921	rs10879039	C	T	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	70291047	rs10879040	T	G	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	70297317	rs10784805	A	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	70304860	rs989879	C	A	184.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	70330087	rs813147	A	G	5654.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	70352198	.	C	CT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=1.814;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr12	70747535	.	T	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.145;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=4.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=0.748;SOR=0.247;set=HC	GT:AD:AF:DP	0/1:29,28:0.49:57
chr12	70747693	rs35192504	T	TA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.534;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr12	70915347	rs369876	A	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	70928606	rs112571541	A	T	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	70928724	rs582954	A	G	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	70928745	rs3752702	G	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	70930061	rs2278346	T	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	70933687	rs919595	A	G	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr12	70938176	rs4761221	G	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	70970455	.	G	T	199.77	.	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	70990134	.	C	CA	388.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.483;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=1.615;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.97;ReadPosRankSum=1.432;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr12	71029365	.	A	AAAAC	1991.73	.	AC=2;AF=1.00;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	71029431	rs2717417	C	T	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:2,172:0.99:174
chr12	71050694	rs5798997	T	TA	411.14	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr12	71056569	rs7969289	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	71066826	.	AAAAG	A	129.87	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	71139664	rs3803036	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	71509836	rs1796329	C	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	71522953	rs1796330	G	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	71523043	rs1705263	C	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	71526414	rs2270588	T	C	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	71526593	rs2270587	G	A	3774.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr12	71526709	rs3816942	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	71947173	rs1148985	G	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	71955394	rs1280603	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	71955414	rs190886042	A	G	153.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	71960208	rs1797372	G	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	71960329	rs1797373	G	A	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	71960533	rs1797374	G	A	9247.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr12	71960584	rs1726469	T	C	9955.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr12	72004884	rs34631263	G	GA	408.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.135;QD=7.86;ReadPosRankSum=-1.152;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:21,31:0.60:52
chr12	72013832	rs1298463	A	G	2865.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	72019989	rs55719302	T	TAC	2638.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:18,90:0.83:108
chr12	72022556	rs1148996	C	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	72023336	rs56109220	T	TACAC,TACACAC	986.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.979;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=39.47;ReadPosRankSum=-0.694;SOR=1.033;set=HC	GT:AD:AF:DP	1/2:1,9,15:0.36,0.60:25
chr12	72026872	rs1011331	T	C	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	72028607	rs34399921	TA	T	228.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr12	72030252	rs1149006	T	C	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	72388374	rs1007023	G	T	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	72666485	rs74594364	A	G	1059.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=6.690;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.85;ReadPosRankSum=0.132;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr12	72666488	rs78720771	G	A	1059.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=6.690;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.85;ReadPosRankSum=0.132;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chr12	72666499	rs79761722	A	G	1497.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.283;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=8.942;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.04;ReadPosRankSum=2.518;SOR=2.717;set=HC	GT:AD:AF:DP	1/1:3,41:0.93:44
chr12	72893531	rs1444607	T	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	72935947	rs723867	G	C	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	73012649	rs111312234	CT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.699;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.311;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.132;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chr12	74932159	rs590352	G	C	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	75687185	rs7967562	G	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	75692607	rs7485576	G	A	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	75706720	rs60971359	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	75710004	rs10879900	C	T	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	75720277	.	A	G	3862.77	.	AC=2;AF=1.00;AN=2;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	75760742	rs12366348	G	A	2688.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	75784773	rs7978856	C	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	75785100	rs11180483	C	T	5691.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	75785468	rs4393363	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	75796721	rs7135440	G	T	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	75816612	rs1543946	C	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	75816814	rs144850646	G	GACA	1655.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	75874913	rs2242435	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	75875576	rs1909979	C	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	75900396	rs201846221	CA	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.669;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.10;ReadPosRankSum=1.613;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:8,19:0.70:27
chr12	75900702	rs2704766	G	A	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	76357704	rs73131445	G	C	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	76424937	rs71716769	TTGC	T	6177.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:11,153:0.93:164
chr12	76425476	rs3747549	G	A	11944.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr12	76444510	rs4831914	G	A	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	76447792	rs35076461	AT	A	700.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	76449900	rs1059143	T	C	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	76450465	rs113043714	TA	T	424.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.834;QD=3.43;ReadPosRankSum=-0.353;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:82,42:0.34:124
chr12	76451696	rs2163913	T	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	76453966	rs4663	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	76461137	rs10785227	T	C	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	76461145	rs7972289	C	T	364.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.53;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	76461257	rs3214625	T	TA	803.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.724;MLEAC=1;MLEAF=0.500;MQ=61.37;MQRankSum=0.000;QD=18.27;ReadPosRankSum=0.999;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:1,43:0.98:44
chr12	76462612	rs10880034	T	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	76762923	rs10656017	A	AAAT	357.74	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	76763092	rs11459293	G	GA	235.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=0.730;QD=12.41;ReadPosRankSum=-0.085;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr12	76767065	rs71311107	A	AT	754.70	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:8,43:0.84:51
chr12	76769209	rs7299563	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	76780051	rs72247585	T	TA	234.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.03;ReadPosRankSum=-0.706;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:9,17:0.65:26
chr12	76786349	rs4761423	G	A	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	76804195	rs77274445	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	77158419	rs1017784	T	C	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	77214788	rs2306142	G	A	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	77216330	rs10618043	AT	A	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.667;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:43,21:0.33:64
chr12	77243103	.	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=7.051;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=2.225;QD=1.72;ReadPosRankSum=-0.362;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	77253236	.	CT	C	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.149;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:40,15:0.27:55
chr12	77424135	rs10862960	C	T	4677.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.837;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	77426776	rs753266	G	A	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	77438436	rs2242384	T	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	77438607	rs2242383	T	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	77449790	rs310791	A	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	78225186	rs17195772	C	A	2515.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	78225374	rs10735309	A	G	5382.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	78391958	rs11107763	A	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	78415452	rs1382645	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	78510374	rs2694680	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	78511755	rs300442	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.567;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	78538648	rs411935	T	C	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	78562687	rs1726431	A	G	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	78569059	rs2442134	G	A	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	78571186	rs1020461	T	C	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	78571490	rs958836	T	C	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:2,257:0.99:259
chr12	78582362	rs300513	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	78582566	rs400289	A	G	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	78583652	rs185775385	T	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	78590946	rs300498	A	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	78590983	rs300497	A	G	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	79611374	rs2037743	C	T	6080.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	79611536	rs2400390	T	C	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	79747441	rs11609641	C	T	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	80014907	rs2307223	A	T	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	80169497	rs5799439	TA	T	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr12	80169697	rs369362742	CT	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.19;ReadPosRankSum=-0.158;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr12	80175764	rs2111687	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	80201271	rs34190005	TTA	T	48.70	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.35;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	80216060	rs3849223	C	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	80603406	rs4842344	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	80613570	.	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.111;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:114,33:0.22:147
chr12	80626970	rs1451105	T	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	80645734	rs11438265	A	AT	741.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	80645799	rs2100258	A	T	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=27.84;SOR=1.440;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	80648399	rs7295623	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	80649004	rs11114374	A	C	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	80649989	rs17307832	C	G	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	80655692	rs10778721	G	A	2406.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	80663825	rs11324174	GA	G	1871.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:3,72:0.96:75
chr12	80663838	rs201335759	A	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:1,93:0.99:94
chr12	80672064	rs1376384	A	G	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	80707210	rs56658695	A	T	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	80712307	rs7963215	A	C	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	80712420	rs10778725	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	80722385	rs71094975	C	CT	1139.74	.	AC=2;AF=1.00;AN=2;DB;DP=74;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:11,62:0.85:73
chr12	80726708	rs1451101	A	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	80733078	.	GTT	G	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.923;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:8,20:0.71:28
chr12	80746234	rs147703967	G	GAAT	2800.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	80752174	rs146138915	G	GT	993.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	80760291	.	TTA	T	50.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:24,5:0.17:29
chr12	80838012	rs10746166	T	C	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	80838354	rs112125750	T	TATATG	219.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	80840771	rs7311270	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	80842026	rs10047551	A	G	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	80848925	rs7979859	T	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	80849063	rs7980018	T	C	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	80849328	rs4482094	G	A	1517.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	80852758	rs10862125	C	T	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	80852925	rs59973438	A	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	80853424	rs4439581	T	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	80853649	rs11837911	G	A	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	80854003	rs117029569	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	80855597	rs4499068	T	C	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	80855818	rs7976388	A	C	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=42.84;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	80855825	rs60342585	C	T	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=44.37;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	80855856	rs4448754	G	A	2156.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	80862239	rs75832109	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	80878174	rs7311413	T	A	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	80878181	rs56351124	C	CT	2487.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	80889165	rs145970310	T	TTTG	1307.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	80889829	rs10778752	T	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	80890325	rs56929349	T	TG	3808.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;MQ=60.33;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	80899901	rs11114486	C	A	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	80900397	rs12824064	C	G	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	80933465	rs2222752	G	A	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	80935300	rs11114502	A	T	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	81009858	rs3994957	TTA	T	222.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	81009921	rs73150758	T	C	568.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,24:0.92:26
chr12	81205198	rs138290894	GTA	G	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-1.598;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr12	81239721	.	GA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.182;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.251;QD=2.61;ReadPosRankSum=-0.320;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr12	81624964	rs2293651	A	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	81647065	rs2895868	G	A	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	81647471	rs2400895	T	A	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	81655861	rs2272501	G	C	3954.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr12	81660963	rs35647579	C	CA	678.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.21;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	81661039	rs12826016	G	A	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	81661903	.	T	TTTTC	661.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.895;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=7.447;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=2.477;QD=14.08;ReadPosRankSum=-3.606;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr12	81661945	rs6539566	A	T	273.78	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	81688958	rs1882188	C	G	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	81695836	rs10862288	G	A	192.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	81696399	rs1921053	G	A	3784.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	81696487	rs1921052	G	A	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	82617279	rs7304928	G	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	82751955	rs6539662	A	G	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	82752080	rs61737397	C	T	12146.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr12	82752633	rs4882530	G	A	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	82783668	rs10778908	C	T	2112.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	82792787	rs4296098	C	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	82792949	rs34765930	G	A	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	82828426	rs10683876	T	TATAAG	2572.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	82832418	rs2717448	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	82850427	rs2731290	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	83324499	rs10746259	G	T	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	83358930	rs2403023	A	G	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	83424455	rs11115554	A	T	582.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.791;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.522;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=-0.207;SOR=2.066;set=HC	GT:AD:AF:DP	1/1:4,29:0.88:33
chr12	85261005	rs79714331	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	85277561	rs17183577	T	A	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr12	85277608	rs17183612	C	T	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	85285920	rs36111430	T	TA	570.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.464;QD=14.27;ReadPosRankSum=-0.083;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:4,36:0.90:40
chr12	85440932	rs144982007	AAAAAAAATT	A	502.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	85449465	rs7974418	T	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	85451017	rs6539881	G	C	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	85531790	rs168615	A	G	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	85547749	rs60165614	G	A	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	85556602	rs7971976	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	86229843	rs1349061	C	T	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	86268015	rs2234762	C	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	86270609	rs112838319	G	GA	572.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr12	86270629	rs35124959	GT	G	896.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	86272378	rs58553548	A	T	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	88379566	rs10858676	A	G	313.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	88453608	rs2471512	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	88454594	rs11405846	T	TA	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr12	88473049	rs2468245	C	T	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	88478316	rs11356711	TA	T	405.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	88483272	rs10717563	TA	T	2949.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	88496838	rs2471532	C	G	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	88505078	rs2468255	T	C	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	88522823	rs71082425	A	AC	3185.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	88522936	rs79458642	C	CTTA	581.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	88547277	rs2468230	T	C	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	88900246	rs10506953	G	T	202.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	88910307	rs2291557	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	88926072	rs4842477	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	88926290	rs11428619	C	CA	786.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:4,43:0.91:47
chr12	89743223	rs704075	G	A	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	89853408	rs4842658	G	A	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.19;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	89853694	rs7953615	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	89861265	rs9308287	C	G	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	89861529	rs10506972	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	89864432	rs10777167	T	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	89865545	rs10665702	C	CTTT	661.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.010;MLEAC=2;MLEAF=1.000;MQ=61.70;MQRankSum=0.879;QD=25.45;ReadPosRankSum=0.353;SOR=0.165;set=HC	GT:AD:AF:DP	1/1:2,24:0.92:26
chr12	89885923	rs6538189	C	A	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	89885942	rs6538190	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	89917518	rs2230281	A	G	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr12	89918677	rs11105310	C	A	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	89919630	rs67346689	ACC	A	1062.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	90015579	rs35089871	C	CA	590.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.554;QD=13.43;ReadPosRankSum=-0.576;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr12	90024549	.	A	AATATATAAATAT	500.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=41.73;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	91334194	rs4520662	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	91340252	.	C	CT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.829;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr12	91449990	rs2735333	C	T	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	91550784	rs60125162	AT	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.202;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr12	92539344	rs709223	T	C	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	92818786	rs1515565	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	92821860	rs11284604	CT	C	6009.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	93155419	rs145042614	A	G	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=22.49;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	93155535	rs1504907	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	93171278	rs4760496	T	G	6013.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr12	93202726	rs61933720	G	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	93203036	rs111613660	C	CAA	270.87	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,11:0.92:12
chr12	93206878	rs3925797	G	A	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	93226666	rs7296923	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	93236402	rs7300619	C	T	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.68;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	93258665	rs17194451	A	G	8691.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr12	93258808	rs61935280	T	C	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	93289284	rs56326442	GA	G	599.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.392;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.76;ReadPosRankSum=-0.105;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:5,42:0.89:47
chr12	93609340	rs7305552	A	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	93721949	rs11380531	A	AC	646.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	93788674	rs11107010	G	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	93862989	rs4761720	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.47;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	93863162	rs4761721	C	G	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	93863170	rs4761722	C	G	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.76;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	93864474	rs1552861	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	93873089	rs34328828	C	CA	148.90	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.766;SOR=0.368;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr12	93881574	rs139138639	C	CT	266.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	93894779	rs6538424	A	T	155.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	93894823	rs6538425	G	C	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	93897779	rs35963955	C	CT	854.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.316;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:3,43:0.93:46
chr12	93898249	rs7971966	A	G	379.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.74;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	93967035	rs930316	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	93968353	rs148353066	C	CT	84.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	93968378	rs35259505	CT	C	93.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	94253033	rs10859603	T	A	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	94562802	rs2361358	G	A	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	94562875	rs2361359	C	G	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.384;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr12	94563134	rs3214968	A	AT	1500.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.53;QD=23.45;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	94575157	rs3794220	C	T	106.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	94603249	rs2610671	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	94603300	rs2305971	C	T	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.81;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	94620264	.	AT	A	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=2.073;SOR=1.200;set=HC	GT:AD:AF:DP	0/1:31,16:0.34:47
chr12	94637557	rs864106	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	94645255	rs2230757	A	G	6083.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	94648493	rs7980141	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	94649103	rs865569	T	C	5247.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	94653227	rs2306664	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	94671565	rs832507	A	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	94671743	rs832506	G	C	4711.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	94671922	rs11341959	CA	C	7499.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr12	94673509	rs10713724	GC	G	4685.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	94688232	rs1880934	C	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	94697508	rs201354613	CT	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=6.194;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.246;QD=4.35;ReadPosRankSum=-0.764;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:29,31:0.52:60
chr12	94697525	rs1057977	T	C	2418.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.124;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;MQRankSum=0.289;QD=28.46;ReadPosRankSum=-0.596;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:2,83:0.98:85
chr12	94698880	rs3803071	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	94769758	rs4761611	A	G	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	94769945	rs10507037	A	G	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr12	94955644	rs12307230	G	T	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	94972290	rs2270893	C	T	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	94975799	rs3747553	G	A	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr12	94976084	rs3747552	T	C	4284.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	94976159	rs3747551	T	C	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr12	94976383	rs3747550	T	A	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	95044161	rs1274523	A	C	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	95228007	rs2289031	T	G	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	95321792	rs73368737	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	95390595	rs10654978	C	CAA	421.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.09;ReadPosRankSum=0.323;SOR=0.197;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr12	95390810	rs7973115	G	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	95396669	rs6538588	A	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	95498747	rs11331948	GA	G	828.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.626;QD=8.54;ReadPosRankSum=2.396;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:30,67:0.69:97
chr12	95500635	rs61938198	A	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	95500700	rs10694512	A	AAACAAAAC	5349.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.10;QD=49.08;SOR=1.365;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	95500727	rs7138545	C	G	7320.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	95501359	.	G	C	5318.77	.	AC=2;AF=1.00;AN=2;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	95510811	rs6419371	T	G	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	95637137	rs34891631	CA	C	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.687;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.977;QD=3.53;ReadPosRankSum=0.204;SOR=1.318;set=HC	GT:AD:AF:DP	0/1:55,50:0.48:105
chr12	95639261	rs7979908	G	A	2840.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	95651888	rs6538624	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	95771236	rs2727663	T	C	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	95966944	rs4762567	A	G	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	96077312	rs17851048	C	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	96184102	rs11108265	G	A	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	96253003	rs66876037	A	AG	422.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	96260947	rs7960706	A	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	96263437	rs10735335	G	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	96263437	.	GAC	AAA	487	.	AC=2;AF=1.00;AN=2;BRF=0.03;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=4;NR=18;PP=487;QD=24.5667215846;SC=TGAGCCATGTGACTAGAAGAC;SbPval=0.54;Source=Platypus;TC=23;TCF=4;TCR=19;TR=22;WE=96263447;WS=96263427;set=Platypus	GT:AD:AF:DP	1/1:1,22:0.96:23
chr12	96263439	rs10735336	C	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.12;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	96284650	rs6538681	A	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	96361514	rs56676973	G	GT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=0.208;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chr12	96377911	rs139751247	A	ATACTATGTTCAT	457.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	96379806	rs3213737	G	A	5337.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	96387621	rs2302629	A	G	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	96387829	rs17677007	A	G	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr12	96397850	rs11374431	T	TA	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	96399986	rs5020450	T	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	96414451	rs17677715	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	96415842	rs2540493	A	C	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	96653501	rs4762144	C	T	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	96676188	rs71460338	T	G	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr12	96677225	rs66560167	GTT	G	434.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;QD=24.15;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	96688732	rs11835965	C	T	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	96694162	rs10777781	G	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.41;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	96704740	rs35036804	G	A	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr12	96704958	.	T	TA	174.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=0.862;SOR=1.300;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr12	96704979	rs3759366	C	A	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	96718008	rs35383509	T	C	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	96883245	rs3825265	G	C	280.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	96912598	rs11108564	G	A	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	96948405	rs11832238	G	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	96988037	rs815896	C	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	96992404	rs141243872	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	96992494	rs815890	C	T	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr12	97020673	rs10507074	T	C	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	97024016	rs35205059	TG	T	121	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	97045672	rs11314540	GT	G	66.87	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	97051632	rs10710617	AT	A	236.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	97093670	rs74519651	A	G	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	97306603	.	AT	A	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.010;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:39,18:0.32:57
chr12	97311376	rs11333833	CT	C	434.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,30:0.91:33
chr12	97311541	rs4762339	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	97328714	rs1610921	TGCTTATAA	T	2573.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	97331219	rs67367047	GT	G	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=22.72;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	97337199	rs249579	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	97338696	rs249585	G	A	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	97339388	rs249589	G	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	97345955	rs2304697	A	G	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	97639049	rs1012314	T	C	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	98332667	rs1349300	C	A	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	98332704	rs1349299	C	G	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	98332904	rs3072891	TCA	T	2883.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	98880901	rs36109874	TA	T	521.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.119;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.474;QD=10.87;ReadPosRankSum=1.134;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:8,40:0.83:48
chr12	98881064	rs34027469	TA	T	48.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.75;ReadPosRankSum=-0.361;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr12	98896502	rs3825263	G	A	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:1,40:0.98:41
chr12	98897361	rs56397627	C	G	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.39;SOR=2.336;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	98897364	rs56118269	C	T	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=2.334;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr12	98985056	rs934930	T	C	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr12	99056125	rs10745833	T	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	99119340	rs2304006	G	A	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	99129497	rs10860361	G	A	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	99129541	rs7300187	G	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	99175091	.	AAC	A	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.107;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:126,25:0.17:151
chr12	99478889	rs7970088	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	100478156	rs71088170	TCACA	T,TCA	898.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=28.99;SOR=2.093;set=HC	GT:AD:AF:DP	1/2:0,11,20:0.35,0.65:31
chr12	100635627	.	G	GA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=1.396;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr12	100787095	rs1998925	T	C	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	100795699	rs11568544	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	100795794	rs11110366	A	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.71;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	100806503	rs11568536	C	T	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	100811727	rs11110371	C	T	2241.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	100813487	rs7967828	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	100813976	rs11568537	A	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	101012490	rs7961640	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	101017445	rs1469385	T	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr12	101018014	rs1045602	T	C	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr12	101433990	rs665071	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	101473109	rs34514121	AC	A	7246.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:3,250:0.99:253
chr12	101473272	rs651784	G	A	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	101493286	rs140039723	C	T	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	101510371	rs349661	T	G	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	101683929	rs703715	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	101750814	rs10082778	T	A	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	101870804	rs7979430	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	101873596	rs10683589	C	CT	375.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=1.069;QD=9.17;ReadPosRankSum=0.330;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr12	102008103	.	TGA	T	48	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=3;MGOF=7;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=48;QD=17.6666666667;SC=TGTGTGTGTGTGAGAGAGAGA;SbPval=1.0;Source=Platypus;TC=11;TCF=4;TCR=7;TR=3;WE=102008112;WS=102008093;set=Platypus	GT:AD:AF:DP	1/0:8,3:0.27:11
chr12	102023391	rs201965296	CTGTAATCCCAGCACTCT	CGTAATCCCAGCACTCT,C	1076.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=25;set=Intersection	GT:AF:DP	1/1:1.00:24
chr12	102023394	.	TAATCCCAGCACTCTGG	T	1074.73	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.34;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	102041757	rs17031746	A	G	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	102041967	rs3834936	C	CA	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	102044912	rs825046	C	T	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	102046303	.	CCT	C	99.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr12	102046595	rs1997204	T	C	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	102060672	.	T	TAC	106.73	.	AC=1;AF=0.500;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr12	102063901	.	C	CCACA	737.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=4.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.08;ReadPosRankSum=0.262;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:5,18:0.78:23
chr12	102064118	rs7139095	T	C	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr12	102074442	rs2303631	A	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	102076479	rs35621105	C	T	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	102078094	rs2303629	G	C	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	102079418	rs2764	G	A	3418.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	102131090	rs11306325	TA	T	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.930;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=0.319;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr12	102433811	rs4237982	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	102444064	rs7958593	C	T	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	102455729	rs3751129	G	A	8877.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr12	102514184	rs4764863	A	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	102517804	rs2036771	G	A	6385.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.17;ReadPosRankSum=-0.697;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:2,242:0.99:244
chr12	102528016	rs56265035	C	CAA	104.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.97;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	102545563	rs55772007	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	102548700	rs2102476	G	T	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	102559708	rs3794201	A	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	102576307	rs35297380	C	CT	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.297;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.01;ReadPosRankSum=-1.646;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,51:0.80:64
chr12	102589619	rs147960534	T	TTAAAAA	322.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	102589675	rs17438988	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	102595249	.	G	GAAA	96	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=20;HapScore=2;MGOF=5;MMLQ=15;MQ=54.91;NF=2;NR=0;PP=96;QD=49.5;SC=ACTCTGTCTGGAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=2;WE=102595257;WS=102595239;set=Platypus	GT:AD:AF:DP	1/1:1,2:0.67:3
chr12	102872155	rs67214112	C	CT	544.74	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:3,28:0.90:31
chr12	103298517	rs1522307	A	G	7198.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	103307583	rs3805122	A	G	5423.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	103310715	rs1522295	T	C	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	103310787	rs1522296	G	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	103310979	rs2280615	T	G	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	103352171	rs369257660	CGCA	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=4.877;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.347;QD=0.26;ReadPosRankSum=-2.023;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:110,10:0.08:120
chr12	103762095	.	TCA	T	72	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=25;MQ=60.0;NF=0;NR=3;PP=72;QD=25.0;SC=TCTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=3;WE=103762104;WS=103762085;set=Platypus	GT:AD:AF:DP	0/1:5,3:0.38:8
chr12	103988117	rs703596	C	A	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	103988311	rs703597	T	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	104015999	rs703612	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	104025219	rs10668571	T	TAA	394.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.78;ReadPosRankSum=1.095;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:2,17:0.89:19
chr12	104042736	rs697199	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	104048592	rs831425	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	104069836	.	CTT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.086;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=7.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.735;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr12	104077109	.	T	TA	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=-0.195;SOR=0.394;set=HC	GT:AD:AF:DP	0/1:26,16:0.38:42
chr12	104099544	rs11111718	C	A	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.133;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	104100617	rs697212	C	T	9321.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr12	104111687	rs703653	C	A	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	104124061	rs4981042	A	G	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	104131352	rs147914018	T	TTC	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-0.525;QD=21.25;ReadPosRankSum=-1.737;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:3,16:0.84:19
chr12	104131384	.	CTTT	C	963.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;MQRankSum=0.456;QD=28.35;ReadPosRankSum=-0.408;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr12	104133305	rs35471201	CTGTG	C	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.99;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	104138918	rs2292687	C	T	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	104140517	rs2056128	A	G	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	104147207	rs3751198	A	G	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	104149022	rs11111748	G	A	10718.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr12	104149251	rs7296626	C	T	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr12	104152856	rs3817303	G	T	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	104153004	rs2271637	C	G	4497.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr12	104159667	rs11111755	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=61.34;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	104159716	rs10861094	C	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	104171941	.	CTTT	C	256.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.17;ReadPosRankSum=0.072;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:10,18:0.64:28
chr12	104171946	.	T	A	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.525;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.56;ReadPosRankSum=-0.024;SOR=1.284;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	104171947	rs60237513	T	A	43.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.298;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr12	104171948	.	T	TAAAA	1627.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=46.51;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	104174192	rs1866292	C	T	4264.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.031;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	104179271	rs11111771	G	A	7246.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr12	104179529	.	TAAAAAAAAAAAAAA	T,TA	2122.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=8.003;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=37.91;ReadPosRankSum=2.404;SOR=0.982;set=HC	GT:AD:AF:DP	1/2:2,19,35:0.34,0.62:56
chr12	104181420	rs4964823	A	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	104182458	rs2888792	T	C	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	104186946	rs1866295	G	T	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	104187092	rs1866296	G	A	11500.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr12	104187440	rs11111781	C	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	104190523	rs12425205	G	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	104190854	rs73192052	CA	TG	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	104235229	rs34187551	C	G	4785.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=27.50;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	104235308	rs116314589	C	G	11006.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr12	104237512	rs1370784	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	104237829	rs1370780	T	G	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	104254753	rs11111816	G	A	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	104254932	rs11111817	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	104309428	rs7295489	G	C	6214.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	104324148	rs2722187	G	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	104324182	rs2070908	C	G	1726.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.85;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	104325459	rs17034931	G	C	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr12	104325649	rs2722188	T	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	104335750	rs58392270	TAA	T	5110.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	104359931	rs4135039	T	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	104359982	rs4135040	C	A	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	104366864	rs10627502	A	ATTTTTTTT	1236.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=35.34;ReadPosRankSum=0.218;SOR=1.793;set=HC	GT:AD:AF:DP	1/1:1,34:0.97:35
chr12	104373600	rs3751209	G	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	104378762	rs35589874	C	CAT	1521.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	104378826	rs4135122	C	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	104391473	rs4964435	G	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	104408955	rs73177961	T	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	104459811	rs34011860	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	104459905	rs35879815	T	G	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	104461937	rs6539123	C	T	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	104476192	.	T	G	1058.77	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	104482010	rs3763999	T	A	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	104489120	rs2272477	T	C	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	104496724	rs35223676	C	T	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:1,58:0.98:59
chr12	104515108	rs115044997	G	A	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	104618454	rs6539128	A	G	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	104645363	rs7960443	G	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	104645405	rs7975161	T	C	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	104703836	rs7134193	A	G	8643.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr12	104703957	rs35882028	T	A	1791.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=3.003;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	104703957	.	TCT	AGA	1689	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=9;MMLQ=28;MQ=60.0;NF=5;NR=18;PP=1689;QD=76.1942554288;SC=GGAGTCTCACTCTGTGAGACT;SbPval=0.49;Source=Platypus;TC=25;TCF=5;TCR=20;TR=23;WE=104703980;WS=104703947;set=Platypus	GT:AD:AF:DP	1/1:2,23:0.92:25
chr12	104703958	rs34794131	C	G	1791.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.94;SOR=2.891;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	104703959	rs34873076	T	A	1836.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.34;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	104703965	rs66665385	ACTCCCAGG	A	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	104707180	rs6539137	A	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	104709559	rs4964287	C	T	4686.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	104714847	.	CT	C	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.895;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:92,33:0.26:125
chr12	104718959	rs10861201	C	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	104741958	rs11112003	C	T	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	104851463	rs35676334	C	G	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	105260159	rs201865798	TACACACAC	T,TAC	1428.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=38;set=Intersection	GT:AF:DP	1/2:0.36,0.64:36
chr12	105260365	rs61036188	TAA	T,TA	722.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.302;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.502;QD=11.47;ReadPosRankSum=0.317;SOR=0.422;set=HC	GT:AD:AF:DP	1/2:11,25,27:0.40,0.43:63
chr12	105380152	rs1129593	A	C	6692.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr12	105380311	rs7964906	T	C	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	105431835	rs10861315	T	G	3428.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	105432040	rs11112328	A	T	501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=4.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.36;ReadPosRankSum=0.271;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr12	105432040	.	ACA	TCA,TCT	1091	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.24;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=11;MMLQ=28;MQ=57.69;NF=17,12;NR=33,25;PP=213,1091;QD=4.95542425094;SC=TCTCTCTCTCACACACACACA;SbPval=0.39;Source=Platypus;TC=62;TCF=19;TCR=43;TR=50,37;WE=105432085;WS=105432030;set=Platypus	GT:AF:DP	0/1:0.81:62
chr12	105432042	rs73179912	A	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=1.647;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr12	105432045	.	CACACACACACAA	C	77.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr12	105432047	.	CACACACACAA	C	90.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.823;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.503;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr12	105432075	rs188231679	C	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.32;ReadPosRankSum=-0.302;SOR=3.383;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr12	105432077	.	C	A	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.134;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:15,6:0.29:21
chr12	105433463	rs4964120	C	T	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	105433523	rs4964317	T	A	7889.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr12	105433607	rs4964318	G	A	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr12	105433702	rs7315784	A	T	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	105434467	rs11112330	C	T	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	105434533	rs10861316	C	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	105440421	rs10861324	T	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	105454605	rs35427764	G	GA	115.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.228;QD=6.09;ReadPosRankSum=0.819;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,13:0.68:19
chr12	105454863	rs71468237	G	A	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	105455651	rs6539183	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	105477951	rs11112362	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	105478327	rs7303961	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	105504764	rs1196839	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	105509160	rs1196801	G	T	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	105527385	rs1211276	G	C	172.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	105534025	rs1196808	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	105534573	rs1014502	A	G	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	105536430	rs5800652	C	CTA	86.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.51;QD=28.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	105538270	rs370837338	CT	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.006;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.373;QD=3.64;ReadPosRankSum=-2.160;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:30,27:0.47:57
chr12	105540322	rs199922129	A	AT	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.830;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.475;QD=1.35;ReadPosRankSum=0.714;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr12	105541046	rs3215374	AT	A	750.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	105541201	rs3830657	ATG	A	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	105543326	rs1196802	T	G	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	105546172	rs1663564	G	A	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	105556485	rs1373552	T	G	222.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.25;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr12	105568122	rs935241	G	A	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	105568176	rs935240	G	A	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	105582245	rs1196852	A	G	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	105583877	rs2272495	G	A	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr12	105597680	rs3736628	C	T	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	105600935	rs2293643	G	A	3753.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	105611333	rs4964342	T	C	3006.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	105623073	rs2293644	C	T	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	105629865	rs1196785	C	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	106532072	rs1215597	C	A	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	106633569	rs3088113	C	T	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	106641489	rs368519473	GGGC	G	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=41.65;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	106647783	rs2704898	T	G	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	106647842	rs12231439	C	T	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	106704974	rs4964460	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	106706035	.	ATTT	A	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=-0.846;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr12	106708278	rs2253838	T	G	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	106708352	.	TGTGAGAGAGA	T	383	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=4;MGOF=27;MMLQ=27;MQ=53.5;NF=0;NR=10;PP=383;QD=38.6;SC=TGTGTGTGTGTGTGAGAGAGA;SbPval=1.0;Source=Platypus;TC=19;TCF=0;TCR=19;TR=10;WE=106708369;WS=106708340;set=Platypus	GT:AD:AF:DP	1/0:9,10:0.53:19
chr12	106717224	rs12424952	C	A	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	106717490	rs200010594	TTTAAA	T	821.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=5.994;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	106723190	rs11112940	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	106751805	rs61943670	G	A	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	106763013	rs7134881	C	T	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	106763268	rs7135054	A	G	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	106773676	rs7310703	A	C	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	106820957	.	C	CT	605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.319;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.688;QD=9.77;ReadPosRankSum=-0.466;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr12	106831283	rs11112993	G	A	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	106890059	rs721438	C	T	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	106890135	rs2288270	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	106893863	rs7137638	G	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	106893930	rs7137444	A	T	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	107002558	.	C	CT	530.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.977;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=0.510;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:39,41:0.51:80
chr12	107395106	rs8192440	A	G	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr12	107398862	.	TA	T	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.744;QD=1.53;ReadPosRankSum=1.704;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr12	107713511	rs961498	G	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	107713696	rs111260184	G	A	4501.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	107714310	rs11383016	T	TC	1408.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	108003911	rs4964599	T	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	108600237	rs1106752	A	G	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	108618630	rs3764002	C	T	5946.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr12	108913292	.	G	GA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=0.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.070;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:120,24:0.17:144
chr12	108913377	rs5800830	GT	G	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=0.087;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:13,12:0.48:25
chr12	108913381	rs28369348	T	A	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.554;SOR=0.200;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	108917520	rs34982944	G	GA	729.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	108918146	rs2303633	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	108918330	rs2303632	G	T	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	108919390	rs7963063	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	108923950	rs1549096	A	G	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr12	108924904	rs2287549	C	T	6227.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr12	108932053	rs2287551	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	108932916	rs7133076	C	T	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	108936516	rs888556	T	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.95;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	108936519	rs888557	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.28;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	108943028	rs2052423	G	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	108954502	rs1160332	G	A	1829.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	108954823	rs1063936	C	T	13687.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr12	108956357	rs2287554	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	108956417	rs10778647	TT	GG	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	108956433	rs2287555	C	T	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	108956526	rs60547936	A	AG	3934.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	108956610	rs2287556	C	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr12	108960906	rs10861945	G	T	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	108961293	rs888546	C	T	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	108961354	rs888547	T	C	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	108961383	rs888548	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	109025432	rs8179115	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	109182653	rs151176410	G	A	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	109194449	rs3217206	TC	T	216.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	109217119	.	G	A	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-0.196;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:36,22:0.38:58
chr12	109277492	rs11114083	C	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	109278747	rs2111902	T	G	8355.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr12	109281310	rs7980427	G	A	4698.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.579;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.92;ReadPosRankSum=1.615;SOR=0.294;set=HC	GT:AD:AF:DP	1/1:1,204:1.00:205
chr12	109288202	rs75607844	A	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	109293109	rs11420034	G	GA	4542.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:12,211:0.95:223
chr12	109293320	rs3918347	A	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	109309762	rs11834711	T	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	109331162	rs3918305	C	T	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr12	109490426	rs140371213	C	CCGGCGG	2321.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:5,95:0.95:100
chr12	109505454	rs117705396	G	A	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	109510086	rs111762860	G	GT	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.813;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-0.443;SOR=1.000;set=HC	GT:AD:AF:DP	0/1:122,36:0.23:158
chr12	109511144	rs7967182	T	C	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	109511256	rs7967322	T	C	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	109530278	rs145676752	G	GCA	4557.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:19,148:0.89:167
chr12	109547586	rs2878959	A	T	2315.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.521;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.87;ReadPosRankSum=0.328;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:3,94:0.97:97
chr12	109577735	rs2878960	C	T	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr12	109605898	rs34285	C	T	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	109617865	rs11065772	T	C	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	109625976	rs373209583	CTCCT	C	1153.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=41.20;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	109629457	rs7135947	C	T	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	109635031	rs2268393	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	109635076	rs2268392	T	C	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	109637188	rs7299171	G	C	5529.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	109644447	rs12818490	G	A	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	109650546	rs2300454	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	109658070	rs2300452	G	A	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr12	109670468	rs3742027	T	C	11363.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr12	109675029	rs2241220	T	C	6987.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	109683575	rs10744772	A	G	2375.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	109685330	rs4766587	G	A	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	109685545	rs2284689	A	G	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	109691991	rs2075259	A	G	10726.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	109694230	rs10849967	T	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	109695891	rs11066004	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	109696838	rs2075260	G	A	13647.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr12	109697796	rs2075261	A	G	3202.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	109701959	rs35795929	CA	C	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.050;MLEAC=1;MLEAF=0.500;MQ=60.84;MQRankSum=1.617;QD=11.15;ReadPosRankSum=-0.317;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:20,101:0.83:121
chr12	109724565	.	GGGGCA	G	2185.73	.	AC=2;AF=1.00;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	109826634	rs11611277	C	A	4554.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	109831344	.	T	TCATCCAACCATTCATCCATCCATCCATC	760	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=68.24;NF=1;NR=51;PP=760;QD=14.7307692308;SC=GTCCATCCATTCATCCATCCA;SbPval=0.81;Source=Platypus;TC=61;TCF=2;TCR=59;TR=52;WE=109831364;WS=109831333;set=Platypus	GT:AD:AF:DP	1/1:9,52:0.85:61
chr12	109831348	.	C	CCAACCATT	1046.73	.	AC=2;AF=1.00;AN=2;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.48;QD=43.61;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	109831356	.	C	T	494	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=63.89;NF=1;NR=19;PP=494;QD=26.4385606274;SC=ATCCATCCATCCATCCATCCA;SbPval=0.62;Source=Platypus;TC=21;TCF=1;TCR=20;TR=20;WE=109831364;WS=109831333;set=Platypus	GT:AD:AF:DP	1/1:1,20:0.95:21
chr12	109831356	.	C	CCATCCATCCATCCATCCATT	1038.73	.	AC=2;AF=1.00;AN=2;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=68.01;QD=43.28;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	109835590	rs11611358	A	G	8844.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	109843594	rs9888353	G	A	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	109844432	rs11066505	A	G	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	109844702	rs12425103	C	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	109845778	rs75978659	C	CATT	7681.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	109848000	rs7967632	C	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	109848567	rs7315991	T	C	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	109849535	rs2196612	A	G	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=44.41;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	109849540	rs7316486	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=38.74;SOR=2.964;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	109849552	rs5800859	C	CCT	2091.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	109853306	rs4766598	A	G	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	109853462	rs4766471	G	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	109859032	rs5800861	G	GC	279.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	109863721	rs67083809	TTC	T	3130.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	109874230	rs2075432	A	G	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr12	109883254	rs3742020	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	109883374	rs3825393	T	C	2619.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=1.029;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr12	109883577	rs7969719	C	T	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	109889704	rs11282253	A	AATCAGG	1824.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	109893797	rs2302707	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	109894028	rs2302706	A	G	12459.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr12	109895636	rs4766605	C	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	109895958	rs11609019	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	109896002	rs12822891	A	G	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	109907303	rs7969313	A	G	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	109907670	rs12819658	A	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	109924385	.	CAAA	C	346.73	.	AC=2;AF=1.00;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.89;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	109926207	rs34306729	A	G	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	109928013	rs7976796	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	109935894	rs2270361	G	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	109936211	rs56244055	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	109937534	rs7298565	G	A	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	109945203	rs11611012	G	A	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	109949134	rs3742018	C	T	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	109955708	rs10850308	A	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr12	109994870	rs9593	A	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	109995097	rs888192	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	109999048	rs12309115	C	T	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr12	110002819	rs10850380	A	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	110004960	rs874170	C	T	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	110006512	rs11836136	A	G	6109.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	110011229	rs10774774	GC	TT	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	110012467	rs3759387	G	T	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	110012510	rs66616264	C	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	110013879	rs7957619	G	A	8968.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr12	110014055	rs3752662	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	110016946	rs201758612	T	TA	30.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=3.307;SOR=1.571;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr12	110016947	rs7296044	T	A	135.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-2.536;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr12	110231717	rs10850750	C	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=3.325;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	110293678	rs3782893	G	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	110295897	rs73202468	A	C	1946.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	110296095	rs4766488	G	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	110340852	rs11539159	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	110341933	rs10774978	A	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	110346787	rs1567471	T	A	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	110403264	rs10851035	C	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	110418635	rs7960775	A	G	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	110426653	.	CAAA	C	98.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.11;ReadPosRankSum=-0.366;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr12	110434141	rs7314485	G	A	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr12	110451125	rs12300179	A	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	110456175	rs2302689	A	G	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	110486272	rs7137233	T	C	4894.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	110489208	rs11064860	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	110495171	rs41436646	C	G	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	110503770	rs11829777	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr12	110511136	rs73205062	G	C	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	110572913	rs56076213	G	A	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	110573340	rs12300649	G	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	110618512	rs7299230	A	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	110778383	rs11065631	A	G	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	110824112	rs56130410	C	T	7949.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:1,299:1.00:300
chr12	110826208	rs28569834	TC	GG	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	110826463	rs28670753	C	T	2282.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	110834030	.	C	CA	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=5.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.29;ReadPosRankSum=1.107;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chr12	110905869	rs7958683	G	A	20819.77	.	AC=2;AF=1.00;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	1/1:0,780:1.00:780
chr12	110906880	rs7963504	C	A	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	110911024	.	C	CT	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=0.256;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr12	110931054	rs56017652	C	T	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	110939421	rs6606687	T	C	11023.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr12	110946121	rs73191828	G	A	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	110950775	.	AT	A	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=0.321;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:30,17:0.36:47
chr12	110956370	rs56379265	G	A	183.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	110968180	rs149557420	TAATG	T	1802.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	111054059	rs112976446	AT	A	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.421;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.417;QD=2.55;ReadPosRankSum=0.624;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr12	111099721	rs73191857	C	T	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	111100040	rs112306425	GA	G	380.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	111100627	rs73194012	T	C	9268.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr12	111100677	rs73194013	T	C	4582.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	111121119	rs1018134	G	A	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	111160003	rs1973505	G	A	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr12	111290871	rs886132	G	C	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	111296332	rs4766432	T	C	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	111375170	rs1056618	A	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=0.994;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	111375170	.	AGC	GGT	1332	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=15;MQ=60.0;NF=20;NR=19;PP=1332;QD=35.5248173042;SC=TCCCCCGCCAAGCCTGCCAGA;SbPval=0.5;Source=Platypus;TC=40;TCF=21;TCR=19;TR=39;WE=111375180;WS=111375160;set=Platypus	GT:AD:AF:DP	1/1:1,39:0.97:40
chr12	111375172	rs1056620	C	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.62;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	111786082	rs6490073	G	C	9869.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr12	111800258	rs3809272	G	A	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	111884608	rs3184504	T	C	9302.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr12	112036753	rs10560189	GGCT	G	6781.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	112036797	rs4098854	C	T	6337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=2.721;QD=32.34;ReadPosRankSum=0.934;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:15,181:0.92:196
chr12	112036929	rs695872	G	A	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	112037000	rs695871	G	C	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	112213665	.	GC	G	900.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	112306512	.	CT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=2.116;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:42,16:0.28:58
chr12	112403565	rs59183823	TA	T	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=1.986;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr12	112515954	.	G	GA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.650;QD=1.61;ReadPosRankSum=-0.668;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr12	112579878	.	G	GT	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.208;QD=0.37;ReadPosRankSum=-0.624;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:82,16:0.16:98
chr12	112638688	rs3835014	CGTGT	C,CGT	2446.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.268;QD=29.84;ReadPosRankSum=-0.090;SOR=0.818;set=HC	GT:AD:AF:DP	1/2:1,25,56:0.30,0.68:82
chr12	112647772	rs11611847	T	C	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	112657406	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.848;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.796;QD=0.77;ReadPosRankSum=-0.751;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr12	112685781	.	TAC	T	223.73	.	AC=1;AF=0.500;AN=2;DP=53;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr12	113269736	rs11829717	A	G	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	113319536	rs148093874	C	T	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	113348870	rs1131454	G	A	5351.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	113357193	rs10774671	G	A	2811.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	113357209	rs1131476	G	A	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	113357237	rs1051042	G	C	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	113357442	rs2660	G	A	3191.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	113369644	rs7968145	C	T	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=25.42;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	113369715	rs11352835	TA	T	3088.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	113369759	rs7967461	G	C	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	113376320	rs3815178	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	113376331	rs1859331	C	A	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	113376388	rs1859330	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	113376452	rs1859329	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	113376543	rs3038120	C	CCAAAGGG	4152.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	113385918	rs7961861	C	T	4641.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr12	113386616	rs34647135	T	C	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	113386950	rs2285932	T	C	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	113387034	rs3214199	A	AG	2057.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,69:0.99:70
chr12	113398919	rs2072136	G	A	9122.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr12	113400824	rs113210418	CA	C	927.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	113400826	rs61942232	C	T	936.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	113405181	rs1557866	A	C	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr12	113425154	rs1293767	C	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	113435293	rs1293756	C	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr12	113435450	rs1293755	A	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	113444418	rs929291	T	C	5073.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	113445768	rs1293746	G	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	113447199	rs34600329	GC	G	650.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	113448288	rs15895	A	G	4425.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	113496313	rs1732785	C	T	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	113530845	rs3217697	C	CAG	3389.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	113530899	rs1628639	A	G	3130.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr12	113531295	rs1625170	T	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	113531305	rs1674095	A	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.96;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	113533050	rs2243397	C	T	25428.77	.	AC=2;AF=1.00;AN=2;DB;DP=951;set=Intersection	GT:AD:AF:DP	1/1:0,950:1.00:950
chr12	113533124	rs2243396	C	T	24386.77	.	AC=2;AF=1.00;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	1/1:1,921:1.00:922
chr12	113539822	rs1674101	A	G	4616.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	113541940	rs1613480	C	T	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	113544874	rs2468355	C	T	10823.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	113545393	rs736285	A	G	2558.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	113553408	rs1284878	C	T	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	113553481	rs1284879	C	T	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr12	113566050	rs60280118	GAC	G	890.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=24.07;ReadPosRankSum=0.535;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:3,34:0.92:37
chr12	113592980	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.386;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.585;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr12	113623315	rs371542295	TG	T	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.898;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=11.927;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.733;QD=3.43;ReadPosRankSum=-1.987;SOR=0.010;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr12	113796566	rs7965471	A	C	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	113837128	rs2069251	C	T	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr12	114261286	rs930004	T	G	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	114282496	rs2075387	C	T	3098.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	114282678	rs2075386	G	A	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	114296745	rs10744803	C	T	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	114356365	rs117728820	C	T	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	114377899	rs7299217	G	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	114793240	rs883079	C	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	114832510	rs2236017	C	A	2227.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	114837219	.	T	TA	155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.405;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:53,22:0.29:75
chr12	115110241	rs55865934	GT	G	352.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.424;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.07;ReadPosRankSum=-0.477;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr12	115110252	rs1532691	T	G	361.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=3.424;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.90;ReadPosRankSum=0.159;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr12	115118997	rs515746	G	A	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	115802115	.	G	GT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.925;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.949;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:111,24:0.18:135
chr12	116412921	rs1992068	AT	TC	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	116457804	rs11611238	T	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	116714113	.	T	TTGTG	90.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=18.03;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr12	116714158	rs60664000	C	T	231.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:2,9:0.82:11
chr12	116866112	rs202127912	CCA	C	342.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.228;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=8.487;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=1.068;QD=3.65;ReadPosRankSum=-1.011;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:69,25:0.27:94
chr12	116866113	rs370202370	CA	C	1357.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.816;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=12.001;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-1.215;QD=14.44;ReadPosRankSum=0.221;SOR=1.877;set=HC	GT:AD:AF:DP	0/1:31,63:0.67:94
chr12	117013730	rs7303998	G	C	4278.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	117186316	rs1532395	A	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	117217141	rs4767452	T	C	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr12	117286981	rs4767461	C	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	117289548	.	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.617;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.84;ReadPosRankSum=0.224;SOR=0.350;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chr12	117289613	rs903775	G	C	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=26.40;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	117290601	rs903772	T	C	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	117349014	rs11068230	C	G	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	117383320	rs4076700	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	117402755	rs6490101	T	C	110.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	117423264	rs7131746	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	117465857	rs4529958	T	C	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr12	117465981	rs2291916	T	C	5430.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	117486478	rs2291911	C	T	10335.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr12	117486642	rs2291910	T	A	10820.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr12	117494543	rs2173654	A	G	373.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	117646196	.	C	CGTGTGTGTGTGTGTGTGT	255.80	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.54;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	117653243	.	CT	C	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-2.156;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:20,10:0.33:30
chr12	117660467	rs816363	C	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	117662712	rs2293046	G	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	117665544	rs904658	A	C	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr12	117669914	rs3741475	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	117672339	rs1875140	T	C	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	117672711	rs10588671	CTATTAT	CTAT,C	247.77	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:7
chr12	117681353	rs34385734	A	ACCAT	505.06	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:1,13:0.93:14
chr12	117685138	rs2291908	T	C	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	117685270	rs1047735	G	A	3105.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	117691727	rs2682822	T	A	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	117693817	rs11068428	G	A	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	117696164	rs1093329	G	A	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	117701714	rs2293054	A	G	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr12	117768105	.	GCA	G	269.73	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:60,21:0.26:81
chr12	117905724	.	GT	G	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.200;ClippingRankSum=-0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.65;ReadPosRankSum=-0.862;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr12	117965091	.	CACACACACACACACAG	C	62.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.729;MLEAC=1;MLEAF=0.500;MQ=64.55;MQRankSum=-1.530;QD=1.65;ReadPosRankSum=-0.038;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr12	117965093	.	CACACACACACACAG	C	683.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr12	117993064	rs7955803	C	T	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr12	118017201	rs4767569	C	T	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	118199286	rs617641	C	G	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	118405834	.	CTTTTTTTTTTTTTTT	C	890.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.989;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=9.365;MLEAC=2;MLEAF=1.000;MQ=60.98;MQRankSum=-0.919;QD=31.81;ReadPosRankSum=0.624;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:4,24:0.86:28
chr12	118455759	rs2393374	T	G	13207.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr12	118480874	rs7312586	G	A	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	118506327	rs72125532	TTCCTCC	T	6756.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	118508796	rs7135008	A	G	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	118509086	rs7135400	A	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	118509148	rs7308222	C	T	5975.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.97;SOR=2.027;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr12	118509157	rs7296643	T	C	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.28;SOR=1.719;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	118509191	rs7307331	G	A	6861.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr12	118520170	rs7488309	G	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	118520240	rs6490164	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	118533728	.	C	CTT	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.23;ReadPosRankSum=0.235;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr12	118588761	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=1.222;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr12	118589069	rs2249624	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.87;QD=39.12;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	118589083	.	TGC	T	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-2.498;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr12	118589092	rs140297022	GCGCA	G	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.19;MQRankSum=0.000;QD=11.08;ReadPosRankSum=1.851;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr12	118650917	rs353886	C	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	118673483	rs5801274	G	GA	793.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.571;QD=13.45;ReadPosRankSum=-0.095;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr12	118675984	.	GA	G	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.506;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=6.306;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.070;QD=1.35;ReadPosRankSum=1.288;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:63,20:0.24:83
chr12	118681158	rs708862	T	A	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	118682751	rs428073	C	T	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	119560097	rs66674076	CAGGAAGGA	C	509.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=39.21;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	119560113	rs80308662	A	C	267.80	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=38.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr12	119563064	rs7311828	A	G	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr12	119563084	rs7296134	C	G	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	119563288	rs34186549	A	AC	7760.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	119563372	rs58198276	C	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,72:0.99:73
chr12	119568421	rs7298308	C	G	899.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	119568670	rs7298583	C	A	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	119568691	rs4298970	A	G	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	119588962	rs2723880	G	A	10847.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr12	119591176	rs34002484	A	AC	1490.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	119866533	rs1064319	A	G	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	120067561	rs2301653	T	C	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	120067727	rs2301654	C	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	120067864	rs2893805	G	A	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	120078473	.	TTC	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.25;ReadPosRankSum=-1.777;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:145,15:0.09:160
chr12	120078577	rs2301655	T	C	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.88;QD=26.90;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr12	120078664	rs111558498	A	AAG	184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=63.27;MQRankSum=0.000;QD=9.72;ReadPosRankSum=-1.161;SOR=2.448;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr12	120106376	rs6490267	G	T	846.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	120112099	rs278145	C	T	2854.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	120114205	rs10849690	C	G	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	120114507	rs278149	G	T	4812.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	120126074	rs10669112	A	AAGG	5040.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	120135717	rs278126	G	T	5894.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	120150196	rs804667	C	T	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	120156141	rs278102	G	A	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	120171995	rs278109	T	C	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr12	120172173	rs11064891	G	A	7107.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr12	120195354	rs34851548	TG	T	2544.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	120575549	rs3864938	A	C	8709.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	120720038	rs7960743	T	C	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	120741313	.	G	GA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.797;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=2.343;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.886;QD=1.26;ReadPosRankSum=1.927;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr12	120750239	rs2261612	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	120783527	rs1076205	G	A	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	120783561	rs1076206	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	120791042	rs1007469	G	A	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	120794653	rs1179441	T	C	2955.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	120796703	rs1179445	T	A	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	120800823	rs757123	A	G	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	120801064	rs34243955	GC	G	173.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	120806129	rs111293994	C	CT	3282.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=34.92;SOR=2.511;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	120947948	rs500003	G	A	7063.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	120959924	rs1167696	C	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	120977381	rs1167723	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	120994932	rs7956998	G	A	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	120995332	rs2292681	G	A	5714.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr12	120998481	rs787949	G	A	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	121004564	rs35710723	CA	C	215.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=0.545;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:10,23:0.70:33
chr12	121008870	.	C	CT	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=2.889;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-1.060;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:35,15:0.30:50
chr12	121014841	rs3088345	G	C	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	121017171	rs7174	A	G	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	121017264	rs2301456	C	T	5193.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	121017439	rs563920	A	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	121018862	rs10774559	C	T	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	121019323	rs591992	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	121079153	rs117649554	C	T	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	121088369	rs73222784	G	A	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	121093631	rs200201544	TGC	T	596.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.101;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=1.147;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:169,47:0.22:216
chr12	121093633	rs28669763	C	T	3988.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:52,167:0.76:219
chr12	121093655	rs55819450	C	T	8177.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:8,216:0.96:224
chr12	121097622	rs529584	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	121098478	rs56183824	T	C	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	121133037	rs504403	G	C	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr12	121151062	rs3833788	CTCTCTTG	C	7681.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr12	121157535	rs56179458	GC	AA	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	121157851	rs3752531	A	G	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	121163518	rs2239760	C	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	121174899	rs3914	T	C	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	121175560	rs695950	G	C	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	121175984	rs555404	T	C	6539.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr12	121176679	rs3915	C	T	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr12	121206349	rs56175661	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	121220375	rs2393717	G	C	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	121221461	rs55970240	A	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	121222149	.	G	A	374.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	121222556	rs3213567	T	C	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	121248584	rs674021	G	A	4405.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	121341535	rs35912287	G	GC	400.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr12	121341577	rs141191125	C	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=1.503;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	121341849	rs2686458	A	G	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	121416622	rs1169289	C	G	4297.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr12	121416650	rs1169288	A	C	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:2,149:0.99:151
chr12	121434630	rs55853809	C	CTCATTCAT	2012.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	121434833	rs2259852	G	A	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	121435475	rs2464195	G	A	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr12	121435536	rs55919842	A	G	8300.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	121435587	rs2259816	G	T	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	121437221	rs1169304	T	C	16533.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr12	121437382	rs1169305	A	G	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	121438844	rs735396	T	C	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	121439433	rs1169310	G	A	9010.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	121442241	rs73214128	C	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	121442883	rs11537856	G	A	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	121444022	.	AAAAG	A	94.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=6.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=1.122;SOR=1.708;set=HC	GT:AD:AF:DP	0/1:47,18:0.28:65
chr12	121444023	rs369076214	AAAG	A	368.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.032;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.325;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.573;SOR=0.398;set=HC	GT:AD:AF:DP	0/1:34,29:0.46:63
chr12	121450384	rs2254971	G	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	121454148	rs11537857	C	T	7214.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr12	121454257	rs2258227	T	A	13958.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr12	121603053	rs208304	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	121603118	rs507085	T	C	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	121603122	rs654856	C	A	7585.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	121603745	rs208306	T	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;MQ=60.98;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	121603825	rs36144485	ATGTT	A	4048.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr12	121603856	rs208307	C	G	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr12	121605599	rs686638	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	121615103	rs1718119	G	A	2428.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr12	121615283	rs1653598	T	C	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	121618278	rs112146943	CT	C	1022.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.913;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.904;QD=10.13;ReadPosRankSum=0.800;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:24,77:0.76:101
chr12	121622023	rs1626329	C	T	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	121622196	rs2230912	A	G	8023.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr12	121622520	rs1653624	A	T	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	121622563	rs1621388	G	A	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	121678327	rs63023660	C	CTTT	2006.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=26.06;ReadPosRankSum=0.075;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:9,68:0.88:77
chr12	121682051	rs2686340	T	C	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	121690305	rs112943694	T	TCTGGTGATCCGC	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	121690548	rs2686344	T	C	3907.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	121690555	rs2686345	T	C	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	121764799	rs4980993	A	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	121768248	rs2280067	C	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	121773552	rs3751162	T	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	121785795	rs1169961	C	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr12	121789927	rs1799525	C	A	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr12	121853164	rs11065565	T	C	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	121870922	rs12427382	G	A	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	121871006	rs11065575	A	C	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr12	121878659	rs1064951	C	T	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	121879111	rs2288154	G	C	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	121880520	rs3751131	G	A	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr12	121881848	rs10849885	G	A	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	121882098	rs3817551	T	G	12206.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr12	121883269	rs75939137	G	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	121954670	rs11433051	G	GA	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=0.938;QD=7.38;ReadPosRankSum=0.837;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr12	122064773	rs141919534	CCCGCCA	C	9446.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	122097043	.	GCACACA	G,GCA	4901.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.58;QD=37.42;SOR=1.421;set=HC	GT:AD:AF:DP	1/2:3,36,92:0.27,0.70:131
chr12	122186268	rs28651018	C	T	4484.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr12	122186317	rs28655666	G	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	122208968	rs11608693	G	A	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	122217856	rs59641582	G	GGT	1894.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	122231368	rs2707067	C	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr12	122231573	rs2707066	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	122243595	rs67605254	ATT	A	420.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	122243905	rs1168666	C	T	9687.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr12	122248582	rs895952	C	G	20530.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:1,765:1.00:766
chr12	122261456	rs3741593	G	A	8519.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr12	122281575	rs1795963	A	G	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	122284715	rs2247291	T	C	3085.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	122287132	rs3832816	CT	C	787.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	122295335	rs1154510	T	C	8881.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	122296784	rs3741591	C	T	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	122326812	rs2230681	T	C	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	122348746	rs4069666	A	G	13578.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr12	122348938	rs142734893	T	TTTTTG	1695.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	122353796	rs14259	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr12	122359397	rs142042908	G	GGAGGAGGAGGAGAAA	4257.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=51.30;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	122359698	rs10675519	C	CTT	291.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.21;ReadPosRankSum=2.258;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr12	122361929	rs34885077	CT	C	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	122369762	rs7313748	C	T	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	122386807	rs76025563	A	G	289.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	122389248	rs1185260	A	G	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	122391963	rs1154513	A	G	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	122396395	rs17852561	C	T	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	122405912	rs1169081	G	T	8529.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	122409664	rs658957	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	122439369	rs1182927	T	C	5666.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr12	122468756	rs59397548	A	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	122481641	.	CA	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=11.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.987;SOR=0.012;set=HC	GT:AD:AF:DP	0/1:39,16:0.29:55
chr12	122497001	rs28629903	T	C	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr12	122516897	rs147186759	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	122615515	rs4758654	C	G	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr12	122616759	rs7955571	G	A	4311.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.91;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	122616766	rs7955575	G	A	4567.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.53;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	122617989	rs7978353	A	G	9320.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr12	122618752	rs370257177	G	GT	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-1.400;SOR=1.641;set=HC	GT:AD:AF:DP	0/1:6,29:0.83:35
chr12	122619528	rs11287019	CT	C	852.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	122622207	rs11307581	CT	C	11635.73	.	AC=2;AF=1.00;AN=2;DB;DP=340;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr12	122623000	rs4758686	T	C	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr12	122625212	rs7488857	A	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	122626842	rs4758685	G	A	12456.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr12	122658383	rs6489173	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	122667631	rs77165791	T	G	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr12	122674032	rs10847725	C	T	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	122674758	rs4758651	G	A	16831.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:0,635:1.00:635
chr12	122684966	rs11060679	G	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	122691738	rs4758675	C	A	9599.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr12	122691958	.	G	T	3132.77	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr12	122723317	.	TAC	T	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.216;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:40,12:0.23:52
chr12	122760929	.	CCA	C	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-0.406;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:170,36:0.17:206
chr12	122762763	rs3066171	G	GA	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.357;QD=1.37;ReadPosRankSum=-0.529;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:64,19:0.23:83
chr12	122804034	rs3825097	A	G	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	122812503	rs1129167	G	C	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr12	122817507	rs7956480	A	G	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	122838956	rs4997380	A	G	690.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	122962337	.	CA	C	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.55;ReadPosRankSum=0.964;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:29,14:0.33:43
chr12	122962859	.	G	GA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=3.303;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:100,19:0.16:119
chr12	122964708	rs10846978	T	C	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	122966016	rs57144421	T	TA	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.64;ReadPosRankSum=0.868;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr12	122966373	rs4758692	T	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	122983460	rs7314638	A	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	122991478	rs9988963	C	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	122993011	rs10773230	C	T	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	122995468	rs10709275	GA	G	765.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	122999109	rs139913874	G	T	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	122999358	rs11322682	CA	C	290.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	122999535	rs6489056	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	123001737	rs57311174	G	A	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	123003317	rs11058562	T	C	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	123024332	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.428;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=3.296;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.674;QD=0.99;ReadPosRankSum=-0.477;SOR=1.387;set=HC	GT:AD:AF:DP	0/1:26,10:0.28:36
chr12	123031379	.	A	AT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.972;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.714;QD=2.88;ReadPosRankSum=-1.335;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:18,10:0.36:28
chr12	123061352	rs145299175	A	AT	358.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	123067587	rs7398861	G	A	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	123071365	rs7311684	AT	TA	1160.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=7.890;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.03;ReadPosRankSum=3.005;SOR=1.026;set=HC	GT:AD:AF:DP	1/1:2,27:0.93:29
chr12	123079020	rs10847242	T	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,31:0.97:32
chr12	123079035	rs4319547	A	G	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	123087442	rs7307735	A	G	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	123087819	.	TA	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.721;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=2.099;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr12	123110654	rs3803005	T	C	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	123187837	rs199782920	G	A	6715.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr12	123200247	rs56308926	G	C	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	123265952	rs1798563	A	G	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	123281967	rs10744394	G	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	123282110	rs139377064	C	T	254.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	123290951	rs34775544	GTT	G	1830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.627;QD=17.77;ReadPosRankSum=0.572;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:20,83:0.81:103
chr12	123297718	rs4759391	T	A	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	123307754	rs7954285	CA	TG	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr12	123333065	rs2135014	C	T	7177.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr12	123334874	.	C	CCCCTGGTTCAGTGGCCGCTGGGTTGGGGGGG	493.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=29.02;ReadPosRankSum=0.102;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:1,16:0.94:17
chr12	123334929	.	G	T	165	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=7;HapScore=2;MGOF=25;MMLQ=24;MQ=55.8;NF=5;NR=9;PP=165;QD=14.2693723248;SC=GCCGCTGGGTGGGGGGGGCCC;SbPval=0.57;Source=Platypus;TC=29;TCF=10;TCR=19;TR=14;WE=123334937;WS=123334919;set=Platypus	GT:AD:AF:DP	0/1:15,14:0.48:29
chr12	123334946	.	G	A	66	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=1;HapScore=2;MGOF=37;MMLQ=27;MQ=54.55;NF=0;NR=5;PP=66;QD=20.1542425094;SC=GCCCTGGTTCGGTGGCCGCTG;SbPval=1.0;Source=Platypus;TC=18;TCF=4;TCR=14;TR=5;WE=123334954;WS=123334936;set=Platypus	GT:AD:AF:DP	1/0:13,5:0.28:18
chr12	123335240	.	T	TG	133	.	AC=1;AF=0.500;AN=2;BRF=0.64;FR=0.7346;HP=6;HapScore=2;MGOF=24;MMLQ=15;MQ=46.29;NF=4;NR=1;PP=133;QD=31.6;SC=GCCGCTGGGTTGGGGGGCCCT;SbPval=0.75;Source=Platypus;TC=8;TCF=6;TCR=2;TR=5;WE=123335248;WS=123335230;set=Platypus	GT:AD:AF:DP	0/1:3,5:0.62:8
chr12	123335287	rs12369846	A	G	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	123335483	rs2271048	A	G	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	123335488	rs2271049	G	A	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	123335527	rs2271050	C	T	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	123339344	rs2292136	A	G	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr12	123339712	rs2292138	A	G	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr12	123340453	rs11418615	G	GC	2700.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	123341289	rs897386	A	C	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.61;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	123341297	rs897385	A	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	123341833	rs7138398	G	C	5819.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	123341863	rs2343109	G	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	123342628	rs34131980	CCTCTT	C	5646.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	123343571	rs2343110	T	G	17209.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr12	123343572	rs5801491	G	GGC	17200.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr12	123344910	rs937765	A	C	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	123345347	rs7306948	G	A	5393.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr12	123345360	rs7298176	T	C	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	123345736	rs10847910	C	G	14101.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr12	123345756	rs3215148	G	GC	13061.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr12	123352179	rs3825143	C	T	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	123425575	rs4148866	C	T	8311.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	123433137	rs10848106	T	C	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	123460823	rs883563	A	G	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr12	123460962	rs884956	T	C	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	123466111	rs55742290	C	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	123471402	rs2049506	T	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	123473254	rs1463877	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	123476586	rs7135296	G	A	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	123477311	rs937564	T	C	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	123485188	rs883263	A	G	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr12	123645803	rs1051431	G	A	9612.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr12	123647725	rs1727296	G	C	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	123651162	rs1716167	A	G	1764.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	123664514	rs1727301	G	A	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	123665695	rs1727306	A	G	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=25.72;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr12	123679040	.	G	A	535.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr12	123679171	.	A	ATT	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=-1.163;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr12	123682594	rs11610710	G	A	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	123694724	rs2682434	C	T	4536.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	123699200	rs77954523	GTTT	G	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	123699520	rs1727322	A	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	123703103	rs2851451	T	C	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	123707527	rs34047404	GTA	G	2002.74	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:6,68:0.92:74
chr12	123707552	rs36043549	TA	T	3843.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr12	123710835	rs1626703	A	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.24;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	123715113	rs941306	C	T	122.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	123738678	rs1568427	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	123746357	rs4759416	C	G	11221.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr12	123746510	rs4759417	C	T	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	123794022	rs6488867	T	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr12	123794450	rs2277343	A	T	633.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	123799974	rs6488868	A	G	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr12	123801672	rs10846515	T	G	4782.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr12	123810662	rs111400678	A	AC	3843.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=31.77;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	123810873	rs61388686	G	A	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr12	123812207	rs7959415	C	T	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	123812611	rs10846517	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	123812629	rs28419092	G	C	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	123813493	rs7301163	C	A	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	123815668	rs6488869	A	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	123816007	rs11282939	T	TATGTTG	2313.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	123821234	rs7486223	T	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	123825339	rs7312145	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	123825389	rs7315453	T	C	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	123832710	rs11325003	TA	T	6343.73	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	123832746	rs10846523	G	A	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr12	123875394	rs28660993	C	T	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr12	123907750	rs71085902	G	GT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.339;QD=1.90;ReadPosRankSum=-0.372;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr12	123960444	.	ATTTTTTT	A,ATT	412.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=19;set=Intersection	GT:AF:DP	1/1:0.92:12
chr12	123960474	rs28971833	A	G	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	124003047	rs60479214	CA	C	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.191;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.522;QD=1.92;ReadPosRankSum=-0.140;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:60,30:0.33:90
chr12	124008073	rs2292500	A	G	4294.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr12	124069111	rs71088937	GGGC	G	4503.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	124069213	rs786446	T	C	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr12	124072268	rs35178369	G	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	124081391	.	T	C	681.77	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr12	124086620	rs786427	G	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	124086998	rs786428	C	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr12	124090453	rs786436	A	G	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	124090605	rs4047521	ACT	A	3185.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr12	124102562	.	GT	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.146;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr12	124102894	rs79786297	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	124172760	.	C	CT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.255;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.92;ReadPosRankSum=0.095;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr12	124207098	rs7301641	T	C	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.15;SOR=1.226;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	124209332	rs1139789	T	C	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.20;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	124209352	rs11837144	C	T	5016.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	124210782	rs1399961	T	C	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr12	124218359	rs10744159	T	G	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr12	124220055	rs2271660	T	C	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	124220354	rs2333838	A	C	110.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr12	124229429	rs7135542	T	C	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr12	124258887	rs7131750	T	C	534.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	124265687	rs11057353	T	C	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr12	124267638	rs11057354	A	G	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	124267703	rs11057355	T	C	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	124268458	rs7303002	A	G	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	124274474	rs10846559	A	G	3659.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr12	124274758	rs35056478	C	CT	231.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr12	124303401	.	A	T	381.77	.	AC=1;AF=0.500;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr12	124315327	.	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.107;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr12	124325977	rs4930729	T	G	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	124330311	rs34934281	C	T	6783.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.964;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr12	124332702	rs10846561	A	G	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	124333519	rs7960854	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr12	124350360	rs7313897	G	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr12	124350444	rs7314963	C	T	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	124350704	rs10773043	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	124352338	rs10846565	T	G	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	124360117	rs10846567	G	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	124362256	rs113178558	T	TG	1189.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.034;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.469;QD=23.33;ReadPosRankSum=2.144;SOR=1.569;set=HC	GT:AD:AF:DP	1/1:4,47:0.92:51
chr12	124363724	rs72053758	GTGTC	G	929.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	124364131	rs1317312	G	C	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr12	124366150	rs34756279	CT	C	1852.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:14,120:0.90:134
chr12	124392843	rs79810037	C	G	12268.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:1,481:1.00:482
chr12	124393076	rs74624536	T	G	6413.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr12	124393117	rs78985577	G	A	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	124399155	rs79478560	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	124399550	rs1316952	T	C	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	124409502	rs7133378	G	A	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr12	124414098	rs3802999	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	124417889	rs4930721	C	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	124418472	rs77020228	C	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	124418674	rs12298484	C	T	5297.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr12	124419062	rs11057396	A	C	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	124420076	rs113646068	C	CAGGA	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	124427306	rs11057401	T	A	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr12	124427524	rs35825716	G	C	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	124428162	rs4930725	T	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr12	124496864	rs80197353	T	G	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:84,77:0.48:161
chr12	124497113	rs150362388	A	G	3832.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:254,190:0.43:444
chr12	124798801	rs12318072	C	T	11852.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr12	124809879	rs77571124	T	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;MQ=68.83;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr12	124809926	rs200275711	C	CG	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=70.00;QD=42.52;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	124809927	.	C	G	117	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=10;HapScore=4;MGOF=17;MMLQ=23;MQ=69.42;NF=6;NR=3;PP=117;QD=16.8634680608;SC=GACACCGCCCCCCCCCCCGCC;SbPval=0.54;Source=Platypus;TC=10;TCF=7;TCR=3;TR=9;WE=124809936;WS=124809917;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr12	124809928	.	C	CT,CCT	637.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=15;set=Intersection	GT:AF:DP	1/1:1.00:15
chr12	124810968	rs1006100	C	T	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=0.972;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	124820013	rs1106317	A	G	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	124821696	rs2229842	C	T	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr12	124822006	rs146138051	G	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	124824721	rs143952466	C	CGCCGCTGCT	3364.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	124825447	rs1702334	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	124826598	rs2230942	T	C	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	124831067	rs2272370	C	A	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr12	124832474	rs1244065	G	A	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr12	124832492	rs1244064	C	G	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	124832606	rs1244063	A	G	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	124835352	rs4765551	A	C	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	124838591	rs4765555	C	G	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	124838772	rs1244082	C	G	13992.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,317:1.00:317
chr12	124838772	.	CGT	GGA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=27;MQ=60.0;NF=136;NR=144;PP=2947;QD=20;SC=GGGCTGAGGGCGTGTCTGTGG;SbPval=0.44;Source=Platypus;TC=296;TCF=149;TCR=147;TR=280;WE=124838782;WS=124838762;set=Platypus	GT:AD:AF:DP	1/1:16,280:0.95:296
chr12	124838774	rs3817108	T	A	14042.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,310:1.00:310
chr12	124838897	rs1244081	A	G	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	124839150	rs2271142	G	A	8593.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr12	124839165	rs2271141	G	A	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	124839540	rs2271139	C	A	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr12	124839899	rs870051	T	C	2018.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	124839945	rs870052	T	C	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	124841421	rs4765144	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	124848137	rs1794956	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	124856660	rs3741513	T	A	14846.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr12	124857234	rs1702329	C	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr12	124859045	rs2695993	A	G	5320.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr12	124859135	rs11057606	G	A	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	124873079	rs7960906	T	G	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr12	124885249	rs2293514	C	T	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr12	124885290	rs2293513	T	C	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr12	124887058	rs35831183	G	GGCT	4562.73	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:34,201:0.86:235
chr12	124887093	.	C	CTGT	1686	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=1;HapScore=1;MGOF=14;MMLQ=27;MQ=61.03;NF=6;NR=79;PP=1686;QD=19.8941176471;SC=GCTGCTGCTGCTGTTGTTGCT;SbPval=0.87;Source=Platypus;TC=128;TCF=14;TCR=114;TR=85;WE=124887101;WS=124887083;set=Platypus	GT:AD:AF:DP	0/1:43,85:0.66:128
chr12	124922325	rs1702322	C	T	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	124934459	rs1147284	C	G	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr12	124968349	rs747443	T	C	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	124979833	rs872224	C	G	1708.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	125263204	rs701104	A	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	125324553	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=24;MMLQ=23;MQ=50.03;NF=121;NR=93;PP=2965;QD=20;SC=TTTCTCCGCACCCTCACCCCA;SbPval=0.55;Source=Platypus;TC=220;TCF=123;TCR=97;TR=214;WE=125324561;WS=125324543;set=Platypus	GT:AD:AF:DP	1/1:6,214:0.97:220
chr12	125324731	rs61308172	AT	A	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.549;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=2.520;QD=2.08;ReadPosRankSum=-1.047;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:44,18:0.29:62
chr12	125396165	rs55777033	T	TAA	518.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.651;QD=16.72;ReadPosRankSum=0.549;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr12	125400206	rs6488957	A	G	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr12	125434434	rs4562928	C	G	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	125434580	rs4447263	C	T	8651.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr12	125434716	rs4078216	G	A	9317.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr12	125435388	rs10773125	C	T	1428.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,55:0.98:56
chr12	125436850	rs4375522	G	A	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr12	125436897	rs4502074	A	G	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:2,118:0.98:120
chr12	125437019	rs4429156	T	C	8360.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr12	125437236	rs6488960	A	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	125438414	rs12367953	A	G	1650.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	125438516	rs4516060	T	C	9276.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr12	125438523	rs4258464	C	T	9359.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=1.056;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr12	125438549	rs4606565	A	G	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr12	125441856	rs11057932	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	125444975	rs4765007	T	C	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	125445096	rs4765008	C	G	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	125448960	rs4076777	C	T	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:1,142:0.99:143
chr12	125451162	rs61942952	G	A	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	125451277	rs56213993	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	125451487	rs35364982	C	T	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr12	125451532	rs35177301	G	C	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	125451561	rs17879868	T	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	125451589	rs35874447	A	G	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr12	125453232	rs10773130	A	G	8329.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr12	125453235	rs11057940	C	A	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.66;SOR=1.135;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr12	125456004	rs4542508	C	A	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	125456911	rs6488966	A	G	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	125461976	rs33931896	C	T	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr12	125465023	rs4072887	C	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	125465269	rs376470858	ACTC	A	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=0.150;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:159,16:0.09:175
chr12	125467158	rs11558556	C	T	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr12	125467238	rs12424339	G	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	125562809	rs7303092	G	A	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr12	125562966	rs4765025	T	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	125587706	rs7138557	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	125591844	rs2297478	C	T	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	125619308	rs2291248	C	T	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr12	125621419	rs41473449	A	G	5981.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr12	126003890	rs964997	G	A	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr12	126003934	rs964998	T	C	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr12	126068417	rs6489006	T	C	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	126128476	rs11610291	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	126128871	rs12305906	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	126135195	rs3803152	A	G	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	126932624	rs758564	G	A	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	126932764	rs758565	C	G	261.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	126947430	rs1019149	G	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	127229254	rs10847207	A	G	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr12	127229506	rs10847208	T	C	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr12	128108780	rs3803151	T	C	1658.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr12	129028708	rs11610490	G	C	713.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	129028712	rs12812251	G	C	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	129181625	rs902058	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	129181701	rs902059	A	G	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	129181810	rs885546	A	G	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	129181834	rs902060	A	G	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr12	129189591	rs4533104	A	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr12	129190021	rs11059841	A	G	7426.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr12	129283711	rs2291350	G	A	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	129293267	rs7311875	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr12	129293346	rs11059924	C	T	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	129298468	rs10688448	C	CAATA	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr12	129298727	.	A	AGACCTGAGCGCCGTATGATG	8967.73	.	AC=2;AF=1.00;AN=2;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.58;QD=44.84;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr12	129298759	.	C	T	2586	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=22;MQ=52.84;NF=104;NR=71;PP=2586;QD=20;SC=ACCTGACCGCCGTATGATGGA;SbPval=0.65;Source=Platypus;TC=369;TCF=209;TCR=160;TR=175;WE=129298767;WS=129298749;set=Platypus	GT:AD:AF:DP	0/1:194,175:0.47:369
chr12	129298775	.	C	CCACCGTATGATGGACCTGACCGCTGTATGATGGACCTGAG	14263.73	.	AC=2;AF=1.00;AN=2;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.76;QD=52.83;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr12	129298819	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.44;FR=0.5000;HP=1;HapScore=1;MMLQ=21;MQ=54.43;NF=175;NR=167;PP=2962;QD=20;SC=ACCTGACCGCCGTATGATGGA;SbPval=0.5;Source=Platypus;TCR=213;TR=342;WE=129298827;WS=129298805;set=Platypus	GT:AD:AF:DP	1/0:97,342:0.78:439
chr12	129298819	.	C	CGTATGATGGACCTGACCGCTGTATGATGGACCTGACCGCT	12821.73	.	AC=2;AF=1.00;AN=2;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=45.47;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:5,277:0.98:282
chr12	129299675	rs2306683	C	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	129338293	rs10847702	A	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr12	129360367	.	CA	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=0.672;QD=1.59;ReadPosRankSum=-0.759;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr12	129397089	.	A	AAT	35	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=25;MQ=60.0;NF=0;NR=3;PP=35;QD=15.3333333333;SC=ATATGTGATAAATATATATAT;SbPval=1.0;Source=Platypus;TC=19;TCF=1;TCR=18;TR=3;WE=129397097;WS=129397079;set=Platypus	GT:AD:AF:DP	1/0:16,3:0.16:19
chr12	129399352	rs11610307	G	A	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr12	129410738	rs141839609	CAAT	C	608.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.24;MQRankSum=0.588;QD=32.04;ReadPosRankSum=-0.956;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr12	129410802	rs60364802	C	T	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	129432149	rs470655	A	G	319.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	129559086	rs555131	C	A	7243.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,271:0.99:273
chr12	129566284	.	ATT	A,AT	1878.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.054;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=5.663;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.006;SOR=0.207;set=HC	GT:AD:AF:DP	1/2:14,48,72:0.36,0.54:134
chr12	130015535	.	G	GAAAAAA	2168.73	.	AC=2;AF=1.00;AN=2;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;QD=36.76;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr12	130521184	rs611963	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=41.44;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	130521207	rs622000	C	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	130521234	rs34472041	C	CAAA	743.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.535;QD=37.19;ReadPosRankSum=-0.580;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,19:0.95:20
chr12	130521306	rs600949	G	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr12	130838987	rs2173082	C	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr12	130839645	rs1874521	A	C	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	130847389	rs2242363	A	G	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	130883554	rs79117967	CT	C	328.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=2.254;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:114,45:0.28:159
chr12	130884347	rs756186	A	G	2420.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr12	130892163	rs7310840	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr12	130912757	rs2277356	C	T	6110.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	130935710	rs2398519	C	G	4527.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr12	130941150	rs2277361	G	C	5848.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr12	130941338	rs1356081	G	A	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr12	130963439	.	C	T	811.77	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:40,40:0.50:80
chr12	131276448	rs4759786	G	T	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr12	131280714	rs10848205	T	C	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr12	131285663	rs1881060	T	C	2672.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	131296908	rs9668291	C	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	131297348	rs4759794	T	G	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr12	131306314	rs17564	C	G	3115.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr12	131311629	rs112850087	G	A	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.25;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr12	131323708	rs10848214	T	G	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	131438971	rs56090874	G	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr12	131439239	rs10848261	T	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	131453378	rs7309920	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	131466562	rs4759534	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr12	131471608	rs1547577	T	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	131476665	rs5801945	CAA	C	777.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.645;QD=18.52;ReadPosRankSum=0.731;SOR=2.101;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr12	131488566	rs10773836	C	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr12	131488568	.	CT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.228;QD=2.34;ReadPosRankSum=-1.961;SOR=1.352;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr12	131498946	rs1212936	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr12	131498995	rs1195923	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	131555329	rs10744491	C	A	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.52;QD=25.19;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr12	131590404	rs4759544	G	A	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr12	131593506	rs11061329	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr12	131620578	rs884522	C	T	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr12	131620588	rs868158	A	G	9039.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr12	131620738	rs2280683	A	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr12	131622735	rs7302341	T	C	8608.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr12	131622833	rs2277337	T	C	2137.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr12	131687263	rs61937058	C	T	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr12	131687287	rs7486559	G	C	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr12	131692116	rs11061381	T	C	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.37;QD=31.08;SOR=3.745;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr12	131954010	rs201016738	C	T	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.442;MLEAC=1;MLEAF=0.500;MQ=46.96;MQRankSum=0.266;QD=7.30;ReadPosRankSum=0.000;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr12	132237750	rs1051219	C	T	17008.77	.	AC=2;AF=1.00;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr12	132237848	rs1982528	T	C	17953.77	.	AC=2;AF=1.00;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr12	132240937	rs3217666	C	CAT	1292.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	132241229	rs7136191	A	G	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr12	132250712	rs1051233	G	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	132262911	rs75324057	A	T	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr12	132269830	rs66665803	G	GA	4023.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr12	132271113	rs7136643	T	C	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr12	132313098	.	G	GGCTGCCGCT	412.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.27;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr12	132323089	rs7965611	C	G	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr12	132395052	rs7295593	G	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr12	132396343	rs11615995	C	T	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	132396603	rs11616018	C	T	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	132398247	rs199854918	C	CA	99.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:105,24:0.19:129
chr12	132398256	rs4964880	C	A	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.799;QD=14.51;ReadPosRankSum=0.118;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:31,101:0.77:132
chr12	132401642	.	T	C	1395	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=5;HapScore=1;MGOF=43;MMLQ=22;MQ=56.87;NF=49;NR=40;PP=1395;QD=16.0648450848;SC=GGCTGTGGGATGGGGGTCGGA;SbPval=0.59;Source=Platypus;TC=92;TCF=50;TCR=42;TR=89;WE=132401650;WS=132401632;set=Platypus	GT:AD:AF:DP	1/1:3,89:0.97:92
chr12	132401663	.	T	C	873	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=5;HapScore=1;MGOF=54;MMLQ=23;MQ=54.77;NF=29;NR=20;PP=873;QD=18.5259431132;SC=GGCTGTGGGATGGGGGTCGGA;SbPval=0.6;Source=Platypus;TC=52;TCF=30;TCR=22;TR=49;WE=132401671;WS=132401653;set=Platypus	GT:AD:AF:DP	1/1:3,49:0.94:52
chr12	132401691	.	CGGAGGCTGTG	C	1486	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=3;MGOF=58;MMLQ=23;MQ=50.75;NF=4;NR=1;PP=1486;QD=309.255077233;SC=GGATGGGGGTCGGAGGCTGTG;SbPval=0.93;Source=Platypus;TC=7;TCF=4;TCR=3;TR=5;WE=132401720;WS=132401674;set=Platypus	GT:AD:AF:DP	0/1:2,5:0.71:7
chr12	132401704	.	A	G	586	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=3;MGOF=58;MMLQ=23;MQ=48.05;NF=4;NR=0;PP=586;QD=155.192803137;SC=AGGCTGTGGGATGGGGCTCGA;SbPval=1.0;Source=Platypus;TC=11;TCF=10;TCR=1;TR=4;WE=132401720;WS=132401674;set=Platypus	GT:AD:AF:DP	0/1:7,4:0.36:11
chr12	132401712	.	C	CG	619	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=1;HapScore=3;MGOF=58;MMLQ=23;MQ=47.43;NF=9;NR=0;PP=619;QD=73.5555555556;SC=GGATGGGGCTCGAGGCTGTGG;SbPval=1.0;Source=Platypus;TC=10;TCF=9;TCR=1;TR=9;WE=132401720;WS=132401674;set=Platypus	GT:AD:AF:DP	1/1:1,9:0.90:10
chr12	132401866	.	C	T	527	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=4;MGOF=50;MMLQ=28;MQ=54.89;NF=12;NR=4;PP=527;QD=35.1107007842;SC=GCTCGGAGGCCGTGGGATGGG;SbPval=0.97;Source=Platypus;TC=24;TCF=12;TCR=12;TR=16;WE=132401874;WS=132401831;set=Platypus	GT:AD:AF:DP	1/1:8,16:0.67:24
chr12	132402020	rs4964918	T	C	3825.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr12	132403161	rs11609348	A	G	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr12	132403305	.	A	ATAGGGTGTGTGGGGTG	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.692;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=0.295;QD=21.15;ReadPosRankSum=2.894;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr12	132403323	rs113517126	C	T	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-0.481;QD=3.26;ReadPosRankSum=0.140;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr12	132404212	rs7299195	A	G	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	132406275	rs7311029	A	C	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr12	132427909	rs7961398	A	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	132498170	rs117748869	C	T	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr12	132512261	rs35569693	T	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr12	132547093	.	A	ACAG	4689.73	.	AC=1;AF=0.500;AN=2;DP=388;set=Intersection	GT:AD:AF:DP	0/1:62,212:0.77:274
chr12	132547112	.	C	CAGT	1524	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=1;MGOF=11;MMLQ=29;MQ=62.11;NF=38;NR=77;PP=1524;QD=13.2869565217;SC=GCAGCAGCAGCAGCAGCAGCA;SbPval=0.36;Source=Platypus;TC=210;TCF=63;TCR=147;TR=115;WE=132547120;WS=132547102;set=Platypus	GT:AD:AF:DP	0/1:95,115:0.55:210
chr12	132626668	rs1133690	T	C	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr12	132630822	rs10794454	C	T	7394.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr12	132635521	rs7397057	T	C	4860.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr12	132635779	rs12818246	C	T	5560.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr12	132682481	rs12308155	T	G	16257.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr12	132682484	rs12306514	A	G	16282.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.10;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,361:1.00:361
chr12	132683632	rs4074045	A	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	132683862	rs6598205	G	A	8857.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr12	132683961	rs6598206	T	C	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	132685837	rs10794457	A	G	9323.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr12	132688279	rs10902510	A	G	4094.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr12	132811399	rs74514445	A	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr12	132811498	rs368985675	TC	T	6947.73	.	AC=2;AF=1.00;AN=2;DB;DP=267;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:2,261:0.99:263
chr12	132811652	.	TG	CT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=1;HapScore=1;MGOF=22;MMLQ=28;MQ=58.76;NF=20;NR=53;PP=2947;QD=20;SC=TTTACACACATGCCACACACC;SbPval=0.52;Source=Platypus;TC=73;TCF=20;TCR=53;TR=73;WE=132811661;WS=132811642;set=Platypus	GT:AD:AF:DP	1/1:0,73:1.00:73
chr12	132811670	.	A	G	1385	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=47;MMLQ=23;MQ=58.55;NF=14;NR=47;PP=1385;QD=23.2749379106;SC=ACCCTTCCCAAGGCCGTCCCT;SbPval=0.53;Source=Platypus;TC=61;TCF=14;TCR=47;TR=61;WE=132811678;WS=132811660;set=Platypus	GT:AD:AF:DP	1/1:0,61:1.00:61
chr12	132824197	.	ATGGCCGCACTCGCCCTCACCCCGTCCCCGGATGCCG	A	25982.73	.	AC=2;AF=1.00;AN=2;DP=1585;set=Intersection	GT:AD:AF:DP	1/1:5,1013:1.00:1018
chr12	132824450	rs73166888	G	T	51769.77	.	AC=2;AF=1.00;AN=2;DB;DP=1973;set=Intersection	GT:AD:AF:DP	1/1:1,1966:1.00:1967
chr12	132862868	rs78370891	G	A	11181.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr12	132911861	rs28672358	G	C	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr12	132911948	rs28722154	T	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr12	132912031	rs28420217	A	G	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	132912181	rs71453143	CGTGT	C	3186.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr12	133067343	.	A	G	1218.77	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr12	133067473	rs28435470	G	A	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr12	133104461	rs4883566	A	G	4619.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr12	133153281	rs10870473	A	T	2875.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	133158632	rs3751304	C	T	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr12	133159004	rs7308900	C	G	2199.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.55;SOR=5.728;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	133159846	rs56171012	C	T	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr12	133160238	rs7966712	G	C	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	133181399	rs11146963	T	C	15584.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr12	133181425	rs11146964	A	G	15761.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:1,602:1.00:603
chr12	133182818	rs12819734	G	A	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr12	133195579	rs200710959	CGCGGGGCGCGGGGT	C	3248.73	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	133195625	rs11146976	G	A	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.72;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr12	133196596	rs7964634	T	C	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr12	133196773	rs7964872	T	G	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr12	133197018	rs6560891	G	A	10427.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr12	133198021	rs4883632	C	T	33498.77	.	AC=2;AF=1.00;AN=2;DB;DP=1259;set=Intersection	GT:AD:AF:DP	1/1:0,1259:1.00:1259
chr12	133201947	rs4883544	T	C	15729.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,603:1.00:603
chr12	133202004	rs4883543	C	T	13942.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr12	133202215	rs5745075	G	A	7602.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr12	133202428	rs5745073	G	A	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr12	133208886	rs5745023	C	T	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	133208979	rs5745022	T	C	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr12	133210985	rs5745005	C	T	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr12	133212692	rs4883625	T	C	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr12	133212737	rs4883624	C	T	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr12	133214517	rs5744975	G	A	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=2.869;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr12	133214522	rs5744974	G	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=2.867;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133214768	rs5744970	A	G	8454.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr12	133218724	rs5744951	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr12	133219072	.	A	AACG	22619.73	.	AC=2;AF=1.00;AN=2;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr12	133219831	rs5744944	T	C	6886.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr12	133220321	rs4883614	T	A	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr12	133220652	rs5744932	A	AG	4108.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	133220670	rs10870483	G	A	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr12	133225446	rs4883538	G	T	7791.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr12	133226159	rs4883613	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133226196	rs4883537	G	A	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr12	133233705	rs5744889	T	C	2771.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr12	133234389	rs5744884	CAT	C	3891.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr12	133234741	rs10649524	C	CGTGT	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr12	133236000	rs5744857	C	T	14824.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,562:1.00:562
chr12	133237753	rs369732588	GA	G	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.902;QD=1.49;ReadPosRankSum=-0.485;SOR=0.299;set=HC	GT:AD:AF:DP	0/1:45,20:0.31:65
chr12	133238076	rs5744844	T	C	4909.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr12	133240782	rs4883592	A	G	2292.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr12	133242140	rs4883586	A	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr12	133245149	rs5744798	A	G	10950.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr12	133249139	rs5744780	T	A	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr12	133250118	rs4883555	C	T	8926.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr12	133252556	rs4883545	T	C	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr12	133263743	rs111877885	A	C	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	133277983	rs7958567	T	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133297182	rs10870498	A	G	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr12	133304877	rs142913801	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr12	133310659	rs372085055	TA	T	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=3.495;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.561;QD=2.10;ReadPosRankSum=-1.041;SOR=0.325;set=HC	GT:AD:AF:DP	0/1:95,41:0.30:136
chr12	133349620	rs3741483	C	G	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr12	133349893	rs3741484	A	G	695.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.99;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr12	133353168	.	C	T	716	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=28;MQ=54.9;NF=27;NR=3;PP=716;QD=25.0257070849;SC=GCCCCTCCAGCTCCTTCCTCC;SbPval=0.57;Source=Platypus;TC=30;TCF=27;TCR=3;TR=30;WE=133353176;WS=133353166;set=Platypus	GT:AD:AF:DP	1/1:0,30:1.00:30
chr12	133354470	rs900444	T	C	8246.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:2,324:0.99:326
chr12	133360530	rs11147073	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr12	133363376	rs7976379	G	T	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr12	133365497	rs968522	A	C	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr12	133372395	rs4758905	A	C	8556.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr12	133373375	rs2242292	C	T	3325.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr12	133378610	rs75002364	G	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr12	133381403	rs138594544	G	A	14384.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr12	133383923	rs10781653	T	C	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr12	133384415	.	A	C	139.84	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=23.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	133384864	rs3741486	G	A	7770.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr12	133389998	rs7134809	T	C	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr12	133398439	rs66472368	CA	C	824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.918;QD=6.76;ReadPosRankSum=1.710;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:35,87:0.71:122
chr12	133418069	rs1045979	C	T	4717.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr12	133420533	rs150643970	CA	C	1474.74	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:13,98:0.88:111
chr12	133423695	rs2306537	A	G	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr12	133423866	rs10747087	G	A	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr12	133428131	rs2306540	C	T	10962.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr12	133433173	rs2062163	T	C	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr12	133435716	rs35011845	T	G	9517.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.415;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=0.841;SOR=0.245;set=HC	GT:AD:AF:DP	1/1:1,372:1.00:373
chr12	133439115	rs9943858	G	A	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr12	133682655	rs710945	A	G	6827.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr12	133683261	rs905226	T	C	9554.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr12	133683280	rs905225	A	T	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr12	133696743	rs144074942	G	GAAC	1756.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr12	133696754	rs55957232	A	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr12	133732624	rs3763151	C	T	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr12	133761207	rs137892024	ATTTG	A	454.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.26;MQRankSum=0.667;QD=26.73;ReadPosRankSum=0.822;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr12	133764701	rs11427950	C	CT	81.82	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=13.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr12	133767966	rs11147291	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr12	133768273	rs10870589	G	C	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr12	133768693	rs200581552	CTT	C	341.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.023;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=1.256;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:4,17:0.81:21
chr12	133770306	rs7960924	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr12	133778684	rs7963812	G	A	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr12	133778796	rs7975069	C	T	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	19600529	rs73425803	G	A	5833.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr13	19601129	rs35887366	TA	T	4948.73	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr13	19606511	rs35670111	AT	A	505.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	19752625	rs605109	A	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	19756026	rs783595	C	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	19775652	rs66950030	CA	C	253.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr13	19775755	rs115152530	A	G	5419.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	19775867	rs114445450	G	A	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.31;QD=41.05;SOR=3.345;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	19775875	rs138429293	T	C	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.31;QD=46.30;SOR=4.310;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	19778601	rs141790008	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=28.14;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	19782646	rs9512066	G	A	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr13	19933372	rs4771142	G	A	4093.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr13	19941233	rs3002090	C	A	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	19949111	rs71197092	TC	T	239.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	19949155	rs34247662	T	G	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	19949218	rs35633897	C	T	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.27;QD=44.94;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	19949227	rs34936230	C	T	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.60;QD=43.13;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	19949262	rs34280326	G	A	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	19949287	rs34088473	G	T	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	19962055	rs9512903	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	20000630	rs2497218	T	C	11897.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr13	20000702	rs4408395	G	C	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	20004762	rs7139692	T	C	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,140:0.99:141
chr13	20004798	rs2497068	C	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	20038584	rs7339103	A	G	6990.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr13	20039289	rs2497079	A	T	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	20041323	rs2497251	G	T	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	20041493	rs71092363	TA	T	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.000;QD=5.81;ReadPosRankSum=1.006;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:16,22:0.58:38
chr13	20041563	rs2492391	C	T	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr13	20066994	rs78472618	T	C	1873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=50.99;MQRankSum=-9.299;QD=7.94;ReadPosRankSum=-6.563;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:178,58:0.25:236
chr13	20067011	rs76437836	A	C	2279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=50.67;MQRankSum=-9.534;QD=7.78;ReadPosRankSum=-3.967;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:211,82:0.28:293
chr13	20067081	rs76668072	A	G	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.478;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=5.309;MLEAC=1;MLEAF=0.500;MQ=49.32;MQRankSum=-7.425;QD=6.89;ReadPosRankSum=0.949;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:146,99:0.40:245
chr13	20067140	rs76824079	T	G	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-6.280;QD=10.87;ReadPosRankSum=-1.920;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:48,25:0.34:73
chr13	20067145	rs112509877	T	C	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.34;MQRankSum=-5.714;QD=10.94;ReadPosRankSum=-1.015;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr13	20067148	rs77396540	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-6.011;QD=10.51;ReadPosRankSum=-1.376;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:42,18:0.30:60
chr13	20233804	.	CA	C	298.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=3.138;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.439;QD=1.23;ReadPosRankSum=1.192;SOR=0.470;set=HC	GT:AD:AF:DP	0/1:184,58:0.24:242
chr13	20240743	rs9508812	T	C	1894.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	20244960	rs3052670	CT	C	152.82	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=1.470;SOR=0.593;set=HC	GT:AD:AF:DP	1/1:1,12:0.92:13
chr13	20247171	rs4769866	A	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	20247194	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.434;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr13	20247227	.	GGTTTT	G	6584.73	.	AC=2;AF=1.00;AN=2;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	20247238	rs10531847	GTT	G	3985.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.247;QD=26.75;ReadPosRankSum=2.076;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:13,136:0.91:149
chr13	20251791	rs2290810	T	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	20252093	rs9508836	G	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	20277188	rs140475170	CA	C	441	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-2.190;QD=11.92;ReadPosRankSum=0.634;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:6,31:0.84:37
chr13	20277413	rs75085951	T	C	5296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.243;ClippingRankSum=0.000;DB;DP=755;ExcessHet=3.0103;FS=4.148;MLEAC=1;MLEAF=0.500;MQ=49.81;MQRankSum=-7.652;QD=7.02;ReadPosRankSum=2.958;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:451,304:0.40:755
chr13	20325625	rs2340650	C	G	5416.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr13	20356941	rs9508887	T	A	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	20398669	rs9508907	T	C	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	20398742	rs9508908	C	T	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr13	20601004	rs7981272	T	C	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	20608354	rs11272380	T	TTTTCTTGAGGTG	4041.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	20633470	rs11432433	T	TA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.799;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.483;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr13	20656138	rs11344087	CT	C	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.546;QD=11.99;ReadPosRankSum=1.106;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,37:0.82:45
chr13	20657188	rs9509028	T	G	4636.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	20716533	rs968566	G	T	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	20762956	rs3751385	A	G	5566.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	21006475	rs7983215	T	C	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	21086599	rs7139733	G	A	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	21099828	rs9315667	A	C	4322.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	21148408	rs4326897	G	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	21156999	rs9509289	G	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	21157257	rs35700311	GA	G	1782.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	21170193	rs149283826	G	GTAAAA	701.27	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:1,15:0.94:16
chr13	21205124	rs35290473	TG	T	11661.73	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr13	21205140	rs1329519	A	T	8280.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr13	21205192	rs9509307	G	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	21311977	rs732414	G	A	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	21331904	rs6490614	A	C	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	21370398	.	GA	G	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=-0.610;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr13	21374333	rs9579954	A	G	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr13	21396511	rs73167445	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	21401400	rs7322678	T	A	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	21416945	rs2762995	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	21476997	rs7326480	A	G	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	21555544	rs870846	CT	GA	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=2.439;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	21555554	rs870848	G	A	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.46;SOR=1.927;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	21557771	.	C	T	9560.77	.	AC=2;AF=1.00;AN=2;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr13	21562482	rs10658032	C	CGGGGCG	2438.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.37;QD=42.78;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	21562832	rs2770928	C	T	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr13	21562948	rs558614	G	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	21620085	rs7317471	T	C	8364.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr13	21714920	rs2281914	G	A	7574.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr13	21720956	rs4620	C	T	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	21721220	rs3742222	G	C	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	21729064	rs9552370	A	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	21729952	rs11446085	T	TAA	1199.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=22.64;ReadPosRankSum=0.000;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr13	21732028	rs10700757	C	CA	528.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=1.030;QD=8.96;ReadPosRankSum=1.025;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:17,42:0.71:59
chr13	21732094	rs4770121	C	T	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr13	21736133	rs4561294	C	T	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	21746453	rs2026600	T	C	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	21751005	rs9550717	G	C	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	21949267	rs3759473	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	21951016	rs9509669	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	21952907	.	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.764;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=6.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-1.143;SOR=1.944;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr13	21952990	rs4770149	T	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	21974399	rs79578210	C	CT	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	22033122	rs57438463	G	C	9280.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr13	22096611	rs1359190	T	G	442.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	22096843	rs1200028	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	22140911	rs66467009	TA	T	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.817;QD=1.01;ReadPosRankSum=1.355;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:70,20:0.22:90
chr13	22178308	rs2761924	G	A	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	22275394	rs9509841	A	G	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr13	22275583	rs9509842	G	A	11685.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr13	23238308	rs56308927	CT	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.558;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.650;QD=5.10;ReadPosRankSum=-0.352;SOR=0.317;set=HC	GT:AD:AF:DP	0/1:12,24:0.67:36
chr13	23251016	rs35856253	CT	C	1702.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	23253313	rs9506904	T	C	7698.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	23279254	rs314874	G	A	7742.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	23279279	rs314873	T	C	9603.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr13	23808732	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=-1.957;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:93,18:0.16:111
chr13	23894744	rs1536725	T	G	3561.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.60;ReadPosRankSum=-0.962;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:4,102:0.96:106
chr13	23894746	rs1536726	T	G	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.19;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	23894748	rs1536727	T	G	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr13	23894750	rs1536728	T	G	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	23894752	rs1536729	T	G	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.42;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	23898454	rs9510700	C	T	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	23898509	rs1800353	T	C	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	23898664	rs1800354	A	G	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	23907677	rs2737701	C	T	7087.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr13	23908034	rs2737700	A	G	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr13	23908992	.	G	A	5887.77	.	AC=2;AF=1.00;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	24200794	rs79042385	C	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	24234369	rs3751366	G	T	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=2.059;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	24234375	rs3751365	A	T	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	24234517	rs3751364	A	G	4892.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr13	24242166	rs35041805	C	T	8815.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr13	24242801	rs7329483	A	G	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	24243200	rs3751363	T	C	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	24384129	rs9510869	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	24411772	rs7333040	T	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr13	24415734	rs9580766	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	24436230	rs1886972	C	T	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	24449166	rs10595689	AACACAC	AAC,A	364.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=16;set=Intersection	GT:AF:DP	1/1:1.00:8
chr13	24465743	rs3864971	A	G	14231.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:2,548:1.00:550
chr13	24823928	rs80073311	T	C	6379.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr13	24825754	rs17080537	C	T	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	24845159	.	ACT	A	48.73	.	AC=1;AF=0.500;AN=2;DP=64;set=Intersection	GT:AD:AF:DP	0/1:35,7:0.17:42
chr13	24853011	.	T	TTTCCTTCCTTCC	600.73	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	24860240	rs9507300	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	24868752	rs34017703	TA	T	4659.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	24869025	rs7993660	A	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	24869048	rs9553233	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	24876752	rs33990382	T	C	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr13	24877151	rs9580929	A	G	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	24877179	rs9578699	G	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	24877308	rs9578700	A	G	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	24877442	rs9580930	G	A	9795.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr13	24877445	rs11149059	T	C	9763.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr13	24877550	rs9580931	G	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	24895805	rs4589405	G	A	13494.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr13	25008873	rs61741951	G	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	25016853	rs41288260	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=3.803;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-5.186;QD=0.72;ReadPosRankSum=2.634;SOR=0.338;set=HC	GT:AD:AF:DP	0/1:83,16:0.16:99
chr13	25016870	rs3816221	C	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.804;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-4.580;QD=1.57;ReadPosRankSum=1.473;SOR=0.166;set=HC	GT:AD:AF:DP	0/1:60,15:0.20:75
chr13	25021263	rs77269056	T	C	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.747;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-10.938;QD=2.08;ReadPosRankSum=2.150;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:169,45:0.21:214
chr13	25021323	rs73172125	A	G	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.948;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-6.353;QD=2.74;ReadPosRankSum=-1.042;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:80,24:0.23:104
chr13	25073399	rs34014909	G	GT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.047;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.007;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:60,18:0.23:78
chr13	25259580	rs11620015	C	T	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	25263299	rs2070810	G	A	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	25264369	rs735770	T	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	25264666	rs7996324	G	T	6163.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	25264715	rs7996486	G	A	9125.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	25264723	rs7997850	C	T	8778.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr13	25265008	rs7986008	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	25265103	rs7981616	A	G	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	25265139	rs2071490	T	C	4836.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	25266886	rs963985	C	T	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	25267088	rs963983	C	T	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr13	25268417	rs9553420	G	A	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	25268445	rs9553421	G	A	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	25268776	rs2289898	A	G	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	25338586	rs9578783	A	G	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	25355965	rs5802305	GT	G	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.20;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	25356053	rs9707144	T	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	25363477	rs11616245	A	T	1935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=1.977;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:18,100:0.85:118
chr13	25363776	rs6490979	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	25367282	rs1451568	A	C	22328.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chr13	25370255	rs1446294	A	G	1242.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.37;ReadPosRankSum=-0.792;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:2,49:0.96:51
chr13	25376420	rs1026014	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	25399752	rs2121253	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	25400338	rs12869348	A	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	25404743	rs4769382	T	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	25417795	rs34260997	TATC	T	1477.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	25419176	rs6490984	A	G	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	25442631	rs113369387	A	G	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.83;QD=24.59;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	25442631	.	A	AAAAAAAAAAAAAG	1019	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=20;HapScore=1;MGOF=71;MMLQ=28;MQ=57.24;NF=15;NR=4;PP=1019;QD=53.7894736842;SC=AAAAAAAAAAACTTGCTTTCT;SbPval=0.42;Source=Platypus;TC=23;TCF=19;TCR=4;TR=19;WE=25442639;WS=25442621;set=Platypus	GT:AD:AF:DP	1/1:4,19:0.83:23
chr13	25442921	rs2275938	A	C	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr13	25444784	.	A	C	2893.77	.	AC=2;AF=1.00;AN=2;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	25448120	rs8001764	G	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	25457207	rs9318911	T	C	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	25458232	rs34991318	AGTT	A	6429.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	25458267	rs3831371	G	GAATT	6240.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	25458650	rs1530876	G	A	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	25460428	rs9511502	A	G	8291.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr13	25466774	rs9318917	T	C	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	25466955	rs3742165	T	C	7973.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr13	25467010	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=-1.199;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:109,22:0.17:131
chr13	25525370	rs9511519	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	25525488	rs2167398	G	A	11265.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr13	25670776	rs78432860	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=8.048;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-5.728;QD=1.09;ReadPosRankSum=-2.337;SOR=1.573;set=HC	GT:AD:AF:DP	0/1:141,13:0.08:154
chr13	25670777	rs76472384	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.208;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=7.318;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-5.275;QD=1.65;ReadPosRankSum=-3.007;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:138,15:0.10:153
chr13	25670780	rs79494472	C	G	263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=4.857;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-4.601;QD=1.74;ReadPosRankSum=-3.745;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:133,19:0.12:152
chr13	25670797	rs75760907	C	G	635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=5.461;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.048;QD=3.81;ReadPosRankSum=-1.373;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:141,26:0.16:167
chr13	25670801	.	T	TG	690.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=6.858;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-3.972;QD=4.11;ReadPosRankSum=-0.722;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:141,27:0.16:168
chr13	25670803	rs76858651	A	G	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=6.487;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-3.886;QD=3.95;ReadPosRankSum=-0.479;SOR=1.317;set=HC	GT:AD:AF:DP	0/1:145,29:0.17:174
chr13	25670813	rs3002212	C	T	924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.200;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.342;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-3.609;QD=4.58;ReadPosRankSum=0.298;SOR=1.113;set=HC	GT:AD:AF:DP	0/1:164,38:0.19:202
chr13	25670851	rs75475407	A	G	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=5.122;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.881;QD=7.43;ReadPosRankSum=2.841;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:197,61:0.24:258
chr13	25670868	rs200859889	G	A	2398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=6.474;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-10.041;QD=8.13;ReadPosRankSum=2.412;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:222,73:0.25:295
chr13	25670873	rs77142265	A	G	2554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=6.269;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-10.468;QD=8.43;ReadPosRankSum=1.956;SOR=1.072;set=HC	GT:AD:AF:DP	0/1:225,78:0.26:303
chr13	25670877	rs112107735	G	A	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=5.291;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-10.337;QD=8.34;ReadPosRankSum=1.879;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:227,78:0.26:305
chr13	25670907	rs76264750	C	A	2755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=4.180;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-11.518;QD=8.45;ReadPosRankSum=0.110;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:238,88:0.27:326
chr13	25670919	rs76861216	A	G	2676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-11.840;QD=8.61;ReadPosRankSum=-0.051;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:230,81:0.26:311
chr13	25670953	rs74040928	G	A	2660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.871;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-14.080;QD=8.26;ReadPosRankSum=-0.173;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:240,82:0.25:322
chr13	25670955	rs79397892	C	T	2738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.410;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-14.204;QD=8.38;ReadPosRankSum=0.103;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:245,82:0.25:327
chr13	25670978	.	C	T	2658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.989;ClippingRankSum=0.000;DP=331;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-14.251;QD=8.06;ReadPosRankSum=1.389;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:253,77:0.23:330
chr13	25670981	rs77476965	G	C	2587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-14.378;QD=7.68;ReadPosRankSum=1.122;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:257,80:0.24:337
chr13	25670984	rs11619791	C	T	2661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-14.237;QD=7.92;ReadPosRankSum=0.864;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:255,81:0.24:336
chr13	25670988	rs74564616	T	G	2767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-14.170;QD=8.19;ReadPosRankSum=0.745;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:256,82:0.24:338
chr13	25671008	rs76447065	C	T	3225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=1.995;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-11.596;QD=9.09;ReadPosRankSum=-0.463;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:261,94:0.26:355
chr13	25671015	rs75314628	A	G	3069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-10.216;QD=9.00;ReadPosRankSum=-0.736;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:249,92:0.27:341
chr13	25671027	rs78826513	A	G	3018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=8.028;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-8.998;QD=8.14;ReadPosRankSum=0.105;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:274,97:0.26:371
chr13	25671062	rs78534836	A	G	2794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-10.049;QD=6.48;ReadPosRankSum=-0.010;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:317,114:0.26:431
chr13	25671080	rs76241879	A	G	3680.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.043;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.609;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-11.420;QD=8.11;ReadPosRankSum=1.656;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:341,113:0.25:454
chr13	25671089	rs75281454	G	T	3673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-11.252;QD=7.80;ReadPosRankSum=2.075;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:359,112:0.24:471
chr13	25671097	rs140090397	A	AT	3482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-10.376;QD=7.43;ReadPosRankSum=2.536;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:363,106:0.23:469
chr13	25671122	rs79072440	C	T	2004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.800;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-12.329;QD=4.27;ReadPosRankSum=2.271;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:379,91:0.19:470
chr13	25671143	rs78671990	A	G	2931.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=1.413;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-15.108;QD=5.56;ReadPosRankSum=-0.941;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:424,103:0.20:527
chr13	25671149	rs368285293	ACGG	A	3037.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-15.843;QD=5.49;ReadPosRankSum=-1.450;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:448,105:0.19:553
chr13	25671154	rs371971190	AGACGGAACT	A	3087.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=1.493;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=-16.772;QD=5.45;ReadPosRankSum=-0.642;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:469,98:0.17:567
chr13	25671168	rs78552667	C	T	2836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.923;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=2.334;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-16.913;QD=5.21;ReadPosRankSum=-1.702;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:444,101:0.19:545
chr13	25671172	rs79593984	C	A	2946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.109;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=2.275;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-16.511;QD=5.35;ReadPosRankSum=-2.456;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:445,106:0.19:551
chr13	25671195	rs201411821	A	G	3383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=2.246;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-19.137;QD=6.17;ReadPosRankSum=-2.044;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:436,112:0.20:548
chr13	25671200	rs76111404	C	T	3607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-19.506;QD=6.52;ReadPosRankSum=-1.240;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:441,112:0.20:553
chr13	25671206	rs76614854	A	G	3709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;ClippingRankSum=0.000;DB;DP=551;ExcessHet=3.0103;FS=3.158;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-19.268;QD=6.76;ReadPosRankSum=-1.282;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:433,116:0.21:549
chr13	25671210	rs80062522	C	T	3763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=2.201;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-18.666;QD=6.86;ReadPosRankSum=-0.994;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:431,118:0.21:549
chr13	25671214	rs201081849	T	G	3658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-17.627;QD=6.85;ReadPosRankSum=-1.059;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:415,119:0.22:534
chr13	25671271	rs79246694	A	G	5148.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=547;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-13.764;QD=9.52;ReadPosRankSum=2.868;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:389,152:0.28:541
chr13	25671272	rs376589131	AG	A	5245.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-13.783;QD=9.82;ReadPosRankSum=3.031;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:384,150:0.28:534
chr13	25671274	rs76994938	C	T	5241.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-13.710;QD=9.89;ReadPosRankSum=2.161;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:380,150:0.28:530
chr13	25671292	rs80261016	C	T	3507.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:361,163:0.31:524
chr13	25671310	rs371130768	TTATGA	T	4967.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.500;MQ=57.40;MQRankSum=-11.486;QD=9.66;ReadPosRankSum=4.455;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:368,146:0.28:514
chr13	25671320	.	A	G	5009.77	.	AC=1;AF=0.500;AN=2;DP=494;set=Intersection	GT:AD:AF:DP	0/1:346,142:0.29:488
chr13	25671332	rs371570689	CA	C	3741.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=5.697;MLEAC=1;MLEAF=0.500;MQ=56.31;MQRankSum=-8.549;QD=7.67;ReadPosRankSum=3.319;SOR=1.064;set=HC	GT:AD:AF:DP	0/1:349,139:0.28:488
chr13	25671369	rs76804900	G	T	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100;ClippingRankSum=0.000;DB;DP=480;ExcessHet=3.0103;FS=9.433;MLEAC=1;MLEAF=0.500;MQ=56.16;MQRankSum=-8.818;QD=2.61;ReadPosRankSum=0.770;SOR=1.271;set=HC	GT:AD:AF:DP	0/1:375,101:0.21:476
chr13	25671398	rs77306665	C	T	248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=10.483;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-13.348;QD=0.51;ReadPosRankSum=-1.475;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:425,64:0.13:489
chr13	25671667	rs75484271	A	T	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.829;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-17.299;QD=1.86;ReadPosRankSum=0.837;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:312,39:0.11:351
chr13	25671672	rs78778235	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.391;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-17.674;QD=1.59;ReadPosRankSum=1.388;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:327,39:0.11:366
chr13	25671679	rs112901832	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-18.355;QD=1.36;ReadPosRankSum=2.282;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:355,39:0.10:394
chr13	25671688	rs113617207	G	C	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-19.143;QD=0.70;ReadPosRankSum=3.838;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:394,37:0.09:431
chr13	25671699	rs201614365	GT	CC	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=1.012;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-21.373;QD=0.36;ReadPosRankSum=4.891;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:450,37:0.08:487
chr13	25671742	rs140135080	G	A	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.031;ClippingRankSum=0.000;DB;DP=738;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-25.655;QD=2.37;ReadPosRankSum=-1.976;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:646,91:0.12:737
chr13	25671755	rs116223079	G	A	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.828;ClippingRankSum=0.000;DB;DP=753;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-25.877;QD=2.23;ReadPosRankSum=-0.272;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:664,88:0.12:752
chr13	25671759	rs115121649	C	T	1688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.281;ClippingRankSum=0.000;DB;DP=752;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-25.512;QD=2.25;ReadPosRankSum=0.288;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:662,89:0.12:751
chr13	25671786	rs113301206	G	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-24.799;QD=0.80;ReadPosRankSum=1.216;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:613,63:0.09:676
chr13	25671795	rs113416318	C	T	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534;ClippingRankSum=0.000;DB;DP=639;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-23.577;QD=1.27;ReadPosRankSum=-0.468;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:577,61:0.10:638
chr13	25671803	rs150143049	AGCT	A	1205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-19.598;QD=2.49;ReadPosRankSum=-4.787;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:425,60:0.12:485
chr13	25671812	.	T	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=0.914;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-22.439;QD=1.14;ReadPosRankSum=-2.582;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:488,52:0.10:540
chr13	25672126	.	C	T	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697;ClippingRankSum=0.000;DP=210;ExcessHet=3.0103;FS=2.118;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-13.936;QD=0.86;ReadPosRankSum=-0.068;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:192,17:0.08:209
chr13	25672135	.	C	A	218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-14.063;QD=1.04;ReadPosRankSum=-0.423;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:191,20:0.09:211
chr13	25672139	.	G	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.096;ClippingRankSum=0.000;DP=216;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-14.198;QD=1.00;ReadPosRankSum=-0.059;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:195,20:0.09:215
chr13	25672158	.	G	A	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;ClippingRankSum=0.000;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-16.090;QD=0.82;ReadPosRankSum=1.504;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:249,24:0.09:273
chr13	25672168	.	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045;ClippingRankSum=0.000;DP=289;ExcessHet=3.0103;FS=0.772;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-16.556;QD=0.86;ReadPosRankSum=0.885;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:262,26:0.09:288
chr13	25672177	.	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313;ClippingRankSum=0.000;DP=309;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-17.128;QD=0.67;ReadPosRankSum=0.234;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:282,26:0.08:308
chr13	25802491	rs4770813	A	G	1982.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	25808286	rs9551188	A	C	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	25823441	rs62619824	C	T	11846.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:0,268:1.00:268
chr13	25823451	rs17082035	A	G	11957.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr13	25832082	rs142779718	AAAAT	A	1784.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	25832831	rs149367120	CTAAAAT	C	1497.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	25836053	rs41290732	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	25840496	rs75290152	T	A	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	25848404	rs4387458	A	C	532.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	25886930	rs150998333	T	C	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.33;SOR=2.802;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	25886930	.	TAA	CAG	1649	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=3;HapScore=1;MGOF=8;MMLQ=27;MQ=60.0;NF=54;NR=10;PP=1649;QD=26.6010605447;SC=CATGAACTTTTAAGGATCCTT;SbPval=0.64;Source=Platypus;TC=70;TCF=58;TCR=12;TR=64;WE=25886940;WS=25886920;set=Platypus	GT:AD:AF:DP	1/1:6,64:0.91:70
chr13	25886932	rs4341628	A	G	3407.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.60;SOR=2.245;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	25893363	rs59567333	GTTTATA	G	1083.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	25901781	rs7997070	A	C	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	25911050	rs75002041	AT	A	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.994;QD=2.07;ReadPosRankSum=-0.577;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr13	26137989	rs12871941	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	26148966	rs6491066	C	T	3103.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	26155953	rs7335339	G	C	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	26182773	rs68126613	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	26182894	rs67280567	C	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	26273385	rs6491088	G	C	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	26273403	rs7335858	C	A	5724.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	26273538	rs2296003	C	T	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	26411561	rs71793513	CCACACACA	C	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=42.78;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	26445247	rs145017510	GGT	G	3353.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:15,185:0.93:200
chr13	26501227	rs1185907	C	T	6296.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr13	26535625	rs9511998	G	A	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	26586775	rs2274135	C	T	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	26706476	.	C	T	4114.77	.	AC=2;AF=1.00;AN=2;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr13	26974562	rs998692	G	A	5615.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	27828529	.	A	ATTTTTTT	249.77	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=35.68;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	27829310	rs3094293	G	A	4136.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	27998074	rs371044297	C	CTT	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=-0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.21;ReadPosRankSum=1.990;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chr13	28009031	rs7323	G	C	7061.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr13	28009920	rs1218825	G	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	28133956	rs373436911	TA	T	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.929;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:129,57:0.31:186
chr13	28155920	rs11617897	C	G	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	28498323	rs9805632	G	C	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	28519354	rs2504220	A	C	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr13	28537242	rs1805108	A	C	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	28537317	rs1805107	G	A	7391.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr13	28537537	rs2504212	T	G	4428.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	28539185	rs2481953	T	A	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	28541583	rs2481967	T	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	28562605	rs3897926	T	G	4295.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:1,169:0.99:170
chr13	28589662	rs4497507	C	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=4.479;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	28597447	rs35829721	ATC	A	3078.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	28602226	rs60462219	AAG	A	2496.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr13	28607916	rs2491222	T	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	28607989	rs2491223	T	G	4830.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	28609825	rs2491227	A	G	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr13	28609846	rs2491228	A	T	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	28609991	rs2491229	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.23;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	28609997	rs2491230	T	C	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.22;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	28610183	rs2491231	A	G	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	28611259	.	T	G	229.78	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	28623699	rs9507985	G	T	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	28623759	rs9513004	C	T	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	28623938	rs67491524	G	GA	1009.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	28636084	rs7338903	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	28644510	rs2387350	C	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	28647489	rs35318238	GA	G	1261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=1.909;QD=9.35;ReadPosRankSum=0.457;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:28,107:0.79:135
chr13	28834833	.	A	AT	846.73	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	28835527	rs5802469	T	TC	1539.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	28882948	rs9579177	G	A	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	28883061	rs7993418	G	A	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	28885672	rs4771238	C	T	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.12;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	28886113	rs7328692	A	G	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	28886388	rs61763562	A	G	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	28893642	rs2296189	A	G	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	28942840	rs11374493	C	CT	703.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.999;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.788;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:34,58:0.63:92
chr13	28964325	rs7983774	G	A	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	28970917	rs7990486	C	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	28980150	rs5802481	A	AG	923.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	29012237	rs61763172	A	G	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	29275102	rs947027	T	C	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	29275129	rs705423	C	T	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr13	29674840	rs1536720	T	C	2655.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	29674855	rs1536719	A	G	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	29898768	rs928661	A	C	9425.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr13	29898881	rs928660	A	G	13916.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr13	29898889	rs928659	G	C	13247.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr13	30014373	rs7337496	C	T	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	30071310	rs2258198	G	T	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	30075114	rs882953	C	T	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr13	30077088	rs2482096	C	T	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	30090404	rs2989592	T	C	4727.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	30091516	rs2490267	T	C	7175.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr13	30091714	rs2482089	G	A	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr13	30091819	rs2482090	G	C	5695.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	30098215	rs2776957	C	T	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	30098226	rs2776958	A	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	30346392	rs140223719	CTATAT	C	4771.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	30351248	rs35681461	T	TA	5886.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	30805627	rs202087	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	30829757	rs11348486	CA	C	484.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.89;ReadPosRankSum=1.327;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:9,40:0.82:49
chr13	31036681	rs1929606	A	G	7003.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr13	31195409	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-1.473;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:104,28:0.21:132
chr13	31287979	rs147763360	G	GTA	5219.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:9,161:0.95:170
chr13	31330284	rs12721458	G	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	31480827	rs9531945	A	G	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	31531195	rs6560988	T	C	4584.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	31540569	.	CTTT	C	1154.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.918;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.21;ReadPosRankSum=0.268;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:6,46:0.88:52
chr13	31725617	rs2146895	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	31733057	rs41292151	G	A	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	31735759	rs2280059	G	A	19869.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,745:1.00:745
chr13	31789169	rs35344913	CT	C	1203.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.087;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.61;MQRankSum=0.771;QD=14.00;ReadPosRankSum=1.558;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:7,79:0.92:86
chr13	31796969	rs2147515	G	C	5451.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	31821093	rs9542300	T	C	960.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.409;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=1.308;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:6,59:0.91:65
chr13	31821992	rs4943266	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	31843320	rs281865462	TA	T	989.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	31848535	rs912600	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,62:0.98:63
chr13	31848823	rs728930	A	G	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	31850714	rs1028751	G	C	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	31850803	rs137981677	C	CACAT	2319.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	31860769	rs9543606	G	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	31861059	rs1397890	G	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	31891561	rs1041074	T	C	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	32336040	rs1536635	C	T	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	32339382	rs12870532	C	T	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	32340193	rs35564049	T	TA	1410.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:4,64:0.94:68
chr13	32676114	rs364995	A	G	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr13	32698544	rs629265	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	32723799	rs204558	C	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	32731667	rs11409421	T	TA	69.37	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr13	32747468	rs2073998	C	T	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	32758834	rs798971	A	G	7653.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr13	32768428	rs41292163	G	A	12280.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr13	32776028	rs73169120	C	A	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	32776060	rs9567419	G	T	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.305;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	32776153	rs9567420	T	C	9795.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr13	32776616	rs61750791	T	A	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	32776694	rs73169124	G	A	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	32798235	rs5802638	T	TA	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:3,53:0.95:56
chr13	32799288	rs1029398	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	32823882	rs2806630	G	A	3239.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	32825913	rs2806632	A	G	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	32825941	rs2806633	C	A	5616.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	32826186	rs2806634	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	32828553	rs2157961	A	G	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	32832149	rs2520686	T	C	3872.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	32832350	rs2806636	A	G	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	32834538	rs5802640	C	CTATCT	2289.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	32866221	rs6561216	A	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	32905265	rs206073	G	A	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	32912299	rs543304	T	C	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	32913055	rs206075	A	G	7706.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr13	32915005	rs206076	G	C	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	32920844	rs206080	T	C	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	32929387	rs169547	T	C	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	33052294	rs380627	C	T	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	33095620	rs621450	G	A	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	33101731	rs391612	T	C	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	33110831	rs149614093	C	T	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:359,170:0.32:529
chr13	33315186	rs2320469	C	T	673.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.906;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.43;ReadPosRankSum=0.538;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:5,36:0.88:41
chr13	33315189	rs2320470	G	T	673.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=0.637;SOR=0.668;set=HC	GT:AD:AF:DP	1/1:6,40:0.87:46
chr13	33349235	.	CT	C	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.453;QD=3.49;ReadPosRankSum=-0.285;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:36,29:0.45:65
chr13	33590851	rs2772364	T	C	14197.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr13	33627825	rs9536312	C	T	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=1.570;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	33627829	rs570875	T	G	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=1.515;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	33627858	rs9536313	C	G	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr13	33628138	rs9536314	T	G	7784.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr13	33628193	rs9527025	G	C	9745.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:1,358:1.00:359
chr13	33628239	rs9527026	G	A	11473.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr13	33635463	rs648202	T	C	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	33635835	rs649964	T	C	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr13	33635939	rs650439	T	A	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	33637913	rs34137141	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.496;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.732;QD=1.43;ReadPosRankSum=-1.191;SOR=1.277;set=HC	GT:AD:AF:DP	0/1:98,28:0.22:126
chr13	33701347	rs2764617	C	T	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	33704154	rs596742	C	T	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr13	35252882	rs9572094	T	C	6577.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr13	35618991	rs7996448	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	35633030	rs17775456	A	T	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	35730381	rs117397794	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	35735976	rs17051895	A	G	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr13	35806549	rs9565113	T	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.62;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	36141009	rs9544667	G	A	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	36224051	rs200267946	TACTGGG	T	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	36225929	rs7991019	T	C	3783.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	36402426	rs2296645	A	G	1571.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	36402475	rs2296646	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	36521433	rs1936004	T	G	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr13	36521460	rs1936003	A	G	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr13	36686138	rs3748308	T	C	5612.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr13	36700338	rs144431309	TTA	T	4845.73	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=32.52;SOR=1.939;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr13	36747798	rs1410633	C	G	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	36788529	rs3762116	C	T	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr13	36801256	rs9546784	T	C	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	36801415	rs9546785	C	T	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	36801579	rs9546786	A	G	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=41.76;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	36801587	rs9546787	T	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=42.33;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	36801612	rs138475016	T	TACACAC	1340.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	36805289	rs67328439	GA	G	2280.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:2,108:0.98:110
chr13	36805625	rs4397984	C	A	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	36814682	rs9546834	A	G	8651.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr13	36818037	rs9546862	A	G	8597.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr13	36818080	rs9546863	C	T	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr13	36822711	rs9315402	G	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	36822849	rs9315403	C	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	36822884	rs9315404	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	36822908	rs9315405	C	T	767.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	36827833	rs9546886	C	T	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	36827896	rs9546887	C	T	3608.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	36828092	rs138966884	G	GTTTTGTAAGCA	7596.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	36828237	rs9546897	T	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	36829085	rs912928	A	G	443.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	36829209	rs1078302	C	A	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	36829258	rs751518	G	A	5478.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	36829301	rs751519	A	T	6236.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr13	36871730	rs9547145	G	T	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	36939688	rs3736919	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	36939758	rs3736920	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	36940028	rs1041140	G	A	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr13	36940123	rs1041139	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	36942533	rs1056850	G	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	37007040	rs4245378	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	37007501	rs9576049	G	T	666.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	37401917	rs11285105	GT	G	2649.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	37439964	rs3748305	C	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	37526560	rs6563506	G	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	37546280	rs9576146	G	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	37569200	rs2323165	A	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.86;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	37579999	.	C	CAA	40.25	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=13.42;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr13	37580139	rs1127446	G	A	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	37581051	rs9576154	T	G	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	37583831	rs9469	G	A	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	37584838	rs7317750	G	A	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	37593424	rs9566175	T	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	37598113	rs4943441	A	G	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr13	37600199	rs4941856	A	G	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	37600284	rs9576155	G	A	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.27;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	37621528	rs1199983	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	37625601	rs1543738	T	C	2804.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	37625770	rs5802853	A	AG	1262.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	37679268	rs9576175	G	T	12646.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr13	38138730	rs4390468	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr13	38143325	rs58863577	CT	C	240.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr13	38148893	rs8000073	C	T	95.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	38152935	.	C	CA	125.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-0.000;QD=15.69;ReadPosRankSum=-0.854;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr13	38152959	rs7322626	T	G	295.90	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr13	38153130	rs7322993	T	C	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	38153351	rs7323378	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	38154189	rs7986347	G	A	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	38166068	rs9547968	C	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	38166357	rs9603229	T	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	38237872	rs2985171	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr13	38266000	rs7329237	G	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr13	38320594	rs35278654	TA	T	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr13	38357471	rs3904512	G	A	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr13	38924083	rs2231330	A	T	8457.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,305:0.99:307
chr13	38924263	rs2231332	T	C	12168.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr13	38930783	.	G	A	110	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=27;MQ=61.19;NF=5;NR=0;PP=110;QD=28.9542425094;SC=AATGATTATAGATGCCTAGAG;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=5;WE=38930791;WS=38930773;set=Platypus	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	38930893	rs2481880	C	T	517.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	38931144	rs9548318	T	C	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	38931650	rs34489703	G	GTT	2109.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	38932194	rs2150470	G	A	113.56	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=12.62;ReadPosRankSum=0.549;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,7:0.78:9
chr13	38932207	rs67284300	TA	T	104.52	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=11.61;ReadPosRankSum=-0.282;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,7:0.78:9
chr13	38932545	rs11381230	G	GT	266.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=0.238;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:3,18:0.86:21
chr13	38932648	rs2485786	C	T	185.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	38932681	rs2485785	G	T	97.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	39262057	rs1868464	G	A	10196.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr13	39263023	rs12874397	C	T	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr13	39263714	rs2496423	T	C	34049.77	.	AC=2;AF=1.00;AN=2;DB;DP=1271;set=Intersection	GT:AD:AF:DP	1/1:0,1266:1.00:1266
chr13	39338612	rs2442370	T	C	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	39542531	rs7323023	A	C	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.186;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	39546530	rs8000175	C	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	39598698	rs55989420	T	TA	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.960;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:96,28:0.23:124
chr13	39603384	.	TAAA	T	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=-0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-0.000;QD=8.74;ReadPosRankSum=1.188;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr13	39613187	rs45604133	A	G	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	39618366	.	TTG	T	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=8.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-2.412;SOR=1.909;set=HC	GT:AD:AF:DP	0/1:65,29:0.31:94
chr13	40229744	rs9603589	C	T	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr13	40254100	rs11414752	A	AT	1016.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;MQRankSum=0.313;QD=21.18;ReadPosRankSum=-1.523;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:2,46:0.96:48
chr13	40261945	rs4129745	A	G	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	40264066	rs9603593	T	C	227.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	40268685	rs9603594	T	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	40293288	rs5803008	AT	A	1679.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	40297684	rs7985075	C	T	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr13	40298620	rs58666375	CT	C	536.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.039;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=0.595;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:4,37:0.90:41
chr13	40298805	rs9532421	C	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	41302147	rs9549273	C	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	41323397	rs13508	C	T	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	41515286	rs1056820	T	A	11365.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr13	41517985	rs3764056	A	G	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	41525586	rs3736953	A	G	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	41533052	rs7799	T	C	15639.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr13	41705495	rs584594	A	G	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr13	41706800	rs9566703	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	41767338	rs2039134	A	G	6552.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=44.58;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr13	41767341	rs2039135	A	G	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=44.65;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	41791440	rs2274903	T	A	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	41797601	rs2026469	A	T	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	41807950	rs3751344	T	C	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	41834578	rs66465270	GT	G	622.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	41834744	rs2297555	C	T	10050.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr13	41835076	rs3215932	T	TA	2070.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr13	41835089	rs1332940	T	G	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	41837220	rs3818721	C	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	41893105	rs2065498	T	G	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	41902939	rs3812896	T	C	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr13	41948051	rs9525478	G	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	41949804	rs6560982	G	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	42032572	rs7136	T	C	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr13	42043086	rs2324791	C	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	42044508	rs396963	A	G	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	42189232	rs3862741	C	G	2359.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	42275473	rs7322461	A	G	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	42303930	rs67369169	C	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	42303944	.	C	CAT	513.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;MQRankSum=0.791;QD=36.70;ReadPosRankSum=1.498;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr13	42361743	rs112297676	T	TAC,TACAC	930.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=57;set=Intersection	GT:AF:DP	1/2:0.39,0.47:36
chr13	42407738	rs35383891	A	G	11214.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr13	42465490	rs7332372	C	T	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	42481712	rs2003064	C	T	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr13	42524368	rs34219937	GCAAA	G	226.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	42701739	rs670676	A	T	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	42748077	rs373481342	ATG	A	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.591;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr13	42763154	rs9525594	G	A	2636.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	42763505	rs9566933	C	T	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	42764439	rs1170119	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	42772717	rs9533031	G	T	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.96;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	42772774	rs35298264	GT	G	732.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.623;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=1.068;QD=10.32;ReadPosRankSum=-0.329;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:17,54:0.76:71
chr13	42780148	rs34351817	CT	C	755.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.644;QD=4.72;ReadPosRankSum=-1.270;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:76,84:0.53:160
chr13	42783012	rs168329	G	A	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	42793479	rs180870	G	A	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr13	42793766	rs11277175	AGGTTTTTC	A	3458.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	42794004	rs347382	G	A	4182.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	42803130	rs369829	A	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	42803341	rs545602	T	C	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	42882762	rs238314	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	43148565	rs2296533	T	C	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr13	43155168	rs2277438	G	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	43155443	rs2277439	G	A	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	43358309	.	C	CT	287.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238;ClippingRankSum=0.000;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.081;QD=5.33;ReadPosRankSum=0.709;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr13	43360772	rs57301416	T	TA,TAA	1055.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.48;MQRankSum=0.286;QD=16.76;ReadPosRankSum=-1.790;SOR=0.479;set=HC	GT:AD:AF:DP	1/2:8,40,15:0.63,0.24:63
chr13	43462422	rs1044856	A	T	5973.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr13	43474371	rs4942174	C	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr13	43491778	rs61066479	G	GA	460.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.45;ReadPosRankSum=0.397;SOR=0.264;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr13	43537240	rs1054813	A	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=4.743;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	43537246	rs9562444	C	T	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.20;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	43544964	rs9567077	G	T	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	43566099	rs942311	T	A	6673.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	43566373	rs3825511	A	C	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	43681281	rs200847296	T	C	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	43788036	rs703206	T	G	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr13	43839494	rs4306408	G	A	12572.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr13	43872419	rs4451860	C	T	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.74;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	43872451	rs141332734	C	CA	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.282;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,29:0.57:51
chr13	43930337	rs2281713	A	G	6256.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr13	43986771	rs2296041	G	A	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	44433700	rs1562216	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	44734696	rs4942287	A	G	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	44948295	rs201663302	T	TG	3177.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.81;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	44948302	rs199705926	GA	G	3148.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.00;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	44964723	rs2281848	C	T	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	44969907	rs1467624	G	A	7096.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr13	45010283	rs1555781	T	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	45090580	rs1336164	C	T	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	45517486	.	AAC	A	146	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=1;MGOF=4;MMLQ=23;MQ=59.78;NF=3;NR=4;PP=146;QD=21.4285714286;SC=CCTTAAAACAAACACACACAC;SbPval=0.57;Source=Platypus;TC=33;TCF=13;TCR=20;TR=7;WE=45517497;WS=45517476;set=Platypus	GT:AD:AF:DP	0/1:26,7:0.21:33
chr13	45556056	rs148833607	T	TCATGTTTAACATAAAACATAAAA	965.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	45563464	rs1140993	G	C	9664.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr13	45710748	rs9534041	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=24.32;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	45723823	rs141823802	G	GT	130.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	45724053	rs9534044	A	G	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	45725763	rs13378297	A	T	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.61;SOR=3.477;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	45768759	rs9534059	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	45826876	rs7982845	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;MQ=61.78;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	45826994	rs139972349	A	AT	1602.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:2,70:0.97:72
chr13	45841502	rs7331090	G	A	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	45912634	rs9595305	T	C	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	45914038	.	T	C	4602.77	.	AC=2;AF=1.00;AN=2;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	45914724	.	C	T	9373.77	.	AC=2;AF=1.00;AN=2;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr13	45914957	rs2234216	T	C	9375.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr13	45980223	rs35419409	A	AT	503.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:3,29:0.91:32
chr13	45982934	rs6561227	G	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	45985705	rs4941527	G	A	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	46039407	rs11619408	G	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	46060467	rs374009383	CG	C	3373.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	46060473	rs113621277	AC	A	3549.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	46066163	rs3014948	T	C	1971.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	46077301	rs3014959	G	A	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	46077381	rs3014960	G	A	1697.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	46085699	rs2985969	G	A	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	46085864	rs2985970	A	G	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr13	46093284	rs3818456	C	G	2148.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	46098994	rs3014966	T	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	46099243	rs2985984	A	G	3909.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	46103935	rs2274285	A	G	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr13	46104130	rs2274286	G	C	3857.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	46105021	rs66498730	AT	A	2014.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr13	46108643	rs3014901	T	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	46108853	rs3014902	TG	CA	8513.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	46148943	rs140782618	TG	T	214.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.063;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-0.082;SOR=0.153;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr13	46276503	rs872556	G	C	11625.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr13	46276766	rs17068928	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	46277016	rs755428	A	G	11603.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr13	46287153	rs9316154	A	C	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	46541673	rs9534264	T	A	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	46550061	rs11428563	G	GT	447.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	46562935	rs1134071	A	G	6737.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr13	46616462	rs3783200	A	C	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	46619026	rs962694	T	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	46619316	rs3736944	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	46627677	rs1049669	T	C	2891.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	46629944	rs1926447	A	G	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr13	46629995	rs1926446	C	A	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	46641324	rs151045790	TA	T	1195.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	46641466	rs9316179	A	G	10339.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr13	46641481	rs7337140	T	C	10144.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr13	46648094	rs3742264	C	T	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr13	46656669	rs2296642	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	46708291	rs4941543	T	C	11560.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,434:1.00:434
chr13	46717047	rs9534341	T	C	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	46717246	rs2182485	T	C	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	46718503	rs117279481	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	46722703	rs10631906	C	CTTAA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	46836201	rs2764598	A	G	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	46930372	rs9526171	T	C	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	47256071	.	T	TTGTGTGTGTGTG,TTGTGTGTGTG	750.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=35;set=Intersection	GT:AF:DP	1/1:1.00:20
chr13	47260054	rs842381	T	C	6738.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr13	47261970	rs842375	T	C	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr13	47273458	rs706621	G	C	2961.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	47279375	rs11483731	C	CT	2754.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	47279454	rs842387	A	G	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr13	47279680	rs3832915	A	AT	1002.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	47286523	rs2275679	G	A	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	47289958	rs9526223	C	T	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	47302906	.	AA	CC	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.806;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=40.334;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.904;SOR=5.813;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr13	47308109	rs2298086	A	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	47315984	rs3742274	T	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	47353945	.	C	T	108.77	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr13	47358540	rs8192889	T	C	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	47408902	rs58145637	A	AT	1851.76	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:24,111:0.82:135
chr13	47469940	rs6313	G	A	6900.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr13	47470824	rs6312	C	T	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	48547467	rs7320366	A	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr13	48547663	rs7326861	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	48563008	rs6561424	G	A	644.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	48563246	rs6561425	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	48571213	rs8001509	C	T	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	48575204	rs45602539	C	T	12491.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	48575207	rs11316376	GA	G	12483.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr13	48575292	rs9567972	C	T	13512.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr13	48653957	rs138539860	AAC	A	6579.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr13	48660380	rs41287449	T	C	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr13	48664556	.	T	TA	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.882;ClippingRankSum=0.000;DP=354;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=-0.017;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:281,57:0.17:338
chr13	48671081	rs1571256	A	G	9918.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr13	48878271	rs2854351	T	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr13	48878292	rs2252544	G	A	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	48919358	rs198617	T	G	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	48921884	rs198616	A	G	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	48922984	.	AT	A	31	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5559;HP=10;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=3;NR=0;PP=31;QD=14.3333333333;SC=AACTAAGGTCATTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=3;WE=48922992;WS=48922974;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr13	48947469	rs185587	G	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.132;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	48953655	rs11449461	C	CA	440.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.020;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.702;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.57;ReadPosRankSum=1.077;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:6,29:0.83:35
chr13	48955676	rs2804086	T	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	49033747	rs198580	G	A	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	49034022	.	A	ATTTCTTTCT	7244.73	.	AC=2;AF=1.00;AN=2;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;QD=31.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr13	49047520	.	AT	A	1471.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr13	49051012	rs3020646	C	T	7586.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr13	49107241	rs7997110	T	C	19215.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr13	49684436	.	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DP=209;ExcessHet=3.0103;FS=0.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.583;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:155,43:0.22:198
chr13	49752915	rs1407826	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	49840024	rs6561512	A	G	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr13	49852430	rs2274149	T	G	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	49865748	rs6561514	A	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	49866869	rs3751418	G	C	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr13	49885216	rs912547	A	G	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	49951027	.	G	GTAGATAGATAGATAGATAGATAGA	3139.73	.	AC=2;AF=1.00;AN=2;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	49951142	rs8002829	T	C	6050.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	49951193	rs8002858	T	C	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	49951310	rs8002153	G	T	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	50007393	rs7998660	C	T	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	50008112	rs3764091	G	A	2987.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	50008301	rs3764090	A	G	10691.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr13	50035151	rs721457	G	C	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr13	50035208	rs2077848	G	A	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr13	50038080	rs12429813	G	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	50050620	rs7998427	A	G	2505.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr13	50054308	rs4142285	G	A	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	50054346	rs7996852	G	T	9478.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr13	50057097	rs2057413	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	50057633	rs11619265	A	G	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.35;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	50070244	rs370049093	GGGGC	G	670.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=41.92;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	50080847	rs2031532	A	G	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr13	50087142	rs2247119	T	C	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	50087464	rs5803468	AT	A	245.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.93;ReadPosRankSum=1.334;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:8,23:0.74:31
chr13	50092127	rs66480424	TACTC	T	1783.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	50095127	rs3765526	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	50096127	rs2274277	C	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	50098407	rs144805189	TAAAAC	T	1156.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;QD=42.84;SOR=2.387;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	50100090	rs7322908	T	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	50100320	rs7321952	A	G	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	50100389	rs7323493	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr13	50100627	rs10546233	GTT	G	2003.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	50100637	rs371713260	ATATT	A	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	50100647	rs61960012	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	50100667	rs6561533	G	A	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	50102810	rs1046295	G	A	8103.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr13	50108252	rs7317982	T	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr13	50115669	rs1536195	C	T	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	50121211	rs1570883	G	A	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	50121311	rs3039280	C	CA,CAA	2701.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.421;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;MQRankSum=0.332;QD=21.44;ReadPosRankSum=-1.844;SOR=1.166;set=HC	GT:AD:AF:DP	1/2:9,25,92:0.20,0.73:126
chr13	50121511	rs1570884	A	G	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	50123622	rs3751384	G	C	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	50126382	rs2274278	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	50129615	rs2274284	A	G	5823.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr13	50134358	rs12146924	T	C	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	50141345	rs4942848	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	50205025	rs3803185	T	C	10525.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr13	50237255	rs34505073	G	A	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	50242538	rs76103167	T	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	50242566	rs189477460	T	C	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.84;QD=44.46;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	50242566	.	TA	CG	554	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=23;MQ=51.35;NF=7;NR=9;PP=554;QD=37.9667421789;SC=AAAAATTAGCTAGGCGTGGTG;SbPval=0.42;Source=Platypus;TC=18;TCF=9;TCR=9;TR=16;WE=50242575;WS=50242556;set=Platypus	GT:AD:AF:DP	1/1:2,16:0.89:18
chr13	50242567	rs181532273	A	G	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.14;QD=41.99;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	50242807	rs144094067	T	TA	161.52	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,10:0.83:12
chr13	50244041	rs9535292	T	C	7384.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr13	50260905	rs6561552	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	50296026	rs9535310	T	C	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr13	50296115	rs1127021	C	T	5604.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.198;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.83;ReadPosRankSum=-0.882;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:2,215:0.99:217
chr13	50306823	rs11342957	GA	G	1777.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:5,99:0.95:104
chr13	50366743	rs201124891	A	AG	287.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.77;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	50466911	rs34448316	G	A	9318.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:14,346:0.96:360
chr13	50467124	rs7316930	T	C	10366.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr13	50586051	.	AT	A	102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.93;ReadPosRankSum=-0.455;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:88,23:0.21:111
chr13	50656582	rs2066575	T	A	8136.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr13	51484356	rs2274069	C	T	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	51522081	.	AT	A	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.842;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.774;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr13	51796468	rs7320388	T	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr13	51929375	rs9596506	T	C	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	51953840	rs3818360	C	T	625.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	51956122	rs9526753	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr13	52293532	rs912097	T	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	52351037	rs2296026	C	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	52373814	rs9535761	G	C	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:1,134:0.99:135
chr13	52391341	rs975504	C	T	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	52425515	rs147056819	AGAG	A	6087.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.87;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	52425546	.	CAAG	C	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=0.842;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:190,18:0.09:208
chr13	52425587	rs36141261	A	AT	2435.73	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:32,145:0.82:177
chr13	52482451	rs113880756	G	A	12177.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.004;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.73;MQRankSum=-0.148;QD=23.51;ReadPosRankSum=-0.641;SOR=0.589;set=HC	GT:AD:AF:DP	1/1:1,517:1.00:518
chr13	52492525	rs9596613	A	C	5900.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr13	52492555	rs182365995	G	A	5943.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,225:1.00:225
chr13	52511275	rs200831452	GAA	G	659.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=22.75;SOR=4.294;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chr13	52511362	rs9535795	C	G	5543.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr13	52511606	rs2282057	G	A	11251.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr13	52515354	rs1801249	A	G	5219.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.34;ReadPosRankSum=2.370;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:2,204:0.99:206
chr13	52520627	rs7325983	C	G	3828.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	52523808	rs732774	C	T	6955.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	52524488	rs1061472	T	C	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	52542796	rs2147363	T	G	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	52593352	.	CTT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=-0.674;QD=5.27;ReadPosRankSum=1.803;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr13	52684801	.	TACAC	T	3340.73	.	AC=2;AF=1.00;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr13	52701490	rs3076657	A	ACTT	7564.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	52707751	rs72317694	TCACACACACACACACA	T	3758.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	52725374	rs17069419	C	T	12831.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,471:1.00:471
chr13	52935033	rs9536027	A	G	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	52935203	rs111653634	A	G	556.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=24.21;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	52935261	.	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.65;MQRankSum=0.319;QD=22.19;ReadPosRankSum=1.150;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	52935263	.	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=0.319;QD=22.19;ReadPosRankSum=-0.000;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chr13	52951802	rs9536041	T	C	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	52952575	rs9536042	G	A	11611.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr13	52952680	rs9536043	G	A	14023.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr13	52952928	rs113543720	CA	C	1537.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr13	52958336	.	AAAG	A	652.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.31;ReadPosRankSum=-1.732;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr13	52960409	rs61958012	C	T	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:1,71:0.99:72
chr13	52971718	rs9536062	G	C	8293.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr13	52971893	rs3803264	G	A	9540.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,355:1.00:355
chr13	52972185	.	G	C	1693.77	.	AC=1;AF=0.500;AN=2;DP=290;set=Intersection	GT:AD:AF:DP	0/1:193,95:0.33:288
chr13	52989863	rs1056335	C	T	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	53007899	rs57831032	G	A	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	53010346	rs9536072	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	53010353	.	A	AAC	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=1.381;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr13	53013144	rs61959660	G	A	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr13	53013395	rs61959661	A	G	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	53016687	rs41292818	T	C	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr13	53029858	rs112594976	C	T	7385.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr13	53035665	rs35975899	T	A	12147.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr13	53035783	rs7337054	T	C	9570.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,348:1.00:348
chr13	53035925	rs7335867	A	G	8992.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr13	53036398	rs3803262	A	G	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	53042306	rs138484357	C	CTG	1951.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	53042529	rs79400735	T	G	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	53240884	rs9316580	G	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr13	53282749	rs61959654	G	A	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr13	53313657	rs9536266	C	T	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	53608479	rs2298230	G	A	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	53608632	rs2298231	C	T	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	53608757	rs2298232	T	C	92.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	55748673	rs1572687	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	58299434	rs5803842	G	GA	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=0.833;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:12,55:0.82:67
chr13	60240961	rs9538494	C	T	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr13	60385060	rs10665848	A	ATTAC	2596.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	60582651	rs339540	C	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	60590299	rs2762134	C	T	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	60617060	rs2800294	A	G	153.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr13	60971593	rs9538679	G	A	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.65;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	61041312	rs9538715	G	A	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	61057808	rs9528147	A	C	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	61058724	rs7329723	G	A	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	61084936	rs370448567	CT	C	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.01;ReadPosRankSum=-0.386;SOR=0.324;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr13	61986918	rs3812872	C	A	12331.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr13	61988107	rs4281600	T	G	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr13	61989175	rs3812874	G	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	63745832	rs298898	G	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.01;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr13	70535347	rs41283976	A	T	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=0.693;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr13	70535355	rs9592668	T	A	1572.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	70549636	rs71693665	CTTAAAAAAAT	C	1807.73	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr13	70681305	rs9564649	G	A	5118.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:159,234:0.60:393
chr13	70681873	rs3751428	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:87,45:0.34:132
chr13	72014625	rs11391038	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=3.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.587;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chr13	72038653	rs915052	C	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	72440658	.	TGCCGCC	T	8061.73	.	AC=2;AF=1.00;AN=2;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr13	73284411	rs7931	A	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr13	73293249	.	C	CA	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=1.871;QD=2.10;ReadPosRankSum=2.064;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:62,29:0.32:91
chr13	73301655	rs1465897	A	C	12292.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:1,450:1.00:451
chr13	73301728	rs1465896	T	C	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr13	73302157	rs11350390	CT	C	22905.73	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr13	73302481	rs4885034	G	A	5982.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr13	73309347	rs9543106	C	T	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr13	73329358	rs10887	G	A	22619.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,845:1.00:845
chr13	73337483	rs148253442	G	A	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr13	73343039	rs2196979	C	T	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.946;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	73349359	rs7332388	G	C	7550.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr13	73369642	rs1372000	A	G	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr13	73409508	rs200683940	T	TA	790.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=2.189;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:28,56:0.67:84
chr13	73410236	rs11382594	C	CA	842.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.570;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.537;QD=13.59;ReadPosRankSum=-0.105;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:10,52:0.84:62
chr13	73428092	rs146634064	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:29,7:0.19:36
chr13	73539466	rs11544631	A	G	2973.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:305,171:0.36:476
chr13	73650108	rs148760123	C	CA	980.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=1.827;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:49,60:0.55:109
chr13	73650112	rs9573097	C	A	3199.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.923;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=4.895;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=2.437;SOR=3.119;set=HC	GT:AD:AF:DP	1/1:2,111:0.98:113
chr13	74289799	rs6562780	A	T	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr13	74339104	rs3764134	G	T	14978.77	.	AC=2;AF=1.00;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr13	74420118	rs77377545	G	C	4815.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:180,230:0.56:410
chr13	74518210	rs9573330	G	A	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:306,170:0.36:476
chr13	74992947	.	T	C	3785.77	.	AC=1;AF=0.500;AN=2;DP=572;set=Intersection	GT:AD:AF:DP	0/1:362,209:0.37:571
chr13	74993000	rs953905	G	A	5653.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:175,260:0.60:435
chr13	75860804	rs534538	C	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	75873787	rs2297207	G	A	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	75876389	rs2297208	G	A	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	75880667	rs2297209	G	A	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr13	75884216	rs1062087	C	T	6533.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr13	75884290	rs2297203	G	A	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:30,49:0.62:79
chr13	75887127	rs2274757	T	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=0.735;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,8:0.27:30
chr13	75894015	rs2274758	T	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:35,35:0.50:70
chr13	75898596	rs2297210	C	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:33,29:0.47:62
chr13	75901749	rs2297206	G	T	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	75910909	rs693134	C	A	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr13	75910950	rs9573525	T	G	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.02;ReadPosRankSum=-0.773;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:104,68:0.40:172
chr13	75915215	rs80163254	TAT	CCA	3110.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;JOINED;set=Intersection	GT:AD:AF:DP	0/1:115,83:0.42:198
chr13	75915250	rs35018625	T	TA	2876.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:132,99:0.43:231
chr13	75915859	rs9888477	C	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,18:0.28:64
chr13	75923536	rs3831188	T	TA	96.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr13	75936519	rs7983969	C	G	8698.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr13	76055397	rs9573565	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:62,72:0.54:134
chr13	76055820	rs7327548	G	C	6981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=1.126;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=1.035;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:202,332:0.62:534
chr13	76102137	.	G	GCA	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=-0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.21;ReadPosRankSum=-0.230;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr13	76123901	rs149695719	CGGCGGCGGCGGCGAA	C	838.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:58,25:0.30:83
chr13	76140814	rs56945758	CT	C	1715.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:3,91:0.97:94
chr13	76141091	rs74617651	G	A	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr13	76143572	rs2296146	T	C	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=0.946;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:55,49:0.47:104
chr13	76164313	rs35178906	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=1.181;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr13	76169234	rs7330411	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr13	76210742	rs2224797	A	C	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:62,80:0.56:142
chr13	76334850	rs71434806	C	T	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:160,95:0.37:255
chr13	76379596	rs76261004	G	A	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:73,113:0.61:186
chr13	76395278	rs7334674	G	A	5288.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	76397593	rs4885352	T	A	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr13	76397731	rs4884021	G	A	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr13	76398089	rs7982790	A	C	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr13	76410725	rs2273996	A	G	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr13	76412589	.	TAAA	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=3.108;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-1.388;QD=3.24;ReadPosRankSum=1.612;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr13	76416960	rs1318553	A	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr13	76417101	rs920701	C	T	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr13	76419421	rs3832886	AT	A	2143.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr13	76419522	rs35634098	G	A	954.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-0.907;QD=4.52;ReadPosRankSum=-1.283;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:149,62:0.29:211
chr13	76423248	rs7986131	T	C	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	76427347	rs7988661	C	A	26169.77	.	AC=2;AF=1.00;AN=2;DB;DP=974;set=Intersection	GT:AD:AF:DP	1/1:0,972:1.00:972
chr13	76427403	rs71434812	G	A	25825.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=967;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.76;ReadPosRankSum=0.939;SOR=0.847;set=HC	GT:AD:AF:DP	1/1:2,963:1.00:965
chr13	76427410	rs7988841	C	G	42625.77	.	AC=2;AF=1.00;AN=2;DB;DP=948;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,946:1.00:946
chr13	76429311	rs9573671	G	A	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr13	76429619	rs4885354	C	A	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	76445155	rs9544057	G	C	6748.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr13	76445316	rs9600567	C	T	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr13	76447859	rs117547772	G	A	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:63,89:0.59:152
chr13	76457148	rs7987971	A	G	2741.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	76457183	rs9530477	T	C	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr13	76457395	rs10507837	T	A	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr13	77522725	rs67524409	GACTT	G	7334.73	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:296,201:0.40:497
chr13	77522925	rs588702	T	C	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:56,48:0.46:104
chr13	77527707	rs9530614	A	G	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:282,191:0.40:473
chr13	77565972	rs654196	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:120,66:0.35:186
chr13	77569901	rs605153	G	A	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr13	77574518	rs58575113	TA	T	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.627;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.415;QD=2.07;ReadPosRankSum=-0.197;SOR=1.262;set=HC	GT:AD:AF:DP	0/1:40,24:0.38:64
chr13	77589725	rs599115	A	C	2492.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:178,121:0.40:299
chr13	77644862	rs71749271	GA	G	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-0.365;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:85,25:0.23:110
chr13	77725106	rs9574006	C	A	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:165,102:0.38:267
chr13	77732333	rs3861128	G	A	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.129;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=7.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=1.836;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:31,8:0.21:39
chr13	77738664	rs2274547	A	G	6965.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:247,332:0.57:579
chr13	77739291	rs9318468	A	T	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.885;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.946;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:99,49:0.33:148
chr13	77751892	rs4885445	C	T	4117.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:328,208:0.39:536
chr13	77780665	rs17693337	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr13	77792099	rs374242789	TA	T	411.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-1.470;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:78,45:0.37:123
chr13	77818100	rs35429706	C	CA	1708.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;ClippingRankSum=0.000;DB;DP=546;ExcessHet=3.0103;FS=5.708;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.195;QD=4.22;ReadPosRankSum=-0.156;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:254,151:0.37:405
chr13	77835520	rs11436373	T	TA	643.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=2.594;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.407;QD=4.02;ReadPosRankSum=1.125;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:105,55:0.34:160
chr13	78142653	rs11325667	GA	G	589.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	78146301	rs678047	C	T	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr13	78177082	rs7490669	T	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr13	78178451	rs6563011	C	T	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	78183087	rs9593240	A	C	220.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr13	78183167	rs912293	G	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	78188078	rs8002725	A	G	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:155,81:0.34:236
chr13	78191824	rs4142585	G	T	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	78192207	rs9574090	T	C	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr13	78211386	rs72078326	CAT	C	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr13	78216873	rs1053985	A	G	1860.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:78,90:0.54:168
chr13	78216915	rs2813739	C	T	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.507;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.32;ReadPosRankSum=1.031;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:100,79:0.44:179
chr13	78272267	rs201380414	T	TGG	3868.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	78272276	rs71102772	G	GC	3772.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;MQ=59.88;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	78317054	rs372604248	CT	C	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.948;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.704;QD=1.70;ReadPosRankSum=0.469;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:164,63:0.28:227
chr13	78475313	rs5351	T	C	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	78477674	rs5348	A	G	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr13	79766188	rs2988039	A	G	5674.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:176,259:0.60:435
chr13	79894736	rs3187338	C	T	4841.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr13	79894877	rs71696319	CA	C	1014.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.054;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.918;QD=10.91;ReadPosRankSum=-0.170;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:17,76:0.82:93
chr13	79915389	rs7981067	G	T	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	79916792	rs374223990	T	TA	1795.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	79916973	rs3742118	A	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	79916994	rs3742119	A	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	79927157	rs11341470	CA	C	1007.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr13	79929183	rs9530900	G	A	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	79929326	rs9530901	G	A	11170.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:1,428:1.00:429
chr13	79932617	rs7994560	A	G	1178.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	79940150	rs3831152	CTG	C	3221.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	79940811	rs7327603	T	C	5088.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.11;SOR=1.903;set=HC	GT:AD:AF:DP	1/1:0,181:1.00:181
chr13	79943166	rs10710579	TA	T	763.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:11,53:0.83:64
chr13	79946071	rs369797909	TA	T	1040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.140;QD=8.97;ReadPosRankSum=-0.221;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:29,87:0.75:116
chr13	79946104	rs9545093	A	G	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	79946163	rs7325232	G	C	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	80910786	rs4728	C	A	2142.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr13	80910851	rs11911	A	C	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:55,69:0.56:124
chr13	80911525	rs504122	G	A	7014.77	.	AC=1;AF=0.500;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	0/1:191,307:0.62:498
chr13	83597934	rs2639486	A	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.573;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=0.574;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr13	83598060	rs2807479	C	T	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr13	86369120	rs3825413	C	T	4900.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:184,229:0.55:413
chr13	87045827	rs9513670	T	C	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:81,105:0.56:186
chr13	88270840	rs4036976	CTGT	C	4955.73	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:81,124:0.60:205
chr13	88270860	rs956960	A	G	5412.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:106,152:0.59:258
chr13	92381023	.	CA	C	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=10.503;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-1.784;SOR=0.017;set=HC	GT:AD:AF:DP	0/1:33,12:0.27:45
chr13	92560425	rs1854735	G	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr13	93142312	rs2149060	T	A	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	93142362	rs722178	C	T	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr13	94938785	rs1409174	A	G	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr13	94938808	rs56210803	GAT	G	738.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,21:0.46:46
chr13	94958100	rs10492630	T	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr13	95090692	rs1540979	T	A	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	95096505	rs7339198	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	95097956	rs755684	C	T	15956.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,602:1.00:602
chr13	95227138	rs201674028	AAAG	A	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=1.309;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:20,38:0.66:58
chr13	95230877	rs16949940	G	A	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr13	95243270	rs9301979	G	A	25901.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	1/1:0,992:1.00:992
chr13	95254382	rs9556404	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	95275576	rs4296139	C	G	8991.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr13	95364046	rs1060474	C	G	6697.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:295,306:0.51:601
chr13	95364337	rs2253604	T	G	8234.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:434,399:0.48:833
chr13	95673791	rs3742106	A	C	6471.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:387,323:0.45:710
chr13	95673939	rs9524765	A	G	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:10,214:0.96:224
chr13	95714976	rs1751034	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr13	95715148	rs202097426	AAAAG	A	547.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.609;QD=2.04;ReadPosRankSum=1.058;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:194,74:0.28:268
chr13	95726541	rs1189466	A	G	9711.77	.	AC=1;AF=0.500;AN=2;DB;DP=1075;set=Intersection	GT:AD:AF:DP	0/1:574,496:0.46:1070
chr13	95727780	rs1678339	T	C	3228.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:169,157:0.48:326
chr13	95735604	rs1189437	G	T	2171.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:109,104:0.49:213
chr13	95748384	rs145231996	T	C	2086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=1.179;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:80,95:0.54:175
chr13	95815834	rs11568650	A	G	6047.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:267,286:0.52:553
chr13	95822761	rs11568663	C	T	2972.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:194,144:0.43:338
chr13	95829870	rs1751005	T	C	3924.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	95858686	rs3818493	G	A	2230.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr13	95858704	rs3818494	G	C	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	95858978	rs2274405	T	C	12228.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr13	95858996	rs2274406	T	C	11787.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr13	95859974	rs2274408	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	95860288	rs2274410	C	A	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr13	95861804	rs899494	A	G	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr13	95861981	rs1678403	C	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr13	95862860	rs3046400	AGAGT	A	5929.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr13	95862896	rs899496	A	G	5483.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr13	95863143	rs899497	A	G	6157.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr13	95900172	rs145006616	G	GCACACACACACACACA,GCACACACACACACACACA	1841.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.84;QD=54.17;SOR=3.675;set=HC	GT:AD:AF:DP	1/2:0,11,23:0.32,0.68:34
chr13	95921689	rs367867169	AT	A	210.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.219;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.21;ReadPosRankSum=0.554;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr13	95921690	rs1970476	T	A	51.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.019;ClippingRankSum=-0.000;DB;DP=24;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.98;ReadPosRankSum=-0.583;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr13	95921692	rs1970475	T	A	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=6.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.06;ReadPosRankSum=-0.535;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr13	95921694	rs2389230	T	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.553;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.75;ReadPosRankSum=1.816;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr13	95921696	rs2389231	T	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=1.345;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr13	95953405	rs61974974	G	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:64,90:0.58:154
chr13	96230279	rs1325774	T	G	5234.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:307,271:0.47:578
chr13	96239805	rs11070136	G	A	4171.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:299,211:0.41:510
chr13	96251524	rs4497528	A	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:69,57:0.45:126
chr13	96258410	rs7319952	A	G	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:143,114:0.44:257
chr13	96270202	rs17268561	A	T	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:158,139:0.47:297
chr13	96293523	rs61975171	A	C	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:204,174:0.46:378
chr13	96410115	rs3087339	C	T	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:105,127:0.55:232
chr13	96454126	rs9590329	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:97,104:0.52:201
chr13	96506464	rs61972891	T	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr13	96506596	rs45454901	T	C	6847.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:171,322:0.65:493
chr13	96506664	rs11070154	A	G	2791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.229;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:305,163:0.35:468
chr13	96512989	rs76490575	T	C	681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.394;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.15;ReadPosRankSum=1.658;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr13	96529376	rs10601193	TCTGC	T	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr13	96529571	rs41315036	T	C	2261.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:66,104:0.61:170
chr13	96539977	rs11842395	T	G	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=-0.272;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr13	96539979	rs11842396	T	C	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.35;ReadPosRankSum=-0.272;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr13	96540141	rs9525075	T	C	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	96540143	rs9525076	T	C	3869.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr13	96540204	rs12876018	T	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr13	96578069	rs7992179	T	A	655.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=0.535;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:30,36:0.55:66
chr13	96578189	rs7985727	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr13	96599271	rs7986005	C	T	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:47,34:0.42:81
chr13	96599433	rs9556512	A	C	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=1.434;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:76,44:0.37:120
chr13	96599445	rs9556513	C	T	698.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:64,39:0.38:103
chr13	96624810	rs61972947	T	G	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr13	96636170	rs9562008	G	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr13	96638636	rs816142	A	C	3143.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr13	96641695	rs555120	T	G	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	96705698	rs111814899	C	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:67,74:0.52:141
chr13	97079618	rs9556587	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,18:0.50:36
chr13	97639414	rs9284174	C	T	6281.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:330,298:0.47:628
chr13	97986448	rs16952071	C	T	2136.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:71,95:0.57:166
chr13	98017211	rs3825422	A	G	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr13	98087096	rs3803251	T	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	98629334	rs9517155	G	C	19639.77	.	AC=2;AF=1.00;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	1/1:0,746:1.00:746
chr13	98632349	rs555647	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	98634572	rs11620106	T	A	1279.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	98637917	rs11366582	CT	C	1103.86	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:12,73:0.86:85
chr13	98637931	rs60936969	T	A	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,84:0.99:85
chr13	98640318	rs592246	C	T	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	98640386	rs588144	A	G	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	98645580	rs56411106	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	98650024	rs651241	G	T	2574.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr13	98658358	rs633161	G	A	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr13	98658610	.	ATTTTTTTTTTTTT	A	660.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=16.833;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-0.707;QD=30.03;ReadPosRankSum=1.690;SOR=2.655;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr13	98666549	rs6491395	T	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	98670641	rs528546	G	C	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr13	98829176	rs628778	T	C	23162.77	.	AC=2;AF=1.00;AN=2;DB;DP=892;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,890:1.00:890
chr13	98860660	rs285108	A	G	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.625;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.628;QD=8.31;ReadPosRankSum=-0.805;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr13	98860731	rs60575077	C	CA	254.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.23;ReadPosRankSum=0.872;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr13	98865726	rs2295980	G	A	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,22:0.47:47
chr13	98896776	rs7318267	C	T	1652.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:112,82:0.42:194
chr13	99017533	rs587377	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr13	99061556	rs5806061	C	CT	9701.73	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:12,437:0.97:449
chr13	99063113	rs2291174	A	G	2935.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:88,134:0.60:222
chr13	99076965	rs7984394	A	G	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:56,55:0.50:111
chr13	99090166	rs59023150	TG	T	5760.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	99090168	rs1969794	G	T	5769.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	99092052	rs4772080	G	T	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr13	99093094	rs2146998	T	C	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr13	99098318	rs2274053	C	T	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:173,156:0.47:329
chr13	99098470	rs2274054	C	T	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:91,70:0.43:161
chr13	99098882	rs2281766	A	C	8472.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:472,413:0.47:885
chr13	99100547	rs12261	T	C	3234.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:156,157:0.50:313
chr13	99112468	rs112280830	T	TGCCTGAC	16343.73	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr13	99112680	rs4771305	C	T	18116.77	.	AC=2;AF=1.00;AN=2;DB;DP=674;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr13	99112754	rs4772083	TT	GC	7800.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	99115838	rs56325686	TA	T	3182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;ClippingRankSum=0.000;DB;DP=379;ExcessHet=3.0103;FS=0.498;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.368;QD=9.53;ReadPosRankSum=-0.146;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:99,235:0.70:334
chr13	99115927	rs2296149	A	G	22041.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	1/1:0,843:1.00:843
chr13	99361221	rs35484191	C	CT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=0.545;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chr13	99404743	rs4646208	T	A	5144.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	99404761	rs4646207	C	T	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr13	99447005	rs812808	T	C	7687.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr13	99448441	rs9554522	T	A	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:105,139:0.57:244
chr13	99448623	rs9554524	A	G	3155.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:129,148:0.53:277
chr13	99449579	rs1289314	T	C	15607.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr13	99449755	rs1289315	G	A	2614.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:125,122:0.49:247
chr13	99457431	rs2296984	T	G	5657.77	.	AC=1;AF=0.500;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	0/1:305,280:0.48:585
chr13	99457552	rs7990741	T	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:83,75:0.47:158
chr13	99482030	rs9517459	G	C	2609.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:152,127:0.46:279
chr13	99505632	rs9513497	C	T	10790.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr13	99532622	rs6491460	G	A	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	99534048	rs6491461	G	A	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	99536031	rs9517474	G	A	11991.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr13	99536215	rs2296996	C	T	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.79;SOR=2.253;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	99536220	rs2296997	A	G	5904.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=2.593;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr13	99537202	rs2274641	C	A	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	99537217	rs2274642	G	T	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr13	99538711	rs6491465	C	G	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	99538935	rs6491466	C	G	8237.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr13	99540395	rs1928104	A	G	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr13	99540500	rs2274643	A	G	8303.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr13	99555187	rs35240640	AT	A	3389.73	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:10,170:0.94:180
chr13	99574524	rs7983462	C	T	4030.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	99575775	rs7989935	C	T	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr13	99578265	rs7318788	T	C	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	99630104	rs147408595	C	T	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=3.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.59;ReadPosRankSum=-1.881;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:139,134:0.49:273
chr13	99667982	rs4772168	T	C	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:53,73:0.58:126
chr13	99853443	rs7338947	T	G	10119.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr13	99890849	.	G	GT	422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.737;QD=1.57;ReadPosRankSum=-0.562;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:208,62:0.23:270
chr13	99896625	rs146409182	A	ATATATACACACATATGCATGTGTG	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr13	99948097	rs2230343	A	G	8502.77	.	AC=1;AF=0.500;AN=2;DB;DP=868;set=Intersection	GT:AD:AF:DP	0/1:436,424:0.49:860
chr13	99948178	rs2230342	C	A	5053.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:248,229:0.48:477
chr13	99966516	.	C	CT	639.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=2.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-0.835;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:56,61:0.52:117
chr13	99970429	rs56695114	CT	C	4845.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr13	99992487	rs1927725	T	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:54,61:0.53:115
chr13	100008313	rs7993715	C	G	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:153,124:0.45:277
chr13	100008340	rs72649597	A	G	3170.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:179,156:0.47:335
chr13	100170081	rs142214854	ATCTTTTTTTTAATGTT	A	311.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	100199224	rs3751373	C	T	9862.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,384:1.00:384
chr13	100515161	rs10648017	A	AGACTT	2526.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	100517409	rs7317032	G	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr13	100518400	rs2390354	T	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	100518580	rs3783185	A	G	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr13	100523386	rs3742254	T	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	100537221	rs912283	T	C	9965.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr13	100537232	rs912284	T	C	10620.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr13	100537376	rs912285	G	A	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	100622667	rs71114653	TGGC	T	10749.73	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.54;QD=42.49;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr13	100807434	rs9585365	A	G	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.30;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr13	100807450	rs9585366	C	T	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	100809645	rs35055557	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	100888122	rs538229	A	G	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr13	100888234	rs539158	A	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr13	100921056	rs4306370	A	G	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	100945533	rs9300598	G	A	6574.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr13	100945603	rs8002928	A	G	3291.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	101020695	rs9518061	A	G	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr13	101020926	rs10508043	T	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	101143782	rs4772295	A	G	673.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	101144031	rs4772296	A	G	1452.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	101182211	rs3059677	CGGTGG	C	2007.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	101264633	rs1572641	C	T	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	101264845	rs72661055	T	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr13	101264908	rs60782137	TAC	T	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=-0.637;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr13	101266751	rs370662314	TA	T	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=1.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.013;SOR=0.478;set=HC	GT:AD:AF:DP	0/1:109,31:0.22:140
chr13	101286924	rs1890861	T	C	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	101287340	rs946837	C	T	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr13	101287365	rs946838	T	C	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	101288992	rs3803256	C	T	5850.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr13	101289998	rs7985718	C	A	5283.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr13	101294428	rs9585476	C	G	3186.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	101308796	rs10632502	C	CTT	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.67;ReadPosRankSum=0.200;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,18:0.58:31
chr13	101308836	rs11315434	AC	A	706.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr13	101316313	rs1298168	C	T	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr13	101316378	rs1283208	A	G	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	101318136	rs945962	C	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr13	101321067	rs2791680	T	C	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	101322622	rs1283201	G	C	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	101712426	rs2274085	G	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr13	101717980	rs369621391	GAA	G	1191.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:2,40:0.95:42
chr13	101720300	rs1289556	T	G	9749.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr13	101721029	rs11616341	T	C	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr13	101727043	rs34229756	C	CAG	1490.73	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:79,71:0.47:150
chr13	101727071	rs112963196	CAG	C	2159.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:33,86:0.72:119
chr13	101735026	rs12430032	T	A	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	101736075	rs686141	A	G	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	101753025	rs57703343	GT	G	4358.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr13	101755480	rs9300647	G	T	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr13	101755813	rs7331375	C	A	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	101890040	rs9518352	A	G	248.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr13	102021517	.	ATGTG	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=0.702;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:11,3:0.21:14
chr13	102106276	rs2297700	G	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr13	102227872	rs3916912	C	T	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,281:0.99:283
chr13	102235519	rs3918322	A	G	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	102235764	rs370279713	TA	T	448.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.598;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.442;QD=14.02;ReadPosRankSum=-0.451;SOR=0.301;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr13	102368056	rs1436266	G	T	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr13	102698415	rs7337292	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr13	102698459	rs667685	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr13	103257064	rs35697719	CAT	C	822.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr13	103257297	.	AT	A	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.305;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-0.717;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:74,23:0.24:97
chr13	103271206	rs4576935	G	A	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr13	103275386	rs2230854	T	C	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:2,287:0.99:289
chr13	103275495	rs17507043	C	T	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr13	103282279	rs660832	A	C	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	103282299	rs660811	C	G	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	103289338	rs2274463	C	T	614.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	103290535	rs613926	G	C	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr13	103290574	rs614290	G	A	12356.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr13	103292810	rs634293	G	A	3779.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	103295485	rs3831118	A	AT	1993.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr13	103295551	rs144831383	CTTCT	C	7350.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	103296819	rs35462812	C	CAT	847.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr13	103297435	rs10713633	CT	C	2922.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:11,168:0.94:179
chr13	103301537	rs664660	G	T	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr13	103301619	rs3215841	G	GT	1386.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	103307218	rs673424	C	T	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr13	103307322	rs677248	A	G	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr13	103307360	rs677179	G	A	4197.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr13	103307483	rs672129	G	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	103315948	rs9585959	G	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	103316113	rs7334625	G	A	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr13	103328579	rs665479	G	T	174.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	103328619	rs584710	C	A	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr13	103330718	rs3806	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr13	103339365	rs660207	A	G	10388.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr13	103346806	rs2390760	C	G	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr13	103384824	rs9300756	G	A	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr13	103385015	rs6491707	A	G	8962.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr13	103385299	rs7335290	A	C	5692.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr13	103385798	rs7983175	T	C	7616.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr13	103386116	rs7982465	C	G	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,340:1.00:341
chr13	103386283	rs7982670	A	G	8706.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr13	103388220	rs9300758	A	G	4862.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr13	103391634	rs7322112	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr13	103394003	rs1449707	G	A	8448.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr13	103394613	rs9585986	T	G	7482.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr13	103394716	rs9585987	T	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	103395819	rs1375720	C	T	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr13	103396716	rs6491708	C	G	3203.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	103397583	rs9582626	C	G	7625.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr13	103400083	rs1026158	G	A	14041.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr13	103400729	rs12583104	G	A	6632.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr13	103402522	rs9300760	C	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr13	103402772	rs9284197	T	C	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr13	103410782	rs1375719	T	C	1653.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	103410914	rs12855785	A	T	3258.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr13	103422350	rs118055120	C	T	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr13	103445609	rs11441956	G	GT	848.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr13	103449033	rs199885678	TAAAA	T	127	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	103468958	rs7320687	G	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	103474031	rs2148449	C	T	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr13	103484060	rs2181676	G	A	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	103491223	rs7337774	C	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr13	103491876	rs4771435	A	G	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr13	103506509	rs1535729	A	C	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr13	103511428	rs3918332	G	A	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr13	103514091	rs7982448	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr13	103518769	rs6491716	T	C	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr13	103518844	rs3759500	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	103527849	rs9514066	G	C	8310.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr13	103527930	rs9514067	G	C	6996.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr13	103528337	rs873601	G	A	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	103698363	rs2301157	A	G	1626.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr13	103698630	rs279940	C	T	6174.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr13	103703579	rs8000956	T	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	103705044	rs188096	A	C	15127.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:1,585:1.00:586
chr13	103710571	rs142412008	G	A	3698.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr13	106118612	rs45476401	C	T	3614.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr13	106119204	rs201063832	T	TA	109.92	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,8:0.89:9
chr13	106125088	rs72549480	G	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr13	107145463	rs7995379	G	C	8602.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr13	107165255	rs9520090	C	G	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr13	107862841	rs3751448	T	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr13	108183631	rs912446	A	G	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr13	108938976	rs34506170	CAT	C	126	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr13	109472601	rs2146327	G	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr13	109472849	rs9521065	A	G	2562.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	109472933	rs9514924	T	C	715.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr13	109496928	rs7989802	C	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr13	109550561	rs7322768	A	G	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr13	109700549	rs9521139	G	A	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr13	109700757	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.279;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:77,15:0.16:92
chr13	109717928	rs1431267	A	G	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=25.27;SOR=0.995;set=HC	GT:AD:AF:DP	1/1:0,383:1.00:383
chr13	109793246	rs80260507	G	C	6295.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr13	109793329	rs200595201	C	G	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr13	109793474	rs28705148	T	C	14828.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:0,556:1.00:556
chr13	109793720	rs7986595	A	C	11517.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:2,447:1.00:449
chr13	110408608	rs1865434	C	T	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr13	110435302	rs9583424	T	C	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:8,98:0.92:106
chr13	110435953	rs4773092	A	G	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr13	110436232	rs3742210	G	A	8425.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr13	110807474	rs615742	T	C	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr13	110807496	rs616089	T	C	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr13	110813523	rs2275842	C	T	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.77;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	110813532	rs2275843	G	A	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr13	110817171	rs1816884	G	C	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	110819457	rs652572	A	G	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.74;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr13	110819460	rs1778817	G	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.78;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr13	110819586	rs589985	G	A	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr13	110821844	rs3832901	A	AAC	1184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.810;QD=20.08;ReadPosRankSum=0.360;SOR=1.074;set=HC	GT:AD:AF:DP	0/1:13,46:0.78:59
chr13	110839550	rs536174	T	G	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr13	110843985	rs1373744	T	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr13	110844721	rs2241967	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	110845314	rs685884	G	A	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr13	110847227	rs505050	G	T	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	110850770	rs683309	T	C	1447.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr13	110851014	rs496916	G	C	11608.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,455:1.00:455
chr13	110856085	rs648263	A	G	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr13	110857823	rs482757	C	T	7954.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr13	110857895	rs677877	A	G	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr13	110859690	rs598819	A	G	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr13	110859743	rs598893	C	T	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr13	110861785	rs645114	C	G	3165.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr13	110864225	rs532625	A	T	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.097;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr13	110864396	rs626444	T	C	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr13	110959131	rs12429420	A	G	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr13	110959356	rs9515185	C	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr13	111077197	rs4238272	G	A	4969.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:255,230:0.47:485
chr13	111082157	rs3929758	C	A	745.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr13	111091157	rs9521759	C	A,CCTCCACA	1881.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.718;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=10.607;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.87;ReadPosRankSum=-0.758;SOR=4.752;set=HC	GT:AD:AF:DP	1/2:1,24,38:0.38,0.60:63
chr13	111091995	rs7991229	T	G	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,31:0.48:64
chr13	111098110	rs7489705	C	T	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr13	111098226	rs4103	C	T	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr13	111098338	rs7988186	A	T	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr13	111099045	rs59905747	C	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr13	111099057	rs45612833	G	A	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr13	111099122	rs7326449	G	A	6060.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr13	111099338	rs35275552	T	TA	3031.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;MQRankSum=0.297;QD=22.62;ReadPosRankSum=-2.078;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:3,131:0.98:134
chr13	111102183	rs34734302	A	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:59,79:0.57:138
chr13	111117984	rs3825490	C	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:61,54:0.47:115
chr13	111118580	rs1927352	G	A	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr13	111121483	rs9559814	A	G	2688.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:170,140:0.45:310
chr13	111121620	rs9583500	C	T	1260.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:88,62:0.41:150
chr13	111121717	rs9515229	A	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr13	111132556	rs9521803	C	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	111132820	rs1475438	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr13	111134780	rs3803229	G	A	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr13	111137167	rs1983930	T	C	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr13	111137906	rs9521806	G	A	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr13	111143755	rs413756	T	C	8458.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:2,319:0.99:321
chr13	111145427	.	TG	CA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=3;HapScore=1;MGOF=24;MMLQ=25;MQ=55.88;NF=106;NR=63;PP=2944;QD=20;SC=GACACCCCCATGGGTGAAATA;SbPval=0.24;Source=Platypus;TC=334;TCF=227;TCR=107;TR=169;WE=111145436;WS=111145424;set=Platypus	GT:AD:AF:DP	1/0:165,169:0.51:334
chr13	111145676	rs2391833	G	C	9555.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr13	111153934	rs378601	G	A	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr13	111154058	rs439831	T	A	15084.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,333:1.00:333
chr13	111154061	rs409858	T	C	15300.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,348:1.00:348
chr13	111154160	rs2281968	G	A	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr13	111155363	rs406174	G	A	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr13	111155428	rs401316	C	T	15819.77	.	AC=2;AF=1.00;AN=2;DB;DP=591;set=Intersection	GT:AD:AF:DP	1/1:0,590:1.00:590
chr13	111155711	rs4773198	C	T	7262.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:455,375:0.45:830
chr13	111155773	rs438758	T	C	11342.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.88;SOR=1.665;set=HC	GT:AD:AF:DP	1/1:0,345:1.00:345
chr13	111155773	.	TGGGGCG	CGGGGCA,CGGGGCG	2785	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=4;HapScore=1;MGOF=5;MMLQ=23;MQ=60.0;NF=38,112;NR=85,226;PP=1968,2785;QD=16.4346981696;SC=CTGGACCCACTGGGGCGGTGG;SbPval=0.64;Source=Platypus;TC=338;TCF=112;TCR=226;TR=123,338;WE=111155787;WS=111155763;set=Platypus	GT:AF:DP	0/1:0.36:338
chr13	111155779	rs4773199	G	A	2801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=1.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.28;ReadPosRankSum=0.069;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:172,130:0.43:302
chr13	111156021	rs4773200	C	T	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr13	111156047	rs9284254	C	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr13	111156153	rs9301460	G	A	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:248,168:0.40:416
chr13	111156411	rs414881	G	A	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:79,93:0.54:172
chr13	111156499	rs4771683	C	T	9121.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr13	111156773	rs4771684	A	G	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr13	111158874	rs445348	A	G	19467.77	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr13	111164614	rs422733	T	C	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=6.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.542;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:63,45:0.42:108
chr13	111164628	rs3074455	TAA	T	486.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=-0.670;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:51,25:0.33:76
chr13	111176393	rs419244	A	G	9418.77	.	AC=1;AF=0.500;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	0/1:442,455:0.51:897
chr13	111267758	rs28384426	T	C	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:72,75:0.51:147
chr13	111276726	rs10544782	ATATCT	A	889.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr13	111277810	rs330561	C	A	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr13	111280002	rs3742193	T	C	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr13	111289698	rs3825467	A	G	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:139,127:0.48:266
chr13	111290220	rs9588214	A	G	723.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,36:0.43:83
chr13	111290258	rs77982490	C	T	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr13	111290568	rs41275122	A	G	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:115,132:0.53:247
chr13	111290880	rs330563	G	A	10543.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:490,507:0.51:997
chr13	111291044	rs330564	T	C	4175.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:217,200:0.48:417
chr13	111293585	rs10709696	TG	T	1316.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr13	111293640	rs7998306	G	A	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:24,32:0.57:56
chr13	111294920	rs11414164	G	GC	28954.73	.	AC=2;AF=1.00;AN=2;DB;DP=1155;set=Intersection	GT:AD:AF:DP	1/1:3,1069:1.00:1072
chr13	111298392	rs436462	A	G	14364.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,543:1.00:543
chr13	111315287	rs78317917	C	T	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr13	111315299	rs4622384	T	C	12143.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr13	111350281	rs72661701	C	T	18317.77	.	AC=2;AF=1.00;AN=2;DB;DP=692;set=Intersection	GT:AD:AF:DP	1/1:0,691:1.00:691
chr13	111358488	rs3818496	G	A	5179.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr13	111364877	rs144160325	A	AGGG,AGGGG	762.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.662;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=31.78;ReadPosRankSum=0.248;SOR=4.712;set=HC	GT:AD:AF:DP	1/2:1,10,13:0.42,0.54:24
chr13	111365104	rs12875067	A	G	11393.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr13	111368164	rs7338333	T	G	8638.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr13	111368316	rs9555726	C	T	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr13	111893710	rs57317822	G	A	2092.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:112,102:0.48:214
chr13	111932586	.	G	GT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=0.881;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.526;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:135,27:0.17:162
chr13	111933098	rs2296353	C	G	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr13	111953299	.	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=8.461;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.053;QD=0.54;ReadPosRankSum=-0.289;SOR=1.885;set=HC	GT:AD:AF:DP	0/1:62,14:0.18:76
chr13	111953317	rs145135139	C	T	910.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:29,41:0.59:70
chr13	111953903	rs3742181	T	C	4184.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:203,193:0.49:396
chr13	111955465	rs1555751	T	C	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr13	111968680	rs7991693	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:40,36:0.47:76
chr13	111973342	rs57892141	T	TG	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.473;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.211;QD=11.99;ReadPosRankSum=0.692;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr13	111973353	rs56975726	A	G	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.679;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr13	111980478	rs2479955	A	G	1716.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:86,89:0.51:175
chr13	112278338	rs7992732	G	A	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:130,170:0.57:300
chr13	112278521	rs7992659	C	G	4157.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:176,196:0.53:372
chr13	112297403	rs8000950	C	T	14437.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr13	112324912	rs1105513	T	G	1425.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr13	113032915	rs7324712	A	G	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:37,47:0.56:84
chr13	113032962	rs9550063	G	C	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:85,100:0.54:185
chr13	113052388	rs2296895	A	G	12170.77	.	AC=1;AF=0.500;AN=2;DB;DP=1126;set=Intersection	GT:AD:AF:DP	0/1:542,582:0.52:1124
chr13	113052562	rs2296894	T	C	3945.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:140,161:0.53:301
chr13	113053470	rs10816	T	A	4817.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:216,231:0.52:447
chr13	113055295	rs3742225	A	G	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr13	113140349	rs41288614	A	G	1399.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:130,72:0.36:202
chr13	113153114	rs9549532	T	C	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:79,99:0.56:178
chr13	113158599	rs3742226	A	C	769.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:28,36:0.56:64
chr13	113158861	rs3832905	CATAT	C	2378.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:40,63:0.61:103
chr13	113159187	rs7320173	G	A	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:48,54:0.53:102
chr13	113170683	rs2182268	G	A	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:20,23:0.53:43
chr13	113170951	rs3861729	T	C	3054.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:120,147:0.55:267
chr13	113181415	rs9603905	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:32,54:0.63:86
chr13	113199876	rs9549540	T	C	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:31,37:0.54:68
chr13	113201846	.	ACGTGCATGGGAAAGT	A	586.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,17:0.42:40
chr13	113201852	rs142738218	ATGGGAAAGTCGCGCG	A	827.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.224;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=7.610;MLEAC=1;MLEAF=0.500;MQ=63.93;MQRankSum=1.151;QD=20.69;ReadPosRankSum=0.997;SOR=2.004;set=HC	GT:AD:AF:DP	0/1:18,22:0.55:40
chr13	113201879	rs41288620	C	T	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:31,29:0.48:60
chr13	113202667	rs9550139	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr13	113210292	rs9550146	T	C	1794.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:56,83:0.60:139
chr13	113213494	rs68041328	GGAAAA	G	1475.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=60.88;MQRankSum=2.284;QD=20.50;ReadPosRankSum=-0.794;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr13	113213605	rs3818462	G	T	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:107,92:0.46:199
chr13	113219525	rs3783159	C	T	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:107,71:0.40:178
chr13	113333684	rs7338610	C	T	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:63,69:0.52:132
chr13	113344803	rs3742227	G	A	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:45,24:0.35:69
chr13	113439586	rs11616475	G	T	13302.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr13	113464927	rs41288626	T	A	4528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.016;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:205,221:0.52:426
chr13	113478654	rs7323586	G	C	5234.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:286,244:0.46:530
chr13	113479813	rs9549564	G	A	3177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.60;ReadPosRankSum=0.420;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:178,153:0.46:331
chr13	113479820	rs368865	A	G	10511.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.58;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr13	113505271	rs117359758	A	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr13	113508839	rs9549573	G	C	3130.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:155,143:0.48:298
chr13	113512004	rs7325522	C	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr13	113512331	rs9549575	C	T	1303.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:63,54:0.46:117
chr13	113513682	rs10492684	C	G	5135.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:338,260:0.43:598
chr13	113525952	rs1765767	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr13	113527781	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=24;MQ=59.97;NF=164;NR=80;PP=2962;QD=20;SC=CTGGGTCTTGCGTTTGGTTTA;SbPval=0.5;Source=Platypus;TC=458;TCF=310;TCR=148;TR=244;WE=113527789;WS=113527771;set=Platypus	GT:AD:AF:DP	0/1:214,244:0.53:458
chr13	113530199	rs11616795	G	A	3665.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:226,184:0.45:410
chr13	113534907	rs9577174	T	C	14074.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr13	113536467	rs36048052	G	A	8084.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr13	113563351	rs2993328	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:52,48:0.48:100
chr13	113634091	rs6577024	G	C	4624.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:222,224:0.50:446
chr13	113639671	rs9577407	G	A	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:100,115:0.53:215
chr13	113639869	rs3011543	A	G	11961.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=1.268;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr13	113639872	rs3011542	A	G	11701.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=1.366;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr13	113656216	rs7986677	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:90,97:0.52:187
chr13	113681400	rs3011512	G	T	5196.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:207,239:0.54:446
chr13	113699488	rs3814266	T	C	9006.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:396,440:0.53:836
chr13	113700746	rs77599782	C	T	760.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr13	113717022	rs7982214	G	A	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr13	113728781	rs3814264	G	A	8787.77	.	AC=1;AF=0.500;AN=2;DB;DP=787;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:362,423:0.54:785
chr13	113735335	rs61966406	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr13	113735390	rs494129	T	C	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:96,78:0.45:174
chr13	113739125	rs2281724	C	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr13	113740602	rs2873281	G	A	8844.77	.	AC=1;AF=0.500;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	0/1:394,435:0.52:829
chr13	113740706	rs1745949	A	G	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr13	113742595	rs9324220	C	T	3066.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:99,140:0.59:239
chr13	113742777	rs9549668	C	T	7114.77	.	AC=1;AF=0.500;AN=2;DB;DP=798;set=Intersection	GT:AD:AF:DP	0/1:439,356:0.45:795
chr13	113742805	rs7986589	C	G	26576.77	.	AC=2;AF=1.00;AN=2;DB;DP=1029;set=Intersection	GT:AD:AF:DP	1/1:0,1027:1.00:1027
chr13	113743768	.	T	C	792	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=5;MMLQ=23;MQ=59.34;NF=37;NR=8;PP=792;QD=18.3726936122;SC=TCTCATCCAGTCCGTCCGGGT;SbPval=0.65;Source=Platypus;TC=107;TCF=86;TCR=21;TR=45;WE=113743776;WS=113743758;set=Platypus	GT:AD:AF:DP	1/0:62,45:0.42:107
chr13	113744139	rs4907483	G	A	9632.77	.	AC=1;AF=0.500;AN=2;DB;DP=1135;set=Intersection	GT:AD:AF:DP	0/1:640,495:0.44:1135
chr13	113745402	rs41306043	C	T	7038.77	.	AC=1;AF=0.500;AN=2;DB;DP=773;set=Intersection	GT:AD:AF:DP	0/1:411,357:0.46:768
chr13	113748690	rs7327099	C	T	2177.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:73,94:0.56:167
chr13	113749347	rs368339775	AC	A	17891.73	.	AC=1;AF=0.500;AN=2;DB;DP=1553;set=Intersection	GT:AD:AF:DP	0/1:816,722:0.47:1538
chr13	113749475	rs2146752	G	A	5572.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:268,255:0.49:523
chr13	113760034	rs561241	T	C	2577.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:116,120:0.51:236
chr13	113760228	rs6039	G	A	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:147,117:0.44:264
chr13	113765235	rs2774033	G	A	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:31,35:0.53:66
chr13	113769917	rs569557	G	A	7376.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:301,342:0.53:643
chr13	113770068	rs6042	C	T	15705.77	.	AC=1;AF=0.500;AN=2;DB;DP=1324;set=Intersection	GT:AD:AF:DP	0/1:571,750:0.57:1321
chr13	113771917	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=28;MQ=57.92;NF=31;NR=123;PP=2962;QD=20;SC=CTGGGTGGGTACCACTCTCCC;SbPval=0.48;Source=Platypus;TC=285;TCF=56;TCR=229;TR=154;WE=113771925;WS=113771907;set=Platypus	GT:AD:AF:DP	0/1:131,154:0.54:285
chr13	113772707	rs6041	G	A	9464.77	.	AC=1;AF=0.500;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	0/1:427,462:0.52:889
chr13	113773159	rs6046	G	A	9876.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:357,458:0.56:815
chr13	113776947	rs563964	T	C	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,56:0.50:111
chr13	113783711	rs146988946	G	GGGAGCCTGGGTGAAGA	899.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr13	113792754	rs2251102	T	C	2037.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr13	113792893	rs2026160	C	A	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:64,40:0.38:104
chr13	113793849	rs3211770	G	A	3205.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:163,154:0.49:317
chr13	113801737	rs5960	C	T	7698.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr13	113801843	rs2031184	A	G	7244.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr13	113812962	rs2273971	G	A	3500.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr13	113817240	.	A	ATTCCTGTCACCACCCCCACCCTCCTCCTGCTCAGGTCCCCG	4945.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.842;ClippingRankSum=0.000;DP=488;ExcessHet=3.0103;FS=48.032;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.15;ReadPosRankSum=1.669;SOR=5.523;set=HC	GT:AD:AF:DP	0/1:191,185:0.49:376
chr13	113818708	rs3024731	A	T	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr13	113818817	rs45606038	T	C,TC	13450.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=493;set=Intersection	GT:AF:DP	1/2:0.16,0.83:434
chr13	113818900	rs564081	A	G	11541.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr13	113819005	rs45596441	C	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:47,56:0.54:103
chr13	113833499	rs486407	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr13	113839747	rs515863	C	T	5052.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=470;ExcessHet=3.0103;FS=1.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.80;ReadPosRankSum=1.198;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:223,245:0.52:468
chr13	113852425	rs546686	C	T	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr13	113854560	rs3751411	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:16,24:0.60:40
chr13	113854600	rs3751412	T	C	2871.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr13	113854715	rs3751413	C	T	14623.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr13	113862801	rs9549692	G	A	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr13	113882221	rs34413442	C	CA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=7.075;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.980;QD=5.39;ReadPosRankSum=-0.865;SOR=2.025;set=HC	GT:AD:AF:DP	0/1:26,24:0.48:50
chr13	113888201	rs2146408	T	C	10025.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr13	113889474	rs2287250	C	T	22141.77	.	AC=2;AF=1.00;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr13	113891075	rs2287253	G	A	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	113891359	rs2287254	A	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr13	113899004	rs3932499	C	A	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr13	113900197	rs2302756	G	A	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr13	113917767	rs4907602	T	C	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr13	113951722	rs7983578	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr13	113965002	rs71706094	AT	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.024;QD=0.56;ReadPosRankSum=-0.437;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:207,51:0.20:258
chr13	113965176	rs9577503	C	A	8933.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr13	113978969	rs912010	G	A	5412.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr13	113980198	rs117936998	G	A	11696.77	.	AC=1;AF=0.500;AN=2;DB;DP=1043;set=Intersection	GT:AD:AF:DP	0/1:490,548:0.53:1038
chr13	113999027	.	C	CAAA	282.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;ClippingRankSum=-0.000;DP=36;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.869;QD=18.86;ReadPosRankSum=-1.233;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:7,8:0.53:15
chr13	113999051	rs4406954	C	A	2946.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=27.28;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr13	114018038	rs9549753	C	A	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:48,48:0.50:96
chr13	114174889	rs113656124	T	G	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:184,122:0.40:306
chr13	114240067	rs113638790	CT	C	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.382;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:131,53:0.29:184
chr13	114265305	rs4150729	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr13	114312354	rs9285616	T	G	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr13	114312605	rs58459344	G	GA	4910.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	114312606	rs58758822	T	G	4920.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr13	114322289	rs9796035	A	G	9962.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:1,367:1.00:368
chr13	114323889	rs57719047	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chr13	114323997	rs9796234	T	C	5232.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:262,246:0.48:508
chr13	114325830	.	G	A	9444.77	.	AC=1;AF=0.500;AN=2;DP=1044;set=Intersection	GT:AD:AF:DP	0/1:553,488:0.47:1041
chr13	114435807	rs146696614	A	G	3091.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:172,158:0.48:330
chr13	114453591	.	GTGTGTGTGCATGCC	G	16695.73	.	AC=2;AF=1.00;AN=2;DP=798;set=Intersection	GT:AD:AF:DP	1/1:7,662:0.99:669
chr13	114462517	rs58074269	CTCTCTG	C	2393.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr13	114469434	rs68023809	G	A	9763.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr13	114471900	rs9604527	C	T	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr13	114498362	rs28653123	T	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr13	114502416	rs7400029	T	C	5706.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr13	114503875	rs66696122	GCCTGCGGGAGGTGAGGGGCACCGGGGACCCCCATATCTACACCTGCGGGAGGTGAGGGGCGCTGGGGACCCCCGTATCTACA	G	11320.73	.	AC=2;AF=1.00;AN=2;DB;DP=360;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=31.80;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,356:1.00:356
chr13	114503921	.	C	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=4;HapScore=1;MGOF=8;MMLQ=27;MQ=56.72;NF=72;NR=82;PP=2965;QD=20;SC=TCTACACCTGCGGGAGGTGAG;SbPval=0.5;Source=Platypus;TC=170;TCF=78;TCR=92;TR=154;WE=114503929;WS=114503885;set=Platypus	GT:AD:AF:DP	1/1:16,154:0.91:170
chr13	114503942	.	G	A	1789	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=3;HapScore=1;MGOF=34;MMLQ=28;MQ=55.52;NF=32;NR=46;PP=1789;QD=23.3816822121;SC=GGGCGCTGGGGACCCCCGTAT;SbPval=0.47;Source=Platypus;TC=115;TCF=46;TCR=69;TR=78;WE=114503950;WS=114503932;set=Platypus	GT:AD:AF:DP	1/1:37,78:0.68:115
chr13	114507709	.	CTCCAGCCTGGGTATAAACGCACGCCGGGCCGGGGTTAGT	C	8505.73	.	AC=2;AF=1.00;AN=2;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr13	114507836	rs7323732	A	G	27241.77	.	AC=2;AF=1.00;AN=2;DB;DP=1066;set=Intersection	GT:AD:AF:DP	1/1:0,1062:1.00:1062
chr13	114524056	rs7319527	C	T	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr13	114525261	rs11619074	G	T	4618.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr13	114537517	rs8191974	C	T	3183.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:186,156:0.46:342
chr13	114538460	rs7331124	C	T	5204.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:266,263:0.50:529
chr13	114538717	rs373185949	ACT	A	899.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr13	114540869	rs144814409	G	A	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:28,24:0.46:52
chr13	114542858	rs9604573	G	A	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:128,97:0.43:225
chr13	114542942	rs9604490	C	T	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr13	114619926	.	G	T	1858.77	.	AC=1;AF=0.500;AN=2;DP=210;set=Intersection	GT:AD:AF:DP	0/1:117,93:0.44:210
chr13	114751040	rs71449038	G	A	5558.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr13	114751359	rs10781677	A	G	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr13	114792812	.	A	G	6216.77	.	AC=1;AF=0.500;AN=2;DP=545;set=Intersection	GT:AD:AF:DP	0/1:258,285:0.52:543
chr13	115002097	rs372357906	CT	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=0.816;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:25,22:0.47:47
chr13	115010254	rs3211416	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr13	115012590	.	G	GT	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.470;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.643;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:28,11:0.28:39
chr13	115015966	.	CA	C	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.007;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.567;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:130,52:0.29:182
chr13	115039275	.	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DP=103;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.31;ReadPosRankSum=-1.394;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:81,17:0.17:98
chr13	115039393	rs17291675	C	T	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=4.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=-0.948;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:68,107:0.61:175
chr13	115047700	rs9590410	A	T	9038.77	.	AC=1;AF=0.500;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	0/1:315,427:0.58:742
chr13	115064542	rs2701318	T	C	4277.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:192,218:0.53:410
chr14	19685269	rs376856717	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.70;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	19685446	rs370265762	C	T	41.80	.	AC=1;AF=0.500;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	0/1:1,3:0.75:4
chr14	19685527	.	C	T	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.17;MQRankSum=-0.967;QD=8.80;ReadPosRankSum=-1.282;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr14	20201561	rs4497603	C	T	3375.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:402,194:0.33:596
chr14	20201972	rs4391979	A	C	8268.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:158,338:0.68:496
chr14	20202040	rs8011997	T	A	9991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.455;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.024;QD=21.82;ReadPosRankSum=0.379;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:158,300:0.66:458
chr14	20202045	rs8006842	A	G	3298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.601;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-0.557;QD=6.79;ReadPosRankSum=1.788;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:332,154:0.32:486
chr14	20202389	rs4641652	G	T	1091.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:141,61:0.30:202
chr14	20202554	rs4393497	A	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr14	20215448	rs10498263	C	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chr14	20215501	rs12432072	G	A	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr14	20215561	rs71313488	T	TTCTC	2209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.196;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-9.244;QD=11.27;ReadPosRankSum=-1.272;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:133,63:0.32:196
chr14	20215989	rs17210864	A	G	6735.77	.	AC=1;AF=0.500;AN=2;DB;DP=1177;set=Intersection	GT:AD:AF:DP	0/1:792,382:0.33:1174
chr14	20216298	rs12896533	T	C	17705.77	.	AC=1;AF=0.500;AN=2;DB;DP=1195;set=Intersection	GT:AD:AF:DP	0/1:399,790:0.66:1189
chr14	20216560	rs12435367	C	T	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:159,81:0.34:240
chr14	20228354	rs12889503	A	G	5321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.432;ClippingRankSum=0.000;DB;DP=2176;ExcessHet=3.0103;FS=1.386;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=13.025;QD=2.45;ReadPosRankSum=-5.125;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:1720,454:0.21:2174
chr14	20228424	rs200661363	G	A	1525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.541;ClippingRankSum=0.000;DB;DP=1617;ExcessHet=3.0103;FS=14.215;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-24.201;QD=0.94;ReadPosRankSum=-8.473;SOR=2.055;set=HC	GT:AD:AF:DP	0/1:1391,226:0.14:1617
chr14	20248828	rs2635535	C	T	9841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479;ClippingRankSum=0.000;DB;DP=2119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=2.013;QD=4.66;ReadPosRankSum=-0.219;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:1505,607:0.29:2112
chr14	20249176	rs2815960	G	A	7616.77	.	AC=1;AF=0.500;AN=2;DB;DP=1480;set=Intersection	GT:AD:AF:DP	0/1:1031,441:0.30:1472
chr14	20264562	.	C	A	2813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732;ClippingRankSum=0.000;DP=629;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=54.05;MQRankSum=-1.180;QD=4.47;ReadPosRankSum=0.499;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:448,181:0.29:629
chr14	20265369	rs2489769	C	G	4076.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:88,175:0.67:263
chr14	20344373	rs142226597	CTT	C,CT	1626.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.948;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=0.213;SOR=0.316;set=HC	GT:AD:AF:DP	1/2:20,81,29:0.62,0.22:130
chr14	20345346	rs12883767	A	T	2192.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:227,117:0.34:344
chr14	20404091	rs12885778	G	A	5504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;ClippingRankSum=0.000;DB;DP=1203;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.478;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:854,341:0.29:1195
chr14	20404614	rs34608158	C	A	3735.77	.	AC=1;AF=0.500;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	0/1:502,214:0.30:716
chr14	20404735	rs34394400	C	T	3482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.493;ClippingRankSum=0.000;DB;DP=715;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-0.828;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:499,210:0.30:709
chr14	20444490	rs11158071	C	T	10239.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr14	20470399	rs7493807	G	A	9706.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr14	20482471	rs12590785	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	20501962	rs2775261	G	C	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	20502921	rs2775236	G	A	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	20528207	rs1958715	G	A	1516.96	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:7,59:0.89:66
chr14	20528321	rs1958716	A	G	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:16,222:0.93:238
chr14	20528359	rs1959630	G	T	14352.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=44.30;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	20528362	rs1958717	A	G	7445.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.822;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.899;QD=22.36;ReadPosRankSum=-0.230;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:22,311:0.93:333
chr14	20528448	rs112192573	TCATAGATTTGCTCACTGAC	T	11544.73	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:31,286:0.90:317
chr14	20528505	rs2775253	T	A	9499.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;MQ=60.28;set=Intersection	GT:AD:AF:DP	1/1:17,252:0.94:269
chr14	20528528	rs2775254	G	A	8771.78	.	AC=2;AF=1.00;AN=2;DB;DP=236;MQ=60.32;set=Intersection	GT:AD:AF:DP	1/1:17,219:0.93:236
chr14	20529019	rs1959629	C	T	5603.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:9,149:0.94:158
chr14	20529043	rs1959628	C	G	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:7,126:0.95:133
chr14	20529177	rs1959627	C	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	20665790	rs4981822	T	A	7439.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:18,299:0.94:317
chr14	20665840	rs4981088	G	A	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:13,297:0.96:310
chr14	20665887	rs4981823	G	C	6805.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr14	20666175	rs55781225	C	CA	10014.73	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:20,417:0.95:437
chr14	20692188	rs12891553	T	C	11325.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr14	20692291	rs34693535	C	T	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr14	20692453	rs17211285	G	T	6933.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	20692574	rs17277221	T	C	7547.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr14	20692643	rs17277228	T	C	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr14	20692999	rs11851950	T	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	20698068	rs4981844	G	T	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	20698239	rs1953558	T	C	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr14	20698298	rs1953559	T	G	9036.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr14	20698503	rs192487257	T	C	6982.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.16;ReadPosRankSum=1.283;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:19,270:0.93:289
chr14	20698503	.	TG	CA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=24;MQ=60.0;NF=84;NR=145;PP=2947;QD=20;SC=CCAGAGATCATGAATAGGGTT;SbPval=0.52;Source=Platypus;TC=254;TCF=93;TCR=161;TR=229;WE=20698512;WS=20698493;set=Platypus	GT:AD:AF:DP	1/1:25,229:0.90:254
chr14	20698504	rs1953560	G	A	12577.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	20760066	rs1953549	T	A	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr14	20763446	rs1953551	T	C	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	20764585	rs1953552	A	C	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:8,184:0.96:192
chr14	20767618	rs2318864	G	A	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	20767706	rs945459	C	T	2026.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	20769870	rs3825766	G	A	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	20770036	rs3742945	T	C	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	20784117	rs12889262	A	G	525.79	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:2,22:0.92:24
chr14	20824181	rs3093930	T	C	6710.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr14	20836923	.	GCA	G	120.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr14	20854734	rs945011	A	G	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	20896857	rs7140768	C	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	20897064	rs7145318	C	T	7321.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr14	20898308	rs17242648	C	T	6739.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:8,246:0.97:254
chr14	20903349	rs1713408	T	C	9401.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr14	20903906	rs8017603	C	T	3517.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	20916958	rs938883	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	20916987	rs938882	G	A	4202.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	20917442	rs938881	A	T	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	20919551	rs3120068	C	T	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	20919623	rs3120067	T	C	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	20919667	rs3120066	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	20919712	rs3120065	C	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	20920043	rs1320150	C	T	229.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	20920250	rs2275007	T	C	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	20920340	rs2275006	A	G	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.96;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	20920360	rs3215948	A	AG	774.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=35.22;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	20920749	rs1878703	C	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	20978531	rs2319198	G	A	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	21052259	rs1429539	T	C	5830.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:17,238:0.93:255
chr14	21074397	rs34721081	G	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	21074427	rs75294609	C	A	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:12,153:0.93:165
chr14	21108748	rs11621507	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	21108748	.	GC	AT	617	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=2;HapScore=1;MGOF=16;MMLQ=27;MQ=59.38;NF=17;NR=0;PP=617;QD=39.4392867566;SC=AGCTGAGATCGCGCCACTGCA;SbPval=1.0;Source=Platypus;TC=22;TCF=18;TCR=4;TR=17;WE=21108757;WS=21108741;set=Platypus	GT:AD:AF:DP	1/1:5,17:0.77:22
chr14	21108749	rs11621774	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	21108802	.	C	CTCA	498	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=20;HapScore=3;MGOF=25;MMLQ=26;MQ=53.91;NF=19;NR=2;PP=498;QD=23.8571428571;SC=CTCTCTCTCTCAAAAAAAAAA;SbPval=0.57;Source=Platypus;TC=33;TCF=30;TCR=3;TR=21;WE=21108810;WS=21108792;set=Platypus	GT:AD:AF:DP	0/1:12,21:0.64:33
chr14	21108803	rs36051923	A	T	210.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.671;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.615;QD=12.40;ReadPosRankSum=2.019;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr14	21108804	rs34416209	A	C	210.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-0.615;QD=12.40;ReadPosRankSum=1.817;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:6,11:0.65:17
chr14	21109170	rs11628297	T	A	6306.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	21109278	rs11627438	A	T	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr14	21109385	rs11622969	C	T	9115.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr14	21109671	rs11627574	A	G	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	21109726	rs11622794	G	A	4987.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	21109859	rs11156622	T	C	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	21238798	rs3827907	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	21250366	rs7156801	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	21360344	rs2233860	G	C	10033.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;MQ=59.36;set=Intersection	GT:AD:AF:DP	1/1:2,398:0.99:400
chr14	21388397	rs12147654	C	T	7215.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	21458131	rs2741733	G	A	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	21460160	rs2741737	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	21463430	rs2741739	G	T	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	21463474	rs2783801	G	A	2402.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	21467913	rs2234632	T	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	21468156	rs2149666	T	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	21486137	rs1243445	G	C	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	21486483	rs117662786	C	A	9961.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:1,369:1.00:370
chr14	21488046	rs1243448	G	C	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	21490125	rs1243449	A	C	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	21526044	rs12435011	T	C	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	21526079	rs12437266	C	T	6075.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	21542753	rs1243472	G	A	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	21555066	.	GA	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.843;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=9.316;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.698;QD=1.46;ReadPosRankSum=-1.354;SOR=2.200;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr14	21623010	rs8007993	T	C	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr14	21623290	rs7145814	T	C	5737.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:15,231:0.94:246
chr14	21623489	rs45462402	C	T	3814.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:7,146:0.95:153
chr14	21623836	rs4982419	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:18,159:0.90:177
chr14	21624197	rs10135366	T	C	664.78	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:4,26:0.87:30
chr14	21699069	rs8016099	A	C	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:13,166:0.93:179
chr14	21702445	rs3215705	TA	T	1668.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:4,64:0.94:68
chr14	21770730	rs6571751	A	G	4739.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:9,185:0.95:194
chr14	21778717	rs72160728	AAAT	A	1078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.549;QD=34.80;ReadPosRankSum=0.736;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:3,28:0.90:31
chr14	21778792	rs1957414	T	C	1569.85	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:8,69:0.90:77
chr14	21790190	.	ACTTCGGGACC	A	2973.50	.	AC=2;AF=1.00;AN=2;DP=83;set=Intersection	GT:AD:AF:DP	1/1:4,73:0.95:77
chr14	21796784	rs3748361	G	C	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr14	21821821	rs3736824	A	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:6,63:0.91:69
chr14	21825924	rs3762156	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	21826718	rs3762157	T	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	21828520	rs927412	T	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	21829129	rs3762158	C	G	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	21829404	rs1543494	T	C	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.46;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr14	21829470	.	CTT	C,CTTTTTT	183.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;QD=20.41;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:0,5,4:0.56,0.44:9
chr14	21830635	rs1983768	C	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	21831052	rs10138699	T	C	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.95;SOR=1.149;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	21831112	rs10146717	G	A	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	21831692	rs10139379	T	A	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	21833147	rs2295866	G	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	21834815	rs66530934	C	CTTTT	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.67;QD=42.70;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	21836400	rs8008670	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	21838160	rs2181125	A	G	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	21838781	rs4982445	C	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	21859536	rs3762159	T	C	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	21860360	rs1998332	G	A	6232.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	21861211	rs7152833	C	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	21864124	rs10134108	C	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	21869705	rs113076568	C	CT	751.80	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:6,42:0.88:48
chr14	21871653	rs8022395	C	T	4873.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	21874068	rs7155123	G	C	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	21930361	rs60977608	TA	T	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=6.023;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.475;QD=0.46;ReadPosRankSum=-0.260;SOR=1.957;set=HC	GT:AD:AF:DP	0/1:52,17:0.25:69
chr14	21930596	rs10143000	G	A	4486.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	21936762	.	GA	G	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=3.007;QD=1.25;ReadPosRankSum=-1.166;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:55,19:0.26:74
chr14	21944955	rs17516362	G	C	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:16,159:0.91:175
chr14	21945415	rs2282046	A	G	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:8,118:0.94:126
chr14	21960424	rs59860769	TG	T	588.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.31;ReadPosRankSum=-0.752;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:3,26:0.90:29
chr14	21967133	rs1061027	C	A	4107.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:18,171:0.90:189
chr14	21967438	rs3168880	G	A	5959.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:5,223:0.98:228
chr14	21967916	rs1139130	A	G	11134.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:21,449:0.96:470
chr14	21971729	rs2242526	C	G	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:15,160:0.91:175
chr14	21991626	rs1263810	C	G	7354.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:9,283:0.97:292
chr14	21993498	rs1263811	G	A	4994.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	22037905	rs8009501	G	A	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	22038162	rs17197261	A	C	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:8,125:0.94:133
chr14	22038450	rs11626669	G	A	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:16,205:0.93:221
chr14	22038659	rs17792778	T	C	5748.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	22038915	rs4982462	A	G	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	22070146	rs10134340	C	T	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:11,149:0.93:160
chr14	22070509	rs11157069	G	A	7645.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:20,297:0.94:317
chr14	22070595	rs35103338	AC	A	6732.87	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:19,200:0.91:219
chr14	22090208	rs8016939	A	G	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	22090594	rs1063365	C	G	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	22133648	rs2874103	G	A	10684.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr14	22133997	rs970382	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	22167296	rs6572018	G	C	7355.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr14	22192106	rs926027	A	G	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:2,48:0.96:50
chr14	22217356	rs2075477	G	A	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	22218051	rs2075478	C	T	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:4,40:0.91:44
chr14	22236771	rs11623408	C	T	2324.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:2,88:0.98:90
chr14	22237127	rs760008	C	T	2696.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.25;ReadPosRankSum=-1.361;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:9,107:0.92:116
chr14	22237187	rs4329837	C	T	3900.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.50;ReadPosRankSum=-0.021;SOR=0.547;set=HC	GT:AD:AF:DP	1/1:10,156:0.94:166
chr14	22265500	rs34668860	G	A	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,38:0.95:40
chr14	22279817	rs7156201	G	A	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:7,110:0.94:117
chr14	22293510	rs2178782	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	22293554	rs35339724	G	GC	3030.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	22315479	rs7151170	G	A	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;MQ=59.55;set=Intersection	GT:AD:AF:DP	1/1:14,174:0.93:188
chr14	22320728	rs2017224	T	C	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:4,79:0.95:83
chr14	22320876	rs2017238	A	G	8182.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:18,337:0.95:355
chr14	22321124	rs2017263	T	C	3464.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:7,136:0.95:143
chr14	22321261	rs2017432	C	T	2154.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.563;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.969;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.80;ReadPosRankSum=1.554;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:4,53:0.93:57
chr14	22321269	rs2072609	T	C	2074.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.382;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=2.653;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=39.15;ReadPosRankSum=0.072;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr14	22321331	rs12892111	G	A	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr14	22322168	rs760003	A	G	848.78	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:4,35:0.90:39
chr14	22322369	rs11626323	T	C	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:5,95:0.95:100
chr14	22322411	rs11629404	G	C	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:5,74:0.94:79
chr14	22322523	rs11629446	G	A	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:3,56:0.95:59
chr14	22322563	rs11620886	C	T	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:5,113:0.96:118
chr14	22322690	rs12878216	G	A	8646.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:23,355:0.94:378
chr14	22322794	rs12879611	C	T	2519.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:6,94:0.94:100
chr14	22322856	rs12884453	T	C	848.78	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr14	22386484	rs10138404	A	G	12467.81	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=0.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.78;ReadPosRankSum=1.942;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:23,307:0.93:330
chr14	22386489	rs10140867	T	A	12315.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.571;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=1.876;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=38.85;ReadPosRankSum=1.616;SOR=0.939;set=HC	GT:AD:AF:DP	1/1:20,297:0.94:317
chr14	22386659	rs10149013	G	A	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:12,175:0.94:187
chr14	22392250	rs17182937	C	T	456.81	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr14	22392283	rs28501628	G	A	815.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,33:0.94:35
chr14	22392304	rs34365759	G	A	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:1,44:0.98:45
chr14	22392366	rs12437316	C	T	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:4,80:0.95:84
chr14	22392499	rs12435124	T	C	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:6,78:0.93:84
chr14	22392626	rs10140810	A	C	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:8,130:0.94:138
chr14	22392703	rs8021861	G	C	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:8,152:0.95:160
chr14	22409517	.	A	ATC	285.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr14	22409571	rs2178779	A	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	22409771	rs4982531	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-0.656;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:71,13:0.15:84
chr14	22433866	rs17182972	C	T	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	22458695	rs956037	A	G	3240.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	22466017	rs2280763	T	C	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	22470693	rs5807105	T	TA	5557.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	22470894	rs200273819	G	GA	1075.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	22470913	rs34215246	CT	C	593.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	22509188	rs4982545	T	C	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	22539108	rs2272547	C	T	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.62;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	22539116	rs2272548	G	A	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=1.079;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	22565073	rs12897143	G	A	2985.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	22573582	rs2075498	A	C	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr14	22580570	rs1040301	C	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	22580762	rs11628824	G	A	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	22591821	rs8018887	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	22600863	rs3811291	G	A	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	22670643	rs2075495	G	A	2253.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	22689740	.	CAA	C	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=7.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.77;ReadPosRankSum=0.903;SOR=2.541;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr14	22690209	rs2272551	A	C	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	22694777	rs2242544	A	G	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	22694926	rs2075496	C	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	22695084	rs4982579	C	T	4586.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	22695128	rs12889091	A	G	3612.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	22892139	rs75422358	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	22924141	rs11625456	A	C	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	22942890	rs2254272	G	T	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	22947814	rs227858	G	A	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	22948471	rs227859	T	C	7116.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr14	22952088	rs227861	G	A	4723.73	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	22957488	rs1483971	G	T	3761.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	22958350	rs3833810	ATGCC	A	2460.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	22963632	rs11372266	G	GC	383.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	22963646	rs226985	T	C	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	22964840	rs137998884	T	TG	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	22964880	rs226986	A	C	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	22965118	rs11334443	TC	T	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	22965144	rs11334442	AC	A	698.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	22972622	rs226990	A	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	22972783	rs5807141	AC	A	9354.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr14	22974150	rs11324184	TC	T	6559.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	22975476	rs3751470	A	G	1580.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	22975756	rs376102541	GCA	G	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.371;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr14	22976790	rs170543	C	T	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	22978335	rs226997	C	T	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.94;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	22978451	rs11443893	G	GC	2791.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	22978577	rs226999	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	22979847	rs5807144	G	GA	651.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.701;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr14	22982069	rs11444527	A	AG	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	22984499	rs227027	C	T	1162.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	22984500	rs144430862	G	GGTT	1153.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	22984559	rs72677519	C	T	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	22985463	rs227029	G	A	1479.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	22985487	rs11453171	A	AC	1251.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	22988022	rs227009	C	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	22988748	rs227010	G	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	22989292	rs3811199	A	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	22990844	rs11624650	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	22990930	rs11380759	A	AT	5269.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	22993278	rs5807151	A	AG	1522.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	22994810	rs33919257	T	TC	104	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	22998590	rs5807161	AG	A	4925.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	22998619	rs5807162	AC	A	3957.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	22999179	rs11412657	T	TC	4745.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	22999202	rs11412658	A	AG	5803.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	23000185	rs227004	C	T	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.068;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	23002265	rs11289756	GC	G	1103.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	23005041	rs5807163	A	AG	7765.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr14	23006663	rs11396434	G	GC	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23006674	rs1154157	G	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	23009291	rs1263637	G	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	23011096	rs1263639	T	A	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	23012873	rs56158321	C	A	92.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.45;QD=18.58;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	23012926	rs11627600	T	C	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	23013878	rs56031439	C	T	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	23014062	rs1263641	G	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	23014106	rs7153643	C	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	23018665	rs1263653	C	G	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	23019657	rs1263658	C	G	1295.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	23020638	rs15795	T	C	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	23020688	rs11462449	G	GC	10187.73	.	AC=2;AF=1.00;AN=2;DB;DP=282;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr14	23020820	rs5807168	G	GC	11271.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr14	23020825	rs3699	G	C	11437.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	23020919	rs3700	C	T	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	23020919	.	CGG	TGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=1.0000;HP=2;HapScore=1;MGOF=31;MMLQ=24;MQ=60.0;NF=90;NR=90;PP=2947;QD=20;SC=CTCTAGGTCCCGGAGAATGTT;SbPval=0.51;Source=Platypus;TC=186;TCF=91;TCR=95;TR=180;WE=23020929;WS=23020909;set=Platypus	GT:AD:AF:DP	1/1:6,180:0.97:186
chr14	23020921	rs3701	G	C	9709.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	23020970	rs3702	G	T	4058.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	23025758	rs10873025	G	A	51.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	23025932	rs12888861	A	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	23026369	rs33982989	C	CG	738.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	23044002	rs7621	G	T	1404.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	23058084	rs1051101	A	G	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	23072194	rs8023110	G	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23074881	rs17120310	T	C	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	23078969	rs140776429	C	CT	165.50	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr14	23079730	rs1242933	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	23102626	rs11846290	G	A	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	23102784	rs1753429	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	23102882	rs1681596	C	A	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	23102896	rs1681597	A	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	23102969	rs1753430	G	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	23103040	rs3829405	C	T	3719.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	23103282	rs3751481	T	C	8350.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr14	23103347	rs3751482	T	C	14609.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.41;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	23103354	rs3751483	AC	GT	14498.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	23103743	rs56305436	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	23236524	rs8572	C	T	7501.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr14	23239880	rs1957502	G	A	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23240328	rs8786	T	A	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr14	23240713	rs148216086	T	TAGC	17956.73	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr14	23242828	rs1061040	T	C	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	23245301	rs3850290	T	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	23286343	rs10130537	T	A	1636.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.94;QD=45.47;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	23286350	rs111507412	T	TATTTTTTA	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.68;QD=44.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	23286528	rs150800938	TTTTTA	T	2263.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	23291924	rs11625306	C	T	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	23299135	rs1135641	G	T	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	23299286	rs4982685	T	C	5821.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	23300095	rs9646148	T	G	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	23302585	rs12050397	T	A	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	23306048	rs1042703	C	T	14621.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr14	23311042	rs17879412	CT	C	1512.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	23311044	rs57542488	T	C	1521.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23312594	rs1042704	G	A	8082.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr14	23314675	rs911912	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	23315331	rs743257	T	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	23342735	rs144635209	CT	C	316.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.752;QD=1.43;ReadPosRankSum=-0.213;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:162,59:0.27:221
chr14	23371055	rs1127066	G	C	9638.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr14	23371255	rs61680322	G	GGGC	8779.73	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:22,362:0.94:384
chr14	23373986	rs1043209	G	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	23374116	.	T	C	3885.77	.	AC=2;AF=1.00;AN=2;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	23374435	rs2295680	G	A	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr14	23374862	rs2295682	C	T	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr14	23377612	.	CT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.971;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.270;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-1.788;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:33,15:0.31:48
chr14	23391533	rs144411999	C	CACAA	2109.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	23391913	rs8007089	T	C	2062.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	23394007	rs1956880	T	C	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	23394069	rs1956881	A	C	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	23394374	.	TTAA	T	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.192;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.69;ReadPosRankSum=1.430;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr14	23394375	rs147925144	TAA	T	44.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.438;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=0.230;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	23396680	rs12589539	T	C	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	23415990	rs11414358	C	CT	112.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.159;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:12,13:0.52:25
chr14	23416252	rs2008951	C	G	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	23424186	rs2016392	A	G	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	23426182	rs2273626	C	A	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr14	23496860	.	G	GA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=1.372;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr14	23504238	rs4144360	G	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	23511357	rs4981456	G	C	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	23512466	rs72684308	T	G	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	23518592	rs11626296	C	A	284.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	23518791	rs2295689	A	G	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.96;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	23518918	rs11623976	T	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr14	23523244	rs11625828	C	G	2110.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	23524137	rs11418548	T	TG	1913.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.341;QD=25.86;ReadPosRankSum=-0.562;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:3,71:0.96:74
chr14	23530454	rs74565147	G	A	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr14	23530622	rs60168438	T	C	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	23530908	rs56402910	C	T	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.32;QD=25.49;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	23530949	rs112350903	A	G	1788.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.78;QD=42.59;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	23530956	rs111242807	T	G	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.43;QD=44.89;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	23531358	rs45547532	C	T	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	23531758	rs45466096	G	A	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	23532535	rs78674032	G	A	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	23532577	rs75499906	C	T	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	23532865	rs57315948	A	G	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	23533201	rs77184349	C	A	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=7.168;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	23533204	rs74998426	C	G	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.23;SOR=7.328;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	23548787	rs34870944	C	CGTGAAT	5604.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	23549319	rs1885097	A	G	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	23549379	rs941719	CG	GA	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	23549785	rs3811182	T	C	8793.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr14	23550126	rs4982727	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	23550887	rs717984	C	A	5583.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	23562832	rs2273395	A	T	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	23571671	rs4444236	A	T	7271.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr14	23572776	rs148655160	T	TAAAACAAAAC	1962.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	23573521	rs17198981	T	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	23574095	.	GGCA	G	1792	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=1;HapScore=1;MGOF=12;MMLQ=23;MQ=61.18;NF=3;NR=34;PP=1792;QD=48.5945945946;SC=GACTAGTGGCGGCAGCAGCAG;SbPval=0.72;Source=Platypus;TC=49;TCF=5;TCR=44;TR=37;WE=23574105;WS=23574085;set=Platypus	GT:AD:AF:DP	1/1:12,37:0.76:49
chr14	23574112	rs57331962	CA	C	4264.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.280;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=6.573;MLEAC=2;MLEAF=1.000;MQ=61.20;MQRankSum=0.529;QD=40.23;ReadPosRankSum=1.581;SOR=0.381;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr14	23574114	rs55686792	GCA	G	4264.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=6.573;MLEAC=2;MLEAF=1.000;MQ=61.21;MQRankSum=0.529;QD=40.23;ReadPosRankSum=1.524;SOR=0.381;set=HC	GT:AD:AF:DP	1/1:2,104:0.98:106
chr14	23574116	.	A	G	1245	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=1;HapScore=1;MGOF=20;MMLQ=23;MQ=61.28;NF=42;NR=41;PP=1245;QD=15.4189302717;SC=CAGCAGCAGCAGCAGCAGCAG;SbPval=0.5;Source=Platypus;TC=86;TCF=45;TCR=41;TR=83;WE=23574124;WS=23574106;set=Platypus	GT:AD:AF:DP	1/1:3,83:0.97:86
chr14	23596320	rs761874	A	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	23598952	rs7157021	A	G	6148.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,239:0.99:241
chr14	23600662	rs12436035	G	T	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	23607271	rs1569951	C	T	2803.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	23609916	rs10151002	A	T	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	23612489	rs2273394	C	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	23624583	rs8011016	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	23744826	rs67447855	TTCC	T	1584.73	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:11,71:0.87:82
chr14	23746269	rs1057119	C	G	4146.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	23777374	rs910332	A	G	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	23816998	rs12896494	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	23826822	rs2231809	C	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	23830042	rs2231798	T	C	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	23830048	rs2231797	T	G	4859.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.42;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	23842017	rs7145531	C	T	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	23842040	rs7145551	C	T	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	23844979	rs79877597	C	A	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr14	23845244	rs3811178	G	A	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	23846482	rs138828400	C	T	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	23848311	rs723840	C	T	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	23851874	rs178636	A	G	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=1.821;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	23851882	rs10135780	C	A	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	23852651	rs35182223	T	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	23853629	rs8006357	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	23854324	rs178638	A	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	23854352	rs178639	A	T	238.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:2,14:0.88:16
chr14	23855569	rs178640	A	G	2788.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	23855849	rs2071634	C	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.74;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	23859610	rs28730771	C	T	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	23872666	rs434273	T	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	23892645	.	AACACAC	A,AAC	1926.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.41;SOR=2.078;set=HC	GT:AD:AF:DP	1/2:1,18,37:0.32,0.66:56
chr14	23991105	rs223122	G	A	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	23997110	.	CT	C	60.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.70;MQRankSum=-0.157;QD=7.62;ReadPosRankSum=1.150;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	24000990	.	C	CT	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=1.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.394;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:94,39:0.29:133
chr14	24033027	rs12897422	G	A	6156.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr14	24429093	rs11158474	A	C	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	24436381	rs33966071	GA	G	4138.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.77;MQRankSum=-1.200;QD=19.61;ReadPosRankSum=0.680;SOR=0.646;set=HC	GT:AD:AF:DP	1/1:7,204:0.97:211
chr14	24439132	rs373068733	G	A	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr14	24476433	rs148889809	C	G	213.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.64;QD=30.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	24476689	.	T	TGG	534.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.88;QD=28.14;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	24512997	.	C	CA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.377;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.122;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr14	24525634	rs4982851	C	A	18490.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr14	24525782	rs4982852	A	G	11037.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr14	24526287	rs7161473	G	C	8400.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr14	24527220	rs4982853	C	T	14454.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,565:1.00:565
chr14	24529209	rs61564890	C	T	10390.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr14	24529260	rs58283036	C	T	13201.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr14	24529890	rs1951635	A	G	4537.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	24531641	rs960266	G	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	24534781	rs12590548	G	A	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	24540710	rs372732697	GC	G	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	24542458	rs3742497	T	A	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	24543808	rs2070343	G	C	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr14	24543873	rs2025256	G	A	8120.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr14	24545366	rs2070342	T	C	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	24545835	rs45621931	C	T	12266.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr14	24545984	rs2070345	G	C	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	24563339	rs4982857	A	G	2111.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.223;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	24567498	rs3021119	A	C	9556.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr14	24614361	rs7146672	T	G	7777.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	24624741	rs2295979	C	G	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	24625031	rs4982862	C	G	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	24635589	rs111232493	C	CT	377.92	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:5,24:0.83:29
chr14	24646406	rs10690822	G	GGAA	4873.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	24647522	rs3736840	G	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	24647814	rs1885711	T	C	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	24647957	rs1885710	C	T	13260.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr14	24649835	rs2273911	T	C	4991.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	24650047	rs7145633	A	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	24652107	rs34130297	A	AG	7443.73	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:2,238:0.99:240
chr14	24653523	rs11550452	G	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	24653954	rs7146310	G	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	24654489	rs2025258	T	C	4762.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	24656251	rs2295978	C	T	13127.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr14	24657407	rs6573607	T	G	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	24659408	rs67843857	ACT	A	802.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	24662177	rs10583	C	T	15091.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr14	24686480	rs149980708	TTTG	T	697.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	24701598	.	ACC	A,AC	4149.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.593;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=36.40;ReadPosRankSum=-0.446;SOR=1.798;set=HC	GT:AD:AF:DP	1/2:8,24,82:0.21,0.72:114
chr14	24701604	.	C	T	1887.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.929;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=22.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-0.337;SOR=5.327;set=HC	GT:AD:AF:DP	0/1:32,82:0.72:114
chr14	24701605	.	C	T	224.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=29.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.535;SOR=0.002;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr14	24701705	rs17794752	G	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	24710819	rs5807249	CA	C	803.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.640;QD=9.24;ReadPosRankSum=-1.161;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:22,65:0.75:87
chr14	24718379	rs41294726	TCTCCGGGAGCCCTGGACTCCCC	T	3058.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	24718515	rs2229463	G	A	9517.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr14	24728294	rs1126432	G	T	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	24734645	rs2180196	G	A	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	24735624	rs2877612	A	G	9887.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr14	24736027	rs14193	G	A	3302.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	24736961	rs729421	T	C	1797.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.066;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	24737203	rs941502	A	T	1884.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	24738379	rs59227799	T	C	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr14	24739363	rs58050348	A	AG	3097.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:5,114:0.96:119
chr14	24740272	rs78807053	G	A	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	24760808	rs1131941	C	T	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	24769663	rs11158632	T	G	3745.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:1,147:0.99:148
chr14	24769849	rs113258190	A	AGAG	3727.52	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:12,151:0.93:163
chr14	24771080	rs4374085	T	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	24771101	rs4366641	C	T	623.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	24771137	rs4247000	G	A	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	24771256	rs4247001	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	24771285	rs4280164	G	A	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	24772922	rs4982895	C	T	5965.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	24773387	rs2144494	T	C	11230.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr14	24776769	rs11158635	G	T	3317.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	24793600	rs1884366	G	A	6292.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	24793647	rs6573722	T	C	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	24794440	rs17184689	T	G	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	24795231	rs67156008	CCA	C	11744.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	24795237	rs55970272	T	C	11937.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	24795258	rs11622863	C	T	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	24799024	rs1109152	G	C	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	24799287	rs1109153	A	T	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:1,171:0.99:172
chr14	24799578	rs12436417	C	G	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	24801635	rs1950502	A	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	24802263	rs8003158	A	G	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	24803956	rs1124644	A	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	24838621	rs1955915	C	T	15042.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	1/1:1,558:1.00:559
chr14	24839165	rs2228233	C	T	9499.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr14	24846757	rs2243891	A	G	6235.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr14	24846961	rs10362	G	T	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	24882373	rs3818251	G	A	1823.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	24882440	rs4982909	G	C	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	24882805	rs10146609	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	24883887	rs8017377	G	A	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	24887302	rs201911127	CA	C	649.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	24887462	rs3814811	T	C	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	24900231	rs3825588	G	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	24901276	rs7151995	G	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	24901433	rs17795094	C	T	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	24905533	rs2277488	G	A	6769.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	24905548	rs2277489	G	A	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr14	24909281	rs1043839	C	T	3250.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	24909362	rs1043831	T	C	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	24909475	rs3211056	C	G	7376.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	24909731	rs2273628	C	T	9263.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr14	24910210	rs712487	C	A	5151.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	24910317	rs10668100	C	CTT	2833.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	24910846	rs11628143	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	24910876	rs11158703	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	24910973	rs11625819	TT	GA	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.52;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	24911116	rs11158704	C	T	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	24911169	rs11158705	C	T	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	24911764	rs1956903	G	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	24911852	rs12897925	C	G	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	24911947	rs372943109	T	C	15266.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,588:1.00:588
chr14	24970942	rs4600392	A	G	3929.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.92;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	24975435	rs5249	G	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	24975509	rs1885108	T	C	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	25043068	rs1885597	T	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	25044712	rs1957523	C	T	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	25045589	rs12878578	A	G	272.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	25076906	rs20545	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.74;QD=25.68;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	25078914	rs1957526	A	C	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	25100110	rs8192919	G	A	250.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	25100247	rs2236337	T	C	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	25100282	rs2236338	A	G	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	25100933	rs6573911	C	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	25101548	rs1126639	G	A	112.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.80;QD=22.58;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	25101589	rs11539752	G	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.36;QD=27.44;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	25101629	rs10909625	T	C	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.51;QD=24.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	25101706	rs10873219	G	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.37;QD=26.66;SOR=0.986;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	25101878	rs8192918	C	CT	7303.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	25102056	rs9671454	G	C	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	25103414	rs2273844	G	A	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	25287095	rs854398	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	25287224	rs8007336	C	T	3888.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	25288227	rs749594	T	C	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	25288513	rs872978	C	T	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	25288648	rs872979	T	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	25288687	rs2282034	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	26939474	rs1245213	T	A	55.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	28733843	rs10135219	A	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.23;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	28733847	rs10145670	G	A	1494.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.52;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	29261043	.	C	A	807.77	.	AC=2;AF=1.00;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	30047580	rs2273815	C	T	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.203;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	30047690	rs11365023	CA	C	116.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.68;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	30066929	rs2230505	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	30066976	rs3783299	A	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	30068194	rs2273813	T	G	4524.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.185;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.138;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.15;ReadPosRankSum=0.319;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,172:0.99:173
chr14	30103441	rs1191599	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	30125660	rs6571317	A	G	5280.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr14	31355096	rs1045644	C	G	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	31380191	rs3736742	T	G	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	31420047	rs3736743	T	C	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.996;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	31535603	rs6571386	G	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	31538939	rs7150619	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	31538984	rs7155228	C	G	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	31549745	rs11621299	T	G	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	31582380	rs1315794	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	31597685	rs7157007	C	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	31787579	rs149793070	ATTAT	A	3131.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=43.50;SOR=1.394;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	31790886	rs28396248	T	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr14	31790917	rs17097814	A	G	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	31864300	rs7142126	T	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	31864485	rs7141532	G	C	7957.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	31897390	rs117059945	T	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	32047217	rs7142098	T	C	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr14	32123347	rs4981874	A	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	32295772	rs17379143	T	A	1430.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	32296018	rs1540425	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	32315901	rs8006872	A	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	32319233	rs10132352	G	A	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.14;SOR=2.256;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	32319241	rs8009753	T	G	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=2.107;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	32319488	rs8009002	C	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	32414145	rs1278926	C	A	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	32414386	rs1278927	C	A	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	32414463	rs1278928	T	C	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	32476068	rs2378955	G	A	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	32563640	rs8004384	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	33015014	rs7150894	G	A	8220.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,319:1.00:319
chr14	33046388	rs1950703	A	G	8647.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	33046471	rs768787	T	G	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	33068608	rs17506750	C	T	4101.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	33242863	rs2273163	T	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	33292743	rs2239647	A	C	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	33293122	rs1051695	A	G	8824.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	33293531	rs4647899	T	A	3616.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	33294042	rs2057121	G	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:2,86:0.98:88
chr14	34243477	rs8019077	T	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	34263034	rs61497449	TAA	T	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;QD=25.22;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:3,42:0.93:45
chr14	34395148	rs3832940	GA	G	3700.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,145:0.99:147
chr14	34985645	rs7797	G	A	6478.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	34993859	rs111420332	A	ATGTGTGTG,ATGTGTGTGTG	1634.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=95;set=Intersection	GT:AF:DP	1/2:0.50,0.45:78
chr14	34993863	rs61981524	A	G	4229.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;MQRankSum=0.000;QD=41.88;ReadPosRankSum=0.144;SOR=0.324;set=HC	GT:AD:AF:DP	1/1:1,100:0.99:101
chr14	34998705	rs12147949	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	35045136	rs34357905	G	GT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=1.420;QD=2.86;ReadPosRankSum=0.878;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr14	35050586	rs4403967	G	T	255.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	35062166	rs12435717	T	C	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	35062312	rs12432539	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.12;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	35073261	rs77834149	GA	G	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.264;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.640;QD=1.10;ReadPosRankSum=-0.158;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr14	35075022	rs7151774	G	T	3755.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	35099099	rs11847568	A	G	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	35182348	rs35515423	GA	G	568.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:3,34:0.92:37
chr14	35183888	rs117211470	C	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	35222623	rs3742371	T	C	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	35242700	rs3818801	C	T	290.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	35242828	rs2275145	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	35243006	rs2275146	G	A	393.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	35263858	rs45547237	C	A	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	35779397	rs33988739	CT	C	463.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.456;QD=12.53;ReadPosRankSum=-0.482;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:4,33:0.89:37
chr14	36004075	rs1958260	A	G	4674.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	36044337	rs61622892	G	GA	219.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=-1.290;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:3,16:0.84:19
chr14	36044417	rs10133473	T	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	36096255	rs34349314	G	GA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.600;QD=9.84;ReadPosRankSum=-1.224;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:7,20:0.74:27
chr14	36121087	rs35892589	CA	C	358.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	36147012	rs1957830	C	T	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	36153177	rs2274068	T	C	3606.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.59;QD=26.14;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	36231816	rs11847872	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	36240374	.	T	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.847;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=-3.022;QD=6.60;ReadPosRankSum=-1.605;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr14	36244815	rs7142261	C	A	139.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	36298932	rs10146494	G	T	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	36300895	rs34375843	T	G	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	36768276	rs4900833	T	C	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=1.306;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	36781037	rs7154340	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	36789729	rs3168891	T	G	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	36789775	rs2899849	A	T	6289.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	36789795	rs11558802	G	A	6207.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	36840650	rs3742592	A	T	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.33;QD=26.08;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr14	36840695	rs3742593	A	G	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,284:0.99:286
chr14	36944188	rs1012914	G	A	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	36988928	rs149047715	A	AAG	2936.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chr14	37051427	rs11624339	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	37051634	rs35669843	G	C	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	37131993	rs12883298	G	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	37132048	rs12882923	A	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	37135753	rs4904210	G	C	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	37140504	rs8004187	C	T	222.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	37153163	rs1884217	A	G	2721.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	37153185	rs10132292	T	A	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	37194681	rs201263151	AAAATAAATAAAT	A	1180.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	37203642	rs5807904	TA	T	3159.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	37203697	rs10135196	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=25.78;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	37344229	rs5807914	A	AG	5076.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	37344275	rs712384	C	T	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	37838604	rs35277854	C	CA	343.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	38062018	.	A	C	633.77	.	AC=2;AF=1.00;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	38165784	rs960787	A	G	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	38205027	rs1570399	T	C	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	38206818	rs4901157	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	38207008	rs11439106	A	AT	500.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.45;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	38207018	rs17107021	A	T	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	38218872	rs17768594	T	G	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	38222291	rs4901176	G	C	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	38256944	rs12586423	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	38260089	rs7153624	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	38264358	rs969446	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	38265344	rs1951639	T	A	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	38295646	rs10483494	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	38679473	rs2228497	C	T	12007.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr14	39502539	rs11418467	G	GA	683.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	39502626	rs11283010	A	AAATAGAAC	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	39511952	rs3837584	CT	C	1052.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	39512122	rs4902326	T	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	39514231	rs1884384	T	A	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	39517691	rs4902344	T	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	39524614	rs11301994	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.09;ReadPosRankSum=1.345;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr14	39543508	rs12164875	T	C	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	39543814	rs147995893	T	TAAG	966.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	39545199	rs17108797	A	G	8242.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	39554893	rs66970820	TAC	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.803;QD=1.16;ReadPosRankSum=-1.001;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chr14	39556185	rs8018720	G	C	3673.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	39565403	rs3818163	T	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	39583481	rs2277458	A	G	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	39587348	rs10136536	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	39591082	rs10132073	A	G	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=-0.040;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr14	39602849	.	C	CT	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.203;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=5.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-1.581;SOR=0.479;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr14	39605542	rs9322993	T	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	39620788	rs8003485	A	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	39620936	rs8003807	C	T	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	39623533	rs12147991	T	C	1316.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=1.287;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	39627695	rs9322994	C	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	39627747	rs761804	A	G	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	39644498	rs1061583	G	A	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	39645863	rs2252040	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	39645921	rs3215670	G	GC	368.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	39650234	rs2180792	A	T	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	39651193	rs532	A	G	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	39703324	rs7141840	A	G	6709.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	39703498	rs7143646	T	C	3493.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	39716201	rs11845046	A	G	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	39722023	rs10134365	G	C	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	39736680	rs7140561	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	39748480	rs7158558	G	A	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	39760393	rs2274399	A	G	134.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.26;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	39763111	rs956108	G	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	39773639	rs2274398	G	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	39783814	.	G	GTTTTT	85	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.6273;HP=19;HapScore=3;MGOF=6;MMLQ=28;MQ=58.47;NF=3;NR=1;PP=85;QD=22.0;SC=GAGTTCTGGAGTTTTTTTTTT;SbPval=0.84;Source=Platypus;TC=8;TCF=5;TCR=3;TR=4;WE=39783823;WS=39783804;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr14	39784004	rs75318507	GTA	G	780.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.55;ReadPosRankSum=-0.098;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:2,36:0.95:38
chr14	39784038	.	GTGTA	G	263	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=28;MQ=59.22;NF=1;NR=23;PP=263;QD=11.0833333333;SC=GTGTGTGTGTGTGTATATATA;SbPval=0.45;Source=Platypus;TC=40;TCF=1;TCR=39;TR=24;WE=39784050;WS=39784028;set=Platypus	GT:AD:AF:DP	1/0:16,24:0.60:40
chr14	39784042	rs2415540	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:7,34:0.83:41
chr14	39784965	rs10150863	G	T	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	39796048	rs36031495	GT	G	1381.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	39818028	rs1140952	A	G	5164.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	39818222	rs7156249	G	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	39856043	rs10146207	G	C	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	39871159	rs36065920	AT	A	1120.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	42355771	rs721222	C	T	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	42355811	rs77016987	T	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	42360633	rs6572117	T	C	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	42997963	rs9323070	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	42998026	rs10148466	T	C	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	44975511	rs45478391	G	A	4990.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	45571012	.	C	CT	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-1.441;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:36,19:0.35:55
chr14	45658024	rs61746943	C	T	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	45693648	rs35223850	G	A	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	47310983	rs11844549	T	C	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.46;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	47314873	rs149291885	AT	A	1054.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	47315127	rs1388567	G	A	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	47341131	rs2933208	C	G	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	47528470	rs8009302	T	C	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	47530845	rs7147741	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	47687187	rs8011854	A	C	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.04;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50175792	rs11157703	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	50195679	rs4301946	A	G	3389.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	50199337	rs60013005	A	AT	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr14	50199375	rs10146753	A	C	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	50241258	rs4499141	A	C	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	50244835	rs4900949	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	50245374	rs6572613	C	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	50247290	rs4900952	G	T	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	50251369	rs10143621	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	50251888	rs8009346	C	T	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	50280577	rs3126194	T	C	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;MQ=57.88;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	50280688	rs3126195	T	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	50298153	rs11365862	AT	A	549.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	50298962	rs3100906	T	A	2993.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	50299051	rs56170989	CT	C	407.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr14	50300310	rs3100904	A	G	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.80;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50319327	rs3126160	T	C	7451.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr14	50319499	rs3100887	G	T	4415.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	50459609	rs10134002	T	C	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	50459673	rs10134096	T	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	50469628	rs7155104	C	A	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr14	50472405	rs6572635	G	A	3455.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	50474062	rs11623184	C	G	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	50477578	rs8012757	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	50477634	rs8012384	A	G	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	50477643	rs4900978	G	C	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.44;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	50477811	rs12589730	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	50555664	rs2883738	G	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	50585574	rs10658395	C	CA	373.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.67;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	50596862	rs3759597	T	C	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50611845	rs2064667	C	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	50612401	rs1014879	T	C	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50612414	rs726797	C	T	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50616878	rs2229869	G	A	5433.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	50623657	rs3736759	G	A	3449.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.522;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.54;ReadPosRankSum=1.664;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:6,100:0.94:106
chr14	50623679	rs3736760	G	A	3818.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.503;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.536;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.31;ReadPosRankSum=1.486;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:7,119:0.94:126
chr14	50623683	rs3736761	A	G	3818.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.393;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.536;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.31;ReadPosRankSum=1.561;SOR=0.432;set=HC	GT:AD:AF:DP	1/1:7,119:0.94:126
chr14	50626836	rs4900992	C	T	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	50641347	rs10782418	T	G	3519.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	50647251	rs28699670	T	A	166.22	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=-2.157;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr14	50647490	rs28734119	G	A	251.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	50666263	rs1955924	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	50670965	rs1075537	G	C	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	50704331	rs4901000	C	T	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	50778816	rs2275591	A	C	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:1,387:1.00:388
chr14	50786004	rs12433794	A	G	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	50788213	rs2275592	C	T	4724.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	50789101	.	A	AATAC	206	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=1;HapScore=2;MGOF=5;MMLQ=23;MQ=61.34;NF=5;NR=1;PP=206;QD=48.0064173955;SC=GGATCTCACTAATTTATCTTC;SbPval=0.66;Source=Platypus;TC=6;TCF=5;TCR=1;TR=6;WE=50789109;WS=50789091;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	50789578	rs8017316	G	C	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50792273	rs8003113	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	50798743	rs4901016	G	A	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	50799126	rs7161563	G	C	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	50799338	rs7141289	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	50801102	rs7141402	G	A	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	50802727	rs7148089	A	C	7947.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr14	50802840	rs7148292	A	G	8919.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr14	50808802	rs7142237	G	T	924.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	50809873	.	C	CTTTTT	77.37	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	50809895	rs2226054	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr14	50824839	rs11157737	G	A	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	50824954	rs11157738	T	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	50825033	rs11570816	T	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	50828838	rs10137638	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	50844367	rs59930863	G	GA	2402.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	50844856	rs1890978	A	G	1432.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	50845231	rs7151046	C	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	50863716	rs10136595	C	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	50877491	rs1265878	C	A	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	50929282	rs202076633	CTAAGT	C	2664.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	50929508	rs11624731	C	A	4082.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	50942047	rs12717408	C	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	50949196	rs11364906	TA	T	414.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	50971446	rs7146431	C	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	51096610	rs3080579	G	GTTCTT	1242.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	51097536	rs2934692	G	A	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	51107452	rs871643	T	C	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	51107737	rs4075253	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	51196142	rs2984274	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	51206021	rs3015485	A	G	4968.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	51208236	rs76858548	T	TGTA	3653.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	51223106	rs2295846	G	T	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	51223789	rs2073347	C	T	7533.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	51224374	rs12882191	T	G	7272.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr14	51224658	rs2073348	T	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr14	51225132	rs2073349	G	T	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	51226439	rs12892462	C	G	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	51228682	rs6572694	G	A	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	51230431	rs150650334	CTT	C	1024.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr14	51237701	rs17793018	A	G	5458.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr14	51239067	rs8020503	C	G	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	51245666	rs7143959	T	C	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	51289873	.	G	GT	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=-0.128;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:90,19:0.17:109
chr14	51289874	rs1547077	G	T	1786.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.24;ReadPosRankSum=-0.027;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:21,89:0.81:110
chr14	51290141	rs9672090	A	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	51297448	rs201889202	G	GC	372.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.67;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	51338875	rs11850408	A	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	51344584	rs10672040	C	CAAA	1202.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.59;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	51347023	rs12889998	T	C	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	51347107	rs2185300	G	A	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	51348281	rs34965747	C	CTT	240.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=9.63;ReadPosRankSum=-0.313;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr14	51353493	rs7158183	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	51355517	rs10144606	C	A	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	51382358	rs1890701	T	C	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	51710732	rs45564035	G	T	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.014;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	52165083	rs6572784	T	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	52182081	rs731715	T	A	10402.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr14	52186966	rs2277495	G	A	13970.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr14	52294397	rs6572795	G	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	52381114	rs1253685	T	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	52383228	rs11322270	GA	G	1470.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:6,82:0.93:88
chr14	52465460	rs1151570	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	52471017	rs34688526	G	GAAAT	2390.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	52474721	rs1476284	C	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	52478315	rs1051069	A	G	1857.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	52480965	rs35387228	G	A	4904.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	52494092	rs28663441	G	C	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	52495375	rs7144352	C	T	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	52496231	rs35706797	C	T	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	52496275	rs12887495	C	A	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	52496387	rs2273430	C	A	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	52496465	rs34199367	C	CAGAT	2413.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	52496519	rs34357454	G	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	52505360	rs753051	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	52505375	rs753050	A	G	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	52505717	rs34552350	T	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	52505771	rs2029978	TT	AG	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	52505811	rs2029976	C	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	52507429	rs3742536	A	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	52509101	rs1982963	G	A	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	52509131	rs2273433	G	A	3876.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	52509483	rs56834750	TG	CA	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	52509501	rs3818186	T	C	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	52520853	rs904059	A	G	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr14	52527082	rs71121681	GAAAA	G	1620.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=41.56;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	52527096	rs71426497	A	G	830.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.927;MLEAC=2;MLEAF=1.000;MQ=60.25;MQRankSum=0.394;QD=26.80;ReadPosRankSum=-2.060;SOR=0.193;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr14	52534985	rs75651404	C	G	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	52534997	rs7151874	T	C	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	52535387	rs984051	A	C	3235.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	52536512	rs1497082	T	C	6122.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr14	52957731	rs369712294	GA	G	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.433;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr14	53098902	rs762063	G	A	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	53100760	rs11157925	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	53110384	rs4898762	T	C	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	53130507	rs17125636	T	C	4434.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	53133036	rs12885338	T	C	1496.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	53197042	rs2277493	G	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	53325090	rs6572868	C	T	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr14	53326454	rs3818453	C	A	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr14	53345266	rs2357946	G	C	6318.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	53345378	rs2357947	G	A	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	53513478	rs10599915	AAG	A	5590.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	53522324	rs5808701	T	TA	822.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	53525392	rs915436	C	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	53529669	rs4898778	A	T	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.83;SOR=1.138;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	53539471	rs875663	A	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	53619463	rs2358188	G	A	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	53619480	rs140904345	T	TGCCGCC	5063.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	53619544	rs2358189	G	A	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	54417522	rs17563	A	G	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	54418986	rs2761880	T	C	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	54880484	rs4251646	C	G	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	55154053	rs11626473	C	T	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	55168673	rs1022754	A	G	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	55218161	rs2295820	A	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	55221345	rs911612	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	55227103	rs12879706	C	T	4787.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.19;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	55241531	.	CAAAA	C,CAA	914.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.482;QD=20.33;ReadPosRankSum=-0.130;SOR=1.445;set=HC	GT:AD:AF:DP	1/2:8,16,21:0.36,0.47:45
chr14	55255673	rs11431	C	T	10912.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr14	55473949	.	T	TA	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.665;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-1.042;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr14	55493350	rs1187878	T	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	55493408	rs1201378	T	C	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	55612006	rs71659941	TA	T	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.274;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=11.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=1.339;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:38,15:0.28:53
chr14	56100160	rs10135907	G	T	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	56108033	rs2341890	G	A	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	56111102	rs10131087	A	C	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr14	56126456	rs7160678	C	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	56755425	rs34574403	C	CA	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:1,21:0.95:22
chr14	56958173	rs1889382	C	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	56958247	rs12893562	C	T	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	56958328	rs12894026	G	A	2934.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	57046829	rs2275025	C	A	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	57052511	rs3737171	G	T	5554.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	57070501	rs10782433	A	G	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	57072203	rs3818777	T	A	122.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	57092038	rs2274706	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	57099859	rs1041316	G	A	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	57101682	rs913742	A	G	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr14	57116979	rs1958530	A	G	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	57271127	rs2277499	G	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	57672540	rs3742577	T	C	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	57672715	rs3742578	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	57676330	rs1804820	G	T	4617.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	57676511	rs10143527	T	A	5173.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.48;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	57676515	rs10131287	C	T	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	57684713	.	T	G	253.77	.	AC=1;AF=0.500;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr14	57702687	rs3736904	C	T	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	57704232	rs1980783	T	C	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	57711181	rs9323303	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	57713754	rs2038861	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	57735954	rs7152744	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	57741550	rs1189899	A	G	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	57866623	rs2152360	A	G	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	57876265	rs11620639	G	A	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr14	57938124	rs1152531	C	T	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	57938260	rs1152530	T	C	1538.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	57942425	.	TA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.081;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.18;ReadPosRankSum=-0.112;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	57945689	rs1152525	G	A	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	57948380	rs1152522	T	C	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.067;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	57957654	rs1203339	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.98;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	57957664	rs1203338	T	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.91;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	58036494	rs2297113	G	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	58038544	rs725048	T	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	58056257	rs1190313	G	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	58060862	rs17724076	G	A	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	58471355	rs2295139	T	C	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	58478873	rs3837616	GA	G	388.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	58563694	rs2273442	G	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	58598112	.	CT	C	277.75	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	58598357	rs45465593	C	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	58600107	rs2180520	T	A	182.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.990;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=-0.426;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr14	58605790	rs3829765	G	A	4556.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	58678057	rs17832891	G	A	6831.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	58690427	rs34387083	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=0.638;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:69,17:0.20:86
chr14	58758279	rs149972156	TAC	T	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.14;ReadPosRankSum=1.193;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:273,35:0.11:308
chr14	58831142	rs1051858	A	G	1695.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	58832019	rs62621193	G	A	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	58869510	rs7153357	T	C	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	58875135	.	C	CA	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=7.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=-0.472;SOR=0.232;set=HC	GT:AD:AF:DP	0/1:67,35:0.34:102
chr14	58907006	rs138818880	TTC	T	206.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-1.440;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:64,18:0.22:82
chr14	58907825	rs71107948	AT	A	33.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	58917225	rs1748970	C	G	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	58917454	rs1748971	G	A	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	58920240	rs1748975	A	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	58923395	rs1743721	G	A	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	58926527	rs1748980	C	T	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	58932772	rs1743716	A	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	58934371	rs1632390	G	A	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	58937416	rs1748986	T	C	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr14	58953617	rs1743702	T	C	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	58953746	rs1617510	C	G	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	58954588	rs5808973	T	TA	1765.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	59781977	rs11347467	CT	C	7373.73	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr14	59789586	rs8021976	A	G	5169.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr14	59790745	rs61984496	G	A	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	59790813	rs6573250	C	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	59792874	rs17096091	C	T	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	59797115	rs941883	A	G	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	59797235	rs941884	A	G	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	59797457	rs2146011	T	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	59797876	rs61264169	A	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	59798238	rs17096105	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	59798473	rs2146012	C	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	59814502	rs941886	C	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	59820780	rs10713024	AT	A	333.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.000;QD=9.82;ReadPosRankSum=-0.224;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr14	59834048	rs10130669	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	59931840	rs3742645	G	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	59931931	rs1752428	T	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.85;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	59939727	rs8660	T	C	6701.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	59941143	rs8013894	A	G	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	59942953	rs10634233	T	TCAAC	629.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	59946099	rs1752436	T	C	5036.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:8,201:0.96:209
chr14	59950417	rs1268584	T	G	5663.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	59951278	rs10140007	T	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr14	59953379	rs1253109	A	T	1261.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	59961970	rs200511858	TTG	T	854.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,47:0.96:49
chr14	59965429	rs1271507	T	C	2090.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	59965705	rs1271508	A	C	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	59977606	rs11305995	CA	C	1475.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	59978366	rs10635523	A	ATG	6440.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	59992258	rs1956366	G	T	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	59992284	rs1956365	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	59993663	rs8011271	A	G	178.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	59998301	rs2145042	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	59998310	rs2145041	G	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.83;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	60004844	rs4261431	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	60031996	rs1980580	G	A	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	60032046	rs1980579	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr14	60034840	rs982862	G	C	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	60043422	rs4898996	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	60063472	rs6573275	A	G	4151.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	60071972	rs1950787	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	60072023	rs1950786	G	A	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	60411567	.	TAC	T	51	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=2;MGOF=4;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=51;QD=20.0;SC=ACATATATAATACACACACAC;SbPval=1.0;Source=Platypus;TC=15;TCF=3;TCR=12;TR=3;WE=60411576;WS=60411557;set=Platypus	GT:AD:AF:DP	0/1:12,3:0.20:15
chr14	60444652	rs219328	A	T	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	60451770	rs219341	G	A	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.44;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	60451816	rs219342	G	A	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	60468661	rs219369	C	T	993.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	60483598	rs219388	C	T	174.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	60484931	rs219391	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	60485240	rs219392	G	A	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	60498579	rs17834334	C	A	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	60498876	rs219409	C	T	255.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	60519920	rs95425	C	T	3354.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	60530107	rs61994053	C	T	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	60530160	rs201841893	TA	T	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.512;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr14	60574539	rs12465	A	G	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	60581673	rs35459418	CT	C	1942.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.258;QD=20.03;ReadPosRankSum=1.283;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:2,95:0.98:97
chr14	60581863	rs219314	G	A	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr14	60581935	rs150687	C	T	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr14	60582053	rs150688	G	A	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	60587879	rs11408436	C	CT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.697;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr14	60615920	.	G	C	257.77	.	AC=1;AF=0.500;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	0/1:34,15:0.31:49
chr14	60616914	.	CA	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.445;QD=1.10;ReadPosRankSum=-0.607;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:78,28:0.26:106
chr14	60712515	rs8018093	G	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	60750349	rs4899009	C	A	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	60750365	rs8012816	C	T	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	60752196	rs10653822	A	ATGCG	143	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	60921673	rs1262175	T	C	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	60923783	rs11625921	C	T	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	60928201	rs1956549	G	A	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	60932569	rs10529202	AACACACACACACACACACACAC	A	1960.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	60935281	rs12878738	C	T	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	60944959	rs11845369	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	60945203	rs11158285	G	A	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	60975956	rs1956558	T	C	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	60976537	rs33912345	C	A	12247.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr14	60978071	rs1061108	C	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	61118783	rs4899014	C	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	61124940	rs10143202	A	G	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr14	61285352	rs973063	A	G	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	61445967	rs7142228	A	G	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	61448510	rs2296924	A	G	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	61449167	rs2296923	T	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	61449328	rs976272	T	A	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	61451329	rs2182985	G	A	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	61451589	rs2149303	C	T	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	61453739	rs33922839	C	CT	3269.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	61453887	rs200167514	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-1.551;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr14	61497147	rs1465146	A	T	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	61497285	rs1465145	T	C	939.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.73;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	61509924	rs2296921	T	C	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	61788816	rs45582331	C	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	61789318	rs1886466	C	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	61915751	rs2296273	G	A	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	61952429	rs1536016	T	C	6920.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	61995673	rs2463117	C	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	61995691	.	C	CGTGT	564.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.30;ReadPosRankSum=-1.280;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr14	61997226	rs1088680	C	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	61997393	rs1088679	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	62037297	rs798792	C	A	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	62204748	rs372062450	TA	T	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.900;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr14	62205175	rs10138153	T	C	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	62208005	rs4902080	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	62211578	rs60361955	CGTGTGT	CGT,C	362.74	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:9
chr14	62212675	rs4902082	C	T	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	62213848	rs2057482	T	C	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	62213929	rs5809121	A	AT	579.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	62233806	rs1254677	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	62462766	rs8019076	T	C	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	62550877	rs2353778	G	A	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	63174616	rs7161127	T	C	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	63174960	rs4902176	C	T	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	63269317	rs12588427	T	C	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	63779846	rs5809192	G	GA	3295.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	63784407	rs11382440	A	AG	12717.73	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr14	63863560	rs61995001	C	T	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	64066302	.	CT	TG	45.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.392;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=16.943;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-8.846;QD=0.34;ReadPosRankSum=-1.324;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:126,10:0.07:136
chr14	64066326	.	C	T	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=5.575;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-6.895;QD=1.98;ReadPosRankSum=-0.738;SOR=1.325;set=HC	GT:AD:AF:DP	0/1:186,24:0.11:210
chr14	64066328	.	C	T	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.012;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=5.563;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-6.877;QD=3.00;ReadPosRankSum=-0.647;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:185,24:0.11:209
chr14	64066340	.	A	G	1061.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=1.398;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-6.945;QD=4.52;ReadPosRankSum=-2.040;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:197,38:0.16:235
chr14	64066352	.	T	A	1222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-7.334;QD=4.81;ReadPosRankSum=-0.046;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:213,41:0.16:254
chr14	64066363	.	G	A	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317;ClippingRankSum=0.000;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-8.262;QD=4.80;ReadPosRankSum=0.571;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:228,49:0.18:277
chr14	64066367	.	A	T	1330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-8.331;QD=4.74;ReadPosRankSum=1.294;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:232,49:0.17:281
chr14	64066373	.	G	A	1396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-8.314;QD=4.99;ReadPosRankSum=2.043;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:231,49:0.17:280
chr14	64066379	rs117229690	C	T	1423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-8.063;QD=5.14;ReadPosRankSum=2.074;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:226,51:0.18:277
chr14	64066394	.	AC	GT	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.645;QD=5.14;ReadPosRankSum=2.679;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:235,53:0.18:288
chr14	64066398	.	G	C	1480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.601;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.645;QD=5.14;ReadPosRankSum=2.617;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:235,53:0.18:288
chr14	64066402	.	A	G	1495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.017;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-8.574;QD=5.27;ReadPosRankSum=2.338;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:231,53:0.19:284
chr14	64066424	rs200323309	T	C	1402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.924;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-7.766;QD=5.16;ReadPosRankSum=0.149;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:222,50:0.18:272
chr14	64066431	rs75569502	C	T	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=2.766;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-7.391;QD=5.27;ReadPosRankSum=-1.104;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:214,49:0.19:263
chr14	64066451	.	A	G	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-7.547;QD=3.80;ReadPosRankSum=-2.090;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:186,34:0.15:220
chr14	64066453	rs74383752	G	A	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.555;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-7.468;QD=3.87;ReadPosRankSum=-2.577;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:182,34:0.16:216
chr14	64066471	rs200681506	GT	AG	425.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.616;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=7.832;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-9.104;QD=2.28;ReadPosRankSum=-2.443;SOR=1.487;set=HC	GT:AD:AF:DP	0/1:166,21:0.11:187
chr14	64434652	rs1255891	G	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	64443258	.	CTT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.822;SOR=1.306;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr14	64444876	rs1255896	G	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	64457079	rs1255907	G	A	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	64457441	rs1273193	G	A	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	64457638	rs1255908	T	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	64460536	rs60596461	A	AT	283.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=3.680;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=13.51;ReadPosRankSum=0.180;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr14	64462007	rs1255912	A	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	64462071	rs1255913	G	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	64464236	rs8009321	C	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	64468918	rs12147217	G	A	250.77	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	64470159	rs4027385	ACT	A	1904.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	64491695	rs4902264	T	C	5332.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:3,209:0.99:212
chr14	64494278	rs10151127	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	64496749	rs4027402	C	T	3301.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	64496872	rs3866737	G	C	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	64497930	rs4027404	G	A	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	64498037	rs4027405	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	64501192	rs9783605	G	A	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	64519035	rs1890908	A	G	6144.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	64519455	rs3829767	A	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	64520416	rs10138253	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	64522550	rs10676670	T	TAATAA	935.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.22;QD=44.56;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	64522674	rs8010911	G	C	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr14	64522843	rs8010699	A	G	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	64523094	rs7153376	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	64532107	rs1255972	A	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	64537295	rs1255965	T	G	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	64537657	rs1255964	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	64542872	rs1255960	G	A	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	64551688	rs1255953	C	T	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	64564527	rs8007972	C	T	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	64612845	rs11629287	C	T	3163.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	64612858	rs10151658	C	A	3643.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	64637147	rs7161192	C	A	5775.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	64640665	rs7148122	C	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.52;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	64691644	rs35455974	AT	A	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.517;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr14	64867522	rs151019303	C	T	2520.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	64882380	rs1950902	A	G	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	64902493	rs3818240	T	C	9598.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr14	64905976	rs45618332	C	T	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	64911627	rs1256143	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	64926433	rs75480958	GTGCT	G	381.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	64935411	rs2230491	C	T	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	64935720	rs1256149	C	T	8169.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	64947040	.	CAAAAA	C	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=10.307;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=-2.124;QD=26.61;ReadPosRankSum=-0.083;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr14	64947181	rs8003790	C	T	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	64953580	rs10132969	T	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	64953591	rs10143839	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	64988114	rs10624421	C	CAA	1481.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	64988279	rs28626711	A	G	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr14	64988924	rs10133411	T	C	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	65008008	.	C	T	7814.77	.	AC=2;AF=1.00;AN=2;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	65008251	rs1063391	C	T	8656.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr14	65009534	rs35270454	C	CT	1682.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=23.37;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	65016702	rs7156953	T	G	4069.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr14	65032226	rs8007313	C	T	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr14	65053999	rs45482504	T	C	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr14	65195794	rs229644	T	C	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr14	65197126	rs229626	T	C	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.58;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	65197143	rs229625	C	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	65197767	rs229624	G	A	7091.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	65199481	rs73273534	T	C	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	65204695	.	T	TGGA	2334.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.77;MQRankSum=0.761;QD=35.91;ReadPosRankSum=0.616;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:5,60:0.92:65
chr14	65208026	rs229650	T	C	5426.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	65209680	rs41301473	A	G	3579.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	65245863	rs1741489	C	G	4457.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	65245956	rs1741488	C	T	7287.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr14	65245962	rs1741487	A	G	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	65246006	rs1741486	G	A	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=1.321;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr14	65246011	rs1107633	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.54;SOR=1.420;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	65246040	rs2357726	G	A	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	65246350	rs1741485	A	G	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	65246623	rs1626923	T	C	10497.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr14	65249052	rs17245552	C	G	8676.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr14	65250939	rs229634	A	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr14	65253232	rs77806	T	C	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr14	65289978	rs179338	A	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	65410200	rs3831077	CT	C	1344.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	65418265	rs7157667	A	T	5623.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	65453493	rs3215788	TG	T	932.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	65470831	rs12587546	A	G	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	65472874	rs56964460	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=3.326;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.386;QD=1.97;ReadPosRankSum=0.543;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr14	65544367	rs762810	C	A	1720.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	65550816	rs7159443	T	A	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	65568215	rs2781373	G	A	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.24;SOR=0.759;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	65801811	rs12881755	A	G	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	65878807	rs1953416	C	T	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	66028446	rs2229677	A	G	4172.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	66028505	rs3825639	T	C	2681.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	66082573	rs8012278	A	G	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	66096297	rs35137471	G	A	3223.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	66209190	rs1054218	C	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	66424605	rs7141711	C	A	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	66455502	rs17827111	A	G	253.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=19.52;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	66455514	rs34837571	C	CT	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=5.219;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=1.118;QD=5.27;ReadPosRankSum=0.315;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr14	66456464	.	C	CA	229.73	.	AC=1;AF=0.500;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr14	67555878	rs12323748	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	67579914	.	T	A	1172.77	.	AC=2;AF=1.00;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	67759282	rs61744208	C	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	67799700	rs113964073	G	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	67807242	rs33973037	TA	T	3099.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:6,162:0.96:168
chr14	67814219	rs71129819	C	CT	516.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr14	67819567	rs10718799	CA	C	345.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.864;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=14.41;ReadPosRankSum=-0.606;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr14	67848479	rs34614329	CT	C	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.391;QD=1.44;ReadPosRankSum=-0.530;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chr14	67878717	rs12888674	A	G	14345.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr14	67912792	rs3742855	A	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	67940347	rs17782021	G	A	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	68022410	rs3742868	C	T	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	68023869	rs10873206	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	68028538	rs11628043	A	G	243.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	68029386	rs1885043	G	A	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	68036853	rs2273593	G	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	68038729	rs2236233	A	G	1388.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	68038779	rs2236232	T	G	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	68044005	rs4902492	C	T	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	68053259	rs10144151	T	G	174.94	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chr14	68053802	rs734028	T	C	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr14	68053977	rs6573783	A	C	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr14	68066979	rs7154825	C	T	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	68113293	rs742869	G	A	3583.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr14	68191109	rs11331653	GT	G	507.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.415;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.75;ReadPosRankSum=0.988;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:15,43:0.74:58
chr14	68191368	rs61991867	G	A	1573.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	68192653	rs7156725	G	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	68196636	rs718212	C	T	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	68234539	rs3742883	T	C	7670.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr14	68236522	rs2295111	G	A	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	68241611	rs11158695	A	G	181.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	68241648	rs141953477	CAAA	C	533.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.34;QD=33.36;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	68242898	rs12886915	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	68244202	rs767972	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	68246855	rs2295106	T	A	1378.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	68246876	rs2295107	C	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	68248281	rs2235962	C	T	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	68264867	rs12891164	A	G	5688.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	68265484	rs7160083	G	A	228.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	68273430	rs181576	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	68274020	rs181572	C	G	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	68331675	rs1474939	A	T	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.87;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	68773296	rs3837659	AC	A	10428.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	68773298	rs60593979	C	G	10437.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr14	68773353	rs2180770	G	A	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	68773469	rs3784104	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	68935789	rs2525505	T	C	2263.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	68944343	rs67962762	CT	C	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.590;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.351;QD=2.73;ReadPosRankSum=-1.063;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:98,51:0.34:149
chr14	68963746	rs765899	C	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	69012355	rs2525529	C	G	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	69077688	rs17834971	G	A	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	69077699	rs56104115	T	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	69117387	rs8021657	A	G	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	69117512	rs8023214	T	C	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	69257858	rs36045050	C	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	69262441	rs3742887	A	G	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	69263074	rs6573857	G	A	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	69328441	rs393673	A	G	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	69328594	rs412638	G	A	7806.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	69328613	rs440689	C	T	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	69328698	rs182780044	G	A	2986.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	69329116	rs424806	T	C	647.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	69329149	rs1742501	C	T	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	69345647	rs12586591	C	T	4329.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	69352230	rs15993	G	A	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	69376658	rs743128	A	C	3607.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	69392264	rs4899272	T	G	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:1,272:1.00:273
chr14	69445118	rs1983700	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	69445646	rs4902685	A	G	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	69445858	rs145260230	A	AGGGCT	2276.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=44.64;SOR=2.540;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	69520518	rs57470426	AT	A	80.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	69695792	rs3742899	G	A	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	69703158	rs3211166	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	69704553	rs8007859	G	T	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr14	69791308	rs2045194	T	A	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	69798284	rs1147461	G	A	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr14	69988954	rs10146531	T	G	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr14	69992873	rs8004574	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	69994473	rs1885400	C	G	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	70037611	rs7494244	A	T	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	70346689	rs56307916	C	T	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	70480215	rs1885482	T	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	70634087	rs2114024	A	G	6300.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr14	70634801	rs17765575	T	C	6086.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	70697154	rs41350744	G	A	6762.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	70712880	rs2296918	A	C	8912.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr14	70713156	rs11629177	G	A	16334.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr14	70714162	rs4899340	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.70;QD=45.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	70714172	rs4899341	T	C	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.84;QD=43.35;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	70793004	rs4749	A	G	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	70793015	.	T	TA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=0.120;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr14	70795756	rs7157430	G	T	79.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr14	70795769	rs56128802	T	A	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	70795772	rs10648369	T	TAC	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	70924462	rs3751523	A	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	70924501	rs8010994	C	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.28;QD=44.30;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	70924507	rs3751524	A	C	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.91;QD=44.41;SOR=1.410;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	70925257	rs12436346	A	G	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.47;QD=31.56;SOR=1.716;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	70926395	rs45573638	T	A	1396.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	70936840	rs111562158	C	T	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.466;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-16.468;QD=3.98;ReadPosRankSum=1.678;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:208,85:0.29:293
chr14	70937494	rs8015742	T	G	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	71109153	rs4902834	C	G	7016.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr14	71109276	rs3742852	G	C	6779.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	71197755	rs1476610	T	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	71202650	rs4141095	C	T	2976.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	71208996	rs4899368	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr14	71209025	rs4902843	C	A	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	71215729	rs10129495	G	A	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	71216863	rs10630067	C	CAT	4408.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	71227913	rs3814872	A	C	4324.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:1,173:0.99:174
chr14	71228000	rs11621281	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	71444788	rs3814871	G	A	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	71445413	rs4391999	A	G	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	71455540	rs3829954	A	G	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	71462759	rs56021283	T	G	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	71485692	rs1859914	A	T	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	71495288	rs34488204	C	T	211.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	71500626	rs11461235	G	GT	497.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	71513930	rs3217014	TG	T	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	71517327	.	G	GT	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.871;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.64;ReadPosRankSum=1.029;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:66,34:0.34:100
chr14	71568683	rs34093157	T	A	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.31;SOR=1.670;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	72040525	rs6574016	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	72055468	rs1859643	A	C	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	72117156	rs8017465	T	C	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	72204878	rs34549978	TA	T	256.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=3.680;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.000;QD=14.26;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr14	72932330	.	GTGGA	G	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=2.793;QD=1.38;ReadPosRankSum=-0.234;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:76,10:0.12:86
chr14	73006865	rs56953388	CT	C	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=5.346;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-1.688;SOR=1.449;set=HC	GT:AD:AF:DP	0/1:69,31:0.31:100
chr14	73007198	rs113373446	GA	G	395.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=4.040;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.414;QD=2.93;ReadPosRankSum=-0.306;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:81,54:0.40:135
chr14	73079291	rs10649920	G	GAA	9905.73	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	73138189	rs1060570	C	A	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	73181428	rs4903049	T	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	73190444	rs35285137	G	GA	896.73	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:12,52:0.81:64
chr14	73198506	rs6574094	T	C	3664.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	73220020	rs3742836	A	G	3443.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	73220153	rs3742835	C	T	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	73220188	rs41314521	A	G	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	73240509	rs12433339	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	73358764	rs8006178	A	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	73358945	rs11158986	A	C	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	73360819	rs5809598	T	TTGTC	15378.73	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr14	73360949	rs2215901	A	G	1499.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	73404680	rs3815500	A	C	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	73404825	rs2302586	G	C	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	73406668	rs887936	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	73409683	rs2240980	C	G	6858.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,272:1.00:272
chr14	73418732	rs3214336	GT	G	284.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	73421262	rs56832550	ACTC	A	5744.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	73421284	rs57911111	A	C	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	73425315	rs7144193	C	T	6902.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	73460113	rs11159002	A	G	573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=-1.989;SOR=0.562;set=HC	GT:AD:AF:DP	0/1:12,39:0.76:51
chr14	73563904	rs67768323	C	T	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	73563909	rs202024700	T	C	225.84	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	73664853	rs165932	G	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	73711394	rs2280792	A	G	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	73711513	rs2280793	G	A	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	73712303	rs2242609	T	G	6434.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	73716633	rs2293793	T	C	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	73718879	rs2242610	A	G	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	73718926	rs1005014	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	73719984	rs2242613	C	T	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	73720686	rs2293795	G	A	2220.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	73727509	rs177389	T	G	3125.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	73732302	rs177383	C	G	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	73733410	rs909216	A	G	8362.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr14	73743205	rs11625196	G	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	73782954	rs10137332	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	73945149	rs10134243	T	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	73957682	rs10144461	C	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	73957772	rs10144469	A	G	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	73957981	rs150704374	G	GC	4693.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	73958101	rs10147070	C	T	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr14	73958375	rs758109	T	C	7055.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr14	73958812	rs3813563	T	C	17578.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr14	73959703	rs10631979	C	CTT	1541.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.900;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=12.277;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.58;ReadPosRankSum=-0.026;SOR=0.145;set=HC	GT:AD:AF:DP	1/1:12,71:0.86:83
chr14	73961765	rs11365617	CA	C	411.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.72;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	73961841	rs1019056	T	C	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	73963383	rs8014577	T	C	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	73989859	rs1074501	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	74036370	rs60568739	G	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	74036500	rs146968042	C	T	4514.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr14	74040341	rs34585397	T	C	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	74041748	rs149033118	A	G	274.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.89;QD=30.53;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	74061968	rs2010070	T	C	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr14	74156229	rs72721725	C	T	4222.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr14	74192165	rs10136165	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	74192994	rs2336074	A	G	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	74193427	rs887508	A	G	5250.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=-0.506;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,204:1.00:205
chr14	74196844	rs6574140	T	C	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	74206481	rs758774	T	C	7098.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr14	74340797	rs11159042	A	T	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	74343981	rs45542836	T	A	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	74349227	rs8005140	G	A	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	74358703	rs140665239	CCT	C	3064.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	74361126	.	C	CT	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.06;ReadPosRankSum=1.340;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr14	74371467	rs35370876	TA	T	770.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	74375956	rs2302136	A	C	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	74388908	rs1127392	T	C	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.78;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	74399212	rs6574155	C	T	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	74399291	rs2336547	G	A	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	74404756	rs28927675	T	C	6750.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr14	74407811	.	CTTTTT	C	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=7.847;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.694;QD=7.05;ReadPosRankSum=0.034;SOR=1.492;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chr14	74409032	rs740506	G	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	74413129	rs7146634	C	G	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr14	74413420	rs7148485	T	C	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	74416600	rs11621743	T	C	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	74424938	rs3180946	T	C	4259.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	74425056	rs3764859	C	A	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	74426284	rs71954619	G	GT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=-2.547;SOR=1.353;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr14	74428286	rs7141392	A	G	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	74428445	rs8500	G	A	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	74433552	rs13743	A	T	260.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	74433859	rs3742813	T	C	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	74439495	rs11623794	G	A	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	74441537	rs2074933	T	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	74441684	rs2074932	G	A	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr14	74443298	.	GTT	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=0.122;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr14	74449664	rs12431489	A	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	74454819	rs12434581	T	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	74527203	rs8017248	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	74665543	rs10145171	G	A	1514.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:28,67:0.71:95
chr14	74711705	.	G	C	1096.77	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.50;QD=45.70;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	74711711	rs80101978	C	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.773;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-0.581;QD=22.21;ReadPosRankSum=-1.911;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr14	74711883	rs35435463	C	T	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr14	74726515	rs11383441	G	GC	3397.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	74753278	rs929449	T	C	22424.77	.	AC=2;AF=1.00;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	1/1:0,857:1.00:857
chr14	74759059	rs35073715	G	C	5103.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:118,226:0.66:344
chr14	74874540	rs11621669	A	G	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:48,91:0.65:139
chr14	74874707	rs2884545	A	G	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:107,162:0.60:269
chr14	74876181	rs12590672	T	G	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:125,177:0.59:302
chr14	74876501	rs4026651	G	C	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:10,43:0.81:53
chr14	74969167	rs2286412	C	T	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr14	74969268	rs77172932	C	T	4108.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:107,188:0.64:295
chr14	74970448	rs5809669	G	GC	1505.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	74971650	rs36016624	TGACCCTTCGAG	T	3802.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.349;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=4.998;QD=9.53;ReadPosRankSum=0.088;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:283,116:0.29:399
chr14	74973556	.	ATG	A	460.73	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr14	74973581	rs201664630	TGC	T	294.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr14	74973740	rs3815329	A	G	3038.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr14	74976986	rs7160756	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:79,39:0.33:118
chr14	74983491	rs147745131	GT	G	1116.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:97,35:0.27:132
chr14	74983495	rs63395061	C	G	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:103,35:0.25:138
chr14	74983841	rs2302114	C	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr14	74989433	rs699371	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr14	74991855	rs862031	A	G	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:194,88:0.31:282
chr14	75002775	rs4899522	G	A	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:129,66:0.34:195
chr14	75016482	rs2196861	T	C	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	75017650	rs934999	G	C	3316.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	75019157	rs11622992	T	C	10341.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr14	75070493	rs3742793	G	C	6888.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr14	75137664	rs2302832	T	C	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	75151047	rs9671386	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr14	75182937	rs2287400	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	75200697	rs3825708	G	A	9856.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr14	75248652	rs45617140	C	G	20537.77	.	AC=1;AF=0.500;AN=2;DB;DP=1432;set=Intersection	GT:AD:AF:DP	0/1:471,957:0.67:1428
chr14	75276079	rs957345	C	G	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	75278211	rs12588415	G	A	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr14	75278302	rs8022046	G	A	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	75279395	rs2302834	T	A	4723.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	75282873	rs5809679	AT	A	1249.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.632;QD=12.62;ReadPosRankSum=-1.130;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:12,87:0.88:99
chr14	75349132	.	CGTGTTGATTGGGTCTGCCAGCACGGT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=5.651;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.529;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr14	75356799	rs5809682	T	TA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.825;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.248;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:14,6:0.30:20
chr14	75378296	rs3081755	GTGTGTA	G	3725.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr14	75378331	rs759057	T	C	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr14	75386576	rs2286913	G	A	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	75388183	rs7156590	C	T	13075.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr14	75412908	rs8005277	A	G	6652.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	75415194	rs2159907	G	C	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr14	75470446	rs175041	C	A	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	75471392	rs376012405	ATTTTTTT	A	796.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;QD=37.94;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	75471399	.	T	A	85.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.366;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=2.199;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=0.717;QD=4.51;ReadPosRankSum=-0.278;SOR=1.565;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr14	75471401	rs200354660	T	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.171;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-0.478;QD=22.67;ReadPosRankSum=0.839;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr14	75471403	rs371500682	T	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.30;QD=51.99;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	75471405	rs201252172	T	A	1364.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=48.74;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	75471408	rs71426992	T	A	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=41.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	75483812	rs13712	T	C	3461.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr14	75485406	rs175052	G	A	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	75485489	rs175053	A	G	4020.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	75497130	rs175070	C	A	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	75505008	rs3742780	G	C	13395.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=1.064;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr14	75505016	rs175075	A	G	14109.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.50;SOR=0.948;set=HC	GT:AD:AF:DP	1/1:0,332:1.00:332
chr14	75506549	.	C	CATATAT	142.87	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.62;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr14	75513883	rs175081	T	C	9696.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr14	75528580	rs10129657	G	A	1310.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	75537381	rs11546525	C	T	13234.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:1,500:1.00:501
chr14	75538217	rs3742778	G	T	6722.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	75544101	rs12589815	C	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	75544189	rs12589876	G	A	3259.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	75551254	rs175487	C	T	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	75551442	rs175486	A	C	9237.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr14	75553655	rs175485	T	C	2563.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr14	75572559	rs119077	T	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	75574087	rs10146482	C	T	11447.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:2,443:1.00:445
chr14	75580152	rs175464	G	A	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	75587351	rs175454	T	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.43;SOR=1.189;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	75590822	rs8017642	G	A	8944.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr14	75601737	rs12435391	A	G	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	75601862	rs876402	A	G	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	75605792	rs1047418	A	G	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr14	75614504	rs3832966	A	ACCCG	3320.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	75735859	rs4903300	G	A	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:202,116:0.36:318
chr14	75745551	rs2239615	T	A	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.245;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=2.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.887;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:64,17:0.21:81
chr14	75745626	rs7101	C	T	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:255,109:0.30:364
chr14	75746690	rs1046117	C	T	3856.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:427,216:0.34:643
chr14	75747407	rs3216792	AG	A	1663.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:166,72:0.30:238
chr14	75758770	rs3742770	G	A	6939.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr14	75758885	rs3742769	A	G	8151.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr14	75759060	rs3742768	C	T	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr14	75760855	rs3742767	G	C	10319.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr14	75904660	rs3625	A	G	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr14	75989286	rs175722	G	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,18:0.38:48
chr14	76045193	rs148092740	GTC	G	1477.73	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:91,44:0.33:135
chr14	76045691	rs8011292	C	T	2190.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:279,127:0.31:406
chr14	76072028	rs4903337	T	C	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,22:0.37:59
chr14	76090978	rs45479302	C	T	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.397;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=2.165;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:148,78:0.35:226
chr14	76129287	rs2302592	C	G	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:50,25:0.33:75
chr14	76149830	rs1477464	T	C	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:77,157:0.67:234
chr14	76150119	rs11406886	C	CT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=-1.336;QD=1.92;ReadPosRankSum=1.063;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr14	76156609	rs2303345	C	T	5148.77	.	AC=1;AF=0.500;AN=2;DB;DP=903;set=Intersection	GT:AD:AF:DP	0/1:599,300:0.33:899
chr14	76173860	rs1005224	T	A	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr14	76175547	rs1981897	A	G	1753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=0.862;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:37,81:0.69:118
chr14	76175565	rs1981898	C	A	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:72,28:0.28:100
chr14	76175594	rs1981899	G	A	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr14	76175666	rs8007792	C	A	117.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr14	76186376	rs2241442	A	G	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:10,34:0.77:44
chr14	76198818	rs5809726	CT	C	413.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.303;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.414;QD=2.87;ReadPosRankSum=2.055;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:100,44:0.31:144
chr14	76200523	rs17183712	A	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr14	76201482	rs2288141	G	T	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=4.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.549;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:174,74:0.30:248
chr14	76203747	rs967889	A	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	76204090	rs4903345	A	G	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr14	76224153	rs2113577	T	A	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=0.039;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:137,80:0.37:217
chr14	76232398	rs2359870	T	C	2361.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	76238003	rs17783198	G	A	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,57:0.61:93
chr14	76238203	rs45480992	G	C	2783.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:87,130:0.60:217
chr14	76238254	rs57636956	AT	A	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.300;QD=3.21;ReadPosRankSum=0.321;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:32,25:0.44:57
chr14	76242089	rs1035614	A	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr14	76287061	rs12206	T	C	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-0.317;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:139,62:0.31:201
chr14	76352929	rs1882827	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr14	76368544	rs1133834	T	C	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.241;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:255,107:0.30:362
chr14	76432136	rs3917187	T	C	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:88,55:0.38:143
chr14	76488551	rs2058941	A	G	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	76548783	rs137916626	GGACCTT	G	1054.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:80,32:0.29:112
chr14	76549377	rs7161722	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr14	76549752	rs8536	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:87,40:0.31:127
chr14	76619167	rs3813547	A	C	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	76638466	rs3783997	A	G	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	76644623	rs2121069	G	A	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	76662446	rs1900127	C	T	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	76777055	rs117331657	T	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr14	76777321	.	T	TTC	205.74	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=22.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	76948262	rs11480158	C	CT	1282.73	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:102,47:0.32:149
chr14	76948862	rs10134248	T	C	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr14	76957887	rs2361293	T	C	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr14	77229539	rs2270324	G	A	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	77236147	rs7142166	G	A	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:22,39:0.64:61
chr14	77236380	rs3815550	C	T	6177.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:114,282:0.71:396
chr14	77239567	rs2075772	A	G	3252.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:101,156:0.61:257
chr14	77242101	rs72737517	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:12,46:0.79:58
chr14	77279064	rs8008004	A	G	5340.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	77292992	rs926120	C	T	4403.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:69,197:0.74:266
chr14	77302449	rs3742752	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:46,29:0.39:75
chr14	77305833	rs12893724	C	T	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=0.315;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr14	77311296	rs12896621	A	G	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	77311445	rs11620630	T	C	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr14	77319773	rs372697027	GGTGTGT	G,GGTGTGTGTGTGT	1864.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=126;set=Intersection	GT:AF:DP	1/2:0.58,0.40:62
chr14	77327254	rs45536531	T	G	2318.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:33,99:0.75:132
chr14	77332367	rs1882844	C	T	5473.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	77332408	rs7160583	T	C	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr14	77333542	.	TG	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.86;ReadPosRankSum=-0.319;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr14	77333852	rs2293805	A	G	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr14	77492891	rs879027	G	A	12780.77	.	AC=1;AF=0.500;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	0/1:285,569:0.67:854
chr14	77493647	rs61991619	A	G	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:111,35:0.24:146
chr14	77493761	rs200317113	TTGCTGC	T	1749.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr14	77493788	rs28692724	C	T	3358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=9.365;MLEAC=1;MLEAF=0.500;MQ=62.31;MQRankSum=2.382;QD=20.23;ReadPosRankSum=2.656;SOR=0.355;set=HC	GT:AD:AF:DP	0/1:77,89:0.54:166
chr14	77493788	.	CTGCTGT	TTGCTGT	2962	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000,1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=28;MQ=61.07;NF=26,80;NR=121,90;PP=2199,2962;QD=15.0;SC=GCTGCTGCTGCTGCTGTTGCT;SbPval=0.6;Source=Platypus;TC=176;TCF=33;TCR=143;TR=147,170;WE=77493801;WS=77493778;set=Platypus	GT:AD:AF:DP	0/1:80,170:0.68:250
chr14	77493788	.	CTGCTGT	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000,1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=28;MQ=61.07;NF=26,80;NR=121,90;PP=2199,2962;QD=15.0;SC=GCTGCTGCTGCTGCTGTTGCT;SbPval=0.6;Source=Platypus;TC=176;TCF=33;TCR=143;TR=147,170;WE=77493801;WS=77493778;set=Platypus	GT:AD:AF:DP	0/1:29,147:0.84:176
chr14	77493791	rs377151545	CTGT	C	3322.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:81,89:0.52:170
chr14	77493875	rs71428775	T	C	1785.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:71,77:0.52:148
chr14	77600344	rs7141511	G	T	2592.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr14	77685357	rs6574361	G	A	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,32:0.60:53
chr14	77686303	rs2287377	A	C	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:1,138:0.99:139
chr14	77697810	rs11295791	TA	T	201.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.60;ReadPosRankSum=-0.619;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:17,19:0.53:36
chr14	77697967	rs375566	A	G	9094.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr14	77699933	rs17750404	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:90,40:0.31:130
chr14	77703057	rs403291	A	G	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	77704974	rs8010477	G	C	11270.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr14	77705726	rs4899646	C	T	1144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.591;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.594;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:195,72:0.27:267
chr14	77709120	rs2287380	A	G	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	77709450	rs409109	T	G	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	77733117	rs28909968	CT	C	2118.73	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:44,106:0.71:150
chr14	77737088	rs4903565	G	A	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:192,86:0.31:278
chr14	77743644	rs1055592	G	A	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr14	77745193	rs3209079	A	C	8000.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr14	77745376	rs61990291	G	A	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:49,61:0.55:110
chr14	77750057	rs2216089	T	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr14	77751925	rs2270419	C	T	10829.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr14	77755221	rs2287387	T	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.801;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=10.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.274;SOR=1.433;set=HC	GT:AD:AF:DP	0/1:140,51:0.27:191
chr14	77766025	rs2287389	G	A	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.91;ReadPosRankSum=0.000;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:9,36:0.80:45
chr14	77766025	.	GGA	AGG	1032	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=27;MQ=60.0;NF=11;NR=19;PP=1032;QD=36.1822624954;SC=ATGGCCAAGAGGAGAGAGAAG;SbPval=0.49;Source=Platypus;TC=40;TCF=14;TCR=26;TR=30;WE=77766035;WS=77766015;set=Platypus	GT:AD:AF:DP	1/0:10,30:0.75:40
chr14	77766027	rs2287390	A	G	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.63;ReadPosRankSum=0.169;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:9,35:0.80:44
chr14	77767382	rs2287392	A	G	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:28,78:0.74:106
chr14	77772599	rs3815627	G	A	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.078;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=1.233;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr14	77787695	rs8177537	G	T	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:91,47:0.34:138
chr14	77794192	rs2287396	C	T	3656.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:76,155:0.67:231
chr14	77794283	rs1046428	T	C	10699.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr14	77795311	rs5809824	CT	C	2650.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	77809939	rs3815628	C	T	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	77843353	rs10141317	G	T	2770.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	77843384	rs3742737	G	T	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	77843814	rs11844594	T	C	3216.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	77844869	rs4903576	A	G	9789.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr14	77845121	rs2193595	A	G	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr14	77857672	rs34048381	C	CT	252.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.874;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=-0.657;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr14	77872509	rs13379432	T	G	2720.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	77872933	.	TAC	T	625.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.762;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=34.73;ReadPosRankSum=0.225;SOR=0.242;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr14	77872977	rs80329306	C	G	633.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.20;ReadPosRankSum=0.952;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:8,25:0.76:33
chr14	77880524	rs10592368	CTT	C	1679.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;MQRankSum=0.524;QD=28.47;ReadPosRankSum=-0.291;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:5,54:0.92:59
chr14	77880536	.	T	A	406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.947;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=-1.250;QD=5.35;ReadPosRankSum=2.361;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:50,26:0.34:76
chr14	77889040	rs8017215	T	C	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr14	77900490	rs67370165	T	G	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:49,113:0.70:162
chr14	77901758	rs113558496	G	GA	536.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.476;QD=10.73;ReadPosRankSum=1.241;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:14,36:0.72:50
chr14	77902418	rs2063997	A	G	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr14	77919587	rs2364158	T	C	12422.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr14	77928525	rs1061638	A	G	3486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=3.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=1.385;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:84,165:0.66:249
chr14	77934905	rs11419661	A	AT	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.05;ReadPosRankSum=0.041;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:26,26:0.50:52
chr14	77935659	rs11539461	G	A	693.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:70,36:0.34:106
chr14	77948566	rs8010861	A	G	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:22,56:0.72:78
chr14	77951124	rs3742728	C	T	1846.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:160,96:0.38:256
chr14	77951364	rs7156032	G	A	1406.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:39,63:0.62:102
chr14	77984540	rs140089337	A	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.069;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.370;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=1.569;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:100,51:0.34:151
chr14	77984573	rs926114	C	T	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	77987958	rs2072672	C	A	2155.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	78002223	rs28628767	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:59,135:0.70:194
chr14	78018246	rs11159275	T	C	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr14	78018614	rs2178876	C	T	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	78023519	rs2272587	C	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:123,52:0.30:175
chr14	78028803	rs2364602	A	G	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	78036899	rs11344772	AG	A	1105.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:135,53:0.28:188
chr14	78036935	rs4903606	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr14	78042979	rs148802575	GC	G	2621.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:29,76:0.72:105
chr14	78063823	rs34670650	AT	A	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.680;QD=3.99;ReadPosRankSum=-0.916;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:29,11:0.28:40
chr14	78170896	rs8021036	C	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	78174473	rs11159286	A	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	78183706	rs176959	C	T	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	78184566	rs176960	C	A	5233.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	78185056	rs372285276	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-2.843;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr14	78187032	rs45611739	T	C	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:108,60:0.36:168
chr14	78187316	rs176965	A	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	78188937	rs61993671	A	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:65,31:0.32:96
chr14	78189181	rs11424968	C	CT	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.225;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=2.822;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr14	78197365	rs114763	C	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:43,115:0.73:158
chr14	78199019	rs12587825	T	A	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:34,84:0.71:118
chr14	78200392	rs10134425	G	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	78201079	rs5809849	CA	C	88.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr14	78226850	rs1477264	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr14	78285461	rs3214433	GT	G	3003.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	78325675	rs28498552	C	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:76,32:0.30:108
chr14	78325698	rs7149884	C	T	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:23,52:0.69:75
chr14	78353259	.	AC	A	1928.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-0.859;QD=25.38;ReadPosRankSum=2.289;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:21,55:0.72:76
chr14	78353261	.	ACACACACACAC	A	1922.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.932;QD=23.74;ReadPosRankSum=2.272;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:25,56:0.69:81
chr14	78353368	rs17826188	T	C	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:95,216:0.69:311
chr14	78365612	rs2287650	C	T	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:45,107:0.70:152
chr14	78366933	rs3837641	G	GAAC	13687.73	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:205,348:0.63:553
chr14	78366967	rs734654	A	G	11357.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:246,517:0.68:763
chr14	78374292	rs17106595	C	T	2013.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:258,120:0.32:378
chr14	78390631	rs150422608	TAAACTC	T	100.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr14	78390880	rs2302944	T	C	3471.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:104,165:0.61:269
chr14	78392008	rs11850022	C	T	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.875;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-1.302;SOR=1.503;set=HC	GT:AD:AF:DP	0/1:65,24:0.27:89
chr14	78710044	rs11626446	G	A	4853.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:109,211:0.66:320
chr14	78744823	rs10134857	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	78748366	rs10147289	C	T	4515.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr14	78766814	rs4903742	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	78993170	rs12882387	A	C	4290.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.269;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.69;ReadPosRankSum=-0.558;SOR=0.312;set=HC	GT:AD:AF:DP	1/1:1,166:0.99:167
chr14	79176133	rs12147248	G	T	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	79181046	rs1465481	A	T	8401.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr14	79276733	rs4133797	C	A	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.49;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	79276735	rs8013394	A	C	374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.09;ReadPosRankSum=0.204;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,22:0.71:31
chr14	79433527	.	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.795;QD=0.81;ReadPosRankSum=-0.372;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr14	79454519	rs154325	G	C	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.493;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.974;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-1.078;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:118,34:0.22:152
chr14	80290425	rs932265	A	G	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	80669580	rs225014	T	C	1209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=4.013;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.930;QD=5.10;ReadPosRankSum=2.135;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:165,72:0.30:237
chr14	80669639	rs5809986	T	TA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=2.34;ReadPosRankSum=1.403;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:62,28:0.31:90
chr14	80672711	rs56033314	A	G	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,18:0.56:32
chr14	80993330	rs34838656	G	GA	787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.000;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=0.839;QD=15.75;ReadPosRankSum=1.043;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:4,46:0.92:50
chr14	80993343	.	G	A	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=2.545;MLEAC=1;MLEAF=0.500;MQ=61.05;MQRankSum=-0.276;QD=15.78;ReadPosRankSum=-0.133;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:17,33:0.66:50
chr14	81251255	rs327463	T	C	2021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-1.072;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:256,120:0.32:376
chr14	81259078	rs4523859	G	A	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:59,112:0.65:171
chr14	81259254	rs45535733	A	T	1996.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-1.528;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:333,128:0.28:461
chr14	81297385	rs7156572	G	A	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:31,50:0.62:81
chr14	81307218	rs7142753	T	G	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr14	81329059	rs75446124	C	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-0.579;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:68,14:0.17:82
chr14	81371088	rs8016507	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,33:0.34:96
chr14	81422257	rs2239610	G	C	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:140,71:0.34:211
chr14	81574687	rs3837640	T	TTCTC	392.73	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr14	81574845	.	T	TTTTTTTCTTTTTAC	1565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.019;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=61.07;MQRankSum=4.144;QD=10.95;ReadPosRankSum=-0.917;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:100,43:0.30:143
chr14	81574959	rs3783942	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:219,95:0.30:314
chr14	81575005	rs3783941	C	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:144,59:0.29:203
chr14	81610583	rs1991517	G	C	10734.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr14	81646773	rs72695722	C	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.057;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=10.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.88;ReadPosRankSum=-0.687;SOR=3.047;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr14	81667852	rs8019633	A	T	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	81676360	rs201118427	C	CT,CTA	2394.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=101;set=Intersection	GT:AF:DP	1/1:1.00:54
chr14	81676361	.	AG	CT	856	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=2;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=3;NR=14;PP=856;QD=53.498110286;SC=CATTTTCGGCAGGACAATTCT;SbPval=0.48;Source=Platypus;TC=20;TCF=3;TCR=17;TR=17;WE=81676410;WS=81676350;set=Platypus	GT:AD:AF:DP	1/1:3,17:0.85:20
chr14	81676361	.	A	AC	2441.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	81676362	rs199721074	G	T	2450.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	81676370	rs368782223	CTTTATCATACAGAATGGTCCCACAAGAAATA	CGAATGGTCCCACAAGAAATA,C	2428.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=89;set=Intersection	GT:AF:DP	1/1:1.00:55
chr14	81676382	rs372189020	GAATGGTCCCACAAGAAATAT	G	2422.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	81676402	.	T	G	405	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=3;NR=14;PP=405;QD=25.8688948557;SC=ACAAGAAATATGCAGGAATTG;SbPval=0.34;Source=Platypus;TC=25;TCF=3;TCR=22;TR=17;WE=81676410;WS=81676350;set=Platypus	GT:AD:AF:DP	1/1:8,17:0.68:25
chr14	81686938	rs145594822	A	AT	4102.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	81728288	.	TA	T	181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.548;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.033;SOR=0.939;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chr14	81737076	rs2241621	A	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr14	81744736	rs3813535	A	G	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr14	81969279	rs140819089	T	A	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.627;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:45,18:0.29:63
chr14	85995608	rs12590399	T	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.59;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	85995614	rs12587861	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.41;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	86088056	rs10141266	T	C	6613.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	87381144	rs79886162	C	T	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-0.764;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:102,40:0.28:142
chr14	87386664	rs76413855	A	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:90,45:0.33:135
chr14	88400449	rs413750	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	88400486	rs1042029	A	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	88401213	rs421262	T	C	5817.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	88406120	rs45626938	C	T	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.50;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	88406127	rs45567441	G	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.12;SOR=1.496;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr14	88406404	rs417276	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr14	88407716	rs34752717	T	TA	1163.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.306;MLEAC=2;MLEAF=1.000;MQ=60.54;MQRankSum=1.038;QD=14.01;ReadPosRankSum=-0.231;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:12,71:0.86:83
chr14	88407734	rs448805	G	C	4949.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	88407875	rs421466	T	A	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr14	88407917	rs12432149	G	A	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	88411803	rs444902	T	C	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	88411947	rs367327	T	C	3494.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr14	88414283	rs398343	G	A	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	88416390	rs440426	A	G	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr14	88416441	rs451073	C	T	256.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	88417095	rs11300320	GA	G	1652.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:3,85:0.97:88
chr14	88417161	rs431748	C	T	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=25.80;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	88417244	rs443019	C	T	200.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	88431898	rs12888666	C	T	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr14	88453186	rs2165567	A	G	1208.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	88453278	rs2119702	T	G	3953.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr14	88453424	rs2119703	G	A	1773.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,77:0.99:78
chr14	88454691	rs2245387	C	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	88454910	rs2289511	G	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr14	88477413	rs6574978	C	T	10528.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr14	88651826	.	AAC	A	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.29;ReadPosRankSum=-1.989;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:317,40:0.11:357
chr14	88729931	rs761971	G	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr14	88737193	rs1298237	T	C	8201.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr14	88792816	rs3742690	T	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	88852031	rs709886	A	G	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	88852279	rs5810413	TG	T	1972.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	88862529	rs3179969	G	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	88894210	rs2295135	T	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	88895669	rs386579	T	G	2292.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.855;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.31;ReadPosRankSum=-0.752;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:1,80:0.99:81
chr14	88895941	rs61975260	C	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	88934651	rs366476	G	A	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	88935925	rs2297129	A	G	8772.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr14	88936254	rs2297128	A	G	15459.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr14	88938652	rs2274736	A	G	6446.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	88945591	rs879932	A	G	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr14	88946622	rs2401751	G	A	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr14	88970925	rs1998670	C	T	11380.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr14	88971758	rs2274735	T	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	88974131	rs34965888	GAT	G	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	88974417	rs10143744	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	88983670	rs10150986	G	A	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr14	89037482	rs10682918	C	CAT	2355.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	89042180	rs1469602	T	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	89063167	rs2297124	A	G	15924.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr14	89082396	rs61173654	A	AT	2156.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	89087278	rs201884924	TA	T	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.116;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=7.781;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.452;QD=1.79;ReadPosRankSum=-0.327;SOR=1.556;set=HC	GT:AD:AF:DP	0/1:74,35:0.32:109
chr14	89088266	rs4635267	C	T	11179.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr14	89088357	rs56144430	G	A	18193.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr14	89088388	rs2983488	G	C	13730.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:2,564:1.00:566
chr14	89089149	rs11382327	C	CT	874.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr14	89094243	rs1144916	G	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	89105287	rs1152383	T	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	89148486	rs17260380	C	T	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	89205265	rs17188228	T	C	3133.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	89258877	rs61982739	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	89307320	rs17700296	T	C	7506.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	89591829	rs17777553	G	T	2052.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:41,83:0.67:124
chr14	89647238	.	AAG	A	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.638;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=4.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.969;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:126,14:0.10:140
chr14	89647259	rs140257053	G	GGCAGAGAACATGCATGGA	4435.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	89647297	rs34338248	T	TAC	961.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr14	89747162	rs11845021	A	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=0.251;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:44,21:0.32:65
chr14	89747473	rs7147341	T	C	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr14	89867978	rs12147030	T	C	17802.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr14	89884022	rs7422	A	C	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	90263500	rs9026	T	A	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:31,82:0.73:113
chr14	90263525	rs1555616	C	A	5336.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	90303065	rs8021113	T	C	2293.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.04;SOR=1.795;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr14	90303113	rs8019848	A	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	90303383	rs8020323	A	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	90303435	rs12437204	T	A	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=43.77;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	90303445	rs12437206	T	C	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=42.46;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr14	90416309	rs8003068	T	C	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=0.817;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr14	90429749	rs3825663	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:112,56:0.33:168
chr14	90429858	rs28365054	G	A	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-1.575;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:124,54:0.30:178
chr14	90432426	rs35782158	G	A	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=4.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.585;SOR=0.182;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr14	90432615	rs35257587	C	T	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-1.182;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:117,35:0.23:152
chr14	90432652	rs34705515	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.139;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:84,24:0.22:108
chr14	90442211	rs11851399	A	G	4453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.53;ReadPosRankSum=1.457;SOR=0.825;set=HC	GT:AD:AF:DP	0/1:295,128:0.30:423
chr14	90442217	rs11851415	C	T	4499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-0.199;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:277,129:0.32:406
chr14	90446803	rs34657096	A	G	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:47,18:0.28:65
chr14	90447060	rs146934547	A	AT	327.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.07;ReadPosRankSum=1.400;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:31,23:0.43:54
chr14	90451303	rs1296406	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr14	90451500	rs17126522	A	G	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=-1.840;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:41,25:0.38:66
chr14	90455460	rs35972056	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:27,21:0.44:48
chr14	90456188	rs2401863	G	T	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr14	90458397	rs35621567	GT	G	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.235;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.501;QD=1.05;ReadPosRankSum=-1.818;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:44,14:0.24:58
chr14	90489298	rs11851131	G	A	199.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr14	90509564	rs9488	C	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=-0.755;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:135,50:0.27:185
chr14	90528746	.	T	G	1101.77	.	AC=1;AF=0.500;AN=2;DP=167;set=Intersection	GT:AD:AF:DP	0/1:107,60:0.36:167
chr14	90528967	rs12878088	C	A	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:80,50:0.38:130
chr14	90723109	rs6575119	T	G	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	90731687	rs34260220	GA	G	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.671;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=-0.539;QD=1.66;ReadPosRankSum=-1.205;SOR=1.169;set=HC	GT:AD:AF:DP	0/1:45,21:0.32:66
chr14	90734826	rs11624246	A	G	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	90740324	rs34512486	ATCT	A	21390.73	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr14	90740588	rs10140761	G	C	4833.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr14	90744672	rs10184	G	A	6587.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr14	90745422	rs3737035	T	C	7082.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr14	90756503	rs3742672	G	A	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	90767607	rs3825661	C	T	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	90767746	rs3742669	C	A	3919.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr14	90767759	rs3742668	G	A	3393.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr14	90767856	rs3742667	T	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr14	90769539	rs2149647	C	T	9766.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:2,370:0.99:372
chr14	90770210	rs4904670	C	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	90863489	rs12886342	G	A	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr14	90865283	rs2300497	T	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr14	90865462	rs2300498	C	G	4205.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr14	90866346	rs2268433	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr14	91007618	rs1294572	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	91068663	rs61987022	G	A	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr14	91069704	rs1286462	T	C	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr14	91110582	rs3830889	TACATAC	T	1426.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,36:0.75:48
chr14	91113471	rs2277512	G	A	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:41,51:0.55:92
chr14	91113537	rs1286422	A	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr14	91123575	rs3742660	T	C	2541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.969;QD=5.76;ReadPosRankSum=0.323;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:291,150:0.34:441
chr14	91142816	rs45517739	C	T	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:91,62:0.41:153
chr14	91146670	rs12147094	C	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,16:0.28:57
chr14	91156151	rs942738	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.92;ReadPosRankSum=-0.195;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:37,29:0.44:66
chr14	91161862	rs10146731	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.558;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:248,89:0.26:337
chr14	91165572	rs1749699	G	A	12178.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr14	91165606	rs1742100	G	A	5094.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:128,230:0.64:358
chr14	91196317	rs10135495	T	C	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr14	91282452	rs2401918	T	G	1677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.06;ReadPosRankSum=1.495;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,40:0.65:62
chr14	91282470	rs943700	G	A	1955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.26;ReadPosRankSum=0.815;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:33,59:0.64:92
chr14	91365646	rs61587732	GAA	G,GAAA	3105.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-1.663;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=1.343;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.69;ReadPosRankSum=0.767;SOR=0.464;set=HC	GT:AD:AF:DP	1/2:30,131,37:0.66,0.19:198
chr14	91365649	rs117599685	A	G	1163.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.352;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=0.432;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:113,101:0.47:214
chr14	91372685	.	C	CA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=6.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.091;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr14	91389772	rs10655120	T	TCATC	803.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	91526625	.	T	A	1344.77	.	AC=1;AF=0.500;AN=2;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr14	91592748	rs57615276	C	CTTCTT	3114.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	91626761	.	TAAA	T	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.445;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr14	91639611	.	A	AT	386.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DP=296;ExcessHet=3.0103;FS=1.160;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.674;QD=1.35;ReadPosRankSum=0.781;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:226,61:0.21:287
chr14	91642234	rs2295528	A	G	2109.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:254,120:0.32:374
chr14	91642395	rs34302825	G	A	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:159,89:0.36:248
chr14	91662663	rs2295526	A	G	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr14	91681623	rs11622036	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	91681888	rs34424078	G	A	14968.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr14	91710562	rs138684591	GACACAC	GAC,G	866.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:22
chr14	91739081	rs941920	A	G	4169.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	91751788	rs11341843	TC	T	13125.73	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr14	91763971	rs5810533	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.228;QD=3.86;ReadPosRankSum=-2.398;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr14	91773568	rs1970912	T	C	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:49,121:0.71:170
chr14	91776434	rs2277507	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	91874956	rs2295882	T	C	4553.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:113,205:0.64:318
chr14	91957244	rs36126220	AT	A	32.95	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.105;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.66;ReadPosRankSum=-1.016;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	92041075	rs1704614	C	G	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chr14	92053395	rs2295789	G	C	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=0.171;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:150,66:0.31:216
chr14	92058445	rs1285637	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr14	92074545	rs1743159	T	A	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr14	92084004	rs1620238	C	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	92088016	rs1296082	G	A	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	92105643	rs1704630	G	A	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,32:0.64:50
chr14	92126443	rs55665101	ATC	A	325.73	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr14	92126460	rs1704673	T	A	305.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,17:0.40:43
chr14	92150089	rs10139470	G	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr14	92174343	rs4605095	C	T	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr14	92185731	rs17783516	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr14	92189548	rs35078318	G	GA	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.735;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=0.685;SOR=0.270;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr14	92251587	rs61990064	A	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:212,98:0.32:310
chr14	92264068	rs74650297	A	C	2203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=6.420;MLEAC=1;MLEAF=0.500;MQ=63.71;MQRankSum=4.750;QD=25.93;ReadPosRankSum=-0.978;SOR=0.248;set=HC	GT:AD:AF:DP	0/1:28,57:0.67:85
chr14	92264079	rs201894129	AT	A	492.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.552;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.672;MLEAC=1;MLEAF=0.500;MQ=63.67;MQRankSum=8.987;QD=4.74;ReadPosRankSum=-0.020;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:61,43:0.41:104
chr14	92264081	rs200140556	A	C	501.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=63.64;MQRankSum=8.861;QD=4.78;ReadPosRankSum=-0.335;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:61,44:0.42:105
chr14	92268531	rs10498631	C	T	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr14	92268615	rs2402073	T	G	4525.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:1,178:0.99:179
chr14	92279983	rs17127600	T	G	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:53,18:0.25:71
chr14	92280182	.	T	C	985.77	.	AC=1;AF=0.500;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr14	92336775	rs929608	T	C	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr14	92343764	rs2430341	C	T	4183.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	92347680	rs2430347	A	G	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr14	92403660	rs2474028	T	C	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	92420861	rs2430336	C	T	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.065;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,8:0.31:26
chr14	92477168	rs2277526	A	G	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:96,59:0.38:155
chr14	92491853	.	T	C	626	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=8;HapScore=3;MGOF=4;MMLQ=23;MQ=60.32;NF=2;NR=10;PP=626;QD=55.0642677123;SC=CGTACTGCTTTCCCCCCCCAA;SbPval=0.92;Source=Platypus;TC=50;TCF=16;TCR=34;TR=12;WE=92491868;WS=92491843;set=Platypus	GT:AD:AF:DP	1/0:38,12:0.24:50
chr14	92491860	.	C	CCCG	644	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=7;HapScore=3;MGOF=4;MMLQ=23;MQ=61.07;NF=0;NR=11;PP=644;QD=60.0909090909;SC=CTTTCCCCCCCCAAAAATGTC;SbPval=1.0;Source=Platypus;TC=34;TCF=2;TCR=32;TR=11;WE=92491868;WS=92491843;set=Platypus	GT:AD:AF:DP	1/0:23,11:0.32:34
chr14	92537354	.	C	CCTGCTGCTGCTGCTGCTGCTGCTGCTG,CCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG,CCTGCTGCTGCTGCTGCTGCTGCTG	4520.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=228;set=Intersection	GT:AF:DP	1/2:0.73,0.24:101
chr14	92549586	rs16999141	G	A	1771.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:156,90:0.37:246
chr14	92559678	rs4904834	G	C	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr14	92560294	rs111923598	T	TG	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.372;MLEAC=1;MLEAF=0.500;MQ=61.12;MQRankSum=0.000;QD=2.57;ReadPosRankSum=1.201;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:28,14:0.33:42
chr14	92560311	rs2402108	A	G	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	92563254	rs35079962	A	AT	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.761;QD=7.90;ReadPosRankSum=0.611;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr14	92572927	rs3814834	G	A	4400.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:470,253:0.35:723
chr14	92582472	rs13350	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.56;ReadPosRankSum=0.225;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:7,28:0.80:35
chr14	92582655	rs11160044	T	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.74;ReadPosRankSum=1.503;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:8,16:0.67:24
chr14	92582680	rs12050222	T	C	106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=1.263;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr14	92584021	rs36078150	C	CTTTT	452.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=-0.258;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:11,23:0.68:34
chr14	92584064	rs12882784	A	G	782.81	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:6,37:0.86:43
chr14	92585205	rs7152991	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr14	92585304	rs34114160	C	A	1012.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.69;ReadPosRankSum=-2.426;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:26,48:0.65:74
chr14	92585332	rs10649809	G	GAA	1463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.41;ReadPosRankSum=0.203;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:39,56:0.59:95
chr14	92588002	rs3818263	T	G	3017.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:56,142:0.72:198
chr14	92588155	rs10603293	ATTTT	A	3495.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.051;QD=24.97;ReadPosRankSum=-2.025;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:41,99:0.71:140
chr14	92588192	rs12886909	T	C	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:29,66:0.69:95
chr14	92588219	rs7148709	G	A	932.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,38:0.75:51
chr14	92627668	rs2025071	T	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chr14	92627710	rs2025070	T	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr14	92792255	rs941646	G	A	6363.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr14	92792432	rs941645	T	C	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	92905817	rs4900122	A	G	2755.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:67,126:0.65:193
chr14	92909073	rs941650	T	C	4475.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:92,208:0.69:300
chr14	92911579	rs78521571	GG	AT	5942.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;JOINED;set=Intersection	GT:AD:AF:DP	0/1:127,151:0.54:278
chr14	92915661	.	CA	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=3.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.332;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:37,17:0.31:54
chr14	92915665	.	CA	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.32;ReadPosRankSum=-0.212;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:39,14:0.26:53
chr14	92915666	.	A	C	808	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=4;HapScore=1;MGOF=33;MMLQ=28;MQ=59.6;NF=10;NR=29;PP=808;QD=21.6095182704;SC=ACACACACACACCCTCTCACA;SbPval=0.43;Source=Platypus;TC=65;TCF=15;TCR=50;TR=39;WE=92915674;WS=92915656;set=Platypus	GT:AD:AF:DP	0/1:26,39:0.60:65
chr14	92920371	rs7144273	C	T	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=3.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-0.485;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:184,71:0.28:255
chr14	92922713	rs7158400	T	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.302;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=9.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-0.005;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:71,33:0.32:104
chr14	92950048	rs35769213	CCTT	C	1166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.752;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.667;QD=8.71;ReadPosRankSum=0.772;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:98,36:0.27:134
chr14	92958612	rs7150406	G	A	765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-1.860;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:130,51:0.28:181
chr14	92959216	rs11623883	G	A	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.58;ReadPosRankSum=-1.277;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:17,38:0.69:55
chr14	92959361	.	C	G	33	.	AC=1;AF=0.500;AN=2;BRF=0.42;FR=0.5000;HP=2;HapScore=2;MGOF=70;MMLQ=26;MQ=54.39;NF=3;NR=3;PP=33;QD=11.2952020912;SC=CACACACACACAGAGAAAGAT;SbPval=0.25;Source=Platypus;TC=17;TCF=5;TCR=12;TR=6;WE=92959369;WS=92959351;set=Platypus	GT:AD:AF:DP	0/1:11,6:0.35:17
chr14	92960025	rs4904942	T	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	92981606	rs55930890	C	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:171,75:0.30:246
chr14	93081653	rs75641131	C	T	1293.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:18,57:0.76:75
chr14	93118038	rs3829947	A	G	5977.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:138,281:0.67:419
chr14	93118669	rs3742716	G	A	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:395,183:0.32:578
chr14	93125415	rs2295991	G	C	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:59,75:0.56:134
chr14	93154537	rs71698059	TGGC	T	8028.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:2,310:0.99:312
chr14	93170741	rs2250672	T	C	1145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.506;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:158,71:0.31:229
chr14	93170901	rs2402189	A	C	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.138;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=1.281;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:122,44:0.27:166
chr14	93170993	rs9791	C	T	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-1.128;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:274,109:0.28:383
chr14	93178191	rs1951708	A	G	23894.77	.	AC=2;AF=1.00;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr14	93182466	rs1242119	G	A	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=2.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=0.235;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:152,48:0.24:200
chr14	93198972	rs12885208	A	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:31,88:0.74:119
chr14	93199080	rs2236264	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:263,162:0.38:425
chr14	93199203	rs1613441	T	A	4946.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr14	93276654	rs1040835	T	C	5491.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr14	93276806	rs1040833	C	T	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	93282872	rs142530146	T	TCTTCG	681.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;MQ=60.49;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	93285962	rs12880298	G	A	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	93286291	rs10716250	AC	A	2606.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr14	93290723	rs3818256	A	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	93290856	rs2273646	T	C	14165.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	93290859	rs2273645	C	T	14165.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.55;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr14	93303604	rs4904994	C	T	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	93303850	rs113573267	T	TG	5749.73	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	93303854	rs74598769	T	C	5589.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.20;SOR=2.703;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr14	93303855	rs34061602	G	T	5565.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.77;SOR=2.757;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr14	93389403	rs7159323	A	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.50;SOR=2.226;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	93389435	rs9658638	C	T	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr14	93392834	rs7146118	C	A	3892.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr14	93398144	rs11851859	A	G	5770.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr14	93401178	rs941581	A	G	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr14	93401316	rs7610	T	C	880.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	93407062	rs1043542	A	G	7587.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr14	93407248	rs11446	A	G	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	93532665	rs370298561	ATG	A	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=5.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.781;SOR=1.658;set=HC	GT:AD:AF:DP	0/1:131,29:0.18:160
chr14	93649501	rs1046099	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr14	93649999	rs142325905	C	T	4014.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:71,174:0.71:245
chr14	93693422	rs2905	C	T	3181.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:106,147:0.58:253
chr14	93712644	rs139992045	TAA	T	1805.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:8,68:0.89:76
chr14	93720181	rs8012209	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	93762162	rs2273639	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	93799221	rs2273640	G	A	11314.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr14	93799284	rs146686071	ACCG	A	4109.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	93943998	rs61992606	G	A	6668.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr14	93953907	rs33942732	A	AT	1094.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:9,59:0.87:68
chr14	93954192	rs12884458	C	T	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	93962689	.	ATG	A	51	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=4;MGOF=1;MMLQ=25;MQ=60.0;NF=1;NR=1;PP=51;QD=39.0;SC=TTTCTTATATATGTATATCAA;SbPval=0.64;Source=Platypus;TC=10;TCF=6;TCR=4;TR=2;WE=93962699;WS=93962679;set=Platypus	GT:AD:AF:DP	0/1:8,2:0.20:10
chr14	93962691	rs8006093	G	A	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr14	93963402	rs6575337	A	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	93998806	rs942068	C	A	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	94008753	rs12893237	A	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	94129223	.	AAC	A	66	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=66;QD=34.5;SC=AAACACTTTAAACACACACAC;SbPval=1.0;Source=Platypus;TC=14;TCF=1;TCR=13;TR=2;WE=94129232;WS=94129213;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chr14	94187832	rs1887197	C	T	1843.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=0.263;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:44,86:0.66:130
chr14	94192137	rs10873436	C	T	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:6,35:0.85:41
chr14	94245649	rs4905087	A	G	5912.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:146,287:0.66:433
chr14	94391699	rs10141024	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:123,58:0.32:181
chr14	94400431	rs11625548	T	C	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr14	94405871	rs10873442	G	C	8421.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr14	94406096	rs7155320	A	C	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:1,57:0.98:58
chr14	94410447	rs10134105	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr14	94417421	rs7147919	G	A	12521.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr14	94417541	rs4277287	A	G	4229.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	94417586	rs4483793	G	A	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	94419888	rs4243701	A	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	94464432	rs733166	A	G	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr14	94465789	rs8013933	T	C	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr14	94466081	rs4905137	C	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr14	94469794	rs75333263	C	T	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:31,78:0.72:109
chr14	94469801	rs12890024	A	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:66,28:0.30:94
chr14	94475182	rs78569439	A	G	3135.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	94503578	rs10138711	G	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	94510964	rs2273226	T	C	10537.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,400:1.00:401
chr14	94512415	rs8021300	T	C	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	94517533	rs112814907	C	CCACGG	974.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	94519199	rs3790045	C	T	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr14	94524216	rs1056810	T	C	3160.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	94527525	rs11846519	C	T	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	94563193	rs7157940	T	C	3251.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:81,153:0.65:234
chr14	94563265	rs79237142	C	T	2677.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:88,128:0.59:216
chr14	94564035	rs2896258	A	G	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.38;ReadPosRankSum=-0.360;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:49,57:0.54:106
chr14	94564039	rs2402407	A	G	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.738;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.18;ReadPosRankSum=-0.497;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:48,54:0.53:102
chr14	94564058	rs2402408	G	A	1351.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:51,62:0.55:113
chr14	94567032	rs3818119	CC	TT	3669.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;JOINED;set=Intersection	GT:AD:AF:DP	0/1:52,91:0.64:143
chr14	94578162	rs2239644	G	T	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,65:0.72:90
chr14	94578188	rs1243080	C	A	1062.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr14	94581695	rs143475270	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.860;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:123,28:0.19:151
chr14	94582130	rs3833507	T	TGGCCATGGC	2103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=2.750;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-0.880;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:163,62:0.28:225
chr14	94594768	rs958187	T	G	6967.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr14	94595794	rs45539232	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:92,49:0.35:141
chr14	94595989	rs2273514	T	C	4603.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:75,203:0.73:278
chr14	94700138	rs4905172	C	G	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:33,19:0.37:52
chr14	94745083	rs5810667	G	GT	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=3.355;QD=1.30;ReadPosRankSum=0.030;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:96,25:0.21:121
chr14	94770990	rs2273399	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-1.763;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chr14	94776221	rs2228541	A	C	1721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=0.822;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:314,119:0.27:433
chr14	94776401	rs11160168	T	C	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr14	94776441	rs11160169	C	A	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr14	94830555	rs3819333	C	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr14	94832931	rs146058736	C	T	2811.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:303,160:0.35:463
chr14	94833033	rs1956172	T	C	1773.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:192,97:0.34:289
chr14	94844706	rs1243163	G	A	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr14	94844843	rs1303	T	G	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=1.291;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:145,69:0.32:214
chr14	94847415	rs6647	A	G	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr14	94849201	rs709932	C	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.516;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:150,67:0.31:217
chr14	94909630	rs3818257	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr14	94912799	rs12888805	G	A	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:37,82:0.69:119
chr14	94912896	rs1885137	T	G	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:57,75:0.57:132
chr14	94914455	rs10129672	A	T	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,30:0.75:40
chr14	94929541	rs2224418	G	A	2665.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:51,121:0.70:172
chr14	94930956	rs12891900	T	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr14	94930980	rs11628686	A	G	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:23,28:0.55:51
chr14	94931016	rs8020984	T	G	1579.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:48,68:0.59:116
chr14	94931105	rs11628722	A	G	4306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=-1.652;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:99,201:0.67:300
chr14	94933709	rs6575433	C	T	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:33,117:0.78:150
chr14	94935566	rs4900231	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:164,69:0.30:233
chr14	94942391	rs10146263	G	A	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr14	94956134	rs3736803	G	A	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:51,28:0.35:79
chr14	95028020	rs910352	C	T	2786.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:49,118:0.71:167
chr14	95029852	rs5508	G	T	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:123,77:0.39:200
chr14	95053849	rs6113	T	C	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:410,187:0.31:597
chr14	95053863	rs6118	C	T	2923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.964;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=2.213;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:410,175:0.30:585
chr14	95053890	rs6115	G	A	17558.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.82;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,535:1.00:535
chr14	95053890	.	GC	AC,AT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=25;MQ=59.98;NF=247,72;NR=262,85;PP=2962,1707;QD=20;SC=CCCAGCCAGAGCATCTTCTTC;SbPval=0.58;Source=Platypus;TC=512;TCF=250;TCR=262;TR=509,157;WE=95053899;WS=95053880;set=Platypus	GT:AF:DP	0/1:0.99:512
chr14	95053891	rs6111	C	T	2964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=1.069;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:361,171:0.32:532
chr14	95054012	rs6119	A	G	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:287,146:0.34:433
chr14	95054176	rs6112	T	C	18101.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,665:1.00:665
chr14	95056264	rs2069984	A	G	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:21,11:0.34:32
chr14	95057270	rs6107	G	A	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	95057294	rs2069987	T	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr14	95057374	.	TTCCAC	T	373	.	AC=1;AF=0.500;AN=2;BRF=0.63;FR=0.5000;HP=2;HapScore=2;MGOF=63;MMLQ=27;MQ=57.07;NF=0;NR=12;PP=373;QD=32.5;SC=CTCTATTCAATTCCACTCCAC;SbPval=1.0;Source=Platypus;TC=17;TCF=0;TCR=17;TR=12;WE=95057386;WS=95057364;set=Platypus	GT:AD:AF:DP	0/1:5,12:0.71:17
chr14	95058360	rs6109	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	95058462	rs6116	A	C	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:51,126:0.71:177
chr14	95058631	rs6108	A	T	1396.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:21,56:0.73:77
chr14	95078677	rs1884082	G	T	2344.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:48,109:0.69:157
chr14	95080803	rs4934	G	A	3413.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:70,149:0.68:219
chr14	95081744	rs2896288	G	A	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=0.730;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:48,32:0.40:80
chr14	95085465	rs8004988	C	G	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr14	95088894	rs80150124	G	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr14	95107359	rs72696806	C	T	663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=-1.718;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:57,36:0.39:93
chr14	95107973	rs4905226	C	T	3056.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:88,133:0.60:221
chr14	95109833	rs17826595	G	A	2007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=0.299;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:216,119:0.36:335
chr14	95110017	rs1884084	G	T	853.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:70,45:0.39:115
chr14	95566101	rs71899983	AC	A	244.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=2.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-1.361;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr14	95566103	.	ACACAC	A,AACAC	1313.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-0.538;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=3.700;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.32;ReadPosRankSum=0.537;SOR=0.278;set=HC	GT:AD:AF:DP	1/2:8,14,46:0.21,0.68:68
chr14	95566105	rs367764979	ACAC	A	1218.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.66;ReadPosRankSum=2.719;SOR=0.997;set=HC	GT:AD:AF:DP	0/1:18,51:0.74:69
chr14	95574594	rs34975585	G	GT	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.56;ReadPosRankSum=1.617;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr14	95583927	rs144973109	T	C	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:79,178:0.69:257
chr14	95659747	rs3180753	C	T	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,91:0.67:135
chr14	95659768	rs10130428	A	G	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:32,75:0.70:107
chr14	95682152	rs377356751	CTGTGTGTGTGTGTG	C,CTGTGTGTGTGTGTGTGTGTG	1074.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=71;set=Intersection	GT:AF:DP	1/2:0.47,0.44:36
chr14	95688959	rs945456	C	G	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:99,46:0.32:145
chr14	95696275	rs72710126	G	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.143;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr14	95898487	rs1187747	G	A	2407.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=0.181;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,102:0.98:104
chr14	95905840	rs17092236	C	T	2616.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	95906321	rs9671369	G	A	10035.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr14	95906441	rs910791	A	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr14	95906476	rs910790	C	T	1876.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.60;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr14	95910933	rs9919918	T	C	1258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.121;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=-1.039;QD=6.08;ReadPosRankSum=-0.032;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:134,73:0.35:207
chr14	95910969	rs36019358	CAG	C	6589.73	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:81,171:0.68:252
chr14	95911008	rs9919887	A	G	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.987;QD=5.53;ReadPosRankSum=-1.809;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:165,81:0.33:246
chr14	95911123	rs8007583	G	T	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr14	95916566	rs10148435	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,16:0.35:46
chr14	95918466	rs7144636	A	G	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.66;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	95918473	rs7144641	A	G	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.77;SOR=1.831;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	95918548	rs11362194	AC	A	13751.73	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr14	95918625	rs4905318	T	C	13053.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr14	95918741	rs4905319	G	A	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=2.615;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	95918745	rs4905320	C	T	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=2.790;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr14	95918759	rs4905321	C	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	95921741	rs4905324	C	T	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	95923421	rs375479710	CAA	C,CA	3048.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=2.762;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;MQRankSum=-0.141;QD=18.37;ReadPosRankSum=0.531;SOR=0.260;set=HC	GT:AD:AF:DP	1/2:2,120,44:0.72,0.27:166
chr14	95923470	rs146162422	ACTGTC	A	17763.73	.	AC=2;AF=1.00;AN=2;DB;DP=402;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr14	95923670	rs2024863	A	C	12250.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:2,456:1.00:458
chr14	95923756	rs10610273	GGT	G	286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.985;QD=3.19;ReadPosRankSum=-2.799;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:69,21:0.23:90
chr14	95932223	rs12434921	A	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:2,90:0.98:92
chr14	95932628	rs4900270	T	C	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	95983330	rs150722048	T	C	24395.77	.	AC=1;AF=0.500;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	0/1:313,620:0.66:933
chr14	95983343	rs186766499	G	A	25133.77	.	AC=1;AF=0.500;AN=2;DB;DP=1005;set=Intersection	GT:AD:AF:DP	0/1:350,651:0.65:1001
chr14	95999820	rs3825546	T	C	3667.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:128,175:0.58:303
chr14	96009307	rs716315	C	T	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.075;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:117,64:0.35:181
chr14	96103099	rs4905366	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	96103269	rs11160283	G	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr14	96131432	rs1743491	A	G	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:90,52:0.37:142
chr14	96135857	rs1748965	C	T	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=2.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=1.712;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:188,106:0.36:294
chr14	96152728	rs11160284	T	C	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=1.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.997;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:69,33:0.32:102
chr14	96157187	rs1064017	G	A	6263.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:142,293:0.67:435
chr14	96157331	rs2075770	G	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr14	96157482	rs1743530	C	T	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr14	96157698	rs1748958	A	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr14	96556846	rs61985272	C	T	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:42,68:0.62:110
chr14	96556914	rs2093722	T	C	7578.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	96557121	rs10148419	T	C	6692.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr14	96671207	rs71103505	GGGTGGGGAC	G	3687.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	96703484	rs1046248	C	T	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:148,66:0.31:214
chr14	96703553	rs1800515	G	A	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:33,81:0.71:114
chr14	96704361	rs871547	G	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr14	96707457	rs5224	A	G	12488.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr14	96728943	.	C	CT	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.067;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=1.157;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr14	96728961	rs3073017	TTTG	T	144.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.271;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=2.392;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.51;ReadPosRankSum=-1.137;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:8,9:0.53:17
chr14	96728964	rs11848191	G	T	53.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.910;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr14	96730142	rs2071084	A	G	5043.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr14	96734584	rs11160324	T	A	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr14	96742603	rs12893091	G	A	6409.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr14	96757361	rs10454690	T	A	923.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	96758160	rs2275022	C	T	271.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	96761557	rs1770547	A	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	96768514	rs3215949	G	GA	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:4,53:0.93:57
chr14	96770952	rs36013915	C	CA	750.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.561;QD=11.37;ReadPosRankSum=-0.962;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:14,52:0.79:66
chr14	96771959	rs2289622	A	G	4899.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	96777408	rs3759602	T	C	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr14	96777468	rs3759601	G	C	6711.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr14	96779895	rs1890914	A	G	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.34;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr14	96781912	rs9323945	T	C	5085.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr14	96797724	rs1822372	G	A	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	96813703	rs4905483	A	T	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	96829290	rs12434329	G	A	5855.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr14	96848565	.	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.172;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.139;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chr14	96852071	rs1545280	T	C	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	96916228	rs10444759	C	T	2063.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=37.52;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	96916232	rs11424079	G	GT	1825.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;QD=35.80;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	96922575	.	CAAAA	C,CA	917.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=8.966;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=29.60;ReadPosRankSum=0.462;SOR=5.353;set=HC	GT:AD:AF:DP	1/2:2,16,13:0.52,0.42:31
chr14	96922752	rs2369679	C	G	8280.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr14	96939108	rs60920648	T	C	869.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.128;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.53;ReadPosRankSum=0.777;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:16,40:0.71:56
chr14	96987154	.	G	GTA	354.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr14	96987437	rs10139164	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:19,18:0.49:37
chr14	96993995	rs7146883	A	G	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr14	96998621	.	TTGTG	T,TTG	1755.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.14;QD=30.27;SOR=1.733;set=HC	GT:AD:AF:DP	1/2:0,14,44:0.24,0.76:58
chr14	97022123	rs146485027	AT	A	567.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chr14	97299853	rs2145635	A	G	4438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.998;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.10;ReadPosRankSum=1.793;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:83,211:0.72:294
chr14	97300065	rs188914224	A	G	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:7,40:0.85:47
chr14	97312642	rs1951311	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr14	97321689	rs2230532	C	T	2682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=-0.525;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:427,176:0.29:603
chr14	98217929	rs12893126	T	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=0.000;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr14	98435696	rs2124843	T	C	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr14	98444253	rs8015127	C	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=1.164;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	98444285	rs12890382	G	C	1949.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.22;ReadPosRankSum=-0.427;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:21,86:0.80:107
chr14	98444369	rs8016584	T	C	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	99392468	rs200318	C	G	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	99642360	rs1152783	C	G	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr14	99642647	rs2487507	T	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,49:0.37:131
chr14	99737635	.	G	GCGCCGCTGC	1900.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DP=384;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=3.938;QD=6.79;ReadPosRankSum=1.280;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:222,58:0.21:280
chr14	99961830	rs2069492	T	C	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr14	99981858	rs11621993	G	A	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:1,124:0.99:125
chr14	99988724	rs2400681	A	G	232.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	100002473	rs12882209	A	G	7776.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	100039109	rs7143453	C	G	2416.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:254,137:0.35:391
chr14	100046271	rs34139518	T	TC	22023.73	.	AC=2;AF=1.00;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr14	100069742	rs8007401	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr14	100119238	rs3825570	G	T	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:101,58:0.36:159
chr14	100125721	rs7145262	C	T	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:39,81:0.68:120
chr14	100125731	rs11621678	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:91,43:0.32:134
chr14	100135306	rs12436072	G	A	3806.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:58,155:0.73:213
chr14	100141689	rs7158073	T	C	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.703;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:181,74:0.29:255
chr14	100150975	rs61984440	T	C	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr14	100158241	rs4900442	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:78,36:0.32:114
chr14	100161941	.	T	TTTATTATTA	328.74	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr14	100166228	rs3742377	G	A	1233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.830;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=3.368;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=3.53;ReadPosRankSum=2.017;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:262,88:0.25:350
chr14	100166300	rs943881	T	C	7126.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:112,325:0.74:437
chr14	100166489	rs943880	G	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr14	100172899	rs2273839	A	G	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.77;ReadPosRankSum=-0.515;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:5,22:0.81:27
chr14	100174092	rs34955990	A	AT	459.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=-0.916;QD=5.41;ReadPosRankSum=0.137;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:45,40:0.47:85
chr14	100174178	rs36018216	G	A	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr14	100182082	rs3752957	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.869;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=4.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.808;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:72,30:0.29:102
chr14	100184589	rs7151522	A	G	1677.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	100188144	rs2273840	A	C	255.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:27,13:0.33:40
chr14	100189423	rs12896665	A	G	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr14	100192685	rs141174869	G	GGGGCTGCT	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr14	100341430	rs1191121	A	G	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr14	100344698	rs1191118	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	100357643	rs1191100	C	T	7065.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr14	100360855	rs1191098	A	G	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	100404351	rs2295787	T	C	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	100438325	.	C	CCCG	407.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=1.258;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr14	100563943	rs3206354	G	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,83:0.61:136
chr14	100607360	rs1951486	T	C	2600.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:41,107:0.72:148
chr14	100613093	rs2236317	C	T	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:208,91:0.30:299
chr14	100615205	rs2281660	G	C	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:44,19:0.30:63
chr14	100615665	rs4905936	T	C	7655.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr14	100615961	rs4905937	C	T	5062.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:512,275:0.35:787
chr14	100625902	rs7157599	C	T	4763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=0.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.61;ReadPosRankSum=-1.753;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:103,223:0.68:326
chr14	100625964	rs61165113	G	A	1815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=1.300;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:45,82:0.65:127
chr14	100740904	rs4905942	G	C	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:10,10:0.50:20
chr14	100758502	rs11557208	G	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=-0.298;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:90,32:0.26:122
chr14	100759046	rs3825555	C	A	16311.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr14	100759277	rs3742379	C	T	6970.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:163,309:0.65:472
chr14	100772612	rs201377398	CCT	C	5279.73	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:79,135:0.63:214
chr14	100772672	rs11557209	G	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	100792093	rs9324019	C	G	3468.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:77,139:0.64:216
chr14	100792220	rs7155877	C	T	25886.77	.	AC=2;AF=1.00;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	1/1:0,977:1.00:977
chr14	100792482	rs1951519	C	A	7935.77	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:161,362:0.69:523
chr14	100795338	rs8015259	G	C	3325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.19;ReadPosRankSum=-1.328;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:436,205:0.32:641
chr14	100795619	rs45581841	C	T	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.726;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=14.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=1.665;SOR=3.138;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr14	100795625	rs45602334	G	A	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.683;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=13.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.32;ReadPosRankSum=2.132;SOR=2.935;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr14	100795630	rs4905950	C	T	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr14	100795663	rs10147903	G	A	1816.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:44,80:0.65:124
chr14	100796029	rs3742381	C	T	99.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr14	100801423	rs2234532	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	100803364	rs2234530	A	G	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	100803655	rs2234528	C	A	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	100808493	rs5810992	G	GA	3611.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr14	100808510	rs1373	T	A	3162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=0.933;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:64,142:0.69:206
chr14	100808845	rs9453	G	A	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr14	100813077	rs941923	T	C	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:46,103:0.69:149
chr14	100820980	rs1009812	G	A	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr14	100826773	rs2234524	C	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	100831835	rs1998902	C	T	542.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.74;QD=27.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	100831916	.	CAAA	C	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.413;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr14	100832065	rs200760783	CTT	C	138.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=3.233;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.63;ReadPosRankSum=-0.035;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr14	100832252	rs724392	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:27,35:0.56:62
chr14	100832282	rs2146105	C	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr14	100832391	rs724391	T	C	3279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=1.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.96;ReadPosRankSum=1.781;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:79,156:0.66:235
chr14	100847437	rs2273801	A	G	1542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=3.381;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=-1.475;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:237,91:0.28:328
chr14	100847523	rs2181170	T	C	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr14	100847617	rs34331240	C	T	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:172,84:0.33:256
chr14	100847707	rs2273800	A	G	1278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=5.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=-0.570;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:189,78:0.29:267
chr14	100847930	rs3742387	A	G	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.42;ReadPosRankSum=-1.527;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:146,85:0.37:231
chr14	100934602	rs4905966	C	T	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr14	101005215	rs12893951	T	C	2674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.63;ReadPosRankSum=1.837;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:318,157:0.33:475
chr14	101007072	rs6575788	C	G	2740.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	101012779	.	C	G	1068	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=3;HapScore=1;MGOF=34;MMLQ=23;MQ=54.91;NF=33;NR=17;PP=1068;QD=22.0554242509;SC=CCTCGCCCCGCCCCGGCCCTC;SbPval=0.55;Source=Platypus;TC=50;TCF=33;TCR=17;TR=50;WE=101012787;WS=101012769;set=Platypus	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	101012796	.	C	G	1591	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=3;HapScore=1;MGOF=27;MMLQ=23;MQ=56.53;NF=53;NR=35;PP=1591;QD=18.4746728699;SC=CCTCGCCCCGCCCCGGCCCTC;SbPval=0.57;Source=Platypus;TC=91;TCF=54;TCR=37;TR=88;WE=101012804;WS=101012786;set=Platypus	GT:AD:AF:DP	0/1:3,88:0.97:91
chr14	101012813	.	C	G	2411	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=3;HapScore=1;MGOF=12;MMLQ=23;MQ=58.1;NF=82;NR=55;PP=2411;QD=17.8523446171;SC=CCTCGCCCCGCCCCGGCCCTC;SbPval=0.46;Source=Platypus;TC=159;TCF=97;TCR=62;TR=137;WE=101012841;WS=101012803;set=Platypus	GT:AD:AF:DP	0/1:22,137:0.86:159
chr14	101138230	rs8011237	A	C	7894.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr14	101193523	rs114490877	T	G	803.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=1.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=1.178;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:152,56:0.27:208
chr14	101194944	rs10151914	T	G	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	101198417	rs6575799	A	G	8182.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr14	101198609	rs77235285	C	T	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:55,103:0.65:158
chr14	101200445	rs17577779	T	C	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr14	101200645	rs1802710	T	C	26022.77	.	AC=2;AF=1.00;AN=2;DB;DP=1008;MQ=60.02;set=Intersection	GT:AD:AF:DP	1/1:1,1006:1.00:1007
chr14	101301012	rs10132552	T	C	871.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr14	101301261	rs11160606	C	T	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr14	101302463	rs55996894	G	C	1374.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr14	101302800	rs12889884	C	G	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.716;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.358;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr14	101311731	rs139003317	CCCT	C	7540.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:94,189:0.67:283
chr14	101349017	rs6575805	A	G	4391.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:115,200:0.63:315
chr14	101364088	rs34074442	C	T	331.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=41.47;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr14	101364095	.	G	GT	354.74	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=39.42;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr14	101403072	rs1956732	T	C	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=-0.728;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	101403075	rs1956731	C	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=30.18;ReadPosRankSum=-0.728;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr14	101406011	rs1951026	G	A	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:34,42:0.55:76
chr14	101411953	rs12433065	A	G	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.12;ReadPosRankSum=-0.495;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:19,61:0.76:80
chr14	101412173	rs11847325	G	C	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr14	101418192	rs10713875	TG	T	1572.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	101420572	rs8015089	G	A	241.89	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr14	101421903	rs72700527	G	A	214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.58;ReadPosRankSum=1.034;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr14	101429568	rs16791	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr14	101429659	rs17172	G	A	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr14	101431194	rs4547276	A	G	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:55,135:0.71:190
chr14	101432440	rs111435301	C	CAGA	9315.73	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:110,234:0.68:344
chr14	101433469	rs67466596	A	T	2484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.36;ReadPosRankSum=-0.842;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:56,117:0.68:173
chr14	101433552	rs2145502	C	T	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr14	101435371	rs12432302	A	G	1875.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:53,89:0.63:142
chr14	101436159	rs34955121	GT	G	1457.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:18,48:0.73:66
chr14	101439870	rs1956727	G	T	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:37,55:0.60:92
chr14	101439916	rs1956726	T	G	2813.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:81,126:0.61:207
chr14	101440072	rs150296823	CTTG	C	6422.73	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:84,164:0.66:248
chr14	101442218	rs12893444	A	G	5430.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:125,251:0.67:376
chr14	101442692	rs28586880	T	G	414.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr14	101447517	rs10131435	A	G	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:36,62:0.63:98
chr14	101448425	rs75928883	C	G	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:76,180:0.70:256
chr14	101452574	rs4906029	T	C	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:22,62:0.74:84
chr14	101453344	rs3742401	G	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:57,95:0.62:152
chr14	101454578	rs74797707	A	G	5818.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:141,268:0.66:409
chr14	101454594	rs78341223	A	G	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:120,216:0.64:336
chr14	101489858	rs12892719	C	T	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr14	101492224	rs7141987	T	C	1126.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:27,52:0.66:79
chr14	101492548	rs12586258	C	T	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr14	101495787	rs4906031	G	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	101496145	rs9324030	A	G	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:26,46:0.64:72
chr14	101496574	rs12435041	C	T	1734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.40;ReadPosRankSum=-0.185;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr14	101496579	rs12435042	C	G	1664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=31.41;ReadPosRankSum=-0.012;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr14	101498483	rs8018238	C	T	1215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=0.491;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:18,53:0.75:71
chr14	101498525	rs139804052	GTTTTT	G	756.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.03;ReadPosRankSum=1.406;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:1,20:0.95:21
chr14	101506158	.	TC	T	225.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=9.232;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.04;ReadPosRankSum=1.349;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:185,32:0.15:217
chr14	101507727	rs12894467	C	T	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-0.705;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:39,92:0.70:131
chr14	101531734	rs201007039	G	A	1710.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:221,101:0.31:322
chr14	101531854	rs61992671	A	G	868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=0.200;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:189,60:0.24:249
chr14	102302490	.	G	GT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.728;QD=0.32;ReadPosRankSum=0.054;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:91,18:0.17:109
chr14	102507065	rs17541540	G	C	7331.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr14	102510098	rs17541582	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr14	102548224	rs2298877	T	C	4872.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr14	102548384	rs6575895	C	T	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	102549262	rs10782495	A	G	1837.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	102550069	.	T	TA	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.083;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=0.378;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:46,37:0.45:83
chr14	102550569	rs3742429	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr14	102550803	rs4947	G	A	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr14	102551795	rs35308930	T	TTAA	6987.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	102552773	rs8004640	A	G	36966.77	.	AC=2;AF=1.00;AN=2;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:0,833:1.00:833
chr14	102552773	.	AAT	GAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=331;NR=424;PP=2947;QD=20;SC=GGCAACACGAAATTCCATCGC;SbPval=0.53;Source=Platypus;TC=779;TCF=341;TCR=438;TR=755;WE=102552783;WS=102552763;set=Platypus	GT:AD:AF:DP	1/1:24,755:0.97:779
chr14	102552775	rs3736807	T	G	36966.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=1.074;set=HC	GT:AD:AF:DP	1/1:0,817:1.00:817
chr14	102552862	.	G	A	1096.77	.	AC=1;AF=0.500;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	0/1:110,53:0.33:163
chr14	102568296	rs10873531	G	A	3778.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	102568367	rs8005905	T	A	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr14	102808330	rs12590618	C	T	5673.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr14	102814945	rs7012	G	A	3848.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr14	102873886	rs60215817	A	G	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	102894559	rs34120189	GT	G	197.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=21.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=-0.701;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:15,26:0.63:41
chr14	102894593	rs1309353	G	A	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr14	103059220	rs1057881	G	A	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:45,33:0.42:78
chr14	103177420	rs3783383	G	C	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:20,86:0.81:106
chr14	103192774	rs372942415	CT	C	348.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.052;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.752;QD=2.98;ReadPosRankSum=-0.066;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:73,44:0.38:117
chr14	103341865	rs10668366	G	GT	294.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-0.987;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr14	103388939	rs59793431	C	G	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.146;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.125;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-1.771;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,50:0.70:71
chr14	103397055	rs1190233	G	C	3284.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:62,145:0.70:207
chr14	103400003	rs35064888	T	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:7,30:0.81:37
chr14	103406368	rs2269317	C	T	5613.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:148,253:0.63:401
chr14	103412268	rs2403107	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr14	103413941	rs8007924	T	C	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	103416096	rs12590961	G	A	3002.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:74,139:0.65:213
chr14	103434530	rs2093414	T	A	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.40;SOR=2.597;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr14	103440282	rs1018550	G	T	14472.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr14	103440618	.	TAC	T	111	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=111;QD=28.5;SC=TTTTTTTACTTACACACACAC;SbPval=1.0;Source=Platypus;TC=24;TCF=1;TCR=23;TR=4;WE=103440627;WS=103440608;set=Platypus	GT:AD:AF:DP	0/1:20,4:0.17:24
chr14	103449863	rs36061149	C	CA	1260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=3.370;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.245;QD=3.84;ReadPosRankSum=1.400;SOR=0.486;set=HC	GT:AD:AF:DP	0/1:196,132:0.40:328
chr14	103523598	rs34302315	T	C	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:32,13:0.29:45
chr14	103566785	rs2297067	C	T	7193.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:145,329:0.69:474
chr14	103566835	rs2297066	C	G	6003.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:118,263:0.69:381
chr14	103567020	rs61418148	T	C	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:32,74:0.70:106
chr14	103568614	rs10131298	T	A	4511.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:105,203:0.66:308
chr14	103568729	rs10142200	A	G	3992.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:103,181:0.64:284
chr14	103568981	rs77071436	A	C	2684.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.00;ReadPosRankSum=-1.383;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:56,123:0.69:179
chr14	103570130	.	C	CGTGT	1301.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=1.247;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:33,42:0.56:75
chr14	103570132	rs151184170	C	T	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.19;ReadPosRankSum=1.943;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:30,42:0.58:72
chr14	103570134	rs147121761	C	T	1955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=2.663;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:26,50:0.66:76
chr14	103574714	rs10144543	C	T	2556.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:82,112:0.58:194
chr14	103576415	rs729184	A	G	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	103576803	rs11355422	CG	C	1637.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:26,66:0.72:92
chr14	103593950	rs1132339	C	G	12203.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr14	103595997	rs2234130	G	C	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	103596488	rs2234131	G	A	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr14	103596609	rs2234133	T	A	11912.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr14	103597565	rs749206	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	103599938	rs2234143	C	T	7281.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	103602278	rs710100	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	103802918	rs11326883	CA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=1.31;ReadPosRankSum=2.861;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:66,27:0.29:93
chr14	103852607	rs12436956	G	T	464.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr14	103852725	rs3825566	C	T	1093.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=2.351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.02;ReadPosRankSum=-0.135;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:200,72:0.26:272
chr14	103918182	rs2273702	G	C	2048.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:31,94:0.75:125
chr14	103923414	rs2273700	A	G	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr14	103923475	rs2273699	A	G	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.768;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:21,23:0.52:44
chr14	103928657	rs4906326	T	A	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	103931879	rs1116095	A	G	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.370;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.760;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:118,47:0.28:165
chr14	103932888	rs1951393	C	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	103933341	rs11320440	CA	C	1091.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.364;QD=30.33;ReadPosRankSum=0.760;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr14	103933348	rs201971883	A	G	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr14	103933556	rs8010247	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.170;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr14	103934488	rs10137161	T	C	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr14	103934654	rs12892292	T	C	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.536;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-1.040;QD=7.37;ReadPosRankSum=-0.243;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr14	103946636	rs8014010	A	G	1402.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr14	103964807	rs202211193	A	AT	600.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.01;ReadPosRankSum=0.310;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:32,43:0.57:75
chr14	103986255	rs1803283	C	T	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:153,87:0.36:240
chr14	103987078	rs2071408	G	A	774.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:75,39:0.34:114
chr14	103987482	.	CCCT	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.247;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chr14	103988180	rs1136165	G	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:57,31:0.35:88
chr14	103995489	rs2765038	C	G	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr14	103996396	rs2765037	G	A	5925.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr14	103996733	rs2756138	C	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr14	104000802	rs11350625	AG	A	349.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:36,16:0.31:52
chr14	104001517	rs2756119	G	A	1754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.022;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=1.410;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.549;QD=5.13;ReadPosRankSum=2.044;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:242,100:0.29:342
chr14	104027557	rs11625397	C	T	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr14	104029246	rs2274269	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,13:0.68:19
chr14	104029378	rs2274268	C	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr14	104029792	rs2296483	G	A	1134.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr14	104129352	rs7150141	G	A	1265.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:24,52:0.68:76
chr14	104136394	rs77849213	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr14	104136469	rs11333716	CT	C	4317.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr14	104136676	.	G	GT	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=8.302;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=-0.439;SOR=0.064;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr14	104139570	rs11160757	G	T	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr14	104143928	rs4906357	A	C	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chr14	104165753	rs861539	G	A	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:37,93:0.72:130
chr14	104167075	rs861537	C	T	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr14	104167545	rs709399	G	A	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:84,178:0.68:262
chr14	104167564	rs861536	A	G	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:72,137:0.66:209
chr14	104172807	rs861531	C	A	4187.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:112,195:0.64:307
chr14	104172877	rs3212061	C	T	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr14	104174825	rs1799795	G	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:34,17:0.33:51
chr14	104177190	.	AAC	A,AACACACACAC,AACACACAC	1807.73	.	AC=1,1,0;AF=0.500,0.500,0.00;AN=2;DP=89;set=Intersection	GT:AF:DP	1/2:0.70,0.25:79
chr14	104193024	rs79445108	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.432;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.114;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:46,20:0.30:66
chr14	104194196	rs1535100	C	G	8232.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr14	104194278	rs1535099	C	T	4469.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr14	104199491	rs143367739	G	GAAAC	2711.73	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr14	104261002	.	TA	T	326.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918;ClippingRankSum=0.000;DP=258;ExcessHet=3.0103;FS=4.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.362;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:190,57:0.23:247
chr14	104378852	rs8095	G	A	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:202,113:0.36:315
chr14	104394835	rs9324065	T	C	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr14	104394850	rs9324066	C	T	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.041;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=0.760;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:97,47:0.33:144
chr14	104429302	rs140667603	A	AGT,AGTGT	500.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=23;set=Intersection	GT:AF:DP	1/1:0.95:19
chr14	104429453	rs6576013	A	G	2933.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr14	104436931	rs11851097	C	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:139,55:0.28:194
chr14	104441925	rs10147923	C	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr14	104452405	rs10143030	C	G	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.729;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:72,18:0.20:90
chr14	104452640	rs10143389	G	A	952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=2.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=1.204;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:141,56:0.28:197
chr14	104465037	rs10133836	T	C	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.98;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr14	104470686	rs28391043	G	A	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:25,20:0.44:45
chr14	104470698	rs151098927	GTTTATTTATTTA	G,GTTTATTTA	960.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;set=Intersection	GT:AF:DP	1/2:0.50,0.50:24
chr14	104471857	rs12147828	C	T	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr14	104473253	rs4900607	A	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr14	104475034	rs4906401	A	G	230.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr14	104481016	rs7150795	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr14	104481083	rs11160779	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:158,74:0.32:232
chr14	104481200	rs59025288	A	AT	1426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.471;QD=4.59;ReadPosRankSum=0.241;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:208,103:0.33:311
chr14	104484346	rs34317359	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:3,17:0.85:20
chr14	104484646	rs12589669	T	C	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:38,81:0.68:119
chr14	104491086	rs72042212	TACACACACACAC	T,TACACACAC	792.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.75;SOR=2.636;set=HC	GT:AD:AF:DP	1/2:0,6,15:0.29,0.71:21
chr14	104497543	rs10135507	C	T	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=1.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=-1.361;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:168,84:0.33:252
chr14	104498472	rs4906405	G	A	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	104500427	rs10150865	A	G	8014.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	104500528	.	TTC	T	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.775;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=0.919;QD=1.89;ReadPosRankSum=-0.232;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr14	104501551	rs3830999	AT	A	580.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr14	104518453	rs7150461	A	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr14	104559623	rs941952	T	C	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	104561998	rs1770983	T	C	12018.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr14	104563874	rs7156718	C	T	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr14	104570904	rs1744299	T	C	6556.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr14	104571826	rs1744300	A	G	2695.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr14	104573690	rs1744301	A	G	3858.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	104575466	rs1771012	C	T	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr14	104624342	rs28718558	C	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr14	104639644	rs11622217	C	T	4877.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:94,214:0.69:308
chr14	104640011	rs2275593	T	C	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.611;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-0.267;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr14	104640109	.	C	T	721.77	.	AC=1;AF=0.500;AN=2;DP=119;set=Intersection	GT:AD:AF:DP	0/1:78,40:0.34:118
chr14	104641612	rs4906422	T	C	7265.77	.	AC=1;AF=0.500;AN=2;DB;DP=1052;set=Intersection	GT:AD:AF:DP	0/1:660,390:0.37:1050
chr14	104641792	rs2487305	C	T	4800.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:106,206:0.66:312
chr14	104642341	rs2487304	A	G	16697.77	.	AC=2;AF=1.00;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	1/1:0,647:1.00:647
chr14	104642422	rs3742947	A	G	3389.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:335,193:0.37:528
chr14	104643409	rs2487303	A	G	9332.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr14	104643421	rs2487302	T	C	5021.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:148,237:0.62:385
chr14	104643721	rs2487301	C	A	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:39,150:0.79:189
chr14	104643859	rs2487300	A	G	2430.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:32,94:0.75:126
chr14	104644099	rs2497297	T	C	4459.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:131,212:0.62:343
chr14	104644147	rs11621644	C	T	1690.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:154,92:0.37:246
chr14	104645755	rs35751202	G	GC	1065.73	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr14	104647224	rs884996	C	T	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=2.006;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.715;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr14	104710505	rs7142555	T	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	104710651	rs7141507	C	T	6197.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr14	104940930	rs28453989	C	T	11826.77	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr14	104940967	rs28699424	G	A	8569.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr14	104941016	rs28715110	G	A	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:56,119:0.68:175
chr14	105055291	rs3840008	TG	T	1915.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	105055304	rs11160811	A	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr14	105055359	rs3803318	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr14	105057948	rs3803317	C	T	3727.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr14	105059573	rs28656783	C	T	4164.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	105060024	rs12879330	A	G	4645.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=2.437;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	105060029	rs12880651	T	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.00;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr14	105063253	rs11629201	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr14	105070791	rs3803313	G	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr14	105167807	rs4983530	C	T	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	105170085	rs118174518	G	C	1083.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr14	105172315	rs79559717	G	A	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,28:0.39:71
chr14	105173862	.	ACCCCACCCCCAC	A	3012.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.079;QD=17.83;ReadPosRankSum=-1.014;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:90,79:0.47:169
chr14	105177351	rs3840006	CA	C	11292.73	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:165,327:0.66:492
chr14	105178089	rs4983531	T	C	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.18;ReadPosRankSum=2.348;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:19,36:0.65:55
chr14	105178098	rs4983532	G	C	1276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=3.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.17;ReadPosRankSum=2.005;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:15,32:0.68:47
chr14	105179043	rs4497619	G	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:25,57:0.70:82
chr14	105179081	rs10144190	G	A	1864.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr14	105179194	rs10133301	T	C	4701.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:111,219:0.66:330
chr14	105180484	rs9672043	C	T	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:47,107:0.69:154
chr14	105180565	rs4983535	T	C	5838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.93;ReadPosRankSum=1.311;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:123,268:0.69:391
chr14	105180706	rs1128840	A	C	7538.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:144,329:0.70:473
chr14	105196230	rs80097179	A	C	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.72;QD=45.23;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	105196235	rs34672588	G	A	7475.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.75;QD=42.72;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr14	105196365	rs33958252	T	C	8112.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr14	105201596	rs7149183	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	105207134	rs3803307	A	G	7785.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr14	105208037	rs4983539	A	C	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr14	105208057	rs4983384	C	T	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	105208393	rs75268661	G	A	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:50,29:0.37:79
chr14	105209667	rs4587901	A	T	3403.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:54,138:0.72:192
chr14	105211221	rs12432802	C	T	3151.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:65,140:0.68:205
chr14	105211426	rs7155192	G	A	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	105213343	rs6644	A	G	7960.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	105213376	rs10254	C	T	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:129,75:0.37:204
chr14	105219467	rs3809453	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr14	105219976	rs12889167	T	C	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr14	105220210	rs7151424	G	A	4108.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	105222037	rs1132975	C	T	5054.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr14	105223194	rs34992074	C	CAT	4686.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr14	105223525	rs12590163	T	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr14	105223694	rs143402483	CAT	C	5517.73	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:362,159:0.31:521
chr14	105233095	rs2498804	C	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr14	105238591	rs55839843	CCTGAG	C	4480.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr14	105238592	.	C	G	1210	.	AC=2;AF=1.00;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=23;MQ=60.22;NF=24;NR=10;PP=1210;QD=36.6109180161;SC=CAGCAGGCTCCTGAGGTGAGG;SbPval=0.34;Source=Platypus;TC=86;TCF=65;TCR=21;TR=34;WE=105238613;WS=105238581;set=Platypus	GT:AD:AF:DP	1/1:52,34:0.40:86
chr14	105238597	.	GTGAGGGCGA	G	1216	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=39;NR=19;PP=1216;QD=21.4655172414;SC=GGCTCCTGAGGTGAGGGCGAG;SbPval=0.8;Source=Platypus;TC=78;TCF=47;TCR=31;TR=58;WE=105238613;WS=105238581;set=Platypus	GT:AD:AF:DP	0/1:20,58:0.74:78
chr14	105238602	rs200121190	GGCGA	G	1432.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=-0.736;QD=12.68;ReadPosRankSum=1.748;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:72,41:0.36:113
chr14	105238604	rs2498800	C	T	2570.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:41,70:0.63:111
chr14	105239192	rs2494732	T	C	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	105239894	rs1130233	C	T	6046.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr14	105242228	rs2498797	T	C	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr14	105242831	rs3001371	C	T	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr14	105242966	rs2494735	T	C	11011.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr14	105246325	rs2494737	T	A	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	105246407	rs3730358	G	A	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.47;ReadPosRankSum=-0.082;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:185,57:0.24:242
chr14	105246686	rs2494738	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr14	105258893	rs2494749	A	G	5043.77	.	AC=1;AF=0.500;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	0/1:653,309:0.32:962
chr14	105267579	rs12878684	A	G	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:297,126:0.30:423
chr14	105268104	rs10141867	G	A	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:268,154:0.36:422
chr14	105268228	rs4983387	G	A	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:213,109:0.34:322
chr14	105309252	rs12895703	T	C	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.94;SOR=1.632;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	105309256	rs12894371	A	T	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=1.630;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	105309608	rs12878750	C	T	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr14	105335049	rs12431850	C	T	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	105344111	rs78118267	G	A	716.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr14	105344157	rs75824199	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr14	105344188	rs370824172	TCCCC	T	4058.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr14	105344293	rs61995995	C	T	26447.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr14	105344318	rs2304758	G	A	26876.77	.	AC=2;AF=1.00;AN=2;DB;DP=636;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr14	105344347	rs2304757	C	G	14214.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr14	105344419	rs34009344	A	G	5934.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	105344603	rs41310934	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	105344761	rs41317300	C	T	13873.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:2,526:1.00:528
chr14	105344872	rs61995998	C	T	1278.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:128,67:0.34:195
chr14	105349220	rs2028415	T	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	105349388	rs2028414	A	C	9020.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr14	105349877	rs10145119	C	T	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.33;SOR=1.336;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr14	105349886	rs10145122	C	T	4340.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	105349891	rs10145270	G	A	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.72;SOR=1.531;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	105349897	rs10145031	A	G	3571.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.39;SOR=1.463;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr14	105350178	rs45449696	C	T	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:80,55:0.41:135
chr14	105350355	rs2841236	A	G	15929.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,606:1.00:606
chr14	105350799	rs9788593	C	T	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr14	105350868	rs9788594	C	T	7750.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr14	105351637	rs2582549	A	G	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	105351673	rs894038	C	T	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr14	105351902	.	C	T	1333.77	.	AC=1;AF=0.500;AN=2;DP=82;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr14	105352255	rs2251389	T	A	11682.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr14	105352884	rs150426191	CGCAGGA	C	9082.73	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:121,228:0.65:349
chr14	105354293	rs2582548	A	G	7699.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr14	105356137	rs2919629	G	C	7427.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr14	105356240	.	CAAATGGATGGAT	CGATGGAT,C	416.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=36;set=Intersection	GT:AF:DP	0/1:0.52:33
chr14	105356241	.	A	G	406	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=46;MMLQ=23;MQ=56.56;NF=4;NR=21;PP=406;QD=17.6308485019;SC=ATGGATGGACAAATGGATGGA;SbPval=0.87;Source=Platypus;TC=32;TCF=8;TCR=24;TR=25;WE=105356259;WS=105356230;set=Platypus	GT:AD:AF:DP	1/1:7,25:0.78:32
chr14	105356247	.	ATGGATGG	A	412.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.522;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=0.084;QD=12.14;ReadPosRankSum=-3.696;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr14	105359306	rs3742939	G	C	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr14	105359827	rs2247712	T	C	7667.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr14	105360746	rs2841244	T	C	6558.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr14	105363157	rs7152667	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr14	105363202	rs10147348	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	105393556	rs2841280	G	C	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	105414280	rs2819429	T	G	3586.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:502,220:0.30:722
chr14	105415352	rs12890949	G	C	21096.77	.	AC=2;AF=1.00;AN=2;DB;DP=807;MQ=59.98;set=Intersection	GT:AD:AF:DP	1/1:0,805:1.00:805
chr14	105415925	.	C	T	11296.77	.	AC=1;AF=0.500;AN=2;DP=790;set=Intersection	GT:AD:AF:DP	0/1:274,514:0.65:788
chr14	105416220	rs2819435	T	A	18313.77	.	AC=2;AF=1.00;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	1/1:0,689:1.00:689
chr14	105417894	rs2819440	C	G	3984.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:431,230:0.35:661
chr14	105452035	rs10150682	A	G	854.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr14	105452221	.	T	TGCGGGGCCCGGGCCCGGGCCCAGGACAC	494.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.364;QD=13.02;ReadPosRankSum=-1.424;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr14	105455877	rs2241866	C	G	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:41,74:0.64:115
chr14	105457771	rs2247140	A	G	4026.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.94;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr14	105457771	.	ATGATCTCCT	GTGATCTCCG,GTGATCTCCT	793	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=22;MQ=60.0;NF=37,63;NR=22,35;PP=793,421;QD=14.3469131333;SC=GCCGTGCCTCATGATCTCCTC;SbPval=0.46;Source=Platypus;TC=98;TCF=63;TCR=35;TR=59,98;WE=105457788;WS=105457761;set=Platypus	GT:AF:DP	0/1:0.60:98
chr14	105457780	rs2289454	T	G	1437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=2.300;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:44,69:0.61:113
chr14	105459140	rs2241865	A	C	360.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr14	105461067	rs894039	C	T	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:2,197:0.99:199
chr14	105477507	rs7144401	G	A	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:68,93:0.58:161
chr14	105477613	rs7145565	T	C	3457.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:123,167:0.58:290
chr14	105478102	rs3803294	G	A	3726.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:458,220:0.32:678
chr14	105609335	rs10149229	A	G	2560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=2.945;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:405,163:0.29:568
chr14	105611282	rs2272591	A	G	2205.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:310,140:0.31:450
chr14	105614032	rs2242636	C	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-1.185;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr14	105615026	rs2242634	A	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr14	105617042	rs1057744	C	T	2369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=1.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.224;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:386,148:0.28:534
chr14	105617550	rs3830678	C	CGCAGCCCCA	2930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=61.82;MQRankSum=9.863;QD=12.52;ReadPosRankSum=1.770;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:149,85:0.36:234
chr14	105618670	rs2238287	T	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:112,44:0.28:156
chr14	105622056	rs2816679	A	G	3605.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:423,212:0.33:635
chr14	105634773	.	C	G	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.05;ReadPosRankSum=-1.752;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr14	105643619	rs10139596	G	A	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,32:0.31:102
chr14	105643652	rs10139450	A	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr14	105644151	rs1882848	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr14	105647562	rs67388067	GGCGGGGGCCGCGAGCTCT	G	178.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,7:0.35:20
chr14	105676048	rs3087836	G	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:28,31:0.53:59
chr14	105686570	rs8005486	T	C	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,62:0.34:184
chr14	105692697	rs12883636	G	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:62,38:0.38:100
chr14	105695273	rs112151376	T	A	2382.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:347,146:0.30:493
chr14	105715327	rs2816604	A	C	254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.609;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr14	105833623	rs111376436	C	T	3422.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:442,201:0.31:643
chr14	105905126	rs4983620	C	T	3843.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.142;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.306;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.29;ReadPosRankSum=-0.612;SOR=0.460;set=HC	GT:AD:AF:DP	1/1:1,151:0.99:152
chr14	105911639	rs6576102	G	A	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	105916420	rs4983409	C	T	16682.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr14	105924538	rs7492915	G	A	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr14	105924786	rs4074001	G	A	5857.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	105929443	rs7143366	C	T	7226.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr14	105929745	rs74092385	C	T	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr14	105930406	rs4983413	G	A	3921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=2.318;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:418,232:0.36:650
chr14	105930923	rs11845995	G	A	8460.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr14	105931585	rs4983339	A	G	2405.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr14	105932636	rs34378689	C	CAG	3213.73	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:29,77:0.73:106
chr14	105935721	rs10150545	A	G	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr14	105935824	rs13707	G	A	10697.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:1,398:1.00:399
chr14	105936064	rs10150915	A	G	2734.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr14	105936100	rs144496498	A	ACCTTGGCTGGTGGCC	6872.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr14	105945891	rs11849001	C	T	26355.77	.	AC=2;AF=1.00;AN=2;DB;DP=987;set=Intersection	GT:AD:AF:DP	1/1:0,983:1.00:983
chr14	105953474	rs7160858	G	T	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr14	105953595	rs7140395	T	C	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr14	105954705	rs55633823	C	T	9369.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:200,439:0.69:639
chr14	105960319	rs61641418	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.49;ReadPosRankSum=0.103;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr14	105962234	rs7494350	T	C	6002.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	105962369	rs7494717	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:1,180:0.99:181
chr14	105963944	rs4983426	CT	TC	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr14	105996049	rs10569304	TGCC	T	9787.73	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:129,246:0.66:375
chr14	106054428	rs9972103	C	G	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.19;QD=30.72;SOR=1.647;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	106054456	rs61984162	A	G	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	106066454	rs4983454	T	C	4088.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr14	106067618	rs12884681	G	A	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr14	106091329	rs8015545	G	C	2810.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:86,128:0.60:214
chr14	106091504	rs1042306	A	G	4687.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:169,215:0.56:384
chr14	106091555	rs35035896	C	T	5202.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:196,239:0.55:435
chr14	106091697	rs56210451	T	C	9205.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:334,445:0.57:779
chr14	106091743	rs35171885	CA	C	13846.73	.	AC=1;AF=0.500;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	0/1:257,399:0.61:656
chr14	106110137	rs8009156	C	T	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr14	106110330	rs8014709	T	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr14	106173790	rs17349690	A	G	6059.77	.	AC=1;AF=0.500;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	0/1:122,282:0.70:404
chr14	106173808	rs371291470	G	A	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.379;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=83.211;MLEAC=1;MLEAF=0.500;MQ=49.26;MQRankSum=-9.772;QD=3.01;ReadPosRankSum=-0.959;SOR=3.995;set=HC	GT:AD:AF:DP	0/1:275,69:0.20:344
chr14	106173971	rs10220590	T	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.49;MQRankSum=-1.173;QD=5.44;ReadPosRankSum=-0.612;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr14	106174654	.	C	G	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.263;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-8.510;QD=1.10;ReadPosRankSum=1.950;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:104,22:0.17:126
chr14	106188045	rs11624491	C	T	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr14	106188230	rs1134590	C	T	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.89;QD=28.04;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr14	106188309	rs11624581	C	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr14	106208082	rs11621259	G	T	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.80;QD=47.34;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr14	106208086	rs1045853	A	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.23;QD=41.60;SOR=3.193;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	106209340	rs11552998	T	C	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=25.33;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr14	106236128	rs12890621	T	A	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	106236451	rs12895160	T	G	6040.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.45;QD=42.54;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr14	106236458	rs11628528	C	T	5892.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.41;QD=43.65;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr14	106237105	rs2753552	A	G	5450.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr14	106237642	rs2983777	T	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.85;QD=25.41;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	106237811	rs11621054	C	T	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr14	106303325	rs3764172	A	G	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr14	106303699	rs10139433	G	A	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr14	106303846	rs1005582	C	T	8855.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr14	106303948	rs1005581	A	G	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr14	106304020	.	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.986;SOR=0.353;set=HC	GT:AD:AF:DP	0/1:55,10:0.15:65
chr14	106304899	rs762807	G	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr14	106306841	rs709589	C	T	4966.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr14	106307054	rs2753491	C	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	106307418	rs2753492	G	A	11621.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr14	106308199	rs77773513	C	T	662.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:81,39:0.33:120
chr14	106311030	rs12589570	GT	AC	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	106311374	rs2856940	A	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr14	106318248	rs1059713	A	T	9186.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr14	106318440	rs2256589	T	C	8143.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.26;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr14	106318450	rs2753504	G	A	8278.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr14	106321590	rs12365	C	A	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr14	106329435	rs1950943	T	G	11911.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr14	106329449	.	ATG	A	13351.73	.	AC=2;AF=1.00;AN=2;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.41;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,294:1.00:294
chr14	106329451	.	GTA	ACC	2937	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=17;MMLQ=21;MQ=59.92;NF=141;NR=102;PP=2937;QD=20;SC=AGACGTCCATGTAGTAGTAGT;SbPval=0.58;Source=Platypus;TC=265;TCF=151;TCR=114;TR=243;WE=106329461;WS=106329440;set=Platypus	GT:AD:AF:DP	1/1:22,243:0.92:265
chr14	106329453	.	A	ACC	13303.73	.	AC=2;AF=1.00;AN=2;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr14	106329919	rs3752943	G	A	11246.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr14	106330320	rs2857385	A	C	20346.77	.	AC=2;AF=1.00;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	1/1:0,752:1.00:752
chr14	106330370	rs2857384	G	A	24762.77	.	AC=2;AF=1.00;AN=2;DB;DP=975;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,972:1.00:972
chr14	106346740	rs2244932	A	G	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,30:0.35:85
chr14	106346795	rs2244930	G	T	2246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=-1.128;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:46,106:0.70:152
chr14	106346990	rs2244917	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.404;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=1.115;SOR=1.052;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr14	106347467	rs2516984	A	C	19634.77	.	AC=2;AF=1.00;AN=2;DB;DP=739;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,738:1.00:738
chr14	106350569	rs2516978	C	T	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr14	106350623	rs2753523	G	C	7921.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr14	106350696	rs2857368	A	G	14591.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr14	106354353	rs2516972	C	T	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr14	106356974	rs2753529	G	C	3526.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr14	106357749	rs2254707	C	T	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr14	106359259	rs2857366	A	G	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr14	106359327	rs3021114	GC	AG	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr14	106361418	rs2753533	T	C	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr14	106361561	rs61993631	GC	AT	7103.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.79;QD=44.68;SOR=1.305;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr14	106361564	rs61993633	A	T	7079.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=46.58;SOR=1.319;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr14	106369335	rs2857353	G	A	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr14	106369534	rs2516960	A	G	11615.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr14	106370603	rs2857350	G	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr14	106375551	rs2857348	C	A	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr14	106375555	rs2516957	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr14	106375638	rs2857347	T	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr14	106376144	rs2516956	A	G	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:2,111:0.98:113
chr14	106376354	rs2516955	A	G	15491.77	.	AC=2;AF=1.00;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	1/1:2,601:1.00:603
chr14	106377944	rs2516952	C	G	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr14	106380073	rs2856850	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr14	106380174	rs2157630	C	A	2834.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.77;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr14	106382687	rs2857339	C	T	5964.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr14	106385211	.	AGTGGGGTTC	A	358.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=6.778;MLEAC=1;MLEAF=0.500;MQ=56.44;MQRankSum=-4.305;QD=11.21;ReadPosRankSum=0.338;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr14	106385221	.	AG	A	358.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.562;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=6.732;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-4.091;QD=10.87;ReadPosRankSum=-0.650;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr14	106385233	rs2857334	A	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.155;MLEAC=1;MLEAF=0.500;MQ=56.94;MQRankSum=-3.891;QD=11.89;ReadPosRankSum=-0.684;SOR=1.623;set=HC	GT:AD:AF:DP	0/1:24,13:0.35:37
chr14	106385234	rs2857333	C	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.133;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=5.172;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-4.033;QD=12.02;ReadPosRankSum=-0.238;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr14	106385245	rs2857332	C	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.439;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-3.561;QD=12.13;ReadPosRankSum=-1.016;SOR=1.411;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr14	106385332	rs2250700	G	C	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,25:0.36:69
chr14	106387999	rs61996962	C	T	868.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:22,38:0.63:60
chr14	106388588	rs2516944	A	T	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr14	106436780	rs67875134	A	G	3495.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:110,164:0.60:274
chr14	106437080	rs72715495	C	T	5198.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:120,238:0.66:358
chr14	106452628	rs7144717	T	G	4114.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:82,166:0.67:248
chr14	106452766	rs112806369	T	A	14693.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:332,661:0.67:993
chr14	106471268	rs1143505	A	G	15563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DB;DP=576;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-7.488;QD=27.26;ReadPosRankSum=2.460;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:188,383:0.67:571
chr14	106471273	rs77346190	C	T	16053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=617;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-7.071;QD=26.23;ReadPosRankSum=2.402;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:203,409:0.67:612
chr14	106471353	rs34069216	C	T	15959.77	.	AC=1;AF=0.500;AN=2;DB;DP=1115;set=Intersection	GT:AD:AF:DP	0/1:389,716:0.65:1105
chr14	106471388	rs34874585	C	A	19618.77	.	AC=1;AF=0.500;AN=2;DB;DP=1162;set=Intersection	GT:AD:AF:DP	0/1:382,770:0.67:1152
chr14	106471410	rs200773107	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.871;ClippingRankSum=0.000;DB;DP=1111;ExcessHet=3.0103;FS=12.958;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-8.443;QD=0.03;ReadPosRankSum=-9.251;SOR=2.095;set=HC	GT:AD:AF:DP	0/1:1005,103:0.09:1108
chr14	106471417	rs201932522	G	A	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.328;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=13.039;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-12.083;QD=1.68;ReadPosRankSum=-6.050;SOR=2.186;set=HC	GT:AD:AF:DP	0/1:964,112:0.10:1076
chr14	106471426	rs199743220	G	T	2145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.122;ClippingRankSum=0.000;DB;DP=1032;ExcessHet=3.0103;FS=17.082;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-14.525;QD=2.09;ReadPosRankSum=-2.218;SOR=2.351;set=HC	GT:AD:AF:DP	0/1:912,117:0.11:1029
chr14	106471437	rs114502996	G	T	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.774;ClippingRankSum=0.000;DB;DP=971;ExcessHet=3.0103;FS=17.532;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-17.673;QD=2.60;ReadPosRankSum=2.657;SOR=2.449;set=HC	GT:AD:AF:DP	0/1:841,127:0.13:968
chr14	106471509	rs113475512	C	A	2122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.214;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=5.981;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-1.735;QD=3.85;ReadPosRankSum=-5.215;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:459,92:0.17:551
chr14	106471515	rs200143794	C	A	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.637;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=3.811;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-2.157;QD=3.70;ReadPosRankSum=-7.111;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:433,75:0.15:508
chr14	106471522	rs111605692	C	T	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-2.605;QD=2.64;ReadPosRankSum=-8.279;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:431,63:0.13:494
chr14	106471528	rs35966079	C	A	8926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DB;DP=474;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-6.305;QD=18.83;ReadPosRankSum=3.712;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:232,242:0.51:474
chr14	106471534	rs36065697	A	G	8585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.935;ClippingRankSum=0.000;DB;DP=434;ExcessHet=3.0103;FS=8.159;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-9.699;QD=19.78;ReadPosRankSum=2.647;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:218,216:0.50:434
chr14	106471547	rs1143496	A	G	5012.77	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:189,215:0.53:404
chr14	106471580	rs56320742	GC	TT	6597.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;JOINED;set=Intersection	GT:AD:AF:DP	0/1:163,170:0.51:333
chr14	106471595	rs34652473	T	C	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:155,148:0.49:303
chr14	106478183	rs77628366	G	T	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr14	106478194	rs76899215	C	T	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr14	106478334	rs78574933	T	C	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.36;QD=28.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr14	106478354	rs188216744	T	C	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.82;QD=25.69;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr14	106478401	rs78225485	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.21;QD=26.32;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	106494269	rs12895651	T	C	5030.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:79,220:0.74:299
chr14	106518418	rs113047412	A	G	7249.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:146,331:0.69:477
chr14	106518848	rs2073679	T	C	12160.77	.	AC=1;AF=0.500;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	0/1:303,551:0.65:854
chr14	106578952	rs11160922	A	T	3075.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr14	106586259	rs11625174	T	G	6793.77	.	AC=1;AF=0.500;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	0/1:250,310:0.55:560
chr14	106641761	rs72695948	A	G	12330.77	.	AC=1;AF=0.500;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	0/1:287,567:0.66:854
chr14	106667810	rs112170273	C	A	16486.77	.	AC=1;AF=0.500;AN=2;DB;DP=1047;set=Intersection	GT:AD:AF:DP	0/1:328,718:0.69:1046
chr14	106667902	rs58794564	A	AC	41668.73	.	AC=2;AF=1.00;AN=2;DB;DP=1206;set=Intersection	GT:AD:AF:DP	1/1:0,1181:1.00:1181
chr14	106691657	rs34019594	T	C	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=9.135;MLEAC=1;MLEAF=0.500;MQ=45.80;MQRankSum=-4.459;QD=0.38;ReadPosRankSum=-0.399;SOR=1.696;set=HC	GT:AD:AF:DP	0/1:240,30:0.11:270
chr14	106691778	rs4470054	T	A	5806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.198;ClippingRankSum=0.000;DB;DP=1167;ExcessHet=3.0103;FS=5.624;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-27.255;QD=4.98;ReadPosRankSum=5.549;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:945,220:0.19:1165
chr14	106691792	rs4426251	A	T	690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=1239;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-16.579;QD=0.56;ReadPosRankSum=-1.251;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:1135,102:0.08:1237
chr14	106691794	rs4426252	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=1245;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-16.750;QD=0.48;ReadPosRankSum=-2.342;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:1143,100:0.08:1243
chr14	106691796	.	GTAA	G	1177.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.077;ClippingRankSum=0.000;DP=1276;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=58.22;MQRankSum=-24.817;QD=0.92;ReadPosRankSum=2.267;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:1163,111:0.09:1274
chr14	106691800	.	C	G	1080.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DP=1258;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-24.825;QD=0.86;ReadPosRankSum=2.627;SOR=1.246;set=HC	GT:AD:AF:DP	0/1:1147,109:0.09:1256
chr14	106725482	rs56069819	A	C	11229.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:444,489:0.52:933
chr14	106725517	rs140098248	A	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=942;ExcessHet=3.0103;FS=9.014;MLEAC=1;MLEAF=0.500;MQ=56.45;MQRankSum=-6.835;QD=0.98;ReadPosRankSum=-0.115;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:855,85:0.09:940
chr14	106725521	rs143792912	A	C	1053.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=952;ExcessHet=3.0103;FS=8.972;MLEAC=1;MLEAF=0.500;MQ=56.51;MQRankSum=-6.800;QD=1.11;ReadPosRankSum=0.754;SOR=1.199;set=HC	GT:AD:AF:DP	0/1:862,88:0.09:950
chr14	106725523	rs146848049	C	A	1350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=957;ExcessHet=3.0103;FS=6.707;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-6.944;QD=1.41;ReadPosRankSum=1.343;SOR=1.147;set=HC	GT:AD:AF:DP	0/1:866,89:0.09:955
chr14	106725538	rs71416657	G	T	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.259;ClippingRankSum=0.000;DB;DP=946;ExcessHet=3.0103;FS=4.340;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-7.476;QD=1.89;ReadPosRankSum=3.073;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:840,104:0.11:944
chr14	106725545	rs184685096	GT	AA	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.235;ClippingRankSum=0.000;DB;DP=953;ExcessHet=3.0103;FS=3.078;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-8.070;QD=2.00;ReadPosRankSum=4.453;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:844,107:0.11:951
chr14	106725558	.	C	A	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.744;ClippingRankSum=0.000;DP=944;ExcessHet=3.0103;FS=1.791;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-10.032;QD=2.37;ReadPosRankSum=4.882;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:828,114:0.12:942
chr14	106725574	rs12433829	T	C	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.494;ClippingRankSum=0.000;DB;DP=900;ExcessHet=3.0103;FS=1.743;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-15.088;QD=2.66;ReadPosRankSum=4.900;SOR=0.485;set=HC	GT:AD:AF:DP	0/1:781,117:0.13:898
chr14	106733216	rs201747581	T	C	2342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354;ClippingRankSum=0.000;DB;DP=1099;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-14.947;QD=2.15;ReadPosRankSum=3.596;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:961,128:0.12:1089
chr14	106733223	rs200123370	T	G	2156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=1108;ExcessHet=3.0103;FS=1.848;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-15.302;QD=1.96;ReadPosRankSum=2.665;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:976,124:0.11:1100
chr14	106733228	rs201071498	C	T	2081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.954;ClippingRankSum=0.000;DB;DP=1134;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-15.722;QD=1.85;ReadPosRankSum=1.917;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:1006,121:0.11:1127
chr14	106733254	rs200146986	G	C	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=1194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-18.267;QD=0.37;ReadPosRankSum=-3.795;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:1090,97:0.08:1187
chr14	106733261	.	G	T	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=1173;ExcessHet=3.0103;FS=1.063;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-19.787;QD=0.19;ReadPosRankSum=-4.985;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:1082,85:0.07:1167
chr14	106733437	rs112335453	G	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=5.432;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-5.984;QD=0.22;ReadPosRankSum=2.520;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:269,38:0.12:307
chr14	106733458	rs116600694	G	A	1216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.866;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=7.474;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.423;QD=4.52;ReadPosRankSum=-1.384;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:223,46:0.17:269
chr14	106733461	rs78432605	C	G	1198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=7.386;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.482;QD=4.36;ReadPosRankSum=-0.700;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:229,46:0.17:275
chr14	106733463	rs116472681	G	A	1201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=6.158;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.463;QD=4.40;ReadPosRankSum=-0.786;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:227,46:0.17:273
chr14	106733520	rs2338199	C	A	5113.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:50,185:0.79:235
chr14	106733532	rs116710349	G	A	981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.801;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=3.035;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.780;QD=4.07;ReadPosRankSum=-2.080;SOR=0.474;set=HC	GT:AD:AF:DP	0/1:199,42:0.17:241
chr14	106733555	rs8013154	A	G	866.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.656;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-3.504;QD=3.50;ReadPosRankSum=-2.143;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:210,38:0.15:248
chr14	106733593	rs4511432	G	T	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.056;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=3.462;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-7.418;QD=1.11;ReadPosRankSum=-1.516;SOR=0.447;set=HC	GT:AD:AF:DP	0/1:174,33:0.16:207
chr14	106733638	rs8013719	G	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-9.074;QD=3.43;ReadPosRankSum=0.715;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:106,20:0.16:126
chr14	106733653	rs114563889	A	C	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-8.045;QD=4.88;ReadPosRankSum=1.568;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:82,17:0.17:99
chr14	106733679	rs116541104	G	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.523;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-6.588;QD=5.11;ReadPosRankSum=2.683;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr14	106733682	rs114939362	G	C	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-6.352;QD=5.45;ReadPosRankSum=2.425;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:47,12:0.20:59
chr14	106791006	rs10148365	C	T	7477.77	.	AC=1;AF=0.500;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	0/1:279,310:0.53:589
chr14	106805380	rs201158628	GT	TG	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=834;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-18.956;QD=0.35;ReadPosRankSum=3.262;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:770,62:0.07:832
chr14	106805386	rs199616126	G	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;ClippingRankSum=0.000;DB;DP=837;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-18.671;QD=0.53;ReadPosRankSum=3.248;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:768,67:0.08:835
chr14	106805402	rs117757529	T	G	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=828;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-14.910;QD=0.67;ReadPosRankSum=1.014;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:753,70:0.09:823
chr14	106805440	rs6576153	A	G	18027.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr14	106805481	rs111274188	G	A	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-7.875;QD=0.62;ReadPosRankSum=-1.445;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:351,33:0.09:384
chr14	106805485	rs113376532	C	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.04;MQRankSum=-6.837;QD=0.49;ReadPosRankSum=-1.420;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:340,30:0.08:370
chr14	106805508	rs4462488	G	A	8406.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr14	106845193	rs10129987	C	G	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.92;QD=33.92;SOR=7.428;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr14	106845209	rs10129994	C	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr14	106858853	.	G	A	1891.77	.	AC=1;AF=0.500;AN=2;DP=143;set=Intersection	GT:AD:AF:DP	0/1:55,88:0.62:143
chr14	106859351	rs1008525	G	C	3541.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.23;QD=27.67;SOR=1.573;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr14	106859421	rs11160957	A	C	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.27;QD=32.06;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr14	106877445	rs60581578	C	T	3791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.488;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.523;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:299,113:0.27:412
chr14	106877447	rs57593057	A	ATGATCT	3865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.25;ReadPosRankSum=0.715;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:305,113:0.27:418
chr14	106877551	rs8020298	A	C	6410.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr14	106922052	rs10782500	T	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr14	106922368	rs6576168	C	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:130,63:0.33:193
chr14	106926146	rs61999675	G	A	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:135,81:0.38:216
chr14	106937467	.	G	GC	746.73	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr14	106940351	rs142032068	C	T	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.878;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=15.599;MLEAC=1;MLEAF=0.500;MQ=58.18;MQRankSum=-19.317;QD=0.79;ReadPosRankSum=-3.397;SOR=2.070;set=HC	GT:AD:AF:DP	0/1:389,57:0.13:446
chr14	106967052	rs11848941	C	A	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:311,140:0.31:451
chr14	107013201	rs2073673	G	T	14066.77	.	AC=1;AF=0.500;AN=2;DB;DP=864;set=Intersection	GT:AD:AF:DP	0/1:259,604:0.70:863
chr14	107013241	.	T	C	15820.77	.	AC=1;AF=0.500;AN=2;DP=985;set=Intersection	GT:AD:AF:DP	0/1:290,690:0.70:980
chr14	107034659	.	A	G	1163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.882;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=1.655;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=-5.026;QD=8.82;ReadPosRankSum=0.305;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:99,33:0.25:132
chr14	107034665	.	TCA	T	1041.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-5.154;QD=7.83;ReadPosRankSum=1.006;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:101,32:0.24:133
chr14	107034668	.	T	TCC	1008.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.624;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=3.865;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-4.732;QD=7.76;ReadPosRankSum=-1.759;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr14	107034679	rs370585113	C	T	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=3.791;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-4.129;QD=9.46;ReadPosRankSum=-0.358;SOR=1.120;set=HC	GT:AD:AF:DP	0/1:96,35:0.27:131
chr14	107034681	.	G	C	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DP=140;ExcessHet=3.0103;FS=3.610;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-3.988;QD=8.92;ReadPosRankSum=-0.774;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:100,39:0.28:139
chr14	107034705	rs200210193	G	A	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.323;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.249;QD=9.41;ReadPosRankSum=0.068;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:109,43:0.28:152
chr14	107034705	.	GGG	AGT	1067	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=3;HapScore=1;MGOF=38;MMLQ=28;MQ=59.96;NF=25;NR=11;PP=1067;QD=31.1241076351;SC=AGACGGGCTCGGGGCTGGTTT;SbPval=0.63;Source=Platypus;TC=132;TCF=89;TCR=43;TR=36;WE=107034715;WS=107034695;set=Platypus	GT:AD:AF:DP	1/0:96,36:0.27:132
chr14	107034707	rs201053767	G	T	1430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.458;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.300;QD=9.11;ReadPosRankSum=0.632;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:114,43:0.27:157
chr14	107034789	rs72686840	G	A	4415.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:291,138:0.32:429
chr14	107034807	rs72686841	G	A	5375.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:359,164:0.31:523
chr14	107034822	rs199503234	C	G	5653.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:423,194:0.31:617
chr14	107034846	rs199610746	TC	GT	8202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.645;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.573;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.110;QD=11.30;ReadPosRankSum=0.275;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:501,225:0.31:726
chr14	107034854	rs201350766	C	A	8633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=757;ExcessHet=3.0103;FS=1.932;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.114;QD=11.45;ReadPosRankSum=0.810;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:521,233:0.31:754
chr14	107034863	rs199809351	C	T	9314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.520;ClippingRankSum=0.000;DB;DP=800;ExcessHet=3.0103;FS=3.541;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.057;QD=11.67;ReadPosRankSum=0.037;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:542,256:0.32:798
chr14	107034869	rs200774123	AG	CA	9865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.152;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=5.433;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.035;QD=12.21;ReadPosRankSum=0.051;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:545,263:0.33:808
chr14	107034873	rs199524561	GA	CC	10172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.473;ClippingRankSum=0.000;DB;DP=846;ExcessHet=3.0103;FS=5.455;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-2.012;QD=12.05;ReadPosRankSum=-0.170;SOR=1.124;set=HC	GT:AD:AF:DP	0/1:565,279:0.33:844
chr14	107034920	rs72686843	C	T	8133.77	.	AC=1;AF=0.500;AN=2;DB;DP=1066;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:646,417:0.39:1063
chr14	107034967	rs72686844	T	C	8956.77	.	AC=1;AF=0.500;AN=2;DB;DP=1195;set=Intersection	GT:AD:AF:DP	0/1:724,467:0.39:1191
chr14	107034981	rs2731202	G	C	16526.77	.	AC=1;AF=0.500;AN=2;DB;DP=1241;set=Intersection	GT:AD:AF:DP	0/1:457,779:0.63:1236
chr14	107035002	rs200171934	A	G	12355.77	.	AC=1;AF=0.500;AN=2;DB;DP=1294;set=Intersection	GT:AD:AF:DP	0/1:845,442:0.34:1287
chr14	107035020	rs75660488	C	T	12482.77	.	AC=1;AF=0.500;AN=2;DB;DP=1254;set=Intersection	GT:AD:AF:DP	0/1:839,407:0.33:1246
chr14	107035038	rs201745085	GG	AT	13434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=1147;ExcessHet=3.0103;FS=3.482;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.77;ReadPosRankSum=0.559;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:778,363:0.32:1141
chr14	107035042	rs200794686	G	A	12952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DB;DP=1119;ExcessHet=3.0103;FS=3.482;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=-0.043;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:757,356:0.32:1113
chr14	107035064	rs113207564	G	A	11811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.228;ClippingRankSum=0.000;DB;DP=1056;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.25;ReadPosRankSum=0.641;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:729,321:0.31:1050
chr14	107035066	.	C	T	11527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DP=1039;ExcessHet=3.0103;FS=3.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.16;ReadPosRankSum=0.572;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:715,318:0.31:1033
chr14	107035068	.	C	G	11173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DP=1032;ExcessHet=3.0103;FS=2.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.241;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:709,317:0.31:1026
chr14	107035106	rs78810240	G	T	8735.77	.	AC=1;AF=0.500;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	0/1:461,421:0.48:882
chr14	107035163	rs201950873	GA	CC	4984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.426;ClippingRankSum=0.000;DB;DP=594;ExcessHet=3.0103;FS=1.309;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-13.523;QD=8.43;ReadPosRankSum=3.038;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:440,151:0.26:591
chr14	107035168	.	T	A	4927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.956;ClippingRankSum=0.000;DP=571;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-13.636;QD=8.66;ReadPosRankSum=2.351;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:425,144:0.25:569
chr14	107035182	.	T	G	2188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.749;ClippingRankSum=0.000;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-13.941;QD=4.49;ReadPosRankSum=-0.417;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:367,121:0.25:488
chr14	107035206	.	C	T	2032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.512;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=1.671;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-14.018;QD=5.88;ReadPosRankSum=-2.244;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:273,73:0.21:346
chr14	107035207	rs77785266	A	G	6136.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:88,253:0.74:341
chr14	107035212	.	G	A	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.407;ClippingRankSum=0.000;DP=319;ExcessHet=3.0103;FS=1.828;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-14.671;QD=5.97;ReadPosRankSum=-2.521;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:255,63:0.20:318
chr14	107048944	rs35850880	A	T	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=40.93;MQRankSum=0.527;QD=5.53;ReadPosRankSum=0.480;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:105,38:0.27:143
chr14	107078567	rs2516904	T	C	17259.77	.	AC=2;AF=1.00;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	1/1:0,626:1.00:626
chr14	107078790	rs1858692	C	T	17277.77	.	AC=2;AF=1.00;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr14	107082871	rs144729059	A	ATGC	3020.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr14	107082879	rs59681319	C	CG	2932.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.99;QD=48.08;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr14	107082880	.	T	G	464	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=1;HapScore=2;MGOF=9;MMLQ=23;MQ=56.33;NF=13;NR=15;PP=464;QD=17.813257591;SC=GATGAGAAGCTTGATATATAT;SbPval=0.59;Source=Platypus;TC=42;TCF=20;TCR=22;TR=28;WE=107082905;WS=107082861;set=Platypus	GT:AD:AF:DP	1/1:14,28:0.67:42
chr14	107082881	rs59072447	T	TA,TTAG	2887.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=60;set=Intersection	GT:AF:DP	1/1:1.00:60
chr14	107082882	rs61261254	G	GA	2752.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.88;QD=46.66;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr14	107082889	rs4043174	A	ATTT	2597.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr14	107082897	rs2337902	T	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr14	107113846	rs201523378	A	G	9101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=998;ExcessHet=3.0103;FS=2.016;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-2.266;QD=9.18;ReadPosRankSum=-3.645;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:732,260:0.26:992
chr14	107113855	rs111637096	A	G	9554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=1054;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-3.292;QD=9.12;ReadPosRankSum=0.432;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:765,283:0.27:1048
chr14	107113858	rs111853090	A	G	9770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.216;ClippingRankSum=0.000;DB;DP=1062;ExcessHet=3.0103;FS=0.580;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-3.223;QD=9.25;ReadPosRankSum=1.500;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:762,294:0.28:1056
chr14	107113968	rs113324720	C	A	5337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=1018;ExcessHet=3.0103;FS=7.982;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-7.608;QD=5.27;ReadPosRankSum=2.142;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:718,295:0.29:1013
chr14	107114009	rs11846079	T	C	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.480;ClippingRankSum=0.000;DB;DP=1155;ExcessHet=3.0103;FS=12.567;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-15.599;QD=2.08;ReadPosRankSum=-0.846;SOR=1.466;set=HC	GT:AD:AF:DP	0/1:954,200:0.17:1154
chr14	107114045	rs200504122	C	T	1117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.658;ClippingRankSum=0.000;DB;DP=1373;ExcessHet=3.0103;FS=13.892;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-24.699;QD=0.81;ReadPosRankSum=-0.827;SOR=2.185;set=HC	GT:AD:AF:DP	0/1:1244,128:0.09:1372
chr14	107114055	rs199709247	C	A	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.558;ClippingRankSum=0.000;DB;DP=1430;ExcessHet=3.0103;FS=12.934;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-27.502;QD=0.41;ReadPosRankSum=0.654;SOR=2.550;set=HC	GT:AD:AF:DP	0/1:1320,109:0.08:1429
chr14	107114249	.	A	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.347;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-15.208;QD=0.70;ReadPosRankSum=4.194;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:271,25:0.08:296
chr14	107114252	rs201363461	G	C	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.862;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=-14.671;QD=0.88;ReadPosRankSum=4.273;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:251,25:0.09:276
chr14	107114254	.	G	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-14.422;QD=1.00;ReadPosRankSum=4.608;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:242,25:0.09:267
chr14	107131037	rs199906835	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.666;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=10.527;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-16.554;QD=1.76;ReadPosRankSum=-1.643;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:340,41:0.11:381
chr14	107131072	rs111633690	G	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.141;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-12.522;QD=0.29;ReadPosRankSum=3.972;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:543,45:0.08:588
chr14	107170005	rs1141720	T	C	16079.77	.	AC=1;AF=0.500;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	0/1:245,728:0.75:973
chr14	107170398	rs4448834	C	T	3243.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:68,143:0.68:211
chr14	107178795	rs10144331	A	G	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr14	107178832	rs10144402	A	G	8583.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr14	107178941	rs10133751	T	A	2388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.883;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:438,154:0.26:592
chr14	107178965	rs2073669	A	C	2160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=609;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-0.591;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:452,154:0.25:606
chr14	107179017	rs61732209	A	G	1632.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.830;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:344,115:0.25:459
chr14	107179106	rs10144703	C	T	1361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.246;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:259,85:0.25:344
chr14	107198866	rs1987970	T	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr14	107259782	rs201707042	A	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-12.313;QD=3.15;ReadPosRankSum=0.208;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:229,36:0.14:265
chr14	107259787	rs199655081	A	C	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=1.390;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-11.710;QD=3.30;ReadPosRankSum=0.779;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:218,38:0.15:256
chr14	107259830	rs78693499	A	G	797.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.546;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=5.031;MLEAC=1;MLEAF=0.500;MQ=58.67;MQRankSum=-8.712;QD=4.89;ReadPosRankSum=3.089;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:129,34:0.21:163
chr14	107259850	rs78504059	G	A	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.361;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=9.627;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-7.930;QD=6.48;ReadPosRankSum=1.323;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr14	107259865	rs76113443	A	C	747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=10.263;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-7.026;QD=7.63;ReadPosRankSum=-0.583;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:74,24:0.24:98
chr14	107259887	rs72692489	G	A	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-5.241;QD=4.90;ReadPosRankSum=-2.952;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr14	107282785	.	TG	CT	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.844;ClippingRankSum=0.000;DP=445;ExcessHet=3.0103;FS=27.820;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-18.911;QD=1.90;ReadPosRankSum=-2.711;SOR=3.288;set=HC	GT:AD:AF:DP	0/1:395,47:0.11:442
chr14	107282791	.	A	C	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.764;ClippingRankSum=0.000;DP=447;ExcessHet=3.0103;FS=30.395;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-19.131;QD=2.31;ReadPosRankSum=-2.513;SOR=3.513;set=HC	GT:AD:AF:DP	0/1:392,52:0.12:444
chr14	107282809	rs201928713	T	C	1400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.349;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=27.431;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-20.054;QD=2.95;ReadPosRankSum=1.229;SOR=3.238;set=HC	GT:AD:AF:DP	0/1:414,61:0.13:475
chr14	107282813	rs199801132	CA	AG	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=29.956;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-20.052;QD=2.95;ReadPosRankSum=1.433;SOR=3.119;set=HC	GT:AD:AF:DP	0/1:408,64:0.14:472
chr14	107282836	rs201902530	T	A	3539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=18.675;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-16.215;QD=6.90;ReadPosRankSum=-0.923;SOR=1.907;set=HC	GT:AD:AF:DP	0/1:399,114:0.22:513
chr14	107282846	rs200859769	G	A	5200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=8.472;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-15.173;QD=9.46;ReadPosRankSum=-1.652;SOR=1.335;set=HC	GT:AD:AF:DP	0/1:402,148:0.27:550
chr14	107282852	rs201336503	T	C	6050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=6.828;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-14.846;QD=10.67;ReadPosRankSum=-1.708;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:398,169:0.30:567
chr14	107282859	rs201095197	G	A	6663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=5.293;MLEAC=1;MLEAF=0.500;MQ=58.37;MQRankSum=-13.428;QD=11.28;ReadPosRankSum=-2.616;SOR=1.081;set=HC	GT:AD:AF:DP	0/1:388,203:0.34:591
chr14	107282872	rs61741319	T	A	6074.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:386,273:0.41:659
chr14	107282909	rs202202987	T	C	6322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.974;ClippingRankSum=0.000;DB;DP=786;ExcessHet=3.0103;FS=1.750;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-15.038;QD=8.05;ReadPosRankSum=4.810;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:436,349:0.44:785
chr14	107282926	rs149038822	A	T	13057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.161;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=4.098;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-15.681;QD=15.60;ReadPosRankSum=7.691;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:483,354:0.42:837
chr14	107282935	rs201762529	A	T	12793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.961;ClippingRankSum=0.000;DB;DP=852;ExcessHet=3.0103;FS=4.144;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-15.623;QD=15.03;ReadPosRankSum=8.866;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:507,344:0.40:851
chr14	107282973	rs200848671	G	C	4369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-11.369;QD=5.10;ReadPosRankSum=-8.593;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:586,270:0.32:856
chr14	107282988	.	C	G	6635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=771;ExcessHet=3.0103;FS=4.518;MLEAC=1;MLEAF=0.500;MQ=58.21;MQRankSum=-16.364;QD=8.62;ReadPosRankSum=-10.515;SOR=1.037;set=HC	GT:AD:AF:DP	0/1:540,230:0.30:770
chr14	107282994	.	G	C	6087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.081;ClippingRankSum=0.000;DP=710;ExcessHet=3.0103;FS=17.977;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-18.546;QD=8.59;ReadPosRankSum=-8.076;SOR=1.874;set=HC	GT:AD:AF:DP	0/1:548,161:0.23:709
chr14	107282996	.	G	A	5041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.753;ClippingRankSum=0.000;DP=695;ExcessHet=3.0103;FS=21.191;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-18.462;QD=7.26;ReadPosRankSum=-7.908;SOR=2.079;set=HC	GT:AD:AF:DP	0/1:546,148:0.21:694
chr14	107283002	.	AC	GG	4089.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.896;ClippingRankSum=0.000;DP=647;ExcessHet=3.0103;FS=20.741;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-19.528;QD=6.32;ReadPosRankSum=-8.823;SOR=2.146;set=HC	GT:AD:AF:DP	0/1:527,120:0.19:647
chr14	107283008	rs113134619	A	T	2983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.095;ClippingRankSum=0.000;DB;DP=622;ExcessHet=3.0103;FS=15.297;MLEAC=1;MLEAF=0.500;MQ=58.43;MQRankSum=-21.442;QD=4.80;ReadPosRankSum=-9.088;SOR=1.985;set=HC	GT:AD:AF:DP	0/1:524,98:0.16:622
chr15	20170011	rs147526485	G	A	25627.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	1/1:1,951:1.00:952
chr15	20170150	rs10431885	C	T	10625.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:2,382:0.99:384
chr15	20229964	rs371237168	C	T	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.79;QD=30.99;SOR=7.168;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	20279507	rs200188568	G	A	1531.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:185,91:0.33:276
chr15	20433733	rs3926481	A	C	1197.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr15	20433755	rs4114043	G	A	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	20434184	.	A	G	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=4.27;ReadPosRankSum=0.269;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:393,143:0.27:536
chr15	20444637	rs200452405	G	A	2805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833;ClippingRankSum=0.000;DB;DP=1758;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=1.266;QD=1.61;ReadPosRankSum=-0.091;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:1454,290:0.17:1744
chr15	20444794	rs2722084	C	T	20503.77	.	AC=1;AF=0.500;AN=2;DB;DP=2447;set=Intersection	GT:AD:AF:DP	0/1:1432,1011:0.41:2443
chr15	20445987	rs4931804	C	T	9328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=1603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.772;QD=5.84;ReadPosRankSum=0.638;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:1053,544:0.34:1597
chr15	20446043	rs1823751	T	A	27290.77	.	AC=1;AF=0.500;AN=2;DB;DP=2078;set=Intersection	GT:AD:AF:DP	0/1:1028,1043:0.50:2071
chr15	20446047	rs28541280	T	G	2516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=2044;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-4.091;QD=1.23;ReadPosRankSum=-0.058;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:1706,333:0.16:2039
chr15	20447987	rs8024775	A	G	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:73,70:0.49:143
chr15	20448027	rs12148787	C	T	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=15.337;MLEAC=1;MLEAF=0.500;MQ=49.47;MQRankSum=-5.594;QD=2.06;ReadPosRankSum=-2.651;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:245,48:0.16:293
chr15	20448056	rs8024950	A	G	6235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.569;ClippingRankSum=0.000;DB;DP=517;ExcessHet=3.0103;FS=23.050;MLEAC=1;MLEAF=0.500;MQ=49.40;MQRankSum=-16.642;QD=12.11;ReadPosRankSum=-6.468;SOR=1.918;set=HC	GT:AD:AF:DP	0/1:227,288:0.56:515
chr15	20448077	rs3963874	T	A,C	21489.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=884;set=Intersection	GT:AF:DP	1/2:0.53,0.47:880
chr15	20450242	rs2444187	G	C	12889.77	.	AC=1;AF=0.500;AN=2;DB;DP=2488;set=Intersection	GT:AD:AF:DP	0/1:1712,769:0.31:2481
chr15	20450376	rs59373601	G	A	8205.77	.	AC=1;AF=0.500;AN=2;DB;DP=1531;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:1047,476:0.31:1523
chr15	20453825	rs7167849	A	G	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:141,73:0.34:214
chr15	20453896	rs2601517	G	C	9720.77	.	AC=1;AF=0.500;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	0/1:91,406:0.82:497
chr15	20453913	rs2601516	C	T	5401.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:321,271:0.46:592
chr15	20453932	rs60565633	T	G	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.414;ClippingRankSum=0.000;DB;DP=677;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-2.501;QD=3.84;ReadPosRankSum=0.822;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:497,180:0.27:677
chr15	20454100	rs12324192	TT	AA	3253.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;JOINED;set=Intersection	GT:AD:AF:DP	0/1:203,93:0.31:296
chr15	20456600	rs2924241	G	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=-0.207;QD=2.52;ReadPosRankSum=0.470;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:285,74:0.21:359
chr15	20456740	rs2954579	A	G	9100.77	.	AC=1;AF=0.500;AN=2;DB;DP=650;set=Intersection	GT:AD:AF:DP	0/1:226,421:0.65:647
chr15	20456821	rs3866620	G	A	2487.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:256,129:0.34:385
chr15	20457155	rs11856094	A	C	6302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.835;ClippingRankSum=0.000;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-18.430;QD=8.99;ReadPosRankSum=1.480;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:516,185:0.26:701
chr15	20457157	rs11854770	C	T	6302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.419;ClippingRankSum=0.000;DB;DP=716;ExcessHet=3.0103;FS=0.636;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-18.473;QD=8.83;ReadPosRankSum=0.749;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:522,192:0.27:714
chr15	20457244	rs2060872	G	C	8377.77	.	AC=1;AF=0.500;AN=2;DB;DP=1456;set=Intersection	GT:AD:AF:DP	0/1:996,458:0.31:1454
chr15	20457291	rs6599891	T	C	40370.77	.	AC=1;AF=0.500;AN=2;DB;DP=2150;set=Intersection	GT:AD:AF:DP	0/1:425,1722:0.80:2147
chr15	20462450	rs2343219	C	T	2004.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:93,94:0.50:187
chr15	20462507	rs2343218	C	T	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:95,110:0.54:205
chr15	20462603	rs2880572	G	T	6404.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:323,294:0.48:617
chr15	20462613	rs28374902	G	C	3503.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:476,206:0.30:682
chr15	20462690	rs6422224	T	G	20559.77	.	AC=1;AF=0.500;AN=2;DB;DP=1115;set=Intersection	GT:AD:AF:DP	0/1:242,869:0.78:1111
chr15	20462720	rs28522508	G	A	4171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=983;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-1.706;QD=4.26;ReadPosRankSum=0.221;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:711,268:0.27:979
chr15	20462805	rs370467528	TA	T	294.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.517;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-1.770;QD=1.33;ReadPosRankSum=0.911;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:170,52:0.23:222
chr15	20462806	rs7179860	A	T	50.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=2.542;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-0.742;QD=0.23;ReadPosRankSum=-0.387;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:184,38:0.17:222
chr15	20462810	rs28679605	T	A	1149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=1.059;QD=4.98;ReadPosRankSum=2.479;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:169,62:0.27:231
chr15	20464736	rs112424577	C	CA	2006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.673;ClippingRankSum=0.000;DB;DP=793;ExcessHet=3.0103;FS=1.862;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=5.148;QD=3.09;ReadPosRankSum=-1.249;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:439,211:0.32:650
chr15	20464860	rs7177447	G	T	12614.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:116,538:0.82:654
chr15	20465103	rs6599901	A	C	4085.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:234,206:0.47:440
chr15	20466516	rs4983836	C	T	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.65;QD=27.65;SOR=1.577;set=HC	GT:AD:AF:DP	1/1:0,433:1.00:433
chr15	20466604	rs4983834	A	G	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.98;QD=38.18;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	20467100	rs4983661	A	G	4895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518;ClippingRankSum=0.000;DB;DP=1020;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-2.725;QD=4.83;ReadPosRankSum=-2.558;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:702,312:0.31:1014
chr15	20467994	rs2601503	C	T	771.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.327;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:253,60:0.19:313
chr15	20481882	rs11248739	G	T	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=3.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.829;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:371,67:0.15:438
chr15	20482094	rs1869199	C	T	7148.77	.	AC=1;AF=0.500;AN=2;DB;DP=1263;set=Intersection	GT:AD:AF:DP	0/1:854,408:0.32:1262
chr15	20588563	rs2291972	A	G	1123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=-11.475;QD=3.52;ReadPosRankSum=1.210;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:247,72:0.23:319
chr15	20588705	rs4931826	C	A	3558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DB;DP=1132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.628;QD=3.15;ReadPosRankSum=0.808;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:863,266:0.24:1129
chr15	20874897	rs7497658	A	G	37218.77	.	AC=1;AF=0.500;AN=2;DB;DP=2553;set=Intersection	GT:AD:AF:DP	0/1:795,1750:0.69:2545
chr15	20875152	.	C	A	299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.062;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=3.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=0.339;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:78,23:0.23:101
chr15	20876423	rs10902996	A	G	13546.77	.	AC=1;AF=0.500;AN=2;DB;DP=1094;set=Intersection	GT:AD:AF:DP	0/1:472,620:0.57:1092
chr15	20876515	rs6422240	A	G	26431.77	.	AC=1;AF=0.500;AN=2;DB;DP=1860;set=Intersection	GT:AD:AF:DP	0/1:637,1216:0.66:1853
chr15	21145503	rs74912473	G	T	896.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr15	21145795	rs149393314	C	T	5721.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:457,290:0.39:747
chr15	21236521	rs369925461	C	G	114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.10;MQRankSum=-0.431;QD=12.75;ReadPosRankSum=-0.921;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr15	22156928	rs150801989	G	C	8906.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.476;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=-0.191;QD=25.82;ReadPosRankSum=-0.711;SOR=0.280;set=HC	GT:AD:AF:DP	1/1:1,344:1.00:345
chr15	22318824	rs35131467	AC	A	6159.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	22318963	rs1429506	A	T	29716.77	.	AC=2;AF=1.00;AN=2;DB;DP=1124;set=Intersection	GT:AD:AF:DP	1/1:0,1123:1.00:1123
chr15	22319380	rs143307154	C	A	3260.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:378,164:0.30:542
chr15	22319483	rs995427	G	A	40262.77	.	AC=2;AF=1.00;AN=2;DB;DP=1506;set=Intersection	GT:AD:AF:DP	1/1:0,1500:1.00:1500
chr15	22319497	rs1366875	G	C	22655.77	.	AC=1;AF=0.500;AN=2;DB;DP=1563;set=Intersection	GT:AD:AF:DP	0/1:535,1021:0.66:1556
chr15	22332751	rs930109	T	C	36115.77	.	AC=2;AF=1.00;AN=2;DB;DP=1326;set=Intersection	GT:AD:AF:DP	1/1:0,1320:1.00:1320
chr15	22344871	rs28571003	A	G	49156.77	.	AC=2;AF=1.00;AN=2;DB;DP=1143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.88;QD=43.23;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,1137:1.00:1137
chr15	22344879	rs1366870	C	G	46959.77	.	AC=2;AF=1.00;AN=2;DB;DP=1053;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.35;QD=44.81;SOR=0.893;set=HC	GT:AD:AF:DP	1/1:0,1048:1.00:1048
chr15	22344951	rs1366871	T	C	9533.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.68;QD=31.36;SOR=3.083;set=HC	GT:AD:AF:DP	1/1:0,304:1.00:304
chr15	22345038	rs1429471	T	C	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.60;QD=32.26;SOR=1.409;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	22345134	rs13380116	C	G	16379.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.43;QD=25.43;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,644:1.00:644
chr15	22368862	rs1835183	G	A	80802.77	.	AC=2;AF=1.00;AN=2;DB;DP=2899;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:2,2887:1.00:2889
chr15	22368905	rs1835182	G	A	75288.77	.	AC=2;AF=1.00;AN=2;DB;DP=3137;set=Intersection	GT:AD:AF:DP	1/1:3,3019:1.00:3022
chr15	22369248	rs491208	T	C	47073.77	.	AC=2;AF=1.00;AN=2;DB;DP=1674;set=Intersection	GT:AD:AF:DP	1/1:0,1673:1.00:1673
chr15	22369290	rs12593418	A	G	27524.77	.	AC=1;AF=0.500;AN=2;DB;DP=1926;set=Intersection	GT:AD:AF:DP	0/1:653,1272:0.66:1925
chr15	22369426	rs4087943	G	A	47986.77	.	AC=2;AF=1.00;AN=2;DB;DP=1809;set=Intersection	GT:AD:AF:DP	1/1:0,1803:1.00:1803
chr15	22382739	rs2671839	A	G	13217.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr15	22383066	rs559754	A	G	20507.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,722:1.00:722
chr15	22383189	rs1820851	G	A	26937.77	.	AC=2;AF=1.00;AN=2;DB;DP=1010;set=Intersection	GT:AD:AF:DP	1/1:1,1003:1.00:1004
chr15	22383482	rs3841636	GA	G	9515.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:2,266:0.99:268
chr15	22413700	rs267612	A	G	8199.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=2.628;MLEAC=2;MLEAF=1.000;MQ=44.19;MQRankSum=-2.490;QD=31.78;ReadPosRankSum=-1.470;SOR=1.666;set=HC	GT:AD:AF:DP	1/1:2,256:0.99:258
chr15	22413825	rs267613	C	T	34497.77	.	AC=2;AF=1.00;AN=2;DB;DP=1329;set=Intersection	GT:AD:AF:DP	1/1:16,1309:0.99:1325
chr15	22414391	rs200623814	G	A	2722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.853;ClippingRankSum=0.000;DB;DP=437;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.064;QD=6.33;ReadPosRankSum=0.106;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:295,135:0.31:430
chr15	22414393	rs200221521	C	CAA,CAAA	9301.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.441;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.113;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.84;MQRankSum=-0.441;QD=29.53;ReadPosRankSum=1.543;SOR=1.014;set=HC	GT:AD:AF:DP	1/2:16,201,98:0.64,0.31:315
chr15	22482858	rs1807224	A	G	13142.77	.	AC=1;AF=0.500;AN=2;DB;DP=2361;set=Intersection	GT:AD:AF:DP	0/1:1574,774:0.33:2348
chr15	22483277	rs753259	A	G	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:148,88:0.37:236
chr15	22489900	rs113115466	T	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-2.323;QD=1.06;ReadPosRankSum=-1.406;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:207,38:0.16:245
chr15	22489921	rs76846225	G	A	226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=0.000;QD=0.83;ReadPosRankSum=1.389;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:230,43:0.16:273
chr15	22489958	rs111826301	C	T	1252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.770;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-0.797;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:209,50:0.19:259
chr15	22489966	rs72687799	A	C	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=4.882;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.623;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:200,46:0.19:246
chr15	22489988	rs72687801	G	A	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.883;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=3.517;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=1.18;ReadPosRankSum=0.438;SOR=0.431;set=HC	GT:AD:AF:DP	0/1:169,33:0.16:202
chr15	22490019	rs112521162	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.840;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.870;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-1.329;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:105,25:0.19:130
chr15	22490035	rs72687802	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=-0.466;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:79,19:0.19:98
chr15	22926229	rs2289824	G	A	1875.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	22926307	rs7403459	A	G	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	22929906	rs2305093	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	22940866	rs45464395	C	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	22945314	rs8029108	C	T	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	22955013	rs2289816	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	22955307	rs3217548	AC	A	316.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	22962359	rs72698053	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	22963733	rs72698056	C	T	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,60:0.97:62
chr15	22969232	rs7170637	G	A	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	22999940	rs11307802	TG	T	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	23000272	rs999842	A	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	23006215	rs78803812	CCTTT	C	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	23021113	rs7170784	G	A	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	23049369	rs12592629	G	A	957.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	23052632	rs11263683	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.65;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	23059394	rs1991922	C	T	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	23131745	rs7181884	G	A	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.05;QD=26.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	23138992	rs202076313	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.16;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	23181922	rs1994761	T	C	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.632;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=4.884;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=0.210;QD=3.78;ReadPosRankSum=1.001;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:90,36:0.29:126
chr15	23182537	rs189988840	C	T	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.30;QD=24.39;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	23200698	rs58552405	A	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.89;QD=27.09;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	23200800	rs200557911	TA	T	575.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.15;QD=19.85;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	23685004	rs34879341	G	GCAT	6970.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.64;QD=44.40;SOR=0.887;set=HC	GT:AD:AF:DP	1/1:1,156:0.99:157
chr15	23685343	rs74203443	T	C	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.91;QD=23.05;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	23685475	.	C	T	1680	.	AC=1;AF=0.500;AN=2;BRF=0.68;FR=0.5000;HP=1;HapScore=2;MGOF=77;MMLQ=26;MQ=48.3;NF=65;NR=18;PP=1680;QD=20.6598941271;SC=TCTCCTGCTCCTGCATCTTCT;SbPval=0.63;Source=Platypus;TC=167;TCF=128;TCR=39;TR=83;WE=23685483;WS=23685465;set=Platypus	GT:AD:AF:DP	0/1:84,83:0.50:167
chr15	23685517	rs372380699	C	T	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:252,149:0.37:401
chr15	23685541	rs375981990	CT	C	18027.73	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr15	23685583	rs368496365	T	C	6112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.087;ClippingRankSum=0.000;DB;DP=493;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-1.839;QD=12.40;ReadPosRankSum=-5.387;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:307,186:0.38:493
chr15	23685604	.	TC	T	5586.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.739;ClippingRankSum=0.000;DP=428;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-1.611;QD=13.08;ReadPosRankSum=-10.087;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:273,154:0.36:427
chr15	23685606	.	TCTTCCTGCTCCCACATCTTCTCCTCCTGCTCCCGCATCTTC	T	2735.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.952;ClippingRankSum=0.000;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.12;MQRankSum=-2.134;QD=6.18;ReadPosRankSum=-9.852;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:300,143:0.32:443
chr15	23685639	rs374969803	C	T	3949.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:145,184:0.56:329
chr15	23685895	rs111853398	C	T	4426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-8.558;QD=8.73;ReadPosRankSum=1.243;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:279,228:0.45:507
chr15	23685922	.	C	CCCGCATCTTCTCCTCCTGCTT	3596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.555;ClippingRankSum=0.000;DP=558;ExcessHet=3.0103;FS=1.133;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-6.875;QD=7.77;ReadPosRankSum=4.267;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:281,182:0.39:463
chr15	23686010	.	T	TCTC	5809.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.759;ClippingRankSum=0.000;DP=544;ExcessHet=3.0103;FS=7.578;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-8.541;QD=11.71;ReadPosRankSum=3.083;SOR=1.185;set=HC	GT:AD:AF:DP	0/1:331,165:0.33:496
chr15	23686019	.	G	C	5473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.074;ClippingRankSum=0.000;DP=507;ExcessHet=3.0103;FS=7.852;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-8.964;QD=10.93;ReadPosRankSum=0.600;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:345,156:0.31:501
chr15	23686031	rs75983100	T	C	4998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=4.710;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-10.212;QD=10.16;ReadPosRankSum=-3.597;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:356,136:0.28:492
chr15	23686045	.	A	ATCTTCTCCTCCTGGCCCCACATCT	3575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=8.330;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-10.354;QD=7.58;ReadPosRankSum=-5.356;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:366,106:0.22:472
chr15	23686062	rs202194865	T	C	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.87;MQRankSum=-19.220;QD=1.08;ReadPosRankSum=-3.588;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:361,35:0.09:396
chr15	23686067	.	TCTC	T	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-19.775;QD=0.61;ReadPosRankSum=-2.176;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:372,34:0.08:406
chr15	23686113	.	C	CTGCTCTTGCATCTTCTCG	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.11;MQRankSum=-19.124;QD=0.09;ReadPosRankSum=3.800;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:379,29:0.07:408
chr15	23686598	rs35708006	T	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	23686673	rs59122400	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	23686914	rs57504140	T	A	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.22;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	23686924	rs58446506	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	23687812	rs2344891	T	G	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=35.11;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	23687818	rs72495057	CT	C	418.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.251;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=6.358;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=0.492;QD=13.96;ReadPosRankSum=-1.242;SOR=1.847;set=HC	GT:AD:AF:DP	1/1:3,27:0.90:30
chr15	23688944	rs4778531	A	G	1753.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	23689510	rs12902150	C	G	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	23889033	rs9785	G	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	23889739	rs2233070	G	T	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	23891503	rs2233063	C	G	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	23892525	.	G	A	1332.77	.	AC=2;AF=1.00;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	24921771	rs1563102	G	C	6031.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	25219512	rs705	T	C	3582.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	25307562	rs7402542	A	G	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	25310440	rs6576402	A	G	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	25321029	rs4906699	C	T	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	25324141	rs4344720	C	T	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	25328715	rs3803326	T	C	2132.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	25330550	rs3803328	T	A	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	25415693	rs2739837	T	C	264.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	25415759	rs2714734	G	A	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	25415809	rs2739838	C	T	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	25415825	rs1883009	C	T	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.69;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	25514778	rs117051492	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	25584556	rs17115485	A	G	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	25616729	rs147145506	C	T	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	25620975	rs71418040	TATC	T	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	25650695	rs35086186	C	CA	395.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr15	25652101	rs8032479	C	G	237.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	25937004	rs2066705	C	T	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	25953068	rs2291355	G	A	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	25961964	rs10873607	A	G	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	25963599	rs8024374	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	25967085	rs1564828	T	C	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	25981190	rs7173593	A	G	1692.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	25981367	rs7177724	C	T	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	26026139	rs8038726	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	26260450	rs12440137	C	T	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	26260477	rs12437822	T	C	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.34;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	26806064	rs3751582	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	26887814	rs754186	A	G	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=2.534;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	26887879	rs754185	T	C	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	27018187	.	TGCC	T	593.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.41;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	27018797	rs20318	G	A	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	27018937	rs20317	G	C	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	27019040	rs4906901	C	A	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	27128174	rs79895435	A	G	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	27128461	rs140680	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	27184435	rs12910925	C	T	5733.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr15	27184482	rs34560927	C	T	4817.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	27184517	rs17647384	G	A	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	27188353	rs140684	C	A	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	27188459	rs140685	C	T	3167.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	27772676	rs140679	C	T	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	27772892	rs2303879	G	A	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	28090296	.	TTTGA	T	2233.73	.	AC=2;AF=1.00;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	28096453	rs8025804	A	G	225.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	28096538	rs1800419	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	28116173	rs12594397	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	28116275	rs7175046	G	C	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	28171147	rs2594928	T	C	310.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	28195534	rs11632387	C	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	28196821	rs7173419	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	28200408	rs7170989	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	28211758	rs4778218	A	G	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	28211921	rs1800411	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	28228644	rs12910433	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	28230097	rs1900758	C	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	28231793	rs10852218	T	C	2983.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	28235773	rs1800404	C	T	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	28356859	rs1129038	C	T	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	28357230	rs4778245	T	C	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	28359744	rs7495441	G	A	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	28360081	rs7497014	T	C	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	28360888	rs5811542	C	CT	496.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	28361764	rs4778247	C	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	28362459	rs7495875	G	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	28375872	rs6416603	A	G	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	28377196	rs10627923	C	CCT	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	28377772	rs8025035	C	T	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	28378122	rs4778141	T	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	28386626	rs11636232	C	T	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	28388213	rs369443373	TA	T	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=1.100;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	28414665	rs7494786	T	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	28419526	rs372420106	A	G	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.838;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.61;MQRankSum=-2.467;QD=3.23;ReadPosRankSum=-1.960;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr15	28419566	rs201182375	T	C	345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.144;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=12.239;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-1.946;QD=8.43;ReadPosRankSum=-2.450;SOR=0.278;set=HC	GT:AD:AF:DP	0/1:22,19:0.46:41
chr15	28419619	rs141441362	C	T	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-2.997;QD=6.40;ReadPosRankSum=2.896;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:56,34:0.38:90
chr15	28419695	rs149592795	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr15	28419746	rs139335991	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr15	28419774	.	C	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.03;MQRankSum=0.208;QD=5.94;ReadPosRankSum=-2.882;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:17,5:0.23:22
chr15	28419779	.	A	G	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.68;MQRankSum=0.392;QD=6.23;ReadPosRankSum=-3.281;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr15	28441817	rs2525936	G	T	311.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	28502279	rs11631797	A	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	28632736	.	C	T	173.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.34;QD=24.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	29008641	rs372586219	GCCCCTCCATGGATCACCGGCA	G	1608.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	29008851	rs145357312	C	T	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.78;QD=30.64;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	29009050	rs112804410	A	AC	8765.73	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr15	29009311	rs142374134	A	G	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	29043336	rs11630550	C	T	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	29043486	rs11630596	C	T	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	29043511	rs1877706	T	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;MQ=53.73;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	29052021	rs4036877	A	T	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	29385149	rs4779760	A	G	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	29385204	rs4779761	A	G	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	29386593	rs8037972	G	A	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	29386628	.	G	A	529.77	.	AC=2;AF=1.00;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	29415560	rs3751562	G	A	8105.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr15	29415698	rs3751563	A	G	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	29417099	rs12438521	G	C	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	29418520	rs2256273	C	T	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	29418573	rs2672680	AT	GC	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	29418745	rs968476	G	T	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	29428556	rs8023368	C	G	467.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	29444130	rs59230279	GC	G	974.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	29862654	rs111717681	C	G	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	30008856	rs7166878	C	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	30010328	rs72143374	TA	T	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.838;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=6.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=0.155;SOR=1.506;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr15	30053844	rs17671751	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	30336850	rs7173045	G	T	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	30337377	rs10775120	G	C	3707.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	30663407	rs149768281	C	T	64.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=21.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	30700113	rs77438869	G	A	131.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.96;QD=26.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	30700159	rs62016504	A	G	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.52;QD=29.18;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	30700168	.	C	CTTG	41.70	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.07;QD=20.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	31048067	rs116457401	T	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.12;QD=39.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	31048088	rs61998400	T	C	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.70;QD=38.06;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	31048241	rs11633095	A	G	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.13;QD=24.49;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	31060115	rs4779494	T	C	3051.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.57;QD=25.86;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	31210319	rs189512431	A	G	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.55;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	31220709	.	TTG	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.115;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=5.366;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.356;QD=7.37;ReadPosRankSum=1.849;SOR=1.370;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr15	31233220	rs2955792	C	T	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	31233352	rs3840035	GTGAC	G	2872.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	31234981	rs11293	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	31235005	rs3512	G	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	31235357	rs2293319	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	31238783	rs11637469	T	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	31244263	rs2955789	C	T	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	31245880	rs1404467	C	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	31246840	rs34294266	A	G	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	31258163	rs143774725	A	C	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	31283844	rs28564430	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	31329944	rs12911350	G	A	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	31330280	rs2288242	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	31330313	rs12913672	A	G	1834.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	31338500	rs12907509	T	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	31341773	rs10162957	C	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	31342498	rs17815780	A	T	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	31357138	rs919001	A	G	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.45;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	31359203	rs8039189	G	T	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	31359211	rs11354407	CA	C	2415.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	31359552	rs3784600	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	31362352	rs2241493	C	T	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	31515933	rs28718174	G	C	2973.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	31521505	rs3835087	CGG	C	1922.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	31523008	rs2304507	T	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.87;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	31619607	rs11537749	G	A	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	31776210	rs199744400	TGGC	T	956.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	31793930	rs7164569	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	32393486	rs201765366	C	CT,CTT	1297.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.697;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=0.161;SOR=0.455;set=HC	GT:AD:AF:DP	1/2:6,16,44:0.24,0.67:66
chr15	32393663	rs28650375	C	A	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	32926076	rs11632524	C	T	114.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	32984196	rs6494593	A	G	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	33023486	rs12915554	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	33190993	rs140128513	T	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	33191023	rs173224	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	33200804	rs10713398	CA	C	128.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.417;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.696;QD=6.79;ReadPosRankSum=-0.234;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:5,14:0.74:19
chr15	33200867	rs66965190	G	A	170.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	33218589	rs36016183	C	CTCT	311.75	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	33256251	rs11637012	T	C	61.28	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	33446258	rs28377066	G	A	5271.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	33446311	rs28507600	G	C	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	33795710	rs2572204	A	G	1811.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	33840414	rs1435100	A	G	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	33842222	rs1865496	C	G	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	33858935	rs11853872	G	A	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	33872143	rs8041153	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.70;SOR=1.094;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	33872438	rs8023510	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	33873656	rs748299	AC	GT	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	33873751	rs2077268	G	A	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	33873901	rs748298	C	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	33876449	rs10431811	G	A	819.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	33876517	rs2643364	A	G	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	33876543	rs624954	C	T	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	33893769	rs2437135	C	T	2753.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	33893828	rs3829479	C	G	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	33905410	rs2229116	A	G	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	33923237	rs28696769	C	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	33925364	rs2291732	G	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	33927764	rs1495280	C	T	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	33928500	rs2291734	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	33954652	rs4780144	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	33955262	rs66533161	GTGAC	G	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	33962559	rs11072596	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	33990250	rs1111611	G	A	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	33990294	rs1390161	G	A	259.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	34016274	rs6495228	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	34038511	rs3812937	A	G	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	34049615	rs2288604	A	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	34061142	rs3214581	C	CA	710.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	34064043	rs1429754	T	C	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	34064467	rs62012654	T	G	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr15	34103272	rs4780181	C	G	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	34111876	rs150186949	AAAATAAATAAATAAAT	A	3399.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	34113010	rs2288613	C	T	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	34113592	rs2288615	T	G	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	34115088	rs8032198	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	34117947	rs200179292	TC	T	180.82	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.14;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	34117954	rs72715190	A	G	223.81	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.30;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	34118994	rs4041449	C	CAG	2571.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	34129357	rs7182398	C	T	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	34135826	rs2303868	G	A	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	34136971	rs7181900	T	C	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	34137292	rs12899715	C	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	34140735	rs2278314	A	G	218.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	34146783	rs2303308	G	A	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	34146886	rs713201	T	C	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	34146922	rs713203	C	T	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	34151668	rs7180084	G	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	34152777	rs2303310	T	A	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	34156284	rs11072759	C	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	34156312	rs11072760	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	34380216	rs377063587	TA	T	158.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.067;QD=2.48;ReadPosRankSum=-1.130;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr15	34437863	rs4780222	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	34441102	rs6495551	C	T	177.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	34521253	rs7167503	A	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	34528948	rs4577050	G	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	34529488	rs35994446	G	GT	97.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.085;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.87;ReadPosRankSum=0.431;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	34537435	rs4371122	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	34543055	rs10851964	G	A	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	34543298	rs11382535	G	GA	357.73	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr15	34547757	rs11421665	G	GA	105.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	34640054	rs150911418	AAAAAAT	A	616.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	34640218	rs374230	C	T	11347.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr15	34640378	rs430083	T	C	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr15	34640959	rs371061	G	A	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	34643103	rs347796	A	G	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	34653914	rs35483472	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	34654339	rs10626628	T	TTCTC,TTCTCTC	5586.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.07;MQRankSum=0.000;QD=38.00;ReadPosRankSum=-0.524;SOR=0.493;set=HC	GT:AD:AF:DP	1/2:10,23,114:0.16,0.78:147
chr15	34655092	rs2339434	T	C	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	34656524	rs6495665	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	34657589	rs4984237	A	G	115.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	34673722	rs76522922	C	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.88;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	35045057	rs3743123	G	A	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	35045312	rs651724	T	A	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	35083508	rs201456215	TCACACACACACACACACA	TCA,T	1284.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=61;set=Intersection	GT:AF:DP	1/1:1.00:32
chr15	35149008	rs8035240	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	35149313	.	T	TA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=3.278;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=0.732;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chr15	35168056	rs2290321	C	T	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	35185812	rs6495722	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr15	35196492	rs12898639	C	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	35207397	rs2044920	C	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	35230924	rs12594085	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	35230934	rs10701045	A	ATAGT	997.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	35252767	rs11636350	G	A	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	35256624	rs9920529	C	G	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	35261649	rs7164169	A	G	7911.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr15	35261952	rs7164070	C	T	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	35834547	rs1020307	T	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.36;SOR=1.342;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	36218920	rs5811877	AT	A	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.90;QD=43.67;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	36218923	rs71808099	AATT	A	1247.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.90;QD=44.56;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	36218930	rs1532477	T	A	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.84;QD=43.34;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	36219168	rs5811879	CA	C	313.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.94;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	36937405	rs11073191	G	T	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.89;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	36937606	rs11073192	A	C	139.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	36946153	rs10220771	G	A	1531.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	36946303	rs3784678	C	G	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	36946441	rs10220785	C	T	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	36949952	rs6495863	T	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	36984409	rs3743338	T	C	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.39;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	36989469	rs2381887	G	A	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	37026600	rs5811935	A	AT	274.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.000;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:2,15:0.88:17
chr15	37026612	rs2078369	A	T	303.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.88;ReadPosRankSum=-0.775;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr15	37110637	rs1194621	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	37173379	rs16964235	T	C	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	37173945	rs4451907	A	G	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	37242440	rs11293336	GA	G	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=3.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.43;ReadPosRankSum=-0.863;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr15	38230565	rs59125264	TG	T	1331.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	38233301	rs1011273	T	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	38233869	rs2937991	T	C	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.053;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	38235551	.	C	T	3668.77	.	AC=2;AF=1.00;AN=2;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	38258772	rs2959336	A	C	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	38590722	rs8040553	T	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	38590771	rs8036280	A	G	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	38590854	rs8034630	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	38614525	rs7182445	G	A	1624.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	38616815	rs1879939	G	A	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	38616843	rs190367864	C	T	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	38617113	rs1879938	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	38617115	rs1879937	C	G	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	38631840	rs7163339	T	C	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	38631930	rs7180446	C	A	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	38632148	rs7181472	A	G	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	38641773	rs61670754	G	GTT	1446.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	38641774	.	A	T	436	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=3;MGOF=6;MMLQ=28;MQ=60.0;NF=5;NR=15;PP=436;QD=23.5385606274;SC=TAATTAATAGATAGGTAAAGT;SbPval=0.57;Source=Platypus;TC=20;TCF=5;TCR=15;TR=20;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	38641774	rs34352434	A	AAAT	1446.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.84;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	38641776	.	A	AAATTAGT	1014	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=3;MGOF=6;MMLQ=28;MQ=60.0;NF=0;NR=15;PP=1014;QD=74.2666666667;SC=ATTAATAGATAGGTAAAGTTT;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=15;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:1,15:0.94:16
chr15	38641777	.	G	A	452	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=3;MGOF=6;MMLQ=27;MQ=60.0;NF=5;NR=16;PP=452;QD=23.1795815499;SC=TTAATAGATAGGTAAAGTTTT;SbPval=0.54;Source=Platypus;TC=22;TCF=5;TCR=17;TR=21;WE=38641785;WS=38641764;set=Platypus	GT:AD:AF:DP	1/1:1,21:0.95:22
chr15	38641777	rs59928364	G	GTA	1512.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	38643574	rs3751526	T	C	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	38762701	rs7162389	A	G	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	38776330	rs61409403	T	G	82.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	38990803	rs12595568	T	G	403.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	40005793	.	G	GA	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.729;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:42,10:0.19:52
chr15	40030440	rs1906163	G	A	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40030457	rs34646792	GA	G	305.74	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr15	40031715	rs8033687	C	T	118.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	40056219	rs34937456	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.10;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	40056223	rs62004778	T	C	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	40062825	rs1565560	C	A	912.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.73;ReadPosRankSum=0.829;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr15	40062838	rs7179838	G	A	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	40062855	rs1565561	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	40062884	rs7180846	T	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	40094564	rs17717859	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	40226495	rs566792	T	C	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	40235552	.	CTT	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.97;ReadPosRankSum=0.913;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:5,5:0.50:10
chr15	40254155	rs510949	A	G	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40259504	rs522933	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.31;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	40259519	.	C	CTT	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.87;ReadPosRankSum=-0.044;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:9,9:0.50:18
chr15	40265799	rs2307105	A	G	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	40269126	rs112695691	T	TTTCC	2002.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.30;QD=42.61;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	40270214	rs7174071	A	G	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	40282625	rs4144472	T	C	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	40284523	rs7178419	C	T	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	40284802	rs11070241	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	40285120	rs11633992	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	40291140	rs2412457	C	T	133.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	40300092	rs2279581	T	C	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	40300214	rs2279580	G	C	3326.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	40313083	rs12916520	G	T	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	40314882	rs190548794	C	T	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	40322552	rs2250402	G	T	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	40324837	rs2291621	C	T	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	40328575	rs7535	G	C	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr15	40328665	rs8208	G	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	40329033	rs2291619	A	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	40329480	rs3215044	G	GAA	756.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.978;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=0.000;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:6,39:0.87:45
chr15	40330564	rs7321	C	T	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	40330629	rs8041057	C	T	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	40330693	rs937215	C	T	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	40384099	.	GA	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.19;ReadPosRankSum=-1.584;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr15	40453307	rs2277559	A	G	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	40457129	rs3214012	A	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	40477831	rs1801376	G	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	40488851	rs1047130	G	A	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.08;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	40491952	rs2172742	A	G	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	40494952	rs2412482	A	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.62;SOR=2.765;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	40494960	rs12898804	A	C	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.67;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	40500986	rs11630664	C	T	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40556685	rs7162809	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	40556713	rs12902461	T	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	40558744	rs748556	G	A	2915.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	40565055	rs2253603	G	A	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	40573675	rs12440450	G	T	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	40573716	rs4924446	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	40582128	.	AAGAGAGAG	A,AAG	626.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.291;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.94;ReadPosRankSum=0.227;SOR=0.892;set=HC	GT:AD:AF:DP	1/2:9,15,13:0.41,0.35:37
chr15	40582169	rs8036867	A	T	1032.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=4.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.789;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:30,50:0.62:80
chr15	40582169	.	AGTGT	TGTGT	1427	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000,1.0000;HP=2;HapScore=3;MGOF=16;MMLQ=23;MQ=58.29;NF=4,26;NR=11,20;PP=749,1427;QD=50.1333333333;SC=AGAGAGAGAGAGTGTGTGTGT;SbPval=0.64;Source=Platypus;TC=46;TCF=13;TCR=33;TR=15,46;WE=40582180;WS=40582159;set=Platypus	GT:AD:AF:DP	0/1:33,46:0.58:79
chr15	40582169	.	AGTGT	A	1427	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000,1.0000;HP=2;HapScore=3;MGOF=16;MMLQ=23;MQ=58.29;NF=4,26;NR=11,20;PP=749,1427;QD=50.1333333333;SC=AGAGAGAGAGAGTGTGTGTGT;SbPval=0.64;Source=Platypus;TC=46;TCF=13;TCR=33;TR=15,46;WE=40582180;WS=40582159;set=Platypus	GT:AD:AF:DP	0/1:31,15:0.33:46
chr15	40583093	rs2412506	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40583107	rs117658605	T	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	40583458	rs936209	A	G	2939.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	40583876	rs9972418	T	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	40584164	rs2290550	C	A	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	40589830	rs2305649	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	40590134	rs2229690	G	A	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	40590265	rs2305648	C	G	2427.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	40593939	rs2305647	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	40595414	rs1869902	G	C	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	40595627	rs1869901	G	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	40630073	rs78494549	G	A	1710.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	40632302	rs12440659	G	C	4247.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr15	40645347	rs11853293	T	C	234.73	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr15	40646520	rs71132169	CT	C	1916.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	40650435	rs139273189	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	40650455	.	A	ACCG	427.75	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:3,21:0.88:24
chr15	40655845	rs1898883	C	G	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr15	40655873	rs1898882	G	C	7930.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr15	40660192	rs8040755	C	T	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	40662773	rs3803358	C	T	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	40675155	rs7164132	C	A	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	40675329	rs7164321	A	G	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	40675443	rs7169404	G	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	40675493	rs7169262	C	T	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	40676574	rs143882095	CA	C	250.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40681854	rs78604110	C	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	40683702	rs11541642	A	G	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	40683780	rs2289332	G	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	40698197	rs373206450	GCCCCAAGGCCTCCTTCCTGCCTGGT	G	1368.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	40699940	rs2289331	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	40700006	rs3214685	G	GTT	431.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	40703114	rs8033938	A	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	40703339	rs8034416	C	T	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	40703609	rs4924466	A	G	989.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	40705105	rs2289330	A	G	648.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	40708422	rs11070270	A	G	2485.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	40711270	rs2075625	C	G	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	40712466	.	C	T	377.77	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40712737	rs11790	T	C	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	40716253	rs2304645	G	C	1347.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	40751555	rs3803357	C	A	6866.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	40820805	rs7164166	A	G	34.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	40824710	rs8029208	T	C	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	40827030	rs12916323	C	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	40856989	rs3803354	C	T	6286.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr15	40862191	rs141235042	G	GGTTTTGTTTTGTTTTGTTTT	1105.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	40898643	rs7177192	G	C	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	40900943	.	CAA	C	99.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.67;ReadPosRankSum=0.691;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	40903684	rs12911738	A	G	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	40907698	rs11427985	T	TG	516.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	40913840	rs2412541	G	T	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	40914177	rs11858113	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	40914772	rs11855334	C	T	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	40915045	rs8041534	T	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	40915190	rs8040502	A	G	1984.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	40915894	rs11070285	T	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr15	40921693	.	CTTTTTTTTTTTTT	C	100.14	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.38;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	40937727	rs6492959	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	40939448	rs8041095	G	A	158.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	40942715	rs34904135	GT	G	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.87;ReadPosRankSum=0.105;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	40944103	rs3092980	C	T	378.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	40947023	rs10444817	C	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	40949526	rs2412544	C	T	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	40998305	rs45592734	T	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	41029270	.	G	C	290.77	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	41030579	rs34355108	C	CA	517.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,24:0.96:25
chr15	41030865	rs2304582	C	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	41036448	rs4923884	G	A	2167.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	41047024	rs7169010	G	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	41063244	rs1866170	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	41065890	rs2289219	C	T	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	41071867	.	CA	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.759;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=-0.821;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr15	41099899	rs142730574	T	TGGGGC	1221.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	41101124	rs3743033	C	G	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	41101145	rs3743034	C	T	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	41104743	.	CAA	C	143	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	41104771	rs141515751	GAAAGAAAGAAAGAAAGAA	G	672.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=67.48;QD=44.85;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	41104817	rs35853942	A	G	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	41104874	rs17657877	G	C	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	41105658	rs3736286	G	A	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	41105926	rs690347	T	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	41109371	rs12148058	G	A	87.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	41146581	rs3736287	T	C	988.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	41148199	rs659232	C	T	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	41149161	rs690458	G	C	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr15	41165739	rs1814692	A	C	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	41193274	rs9806730	T	C	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	41193316	rs9806683	C	T	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	41224280	rs3212279	G	T	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	41245676	rs11557249	G	A	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	41246237	rs3033592	A	ATC	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	41247859	rs112036939	A	T	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	41308142	.	CAAA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;ClippingRankSum=0.000;DP=13;ExcessHet=3.0103;FS=2.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.767;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr15	41315591	rs72527311	A	AAT	1561.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	41339481	rs11070320	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	41339697	rs34153025	T	C	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	41346092	rs2899010	T	C	926.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	41476101	rs521088	T	C	274.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	41476209	rs522063	T	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	41476856	rs111604343	C	CTT	441.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	41476875	rs2467297	T	C	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	41483631	rs11371504	T	TA	1877.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	41483636	rs2412609	C	T	1979.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	41605653	rs8032846	G	C	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	41634774	rs78809244	G	A	267.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	41672441	rs11376196	A	AT	135.37	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:3,9:0.75:12
chr15	41766966	rs167581	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	41770639	rs113160783	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=-2.452;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr15	41797296	rs2278659	T	C	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	41797573	rs35233496	T	TG	2183.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	41805237	rs2305030	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	41815516	rs8027526	G	C	4111.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	41820200	rs2289741	C	T	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	41822025	rs2305031	C	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	41827243	rs7181115	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	41828459	rs3215915	CT	C	1923.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	41856543	rs11070339	A	G	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	41865488	rs2246444	C	T	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:2,117:0.98:119
chr15	41991315	rs2178004	A	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.51;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	41991391	rs11285992	CT	C	962.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=22.92;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	42005772	rs1918313	A	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	42021512	rs17677811	T	C	6854.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr15	42026764	rs1918314	C	T	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	42028354	rs2577960	C	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	42041712	rs2695163	G	A	2475.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	42046568	rs2695164	A	G	208.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	42059521	rs2605570	A	T	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	42103822	rs1197672	C	T	3974.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	42105918	rs1201689	C	G	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr15	42109223	rs1197689	T	C	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	42114414	rs2303517	C	T	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	42115019	rs34055060	C	T	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	42115426	rs1197688	A	G	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	42115479	rs142406250	C	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	42120437	rs13380315	C	G	1041.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	42132896	rs1122884	C	T	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	42133885	rs1648837	TG	CA	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	42134301	rs1648835	A	C	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr15	42134371	rs1648834	G	C	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	42134523	rs1648833	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	42134652	rs1672464	G	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42134839	rs1672465	T	C	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	42134930	rs1648832	G	T	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	42135988	rs1672466	C	T	2261.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	42137282	rs1648829	G	A	3003.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	42137576	rs1648828	C	T	1557.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=3.855;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	42137581	rs1648827	A	C	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	42138321	rs1197670	A	G	3007.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	42138456	rs1197669	G	A	7158.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr15	42139038	rs890508	G	A	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	42139390	rs3214531	GT	G	860.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	42143533	rs1197665	T	G	3046.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	42143597	rs890507	A	G	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	42144332	rs1197662	T	C	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42144978	rs111432071	GC	G	236.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:82,22:0.21:104
chr15	42144979	rs1197661	C	G	1780.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.12;ReadPosRankSum=-0.740;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:22,82:0.79:104
chr15	42145936	rs1197660	G	C	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	42147206	rs1648826	T	C	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	42147663	rs1672467	G	C	3650.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	42148550	rs28495273	T	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	42148800	rs56230030	C	T	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	42149596	rs1197675	C	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	42149952	rs1197674	T	C	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42150888	rs890503	G	A	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	42155841	rs1648841	T	C	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	42156321	rs1197657	T	C	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	42159290	rs2290553	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	42159623	rs8032462	T	C	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	42168400	rs2290559	C	T	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	42170499	rs1201690	T	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	42171462	rs12708402	C	T	997.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	42171537	rs1197683	A	G	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	42171800	rs2271283	T	C	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	42171877	rs1197685	A	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	42175507	rs1197692	T	C	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	42178155	rs1210795	T	C	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	42182442	rs12905012	T	C	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	42187492	rs1197701	T	C	7282.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr15	42187661	rs1704380	T	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	42211486	rs1704396	A	G	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	42235173	rs11631075	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	42287578	rs1668586	G	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	42289522	rs1704357	C	T	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	42292532	rs1668557	T	C	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	42297092	rs2598464	G	A	2778.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	42298133	rs1704366	A	G	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	42302330	rs202221046	G	GCCC	439.74	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.86;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr15	42302338	rs28736629	A	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	42302433	rs9920802	A	G	4004.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.06;SOR=1.511;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	42302437	rs9920824	G	C	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.73;SOR=1.440;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	42302520	rs9919954	C	T	1414.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	42306007	rs201095747	AT	A	1886.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	42306011	.	C	G	1895.77	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	42311454	rs2724935	T	G	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	42362298	rs12906547	T	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42362821	rs2459692	C	G	362.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	42363769	rs1668589	A	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	42364652	rs1668587	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	42371752	rs4924618	A	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	42373810	rs11635685	G	C	3308.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	42374125	rs11403193	C	CT	66.70	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=-0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.349;QD=5.56;ReadPosRankSum=0.285;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr15	42377744	rs605253	C	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	42433382	rs694456	A	T	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	42434254	rs655427	G	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	42434505	rs654527	C	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	42434837	rs1356410	T	C	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	42436599	rs636535	T	C	301.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	42437711	rs621560	T	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42519136	rs1678988	T	C	839.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	42520760	rs1678987	C	T	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	42520829	rs1712417	T	C	3327.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	42523341	rs56119841	T	TC	3674.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	42524065	rs1630294	T	C	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	42524165	rs1712420	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	42528676	rs1679012	C	T	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	42531768	rs11070363	C	T	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	42553218	rs5812215	AT	A	286.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-0.043;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:4,18:0.82:22
chr15	42560312	rs2412681	C	T	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	42564369	rs4244587	CA	TG	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	42564902	rs7181758	A	C	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	42568547	rs8043515	C	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	42568630	rs8023678	G	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	42570105	rs12916792	G	C	147.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.11;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	42570201	rs12916523	A	G	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	42570433	rs8024390	C	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	42570718	rs8024732	A	G	3675.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	42573067	rs8037020	C	T	145.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	42575963	rs2412689	A	G	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	42579822	rs11070371	T	C	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	42579948	rs8037627	T	C	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	42580106	rs8036596	A	C	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	42584909	rs4923939	C	T	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	42589987	rs4924651	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	42589996	rs4924652	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	42590034	.	TATTCATTC	T	926	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=2;HapScore=1;MGOF=29;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=926;QD=467.5;SC=TTCATTCATTTATTCATTCAT;SbPval=1.0;Source=Platypus;TC=4;TCF=0;TCR=4;TR=2;WE=42590049;WS=42590024;set=Platypus	GT:AD:AF:DP	1/1:2,2:0.50:4
chr15	42590035	.	ATT	A	59.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.96;ReadPosRankSum=1.960;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	42590038	.	CATTCAT	C	59.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.95;ReadPosRankSum=1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr15	42603083	rs2412694	C	T	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	42606094	rs7173358	A	G	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	42606153	rs141877658	A	AAACAACAACAAC	815.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	42606161	rs11637731	G	A	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.47;QD=40.81;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	42619508	rs1659215	C	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	42632965	.	GT	G,GTT	51	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.07;FR=0.4636,0.5363;HP=18;HapScore=3;MGOF=8;MMLQ=23;MQ=60.0;NF=0,0;NR=5,5;PP=7,51;QD=2.0;SC=GAGCATTTCTGTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=5,5;WE=42632973;WS=42632955;set=Platypus	GT:AF:DP	0/1:0.62:8
chr15	42694944	rs2241827	T	C	1245.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	42701688	rs3115883	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	42703406	rs3115884	T	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	42704105	rs3098423	C	T	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	42758159	rs2244773	T	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	42764519	rs7177521	G	C	3237.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr15	42805000	rs4573906	G	A	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	42820451	rs9302112	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	42820485	.	G	A	864.77	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	42851464	rs11070374	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	42930036	.	C	A	621.77	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	42930891	rs1197550	A	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	42985873	rs61732534	C	T	3665.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	43019980	rs117946783	G	A	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	43029100	.	G	C	1634.77	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	43037302	.	TA	T	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.363;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr15	43075531	rs9920092	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	43075942	rs34530003	T	TA	68.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=8.62;ReadPosRankSum=-0.157;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,7:0.88:8
chr15	43090520	rs16957168	C	T	1980.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.07;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	43109127	.	CAT	C	472	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=2;HapScore=2;MGOF=20;MMLQ=28;MQ=60.0;NF=8;NR=2;PP=472;QD=48.1;SC=AACAAATATACATATATATAT;SbPval=0.61;Source=Platypus;TC=10;TCF=8;TCR=2;TR=10;WE=43109136;WS=43109117;set=Platypus	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	43109140	rs66534174	AT	A	705.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	43109142	rs66947001	AT	A	706.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.26;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	43109385	rs7182753	C	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	43109479	rs34920950	T	A	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	43170690	rs10650948	T	TAC	608.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr15	43170793	rs6493068	A	G	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	43250243	rs140959617	A	G	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	43252764	rs3759792	A	G	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	43256121	rs2054389	T	C	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	43322113	rs3736054	C	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	43324942	rs6493077	C	T	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.46;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	43328663	rs3784265	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	43330175	rs7166596	A	T	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	43352041	rs4924704	G	A	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	43453056	rs11070392	C	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	43477690	rs375823704	G	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.762;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	43478113	rs540587	G	C	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	43478511	rs530118	C	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	43483537	rs495286	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;QD=26.25;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	43527236	rs579178	A	G	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	43568999	rs530683	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	43585021	.	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	43690427	rs116914366	A	G	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	43698895	.	CAAT	C	163.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr15	43784000	rs555252	C	T	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	43903198	.	TTG	T	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.203;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-3.066;QD=4.04;ReadPosRankSum=-1.058;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr15	43924420	rs144399798	C	T	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-7.142;QD=7.48;ReadPosRankSum=-1.757;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr15	43924422	rs142408593	T	C	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=2.128;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-7.142;QD=7.48;ReadPosRankSum=-1.327;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:62,20:0.24:82
chr15	43924652	.	G	A	412.77	.	AC=1;AF=0.500;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr15	43927623	rs375933133	CA	C	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-2.225;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chr15	43941125	rs2470122	G	C	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	44002670	rs373529135	TTG	T	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.327;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-2.273;QD=5.15;ReadPosRankSum=-0.821;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr15	44028569	rs56181031	G	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.32;QD=28.85;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	44038899	rs2411284	C	T	2556.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	44061802	rs1053492	C	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	44062874	rs7181912	A	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	44068160	rs3844075	C	G	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	44068698	rs199658589	C	G	6399.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr15	44084705	rs4644832	G	A	6005.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr15	44090854	rs654276	T	C	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	44091351	rs656473	A	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:2,46:0.96:48
chr15	44120559	rs678084	T	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	44216559	rs5812256	C	CT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.07;ReadPosRankSum=0.459;SOR=0.240;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	44778936	rs2453275	T	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	44794330	rs144086133	C	CTT	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	44943757	rs3759871	A	G	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	44951174	rs7165146	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	44966389	rs8026845	T	C	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr15	45028919	rs11388295	C	CT	333.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr15	45047134	rs2470911	G	A	6105.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	45047573	rs3100139	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	45048757	rs3759881	T	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.63;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	45059390	rs6493127	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	45060014	rs3100143	A	T	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	45123909	.	TA	T	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=5.684;MLEAC=1;MLEAF=0.500;MQ=52.80;MQRankSum=-2.154;QD=2.16;ReadPosRankSum=1.171;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr15	45250755	rs373082	CA	TG	286.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	45353230	rs2854446	C	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	45357410	rs2854437	T	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	45361011	rs28662287	C	T	197.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	45361046	.	AT	A	166.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.21;MQRankSum=0.431;QD=13.89;ReadPosRankSum=0.210;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr15	45387550	rs199138	A	G	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	45388382	rs2554451	C	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.73;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	45391566	rs269869	A	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	45392075	rs269868	G	A	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	45398965	rs269862	G	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	45399467	rs190599	A	G	11706.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr15	45400164	rs269861	T	C	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	45400358	rs269860	C	G	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	45404066	rs2001616	G	A	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	45404979	rs182090	T	G	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	45405463	rs269856	G	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	45406718	rs187290	C	T	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	45408414	rs2576090	C	G	3795.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	45408691	rs2576091	C	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	45408699	rs2252371	C	T	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.27;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	45408710	rs2554459	A	G	3242.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	45408933	rs2576092	T	C	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	45409271	rs955152	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	45424286	rs1706810	C	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	45433646	rs1648283	T	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	45439910	rs938129	A	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	45444518	rs1706804	A	G	8651.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr15	45445499	rs1648304	G	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	45445691	.	AAT	A	3049.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=32.44;ReadPosRankSum=-0.970;SOR=1.038;set=HC	GT:AD:AF:DP	1/1:2,92:0.98:94
chr15	45445732	.	GTGTGTGTGTGTGTA	G	374.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.14;ReadPosRankSum=0.771;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:21,20:0.49:41
chr15	45445734	.	GTGTGTGTGTGTA	G	254.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.92;ReadPosRankSum=0.066;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr15	45445746	.	A	G	311	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=2;MGOF=151;MMLQ=27;MQ=59.57;NF=8;NR=22;PP=311;QD=11.5257070849;SC=GTGTGTGTGTATAATGGGGAG;SbPval=0.48;Source=Platypus;TC=32;TCF=8;TCR=24;TR=30;WE=45445754;WS=45445736;set=Platypus	GT:AD:AF:DP	1/1:2,30:0.94:32
chr15	45446084	rs11306605	CA	C	463.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,31:0.91:34
chr15	45446156	rs2458236	C	T	2327.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.03;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	45454720	rs1706811	G	A	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.37;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	45467540	rs1632144	C	G	1533.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	45544319	rs2899376	T	G	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	45545378	rs17215668	GC	G	437.06	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:2,18:0.90:20
chr15	45545478	rs11854484	C	T	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	45554267	rs1060896	C	A	2637.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	45556829	rs11631021	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	45557456	rs11632419	C	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	45557468	rs2271438	A	G	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	45560076	rs74966124	C	T	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	45561868	rs2413769	C	A	193.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	47873740	.	G	A	95.03	.	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	48053730	rs9920019	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	48058071	rs532598	G	A	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	48058484	rs528882	G	T	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	48059137	rs11353659	CT	C	94.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	48063076	rs568215	T	C	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	48443699	rs2470103	T	C	5299.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	48450517	rs3736482	T	C	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	48460786	rs11070626	T	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	48460927	rs8023906	C	T	3653.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	48538979	rs35669481	A	AAAC	974.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	48539026	rs11636073	A	T	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	48539043	rs8028035	G	A	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=39.74;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	48541700	rs2279365	G	A	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	48561834	rs1484551	A	G	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	48580713	rs1552311	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	48623248	rs66822811	TCGGGCGCGGTGTCTTGCCCACAGCTTGGGGAGCGGCCC	T	459.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	48712699	rs3214528	AT	A	313.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	48713996	rs1820488	G	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	48720526	rs363832	G	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	48729648	rs2042746	T	C	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	48736684	rs2303502	A	T	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.46;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	48749040	rs6145556	C	CGTGT,CGT	566.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/1:0.81:16
chr15	48807637	rs4775765	C	T	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	48903126	rs1018148	A	G	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	49040864	rs34352957	TA	T	38.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.47;ReadPosRankSum=1.465;SOR=2.584;set=HC	GT:AD:AF:DP	0/1:1,6:0.86:7
chr15	49098016	rs1426200	C	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	49143232	rs17467239	G	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	49149828	rs4774526	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	49168649	rs34156861	TAC	T	132.06	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:1,5:0.83:6
chr15	49168841	rs34224664	G	A	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.63;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	49285001	rs34895054	G	C	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	49325289	rs11638215	A	C	1863.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	49420816	rs17394420	A	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	49421868	rs507054	T	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	49423098	rs2289390	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	49429410	rs17473148	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	49487225	rs11635814	T	C	202.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	49620200	rs1055254	C	T	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	49716845	rs16962440	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	49834128	rs12905865	T	G	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr15	49860546	rs35392010	TA	T	817.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr15	49867122	rs12901416	A	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	49867148	rs12902794	T	C	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chr15	49867323	rs12902107	G	A	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.03;ReadPosRankSum=-1.244;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:21,34:0.62:55
chr15	49882182	.	T	C	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.38;ReadPosRankSum=0.107;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:49,33:0.40:82
chr15	49917341	rs3210227	G	A	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.144;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr15	49923026	rs1976551	C	G	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr15	49927093	rs28671247	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	50152274	rs4494483	T	A	749.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr15	50152583	rs4774549	G	T	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	50158695	rs11630021	C	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:133,126:0.49:259
chr15	50189303	rs2413975	A	G	216.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr15	50189448	rs2413976	C	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	50193553	rs2009833	G	A	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr15	50193914	rs143424523	C	CTT	207.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:29,9:0.24:38
chr15	50209258	rs16963067	T	C	1959.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:76,89:0.54:165
chr15	50212785	rs4426299	G	A	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr15	50226313	rs2452524	G	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:101,92:0.48:193
chr15	50254280	rs12442430	T	C	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=1.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.672;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:15,13:0.46:28
chr15	50272085	rs8034382	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr15	50279662	rs16963151	T	C	2501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=2.823;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-2.285;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:120,123:0.51:243
chr15	50311135	rs12591825	C	A	3387.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:159,165:0.51:324
chr15	50311148	rs11070741	A	G	8075.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr15	50474766	rs1648348	A	C	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:153,115:0.43:268
chr15	50474900	rs34490804	C	T	3874.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:193,180:0.48:373
chr15	50489677	rs1863511	A	T	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	50497354	rs2278166	G	T	657.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr15	50521265	rs5812509	T	TA	3131.73	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:166,128:0.44:294
chr15	50570999	rs11372405	G	GT	547.74	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:3,28:0.90:31
chr15	50581634	rs34330339	T	TA	575.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.350;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.792;QD=5.33;ReadPosRankSum=0.290;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:61,47:0.44:108
chr15	50596341	.	G	GA	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.792;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.094;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.681;QD=1.17;ReadPosRankSum=0.992;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr15	50601811	rs11636564	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr15	50646900	rs113692002	G	A	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:71,57:0.45:128
chr15	50652513	rs139520399	C	CA	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr15	50731390	rs11632708	C	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	50754288	rs11431370	A	AT	238.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	50754339	rs3098169	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	50773755	rs3131561	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	50774431	rs11633608	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	50776640	rs4775889	A	G	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	50781963	rs3098176	T	A	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.24;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	50782434	.	G	GT	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=-2.102;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:99,21:0.17:120
chr15	50782703	rs11638390	A	G	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	50787868	rs17598061	T	G	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	50789527	rs113527256	T	TA	656.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	50821945	rs3098200	G	A	2513.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	50822178	rs62019151	T	C	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:29,34:0.54:63
chr15	50830876	rs72740407	A	T	544.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:29,24:0.45:53
chr15	50833113	rs2003359	A	G	292.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	50836243	rs3109878	T	G	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	50836284	rs12443399	G	C	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.140;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr15	50854029	rs75278275	TA	T	432.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=0.708;QD=10.56;ReadPosRankSum=0.724;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:10,31:0.76:41
chr15	50867082	rs473357	G	A	3677.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	50867142	rs16963774	C	T	1945.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:140,96:0.41:236
chr15	50867441	rs16963775	G	C	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr15	50873121	rs147578012	A	AAC	1047.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:65,43:0.40:108
chr15	50873262	rs2414060	A	G	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr15	50878478	rs539383	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	50878509	rs1395297	T	C	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=-0.290;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:10,6:0.38:16
chr15	50878574	rs3109894	G	A	401.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr15	50882044	rs200417073	T	TTTTTTTTG	160.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.155;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=6.054;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-0.731;QD=5.74;ReadPosRankSum=0.329;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr15	50882045	rs113973270	T	TTTTTTTG	209.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.751;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.003;QD=8.07;ReadPosRankSum=1.057;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	50884090	rs78432285	C	T	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr15	50885976	rs567109	G	T	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	50888619	rs675011	A	T	441.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.54;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	50899211	rs12439744	C	T	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr15	50899309	rs11633404	C	A	2194.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	50901929	rs35281039	TA	T	1361.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:5,80:0.94:85
chr15	50903600	rs4775894	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	50906498	rs2163098	C	G	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=0.852;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:98,79:0.45:177
chr15	50911865	rs34352984	AT	A	159.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.99;ReadPosRankSum=-0.540;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:8,12:0.60:20
chr15	50924995	rs2292175	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	50926516	rs62017191	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:16,11:0.41:27
chr15	50926523	rs140773609	AAAAT	A	423.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:22,13:0.37:35
chr15	50935484	rs150936263	C	CA	236.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr15	50941108	rs2063011	C	G	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	50941131	rs2063010	A	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr15	50941161	rs62017198	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr15	50950114	rs147148942	ATACC	A	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.79;ReadPosRankSum=0.431;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr15	50950141	rs17645826	T	C	115.78	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr15	51012430	rs62018798	C	A	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=3.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=1.247;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:12,4:0.25:16
chr15	51017527	rs140174698	AAAAAC	A	302.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	51039994	rs17702595	A	G	124.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:3,6:0.67:9
chr15	51040384	rs61751063	T	C	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.501;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.07;ReadPosRankSum=-1.630;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr15	51040798	rs8035452	T	C	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr15	51201158	rs76674534	A	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:72,58:0.45:130
chr15	51201281	rs72742383	A	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr15	51204364	rs1147129	G	A	5960.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr15	51204394	rs3214932	C	CT	7890.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	51207818	rs2663553	G	C	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	51217475	rs2306332	G	A	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr15	51276128	rs2306335	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	51293164	rs3840015	G	GT	269.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr15	51350655	rs76241791	AT	A	1039.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:3,54:0.95:57
chr15	51502844	rs4646	A	C	6165.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr15	51502986	rs10046	G	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:116,128:0.52:244
chr15	51503881	rs28757202	T	A	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=6.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.73;ReadPosRankSum=-1.901;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:31,44:0.59:75
chr15	51503897	rs28757201	G	A	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=0.967;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:32,40:0.56:72
chr15	51504061	rs28757200	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr15	51504811	rs1065779	A	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr15	51507508	rs2289105	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:21,18:0.46:39
chr15	51507782	rs2289106	T	G	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:81,72:0.47:153
chr15	51510702	rs1143704	T	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:19,13:0.41:32
chr15	51510868	rs4324076	A	C	2214.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:101,108:0.52:209
chr15	51519869	rs149494347	C	CAATAAATAAATAAATA	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	51519945	rs28892005	A	AAAG	1877.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr15	51520206	rs1065778	T	C	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr15	51529112	rs700518	T	C	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.646;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.607;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.65;ReadPosRankSum=-0.969;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:74,73:0.50:147
chr15	51529265	rs3759811	T	C	580.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr15	51534547	rs727479	C	A	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=0.239;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr15	51634255	rs2446421	T	G	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	51634304	rs11632569	G	T	1794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=1.528;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.903;QD=15.88;ReadPosRankSum=0.844;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:61,52:0.46:113
chr15	51634312	rs11632571	G	T	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.979;QD=17.27;ReadPosRankSum=1.226;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:53,42:0.44:95
chr15	51634322	rs72363270	TCTTCTCCCCTGGCCAGG	T	1116.73	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:46,32:0.41:78
chr15	51669704	rs76233942	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,43:0.51:84
chr15	51669741	rs16964316	G	A	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr15	51675501	rs10162847	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:20,28:0.58:48
chr15	51675625	rs2445738	C	T	659.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr15	51676232	rs2168623	A	G	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:40,44:0.52:84
chr15	51689624	rs1147142	A	C	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	51689772	rs17648128	G	A	6479.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr15	51743718	rs16964357	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr15	51748610	rs3736485	A	G	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	51749726	rs930920	A	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	51750652	rs11630842	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	51750846	rs7165887	G	A	4386.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	51751091	rs111734926	TAGCAGC	T	2058.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	51758345	rs10706765	CA	C	413.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr15	51770456	rs11291027	AT	A	692.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	51783820	rs10851500	T	C	8936.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr15	51783981	rs12101858	G	C	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	51791559	rs12102203	A	G	12145.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr15	51795172	rs12592889	G	A	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	51857220	rs11070857	C	T	103.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	51868373	rs2414105	A	G	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	51868380	.	T	TAAAAAAAAAAAA	290.80	.	AC=2;AF=1.00;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	51914662	rs2278990	G	A	5146.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr15	51914716	rs2278989	T	C	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr15	51914778	rs6493514	T	G	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	51974910	rs2054166	A	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	51981596	rs11437327	G	GT	3661.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.21;SOR=1.499;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	51981597	.	G	GTGT,GTGTGT	3365.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=70.12;SOR=3.109;set=HC	GT:AD:AF:DP	1/2:0,19,29:0.40,0.60:48
chr15	52017345	rs2414116	A	G	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr15	52029406	rs2606128	G	A	134.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr15	52043327	rs12903500	C	T	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:134,114:0.46:248
chr15	52060657	rs61348403	C	CT	976.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.347;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=1.103;SOR=0.444;set=HC	GT:AD:AF:DP	0/1:76,72:0.49:148
chr15	52155314	rs2570251	T	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr15	52185937	rs2959307	G	A	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr15	52185961	rs11370809	C	CA	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.144;QD=5.47;ReadPosRankSum=0.829;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:38,36:0.49:74
chr15	52186158	rs2959285	A	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr15	52192262	rs113447185	A	AGTTAT	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,8:0.36:22
chr15	52239380	rs2414122	C	A	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr15	52246665	rs2959293	G	A	322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.51;ReadPosRankSum=1.553;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:24,19:0.44:43
chr15	52250789	rs2593187	T	C	53.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.96;ReadPosRankSum=-1.282;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr15	52252799	rs2258248	C	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,27:0.42:64
chr15	52257874	rs2241503	A	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr15	52264094	rs17612102	T	C	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr15	52404862	rs2231292	A	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr15	52405006	.	C	T	253.77	.	AC=1;AF=0.500;AN=2;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	52415086	rs142280018	T	TACACAC	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr15	52420982	rs2414134	T	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:68,37:0.35:105
chr15	52421000	rs2414135	A	G	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr15	52433397	rs17612637	C	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:194,111:0.36:305
chr15	52446200	rs6493537	G	A	2701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.468;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.433;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.86;ReadPosRankSum=0.490;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:138,136:0.50:274
chr15	52446260	rs35581121	C	T	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:65,79:0.55:144
chr15	52472120	rs114984699	T	C	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:99,69:0.41:168
chr15	52486335	rs59434591	G	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr15	52486337	rs79610645	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr15	52487523	rs3751604	T	A	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:35,61:0.64:96
chr15	52497993	rs77561658	G	T	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr15	52500672	rs62016466	G	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr15	52504142	rs2278295	T	C	702.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	52505563	rs3751608	C	T	1045.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:43,48:0.53:91
chr15	52506655	rs6493546	C	T	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.38;ReadPosRankSum=-0.243;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr15	52513210	rs17541016	T	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr15	52515678	rs4405492	G	T	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	52531941	rs11635028	A	G	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	52534344	rs3751631	G	A	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	52539673	rs10163109	C	T	4221.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.060;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	52548784	.	A	ACACGCGCGCG	2769.73	.	AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.96;QD=32.97;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:4,80:0.95:84
chr15	52553007	rs4497629	C	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	52556429	rs4776032	A	G	2989.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=3.278;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.55;ReadPosRankSum=-0.469;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,116:0.99:117
chr15	52561891	.	A	AT	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.823;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=5.133;QD=0.54;ReadPosRankSum=0.330;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:147,35:0.19:182
chr15	52564191	rs3751629	T	C	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	52571270	.	G	GT	226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.281;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:63,27:0.30:90
chr15	52587880	rs12907067	C	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	52615712	rs2290334	T	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr15	52628489	rs8035295	T	C	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	52640990	rs11386962	T	TA	191.84	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr15	52643564	rs1058219	G	A	1472.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr15	52667450	rs3816449	T	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:45,39:0.46:84
chr15	52667552	rs2414145	G	A	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	52668822	rs1009157	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	52671784	rs2242058	C	T	1778.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:131,88:0.40:219
chr15	52675261	rs4774621	T	C	4201.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	52681573	rs1724623	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	52681643	rs71425744	AT	A	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.95;ReadPosRankSum=0.969;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr15	52684004	rs1669872	C	A	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	52689526	rs2924130	T	C	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	52689631	rs1724577	T	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	52702400	rs10518689	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr15	52702699	rs72623980	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:16,16:0.50:32
chr15	52708534	rs11856752	T	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:25,33:0.57:58
chr15	52725334	rs11853875	C	T	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,40:0.54:74
chr15	52897478	rs2414163	T	C	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	52901433	rs12915981	C	T	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	52901638	rs3751614	T	C	5515.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	52901977	rs2414166	G	A	7519.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr15	52904046	rs4776063	C	A	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	53081859	rs74805019	G	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chr15	53082214	rs149161886	GTC	G	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=-0.777;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:59,12:0.17:71
chr15	53815527	.	AAG	A	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.747;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.858;QD=0.59;ReadPosRankSum=0.103;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:99,16:0.14:115
chr15	53994493	rs6416452	A	G	3468.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	53998314	rs690235	G	T	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	54008795	rs690337	T	C	2586.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:192,137:0.42:329
chr15	54008845	rs690346	T	C	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr15	54306925	rs12437941	G	A	4042.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	54307925	rs17731958	C	T	2397.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:117,117:0.50:234
chr15	54336662	rs76849034	A	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	54529629	rs7162346	T	C	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=0.160;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:34,61:0.64:95
chr15	54556259	rs12917364	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr15	54556332	rs76795278	T	C	2194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=3.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=0.865;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:78,107:0.58:185
chr15	54557520	rs117555253	G	A	444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=1.080;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:34,25:0.42:59
chr15	54557674	rs117887090	A	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.89;ReadPosRankSum=-1.501;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr15	54630552	rs57449290	T	TTGTC	2611.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:72,69:0.49:141
chr15	54630758	rs12913366	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr15	54685448	rs73417774	G	A	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,23:0.55:42
chr15	54685463	rs489526	G	A	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	54792428	rs8025195	A	G	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr15	54841874	rs9302181	A	G	268.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr15	54847509	rs8039515	G	T	517.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr15	54847677	rs11639005	C	T	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:81,80:0.50:161
chr15	54847786	rs11639014	A	G	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:49,59:0.55:108
chr15	54914716	rs2681964	C	T	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	54915975	rs2414332	A	T	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	54918911	rs11856235	T	C	1019.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	54918943	rs11852743	G	A	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	54919047	rs1520411	A	G	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr15	55477480	rs28592928	A	T	104.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	55489065	rs9300	G	A	6239.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr15	55489104	rs13733	A	G	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr15	55497691	rs1050931	G	A	2487.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	55653031	rs501231	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr15	55657617	rs377151087	GTT	G	222.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	55710365	rs56070549	T	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.62;ReadPosRankSum=-1.348;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:43,33:0.43:76
chr15	55710369	rs6493785	T	A	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.96;SOR=1.439;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	55759193	rs600753	T	C	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr15	55838554	.	T	C	2501.77	.	AC=1;AF=0.500;AN=2;DP=201;set=Intersection	GT:AD:AF:DP	0/1:85,116:0.58:201
chr15	55840995	rs2617227	A	G	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	55841032	rs12917202	A	G	955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.41;ReadPosRankSum=2.242;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:32,45:0.58:77
chr15	55881111	rs1992236	A	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	55965521	rs28556884	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,31:0.38:82
chr15	55974742	rs200766876	TTTTATTTATTTA	T,TTTTATTTATTTATTTATTTA	1736.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=95;set=Intersection	GT:AF:DP	1/2:0.51,0.49:43
chr15	56030543	rs12906885	G	A	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	56030756	rs4774222	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	56032519	rs10152116	G	A	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	56032975	rs7182733	G	A	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	56034878	rs11632579	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	56035010	rs12910180	G	A	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	56122347	rs2288344	T	G	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr15	56122664	rs12910830	T	C	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	56125135	rs8024944	C	A	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:58,50:0.46:108
chr15	56125182	rs8026172	T	A	899.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:75,50:0.40:125
chr15	56130286	rs11071227	A	T	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	56130689	rs12906245	T	A	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.64;ReadPosRankSum=0.289;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:23,31:0.57:54
chr15	56130909	rs8028559	A	G	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	56139153	rs2288346	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.14;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	56140520	rs12911101	A	G	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-1.928;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr15	56140995	rs12232351	T	A	2080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.67;ReadPosRankSum=-1.587;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:93,102:0.52:195
chr15	56144888	rs201121993	AATATATATAT	A	595.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.72;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	56152598	rs4774228	A	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr15	56152729	rs2303579	T	C	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	56152872	rs2303580	C	T	5137.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	56161919	rs1912402	C	T	294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.56;ReadPosRankSum=0.451;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:23,16:0.41:39
chr15	56207983	rs7174459	C	T	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:139,138:0.50:277
chr15	56208933	rs1912403	T	C	2468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=1.405;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.60;ReadPosRankSum=-0.302;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:156,131:0.46:287
chr15	56216793	rs2271289	C	T	1182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-1.101;SOR=0.996;set=HC	GT:AD:AF:DP	0/1:49,55:0.53:104
chr15	56243792	rs10718511	TA	T	77.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=12.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	56243831	.	G	A	34	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5051;HP=2;HapScore=2;MGOF=137;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=34;QD=22.9237375157;SC=TTTAATTATTGCTTACCCCAA;SbPval=0.57;Source=Platypus;TC=4;TCF=1;TCR=3;TR=3;WE=56243839;WS=56243821;set=Platypus	GT:AD:AF:DP	1/0:1,3:0.75:4
chr15	56258809	rs6493829	A	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.64;ReadPosRankSum=2.260;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr15	56386577	rs7170589	T	G	6760.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	56387859	rs3803459	T	C	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:208,190:0.48:398
chr15	56387931	rs11071247	C	T	9931.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr15	56388033	rs12439907	T	C	3625.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:166,167:0.50:333
chr15	56390186	rs4363812	T	C	635.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr15	56434956	rs1550586	A	G	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:28,46:0.62:74
chr15	56471449	rs11637789	T	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr15	56535174	rs2460649	A	G	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	56657581	rs2682033	A	C	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	56680944	rs1477589	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	56686299	rs72742631	T	C	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr15	56719797	rs795785	G	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=1.659;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr15	56720715	rs1554410	T	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr15	56721264	rs795787	G	A	1836.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	56721406	rs808730	C	T	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	56726205	rs137878743	TTATA	T	644.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr15	56756285	rs1715919	T	G	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.01;ReadPosRankSum=2.684;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:61,74:0.55:135
chr15	56923536	rs3803457	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	56923714	rs8043381	G	A	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	56946296	rs8028457	C	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	56946980	rs12911381	T	G	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	56961272	rs12911191	T	A	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr15	56974684	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.20;ReadPosRankSum=1.341;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr15	56981703	rs1871861	T	A	263.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.31;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	57210297	rs3803455	G	A	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	57210562	rs213150	C	A	4437.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	57210627	rs2165461	G	C	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	57364814	rs2951904	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	57484572	.	C	CT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.460;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=1.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.68;ReadPosRankSum=-0.661;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:144,33:0.19:177
chr15	57484613	rs12914481	G	A	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	57484679	rs62022214	T	A	263.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:31,14:0.31:45
chr15	57511918	rs11395092	C	CT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.36;ReadPosRankSum=0.002;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr15	57523542	rs1037958	A	G	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	57524756	rs2248620	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	57524857	rs2290938	T	C	4731.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	57555523	rs7182038	C	A	3478.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	57731335	rs1280395	A	C	10430.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr15	57731573	rs7182648	C	T	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:248,100:0.29:348
chr15	57731728	rs1280396	A	G	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	57732743	rs1280398	T	C	6223.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr15	57732774	rs17820299	C	T	2900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.68;ReadPosRankSum=-2.328;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:57,128:0.69:185
chr15	57743933	rs1280406	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	57744311	rs1018269	T	A	1198.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	57744582	rs1018268	A	G	343.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	57746071	rs2271405	T	C	300.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	57817066	rs2270488	C	G	91.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:12,6:0.33:18
chr15	57835868	rs1620315	C	G	1853.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=1.429;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=-0.199;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:199,108:0.35:307
chr15	57835903	rs1620402	T	G	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:161,93:0.37:254
chr15	57836009	rs145550987	C	A	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr15	57836552	rs1908189	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr15	57836823	rs8029295	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	57838258	rs2635390	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	57884181	rs1690328	T	C	1300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=-0.430;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:57,66:0.54:123
chr15	57884219	rs2453089	A	G	1415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.152;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=3.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.33;ReadPosRankSum=2.082;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:66,71:0.52:137
chr15	57896366	rs2172611	A	T	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr15	57896658	rs2453091	C	A	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:36,51:0.59:87
chr15	57910164	rs937254	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr15	57910444	rs935548	A	G	7309.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr15	57914094	rs2934439	G	T	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr15	57917821	rs2470360	C	T	612.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr15	57918069	rs2069133	A	G	3564.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:72,165:0.70:237
chr15	57918090	rs2958059	A	G	5254.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	57953564	rs986868	C	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr15	57967219	rs1991252	T	C	11649.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr15	57967285	rs5812908	AT	A	721.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=4.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=2.360;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:146,68:0.32:214
chr15	57976523	rs6493944	A	G	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	57976583	rs2554032	A	C	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	57999304	rs11858659	G	C	6012.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:148,269:0.65:417
chr15	58000981	rs1062707	C	T	1770.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:152,94:0.38:246
chr15	58287435	rs3985733	C	A	183.78	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.42;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	58465171	rs2292712	G	A	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:63,46:0.42:109
chr15	58465483	rs2292713	C	T	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	58471368	rs2249783	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,35:0.36:96
chr15	58476092	rs3832977	G	GA	715.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:82,43:0.34:125
chr15	58476281	rs1867380	A	G	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:124,63:0.34:187
chr15	58571401	rs72739147	A	T	4258.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:92,189:0.67:281
chr15	58723597	rs36041167	G	A	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:101,64:0.39:165
chr15	58729144	rs17190517	C	T	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	58833938	rs6076	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chr15	58837910	rs2414592	T	C	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	58838010	rs6083	A	G	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:76,146:0.66:222
chr15	58838038	rs6084	C	G	1418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-3.121;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:142,82:0.37:224
chr15	58840450	rs1007543	A	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	58853079	rs3829462	C	A	4499.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr15	58853109	rs3829461	A	G	5793.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	58853212	rs71964604	GAC	G	10552.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	58853218	rs55913623	C	T	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr15	58853307	rs4774305	C	G	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	58853363	rs1869129	C	T	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	58857230	rs4775080	G	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	58857255	rs4775081	A	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	58857378	rs17269397	A	G	1594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.96;ReadPosRankSum=-0.819;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:142,87:0.38:229
chr15	58860963	rs6074	C	A	1790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.671;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=-1.263;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:78,87:0.53:165
chr15	58891949	rs35772938	GA	G	1008.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.065;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=10.29;ReadPosRankSum=0.024;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:30,68:0.69:98
chr15	58904237	rs8039791	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:53,76:0.59:129
chr15	58932932	rs7165402	T	C	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:41,94:0.70:135
chr15	58935986	rs2303532	T	C	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr15	58938436	rs12912286	T	C	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,41:0.73:56
chr15	58947476	rs12915950	C	G	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr15	58947625	rs12916010	A	G	1025.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.54;ReadPosRankSum=0.177;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:14,48:0.77:62
chr15	58983425	rs7161889	G	C	2877.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:59,125:0.68:184
chr15	58983588	rs7163162	T	A	3977.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:94,184:0.66:278
chr15	58984394	rs12437998	G	C	4860.77	.	AC=1;AF=0.500;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	0/1:97,200:0.67:297
chr15	58984407	rs12437955	C	T	4618.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:109,202:0.65:311
chr15	58985164	rs4774310	T	G	6160.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:187,281:0.60:468
chr15	59010111	rs6494034	C	G	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:63,121:0.66:184
chr15	59080203	rs7169205	A	G	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:16,20:0.56:36
chr15	59172382	rs34042545	T	TG	1377.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	59185929	rs4238332	T	C	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	59190930	rs10518991	C	T	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	59205822	rs149127382	C	T	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:111,50:0.31:161
chr15	59213678	rs11630160	G	A	7037.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	59225818	rs2279719	G	A	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	59296491	rs1446240	G	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	59399501	.	C	CT	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=1.210;SOR=1.040;set=HC	GT:AD:AF:DP	0/1:36,16:0.31:52
chr15	59466511	.	T	C	2153.77	.	AC=1;AF=0.500;AN=2;DP=360;set=Intersection	GT:AD:AF:DP	0/1:238,122:0.34:360
chr15	59494673	rs2306787	C	T	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	59499179	rs3809530	G	A	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	59499228	rs3809529	C	T	7715.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	59499274	rs3809528	C	A	7175.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.864;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr15	59500116	rs3825937	T	C	4545.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:4,168:0.98:172
chr15	59510189	rs2230155	G	A	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr15	59515446	rs2306780	C	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	59515514	rs10711975	GA	G	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.12;ReadPosRankSum=1.523;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr15	59516798	rs72746830	C	G	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr15	59516875	rs2306781	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.510;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=2.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=0.274;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:58,17:0.23:75
chr15	59524043	rs2306783	G	A	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr15	59524056	rs7165587	T	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	59548475	rs4508371	C	T	20631.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,783:1.00:783
chr15	59664607	rs7175010	C	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	59750930	rs11071448	G	A	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	59750960	rs7359171	A	G	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	59752053	rs3803445	G	A	1525.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	59784334	rs4291860	C	A	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	59784493	rs4296198	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	59784648	rs4417505	A	G	273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.819;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr15	59799278	rs4278683	T	C	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	59806496	rs111778770	G	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.113;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-3.129;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:19,40:0.68:59
chr15	59911892	rs3743119	G	T	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	59931429	rs2306354	G	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	59931556	rs8033208	G	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	59944203	rs11637071	A	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	59944300	rs4774340	T	C	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	59960155	rs6151570	G	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	59960941	rs6151566	CCT	C	759.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	59960980	rs6151565	C	T	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	59961646	rs2307273	T	C	650.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	59963235	.	G	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=2.539;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-4.608;QD=3.47;ReadPosRankSum=-1.983;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr15	59963240	.	C	G	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=2.580;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-4.716;QD=3.32;ReadPosRankSum=-2.405;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr15	59963245	.	C	T	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-4.468;QD=3.63;ReadPosRankSum=-1.381;SOR=0.132;set=HC	GT:AD:AF:DP	0/1:20,2:0.09:22
chr15	59963272	rs56337803	C	CA	326.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.301;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=7.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=0.975;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr15	59964798	rs4774342	C	G	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	59972372	rs6151510	A	C	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=29.07;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	60639874	rs12442554	G	A	5451.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:160,254:0.61:414
chr15	60643302	rs3743269	T	C	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	60644074	rs11633619	C	T	3208.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:369,184:0.33:553
chr15	60644157	rs11633657	C	T	846.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.324;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=1.154;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:131,52:0.28:183
chr15	60649579	rs5813020	TC	T	3234.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	60674672	rs3759911	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:70,131:0.65:201
chr15	60678298	rs11855679	T	A	3293.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	60678328	rs11858864	C	T	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	60678350	rs7182242	T	C	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	60685141	.	TAAA	T,TA	724.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.323;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.763;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.53;MQRankSum=0.718;QD=18.58;ReadPosRankSum=0.144;SOR=1.334;set=HC	GT:AD:AF:DP	1/2:7,16,16:0.41,0.41:39
chr15	60689877	rs12904258	A	G	566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.57;ReadPosRankSum=0.293;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:23,26:0.53:49
chr15	60689927	rs12904756	G	C	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	60690089	rs12904657	A	G	4613.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:147,219:0.60:366
chr15	60720488	rs59228235	T	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	60724118	rs12437617	C	G	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	60724317	rs60675189	T	TA	251.75	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	60728475	.	G	GA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.010;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=2.682;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.753;QD=2.03;ReadPosRankSum=1.567;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr15	60734697	rs1063100	A	G	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	60740915	rs1901993	C	T	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	60742063	rs1869484	G	T	3692.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	60748783	.	T	TACACAC	98.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	60748810	rs7163427	T	A	131.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	60771289	rs3743267	A	G	30328.77	.	AC=2;AF=1.00;AN=2;DB;DP=1139;set=Intersection	GT:AD:AF:DP	1/1:0,1138:1.00:1138
chr15	60771438	rs11389291	G	GC	3348.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	60789798	rs11071539	G	T	6610.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr15	60797607	rs7171309	T	C	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	60823896	rs76532214	A	C	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr15	60824108	rs10851682	T	C	4615.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	61521567	.	A	G	415	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=2;HapScore=2;MGOF=55;MMLQ=23;MQ=57.51;NF=8;NR=12;PP=415;QD=22.4885606274;SC=CGACCGGCGAAAGCAGGAGGG;SbPval=0.57;Source=Platypus;TC=20;TCF=8;TCR=12;TR=20;WE=61521589;WS=61521557;set=Platypus	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	61521579	.	AAA	GAG	847	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=1.0000;HP=4;HapScore=2;MGOF=55;MMLQ=28;MQ=58.52;NF=7;NR=13;PP=847;QD=45.0233937431;SC=GCAGGAGGGAAAAAGCAGGCG;SbPval=0.67;Source=Platypus;TC=21;TCF=8;TCR=13;TR=20;WE=61521589;WS=61521557;set=Platypus	GT:AD:AF:DP	1/1:1,20:0.95:21
chr15	62146969	rs2241491	T	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	62147207	rs2241492	T	A	1273.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr15	62148730	rs3833021	TA	T	1040.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	62160758	rs7163441	C	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	62167017	rs6494299	G	A	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	62167897	rs12708469	G	A	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	62169072	rs11071634	A	G	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	62172985	rs3809517	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	62175019	rs12912348	T	C	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr15	62199342	rs28413840	T	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	62201333	rs35201581	GA	G	3140.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:13,168:0.93:181
chr15	62202290	rs34965045	C	T	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	62202482	rs10851704	C	T	11601.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr15	62210274	rs11071639	G	T	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	62214503	rs77733354	T	C	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr15	62223273	rs9788670	C	T	6458.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr15	62232796	rs7172838	C	T	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	62246554	rs17238266	T	C	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.652;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=2.225;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr15	62256131	rs114941240	A	G	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:43,69:0.62:112
chr15	62265019	rs3833020	A	AT	744.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	62265471	rs191897901	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr15	62265507	rs11071645	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	62284087	.	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.68;ReadPosRankSum=-0.853;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr15	62284101	rs8032433	A	G	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	62304420	rs140372940	GACACAC	G,GAC	1381.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.54;SOR=1.911;set=HC	GT:AD:AF:DP	1/2:0,24,16:0.60,0.40:40
chr15	62325518	rs12917535	A	T	37.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr15	62327127	rs2414758	T	C	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	62352374	rs11639147	A	G	1674.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	62456358	rs8040712	A	C	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	62456945	rs8025811	G	A	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr15	62535030	rs1996469	G	A	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,27:0.33:81
chr15	62535864	rs11635709	T	C	8368.77	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:195,372:0.66:567
chr15	62539151	rs7402021	T	C	10179.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr15	62539153	rs59880159	T	TGG	7133.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,223:0.99:225
chr15	62539162	rs2955803	A	C	11805.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	62539185	rs2945418	T	C	11426.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;MQ=55.45;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr15	62539781	rs2611797	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:89,42:0.32:131
chr15	62539894	rs17271570	A	G	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr15	62936830	rs11852582	C	T	2926.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	62939440	rs938979	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	62944448	rs10775179	G	C	710.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	62967342	rs1878785	A	G	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr15	62967395	rs1878784	C	T	6383.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr15	62967554	rs1878783	T	C	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	62979016	rs12917611	A	C	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	62989775	rs8034474	T	C	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	62991210	rs9630428	C	T	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	62993464	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.66;ReadPosRankSum=0.872;SOR=0.332;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chr15	62994428	rs12594220	G	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	63000620	rs116926722	C	G	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr15	63009733	rs938983	A	G	5749.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr15	63009804	rs1320191	C	T	9064.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr15	63014548	rs10775181	A	G	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,178:0.99:180
chr15	63030398	rs12900862	T	C	8053.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr15	63044379	rs7171264	A	G	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	63044637	rs7176359	A	G	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	63047778	rs8033767	C	T	10383.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr15	63055658	rs10152548	T	A	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	63063141	rs34815657	C	CT	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=-1.231;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:92,22:0.19:114
chr15	63075918	rs111436593	CTCTGTGTG	CTG,C	2571.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=67;set=Intersection	GT:AF:DP	1/1:1.00:65
chr15	63340469	rs140483658	C	G	4795.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:91,223:0.71:314
chr15	63340647	rs4374117	A	G	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	63341238	rs66793829	G	C	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr15	63349132	rs28485524	T	A	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:99,170:0.63:269
chr15	63351687	rs4775614	A	G	1226.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:29,51:0.64:80
chr15	63351928	rs374265438	A	G	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr15	63353760	rs4774472	C	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,68:0.67:102
chr15	63355092	rs12442826	C	G	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:31,54:0.64:85
chr15	63356181	rs28660606	G	A	6501.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:171,303:0.64:474
chr15	63363401	rs201620283	C	CATTTT	1420.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:18,41:0.69:59
chr15	63413997	rs8182083	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	63414083	rs34317102	A	C	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:31,64:0.67:95
chr15	63414723	rs189796619	TGG	CTC	1762.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr15	63433766	rs2729835	G	A	4417.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:147,202:0.58:349
chr15	63433870	rs372475477	G	A	1672.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:180,85:0.32:265
chr15	63434110	rs8468	C	T	483.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr15	63449543	rs7170846	A	C	6057.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:138,271:0.66:409
chr15	63449680	rs2292038	C	G	6325.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:182,291:0.62:473
chr15	63515946	rs11632192	A	G	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr15	63516033	rs8032533	G	A	480.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr15	63516266	rs17828874	G	C	1239.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:22,50:0.69:72
chr15	63547859	rs3784673	G	C	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-0.437;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:35,31:0.47:66
chr15	63554824	.	GTA	ATA	249	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000,0.5000;HP=2;HapScore=4;MGOF=1;MMLQ=24;MQ=60.0;NF=2,2;NR=1,1;PP=70,249;QD=34.9237375157;SC=ATATATATGTGTATATATATA;SbPval=0.63;Source=Platypus;TC=14;TCF=10;TCR=4;TR=3,3;WE=63554833;WS=63554814;set=Platypus	GT:AD:AF:DP	0/1:11,3:0.21:14
chr15	63554824	rs72363505	GTA	G	266.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr15	63570441	rs11359006	GA	G	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.024;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:30,20:0.40:50
chr15	63639016	rs2270764	A	G	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr15	63668010	rs200331670	CT	C	85.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=-1.107;QD=3.06;ReadPosRankSum=1.226;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr15	63829538	rs11853890	A	G	1162.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:17,48:0.74:65
chr15	63848805	rs3751043	C	G	2564.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	63866708	rs74018128	G	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chr15	63889934	rs8035931	G	C	1553.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,68:0.67:101
chr15	63907940	rs7178853	T	C	2275.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:77,101:0.57:178
chr15	63921152	rs35700814	CT	C	254.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.154;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.58;ReadPosRankSum=0.245;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:3,19:0.86:22
chr15	63922752	rs10851731	T	A	11090.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr15	63929232	rs8030077	T	A	2016.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:77,94:0.55:171
chr15	63929599	rs71131175	GAT	G	927.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,25:0.47:53
chr15	63930798	rs80088271	G	A	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:96,167:0.63:263
chr15	63932513	rs2228517	G	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:170,77:0.31:247
chr15	63935030	rs76285931	G	A	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr15	63935149	rs10519223	A	G	1900.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:212,109:0.34:321
chr15	63937209	rs2229749	C	G	14919.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr15	63937657	rs8029051	G	T	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:64,136:0.68:200
chr15	63953153	rs2272209	A	G	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,156:0.99:157
chr15	63954029	rs2228511	C	T	7948.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr15	63958762	rs1815130	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	63966513	rs111577041	CA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=1.295;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:122,35:0.22:157
chr15	63970440	rs199985740	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:181,73:0.29:254
chr15	63970456	rs2228510	T	C	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.057;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:159,64:0.29:223
chr15	63984772	rs11630720	T	C	1629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.437;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=0.703;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:166,96:0.37:262
chr15	63988357	rs2255243	C	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	63998863	rs17186968	T	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr15	63998914	rs34366173	CTT	C	357.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.214;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=-0.073;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,18:0.45:40
chr15	64005722	rs61749474	A	G	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:83,122:0.60:205
chr15	64011104	rs7176133	T	C	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:46,93:0.67:139
chr15	64017798	rs11632718	A	G	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr15	64019758	rs113752258	T	TA	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr15	64020073	rs9920746	C	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	64021476	rs61740450	T	G	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:185,98:0.35:283
chr15	64039005	rs74321359	G	A	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr15	64039050	rs8034675	T	C	257.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:38,16:0.30:54
chr15	64039879	rs11631436	G	A	1254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.841;QD=7.89;ReadPosRankSum=-0.365;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:92,67:0.42:159
chr15	64048990	rs2271241	T	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr15	64050300	rs12912999	G	A	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	64056437	rs3764186	T	C	1886.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:122,90:0.42:212
chr15	64214954	rs920762	G	C	3565.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	64214993	rs920761	G	C	2085.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:45,96:0.68:141
chr15	64215375	rs4776669	G	C	10712.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr15	64231578	.	G	GA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.090;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.877;QD=1.11;ReadPosRankSum=-0.970;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:82,21:0.20:103
chr15	64263532	rs6494457	C	A	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:116,68:0.37:184
chr15	64263784	rs7180050	G	A	604.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:55,29:0.35:84
chr15	64263795	rs7180057	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr15	64275645	rs55986634	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:67,28:0.29:95
chr15	64283625	rs7168753	T	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	64365340	rs4622459	C	T	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	64367775	rs332234	T	C	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	64385851	rs332259	T	C	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	64404958	rs376284102	CA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=3.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.435;SOR=0.323;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr15	64407762	rs5813279	CT	C	102.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.792;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.27;ReadPosRankSum=-0.366;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:1,9:0.90:10
chr15	64410484	rs2290117	G	T	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	64418221	rs2290119	C	G	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	64418397	rs1130603	G	A	5371.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	64418483	rs2290121	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	64428657	rs2290122	G	A	6611.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr15	64428860	rs117752476	C	G	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr15	64445681	rs34975001	GC	G	3358.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	64448365	rs2253557	C	T	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	64496611	.	TA	T	236.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.432;QD=2.79;ReadPosRankSum=-0.593;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:49,36:0.42:85
chr15	64558267	.	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=0.858;QD=0.81;ReadPosRankSum=1.794;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:34,9:0.21:43
chr15	64675313	rs11635527	C	T	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	64679594	rs112815338	A	T	3909.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.78;ReadPosRankSum=0.099;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:2,144:0.99:146
chr15	64693149	rs11380356	G	GT	1273.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=23.16;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	64706259	rs2046356	G	A	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr15	64710827	rs4776494	T	C	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr15	64737103	rs7167394	G	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	64737225	rs7167612	G	A	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	64742670	rs7172012	T	A	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	64915106	rs525878	C	T	10931.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr15	64962630	rs11633399	A	C	6711.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:185,322:0.64:507
chr15	64972760	.	TTGTGTGTGTGTG	T	1140.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,30:0.71:42
chr15	64973611	rs11631564	G	A	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.71;ReadPosRankSum=2.204;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:33,89:0.73:122
chr15	65033311	rs6494489	C	T	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chr15	65040928	rs12911708	C	T	1873.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr15	65041622	rs6494493	C	A	7958.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr15	65054562	rs57945504	T	TG	6575.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr15	65054571	rs71133474	A	AG	7653.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	65107804	rs74935506	G	T	1619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.86;ReadPosRankSum=-0.710;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:41,68:0.62:109
chr15	65108504	rs17802279	A	T	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:37,98:0.73:135
chr15	65108652	rs6494498	T	C	3365.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:82,156:0.66:238
chr15	65108707	rs7180207	G	C	2293.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:59,96:0.62:155
chr15	65110034	rs5024311	G	T	5660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.766;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.518;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.888;QD=25.61;ReadPosRankSum=0.378;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:80,141:0.64:221
chr15	65110039	rs5024312	C	T	5794.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.830;QD=24.25;ReadPosRankSum=1.315;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:90,149:0.62:239
chr15	65110362	rs56057073	G	C	3368.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:76,136:0.64:212
chr15	65110391	rs55945924	C	T	4766.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:99,191:0.66:290
chr15	65113764	rs56305637	CTTTT	C	1794.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;QD=30.42;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:1,58:0.98:59
chr15	65114363	rs55736601	G	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:43,80:0.65:123
chr15	65116328	rs12899195	A	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	65116595	rs55675018	G	A	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr15	65157874	rs141176661	G	A	4805.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:117,207:0.64:324
chr15	65208227	rs1471834	G	A	3415.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	65209880	rs2056497	A	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	65222875	rs7168400	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	65234869	rs78415947	CT	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.603;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:115,47:0.29:162
chr15	65268979	rs4776255	C	G	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	65273147	.	T	TA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.128;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr15	65273399	rs4776659	T	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	65275609	rs111408068	T	TATAA	565.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=0.861;QD=23.57;ReadPosRankSum=-1.432;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:9,15:0.62:24
chr15	65298672	rs4776660	G	A	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	65308981	rs12912782	T	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:31,68:0.69:99
chr15	65312614	rs60772880	C	CA	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.602;QD=1.69;ReadPosRankSum=1.409;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:81,26:0.24:107
chr15	65315961	rs4776661	T	C	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr15	65344035	rs2946676	G	A	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr15	65350743	rs2232759	C	G	3706.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:124,170:0.58:294
chr15	65350968	rs2232758	T	A	2867.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:63,125:0.66:188
chr15	65351484	rs7175752	C	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	65370353	rs2919360	T	C	17420.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr15	65449169	rs2946670	C	T	15517.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr15	65477364	.	AC	A	1402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.840;ClippingRankSum=0.000;DP=684;ExcessHet=3.0103;FS=11.468;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=2.060;QD=2.14;ReadPosRankSum=4.400;SOR=0.211;set=HC	GT:AD:AF:DP	0/1:534,120:0.18:654
chr15	65489688	rs2679117	T	C	33168.77	.	AC=2;AF=1.00;AN=2;DB;DP=1298;set=Intersection	GT:AD:AF:DP	1/1:3,1293:1.00:1296
chr15	65490901	rs2679118	T	C	12690.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr15	65494212	rs2073711	A	G	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	65495820	rs2072048	A	G	1999.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.55;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	65495827	rs2073707	A	G	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	65496475	rs2585035	T	G	1699.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	65496587	rs2585034	C	T	8155.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	65497849	rs2681038	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	65621138	rs11853777	G	A	1492.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:122,78:0.39:200
chr15	65621441	rs12907128	C	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:207,87:0.30:294
chr15	65621857	rs509652	T	C	7783.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr15	65624228	rs686739	G	C	22114.77	.	AC=2;AF=1.00;AN=2;DB;DP=838;set=Intersection	GT:AD:AF:DP	1/1:0,838:1.00:838
chr15	65667724	rs666623	A	G	2283.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	65676617	rs2292933	T	C	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.408;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.26;ReadPosRankSum=-3.545;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:308,148:0.32:456
chr15	65676726	rs33918653	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:153,93:0.38:246
chr15	65678141	rs7183130	A	T	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr15	65681801	rs11071841	G	A	1308.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:182,76:0.29:258
chr15	65685968	rs11638647	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr15	65688558	rs35517676	C	CT	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:69,36:0.34:105
chr15	65688791	rs66699194	T	G	1474.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:114,77:0.40:191
chr15	65688824	rs1550028	C	G	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr15	65693397	rs667436	T	C	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	65703625	rs34355056	C	G	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:142,53:0.27:195
chr15	65744267	rs377663509	TA	T	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.991;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=2.521;QD=2.49;ReadPosRankSum=0.475;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:66,41:0.38:107
chr15	65766399	rs8043478	C	T	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr15	65771121	rs72739494	T	C	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.436;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.21;ReadPosRankSum=0.582;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:87,48:0.36:135
chr15	65782451	rs60062953	A	AT	3110.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	65804213	rs352478	C	T	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	65804537	rs352477	A	T	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	65804986	rs9635366	G	A	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:53,125:0.70:178
chr15	65822823	rs422390	C	G	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	65856653	rs11539008	G	A	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:266,163:0.38:429
chr15	65874368	rs71139418	T	TA	778.73	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr15	65902922	rs6494529	G	A	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	65903398	rs4366668	G	A	22607.77	.	AC=2;AF=1.00;AN=2;DB;DP=873;set=Intersection	GT:AD:AF:DP	1/1:2,869:1.00:871
chr15	65916527	rs3743171	A	T	2841.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,131:0.65:203
chr15	65931908	rs111310111	A	ACTGAGGC	3349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.066;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=16.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=-0.381;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:230,94:0.29:324
chr15	65935195	rs12101597	C	G	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	65956602	rs57260104	TAAA	T	73.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:5,3:0.38:8
chr15	65959645	rs113627784	C	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr15	65959729	rs12591647	T	C	1518.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:33,67:0.67:100
chr15	65960195	rs6494531	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	65994034	rs16948954	T	C	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr15	65994602	rs28377658	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr15	65995082	rs16948959	C	G	255.53	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chr15	66007972	rs28687655	A	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,36:0.64:56
chr15	66011630	rs2060455	A	G	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	66020342	rs199942569	G	GT	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.666;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=-0.627;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr15	66023700	rs62014398	C	T	6129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.365;QD=13.93;ReadPosRankSum=-0.295;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:153,287:0.65:440
chr15	66023799	rs28556680	G	T	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr15	66025010	rs11071849	G	A	615.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	66025275	rs1435126	C	T	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.64;ReadPosRankSum=1.300;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chr15	66030364	rs60590903	T	C	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:19,32:0.63:51
chr15	66044604	rs8033741	A	T	161.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	66161723	rs12909265	G	C	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:60,29:0.33:89
chr15	66257236	rs36088570	C	CA	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	66257408	rs333550	T	C	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	66274690	rs551474	T	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	66386853	rs7168565	G	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:83,100:0.55:183
chr15	66599125	rs138547783	T	A	3233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.951;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=4.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=-0.310;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:70,149:0.68:219
chr15	66601254	rs8025589	G	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:16,37:0.70:53
chr15	66604032	rs28616181	C	T	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr15	66606225	.	GTA	G	52.73	.	AC=1;AF=0.500;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr15	66612818	rs750295	A	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr15	66612965	rs17851970	T	C	1674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.385;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=-0.302;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:213,103:0.33:316
chr15	66618342	rs3803412	A	G	5290.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:135,237:0.64:372
chr15	66629666	rs28537939	C	A	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr15	66639715	rs199791828	C	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:116,59:0.34:175
chr15	66641308	rs147907907	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=-2.284;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr15	66644521	rs9806123	C	G	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	66645341	rs28614039	A	G	900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.551;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=-2.029;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:32,45:0.58:77
chr15	66694431	rs16949879	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	66727597	rs16949924	G	C	1611.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr15	66727689	rs368099654	A	ATT	223.76	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr15	66729250	rs16949939	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:231,93:0.29:324
chr15	66735551	rs6494573	C	T	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	66745890	rs7169326	G	A	3462.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	66792761	rs28706938	A	G	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr15	66793480	rs11071895	C	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	66793677	rs12101954	G	C	1679.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:50,75:0.60:125
chr15	66793795	rs146070182	G	A	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.278;QD=8.94;ReadPosRankSum=1.414;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:52,41:0.44:93
chr15	66795937	rs28673176	C	T	2108.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:47,95:0.67:142
chr15	66795980	rs8043062	A	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	66796911	rs139436991	GC	G	963.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr15	66806308	rs4238406	C	T	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	66806517	rs4420479	G	A	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	66816183	rs6494579	C	G	317.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	66820455	rs8033122	T	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr15	66821174	rs6494580	G	C	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	66821250	rs11071896	A	G	1271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.204;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-0.011;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:195,80:0.29:275
chr15	66824526	rs4488397	A	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr15	66857434	rs140244065	A	AC	372.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:26,14:0.35:40
chr15	66874670	rs8041988	C	T	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.329;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:89,120:0.57:209
chr15	66956824	rs7178388	A	T	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	66976149	rs2414910	G	T	230.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	67003841	rs2245159	C	T	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr15	67008737	rs2278604	C	A	6143.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr15	67224274	rs4776331	A	G	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	67234251	rs266383	A	G	10753.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:2,409:1.00:411
chr15	67358478	rs1061427	G	A	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.539;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=6.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.017;SOR=1.675;set=HC	GT:AD:AF:DP	0/1:40,17:0.30:57
chr15	67391394	rs5813427	GT	G	4128.73	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	67391497	rs1866319	C	A	651.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;MQ=60.47;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	67430223	rs1866318	T	C	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	67435075	rs745103	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	67457335	rs1065080	A	G	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr15	67457480	rs200305159	T	TC	3202.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:78,123:0.61:201
chr15	67457485	rs2289261	G	C	8570.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	67457698	rs35874463	A	G	8023.77	.	AC=1;AF=0.500;AN=2;DB;DP=1259;set=Intersection	GT:AD:AF:DP	0/1:800,457:0.36:1257
chr15	67476952	rs2289791	G	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	67476970	rs2289790	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr15	67495298	rs151320450	T	C	3433.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:92,152:0.62:244
chr15	67501033	rs2289262	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr15	67528374	rs7173826	T	G	7589.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	0/1:231,356:0.61:587
chr15	67547301	rs3743347	C	A	9734.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:250,449:0.64:699
chr15	67596815	rs10438290	T	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr15	67652097	rs3743349	G	C	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr15	67692502	rs7495023	T	C	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,351:1.00:351
chr15	67768151	rs3985641	G	C	3947.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	67782440	rs10574862	AGGAAAT	A	5961.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	67872983	rs7172298	T	C	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:12,5:0.29:17
chr15	67879418	rs28730805	G	A	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:9,7:0.44:16
chr15	67885058	rs28637534	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	67951150	rs12438118	G	T	11060.77	.	AC=1;AF=0.500;AN=2;DB;DP=792;set=Intersection	GT:AD:AF:DP	0/1:273,512:0.65:785
chr15	67951228	rs5813451	GA	G	5067.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:5,237:0.98:242
chr15	67962763	rs35395156	A	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr15	67984705	rs4343227	G	A	5895.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	67985720	rs66548496	TA	T	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr15	67985931	rs8034680	T	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	68041070	rs8037011	A	G	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	68116010	rs28399056	C	A	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr15	68116400	rs28675295	C	A	4823.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:101,197:0.66:298
chr15	68117156	rs146830880	G	A	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:171,79:0.32:250
chr15	68117300	rs7170185	T	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:57,88:0.61:145
chr15	68118194	rs4776984	A	C	2188.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:56,96:0.63:152
chr15	68121428	rs28539889	T	A	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr15	68121483	rs7183168	A	C	2640.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:72,121:0.63:193
chr15	68122509	rs28587941	T	C	3876.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:81,171:0.68:252
chr15	68124665	rs72751453	C	A	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:166,80:0.33:246
chr15	68346549	rs11855475	T	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	68445912	rs11633620	T	A	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	68468695	rs12438361	T	C	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	68503513	.	A	G	986.77	.	AC=1;AF=0.500;AN=2;DP=161;set=Intersection	GT:AD:AF:DP	0/1:109,51:0.32:160
chr15	68522105	.	A	AGCGGAGCGGAGGGAGGCGGG	380.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=34.61;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	68583175	rs6494729	T	C	12524.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr15	68603625	rs898591	C	T	3999.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	68605067	rs4776394	A	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	68605169	rs4777035	G	A	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	68609833	rs1516871	T	C	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	68612385	rs35808090	C	A	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	68617749	rs5813482	TG	T	786.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr15	68618961	rs2271722	T	C	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	68624175	rs7167822	C	T	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	68624290	rs2292745	G	A	1979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=364;ExcessHet=3.0103;FS=5.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.459;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:244,119:0.33:363
chr15	68624396	rs7168069	A	C	5145.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	68624641	rs6494733	A	C	18571.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:1,698:1.00:699
chr15	68628143	rs2306023	C	T	13609.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr15	68631740	rs2125998	A	G	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	68641362	rs61119953	AG	A	2663.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	68649587	rs12907890	G	A	8050.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr15	68656864	rs2306013	A	G	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	68656960	rs2306012	A	G	4730.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	68695448	rs4777049	T	C	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr15	68724262	rs2305078	G	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr15	68987315	rs11072043	A	C	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	68987341	rs7359311	A	G	1913.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	69003871	rs3736272	G	T	3696.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=1.256;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	69007656	rs1542746	T	G	14481.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr15	69011389	rs1491640	A	C	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.11;SOR=1.398;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr15	69011394	rs1491639	C	T	8325.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.48;SOR=1.435;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	69112946	rs4777089	C	A	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:3,46:0.94:49
chr15	69112971	rs35802209	G	GCA	3961.73	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:22,138:0.86:160
chr15	69238445	rs3743093	G	A	6325.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:167,279:0.63:446
chr15	69307022	rs1500551	AG	CC	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;JOINED;set=Intersection	GT:AD:AF:DP	0/1:136,68:0.33:204
chr15	69325581	rs311893	C	T	11218.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr15	69327825	rs311889	C	T	10368.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr15	69328226	rs12907196	C	T	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:109,149:0.58:258
chr15	69329623	rs34924807	G	A	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.65;ReadPosRankSum=0.524;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:28,46:0.62:74
chr15	69329623	.	GA	AG	582	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=4;MMLQ=26;MQ=60.0;NF=13;NR=25;PP=582;QD=16.7228388122;SC=GGAGCAGCTGGATACCCTGTC;SbPval=0.5;Source=Platypus;TC=67;TCF=22;TCR=45;TR=38;WE=69329632;WS=69329613;set=Platypus	GT:AD:AF:DP	1/0:29,38:0.57:67
chr15	69329624	rs2246273	A	G	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.45;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	69347593	rs311905	G	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	69349087	rs311906	T	C	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	69561518	rs3865014	G	A	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr15	69676892	.	A	G	727	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=1;MGOF=17;MMLQ=23;MQ=56.08;NF=33;NR=4;PP=727;QD=20.5884111499;SC=CGTGTTCATCATGGAGGGTGA;SbPval=0.56;Source=Platypus;TC=37;TCF=33;TCR=4;TR=37;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	69676904	.	C	T	965	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=4;HapScore=1;MGOF=17;MMLQ=27;MQ=57.32;NF=38;NR=11;PP=965;QD=20.4034941336;SC=GGAGGGTGAGCGGGCCCTCCG;SbPval=0.66;Source=Platypus;TC=52;TCF=39;TCR=13;TR=49;WE=69676912;WS=69676882;set=Platypus	GT:AD:AF:DP	1/1:3,49:0.94:52
chr15	69676944	.	T	C	2299	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=23;MQ=59.63;NF=86;NR=42;PP=2299;QD=18.232587598;SC=GCGGGTCCTCTGTGTTCATGG;SbPval=0.54;Source=Platypus;TC=128;TCF=86;TCR=42;TR=128;WE=69676952;WS=69676934;set=Platypus	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	69683945	rs2242464	C	G	7017.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr15	69684376	rs7183388	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	69684389	rs11634798	A	T	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	69684477	rs58280155	T	A	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	69684481	rs112633523	AT	A	1573.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	69684507	rs11634850	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	69709686	rs3759825	G	A	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	69714638	.	AT	A	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.839;QD=1.19;ReadPosRankSum=1.995;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:76,25:0.25:101
chr15	69715488	rs7180624	C	T	119.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.812;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.33;ReadPosRankSum=-0.282;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr15	69728949	rs3825858	A	G	11245.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,449:1.00:449
chr15	69732483	rs4776448	G	A	4191.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	69732736	rs937724	C	T	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	69740350	rs13613	A	G	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr15	69747675	rs1463911	A	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	69754221	rs8041861	T	C	15063.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr15	69857737	rs16953470	A	G	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:70,128:0.65:198
chr15	70345626	rs1057865	C	T	6994.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr15	70346923	rs2228178	C	T	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	70347362	rs4777227	C	A	3893.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr15	70347816	rs11440222	A	AG	1668.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	70348523	rs2270871	G	C	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	70349744	rs8036209	T	C	4390.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr15	70351649	rs7176098	C	A	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	70351788	rs2133977	T	C	10523.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:2,405:1.00:407
chr15	70368571	rs3830411	A	ATGC	1483.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,44:0.31:141
chr15	70371571	rs12901770	A	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr15	70387560	rs12441129	A	C	1479.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:20,58:0.74:78
chr15	70388449	rs71149952	AG	A	6668.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	70958937	rs2241530	G	A	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.20;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	70960068	rs934005	G	A	8191.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr15	70971741	rs143519196	C	CTAAATAAA	590.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	70991925	rs4776525	G	C	17413.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,684:1.00:684
chr15	71125093	rs3825970	G	A	5139.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	71125204	rs1549317	A	G	3117.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	71175296	rs1528828	A	G	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	71186811	rs1881568	C	G	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	71190616	rs139411761	A	G	424.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	71193188	rs3830648	A	AAT	394.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	71535458	rs12440013	G	C	3914.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	71952772	rs62024297	C	A	456.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	71953045	rs62024298	G	A	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	72023422	rs2277540	C	T	7554.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr15	72037610	rs2291994	G	A	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	72050163	rs2625533	C	G	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	72057578	rs12442377	A	G	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	72103795	rs2742318	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	72104364	rs1805020	A	G	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr15	72104433	rs1805021	T	C	7445.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr15	72105928	rs11351249	AC	A	7542.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr15	72172883	rs2306575	G	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	72231107	rs148310735	CA	C	377.73	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	72252189	rs5813671	T	TA	253.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-0.024;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:19,20:0.51:39
chr15	72432583	rs930871	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr15	72454729	rs897731	C	G	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	72457551	rs2959944	A	G	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	72462165	rs11072348	A	C	1978.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=1.240;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	72462831	rs7182776	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	72543656	rs2959904	T	C	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	72545857	rs3803388	T	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	72545876	rs1426166	T	C	1818.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	72546765	rs2912227	A	G	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	72556799	rs11072352	G	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr15	72557955	rs1426170	T	C	302.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	72637599	rs10468051	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	72637795	rs4777502	T	C	9670.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr15	72637960	rs2288259	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	72638712	rs2303448	C	T	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	72638892	rs1800431	T	C	2964.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	72640193	rs2303449	G	T	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	72640226	rs2303450	T	A	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	72640563	rs74949863	C	T	4835.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr15	72645352	rs12440768	C	T	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	72648053	.	T	TA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.380;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.579;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:43,12:0.22:55
chr15	72668305	rs1800428	G	A	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr15	72690857	rs200172705	GT	G	517.94	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:5,36:0.88:41
chr15	72859047	rs11403578	A	AT	173.74	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	72864578	rs34776818	ATT	A	1343.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.732;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.578;QD=21.00;ReadPosRankSum=-0.597;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:10,54:0.84:64
chr15	72872994	rs76844811	G	A	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	72875521	.	G	GT	481.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.907;ClippingRankSum=0.000;DP=265;ExcessHet=3.0103;FS=4.262;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=1.85;ReadPosRankSum=-0.581;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:196,64:0.25:260
chr15	72879653	rs139334001	A	ATTG	3896.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	72968748	.	G	GT	624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.706;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=3.568;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.306;QD=4.14;ReadPosRankSum=-0.011;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:88,63:0.42:151
chr15	72978531	rs11637927	C	A	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	72987588	rs4777527	G	T	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	73002035	rs8033604	G	A	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	73021855	rs6495015	T	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	73023937	rs12914333	T	C	12797.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr15	73024181	rs9806635	G	A	2298.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	73027478	rs2277598	T	C	3969.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr15	73028375	rs12324395	G	A	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	73044575	rs9460	G	A	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	73067234	rs11634630	T	C	11180.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr15	73409213	rs3840037	A	AT	1211.80	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:13,69:0.84:82
chr15	73418741	.	AT	A	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.018;ClippingRankSum=0.000;DP=213;ExcessHet=3.0103;FS=3.646;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.042;QD=0.68;ReadPosRankSum=1.905;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:162,47:0.22:209
chr15	73428204	rs376822156	CT	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.849;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.530;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.291;QD=3.17;ReadPosRankSum=1.800;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:38,31:0.45:69
chr15	73428224	rs8035499	T	A	1324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=4.178;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.426;QD=9.81;ReadPosRankSum=3.946;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:62,73:0.54:135
chr15	73545732	rs2623989	T	C	1088.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,61:0.45:137
chr15	73562532	rs2680348	C	T	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:335,272:0.45:607
chr15	73566942	rs497539	G	A	6133.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:275,293:0.52:568
chr15	73567137	rs201909530	CT	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.966;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.440;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.304;QD=3.30;ReadPosRankSum=-2.197;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:59,47:0.44:106
chr15	73581444	rs489531	A	G	2242.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:120,114:0.49:234
chr15	73614834	rs529004	T	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:75,84:0.53:159
chr15	73616635	rs481579	T	C	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:129,102:0.44:231
chr15	73766072	rs8023326	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:12,7:0.37:19
chr15	73848808	rs922687	A	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	73852298	rs141729178	GA	G	65.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr15	73855330	rs200404677	G	GA	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=-0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.674;QD=3.89;ReadPosRankSum=-0.053;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr15	73982965	rs6495076	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:39,49:0.56:88
chr15	73994806	rs7173448	C	T	1977.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:79,83:0.51:162
chr15	73994847	rs7173476	C	A	2159.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:80,94:0.54:174
chr15	73995165	rs111801073	A	C	6460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=53.08;MQRankSum=-1.287;QD=19.70;ReadPosRankSum=0.296;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:152,176:0.54:328
chr15	73995173	rs11574479	C	T	6135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.353;MLEAC=1;MLEAF=0.500;MQ=52.62;MQRankSum=-1.957;QD=19.92;ReadPosRankSum=1.443;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:150,158:0.51:308
chr15	73995431	rs11574480	G	T	9217.77	.	AC=1;AF=0.500;AN=2;DB;DP=979;set=Intersection	GT:AD:AF:DP	0/1:519,459:0.47:978
chr15	73995588	rs10152662	G	A	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr15	73995603	rs10152645	A	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:38,35:0.48:73
chr15	73996066	rs11574483	G	A	9184.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:430,450:0.51:880
chr15	73996101	rs10083681	G	A	7335.77	.	AC=1;AF=0.500;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	0/1:315,348:0.52:663
chr15	73996359	rs2291014	G	A	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:90,96:0.52:186
chr15	73996590	rs143255170	G	A	2853.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:131,136:0.51:267
chr15	74000729	rs2291012	G	C	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:97,90:0.48:187
chr15	74001993	rs11552770	T	C	695.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:49,38:0.44:87
chr15	74002006	rs3825859	G	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.46;ReadPosRankSum=-2.105;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:53,39:0.42:92
chr15	74003533	rs966378	G	A	3065.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:134,146:0.52:280
chr15	74032179	.	AAT	A	164	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=2;HapScore=3;MGOF=29;MMLQ=21;MQ=60.0;NF=3;NR=3;PP=164;QD=27.8333333333;SC=CATTTGTTTAAATATATATAT;SbPval=0.43;Source=Platypus;TC=13;TCF=8;TCR=5;TR=6;WE=74032190;WS=74032174;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	74032234	rs11857595	C	T	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr15	74032783	rs28594180	A	G	6415.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:358,313:0.47:671
chr15	74033033	rs11858458	A	G	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	74043523	rs7497362	A	G	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	74176453	rs66619071	GA	G	8271.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr15	74178966	rs62007098	G	A	5165.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr15	74179024	rs62007099	C	A	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	74181255	rs7170803	A	G	2411.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	74234059	.	G	A	886.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr15	74234082	rs11638944	C	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	74234171	rs8042181	A	G	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	74240346	.	C	G	5947.77	.	AC=1;AF=0.500;AN=2;DP=556;set=Intersection	GT:AD:AF:DP	0/1:276,280:0.50:556
chr15	74244278	rs8818	C	G	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	74277795	rs10851866	T	C	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr15	74284406	rs2304715	C	G	2565.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:114,114:0.50:228
chr15	74317043	rs2277599	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr15	74317362	rs3825941	G	A	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,19:0.45:42
chr15	74325182	rs2304716	A	G	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr15	74326711	rs2304718	G	A	1392.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:59,66:0.53:125
chr15	74328116	rs743580	A	G	13153.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:376,392:0.51:768
chr15	74328141	rs743581	G	T	12053.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:336,329:0.49:665
chr15	74336633	rs5742915	T	C	14586.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr15	74421598	.	C	T	707.77	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr15	74466271	rs923118	G	T	506.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr15	74467796	rs11854957	C	T	12597.77	.	AC=1;AF=0.500;AN=2;DB;DP=1268;set=Intersection	GT:AD:AF:DP	0/1:663,604:0.48:1267
chr15	74467856	rs1052622	G	A	9466.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:430,439:0.51:869
chr15	74468494	rs3848160	C	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:93,81:0.47:174
chr15	74472522	rs145614612	C	T	6555.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:291,308:0.51:599
chr15	74472716	rs351242	G	A	2444.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:109,109:0.50:218
chr15	74473073	rs12912578	A	G	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr15	74473302	rs12913041	A	G	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:165,182:0.52:347
chr15	74477216	rs351238	G	A	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:43,44:0.51:87
chr15	74477239	rs351237	G	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:63,68:0.52:131
chr15	74483415	rs351228	T	C	8842.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr15	74486444	rs974456	C	T	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:102,124:0.55:226
chr15	74487846	rs971757	G	A	5367.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:247,254:0.51:501
chr15	74487969	rs971756	A	T	6126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;ClippingRankSum=0.000;DB;DP=575;ExcessHet=3.0103;FS=3.201;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.77;ReadPosRankSum=0.495;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:277,292:0.51:569
chr15	74488238	rs35255788	T	C	510.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,20:0.69:29
chr15	74488252	rs34147822	T	C	642.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr15	74488424	rs11857410	G	A	2653.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:135,128:0.49:263
chr15	74489883	rs351218	A	G	1717.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	74494388	rs12912258	C	T	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:50,59:0.54:109
chr15	74494684	rs34975666	GA	G	4070.73	.	AC=1;AF=0.500;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	0/1:256,256:0.50:512
chr15	74499956	rs351222	G	C	5593.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830;ClippingRankSum=0.000;DB;DP=559;ExcessHet=3.0103;FS=0.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.542;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:275,281:0.51:556
chr15	74528985	rs351175	T	G	978.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,43:0.52:82
chr15	74529130	rs11633321	T	G	1338.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:60,65:0.52:125
chr15	74536285	rs67845844	CA	C	711.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.564;QD=9.88;ReadPosRankSum=-0.286;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:16,56:0.78:72
chr15	74536400	rs10552820	TAAG	T	5125.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:148,135:0.48:283
chr15	74558927	rs440793	A	G	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	74560566	rs1038436	C	T	8649.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr15	74572242	rs351165	T	A	3424.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	74572917	rs351164	A	G	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	74588024	rs1484212	T	C	735.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:40,34:0.46:74
chr15	74611182	rs751528	A	G	833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.168;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=0.397;SOR=0.126;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr15	74611189	rs751527	T	C	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.233;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=2.280;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.26;ReadPosRankSum=-1.221;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr15	74622365	rs2277601	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr15	74622457	rs2277602	A	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:41,36:0.47:77
chr15	74622678	rs1564782	G	A	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr15	74623272	rs2277605	G	A	4142.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:213,204:0.49:417
chr15	74623302	rs2277606	T	C	5355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=2.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=-1.359;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:238,257:0.52:495
chr15	74627222	rs2279356	G	T	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:41,53:0.56:94
chr15	74628242	rs900802	C	T	4349.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:181,206:0.53:387
chr15	74628891	rs2959003	A	G	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:37,38:0.51:75
chr15	74703022	rs2075592	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:87,69:0.44:156
chr15	74703929	rs741761	T	C	1923.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:107,91:0.46:198
chr15	74706943	rs1046146	G	A	3957.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:170,184:0.52:354
chr15	74710593	rs28362912	C	T	14875.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr15	74750978	.	C	G	260.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr15	74883323	rs62005806	G	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr15	75041917	rs762551	C	A	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	75044238	rs2472304	G	A	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	75047426	rs2470890	C	T	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	75080872	rs2168519	T	C	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	75081078	rs2168518	G	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	75112974	rs148169854	A	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,61:0.61:100
chr15	75114322	rs11636952	T	C	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	75115895	rs7162232	G	A	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr15	75129594	rs2290573	G	A	8710.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr15	75130015	rs11312224	AG	A	5290.73	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:216,215:0.50:431
chr15	75130093	rs12898397	T	C	16062.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=26.25;SOR=0.810;set=HC	GT:AD:AF:DP	1/1:0,612:1.00:612
chr15	75130573	rs2290572	A	G	3313.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	75131661	rs4886615	A	G	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr15	75131959	rs936227	A	G	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	75132490	rs12908814	C	G	9822.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr15	75135447	rs2290574	T	C	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	75140854	rs3765066	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	75183935	rs11638130	G	A	5172.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr15	75185670	rs7495739	A	G	10511.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr15	75189930	rs1130741	A	G	12284.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr15	75230502	rs6495131	A	G	138.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	75305040	rs7174129	A	G	6010.77	.	AC=1;AF=0.500;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	0/1:383,317:0.45:700
chr15	75309170	rs371189916	CT	C	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.481;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:67,41:0.38:108
chr15	75310075	rs12593566	C	A	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	75310710	rs74023908	T	C	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr15	75336729	rs2304899	A	G	22591.77	.	AC=2;AF=1.00;AN=2;DB;DP=850;set=Intersection	GT:AD:AF:DP	1/1:0,848:1.00:848
chr15	75498548	rs1466663	A	G	16933.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr15	75498744	rs1873379	G	C	10763.77	.	AC=1;AF=0.500;AN=2;DB;DP=1005;set=Intersection	GT:AD:AF:DP	0/1:494,508:0.51:1002
chr15	75499602	rs12591506	C	A	27096.77	.	AC=2;AF=1.00;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	1/1:0,960:1.00:960
chr15	75499619	rs11072531	T	C	22942.77	.	AC=2;AF=1.00;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	1/1:0,866:1.00:866
chr15	75499861	rs11072532	G	A	23846.77	.	AC=2;AF=1.00;AN=2;DB;DP=909;set=Intersection	GT:AD:AF:DP	1/1:1,904:1.00:905
chr15	75499995	rs28509789	T	G	6112.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:347,304:0.47:651
chr15	75503147	rs3743211	G	A	10997.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr15	75518241	rs1994639	G	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.67;QD=43.74;SOR=1.284;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	75518246	rs1994640	A	G	1457.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.00;QD=42.88;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	75521833	rs6495165	G	C	6368.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	75594075	rs145348085	T	G	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.421;ClippingRankSum=0.000;DB;DP=380;ExcessHet=3.0103;FS=4.467;MLEAC=1;MLEAF=0.500;MQ=52.98;MQRankSum=2.723;QD=0.52;ReadPosRankSum=4.596;SOR=1.021;set=HC	GT:AD:AF:DP	0/1:332,48:0.13:380
chr15	75630562	rs143588533	C	T	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:164,156:0.49:320
chr15	75630635	rs7166436	A	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chr15	75640423	rs79244935	C	T	905.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=-1.439;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:48,47:0.49:95
chr15	75643714	rs11634109	T	C	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=1.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=-1.319;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:84,113:0.57:197
chr15	75643759	rs7182283	G	T	1618.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:117,87:0.43:204
chr15	75650836	rs1128933	G	A	6046.77	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:332,300:0.47:632
chr15	75650972	rs3809549	G	A	6506.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:281,310:0.52:591
chr15	75651022	rs149997575	C	CCCACATGCTGCCCAGCCCATA	24752.73	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr15	75651981	rs78610801	G	A	1968.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:132,101:0.43:233
chr15	75653378	rs7174408	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr15	75655765	rs34386653	G	GT	1472.73	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chr15	75660662	rs75458893	C	T	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:40,22:0.35:62
chr15	75664570	rs4886696	AA	TT	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=1.690;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	75702754	rs79147131	C	T	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr15	75870906	rs138732372	G	A	113.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr15	75890612	rs3210683	G	A	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr15	75890689	rs1128585	G	T	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:62,55:0.47:117
chr15	75897646	rs372246427	AT	A	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-1.012;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:35,35:0.50:70
chr15	75902469	rs76965612	G	T	1880.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:60,86:0.59:146
chr15	75909933	.	CT	C	187.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-1.307;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chr15	75913430	rs77935734	C	T	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:40,29:0.42:69
chr15	75916931	rs4886719	T	G	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.000;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=0.398;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:41,22:0.35:63
chr15	75916940	rs4886720	T	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.313;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.71;ReadPosRankSum=1.075;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:49,23:0.32:72
chr15	75916965	rs113978196	G	A	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=-1.557;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:63,38:0.38:101
chr15	75969335	rs77237106	C	T	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:59,46:0.44:105
chr15	75982072	rs77681934	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.139;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-13.635;QD=2.28;ReadPosRankSum=3.877;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:218,32:0.13:250
chr15	76017452	rs55905564	C	T	21839.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:0,804:1.00:804
chr15	76075437	rs62028907	G	A	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	76114318	rs35830282	GA	G	482.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=2.355;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.949;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:116,68:0.37:184
chr15	76136194	rs2047866	C	T	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr15	76136768	rs72734531	C	T	2129.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:92,102:0.53:194
chr15	76146886	rs189399214	T	G	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:45,52:0.54:97
chr15	76168406	rs66475371	C	CAA,CAAA	562.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.226;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.050;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=20.84;ReadPosRankSum=-0.515;SOR=2.066;set=HC	GT:AD:AF:DP	1/2:4,12,11:0.44,0.41:27
chr15	76175828	rs1868020	G	A	1222.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	76182949	rs335713	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	76189624	rs335692	A	G	940.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	76191644	rs28607641	A	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr15	76191802	rs335689	G	A	7922.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr15	76191852	rs335688	T	C	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr15	76191966	rs335687	T	C	1738.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	76197071	rs3073843	A	ATCT	2662.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	76222140	rs335679	G	T	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	76248427	rs10711025	GT	G	1148.94	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:10,70:0.88:80
chr15	76298132	rs4886755	A	G	1338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=8.11;ReadPosRankSum=-1.020;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:93,72:0.44:165
chr15	76508854	rs183981964	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chr15	76510073	rs1533600	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	76518346	rs11281932	C	CCCTTA	1265.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	76584686	rs3215000	T	TA	1020.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	76630303	rs4636879	T	C	15366.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr15	76632907	rs7180257	A	G	9434.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr15	76673627	rs17460201	T	C	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	76957958	rs280021	A	G	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	77064389	rs66496622	TGAA	T	1538.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	77085740	rs3102707	C	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	77231158	rs4886841	C	T	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	77241568	rs1711018	T	C	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr15	77288018	rs2254441	G	A	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:11,20:0.65:31
chr15	77308387	rs7173067	G	A	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:186,139:0.43:325
chr15	77310345	rs12900395	C	G	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:47,35:0.43:82
chr15	77310636	rs3812911	G	C	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:92,77:0.46:169
chr15	77322029	rs3935339	C	T	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:38,18:0.32:56
chr15	77323009	rs2469237	T	C	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	77323029	rs12903227	C	A	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:55,105:0.66:160
chr15	77323473	rs184445497	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:76,67:0.47:143
chr15	77324880	rs4078354	A	G	1992.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:150,99:0.40:249
chr15	77328108	rs11373069	G	GA	2264.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	77344793	rs11737	T	A	2696.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:242,142:0.37:384
chr15	77363451	rs11072641	T	C	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr15	77406396	rs3743479	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	77407114	rs1867780	C	G	2388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=1.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=-0.020;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:160,120:0.43:280
chr15	77425252	rs35381299	A	G	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr15	77450964	rs12909704	C	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:127,93:0.42:220
chr15	77472871	rs10519162	G	A	5583.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:192,254:0.57:446
chr15	77750749	rs61755713	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:165,110:0.40:275
chr15	77756457	rs34237392	T	A	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr15	77764053	rs17471809	G	C	279.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	77764227	rs34188762	AT	A	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.825;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr15	77771494	rs16968851	T	C	2362.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:80,110:0.58:190
chr15	78189075	rs4569232	G	A	2837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-0.420;QD=7.22;ReadPosRankSum=0.129;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:243,150:0.38:393
chr15	78189084	rs4243062	T	C	12964.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr15	78189206	rs4886959	C	T	2060.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:38,84:0.69:122
chr15	78189268	rs11630652	A	T	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:32,68:0.68:100
chr15	78189370	rs4441238	A	C	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	78196212	rs7178928	A	G	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	78207762	rs57642131	C	A	2028.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:42,56:0.57:98
chr15	78207864	rs66955965	C	A	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:76,56:0.42:132
chr15	78207914	rs67793790	T	C	1102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.498;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-1.257;QD=6.81;ReadPosRankSum=-1.069;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:100,62:0.38:162
chr15	78207974	rs71400903	T	C	1674.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:114,88:0.44:202
chr15	78208021	rs58158543	T	C	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:115,168:0.59:283
chr15	78208141	rs58331113	C	T	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:78,157:0.67:235
chr15	78208236	rs76380402	A	G	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=34.843;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-7.655;QD=8.84;ReadPosRankSum=-1.394;SOR=1.775;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr15	78208239	rs74587726	T	C	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=26.919;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-8.718;QD=8.82;ReadPosRankSum=-1.974;SOR=1.377;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr15	78211339	rs71400918	T	C	3004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-3.536;QD=21.77;ReadPosRankSum=-1.034;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:62,76:0.55:138
chr15	78211344	rs144363575	C	T	3110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-3.507;QD=21.60;ReadPosRankSum=-1.386;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:63,81:0.56:144
chr15	78211345	rs12592294	A	G	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr15	78211411	.	GCCTCCTGCTCTCGGAGCATCT	G	6376.73	.	AC=1;AF=0.500;AN=2;DP=357;set=Intersection	GT:AD:AF:DP	0/1:148,177:0.54:325
chr15	78211471	rs67630434	C	T	3479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.458;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-4.295;QD=12.12;ReadPosRankSum=0.193;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:120,167:0.58:287
chr15	78232240	rs12907147	G	C	7529.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;MQ=59.95;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr15	78268603	rs28360704	C	T	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:54,62:0.53:116
chr15	78268716	rs11072706	G	A	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:24,15:0.38:39
chr15	78269731	rs11852862	G	T	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.47;QD=43.34;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	78269737	rs11852790	A	T	2111.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.30;QD=44.93;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	78269738	rs11852821	C	T	2111.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.30;QD=44.93;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	78269747	rs11852867	G	A	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.55;QD=43.53;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	78269760	rs71402931	C	T	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.22;QD=43.88;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	78269762	rs78023616	C	T	1886.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.13;QD=44.92;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	78269763	rs75184028	A	G	1886.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.13;QD=44.92;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	78269793	rs67603081	CT	C	1205.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.35;QD=41.58;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	78269798	rs142983118	G	A	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.39;QD=46.72;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	78269801	rs140951103	G	A	1141.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.16;QD=45.67;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	78269802	rs143146370	T	TG	1087.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.16;QD=43.51;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	78272318	rs12439777	C	G	2981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;ClippingRankSum=0.000;DB;DP=599;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.19;MQRankSum=1.451;QD=4.99;ReadPosRankSum=-1.792;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:418,180:0.30:598
chr15	78272330	rs56081051	C	T	2419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.505;ClippingRankSum=0.000;DB;DP=656;ExcessHet=3.0103;FS=0.604;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-7.233;QD=3.71;ReadPosRankSum=4.704;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:486,166:0.25:652
chr15	78272478	rs58205250	G	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:120,67:0.36:187
chr15	78276594	rs72732526	AC	CA	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;JOINED;set=Intersection	GT:AD:AF:DP	0/1:43,45:0.51:88
chr15	78276660	rs12916320	A	G	3798.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	78317907	rs141368762	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,17:0.49:35
chr15	78337225	rs4886995	G	A	1442.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:124,76:0.38:200
chr15	78369815	rs9047	G	A	3168.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:105,145:0.58:250
chr15	78369959	rs113518553	G	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:27,39:0.59:66
chr15	78369972	rs7176425	G	C	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=7.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=1.889;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr15	78390414	rs2289524	T	C	8078.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:255,392:0.61:647
chr15	78390909	rs12593575	C	T	4945.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:209,238:0.53:447
chr15	78398146	rs10456	G	A	20726.77	.	AC=1;AF=0.500;AN=2;DB;DP=1552;set=Intersection	GT:AD:AF:DP	0/1:577,970:0.63:1547
chr15	78401540	.	AC	CC	475	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=7;HapScore=3;MGOF=6;MMLQ=23;MQ=60.0;NF=11,4;NR=1,3;PP=475,55;QD=45.4091673699;SC=ATGTTCCCCCACCGCATATTC;SbPval=0.88;Source=Platypus;TC=24;TCF=20;TCR=4;TR=12,7;WE=78401548;WS=78401530;set=Platypus	GT:AD:AF:DP	0/1:16,7:0.30:23
chr15	78401540	.	AC	ACCC	475	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=7;HapScore=3;MGOF=6;MMLQ=23;MQ=60.0;NF=11,4;NR=1,3;PP=475,55;QD=45.4091673699;SC=ATGTTCCCCCACCGCATATTC;SbPval=0.88;Source=Platypus;TC=24;TCF=20;TCR=4;TR=12,7;WE=78401548;WS=78401530;set=Platypus	GT:AD:AF:DP	0/1:12,12:0.50:24
chr15	78401540	rs12592068	A	C,ACC	750.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=37.54;SOR=3.056;set=HC	GT:AD:AF:DP	1/2:0,4,16:0.20,0.80:20
chr15	78402001	rs11072729	A	C	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr15	78403004	rs1992469	A	G	3968.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.60;ReadPosRankSum=-0.509;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,154:0.99:155
chr15	78403179	rs2867986	C	G	3154.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	78403213	rs148709604	ACAGGTCTGCCAACTACAG	A	1212.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr15	78423433	rs112308337	G	A	3077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.12;ReadPosRankSum=1.374;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:106,148:0.58:254
chr15	78423479	rs8040395	T	C	5350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=1.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.92;ReadPosRankSum=0.634;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:190,259:0.58:449
chr15	78423596	rs11547207	A	C	6486.77	.	AC=1;AF=0.500;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	0/1:208,297:0.59:505
chr15	78441769	rs11555541	T	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.280;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=0.388;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr15	78457242	rs12904700	A	G	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,13:0.28:47
chr15	78457537	rs11394499	C	CT	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-0.583;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr15	78458485	rs3816253	T	C	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:62,63:0.50:125
chr15	78458797	rs2304825	C	T	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:29,31:0.52:60
chr15	78461457	rs17674205	A	G	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:11,21:0.66:32
chr15	78463890	rs11638547	G	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:102,56:0.35:158
chr15	78466127	rs2304824	T	C	1931.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:117,95:0.45:212
chr15	78466597	rs11631653	C	T	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr15	78472157	rs370177754	TCA	T	505.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=56.19;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:1,8:0.89:9
chr15	78472186	rs58092270	T	C	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr15	78473309	rs12915634	G	A	2327.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:156,106:0.40:262
chr15	78474517	rs6495277	T	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr15	78474776	rs66983917	AC	A	4540.73	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:222,198:0.47:420
chr15	78504780	rs10706612	GA	G	1741.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:75,96:0.56:171
chr15	78518951	.	C	CA	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.510;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr15	78526556	rs10162606	C	T	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr15	78556580	rs200375873	GGGGGCGGCCTC	G	893.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr15	78557005	rs28484827	A	G	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:33,54:0.62:87
chr15	78557086	rs66489434	GC	G	10558.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;ClippingRankSum=0.000;DB;DP=368;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.38;MQRankSum=0.441;QD=29.25;ReadPosRankSum=1.994;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:5,356:0.99:361
chr15	78558509	rs2037347	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:57,84:0.60:141
chr15	78563103	rs3169166	A	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr15	78565414	rs11629630	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,27:0.46:59
chr15	78565478	rs7163689	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:52,61:0.54:113
chr15	78567853	rs967821	G	T	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:184,127:0.41:311
chr15	78572359	rs9806426	C	G	10332.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr15	78578482	rs3832993	TG	T	2488.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:165,95:0.37:260
chr15	78580481	rs2277551	G	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr15	78581892	rs1879153	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	78581938	rs16969675	C	A	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	78585106	rs2280364	C	T	1879.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:58,79:0.58:137
chr15	78585433	rs2280365	C	A	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr15	78587111	rs138711577	TTTG	T	3245.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	78587743	rs34181502	CTT	C	339.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.155;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.166;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:16,19:0.54:35
chr15	78587910	rs1040262	A	G	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	78632830	rs1127472	C	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr15	78633595	rs2139440	T	G	9968.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr15	78758677	rs2958720	G	C	3528.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	78758853	rs2938672	A	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	78763031	.	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=14.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.75;ReadPosRankSum=-2.323;SOR=2.783;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr15	78777312	rs9788758	G	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	78780104	rs2230940	T	C	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr15	78786410	rs4887060	A	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	78789488	rs13180	C	T	3370.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:163,162:0.50:325
chr15	78807231	rs148681032	C	CCTCT,CCTCTCT	2602.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=58.30;QD=49.11;SOR=1.203;set=HC	GT:AD:AF:DP	1/2:0,33,20:0.62,0.38:53
chr15	78807252	rs59105191	A	C	2220.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.96;MQRankSum=-0.355;QD=36.41;ReadPosRankSum=-0.718;SOR=0.627;set=HC	GT:AD:AF:DP	1/1:3,58:0.95:61
chr15	78807252	.	ATA	CTA,CTC	656	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=24;MMLQ=20;MQ=58.59;NF=38,23;NR=16,13;PP=81,656;QD=2.14391134347;SC=CTCTCTCTCTATATATATATA;SbPval=0.71;Source=Platypus;TC=69;TCF=46;TCR=23;TR=54,36;WE=78807262;WS=78807240;set=Platypus	GT:AF:DP	0/1:0.78:69
chr15	78807254	rs146986269	A	C	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=7.360;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-1.187;QD=13.48;ReadPosRankSum=2.657;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:22,44:0.67:66
chr15	78834689	rs2292117	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	78836631	rs67437837	CTGA	C	10526.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	78836661	.	CT	C	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.069;ClippingRankSum=0.000;DP=177;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.588;QD=1.45;ReadPosRankSum=-1.486;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:83,33:0.28:116
chr15	78841220	rs8053	T	C	4014.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr15	78857896	rs503464	T	A	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:49,91:0.65:140
chr15	78857939	rs55853698	T	G	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:157,103:0.40:260
chr15	78857986	rs55781567	C	G	3197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=2.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.409;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:227,164:0.42:391
chr15	78873119	rs569207	C	T	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr15	78879242	rs555018	G	A	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	78880481	rs647041	T	C	242.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	78882925	rs16969968	G	A	4844.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:269,235:0.47:504
chr15	78894339	rs1051730	G	A	3556.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:182,172:0.49:354
chr15	78909452	rs3743075	T	C	3591.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr15	78909480	rs3743074	G	A	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	78909539	rs3743073	G	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	78911181	rs8040868	T	C	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:75,100:0.57:175
chr15	78911261	rs2869547	T	C	2060.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr15	78912943	rs7170068	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:54,38:0.41:92
chr15	78913067	rs66793222	ACAG	A	12917.73	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr15	78917399	rs1948	A	G	12386.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr15	79044330	rs11632672	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;MQ=59.65;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	79045517	rs34816637	G	A	2322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.365;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=5.420;MLEAC=1;MLEAF=0.500;MQ=46.07;MQRankSum=-0.768;QD=10.37;ReadPosRankSum=-0.508;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:121,103:0.46:224
chr15	79045521	rs12917502	T	C	7596.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.46;QD=35.83;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	79054900	rs7495616	C	G	2923.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	79054911	rs11852980	A	G	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=55.86;MQRankSum=-7.464;QD=12.44;ReadPosRankSum=-0.649;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:60,35:0.37:95
chr15	79054919	rs11853054	G	A	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.138;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.861;MLEAC=1;MLEAF=0.500;MQ=55.81;MQRankSum=-7.900;QD=12.50;ReadPosRankSum=-1.521;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:56,33:0.37:89
chr15	79054932	rs11072801	G	C	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,29:0.35:82
chr15	79056526	rs3830240	TC	T	299.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	79057093	rs6495267	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:4,22:0.85:26
chr15	79058572	rs1809421	T	G	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr15	79058923	rs1809422	G	A	252.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.98;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	79059449	rs1810165	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr15	79060367	.	GGGGGTGGGGAGTTGGCGGGGGAT	G	173.79	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.59;QD=28.96;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	79063474	rs1809409	A	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=0.416;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr15	79064080	rs11635931	G	A	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:77,66:0.46:143
chr15	79064143	rs11635870	C	G	1056.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:91,57:0.39:148
chr15	79065380	rs7177201	T	C	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.76;QD=32.92;SOR=3.187;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	79065380	.	TCAGGTGAAGAGCAT	CCAGATGAAGAGCAC,CCAGGTGAAGAGCAT	2811	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.36;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=49.51;NF=11,56;NR=3,11;PP=582,2811;QD=46.1048482044;SC=GAAGGGGCCATCAGGTGAAGA;SbPval=0.41;Source=Platypus;TC=67;TCF=56;TCR=11;TR=14,67;WE=79065402;WS=79065372;set=Platypus	GT:AF:DP	0/1:0.21:67
chr15	79065384	rs28577997	G	A	341.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQRankSum=0.184;QD=4.68;ReadPosRankSum=2.046;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr15	79065394	rs3743061	T	C	370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.431;MLEAC=1;MLEAF=0.500;MQ=52.03;MQRankSum=-1.245;QD=3.94;ReadPosRankSum=0.563;SOR=0.403;set=HC	GT:AD:AF:DP	0/1:77,17:0.18:94
chr15	79065562	rs8036224	A	G	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	79069121	rs11854507	A	G	2524.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:116,124:0.52:240
chr15	79069734	rs7161774	G	T	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr15	79083376	rs2277546	C	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:46,31:0.40:77
chr15	79083591	rs2277545	T	C	1979.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:132,95:0.42:227
chr15	79089007	rs3743057	T	C	8489.77	.	AC=1;AF=0.500;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	0/1:444,420:0.49:864
chr15	79089111	rs3825807	A	G	1714.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:101,78:0.44:179
chr15	79092750	rs7173267	G	C	4163.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:250,206:0.45:456
chr15	79132814	rs7402877	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,60:0.49:122
chr15	79133026	rs6495341	C	T	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:155,198:0.56:353
chr15	79165441	rs8034658	G	T	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=0.727;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:55,74:0.57:129
chr15	79173005	rs17832351	A	G	977.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:43,50:0.54:93
chr15	79215568	rs34577742	C	T	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:105,68:0.39:173
chr15	79217690	rs2044226	G	C	17785.77	.	AC=2;AF=1.00;AN=2;DB;DP=694;set=Intersection	GT:AD:AF:DP	1/1:0,692:1.00:692
chr15	79221662	.	G	A	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.836;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=0.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.269;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:68,58:0.46:126
chr15	79231518	rs11638844	A	G	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr15	79231523	rs35398112	G	GA	4420.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:23,226:0.91:249
chr15	79231616	rs10400902	A	G	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr15	79237180	rs1036937	C	A	13877.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr15	79237247	rs1036938	C	G	15613.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr15	79237324	rs1036939	C	A	6880.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr15	79237403	rs67943698	GGA	G	608.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.27;ReadPosRankSum=-0.725;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:27,27:0.50:54
chr15	79237404	rs60677861	GA	G	497.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.061;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.455;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=2.033;SOR=1.215;set=HC	GT:AD:AF:DP	0/1:30,24:0.44:54
chr15	79254480	rs4778732	T	A	4002.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	79264097	rs4238514	G	A	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	79265866	rs3743195	G	A	2551.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:132,120:0.48:252
chr15	79273098	rs2278650	C	G	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:84,112:0.57:196
chr15	79277150	rs3840034	A	AC	2410.73	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:66,72:0.52:138
chr15	79277247	rs4778750	A	C	12249.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr15	79277298	rs3803544	T	C	5775.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:250,262:0.51:512
chr15	79277511	rs2230518	A	G	4902.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:288,249:0.46:537
chr15	79277608	rs4778751	G	A	4955.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	79288011	rs6495359	A	C	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	79291262	rs12914556	C	T	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:130,155:0.54:285
chr15	79296172	rs1562008	G	A	3280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=3.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.05;ReadPosRankSum=0.219;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:145,152:0.51:297
chr15	79324419	rs2304991	A	G	3351.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr15	79327686	rs736554	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	79502096	rs12903401	G	C	2887.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:106,132:0.55:238
chr15	79586361	rs8038778	T	C	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:281,190:0.40:471
chr15	79606137	rs3825933	G	A	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	79606408	rs3784544	C	T	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	79614206	rs906440	T	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	79614418	rs906439	A	G	13953.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:3,539:0.99:542
chr15	79750127	rs2902954	A	G	3833.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:199,192:0.49:391
chr15	79750307	rs1004724	T	C	2464.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:106,113:0.52:219
chr15	80189058	rs71874818	GCGTGCGCGCGCCGGGAGGGGAAA	G	5853.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:135,152:0.53:287
chr15	80189103	rs75958782	G	T	3262.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:229,181:0.44:410
chr15	80191343	rs7257	G	A	3752.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:187,185:0.50:372
chr15	80214976	rs78016257	GTGC	G	1715.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:55,46:0.46:101
chr15	80215300	rs2733102	T	C	16506.77	.	AC=1;AF=0.500;AN=2;DB;DP=1609;set=Intersection	GT:AD:AF:DP	0/1:818,790:0.49:1608
chr15	80215601	rs17286886	C	T	5579.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:289,271:0.48:560
chr15	80259955	rs146807490	TGTAA	T	6697.73	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:260,176:0.40:436
chr15	80259964	rs16971619	C	T	6761.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:265,185:0.41:450
chr15	80260014	rs8026803	T	C	3780.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=505;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.395;QD=7.50;ReadPosRankSum=0.765;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:296,208:0.41:504
chr15	80260073	rs78937288	G	A	3302.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:116,154:0.57:270
chr15	80263217	rs3826007	C	T	6097.77	.	AC=1;AF=0.500;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	0/1:329,292:0.47:621
chr15	80263345	rs1138358	A	C	4844.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:271,237:0.47:508
chr15	80263406	rs1138357	C	T	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	0/1:191,141:0.42:332
chr15	80365745	rs2866367	T	G	120.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr15	80367682	.	GTT	G	2312.73	.	AC=1;AF=0.500;AN=2;DP=132;set=Intersection	GT:AD:AF:DP	0/1:66,61:0.48:127
chr15	80367831	rs2469600	G	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr15	80405098	rs12594035	C	G	5278.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:307,267:0.47:574
chr15	80412870	rs79140833	T	C	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:46,48:0.51:94
chr15	80413935	rs934003	C	T	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.491;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.85;ReadPosRankSum=-1.159;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr15	80414173	rs1522636	C	G	1218.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:40,57:0.59:97
chr15	80445513	.	G	GGGAGTGGAGTGGAGTGGAGT	5281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.624;ClippingRankSum=0.000;DP=807;ExcessHet=3.0103;FS=0.425;MLEAC=1;MLEAF=0.500;MQ=61.51;MQRankSum=13.837;QD=14.51;ReadPosRankSum=-0.001;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:200,164:0.45:364
chr15	80450328	rs1370276	T	C	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,29:0.69:42
chr15	80450389	rs1370275	G	A	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:42,60:0.59:102
chr15	80452075	rs1370274	T	C	3563.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:200,179:0.47:379
chr15	80452268	rs1370273	G	A	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:32,22:0.41:54
chr15	80452886	rs733679	T	G	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:186,144:0.44:330
chr15	80454745	rs2114716	T	C	2926.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:165,145:0.47:310
chr15	80460524	rs1545119	A	G	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:172,116:0.40:288
chr15	80460576	.	G	GT	907.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DP=314;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.652;QD=3.20;ReadPosRankSum=-1.328;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:189,95:0.33:284
chr15	80465234	rs112775316	G	A	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:58,66:0.53:124
chr15	80465248	rs58363292	GA	G	2828.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:85,85:0.50:170
chr15	80472431	rs2043691	C	A	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:133,191:0.59:324
chr15	80672260	rs36104834	C	A	1656.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:81,75:0.48:156
chr15	80672310	rs35187631	A	C	3700.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:151,173:0.53:324
chr15	80672506	rs35375628	T	C	4371.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:277,215:0.44:492
chr15	80736696	rs72238944	GGT	G	1650.73	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:39,70:0.64:109
chr15	80762526	rs5814026	TC	T	3035.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=6.400;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=3.973;QD=10.40;ReadPosRankSum=-0.330;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:157,135:0.46:292
chr15	80806183	rs11072922	T	C	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:71,61:0.46:132
chr15	80987812	rs62007944	T	C	7548.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr15	81179926	rs2271159	G	T	5481.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=1.025;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr15	81188827	rs74931956	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr15	81199236	rs2271164	A	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	81212608	rs1553647	G	A	21183.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,790:1.00:790
chr15	81217848	rs2271163	C	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:42,41:0.49:83
chr15	81234741	rs1553646	C	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	81410106	rs1533055	G	A	26468.77	.	AC=2;AF=1.00;AN=2;DB;DP=1017;set=Intersection	GT:AD:AF:DP	1/1:0,1012:1.00:1012
chr15	81410202	rs2280440	C	T	19459.77	.	AC=2;AF=1.00;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr15	81410488	rs2250029	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	81426539	rs2683255	G	C	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	81430305	rs55908952	C	G	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	81440147	rs11395672	C	CA	714.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.570;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=7.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=2.507;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:57,44:0.44:101
chr15	81475223	rs57373048	C	T	2389.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:129,121:0.48:250
chr15	81489324	rs8037800	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr15	81518209	rs980618	G	A	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr15	81558026	.	A	C	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DP=439;ExcessHet=3.0103;FS=0.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.941;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:381,57:0.13:438
chr15	81571849	rs59298568	T	A	1907.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	81582406	rs11632576	G	C	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	81582868	rs8031107	G	A	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr15	81584389	rs4072680	C	T	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	81589448	rs17875502	G	A	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	81595737	rs182682701	C	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	81600995	rs4238526	A	G	2710.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	81624768	rs4417518	C	T	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr15	81625385	rs11636318	C	T	5316.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	81631681	rs4489964	C	T	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	81636267	rs7161991	C	T	7561.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr15	81637284	rs4278705	G	A	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	81642100	.	CT	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.210;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.120;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr15	81649001	rs7167034	T	C	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	81651651	rs12903128	G	A	2166.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	81665211	rs71451583	C	CGTGTGTGT,CGTGTGTGTGT	831.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.02;QD=43.78;SOR=2.419;set=HC	GT:AD:AF:DP	1/2:0,8,11:0.42,0.58:19
chr15	81666529	rs11634486	G	A	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	82335444	rs11073028	G	A	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.02;SOR=3.417;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	82431219	rs2457497	A	G	2004.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	82444437	rs905450	A	G	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr15	82512429	rs2292189	C	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	82521192	rs12594303	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	83224696	rs1145171	C	T	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	83230904	.	CTT	C,CT	1539.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=10.008;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.603;QD=13.51;ReadPosRankSum=0.833;SOR=0.730;set=HC	GT:AD:AF:DP	1/2:15,42,57:0.37,0.50:114
chr15	83240293	rs783544	A	C	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	83241984	rs11336258	AT	A	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=1.932;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr15	83331155	rs2278355	C	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	83334128	.	AACACACACACACACACACACACACACAC	A,AAC	2263.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=78;set=Intersection	GT:AF:DP	1/2:0.32,0.68:57
chr15	83334419	rs7494860	T	C	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr15	83358388	rs17841171	A	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	83521036	rs1256429	C	T	8128.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr15	83523368	rs1256426	C	G	5116.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	83528056	rs55861392	G	GT	408.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=20.44;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	83660801	rs57779835	C	G	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	83677270	.	C	CA	329.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=4.001;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.453;QD=2.42;ReadPosRankSum=-0.854;SOR=1.115;set=HC	GT:AD:AF:DP	0/1:99,37:0.27:136
chr15	83680287	rs4842860	A	G	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	83735449	rs66531444	AGCCCG	A	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	83808031	.	TA	T	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.688;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr15	83832934	rs3816450	A	G	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	84116490	rs62027509	C	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	84234179	rs115956298	G	A	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	84373319	rs3079595	C	CAG	1705.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	84442240	rs59307086	G	GT	491.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.94;ReadPosRankSum=3.538;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,31:0.82:38
chr15	84473531	rs7179507	G	A	303.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	84539619	rs4144691	C	G	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	84554018	rs8028931	G	C	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	84651290	rs7176737	T	C	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr15	84705744	rs62026486	G	A	2708.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	84706461	rs950169	C	T	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	84722521	rs1818950	A	G	5996.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr15	84740748	rs35648189	T	C	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	84753177	rs12437525	A	G	497.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	84758840	rs1567086	A	G	1259.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	84782417	rs11638297	A	C	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	84784964	rs11637158	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.39;QD=27.46;SOR=1.739;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	84950047	.	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=0.765;QD=7.76;ReadPosRankSum=-0.290;SOR=0.531;set=HC	GT:AD:AF:DP	0/1:42,35:0.45:77
chr15	84950110	rs62029582	G	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.24;QD=26.34;SOR=4.434;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	84950209	rs10152249	T	C	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	85149771	rs2271433	G	T	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr15	85159397	rs10083683	C	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	85163998	rs2044502	G	C	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	85165699	rs11635597	C	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	85175102	rs2121452	G	A	3736.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	85186637	rs510875	G	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	85187103	rs11630487	C	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	85188994	rs2271432	T	C	11629.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr15	85189464	rs2271431	T	G	5384.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr15	85200520	rs1051168	G	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr15	85201419	rs12904605	T	C	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	85235757	rs12900890	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	85259053	rs6496355	C	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	85333953	rs2241645	A	G	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr15	85360101	rs11857356	T	C	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	85370597	rs891286	C	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	85382193	rs1896864	C	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	85383145	rs3803403	C	G	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr15	85383640	rs3803405	G	A	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	85383839	rs3803406	G	A	6716.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr15	85401259	rs306197	C	T	2864.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr15	85401419	rs167379	T	C	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr15	85405995	rs187316	T	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	85407564	rs2289138	A	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	85438397	rs8187753	A	C	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	85447431	rs2290272	G	A	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	85448684	rs2290270	G	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	85448875	rs8187758	C	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	85448992	rs67047009	G	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	85451852	rs4980349	T	C	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	85452095	rs2305365	C	T	171.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	85461898	rs1562885	G	C	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	85461971	rs1562884	G	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	85467207	rs3825875	T	C	8417.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,321:1.00:321
chr15	85476441	rs2305367	G	A	9418.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr15	85478153	rs7163966	G	T	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	85478410	rs2242048	A	G	6860.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr15	85487960	rs11479919	GC	G	14519.73	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr15	85488128	rs2305366	G	A	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	85488572	rs8025045	T	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	85607563	rs11073916	G	A	4167.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr15	85607670	rs11073917	G	T	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	85652479	rs2304419	C	G	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.51;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	85652486	rs2304420	G	C	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=53.09;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	85656568	rs2304422	A	G	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr15	85659150	rs35865189	CA	C	1155.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.726;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.899;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.004;QD=10.32;ReadPosRankSum=1.048;SOR=0.311;set=HC	GT:AD:AF:DP	0/1:23,89:0.79:112
chr15	85666568	.	TACACACACACACACACACAC	T	3000	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=23;MQ=59.78;NF=3;NR=8;PP=3000;QD=20;SC=ACTAATGGGATACACACACAC;SbPval=0.35;Source=Platypus;TC=21;TCF=4;TCR=17;TR=11;WE=85666595;WS=85666558;set=Platypus	GT:AD:AF:DP	1/1:10,11:0.52:21
chr15	85679984	rs11073962	G	A	664.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	85680021	rs12592211	G	A	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	86077189	rs2279168	A	G	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	86087212	rs7162720	C	T	9382.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr15	86087309	rs2291049	T	C	8162.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,311:1.00:311
chr15	86098507	rs7180143	G	T	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	86098647	rs7164821	T	C	2797.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr15	86122654	rs2061821	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	86122779	rs2061822	T	C	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	86122916	rs2061823	T	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	86123019	rs2061824	C	T	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr15	86123364	rs7177107	G	A	8200.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr15	86123833	rs4075256	T	C	3323.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	86123924	rs4075255	C	T	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	86123988	rs4075254	G	A	2980.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	86124419	rs4843073	C	T	3118.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	86124483	rs4843074	C	G	3935.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	86124555	rs4843075	G	A	4056.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	86124946	rs7162168	T	C	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr15	86124968	rs11633087	G	A	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr15	86125031	rs7178065	G	A	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:1,211:1.00:212
chr15	86129201	rs931082	T	A	937.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	86181286	.	A	ATT	188.77	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	86182856	rs35727345	C	CT	245.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	86189006	rs71468130	G	GT	602.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.532;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.74;ReadPosRankSum=0.208;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:2,34:0.94:36
chr15	86213172	rs338523	A	G	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	86235235	rs16943251	T	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.12;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr15	86253768	rs8037947	T	A	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr15	86253911	rs8038249	T	G	6546.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,253:1.00:254
chr15	86259233	.	CT	C	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=2.056;QD=1.84;ReadPosRankSum=0.318;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chr15	86265644	rs7179917	G	A	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	86278174	rs2241267	C	T	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	86278395	rs17638180	A	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	86278479	rs16943741	A	G	168.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr15	86284817	rs13511	T	C	3087.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	86287910	rs11073517	C	T	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	86313048	rs2614657	T	C	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	86313622	rs62025272	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	86368835	rs4627292	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	86368898	rs4414449	G	A	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr15	86368959	rs4577031	A	T	732.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.43;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	86369050	rs72757332	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	86702241	rs79814209	C	T	9014.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr15	87217488	rs11853730	T	C	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	87217613	rs8028043	A	G	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	87217721	rs11856329	C	G	246.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	87531281	rs1006030	A	C	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.32;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	88423463	rs1560975	C	T	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	88428702	rs2117655	C	A	89.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	88679785	rs1863480	G	A	2121.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	88690736	rs66493620	CCTTCTT	CCTT,C	1699.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=99;set=Intersection	GT:AF:DP	1/1:1.00:47
chr15	89071124	rs10591795	AAAC	A	1779.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=41.39;SOR=2.356;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	89155014	rs41276928	C	T	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	89169858	rs8027765	A	G	9458.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:1,366:1.00:367
chr15	89172352	rs3826040	C	T	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	89172558	rs3743475	G	C	9594.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chr15	89173136	rs3826039	A	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	89173657	rs3826038	A	T	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	89193497	rs12595827	A	T	5424.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr15	89193584	rs8041679	G	C	1590.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	89195245	rs59188950	C	T	1690.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr15	89195526	rs1137166	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr15	89385151	rs2293087	T	G	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr15	89386543	rs11324188	AG	A	2633.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.25;QD=30.99;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	89386652	rs34949187	G	A	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	89386888	rs140556803	C	T	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr15	89390434	rs12911138	G	A	200.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr15	89391160	rs2272023	C	A	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	89392745	rs1568116	T	C	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr15	89398105	rs2351491	C	T	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr15	89398330	rs3743399	G	A	16236.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,586:1.00:586
chr15	89398605	rs938608	G	T	8731.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	89398631	rs938609	T	A	7859.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr15	89400339	rs2882676	A	C	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	89401109	rs4932439	A	G	5825.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	89401615	rs3825994	T	G	4788.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr15	89402051	rs1042630	A	G	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	89402239	rs1042631	T	C	8770.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr15	89402596	rs698621	T	G	9538.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr15	89417238	rs1126823	A	G	3658.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr15	89417629	rs2280465	G	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	89421327	rs2280463	A	G	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr15	89421405	rs7182726	G	A	8845.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr15	89444760	rs2015495	T	C	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	89450546	rs1878327	C	T	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr15	89450587	rs1878326	G	T	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr15	89456306	rs35936125	C	G	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	89456356	rs3743387	G	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	89456544	rs4945	G	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	89734466	rs2239287	G	A	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	89758552	rs4932483	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	89817689	rs11073853	G	C	460.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	89838236	rs7183618	G	A	4692.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.179;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=0.000;QD=25.64;ReadPosRankSum=-0.968;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:2,181:0.99:183
chr15	89849181	.	T	C	930.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,43:0.49:88
chr15	89856047	rs11321073	TA	T	166.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.908;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.42;ReadPosRankSum=0.718;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr15	90029778	rs145810512	TGA	T	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.440;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.24;ReadPosRankSum=-0.166;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:178,20:0.10:198
chr15	90029826	rs4032798	A	T	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=4.34;ReadPosRankSum=3.410;SOR=0.991;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr15	90029828	rs4032797	A	T	795.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=0.000;QD=24.87;ReadPosRankSum=1.741;SOR=0.382;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr15	90029830	rs28385443	A	T	1524.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.82;QD=38.12;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr15	90118767	rs56144360	G	A	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr15	90126218	.	G	GT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.106;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr15	90128799	rs893724	T	A	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	90128910	rs893723	T	C	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	90129188	rs1540504	T	C	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	90129227	rs1540503	A	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	90135196	rs8041127	A	G	1850.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	90135432	rs34494298	A	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr15	90138670	rs8042146	C	T	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr15	90144851	rs4932233	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr15	90144894	rs4932234	T	C	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr15	90144944	rs4244876	G	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	90159575	rs56036125	T	C	3655.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr15	90161355	rs2289486	G	A	4007.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr15	90168108	rs894157	C	T	5760.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	90168693	rs1866928	T	A	4325.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	90169331	rs55653159	A	G	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr15	90170237	rs3743372	C	T	2628.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	90172600	rs74251725	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr15	90172834	rs72750748	T	G	11047.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:1,427:1.00:428
chr15	90176432	rs3803531	T	G	2919.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr15	90177157	rs894156	C	T	6071.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr15	90188514	rs894159	A	G	5259.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	90191827	rs8037349	T	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr15	90192905	rs4932240	T	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	90195765	rs11630003	AA	GG	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr15	90195967	rs8179066	C	G	7504.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr15	90196008	rs8179065	C	T	6629.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	90208310	rs1052700	A	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	90211047	rs894162	A	T	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	90213134	rs2304794	T	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr15	90213229	rs6496589	G	C	4283.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	90214948	rs1077903	C	A	1651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	90233969	rs8029037	G	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	90248819	rs17238056	A	T	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	90258144	rs17238390	C	G	1010.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr15	90273040	rs16943559	C	G	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	90273070	rs12148067	A	G	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	90274639	rs5814401	T	TG	3139.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;MQ=60.11;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	90293776	rs2305441	A	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	90293794	rs2305440	G	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	90294306	rs6496598	C	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	90308026	rs35308090	G	T	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr15	90308061	rs34284515	T	G	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	90308110	rs34936212	A	G	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	90308166	rs72754547	A	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	90308194	rs72754548	G	A	535.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	90308231	rs62023459	A	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.87;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	90308253	rs62024160	G	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.62;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	90308305	rs62024161	T	C	677.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	90320134	rs199821487	AGGGCAGGGGCAG	A	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr15	90328551	rs10584	G	C	3881.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	90328774	rs71464487	A	AAC	4861.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr15	90333851	rs17239917	G	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	90342466	rs117770999	C	T	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr15	90446653	rs1256843	C	T	5110.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr15	90455940	rs1256836	G	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	90627553	rs118053940	G	A	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr15	90634684	rs11316815	CG	C	3531.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	90634941	rs10852126	A	G	2922.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr15	90760991	rs1543116	T	C	11653.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr15	90761136	rs1543115	G	A	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	90762951	rs3833824	A	AG	2073.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr15	90764202	rs7174036	A	G	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	90764348	rs3825999	C	G	7393.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.74;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr15	90764357	rs3826000	G	A	7156.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.88;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	90764359	rs3826001	T	G	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	90765093	rs66795544	CG	C	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr15	90765104	rs35147120	A	G	2159.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr15	90767253	rs117741451	G	A	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	90768156	rs1040083	A	G	3768.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr15	90784207	rs7166441	A	G	5800.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr15	90809633	rs9635390	G	A	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	90905980	.	T	TAC	79	.	AC=1;AF=0.500;AN=2;BRF=0.04;FR=0.5000;HP=6;HapScore=2;MGOF=14;MMLQ=24;MQ=56.92;NF=0;NR=4;PP=79;QD=20.5;SC=GATCTAAAAATACACACACAC;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=4;WE=90905988;WS=90905970;set=Platypus	GT:AD:AF:DP	1/0:5,4:0.44:9
chr15	90999351	.	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.198;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=-1.261;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:37,9:0.20:46
chr15	91017232	rs1145325	G	A	5203.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr15	91040725	rs2301832	A	T	1603.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr15	91043192	rs72311245	ATGTTTTGTTT	A	1718.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.07;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr15	91083353	rs8033595	G	A	5154.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr15	91141810	rs7180867	A	C	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	91147512	rs1104880	A	G	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	91181567	rs6496717	C	T	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	91294897	rs7183841	T	C	249.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	91312313	rs17273206	G	A	4863.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr15	91312823	rs3815003	T	C	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	91337479	rs2227933	G	A	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr15	91337623	rs3214113	AT	A	302.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.18;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	91341599	rs17273842	T	G	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	91346923	rs2227934	C	A	2127.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr15	91354505	rs1063147	C	T	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr15	91358271	rs10685387	G	GGAA	2544.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	91419432	rs11372849	T	TC	2878.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	91422543	rs8039305	T	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr15	91423543	rs6224	G	T	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	91424574	rs6226	G	C	17085.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr15	91430436	rs2071383	T	C	15149.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,566:1.00:566
chr15	91430647	rs28438927	A	C	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr15	91432707	rs111693762	G	T	6138.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr15	91450236	rs74470807	G	A	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	91453186	rs55689110	A	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.99;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	91483531	rs17593423	C	T	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr15	91524841	rs7172758	G	T	9631.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr15	91544539	.	C	CA	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.548;QD=1.79;ReadPosRankSum=0.032;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:90,33:0.27:123
chr15	91769465	rs2073967	G	A	2662.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	92293868	.	G	GTCATGGGGGCAGCGACGGTAC	698.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.93;QD=46.58;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	92293882	rs377140320	C	T	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.29;QD=46.68;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	92293887	.	T	A	466.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.76;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	92293889	.	G	A	466.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.76;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	92293891	.	G	A	466.77	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.76;QD=42.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr15	92293894	.	G	A	421.77	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.27;QD=46.86;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr15	92293902	.	T	A	241.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.59;QD=40.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	92293908	.	T	C	241.84	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.66;QD=48.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	92638193	rs2286355	G	A	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr15	92638326	.	GCCTCT	G	579.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	92638331	.	T	TGAG	579.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	92638332	.	GT	G	273	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=2;MGOF=10;MMLQ=28;MQ=60.0;NF=0;NR=6;PP=273;QD=52.6666666667;SC=CCCTGCCTCTGTAGCTGGGGC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=6;WE=92638340;WS=92638317;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	92638333	.	T	TG	579.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.31;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	92647645	rs1517618	G	C	10559.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr15	92647834	rs917355	A	G	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	92663630	rs6496893	A	G	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr15	92694019	.	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=2.224;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:17,7:0.29:24
chr15	92937268	rs3743365	G	T	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.38;SOR=1.588;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr15	92937276	rs3743364	C	T	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.10;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr15	93016398	rs71412551	A	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	93198671	rs501381	A	G	2639.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr15	93198678	rs68056278	TTGGAGC	T	3618.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr15	93198784	rs2438194	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr15	93306602	rs11634113	TG	CA	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr15	93444548	.	C	T	1589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=3.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=-1.234;SOR=0.924;set=HC	GT:AD:AF:DP	0/1:142,85:0.37:227
chr15	93447631	rs1439619	T	G	1919.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr15	93496874	rs1371390	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	93510603	rs4777755	A	G	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	93521604	rs11074121	A	G	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	93521651	rs11074122	T	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	93522312	rs2272461	G	A	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.39;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	93527794	rs2272459	A	T	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr15	93536197	rs2272457	C	T	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	93540089	rs11630582	T	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	93552330	rs12915582	C	T	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr15	93555717	rs2119010	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	93563164	.	C	CA	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.692;QD=4.30;ReadPosRankSum=-0.097;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr15	93563661	rs964034	G	C	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	93567864	rs12906163	A	C	6365.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr15	93588336	rs4238485	A	C	5235.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr15	93595855	rs1997382	T	C	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr15	93844616	rs12914371	T	A	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr15	93844762	rs12909691	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr15	93844836	rs34239935	G	A	9157.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr15	93844843	rs12914719	T	A	9234.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.56;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,212:1.00:212
chr15	94410009	rs11857265	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	94410296	rs12908831	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr15	94927493	rs3217405	AT	A	865.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	94942497	rs2289009	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	94945719	rs7178698	G	T	8427.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr15	94986276	.	CT	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=3.012;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.436;QD=2.87;ReadPosRankSum=-1.801;SOR=1.333;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr15	95022111	.	G	A	307.77	.	AC=1;AF=0.500;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,14:0.47:30
chr15	97970963	rs4128671	T	C	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr15	98301845	rs2048115	C	T	1223.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr15	98302002	rs143322276	TAAC	T	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr15	98504100	rs4965046	G	C	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	98504326	rs12101554	A	G	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr15	98513086	.	C	CT	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.513;QD=1.26;ReadPosRankSum=0.416;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:43,14:0.25:57
chr15	98984534	rs112229817	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.88;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	98995052	rs56374714	G	GT	4095.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr15	98995081	rs12101356	A	G	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr15	99023968	rs4528551	T	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	99192754	.	CTTTTTTTT	C	1741.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=0.497;QD=26.00;ReadPosRankSum=0.112;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:14,53:0.79:67
chr15	99456253	rs2272037	T	C	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr15	99467934	rs1464430	A	C	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	99472734	rs4486868	T	C	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	99473606	rs33982004	A	G	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr15	99477911	rs2715449	T	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	99478225	rs2229765	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	99478493	rs10400894	T	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr15	99478505	rs34389972	A	AC	984.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	99478713	rs2293117	T	C	5627.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chr15	99511873	rs2715423	G	A	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr15	99646107	rs60530833	A	AG	995.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	99653666	rs2305446	C	T	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr15	99653800	rs2305445	T	C	4104.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	99670989	rs3743248	T	C	5468.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr15	99671760	rs260087	T	C	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr15	99672722	rs2292288	A	G	5854.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:2,215:0.99:217
chr15	99701857	rs3803472	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	99715352	rs2602016	A	G	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr15	99798934	rs7162949	G	A	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:1,100:0.99:101
chr15	99799750	rs1976589	T	C	6137.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr15	100230908	rs325385	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	100243487	rs34131461	GT	G	1650.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	100246834	rs325409	T	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr15	100246936	rs325408	T	C	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.379;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr15	100246942	rs325407	G	A	5797.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.92;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr15	100251015	rs325403	C	G	4370.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr15	100252805	rs325400	G	T	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr15	100256618	rs325380	A	C	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr15	100269309	rs6598263	T	G	2910.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr15	100269680	rs2061007	G	C	7881.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr15	100269796	rs6598264	A	G	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr15	100331253	rs1060457	G	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr15	100331819	rs2958994	A	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	100332799	rs11639102	A	C	2457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.469;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.471;MLEAC=1;MLEAF=0.500;MQ=56.39;MQRankSum=-16.920;QD=7.14;ReadPosRankSum=5.827;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:265,79:0.23:344
chr15	100332807	rs11633999	C	T	2513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-16.623;QD=7.16;ReadPosRankSum=6.391;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:269,82:0.23:351
chr15	100332919	rs2603217	T	C	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.69;QD=30.76;SOR=2.128;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr15	100332989	rs62040187	C	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.61;QD=30.59;SOR=2.007;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr15	100339897	.	T	C	1567	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=1;MGOF=19;MMLQ=22;MQ=56.17;NF=56;NR=61;PP=1567;QD=13.690352244;SC=GTGTTGATGTTGCCGATGATG;SbPval=0.56;Source=Platypus;TC=117;TCF=56;TCR=61;TR=117;WE=100339905;WS=100339887;set=Platypus	GT:AD:AF:DP	1/1:0,117:1.00:117
chr15	100339938	.	C	T	1222	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=2;HapScore=1;MGOF=23;MMLQ=27;MQ=52.04;NF=33;NR=42;PP=1222;QD=16.7569495006;SC=GTGGTGCATGCGCAGCATCTC;SbPval=0.67;Source=Platypus;TC=79;TCF=37;TCR=42;TR=75;WE=100339946;WS=100339928;set=Platypus	GT:AD:AF:DP	1/1:4,75:0.95:79
chr15	100339960	.	G	A	740	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=1;MGOF=27;MMLQ=23;MQ=50.32;NF=15;NR=32;PP=740;QD=16.484493884;SC=TCGCGCCGCTGTGCCTGCTCC;SbPval=0.92;Source=Platypus;TC=60;TCF=27;TCR=33;TR=47;WE=100339968;WS=100339950;set=Platypus	GT:AD:AF:DP	1/0:13,47:0.78:60
chr15	100341255	rs75981261	C	T	175.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.52;QD=29.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr15	100353107	rs8037668	T	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr15	100514561	rs2581340	G	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr15	100514614	rs2573652	T	C	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr15	100516472	rs11634977	G	A	904.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr15	100533218	rs7175995	C	T	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr15	100537494	rs12900132	C	T	4055.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr15	100589056	rs8028251	T	C	2511.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr15	100591992	rs4965569	A	T	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr15	100592021	rs62041049	C	T	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr15	100594271	rs28529328	G	A	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr15	100594299	rs28587358	G	C	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	100603776	rs6598297	T	A	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr15	100672237	rs12907333	T	G	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr15	100794172	rs7172834	T	A	809.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	100794363	rs4369638	C	T	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr15	100801698	rs4965613	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	100801965	rs6598316	G	T	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr15	100802495	rs4965296	G	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr15	100802499	rs4965297	A	G	2904.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr15	100871014	rs148842553	G	A	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr15	100889496	rs2289584	T	G	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr15	100942962	rs2439928	T	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr15	100996076	rs11323964	AT	A	10257.73	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr15	101019529	rs2654574	C	T	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr15	101019819	rs2587763	G	T	371.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	101041896	rs1354332	T	C	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr15	101112342	rs1493652	T	C	1001.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr15	101113862	rs12719734	C	T	2517.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr15	101115448	rs4965678	C	A	90.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr15	101152745	rs4965683	A	C	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr15	101440988	rs4646674	A	C	2853.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr15	101441055	rs4646675	T	C	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	101550861	.	CTT	C,CT	2063.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.061;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.28;MQRankSum=0.718;QD=14.14;ReadPosRankSum=1.023;SOR=0.656;set=HC	GT:AD:AF:DP	1/2:15,42,89:0.29,0.61:146
chr15	101561980	.	CGTGTGTGTGTGTGT	C,CGT	2207.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=67;set=Intersection	GT:AF:DP	1/2:0.22,0.78:59
chr15	101562793	rs11247253	G	A	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	101566118	rs4427776	C	T	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr15	101569467	rs11639307	T	C	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,134:0.99:136
chr15	101591857	rs10710683	CG	C	5188.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr15	101593641	rs11631875	G	A	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.82;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr15	101598200	rs11857803	G	A	6965.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr15	101598314	rs11853661	C	T	2724.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr15	101601367	rs148929418	C	CACTT	6779.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr15	101607513	rs2925201	T	C	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr15	101717680	rs8024370	G	T	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr15	101718927	rs3743193	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr15	101791694	.	GCAGGCT	G	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=0.792;QD=11.68;ReadPosRankSum=-0.000;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr15	101791704	.	CG	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=0.524;QD=16.35;ReadPosRankSum=-1.645;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr15	101791709	.	CCTCAGCCCGCT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=0.524;QD=7.55;ReadPosRankSum=-1.282;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:3,2:0.40:5
chr15	101791724	.	C	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.59;ReadPosRankSum=-0.967;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:2,1:0.33:3
chr15	101826386	rs62621227	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr15	101862690	rs36022203	G	T	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr15	101862970	rs1871975	T	C	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr15	101871941	rs34318939	G	GA	4425.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr15	101887767	rs2949	C	T	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr15	101887794	rs1030	T	C	757.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr15	101888081	rs875293	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr15	101905084	rs4965833	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	101905327	rs11247286	C	T	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr15	101906205	rs8029952	T	C	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr15	101906263	rs8034182	T	C	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr15	101910511	rs2073591	A	C	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr15	101910550	rs20543	G	A	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr15	101929632	rs141220261	ATT	A	3463.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:5,116:0.96:121
chr15	101929825	rs6598460	G	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr15	101970091	rs3743190	C	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr15	101970308	rs2643354	G	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr15	101970323	rs3825896	G	T	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	101970336	rs3825895	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr15	101971388	rs2643356	T	C	912.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr15	102003442	rs12907397	C	T	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr15	102029475	rs201114579	C	CG	647.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr15	102029519	rs186935141	C	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr15	102029597	rs1135910	C	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=24.70;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr15	102029685	rs199543153	G	GGC	3770.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr15	102191869	rs672314	G	A	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:80,98:0.55:178
chr15	102192034	rs507903	A	G	4642.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:192,219:0.53:411
chr15	102192502	rs1127963	G	A	17006.77	.	AC=1;AF=0.500;AN=2;DB;DP=1649;set=Intersection	GT:AD:AF:DP	0/1:827,816:0.50:1643
chr15	102192540	rs675436	T	G	12448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=1181;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=-0.978;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:575,604:0.51:1179
chr15	102192548	rs2939587	A	C	38140.77	.	AC=2;AF=1.00;AN=2;DB;DP=1074;set=Intersection	GT:AD:AF:DP	1/1:0,1071:1.00:1071
chr15	102196186	rs572705	C	T	5727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.05;ReadPosRankSum=-1.442;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:334,299:0.47:633
chr15	102211654	rs606511	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr15	102226333	rs28640036	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr15	102251993	rs11247320	G	A	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr15	102264476	rs1143136	C	A	7905.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr15	102277480	rs1052887	G	C	5188.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr15	102284597	rs62027633	A	G	2180.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:125,114:0.48:239
chr15	102284675	rs182931332	A	G	2466.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:143,123:0.46:266
chr15	102287989	.	A	AT	860.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459;ClippingRankSum=0.000;DP=189;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=47.39;MQRankSum=-7.233;QD=4.65;ReadPosRankSum=1.316;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:119,66:0.36:185
chr15	102288016	rs201217805	C	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=5.652;MLEAC=1;MLEAF=0.500;MQ=47.31;MQRankSum=-7.310;QD=5.60;ReadPosRankSum=2.371;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:117,62:0.35:179
chr15	102291954	rs28521777	C	T	4690.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:198,221:0.53:419
chr15	102312022	rs142593587	C	T	2566.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.415;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.79;MQRankSum=0.944;QD=25.16;ReadPosRankSum=2.367;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,101:0.99:102
chr15	102312240	rs59860046	GA	G	3698.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.23;QD=33.62;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr15	102312315	rs57638732	GA	G	2963.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.71;QD=36.14;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr15	102312835	rs62026997	C	T	11800.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr15	102313716	rs352719	A	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	97610	rs798675	G	A	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:203,96:0.32:299
chr16	103423	rs2541593	C	A	3711.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	103449	rs11376822	C	CG	7526.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	103517	rs183360	A	C	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr16	103923	rs2562145	C	G	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,72:0.64:113
chr16	105320	rs216596	A	G	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.34;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	105325	rs2858042	G	A	1030.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	105444	rs2541594	C	T	5074.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	106777	rs216597	G	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	106952	rs11435836	G	GC	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	107275	rs1045001	T	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	108585	rs216598	T	C	7467.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	108796	rs34941405	T	TG	3112.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	109671	rs216599	A	G	8739.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr16	110165	rs216600	T	C	8191.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	110925	rs2562146	T	C	1619.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	111247	rs79691782	C	T	4528.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:127,204:0.62:331
chr16	112151	rs216602	A	G	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	112513	rs216604	T	C	5530.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	113883	rs10659183	G	GCC	14198.73	.	AC=2;AF=1.00;AN=2;DB;DP=322;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr16	113886	rs11285099	GC	G	14304.73	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	113970	rs2157115	T	C	8330.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr16	114535	rs2562147	A	G	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	115041	rs2288490	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:225,112:0.33:337
chr16	115072	rs6600227	A	C	1763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-0.780;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:231,110:0.32:341
chr16	128179	rs2562162	T	C	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	136888	rs743725	T	C	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:24,39:0.62:63
chr16	138772	rs57321480	A	AG	10821.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	142825	rs2541618	T	C	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	148352	rs2541616	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:1,160:0.99:161
chr16	160668	rs808892	T	C	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	203118	.	G	GACAGTGGGGAGGGGACAGTGGGGAGAGGACAGTAAGGAGGGGACCATGGGGAGGAC	809.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.29;QD=50.61;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	203144	rs2947790	A	G	218.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=21.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	213310	.	GGAGGGGACAGTGAGTAGGAGACAGTGGGGAGAGGACAGTGGA	G	563.73	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.19;QD=40.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	216190	rs11431675	C	CG	5855.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	223706	rs2541640	A	G	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:1,201:1.00:202
chr16	223735	rs2685121	A	G	3288.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	230455	rs141942919	G	T	260.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:16,12:0.43:28
chr16	230578	rs11863726	A	G	1756.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:211,94:0.31:305
chr16	240280	rs1211375	A	C	609.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:33,24:0.42:57
chr16	277064	rs72765805	C	G	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr16	277124	rs17135705	A	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:91,40:0.31:131
chr16	277458	rs1203974	G	A	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	277912	rs8045291	A	G	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:106,70:0.40:176
chr16	284556	rs7191945	G	C	422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.629;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-1.174;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:82,29:0.26:111
chr16	284833	rs7202423	T	G	1989.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	304514	rs3213508	C	T	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:134,81:0.38:215
chr16	309720	rs56337617	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr16	310243	rs56284809	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.970;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.808;SOR=0.290;set=HC	GT:AD:AF:DP	0/1:29,6:0.17:35
chr16	311970	.	CTCTCTTCCTGGGCCTTGTGTCATTGCAGCCCCAGGCTCAGGTCCT	C	795.73	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:64,41:0.39:105
chr16	312253	rs10903013	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:135,72:0.35:207
chr16	313202	rs2239738	C	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:105,43:0.29:148
chr16	313406	rs7189326	A	G	2391.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:238,132:0.36:370
chr16	313848	rs12325227	C	T	2042.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:158,99:0.39:257
chr16	319511	rs739999	A	G	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:277,160:0.37:437
chr16	321626	rs117340695	C	T	4832.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:136,217:0.61:353
chr16	322934	rs9940585	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:120,50:0.29:170
chr16	324030	rs112344350	T	TG	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=1.062;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-1.021;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:65,22:0.25:87
chr16	324052	rs2685126	A	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.749;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.313;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:106,35:0.25:141
chr16	325683	rs200964940	C	CG	695.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	325695	rs201791993	A	AG	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	325732	rs202190256	A	AG	1053.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	325771	rs111978133	GT	G	1455.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	325943	.	A	AG	526.73	.	AC=2;AF=1.00;AN=2;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	330661	.	C	CG	187.87	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.57;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	330678	rs368146102	G	A	245.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	330823	rs146218748	G	C	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr16	332558	rs61572786	CG	C	318.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.219;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=5.071;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=1.185;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr16	333138	rs28365941	T	C	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr16	334580	rs432925	G	C	1831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=382;ExcessHet=3.0103;FS=2.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=1.254;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:263,116:0.31:379
chr16	334732	rs45593734	C	T	1364.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:140,75:0.35:215
chr16	336660	rs11647490	G	A	9671.77	.	AC=1;AF=0.500;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	0/1:224,432:0.66:656
chr16	336916	rs1048786	C	T	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:121,53:0.30:174
chr16	338332	rs11374767	A	AC	1168.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:85,50:0.37:135
chr16	339672	rs412243	T	C	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=1.004;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:75,41:0.35:116
chr16	341079	rs12925669	G	A	469.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr16	354287	rs62032881	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:70,51:0.42:121
chr16	354493	rs62032882	C	T	2051.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:177,109:0.38:286
chr16	359953	rs2301522	A	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:96,66:0.41:162
chr16	396264	rs1805105	A	G	2174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=1.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=1.133;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:353,141:0.29:494
chr16	397044	rs758033	G	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:141,103:0.42:244
chr16	418462	rs11640313	C	G	2499.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:210,130:0.38:340
chr16	419092	rs3830160	A	G	542.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:89,36:0.29:125
chr16	419154	rs1802752	G	A	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.060;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:143,56:0.28:199
chr16	419283	rs11434190	A	AG	3642.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	420140	rs3194151	G	A	832.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:99,46:0.32:145
chr16	424420	rs3743888	C	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.906;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr16	425298	rs11648905	G	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:115,62:0.35:177
chr16	426432	rs2071915	T	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:135,78:0.37:213
chr16	426476	rs2071916	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:117,73:0.38:190
chr16	427013	rs763140	G	C	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:178,91:0.34:269
chr16	427349	rs763142	C	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:22,19:0.46:41
chr16	427393	rs371688676	C	T	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.664;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.895;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=2.200;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:33,23:0.41:56
chr16	427479	rs11248931	T	C	467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.203;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.092;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:89,33:0.27:122
chr16	427516	rs11649031	T	C	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.441;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.628;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:114,44:0.28:158
chr16	427657	rs11641693	G	A	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:97,63:0.39:160
chr16	427784	rs11641742	G	A	1603.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:111,81:0.42:192
chr16	427820	rs12922073	C	T	1319.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:93,68:0.42:161
chr16	427866	rs12933709	T	C	835.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:51,44:0.46:95
chr16	427925	rs61261356	T	C	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr16	431890	.	AGCCTCTGCCGCCTCC	A	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.083;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.727;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,3:0.20:15
chr16	449162	rs7185254	T	C	3472.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	449178	rs2363759	T	G	3457.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	449345	rs763151	G	C	11568.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr16	449659	rs14293	G	A	11766.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr16	449977	rs62030825	G	C	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.60;SOR=2.895;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	449979	rs62030826	AC	GT	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.06;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	450140	rs35963490	C	CAG	14698.73	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr16	450165	rs448063	T	C	8456.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr16	450309	rs5841	C	T	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	455646	rs873477	A	G	637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=-1.396;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:68,38:0.36:106
chr16	456239	rs11391097	G	GC	5012.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	456291	rs11391098	G	GC	9312.73	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr16	456416	rs3743890	T	G	3964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=3.586;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.696;QD=14.47;ReadPosRankSum=-1.322;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:88,186:0.68:274
chr16	456483	rs3785290	T	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:42,104:0.71:146
chr16	460578	rs11315123	CT	C	195.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr16	460976	rs140561403	G	A	2482.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:57,111:0.66:168
chr16	461697	rs4984667	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:44,33:0.43:77
chr16	476096	rs1883371	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	532248	rs9935319	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,35:0.62:56
chr16	532279	rs12917958	C	G	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:30,59:0.66:89
chr16	538711	rs3079539	C	CTT	550.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=15.74;ReadPosRankSum=0.293;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr16	539088	rs3830847	T	TAA	3952.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:41,100:0.71:141
chr16	539093	rs74390230	G	C	3753.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:39,93:0.70:132
chr16	570454	rs11863276	T	C	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr16	570557	rs11537754	T	C	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DB;DP=381;ExcessHet=3.0103;FS=1.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=1.109;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:239,140:0.37:379
chr16	570623	rs2071978	G	A	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:315,173:0.35:488
chr16	601632	rs3213574	T	C	2398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=1.197;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:191,136:0.42:327
chr16	601892	rs28422497	T	C	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=0.296;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:104,75:0.42:179
chr16	601914	rs12449064	G	A	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.69;ReadPosRankSum=0.217;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:87,60:0.41:147
chr16	602046	rs7196821	T	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	603471	rs11248937	A	G	7713.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	613168	rs12597975	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	614445	rs57546191	C	T	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,57:0.62:92
chr16	614658	rs60243750	A	G	390.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr16	614763	rs113355349	T	C	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr16	614821	rs1010761	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:48,85:0.64:133
chr16	615326	rs59985111	T	C	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	622565	rs12917944	A	G	18028.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr16	622568	rs144282116	G	GATGT	12139.73	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:161,297:0.65:458
chr16	624114	rs2071979	A	G	17960.77	.	AC=2;AF=1.00;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr16	624713	rs4984669	C	T	5058.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr16	624796	rs143299619	G	A	1195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.083;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:132,72:0.35:204
chr16	626346	rs2071980	A	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	628302	rs3752568	A	G	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	628994	rs113780855	TGGGC	T	11887.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	629006	rs59476302	C	T	12023.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=45.54;SOR=1.232;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	630089	rs7191939	C	T	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	630367	rs7192508	C	T	4744.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	630405	rs2071982	T	G	2930.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	630902	rs1045274	C	G	7612.77	.	AC=1;AF=0.500;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	0/1:283,356:0.56:639
chr16	632011	rs74872027	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr16	632051	rs2018789	T	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	632073	rs916414	C	T	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	632115	rs916415	G	A	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	632138	rs4262946	C	T	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	632180	rs4984897	G	C	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr16	632198	rs916416	T	A	6944.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr16	632225	rs4006748	T	C	13073.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	632230	rs67976359	CG	C	13124.73	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	632233	rs62030874	T	C	13035.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	632283	rs7187227	G	A	4595.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:129,214:0.62:343
chr16	633125	rs1045277	T	C	9768.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr16	633353	rs710924	TG	CA	23091.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr16	633764	rs8642	G	A	2103.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:160,102:0.39:262
chr16	633843	rs8675	A	G	4707.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=40.94;SOR=1.549;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	633851	rs8909	T	C	4211.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=46.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	640440	rs61753371	C	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.483;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:65,37:0.36:102
chr16	646246	rs72767868	G	A	2803.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:91,136:0.60:227
chr16	646421	rs4984672	A	G	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr16	667490	rs12447387	A	G	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:6,16:0.73:22
chr16	668443	rs34011309	A	G	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	675067	rs62623587	C	A	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:177,91:0.34:268
chr16	675087	rs3838962	AC	A	2724.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:176,90:0.34:266
chr16	675215	rs2269556	G	A	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,38:0.33:116
chr16	677629	rs2269557	T	C	2593.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:203,138:0.40:341
chr16	679814	rs12447874	T	C	14119.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr16	679953	rs17139376	C	T	4650.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:145,217:0.60:362
chr16	681280	rs4984905	G	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:120,76:0.39:196
chr16	681284	rs8062289	C	T	2659.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:74,121:0.62:195
chr16	681587	rs111991728	TTAAGAA	T	539.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	682566	rs2269561	T	C	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:263,149:0.36:412
chr16	688557	rs34409359	A	C	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr16	691819	rs181232491	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.233;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr16	699456	rs12934086	A	G	195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.16;ReadPosRankSum=0.408;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr16	700896	.	C	T	1955.77	.	AC=1;AF=0.500;AN=2;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,84:0.63:134
chr16	700970	rs2076142	C	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:174,95:0.35:269
chr16	701296	rs2076143	G	C	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.00;ReadPosRankSum=0.230;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:48,19:0.28:67
chr16	701303	rs2076144	C	T	620.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.09;ReadPosRankSum=-1.188;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr16	701656	rs11642546	C	T	1464.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:156,81:0.34:237
chr16	702378	rs117341102	A	G	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:139,74:0.35:213
chr16	702677	rs2072879	C	G	411.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:50,21:0.30:71
chr16	703721	rs9936879	A	C	2830.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:255,151:0.37:406
chr16	705360	rs3803697	T	C	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.065;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=-0.300;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:170,77:0.31:247
chr16	705844	rs8051645	T	C	3506.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:314,180:0.36:494
chr16	705920	rs9930754	G	C	1454.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=0.518;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:170,84:0.33:254
chr16	706010	rs35582942	C	CA	269.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=0.201;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr16	706067	rs9932866	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	706534	rs28485323	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.71;ReadPosRankSum=1.574;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:34,35:0.51:69
chr16	706668	rs34775748	G	A	1582.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:157,85:0.35:242
chr16	707034	rs6600228	A	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.038;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.090;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr16	707295	rs6600229	T	G	734.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:43,35:0.45:78
chr16	707748	rs36022186	C	T	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:124,55:0.31:179
chr16	708071	rs2071831	G	C	1220.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:95,56:0.37:151
chr16	708275	rs45613635	C	A	2726.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:273,150:0.35:423
chr16	708419	rs7188691	T	C	1510.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:139,76:0.35:215
chr16	709001	rs4984906	C	A	2746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.616;ClippingRankSum=0.000;DB;DP=581;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.040;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:411,167:0.29:578
chr16	709157	rs7194532	T	C	4186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=734;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.72;ReadPosRankSum=-0.361;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:491,241:0.33:732
chr16	711326	rs9932282	G	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:79,36:0.31:115
chr16	711545	rs11284424	CG	C	2961.73	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:292,143:0.33:435
chr16	711572	rs8062682	C	T	5092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.184;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.928;QD=10.77;ReadPosRankSum=-0.477;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:324,149:0.32:473
chr16	711582	rs8062685	C	G	5317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.272;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.726;QD=11.54;ReadPosRankSum=-2.098;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:305,156:0.34:461
chr16	711712	rs3177415	C	T	3535.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:407,203:0.33:610
chr16	711905	rs2301426	A	G	3405.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:386,196:0.34:582
chr16	712127	rs10903018	A	G	3549.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	712154	rs11248943	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:108,55:0.34:163
chr16	712867	rs1057835	A	G	2390.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:290,144:0.33:434
chr16	713204	rs9929652	A	G	329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.671;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=10.768;MLEAC=1;MLEAF=0.500;MQ=59.27;MQRankSum=0.961;QD=5.59;ReadPosRankSum=-2.308;SOR=2.618;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr16	715847	rs3752494	A	G	408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.879;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.009;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:67,25:0.27:92
chr16	715990	rs7190775	G	A	1291.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:158,75:0.32:233
chr16	716428	rs3743909	G	A	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:299,148:0.33:447
chr16	716631	rs117904014	C	T	10502.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:279,475:0.63:754
chr16	716798	rs12447392	C	T	2720.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:231,147:0.39:378
chr16	717057	rs7189028	T	C	1093.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:86,55:0.39:141
chr16	717085	rs7197072	C	T	623.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:58,31:0.35:89
chr16	717523	rs3752493	G	T	2056.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:292,125:0.30:417
chr16	717828	rs3752490	G	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:68,38:0.36:106
chr16	718514	rs7204542	C	G	5841.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:126,266:0.68:392
chr16	720041	rs3752489	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr16	720986	rs1139897	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:164,98:0.37:262
chr16	721798	rs146789763	T	TCCCCTG	3859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=467;ExcessHet=3.0103;FS=6.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=-0.459;SOR=1.289;set=HC	GT:AD:AF:DP	0/1:236,118:0.33:354
chr16	722331	rs3177338	C	T	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:250,109:0.30:359
chr16	722548	rs1128550	A	G	2789.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-0.210;SOR=0.535;set=HC	GT:AD:AF:DP	0/1:190,138:0.42:328
chr16	723647	rs1045716	C	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:16,17:0.52:33
chr16	732287	rs3216838	GC	G	5252.73	.	AC=1;AF=0.500;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	0/1:328,183:0.36:511
chr16	735794	rs11640115	A	G	9941.77	.	AC=1;AF=0.500;AN=2;DB;DP=1530;set=Intersection	GT:AD:AF:DP	0/1:979,542:0.36:1521
chr16	735921	rs763053	T	C	5469.77	.	AC=1;AF=0.500;AN=2;DB;DP=1009;set=Intersection	GT:AD:AF:DP	0/1:679,326:0.32:1005
chr16	737793	rs1018804	G	A	1925.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:174,102:0.37:276
chr16	746884	rs4984683	A	C	4804.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:407,251:0.38:658
chr16	746914	rs4984915	G	A	5012.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:464,269:0.37:733
chr16	747454	rs12922098	T	C	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr16	766001	rs1076939	T	G	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=31.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.468;SOR=2.342;set=HC	GT:AD:AF:DP	0/1:168,39:0.19:207
chr16	766078	rs66649828	A	G	96.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=0.049;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:61,13:0.18:74
chr16	766485	rs6600231	G	A	1176.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:109,63:0.37:172
chr16	767426	rs5815052	T	TG	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.302;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.216;QD=4.01;ReadPosRankSum=0.824;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr16	767430	rs10682	C	G	261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=1.369;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:52,10:0.16:62
chr16	767519	rs4589552	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.844;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:27,8:0.23:35
chr16	771234	rs55708282	C	T	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.636;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	771286	rs11540049	C	T	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	771750	rs3752555	T	C	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr16	772061	rs55956436	C	T	7152.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	772141	rs11867009	G	C	7001.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	772842	rs12599130	T	C	10711.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr16	773291	rs35843452	GC	G	5359.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	773313	rs58842228	G	GC	5068.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:3,186:0.98:189
chr16	773341	rs4984920	G	A	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chr16	773367	rs55787204	G	T	4769.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:132,215:0.62:347
chr16	774045	rs145548033	TGGGGCAGTGGGTGGGTGG	T	1474.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.300;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=28.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.221;SOR=0.060;set=HC	GT:AD:AF:DP	0/1:71,41:0.37:112
chr16	774520	rs4984921	C	T	8122.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	774692	rs2071950	A	G	9545.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	775947	rs12446058	G	C	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.27;ReadPosRankSum=0.130;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:68,126:0.65:194
chr16	775954	rs12448311	CC	AA	4970.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.106;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=1.217;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.46;ReadPosRankSum=0.010;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:63,118:0.65:181
chr16	777627	rs7188886	C	T	4831.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:135,218:0.62:353
chr16	778024	rs1406814	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.786;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.273;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.937;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:135,52:0.28:187
chr16	778158	rs1406815	C	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr16	778820	rs12448432	G	A	3248.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:260,170:0.40:430
chr16	779689	rs1054788	G	C	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr16	780339	rs7205337	A	G	1686.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:178,90:0.34:268
chr16	781633	rs3829492	G	A	3524.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:325,193:0.37:518
chr16	782397	rs12443803	C	T	6240.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:183,287:0.61:470
chr16	782644	rs36119940	C	CT	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=-0.291;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:43,22:0.34:65
chr16	784507	rs67935101	C	T	6970.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:127,294:0.70:421
chr16	784765	rs9928077	C	T	4998.77	.	AC=1;AF=0.500;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	0/1:393,255:0.39:648
chr16	784920	rs9932304	A	G	2260.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	787738	rs12597563	G	C	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,16:0.27:60
chr16	787827	rs12449156	A	C	310.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr16	789618	rs10794640	G	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr16	789761	rs3752556	A	G	426.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,26:0.27:97
chr16	813783	.	C	A	722	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=3;HapScore=2;MGOF=31;MMLQ=27;MQ=60.0;NF=2;NR=18;PP=722;QD=37.8385606274;SC=CCAGCATCCCCTCCCCCTTCC;SbPval=0.95;Source=Platypus;TC=26;TCF=6;TCR=20;TR=20;WE=813791;WS=813765;set=Platypus	GT:AD:AF:DP	1/0:6,20:0.77:26
chr16	815628	rs1737340	A	G	18575.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,704:1.00:704
chr16	829955	rs3765329	G	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,9:0.23:40
chr16	830829	rs3765330	A	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=525;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-5.349;QD=1.92;ReadPosRankSum=7.083;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:392,51:0.12:443
chr16	833291	rs35339491	C	G	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:227,101:0.31:328
chr16	833410	rs80313379	A	C	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=1.023;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr16	837310	rs531278	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	838407	.	GC	G	220.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.873;QD=11.62;ReadPosRankSum=-1.523;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	839184	rs117479929	T	C	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:188,101:0.35:289
chr16	839262	rs569951	A	G	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	839949	rs11425062	C	CT	6509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597;ClippingRankSum=0.000;DB;DP=780;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.348;QD=8.37;ReadPosRankSum=1.342;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:537,241:0.31:778
chr16	839996	rs4984925	T	C	6317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=1120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.216;QD=5.66;ReadPosRankSum=-2.274;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:752,365:0.33:1117
chr16	840307	rs3765262	C	A	1800.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:221,102:0.32:323
chr16	840378	rs3765263	A	G	2411.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:322,145:0.31:467
chr16	840597	rs3765265	C	T	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:107,54:0.34:161
chr16	845609	.	G	GC	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824;ClippingRankSum=-0.000;DP=24;ExcessHet=3.0103;FS=23.424;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-2.000;QD=3.39;ReadPosRankSum=0.611;SOR=2.773;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr16	845613	.	T	C	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=14.150;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-2.132;QD=3.83;ReadPosRankSum=-1.189;SOR=2.201;set=HC	GT:AD:AF:DP	0/1:11,2:0.15:13
chr16	845901	rs2982244	T	C	22430.77	.	AC=2;AF=1.00;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	1/1:0,831:1.00:831
chr16	846631	rs117572388	G	A	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:38,26:0.41:64
chr16	855342	rs614048	A	G	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,40:0.35:114
chr16	1031303	.	TGAGA	T	471.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=-0.000;DP=65;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.000;QD=19.66;ReadPosRankSum=3.481;SOR=1.288;set=HC	GT:AD:AF:DP	0/1:6,18:0.75:24
chr16	1031305	.	A	T	399	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=3;MGOF=35;MMLQ=25;MQ=58.62;NF=11;NR=20;PP=399;QD=13.9926197596;SC=TGTGTGTGTGAGAGAGAGAGA;SbPval=0.58;Source=Platypus;TC=72;TCF=26;TCR=46;TR=31;WE=1031316;WS=1031293;set=Platypus	GT:AD:AF:DP	0/1:41,31:0.43:72
chr16	1031343	.	AGAGAGTGT	A	646	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=2;HapScore=1;MGOF=46;MMLQ=24;MQ=54.6;NF=3;NR=16;PP=646;QD=34.1578947368;SC=AGAGAGAGAGAGAGAGTGTGT;SbPval=0.71;Source=Platypus;TC=26;TCF=5;TCR=21;TR=19;WE=1031358;WS=1031333;set=Platypus	GT:AD:AF:DP	0/1:7,19:0.73:26
chr16	1034834	rs237674	T	C	13393.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr16	1115377	rs11649498	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:18,35:0.66:53
chr16	1115493	rs200810931	G	GT	1002.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:78,47:0.38:125
chr16	1115842	rs143173222	CGGCA	C	3897.73	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:80,179:0.69:259
chr16	1115904	rs66626263	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:222,107:0.33:329
chr16	1116169	rs7189857	A	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:124,51:0.29:175
chr16	1116220	rs34024516	T	TG	4861.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	1116243	rs35432067	C	T	653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.211;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.689;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=-0.868;QD=4.77;ReadPosRankSum=1.218;SOR=1.026;set=HC	GT:AD:AF:DP	0/1:99,38:0.28:137
chr16	1116445	rs530518	A	G	9486.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:1,361:1.00:362
chr16	1129872	rs169068	C	T	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:308,166:0.35:474
chr16	1129912	rs642249	A	G	8083.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr16	1131181	rs12599155	C	T	4068.77	.	AC=1;AF=0.500;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	0/1:445,228:0.34:673
chr16	1204116	rs112034409	A	G	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:40,26:0.39:66
chr16	1244877	rs9936834	G	A	6116.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.77;SOR=1.027;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	1244887	rs3751661	T	A	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.41;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	1245293	rs35250176	G	A	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	1250559	rs8044363	T	C	13881.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr16	1252259	rs9934839	A	G	13137.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr16	1252441	rs4984636	T	C	7732.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	1255030	rs2974835	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	1255040	rs56412134	GC	G	2363.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	1255058	rs8052049	T	G	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=38.84;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	1256839	rs115172853	T	C	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr16	1257731	rs12930875	G	A	6835.77	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:177,332:0.65:509
chr16	1260021	rs8056494	G	T	1912.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:52,83:0.61:135
chr16	1260481	rs8063574	T	C	10449.77	.	AC=1;AF=0.500;AN=2;DB;DP=782;set=Intersection	GT:AD:AF:DP	0/1:283,483:0.63:766
chr16	1260767	rs2738897	G	A	5464.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:132,239:0.64:371
chr16	1261024	rs2738898	C	T	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr16	1261082	.	C	T	1239.77	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,44:0.64:69
chr16	1261119	rs2738899	G	A	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,65:0.62:104
chr16	1261219	rs2753326	A	G	5767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284;ClippingRankSum=0.000;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=-1.035;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:210,273:0.57:483
chr16	1261222	rs2753325	A	G	11111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.36;ReadPosRankSum=-2.032;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:208,289:0.58:497
chr16	1261282	rs4984637	T	C	7793.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:251,363:0.59:614
chr16	1261377	rs2738900	G	A	3668.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:113,157:0.58:270
chr16	1265720	rs3897150	C	T	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:111,197:0.64:308
chr16	1266803	rs11395347	C	CT	2273.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	1268494	rs2745136	C	T	4803.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:127,214:0.63:341
chr16	1269029	rs2738893	T	C	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:161,190:0.54:351
chr16	1270162	rs1054645	G	A	7562.77	.	AC=1;AF=0.500;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	0/1:182,354:0.66:536
chr16	1270349	rs4247094	T	C	3127.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:65,137:0.68:202
chr16	1271890	rs1004041	G	T	4567.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:117,211:0.64:328
chr16	1272038	rs11248860	G	A	5358.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:119,247:0.67:366
chr16	1272298	rs146081704	G	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:71,37:0.34:108
chr16	1272349	rs201032433	G	A	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:14,31:0.69:45
chr16	1272684	rs4984638	C	G	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.38;ReadPosRankSum=-2.034;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:19,59:0.76:78
chr16	1272865	rs4984639	G	A	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-0.422;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr16	1273025	rs35047315	C	T	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.08;ReadPosRankSum=0.566;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,6:0.60:10
chr16	1273490	rs760357	C	T	1047.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:29,46:0.61:75
chr16	1273638	rs909920	A	G	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:94,152:0.62:246
chr16	1275135	rs9938123	T	C	7260.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:2,279:0.99:281
chr16	1278599	rs4360940	A	G	8071.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	1278744	rs62012862	C	T	2292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.804;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.726;MLEAC=1;MLEAF=0.500;MQ=50.97;MQRankSum=0.585;QD=19.60;ReadPosRankSum=0.257;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:46,71:0.61:117
chr16	1278767	rs201725275	C	T	1701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.967;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=44.94;MQRankSum=-1.486;QD=23.97;ReadPosRankSum=1.933;SOR=1.382;set=HC	GT:AD:AF:DP	0/1:30,41:0.58:71
chr16	1278806	rs199504258	G	A	698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.500;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=20.55;ReadPosRankSum=-1.002;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr16	1279537	rs188458795	C	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.654;MLEAC=1;MLEAF=0.500;MQ=52.81;MQRankSum=-1.484;QD=4.53;ReadPosRankSum=-0.667;SOR=2.125;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr16	1279545	rs1800990	T	C	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.744;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=10.268;MLEAC=1;MLEAF=0.500;MQ=53.88;MQRankSum=-1.151;QD=5.04;ReadPosRankSum=-0.020;SOR=2.425;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr16	1279555	rs148897236	C	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.477;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-0.493;QD=10.02;ReadPosRankSum=-2.234;SOR=1.182;set=HC	GT:AD:AF:DP	0/1:57,21:0.27:78
chr16	1279574	rs199887053	C	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.278;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=55.73;MQRankSum=0.335;QD=12.88;ReadPosRankSum=-2.533;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:58,32:0.36:90
chr16	1279584	rs111992451	T	C	1291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=0.380;QD=11.96;ReadPosRankSum=-1.701;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:67,41:0.38:108
chr16	1279623	rs72633259	G	A	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=57.85;MQRankSum=-2.568;QD=7.14;ReadPosRankSum=2.346;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:70,50:0.42:120
chr16	1279704	rs202107419	A	G	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.924;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=56.67;MQRankSum=-1.245;QD=11.96;ReadPosRankSum=-0.521;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:36,20:0.36:56
chr16	1279710	rs200630968	G	A	640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-1.580;QD=11.87;ReadPosRankSum=-0.636;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr16	1279714	rs192643610	A	G	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-1.580;QD=11.46;ReadPosRankSum=-1.042;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:36,18:0.33:54
chr16	1279717	rs201728868	C	T	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.281;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.136;MLEAC=1;MLEAF=0.500;MQ=56.41;MQRankSum=-1.340;QD=11.90;ReadPosRankSum=-1.826;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:34,18:0.35:52
chr16	1279732	rs201836020	C	A	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr16	1279816	rs371907673	G	A	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.90;MQRankSum=-1.282;QD=7.29;ReadPosRankSum=1.834;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:4,2:0.33:6
chr16	1279817	rs200692215	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=43.16;MQRankSum=-0.674;QD=10.94;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr16	1291075	rs71380253	T	C	30.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=0.967;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr16	1291188	rs17434400	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:34,30:0.47:64
chr16	1291308	rs201568970	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.899;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.621;MLEAC=1;MLEAF=0.500;MQ=55.74;MQRankSum=-6.282;QD=1.03;ReadPosRankSum=2.034;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:125,12:0.09:137
chr16	1291318	rs151324823	G	C	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-6.647;QD=1.79;ReadPosRankSum=1.426;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:116,15:0.11:131
chr16	1291337	rs200843295	G	A	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=53.48;MQRankSum=-6.480;QD=2.39;ReadPosRankSum=1.869;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:111,16:0.13:127
chr16	1291355	rs112842602	G	C	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=2.421;MLEAC=1;MLEAF=0.500;MQ=52.25;MQRankSum=-6.160;QD=3.43;ReadPosRankSum=2.472;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:92,14:0.13:106
chr16	1291591	rs201278990	G	C	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=7.210;MLEAC=1;MLEAF=0.500;MQ=46.37;MQRankSum=-1.175;QD=6.01;ReadPosRankSum=-4.983;SOR=1.328;set=HC	GT:AD:AF:DP	0/1:151,39:0.21:190
chr16	1291597	rs144979264	C	G	1898.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:118,90:0.43:208
chr16	1291598	rs200334042	G	A	1528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=6.254;MLEAC=1;MLEAF=0.500;MQ=46.46;MQRankSum=-1.535;QD=7.28;ReadPosRankSum=-5.340;SOR=1.190;set=HC	GT:AD:AF:DP	0/1:161,49:0.23:210
chr16	1291608	rs201820654	A	G	1601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.673;MLEAC=1;MLEAF=0.500;MQ=47.01;MQRankSum=-2.137;QD=6.70;ReadPosRankSum=-3.511;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:184,55:0.23:239
chr16	1291623	.	CC	TG	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DP=287;ExcessHet=3.0103;FS=3.243;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.48;MQRankSum=-3.155;QD=7.24;ReadPosRankSum=-0.510;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:221,66:0.23:287
chr16	1291639	rs201223167	A	G	1416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.721;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=5.528;MLEAC=1;MLEAF=0.500;MQ=47.99;MQRankSum=-3.555;QD=3.90;ReadPosRankSum=-0.015;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:264,99:0.27:363
chr16	1291717	rs202230226	T	TG	2718.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.500;MQ=46.70;MQRankSum=-3.332;QD=9.37;ReadPosRankSum=1.886;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:183,107:0.37:290
chr16	1291753	rs369483846	CCTGGGCTCCCT	C	1837.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.243;MLEAC=1;MLEAF=0.500;MQ=43.83;MQRankSum=-0.406;QD=12.50;ReadPosRankSum=0.454;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:95,52:0.35:147
chr16	1291800	rs375717182	G	C	783.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=20.332;MLEAC=1;MLEAF=0.500;MQ=39.55;MQRankSum=2.874;QD=9.68;ReadPosRankSum=-2.822;SOR=0.010;set=HC	GT:AD:AF:DP	0/1:48,33:0.41:81
chr16	1291831	rs202156919	G	C	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.695;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.94;MQRankSum=0.830;QD=10.76;ReadPosRankSum=0.394;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:42,21:0.33:63
chr16	1291850	rs200171211	T	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.310;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.94;MQRankSum=0.852;QD=10.66;ReadPosRankSum=1.781;SOR=0.213;set=HC	GT:AD:AF:DP	0/1:40,19:0.32:59
chr16	1291941	rs201280504	G	A	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.06;MQRankSum=-0.589;QD=6.32;ReadPosRankSum=1.652;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr16	1292021	rs200521594	C	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.75;QD=25.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	1292425	rs67723611	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr16	1306355	rs1800984	T	C	1457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-5.203;QD=6.57;ReadPosRankSum=1.281;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:136,86:0.39:222
chr16	1306410	rs3993979	A	G	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=10.122;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-5.098;QD=5.15;ReadPosRankSum=0.380;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr16	1306439	rs2401941	C	T	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr16	1306802	rs2401930	A	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=20.360;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-5.198;QD=1.84;ReadPosRankSum=1.169;SOR=4.275;set=HC	GT:AD:AF:DP	0/1:68,9:0.12:77
chr16	1306817	rs3993983	G	A	252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.255;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=22.877;MLEAC=1;MLEAF=0.500;MQ=55.69;MQRankSum=-4.411;QD=3.12;ReadPosRankSum=0.295;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:68,13:0.16:81
chr16	1306918	rs74470113	C	T	2317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=4.544;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-7.010;QD=12.73;ReadPosRankSum=1.309;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:117,65:0.36:182
chr16	1306921	rs78324915	G	A	2296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.026;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.606;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-7.236;QD=12.48;ReadPosRankSum=2.183;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:121,63:0.34:184
chr16	1306927	rs79472859	C	T	2203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=3.490;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-7.616;QD=11.30;ReadPosRankSum=3.140;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:131,64:0.33:195
chr16	1306971	rs72775466	A	G	2515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.198;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.081;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-8.714;QD=10.35;ReadPosRankSum=0.815;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:170,73:0.30:243
chr16	1306973	rs79313952	A	G	2512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.076;MLEAC=1;MLEAF=0.500;MQ=58.89;MQRankSum=-8.784;QD=10.21;ReadPosRankSum=0.814;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:173,73:0.30:246
chr16	1306986	rs72775467	C	T	2267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.096;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=1.737;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-9.469;QD=9.00;ReadPosRankSum=0.815;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:185,67:0.27:252
chr16	1323781	rs1610294	T	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:81,117:0.59:198
chr16	1358608	rs148430996	ATGAGGGAGGGAGGGAATTAG	A	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.26;ReadPosRankSum=0.400;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:21,9:0.30:30
chr16	1358917	rs11644706	A	T	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,10:0.27:37
chr16	1358976	rs11645809	T	A	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr16	1364140	rs9941160	T	C	2015.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:200,111:0.36:311
chr16	1364281	rs4984806	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:116,57:0.33:173
chr16	1370303	rs909916	T	C	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-1.057;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:81,46:0.36:127
chr16	1370309	rs909917	C	G	1578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=-0.115;SOR=1.146;set=HC	GT:AD:AF:DP	0/1:82,45:0.35:127
chr16	1370597	rs4017786	G	C	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:117,61:0.34:178
chr16	1370614	rs8063770	C	G	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:81,49:0.38:130
chr16	1370630	rs8043720	A	G	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,32:0.35:91
chr16	1374656	rs761060	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	1374818	rs8063	A	G	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:260,169:0.39:429
chr16	1388416	rs13338616	T	C	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:37,25:0.40:62
chr16	1388888	rs7197416	C	T	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:260,146:0.36:406
chr16	1389153	rs7202563	C	A	3828.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:351,211:0.38:562
chr16	1389751	rs113792347	C	G	3062.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:238,161:0.40:399
chr16	1391221	rs34468534	G	A	4328.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:318,216:0.40:534
chr16	1391871	rs2369699	C	G	2324.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:208,119:0.36:327
chr16	1392877	rs742458	T	C	1568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=1.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=1.110;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:180,94:0.34:274
chr16	1394507	rs1132356	A	C	1566.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:226,92:0.29:318
chr16	1394551	rs11248872	A	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:226,107:0.32:333
chr16	1394741	rs151251565	AGCCAACAGG	A	6794.73	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:358,192:0.35:550
chr16	1395169	rs35903896	C	T	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:55,107:0.66:162
chr16	1395400	rs71145423	CTG	C	3315.73	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr16	1397518	rs34339539	G	GC	2213.73	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:145,90:0.38:235
chr16	1398077	rs34766513	C	CCT	11854.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.103;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=1.153;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=3.347;QD=12.69;ReadPosRankSum=-0.053;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:607,327:0.35:934
chr16	1407792	rs4984644	T	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr16	1407809	rs4984820	T	C	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.021;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=1.087;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr16	1417408	rs4984823	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:50,45:0.47:95
chr16	1417558	.	G	GCCCT	64.73	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,3:0.27:11
chr16	1419947	rs11248874	A	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:110,51:0.32:161
chr16	1433766	rs12918814	T	C	2560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.324;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.555;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.599;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:319,154:0.33:473
chr16	1442931	.	G	A	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855;ClippingRankSum=0.000;DP=375;ExcessHet=3.0103;FS=0.902;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.237;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:279,95:0.25:374
chr16	1447278	rs61738727	A	G	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.165;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.024;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:46,21:0.31:67
chr16	1451519	rs761068	G	A	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	1455900	rs8044833	C	T	4453.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:390,238:0.38:628
chr16	1458381	rs1609562	G	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=0.906;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:27,11:0.29:38
chr16	1458561	rs2179534	T	C	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr16	1464636	rs111437424	A	C	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.703;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=-0.522;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:56,41:0.42:97
chr16	1476465	rs4984834	A	G	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	1484338	rs7192100	A	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:79,52:0.40:131
chr16	1484392	rs12598718	G	C	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:130,82:0.39:212
chr16	1484473	rs7192331	A	G	1597.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:198,96:0.33:294
chr16	1486352	rs909974	T	C	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	1486462	rs35583599	C	T	10051.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:242,466:0.66:708
chr16	1486875	rs3751894	C	T	9466.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	1486926	rs3751895	C	G	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	1487975	rs4984839	A	G	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr16	1488015	rs4984840	A	G	16263.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr16	1488039	rs4984841	C	T	19868.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr16	1488141	rs12925639	C	T	7572.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:157,333:0.68:490
chr16	1488224	rs4984843	T	C	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr16	1488646	rs8054054	A	G	9098.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr16	1489234	rs45514093	G	A	253.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr16	1492245	rs36105643	C	T	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:24,17:0.41:41
chr16	1492307	rs35956274	A	G	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr16	1492413	rs71380262	T	C	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:73,94:0.56:167
chr16	1492660	rs760993	T	C	1621.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	1493037	rs79206326	G	T	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:76,113:0.60:189
chr16	1493151	rs11641300	C	T	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr16	1493491	rs12929054	T	G	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	1493662	rs35181211	G	A	3254.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:43,142:0.77:185
chr16	1493909	rs34470360	C	T	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:119,242:0.67:361
chr16	1494075	rs35836184	A	T	3244.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:92,141:0.61:233
chr16	1494371	rs35254247	CT	C	3475.73	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:57,112:0.66:169
chr16	1496613	rs11860968	T	C	7117.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:172,317:0.65:489
chr16	1497125	rs28666958	A	G	3105.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:76,136:0.64:212
chr16	1497640	rs35021217	G	A	4757.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:148,231:0.61:379
chr16	1498270	rs35462840	A	G	3071.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:90,145:0.62:235
chr16	1498510	rs35308339	T	C	3421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.905;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.62;ReadPosRankSum=-0.659;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:44,95:0.68:139
chr16	1498520	rs12597739	A	G	3147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.23;ReadPosRankSum=-0.570;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:39,81:0.68:120
chr16	1498572	rs17135338	T	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr16	1498775	rs35915213	C	T	4142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.62;ReadPosRankSum=2.298;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:46,104:0.69:150
chr16	1498775	.	CGG	TGA	2803	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=7;HapScore=1;MGOF=2;MMLQ=22;MQ=60.0;NF=44;NR=46;PP=2803;QD=20;SC=GCCCTGCGGGCGGGGCGGGAA;SbPval=0.52;Source=Platypus;TC=136;TCF=66;TCR=70;TR=90;WE=1498785;WS=1498765;set=Platypus	GT:AD:AF:DP	0/1:46,90:0.66:136
chr16	1498777	rs35939214	G	A	4142.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.99;ReadPosRankSum=2.071;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:45,103:0.70:148
chr16	1498951	rs12932780	C	T	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:64,101:0.61:165
chr16	1499408	rs115335595	G	A	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:62,144:0.70:206
chr16	1500501	rs117461525	C	T	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr16	1502857	rs12926089	C	T	11994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.145;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.43;ReadPosRankSum=0.113;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:186,305:0.62:491
chr16	1502864	rs12926669	A	G	11976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=1.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.64;ReadPosRankSum=-0.384;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:182,304:0.63:486
chr16	1503879	rs2235579	T	A	11488.77	.	AC=1;AF=0.500;AN=2;DB;DP=832;set=Intersection	GT:AD:AF:DP	0/1:306,523:0.63:829
chr16	1504017	rs4786337	A	G	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:64,57:0.47:121
chr16	1504437	rs12935737	C	T	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:81,148:0.65:229
chr16	1505558	rs12921745	G	A	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr16	1505892	rs9923569	G	A	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr16	1506011	rs34252668	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,24:0.75:32
chr16	1506034	rs35286517	C	A	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr16	1506318	rs35331938	A	G	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr16	1507238	rs12933110	A	G	7653.77	.	AC=1;AF=0.500;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	0/1:211,363:0.63:574
chr16	1507276	rs61743590	C	T	8307.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:241,392:0.62:633
chr16	1507778	rs9922189	T	C	25062.77	.	AC=2;AF=1.00;AN=2;DB;DP=976;set=Intersection	GT:AD:AF:DP	1/1:1,972:1.00:973
chr16	1508988	rs35341445	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:19,21:0.53:40
chr16	1509123	rs12923538	G	A	4293.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:100,202:0.67:302
chr16	1509273	.	A	AGGAGAGCAGCAGACACGTCGGGGCCTCAGGGAAGG	835.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.942;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=4.576;MLEAC=1;MLEAF=0.500;MQ=60.97;MQRankSum=3.516;QD=15.77;ReadPosRankSum=-0.584;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:30,23:0.43:53
chr16	1510538	rs35280276	A	G	5104.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:149,244:0.62:393
chr16	1510567	rs2072950	T	G	7604.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	1510634	rs34682071	G	A	2383.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:48,90:0.65:138
chr16	1510707	rs35436553	C	G	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:68,135:0.67:203
chr16	1511372	rs12926202	C	T	219.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	1511552	rs2744994	G	T	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	1511758	rs11248878	A	G	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:22,69:0.76:91
chr16	1511811	rs12926972	C	T	845.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr16	1515162	rs2235580	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:18,10:0.36:28
chr16	1515415	rs12927645	G	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:30,64:0.68:94
chr16	1515503	rs2744997	G	A	360.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	1524261	rs28550432	G	T	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:38,89:0.70:127
chr16	1524774	rs150643839	G	GGCGC	531.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr16	1524850	rs3751884	A	G	1996.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:64,96:0.60:160
chr16	1536535	rs2745098	C	T	4468.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:112,196:0.64:308
chr16	1536677	rs12928073	C	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chr16	1537283	rs36032546	G	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr16	1537455	rs2667673	T	C	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,79:0.60:132
chr16	1537588	rs12932893	C	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:53,78:0.60:131
chr16	1537839	rs2745101	G	A	5934.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:191,277:0.59:468
chr16	1538363	rs1040499	C	A	6999.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:200,314:0.61:514
chr16	1538433	rs2745102	A	G	10538.77	.	AC=1;AF=0.500;AN=2;DB;DP=870;set=Intersection	GT:AD:AF:DP	0/1:370,497:0.57:867
chr16	1538464	rs2745103	C	T	10796.77	.	AC=1;AF=0.500;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	0/1:389,509:0.57:898
chr16	1538560	rs34993742	G	A	3304.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:93,152:0.62:245
chr16	1538692	rs2667675	A	C	2828.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:80,125:0.61:205
chr16	1544301	rs2667660	GA	CG	14203.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;JOINED;set=Intersection	GT:AD:AF:DP	0/1:247,359:0.59:606
chr16	1545448	rs2235624	A	G	3521.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	1547220	rs2235630	C	T	681.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	1550409	rs147777945	C	T	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:114,66:0.37:180
chr16	1551826	rs72779276	C	G	838.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:55,36:0.40:91
chr16	1557792	.	TGA	T	88.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.463;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.409;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:76,12:0.14:88
chr16	1557794	rs12927760	A	T	1844.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.064;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=-0.708;SOR=1.349;set=HC	GT:AD:AF:DP	0/1:12,76:0.86:88
chr16	1573810	rs2745176	A	G	19596.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,758:1.00:758
chr16	1633446	rs147086637	A	C	6974.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:184,323:0.64:507
chr16	1642026	rs116859784	G	A	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr16	1691213	rs373258576	C	T	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:85,127:0.60:212
chr16	1706313	.	A	G	2239.77	.	AC=1;AF=0.500;AN=2;DP=361;set=Intersection	GT:AD:AF:DP	0/1:236,124:0.34:360
chr16	1706435	rs61739874	C	T	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	0/1:572,263:0.31:835
chr16	1716010	rs8058190	A	C	2118.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:58,91:0.61:149
chr16	1718120	rs376251227	C	T	3318.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.310;ClippingRankSum=0.000;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=2.125;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:328,182:0.36:510
chr16	1728147	rs113571946	A	G	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	1748906	rs138975908	C	T	2888.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:283,153:0.35:436
chr16	1810116	rs57876690	C	A	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr16	1812972	rs2294616	G	C	10650.77	.	AC=1;AF=0.500;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	0/1:310,509:0.62:819
chr16	1814391	rs2294618	T	C	1730.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:36,80:0.69:116
chr16	1815337	rs2917508	G	A	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,26:0.76:34
chr16	1815946	rs2575371	C	T	3931.77	.	AC=1;AF=0.500;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	0/1:451,217:0.32:668
chr16	1817431	rs2575369	C	T	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr16	1817754	rs2076427	A	G	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:195,88:0.31:283
chr16	1817768	rs2076428	T	G	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.434;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=1.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=1.891;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:191,77:0.29:268
chr16	1817935	rs2076429	A	C	2245.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:196,121:0.38:317
chr16	1818152	rs2076430	C	T	2994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;ClippingRankSum=0.000;DB;DP=519;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.829;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:352,166:0.32:518
chr16	1818152	.	CT	TC	1841	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=81;NR=69;PP=1841;QD=12.6297858324;SC=GCCTCTCCCACTCTCCACCTG;SbPval=0.44;Source=Platypus;TC=493;TCF=276;TCR=217;TR=150;WE=1818161;WS=1818142;set=Platypus	GT:AD:AF:DP	0/1:343,150:0.30:493
chr16	1818153	rs2437734	T	C	16947.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr16	1818503	rs2076431	G	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=-1.274;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:182,57:0.24:239
chr16	1818680	rs2072989	G	C	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:179,114:0.39:293
chr16	1820992	rs11890	T	A	4669.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:463,250:0.35:713
chr16	1822159	rs2269123	T	C	1749.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chr16	1822797	rs34595082	C	CACCT	681.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,19:0.42:45
chr16	1822947	rs1076695	C	G	726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.189;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.525;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:138,45:0.25:183
chr16	1823024	rs11552431	G	T	4843.77	.	AC=1;AF=0.500;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	0/1:105,215:0.67:320
chr16	1823444	rs761065	C	G	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,44:0.34:130
chr16	1824115	rs2076433	G	C	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr16	1825768	rs2745169	A	C	2942.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:288,164:0.36:452
chr16	1825774	rs13339350	T	C	6114.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:165,271:0.62:436
chr16	1826023	rs9929680	G	A	5389.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:130,244:0.65:374
chr16	1826302	rs2437732	G	T	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:224,113:0.34:337
chr16	1826377	rs2235636	A	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	1827522	rs13332165	T	G	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr16	1827700	rs140938498	C	G	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.117;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=0.735;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:69,22:0.24:91
chr16	1827836	rs1178432	T	C	5460.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	1827857	rs138705764	C	T	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:135,85:0.39:220
chr16	1836709	rs2575351	G	C	7950.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr16	1836796	rs2235648	C	A	1484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=2.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.562;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:249,96:0.28:345
chr16	1837900	rs344358	T	C	7380.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:2,280:0.99:282
chr16	1838037	rs2272977	C	G	3989.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:109,188:0.63:297
chr16	1838479	rs28534374	A	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chr16	1838640	rs344359	T	C	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.771;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	1838836	rs1065656	C	G	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,53:0.57:93
chr16	1842209	rs3751893	A	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr16	1843672	rs3817902	T	C	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.931;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:85,57:0.40:142
chr16	1844781	rs2256923	A	G	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr16	1859150	rs1057071	G	A	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.09;SOR=1.461;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	1859153	rs1057070	T	C	7961.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	1859432	rs1628812	G	C	7025.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	1859476	rs1629513	G	A	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	1859482	rs1629534	A	C	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=2.163;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	1859730	rs2745199	G	A	4176.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	1859850	rs1742442	A	G	8059.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	1870037	rs144480059	TGGGCTGCCTGCTGAGCTGAGG	T	1477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=61.46;MQRankSum=9.341;QD=7.43;ReadPosRankSum=1.365;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:119,80:0.40:199
chr16	1872160	rs238680	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,34:0.30:115
chr16	1872479	rs238679	A	G	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:57,27:0.32:84
chr16	1873087	rs104843	C	A	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr16	1876949	rs7188401	G	C	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:90,148:0.62:238
chr16	1877698	rs3743852	C	G	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:103,243:0.70:346
chr16	1877913	rs13166	C	G	3225.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:80,146:0.65:226
chr16	1884501	rs171162	A	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,16:0.84:19
chr16	1894912	rs9806826	C	T	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=1.315;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:44,70:0.61:114
chr16	1902889	rs1617255	T	C	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	1902901	rs7187251	A	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	1904239	rs10500322	T	A	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:95,40:0.30:135
chr16	1907652	rs428123	G	A	3835.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	1907701	rs408286	AG	CA	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	1907946	rs411193	C	T	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	1910219	rs391288	A	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	1910373	rs433268	C	G	5330.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	1912021	rs1657125	T	G	4254.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:119,205:0.63:324
chr16	1912139	rs380846	T	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	1912205	rs1657126	T	C	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr16	1915886	rs58422887	T	A	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	1917998	rs1742444	T	C	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	1918094	rs78268797	T	G	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:67,103:0.61:170
chr16	1918125	rs1742446	T	G	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	1961674	rs337285	G	C	7344.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	1962046	rs1742399	CG	TA	10079.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;JOINED;set=Intersection	GT:AD:AF:DP	0/1:190,254:0.57:444
chr16	1962132	rs8055325	G	A	5339.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:159,238:0.60:397
chr16	1968338	rs199930198	T	TC	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	1990994	rs13331553	T	C	12962.77	.	AC=1;AF=0.500;AN=2;DB;DP=952;set=Intersection	GT:AD:AF:DP	0/1:357,592:0.62:949
chr16	1991014	rs111845910	G	A	12550.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:354,579:0.62:933
chr16	1994743	rs2754179	G	A	4540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=5.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.68;ReadPosRankSum=1.645;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:44,109:0.71:153
chr16	1994749	rs2531332	A	C	4711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=4.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.55;ReadPosRankSum=0.726;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:48,123:0.72:171
chr16	1994931	rs61276345	C	CAAGAG	5370.73	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:86,135:0.61:221
chr16	1994980	rs11640479	G	T	1430.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,56:0.61:92
chr16	1994992	rs60819893	G	GC	919.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr16	1995997	rs113439442	C	T	5483.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:142,238:0.63:380
chr16	1996075	rs1003904	G	A	2102.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:26,76:0.75:102
chr16	1996535	rs35725974	C	CA	2359.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:42,73:0.63:115
chr16	1997113	rs45467097	G	A	5879.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:132,257:0.66:389
chr16	2004718	rs2815301	T	C	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	2011126	rs758335	A	G	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	2012453	rs140724499	C	T	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:45,50:0.53:95
chr16	2014031	rs6366	C	G	1226.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	2014283	rs2286466	A	G	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.87;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	2015121	rs1133099	C	T	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	2015432	rs1054002	C	T	4082.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:407,231:0.36:638
chr16	2015477	rs1054003	C	T	9049.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	2022074	rs28396225	C	T	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	2024131	rs3743851	T	C	10968.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:1,414:1.00:415
chr16	2025206	rs8053843	A	C	8121.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	2025411	rs12925447	G	C	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	2025602	rs2230086	A	G	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	2025765	rs12927588	A	G	16039.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,593:1.00:593
chr16	2025958	rs35795901	G	A	20963.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr16	2026177	rs36118556	T	C	10544.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	2026292	rs17604	T	C	5383.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	2026378	rs35958398	G	A	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	2026891	rs17605	T	C	12909.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr16	2026986	rs67220861	G	A	17703.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr16	2027291	rs66471978	T	C	16846.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,657:1.00:657
chr16	2027313	rs66748999	T	C	16058.77	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr16	2027955	rs11859495	A	G	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	2028402	rs8460	A	C	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	2028677	rs34968293	A	G	14466.77	.	AC=2;AF=1.00;AN=2;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,560:1.00:560
chr16	2028832	rs35637038	T	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:1,86:0.99:87
chr16	2029152	rs12927376	G	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=2.242;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	2029412	rs12928922	C	A	14317.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr16	2029522	rs201565784	C	T	6751.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:172,314:0.65:486
chr16	2029723	rs12929367	C	T	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	2029788	rs12933767	T	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	2034661	rs2075812	T	C	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	2035907	rs36041021	T	C	11338.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	2035999	rs1802834	C	T	7816.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	2048826	rs2240691	C	G	4212.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr16	2049640	rs2286469	A	G	6194.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	2050346	rs3743846	A	G	17098.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr16	2050951	rs8050923	TA	CG	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	2052340	rs61746612	G	A	7454.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	2053742	rs72766632	A	C	1865.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	2053794	rs17653536	G	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	2059621	rs11366527	GC	G	7099.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	2059674	rs71384660	T	C	7263.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;QD=39.05;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	2059698	rs71384661	T	G	6038.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=45.75;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	2059708	rs71384662	T	G	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=48.77;SOR=1.015;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	2059710	rs71384663	T	G	5011.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=46.41;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	2059736	rs71148116	CG	C	2371.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.94;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	2059762	rs71148117	GC	G	1429.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	2059778	rs71148118	GT	G	1376.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	2059782	rs71384664	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	2059790	rs968417	A	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.68;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	2059939	rs968418	A	C	7980.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	2059955	rs62038790	A	G	10225.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr16	2070200	rs11248906	G	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.073;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:64,35:0.35:99
chr16	2070327	rs3217040	G	GA	1006.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr16	2070433	rs12921264	G	A	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:162,96:0.37:258
chr16	2070568	rs2286472	A	C	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=725;set=Intersection	GT:AD:AF:DP	0/1:452,270:0.37:722
chr16	2076931	rs113304510	C	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.566;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.64;ReadPosRankSum=0.765;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr16	2083358	rs11544570	A	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr16	2087460	rs12447809	G	T	786.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:94,44:0.32:138
chr16	2087658	rs12445258	A	G	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:199,144:0.42:343
chr16	2087785	rs34165865	T	C	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:87,69:0.44:156
chr16	2088222	rs369719523	CAG	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.952;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr16	2088312	rs11876	C	T	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:80,35:0.30:115
chr16	2088401	rs150212258	AC	A	545.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr16	2088405	rs149481694	CCCCCCTTCCCCT	C	2171.73	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr16	2100599	.	CT	C	223.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.316;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=3.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.14;ReadPosRankSum=-0.046;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:26,28:0.52:54
chr16	2103686	rs144712953	T	C	1967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.104;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:297,126:0.30:423
chr16	2105335	rs2516734	C	G	125.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.161;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=-0.556;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	2105400	rs1800720	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:45,18:0.29:63
chr16	2107322	rs78160478	G	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chr16	2110571	rs2074968	C	G	2801.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	2111779	rs17135764	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	2115481	rs45477195	C	T	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.373;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-0.690;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:107,42:0.28:149
chr16	2120402	rs7187438	T	C	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:214,109:0.34:323
chr16	2126596	rs137854204	G	GC	4739.73	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:99,155:0.61:254
chr16	2127819	.	A	C	155.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr16	2201270	rs36234	G	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr16	2203456	rs26931	T	C	8209.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	2222286	rs11547311	C	T	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:239,125:0.34:364
chr16	2233565	rs889495	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr16	2237549	rs26835	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	2239402	rs27381	C	T	8646.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:194,383:0.66:577
chr16	2255804	rs3214648	TG	T	1508.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:37,63:0.63:100
chr16	2255807	rs112805476	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:66,38:0.37:104
chr16	2256047	rs3217423	AC	A	3960.73	.	AC=1;AF=0.500;AN=2;DB;DP=207;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:63,135:0.68:198
chr16	2256326	rs27699	C	T	8024.77	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:210,359:0.63:569
chr16	2256461	rs26863	C	G	6681.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:197,299:0.60:496
chr16	2257105	rs26862	C	G	4794.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:103,217:0.68:320
chr16	2259766	rs26858	A	G	998.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr16	2259865	rs25852	C	G	499.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr16	2260567	rs26857	C	T	5120.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:116,232:0.67:348
chr16	2260612	rs26856	T	C	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	2260935	rs26855	G	A	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr16	2282256	rs26839	G	A	8438.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr16	2285357	rs26840	C	T	7005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.731;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=4.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=-0.107;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:191,318:0.62:509
chr16	2288224	rs27620	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:23,49:0.68:72
chr16	2294549	rs145543160	C	T	2283.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:69,113:0.62:182
chr16	2301520	rs11541763	G	C	1716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.195;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.247;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:200,99:0.33:299
chr16	2313343	rs40342	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:128,78:0.38:206
chr16	2314401	rs161431	G	A	1355.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:128,74:0.37:202
chr16	2317777	rs11646649	C	G	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	2317777	.	CT	GG	127	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=1;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=3;NR=0;PP=127;QD=60.1559582874;SC=GCGCTCCCCGCTGGTCTGAGT;SbPval=1.0;Source=Platypus;TC=3;TCF=3;TCR=0;TR=3;WE=2317786;WS=2317767;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	2317778	rs11642797	T	G	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	2318170	rs143373048	TA	T	7580.73	.	AC=1;AF=0.500;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	0/1:150,251:0.63:401
chr16	2318327	rs161430	C	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:38,17:0.31:55
chr16	2320692	.	CAGGGCTTCATGG	C	394.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr16	2320803	rs8058021	G	T	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.137;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.11;MQRankSum=-1.691;QD=3.52;ReadPosRankSum=1.169;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr16	2320810	rs72766672	C	T	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr16	2320829	rs8058038	G	T	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-0.674;QD=14.79;ReadPosRankSum=-0.000;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:3,3:0.50:6
chr16	2320838	rs8058046	G	C	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.12;MQRankSum=-0.431;QD=15.96;ReadPosRankSum=-0.524;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	2328790	rs150928	G	A	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,43:0.66:65
chr16	2331430	rs149532	A	G	6255.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:1,239:1.00:240
chr16	2334554	rs1183064	A	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr16	2338363	rs313908	C	G	1863.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:33,80:0.71:113
chr16	2339714	rs323017	T	C	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.339;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:46,50:0.52:96
chr16	2348528	rs323043	G	C	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr16	2349371	rs170447	T	C	5335.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	2358313	rs323074	C	T	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr16	2367336	rs13332514	G	A	5848.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:168,271:0.62:439
chr16	2367424	rs13332547	G	A	2570.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:55,106:0.66:161
chr16	2367509	rs323066	G	T	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:102,59:0.37:161
chr16	2369485	rs5815117	C	CA,CAA	568.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=0.200;SOR=0.495;set=HC	GT:AD:AF:DP	1/2:6,20,12:0.53,0.32:38
chr16	2373786	rs323060	C	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	2375961	rs46725	C	T	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	2378564	rs373769747	G	C	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:31,53:0.63:84
chr16	2479712	rs13337091	A	C	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	2485620	rs146413013	ACACACACACATATATATG	A	258.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.95;ReadPosRankSum=-1.501;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr16	2485622	.	ACACACACATATATATG	A	435.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=3.909;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.76;ReadPosRankSum=2.705;SOR=1.634;set=HC	GT:AD:AF:DP	0/1:11,15:0.58:26
chr16	2485665	rs147350588	CACATATATATATATATAT	C	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.44;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:2,29:0.94:31
chr16	2485896	rs12928789	A	G	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	2486998	rs12921396	A	T	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	2487012	rs34456414	C	CT	3393.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	2488211	rs12926008	T	C	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	2489533	rs28647184	T	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	2495488	.	T	A	2164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DP=499;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-2.647;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:358,137:0.28:495
chr16	2498828	rs28417759	A	G	7702.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr16	2498849	rs28670436	G	A	9851.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,394:1.00:394
chr16	2499011	rs8060813	T	C	5804.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=2.060;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	2499786	.	G	GTCCCCTCCA	7789.73	.	AC=2;AF=1.00;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	2510603	rs4786284	C	T	3961.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	2512523	rs3810794	G	A	2695.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:71,122:0.63:193
chr16	2514286	rs149139826	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:38,53:0.58:91
chr16	2607730	rs200979773	C	T	87.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=17.56;ReadPosRankSum=-0.842;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	2608001	rs77373540	G	A	5566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=544;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-1.535;QD=10.25;ReadPosRankSum=0.713;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:267,276:0.51:543
chr16	2645965	rs1005273	G	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr16	2747857	rs3094475	C	T	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	2748063	rs3094474	C	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr16	2749195	rs3094473	A	G	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.371;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:393,168:0.30:561
chr16	2802684	rs2240146	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.14;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	2808363	rs3094778	C	T	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	2810623	rs2285879	T	G	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	2812890	rs2240141	A	G	7414.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	2812939	rs2240140	C	A	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr16	2814162	rs3094775	G	A	5599.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	2815237	rs3094773	A	C	8104.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	2818161	rs2301802	T	C	7118.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr16	2818704	rs3094792	T	G	12813.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr16	2821573	rs8017	C	T	959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=2.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=0.370;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:133,56:0.30:189
chr16	2825594	rs3094774	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	2834711	rs45570838	G	A	3576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.50;ReadPosRankSum=-0.324;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:97,168:0.63:265
chr16	2834826	rs12931183	A	G	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	2835189	rs12599918	G	A	5753.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	2836027	rs7195287	T	G	9102.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr16	2836271	rs11643898	C	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	2837592	rs34341809	T	G	13125.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr16	2837603	rs11076829	C	T	11746.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	2849407	rs118024870	C	T	4974.77	.	AC=1;AF=0.500;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	0/1:574,285:0.33:859
chr16	2867450	rs71386691	G	C	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=3.192;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=0.179;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr16	2867530	rs111876704	GA	G	86.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr16	2871121	rs11076844	T	C	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	2871555	rs10641	G	A	6326.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr16	2880614	rs2190809	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	2880870	rs2240614	G	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	2882197	rs12373	G	T	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	2891635	rs11860210	C	G	4817.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:133,219:0.62:352
chr16	2903047	rs1054912	G	C	4364.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	2903068	rs113609771	A	C	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:60,101:0.63:161
chr16	2903081	rs3743944	G	A	4996.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:85,144:0.63:229
chr16	2903850	rs112285893	G	C	1955.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr16	2906934	rs732532	G	A	1830.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:43,84:0.66:127
chr16	2949248	rs7281	T	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=26.21;SOR=1.505;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	2949269	.	C	CT	274	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.035;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.58;MQRankSum=0.903;QD=11.91;ReadPosRankSum=0.203;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:4,19:0.83:23
chr16	2973171	rs11649122	C	G	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:64,45:0.41:109
chr16	2973249	rs11642228	T	A	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr16	2980272	rs3743949	A	G	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:64,137:0.68:201
chr16	2983138	rs2074363	C	T	4347.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:94,197:0.68:291
chr16	2983483	rs2074362	C	G	3131.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:65,136:0.68:201
chr16	2986233	rs9933986	G	T	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr16	2986266	rs9921749	C	A	3135.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:39,78:0.67:117
chr16	2986289	rs9921808	C	G	3727.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,105:0.68:155
chr16	2986323	rs9928222	T	C	4089.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:105,180:0.63:285
chr16	2986840	rs2074358	G	C	5794.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:134,254:0.65:388
chr16	2987002	rs2074357	C	T	2347.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:43,102:0.70:145
chr16	2987074	rs140936158	G	GCTCTGAGAGCTGGTGTCCGCTGCTCCTCCCCTCCCATTTCTC	545.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=4.237;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=0.236;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr16	2998629	rs8050688	T	G	2689.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr16	3016885	rs58462745	A	G	6555.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	3017124	rs11641195	C	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:101,70:0.41:171
chr16	3021116	rs4786365	T	C	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.872;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=6.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=-2.148;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:162,93:0.36:255
chr16	3024188	rs2074528	T	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:120,103:0.46:223
chr16	3063264	rs2227269	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.274;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.834;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:133,43:0.24:176
chr16	3065924	rs2269911	G	A	3409.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:376,192:0.34:568
chr16	3071420	rs2232798	T	A	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.268;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=2.054;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:54,23:0.30:77
chr16	3073240	rs10508	G	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.505;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:58,24:0.29:82
chr16	3074426	rs56708449	G	C	2234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=2.131;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:280,136:0.33:416
chr16	3075999	rs2245000	C	G	3040.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:316,158:0.33:474
chr16	3077710	.	CTT	C	700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.370;QD=8.15;ReadPosRankSum=-0.296;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:44,42:0.49:86
chr16	3078165	rs12448103	A	G	1329.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:126,77:0.38:203
chr16	3078544	rs2079244	T	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr16	3078616	rs5815143	CATT	C	2153.73	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:134,64:0.32:198
chr16	3097074	rs909408	C	T	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr16	3097286	rs116852132	G	A	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chr16	3097568	rs3743937	C	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:92,48:0.34:140
chr16	3097596	rs3743936	T	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:49,33:0.40:82
chr16	3106026	rs3888711	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=7.701;MLEAC=1;MLEAF=0.500;MQ=57.24;MQRankSum=-0.416;QD=11.99;ReadPosRankSum=-0.661;SOR=1.250;set=HC	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	3106994	rs1064948	A	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:24,49:0.67:73
chr16	3117272	rs140230160	CTGTGTG	C,CTG	1229.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;set=Intersection	GT:AF:DP	1/2:0.39,0.61:33
chr16	3117354	rs1555001	T	A	1526.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:22,65:0.75:87
chr16	3118865	rs12934561	T	C	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr16	3119167	rs34184287	T	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.049;MLEAC=1;MLEAF=0.500;MQ=50.27;MQRankSum=-1.301;QD=2.88;ReadPosRankSum=-1.306;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr16	3119297	rs71818662	C	CG	926.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=4.157;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-15.521;QD=3.58;ReadPosRankSum=2.841;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:220,39:0.15:259
chr16	3119304	rs2981599	A	G	923.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=4.138;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-14.897;QD=3.49;ReadPosRankSum=1.526;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:226,39:0.15:265
chr16	3131937	rs191732434	A	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=6.367;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-10.720;QD=1.10;ReadPosRankSum=-0.796;SOR=1.381;set=HC	GT:AD:AF:DP	0/1:130,12:0.08:142
chr16	3131940	rs58826170	C	CGG	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.626;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=10.305;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-10.630;QD=1.01;ReadPosRankSum=-1.563;SOR=1.720;set=HC	GT:AD:AF:DP	0/1:131,14:0.10:145
chr16	3141713	rs12935803	G	C	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.753;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.01;ReadPosRankSum=-0.101;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:74,47:0.39:121
chr16	3142463	rs3810807	A	G	2785.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:230,142:0.38:372
chr16	3166618	rs4785928	C	G	237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=8.243;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-0.044;SOR=2.732;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr16	3191356	rs2735537	G	A	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:70,29:0.29:99
chr16	3197623	rs2735507	C	T	1275.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:85,61:0.42:146
chr16	3199118	rs2238385	C	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:56,34:0.38:90
chr16	3199713	rs2735514	C	T	2613.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:199,137:0.41:336
chr16	3254470	rs1834026	T	C	14095.77	.	AC=1;AF=0.500;AN=2;DB;DP=888;set=Intersection	GT:AD:AF:DP	0/1:255,631:0.71:886
chr16	3254972	rs2075851	T	C	7421.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;MQ=59.94;set=Intersection	GT:AD:AF:DP	0/1:137,328:0.71:465
chr16	3266071	rs2550401	A	G	9601.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:275,427:0.61:702
chr16	3266552	rs2741916	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr16	3282605	rs2075852	T	C	5059.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:143,243:0.63:386
chr16	3294154	rs3974658	GT	G	2018.73	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:70,128:0.65:198
chr16	3296429	rs224204	G	A	1027.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.128;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.469;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.57;ReadPosRankSum=-1.770;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:18,48:0.73:66
chr16	3296616	rs224205	C	T	1695.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:66,82:0.55:148
chr16	3297073	rs224206	A	G	14913.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr16	3297175	rs224207	T	C	21813.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.11;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr16	3297181	rs224208	C	T	20585.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr16	3298642	rs224211	G	A	3401.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	3298865	rs224212	T	C	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	3299749	rs224213	G	A	10464.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr16	3338343	rs188761	G	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr16	3405875	rs1009429	T	C	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	3405994	rs1228348	A	G	3809.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	3406387	rs1218763	C	G	11503.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	3433714	.	G	GA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=3.604;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=3.472;QD=1.12;ReadPosRankSum=-0.367;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:70,18:0.20:88
chr16	3437268	rs11648996	G	A	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	3438865	rs11643983	G	A	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	3440390	rs4786412	C	T	6999.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	3440394	rs27237	A	G	6910.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.02;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	3441639	rs78047718	G	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	3441697	rs7204842	A	C,AC	4780.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=40.17;SOR=1.202;set=HC	GT:AD:AF:DP	1/2:0,74,45:0.62,0.38:119
chr16	3444157	rs12448573	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	3445112	rs11077333	C	T	3879.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	3452193	rs37811	T	G	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	3452453	rs377727247	C	CTT	2936.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=1.850;QD=21.28;ReadPosRankSum=-1.602;SOR=0.577;set=HC	GT:AD:AF:DP	1/1:11,127:0.92:138
chr16	3455079	rs37813	T	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	3458219	rs37819	C	T	444.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	3490922	rs2270494	G	C	1532.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	3533577	rs1137454	C	G	6010.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	3534892	rs13740	G	A	21543.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,788:1.00:788
chr16	3535116	rs4785936	T	C	7530.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	3535540	rs2240075	G	A	13236.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:2,506:1.00:508
chr16	3558262	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.455;QD=3.34;ReadPosRankSum=0.027;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr16	3602227	rs56070390	AG	A	5475.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr16	3639139	rs3810812	A	G	3913.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:107,179:0.63:286
chr16	3705819	rs181314680	C	G	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:37,33:0.47:70
chr16	3706337	.	C	T	20	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=0;NR=4;PP=20;QD=13.6928031368;SC=CCCAAGGTCCCGGACCAATGG;SbPval=1.0;Source=Platypus;TC=22;TCF=7;TCR=15;TR=4;WE=3706345;WS=3706327;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chr16	3706668	rs34923865	A	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:120,68:0.36:188
chr16	3707409	rs1799892	G	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:105,66:0.39:171
chr16	3707747	rs1053874	G	A	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:136,70:0.34:206
chr16	3721773	rs1136948	G	C	4499.77	.	AC=1;AF=0.500;AN=2;DB;DP=743;set=Intersection	GT:AD:AF:DP	0/1:493,249:0.34:742
chr16	3726160	rs8050400	A	G	4981.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	3738887	rs2072379	C	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:25,23:0.48:48
chr16	3808052	rs75459669	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.61;ReadPosRankSum=-1.993;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chr16	3811556	rs886528	A	G	5832.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:141,268:0.66:409
chr16	4015729	rs879620	C	T	2630.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	4016676	rs2230742	A	G	10529.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr16	4027423	rs2072346	C	T	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	4027605	rs2240735	C	T	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	4027688	rs2531990	T	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	4027749	rs2601774	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	4038952	rs3730126	C	T	5608.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:147,259:0.64:406
chr16	4039141	rs2072341	A	G	7330.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	4042449	rs2239307	C	T	239.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:12,11:0.48:23
chr16	4043292	rs2239309	C	G	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	4165432	rs2530898	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	4242093	rs8051399	C	T	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:27,48:0.64:75
chr16	4245393	rs11076822	T	C	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr16	4245426	rs11076823	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:33,28:0.46:61
chr16	4245693	rs10852643	A	G	3367.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:99,152:0.61:251
chr16	4254523	rs60137128	C	T	5450.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=3.318;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.585;QD=13.59;ReadPosRankSum=-0.707;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:157,244:0.61:401
chr16	4254699	rs62039297	G	A	4806.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:119,211:0.64:330
chr16	4254725	rs8054937	A	G	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:71,135:0.66:206
chr16	4310468	rs251732	C	G	1554.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:216,94:0.30:310
chr16	4386814	rs669561	T	C	24598.77	.	AC=2;AF=1.00;AN=2;DB;DP=925;set=Intersection	GT:AD:AF:DP	1/1:0,920:1.00:920
chr16	4410867	rs140995663	TCACTGCTGGCCCCACCTCTCCA	T	1820.73	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:115,56:0.33:171
chr16	4414186	.	C	CA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=4.004;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.346;QD=1.18;ReadPosRankSum=-1.366;SOR=1.274;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr16	4414727	rs2277852	G	A	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:143,79:0.36:222
chr16	4414987	rs2277851	G	A	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:304,172:0.36:476
chr16	4415410	rs3747575	G	T	1767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=4.255;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.36;ReadPosRankSum=-0.185;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:181,97:0.35:278
chr16	4415455	rs3747576	C	G	1829.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.607;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-0.384;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:194,104:0.35:298
chr16	4431202	rs758044	A	G	25945.77	.	AC=2;AF=1.00;AN=2;DB;DP=987;set=Intersection	GT:AD:AF:DP	1/1:0,985:1.00:985
chr16	4431360	rs35713275	G	A	5398.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:449,270:0.38:719
chr16	4432029	rs3810818	A	C	20792.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:2,798:1.00:800
chr16	4445327	rs3747579	C	T	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr16	4455675	rs3747580	G	A	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	4475868	rs2304631	A	T	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	4476089	rs1139652	T	C	5573.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr16	4484328	rs4785962	A	G	1846.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	4484396	rs1139653	A	T	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	4484613	rs4785964	A	G	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	4494549	rs12446640	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	4496973	rs2304633	T	A	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	4500544	rs2304634	C	T	6970.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	4516092	rs3747584	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	4519548	rs62039231	A	G	5768.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr16	4524060	rs3761680	C	A	4430.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	4559351	.	TA	T	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.454;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:63,20:0.24:83
chr16	4562351	rs8129	T	C	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.81;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	4562351	.	TCAGCCCCC	CCAGCCCCC,CCAGCCCCG	1210	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=77,55;NR=42,30;PP=394,1210;QD=3.60311943317;SC=AAGCTCATTGTCAGCCCCCTG;SbPval=0.53;Source=Platypus;TC=119;TCF=77;TCR=42;TR=119,85;WE=4562367;WS=4562341;set=Platypus	GT:AF:DP	0/1:1.00:119
chr16	4562359	.	C	G	2248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.62;ReadPosRankSum=-1.316;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:38,106:0.74:144
chr16	4562512	rs7665	A	G	8516.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,331:1.00:332
chr16	4621725	rs35531180	GA	G	3170.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	4625126	rs9673241	G	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:208,94:0.31:302
chr16	4625274	rs1256768	A	G	13031.77	.	AC=1;AF=0.500;AN=2;DB;DP=885;set=Intersection	GT:AD:AF:DP	0/1:275,607:0.69:882
chr16	4625938	rs2450386	A	T	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr16	4641814	rs5815211	AG	A	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.928;QD=3.75;ReadPosRankSum=-0.577;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:50,14:0.22:64
chr16	4649955	rs11076843	T	C	3014.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.85;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	4649965	rs7403819	T	C	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.90;SOR=2.513;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	4660196	rs2306770	G	C	12747.77	.	AC=1;AF=0.500;AN=2;DB;DP=896;set=Intersection	GT:AD:AF:DP	0/1:292,602:0.67:894
chr16	4660247	rs863500	G	A	8523.77	.	AC=1;AF=0.500;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	0/1:204,396:0.66:600
chr16	4660342	rs841184	C	T	5391.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	4664412	rs138923012	T	TG	172.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=0.720;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr16	4664833	rs860889	T	G	7757.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	4674954	rs3747587	C	G	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:297,205:0.41:502
chr16	4675116	rs1386092	G	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:127,90:0.41:217
chr16	4700318	rs373572089	CA	C	182.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.053;MLEAC=1;MLEAF=0.500;MQ=60.43;MQRankSum=2.507;QD=1.94;ReadPosRankSum=0.708;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:63,31:0.33:94
chr16	4721468	rs715109	T	C	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:393,201:0.34:594
chr16	4736080	rs144808025	TTCTGGCTGCGC	T	928.73	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:98,46:0.32:144
chr16	4736316	rs841225	C	T	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:206,95:0.32:301
chr16	4747136	rs841215	G	C	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:159,97:0.38:256
chr16	4748825	rs841214	C	T	1509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-1.860;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:173,93:0.35:266
chr16	4751045	rs863980	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:133,85:0.39:218
chr16	4752134	rs841210	A	G	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:197,102:0.34:299
chr16	4786456	rs859314	A	G	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:43,33:0.43:76
chr16	4787987	rs859310	G	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:98,56:0.36:154
chr16	4790059	rs111697257	C	CAA	341.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=3.637;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=6.70;ReadPosRankSum=1.084;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chr16	4790273	rs859305	G	A	1377.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:156,78:0.33:234
chr16	4794873	rs2075469	C	T	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:94,46:0.33:140
chr16	4796393	rs737700	A	G	2352.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:232,132:0.36:364
chr16	4796595	rs759988	T	C	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:81,79:0.49:160
chr16	4796871	rs2341988	A	G	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	4797226	rs759989	T	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr16	4797457	rs17853375	C	T	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:208,113:0.35:321
chr16	4801723	rs921863	G	A	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr16	4802370	rs3747601	C	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:45,44:0.49:89
chr16	4802386	rs3747602	G	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:51,47:0.48:98
chr16	4812209	rs12599765	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=-0.299;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:129,48:0.27:177
chr16	4815425	rs4786548	T	C	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:93,37:0.28:130
chr16	4815602	rs12919587	T	C	6159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.516;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.06;ReadPosRankSum=0.849;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:165,273:0.62:438
chr16	4815608	rs4786549	A	G	15747.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.67;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,418:1.00:418
chr16	4829602	rs79848476	T	C	775.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr16	4833421	rs7201715	A	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.148;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=2.243;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:53,17:0.24:70
chr16	4833615	rs6500634	C	T	2448.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:226,136:0.38:362
chr16	4833861	rs112713748	T	C	1297.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr16	4833907	rs368003981	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:30,82:0.73:112
chr16	4833970	rs759991	C	T	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:157,91:0.37:248
chr16	4834165	rs8043579	C	T	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=6.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.83;ReadPosRankSum=-1.123;SOR=0.277;set=HC	GT:AD:AF:DP	0/1:58,38:0.40:96
chr16	4834168	rs8043725	C	T	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=6.371;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=-0.960;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:56,36:0.39:92
chr16	4835778	.	T	TA	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=2.658;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.41;ReadPosRankSum=0.996;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr16	4835794	rs3833435	G	GA	1832.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.77;ReadPosRankSum=-0.356;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:4,62:0.94:66
chr16	4836155	rs71402568	G	GT	1595.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	4837362	rs741695	T	C	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:115,57:0.33:172
chr16	4837545	rs9673735	A	G	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:489,248:0.34:737
chr16	4846068	rs2075465	T	C	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	4846336	rs62036088	G	A	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:96,52:0.35:148
chr16	4847524	rs1982515	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr16	4847619	.	T	TGGGGTACACCAGACCCCAAGACTGGGGCGCTCTGAGGGCGTGGCAGGGCCCTCAGAACCCCTGCCCACTGTG	2455.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.114;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=84.68;ReadPosRankSum=0.782;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:1,28:0.97:29
chr16	4847640	.	GT	AC	809	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=27;MQ=59.91;NF=12;NR=13;PP=809;QD=34.4987149945;SC=AGACCCCAAGGTTGGGGCGCT;SbPval=0.24;Source=Platypus;TC=70;TCF=41;TCR=29;TR=25;WE=4847649;WS=4847630;set=Platypus	GT:AD:AF:DP	1/0:45,25:0.36:70
chr16	4848494	rs8053790	C	G	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:24,11:0.31:35
chr16	4848730	.	A	G	5498.77	.	AC=1;AF=0.500;AN=2;DP=454;set=Intersection	GT:AD:AF:DP	0/1:192,261:0.58:453
chr16	4848807	rs3214843	TAA	T	3623.73	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:69,93:0.57:162
chr16	4849705	rs11553876	C	T	2818.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:234,150:0.39:384
chr16	4855279	rs8064024	A	G	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	4861709	rs2085329	G	C	8368.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	4863638	rs78660617	G	T	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr16	4867565	rs6500635	A	G	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	4872970	rs2075466	G	C	1327.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:181,78:0.30:259
chr16	4897103	rs111601308	C	G	1051.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:90,51:0.36:141
chr16	4897153	rs2072595	A	G	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:201,112:0.36:313
chr16	4903243	rs8056889	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=0.920;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr16	4908504	rs3747613	C	G	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,27:0.39:69
chr16	4908667	rs3747614	A	G	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:217,107:0.33:324
chr16	4918732	rs56159834	A	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr16	4920412	rs7200395	T	C	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:245,119:0.33:364
chr16	4920661	rs6500637	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:75,44:0.37:119
chr16	4923091	rs2251666	G	A	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:140,67:0.32:207
chr16	4924160	rs12445265	A	G	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:91,50:0.35:141
chr16	4927285	rs12444761	C	T	1195.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:123,63:0.34:186
chr16	4930100	rs1876359	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:118,72:0.38:190
chr16	4933939	rs2037912	G	C	6705.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:209,299:0.59:508
chr16	4934549	rs1049208	G	A	16449.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:162,420:0.72:582
chr16	4934564	rs1049207	C	G	17141.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:173,447:0.72:620
chr16	4935146	rs1049206	C	T	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	0/1:494,206:0.29:700
chr16	4938160	rs2734742	T	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	4938280	rs2075637	T	C	1649.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:23,71:0.76:94
chr16	4938321	rs2075636	A	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr16	4939116	rs8060738	C	T	139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.25;ReadPosRankSum=-1.509;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr16	4939225	rs140073794	G	GTT	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.816;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.74;MQRankSum=0.998;QD=12.23;ReadPosRankSum=1.434;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr16	4939230	.	T	TTTTTG	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-0.998;QD=15.89;ReadPosRankSum=-0.721;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr16	4939241	.	T	TG	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=56.73;MQRankSum=1.426;QD=10.70;ReadPosRankSum=-0.495;SOR=1.170;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	4940387	rs11644917	G	A	1673.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=5.192;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.998;QD=15.08;ReadPosRankSum=0.230;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:36,75:0.68:111
chr16	4940809	rs2471844	A	G	8796.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr16	4940989	rs2471843	A	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.90;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	4940989	.	ACTGAA	CCTGAA,CCTGAG	201	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.33;FR=0.5000,0.5000;HP=4;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=3,2;NR=18,11;PP=117,201;QD=7.22720059749;SC=GATGACACCCACTGAAGCCCC;SbPval=0.58;Source=Platypus;TC=21;TCF=3;TCR=18;TR=21,13;WE=4941002;WS=4940979;set=Platypus	GT:AF:DP	0/1:1.00:21
chr16	4940994	rs760118	A	G	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=-0.940;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:9,14:0.61:23
chr16	4942099	rs1049205	C	T	3152.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:77,144:0.65:221
chr16	4944518	rs1876363	C	G	10371.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,390:1.00:390
chr16	4945221	rs12709119	A	G	9846.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr16	4947534	rs8051246	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	4948936	rs12443906	C	T	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	4949440	rs76087945	G	A	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,18:0.30:60
chr16	4952598	rs2048098	C	G	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;MQ=60.15;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr16	4952627	rs79655418	A	G	892.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:19,33:0.63:52
chr16	4961003	rs8057613	A	G	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	5009232	rs78937023	C	T	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:80,34:0.30:114
chr16	5009433	rs7200245	G	A	10588.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr16	5009605	rs61423624	C	G	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr16	5037498	.	T	TG	1039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.727;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.421;QD=9.04;ReadPosRankSum=-0.722;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:62,53:0.46:115
chr16	5041778	rs2972265	T	C	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	5046787	rs2270260	G	C	2686.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	5050554	rs2908674	C	G	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:41,59:0.59:100
chr16	5050897	rs2286966	G	C	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:70,27:0.28:97
chr16	5053331	rs2972280	C	T	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,10:0.48:21
chr16	5055864	rs55930593	CA	C	1095.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.656;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.676;QD=7.94;ReadPosRankSum=1.113;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:38,100:0.72:138
chr16	5056122	rs2302555	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:29,22:0.43:51
chr16	5061085	rs2908669	A	C	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=0.128;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:108,36:0.25:144
chr16	5064917	rs2012649	C	T	2447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=3.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-1.198;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:235,136:0.37:371
chr16	5075542	rs887854	G	A	2489.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:51,117:0.70:168
chr16	5075633	rs7188856	G	A	574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.625;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=1.590;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:141,45:0.24:186
chr16	5077452	rs12927924	G	A	629.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr16	5078215	rs8060705	G	C	10639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=70.597;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.06;ReadPosRankSum=2.255;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:89,265:0.75:354
chr16	5078220	rs71390614	C	T	10559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.172;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=84.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.26;ReadPosRankSum=2.836;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:88,261:0.75:349
chr16	5078841	rs1995278	T	C	9155.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr16	5078857	rs12929283	C	T	5521.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:126,250:0.66:376
chr16	5080523	rs2102065	C	T	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:104,51:0.33:155
chr16	5083209	rs35962888	G	A	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr16	5083483	rs2972272	T	C	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:42,86:0.67:128
chr16	5097947	rs1127920	A	G	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:136,82:0.38:218
chr16	5105440	rs741166	T	C	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	5105939	.	CGTGTGTGTGTGTGT	C	132.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=26.55;ReadPosRankSum=1.282;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr16	5106050	rs77055786	A	G	1244.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:41,63:0.61:104
chr16	5106184	rs741164	C	T	6020.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr16	5108787	rs76289087	C	T	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr16	5112642	rs143371301	GA	G	807.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,49:0.63:78
chr16	5122072	rs112683515	G	GGTCT	6965.73	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:96,175:0.65:271
chr16	5122191	rs34061670	C	CG	1968.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,74:0.97:76
chr16	5123270	rs62036244	C	T	646.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:32,31:0.49:63
chr16	5125365	rs4786590	C	T	9213.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr16	5127335	rs11076869	T	A	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	5517175	rs34212245	T	TTC	576.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.853;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=2.506;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:36,44:0.55:80
chr16	6533549	rs7187508	C	A	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	6704474	rs11640601	A	G	4275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.23;ReadPosRankSum=1.208;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:55,102:0.65:157
chr16	6704480	rs11645523	C	G	4386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.966;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.92;ReadPosRankSum=-0.552;SOR=0.494;set=HC	GT:AD:AF:DP	0/1:60,116:0.66:176
chr16	6704749	rs2058527	T	G	3273.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:74,145:0.66:219
chr16	7101951	rs74186980	A	C	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chr16	7102036	rs35212568	CT	C	8821.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	7568412	rs55642412	C	T	3469.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:268,178:0.40:446
chr16	7637407	.	C	T	397.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:26,22:0.46:48
chr16	7645808	rs12935264	C	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	7657373	rs1507010	A	G	992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-1.440;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:154,66:0.30:220
chr16	7657432	rs4616299	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	7703785	rs3217052	G	GCT	2138.73	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:206,88:0.30:294
chr16	7704032	rs2302216	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=1.182;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr16	7715108	rs8064206	T	C	4610.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	7721778	rs2286541	C	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,18:0.47:38
chr16	7726691	rs2191134	A	G	372.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr16	7726757	rs2302213	A	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr16	7743418	rs60812796	C	CT	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.220;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=1.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=-0.131;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:40,78:0.66:118
chr16	7743481	rs199635596	G	GA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=0.223;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	7759164	rs7196923	T	C	8051.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	7759206	rs62011897	G	T	2227.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:47,99:0.68:146
chr16	7760846	rs5815427	T	TA	162.50	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr16	8619750	rs7198383	C	T	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:2,204:0.99:206
chr16	8620096	rs9922116	T	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	8728953	rs1731044	C	T	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.03;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	8729254	rs3108687	C	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	8729275	rs1641040	T	C	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	8729323	rs1731043	A	T	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	8732733	rs1362345	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	8732882	rs5815485	CA	C	6203.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	8733071	rs1641048	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	8734826	.	G	GCTGGCTGGCTGT	746	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=32;MMLQ=22;MQ=63.86;NF=6;NR=8;PP=746;QD=53.8571428571;SC=TGGCTGGCTGGCTGGCTGGCT;SbPval=0.53;Source=Platypus;TC=27;TCF=11;TCR=16;TR=14;WE=8734838;WS=8734816;set=Platypus	GT:AD:AF:DP	1/0:13,14:0.52:27
chr16	8734830	.	G	GCTGGCTGT	227	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=2;MGOF=32;MMLQ=22;MQ=64.44;NF=6;NR=8;PP=227;QD=16.7857142857;SC=TGGCTGGCTGGCTGGCTGGCT;SbPval=0.53;Source=Platypus;TC=27;TCF=11;TCR=16;TR=14;WE=8734838;WS=8734816;set=Platypus	GT:AD:AF:DP	0/1:13,14:0.52:27
chr16	8735120	rs8062990	T	C	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	8735200	rs8045911	G	A	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	8735212	rs1629322	T	C	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	8735245	rs1641055	C	T	6834.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	8735355	rs1641056	A	G	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	8736028	rs1614616	T	C	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	8736150	rs1615559	A	C	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	8736246	rs1731007	G	A	10113.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,377:0.99:379
chr16	8736499	rs1618219	C	T	1511.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	8738350	rs11645418	C	T	4765.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	8738398	rs1641065	A	G	8152.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	8738427	rs1641066	T	C	9462.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr16	8738499	rs1731000	G	A	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	8738579	rs1641067	A	G	3360.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	8738622	rs9933132	C	T	1779.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	8739954	rs1641070	G	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	8740015	rs1730994	A	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	8740418	rs1641072	T	C	7400.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr16	8740503	rs1730992	G	A	4647.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr16	8740653	rs1641073	C	T	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	8807571	rs12447079	C	T	173.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr16	8829715	rs1640998	T	C	962.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:109,52:0.32:161
chr16	8839954	rs1731017	A	G	2109.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	8840025	rs2103340	C	T	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	8841794	rs753071	T	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	8841960	rs1641010	T	C	2507.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	8842128	rs1641011	T	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	8851767	rs12930438	C	T	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:3,229:0.99:232
chr16	8858580	rs2302608	T	A	7474.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	8858700	rs112675542	GCA	G	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=-1.727;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:305,86:0.22:391
chr16	8862212	rs8049072	C	T	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	8862506	rs1273406	C	A	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	8862592	rs1273407	T	C	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	8868776	rs1641022	C	A	1633.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	8873456	rs1079348	T	C	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:68,37:0.35:105
chr16	8873493	rs1079349	C	T	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	8873572	rs41305755	G	C	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.70;ReadPosRankSum=0.421;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:15,22:0.59:37
chr16	8873576	rs45545237	C	G	839.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.33;ReadPosRankSum=0.612;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:15,21:0.58:36
chr16	8895909	rs2304471	C	A	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:174,72:0.29:246
chr16	8896066	rs2304470	G	C	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	8898458	rs8053440	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.53;ReadPosRankSum=1.499;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr16	8904877	rs34742119	T	TATG	1958.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	8907025	rs3743807	C	T	5178.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:150,243:0.62:393
chr16	8907145	rs9924186	G	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	8948974	rs6898	T	C	2667.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	8952113	rs62033507	C	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr16	8952248	rs988065	A	G	7038.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	8953081	rs8097	C	G	2197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.797;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=3.876;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.40;ReadPosRankSum=1.108;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:32,102:0.76:134
chr16	8988386	rs28362503	CG	C,CGG	356.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=15;set=Intersection	GT:AF:DP	1/1:1.00:15
chr16	8988777	rs2304467	C	G	851.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:71,42:0.37:113
chr16	8989403	rs1677473	A	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	8992828	rs2289109	G	T	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr16	8992868	rs2437724	AC	CA	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	8994563	rs2447919	C	T	1476.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr16	8995177	rs199579856	GAAA	G,GAA	1012.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.63;QD=29.79;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,26,8:0.76,0.24:34
chr16	8995927	rs2304466	G	A	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:68,41:0.38:109
chr16	8996377	rs2447918	C	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr16	8998571	rs2437727	G	C	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.67;ReadPosRankSum=-1.220;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr16	9004564	rs2447916	C	A	14558.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:1,541:1.00:542
chr16	9010213	rs7195624	T	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	9010260	rs138207509	ATTTTCTGAATTAGGTC	A	689.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,19:0.58:33
chr16	9010446	rs57510291	A	AC	3606.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	9014350	rs1677470	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	9014385	rs7189170	G	A	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:34,19:0.36:53
chr16	9014434	rs2447912	T	G	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	9015252	rs30761	A	T	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.81;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	9015252	.	ATTTCAT	TTTTCAC,TTTTCAT	429	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.13;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=6,26;NR=17,41;PP=342,429;QD=17.1942554288;SC=CCCATTTATGATTTCATTGCT;SbPval=0.9;Source=Platypus;TC=67;TCF=26;TCR=41;TR=23,67;WE=9015266;WS=9015242;set=Platypus	GT:AF:DP	0/1:0.34:67
chr16	9015258	rs9940652	T	C	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.340;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr16	9017061	rs139138924	T	TACAACGATGTGGGGGTTTGTAGTTGCATCATTTAA	4679.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	9030444	rs1382390	C	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	9186735	rs4630540	C	G	590.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.72;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	9186749	.	GT	G	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=1.423;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-0.955;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chr16	9210373	rs8045589	A	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	9862556	rs11866328	G	T	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr16	9916204	rs9806806	C	G	6468.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	9934683	.	AAAAAAAAG	A	77.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=2.985;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr16	9934689	rs373772021	AAG	A	793.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.156;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.67;ReadPosRankSum=-1.661;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:23,45:0.66:68
chr16	9943666	rs2229193	C	T	7019.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr16	10524656	rs56252625	GGAC	G	8863.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	10532211	rs1532824	A	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	10566146	rs4453490	G	T	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	10574829	rs12596111	A	T	8899.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr16	10575824	rs1970817	C	A	5767.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	10625605	rs111364972	GATGAATGAATGA	G,GATGA	1137.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;set=Intersection	GT:AF:DP	1/2:0.61,0.39:28
chr16	10625887	rs7195563	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:204,116:0.36:320
chr16	10625997	rs7194566	G	A	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr16	10626059	rs35914943	AG	A	1690.73	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:51,69:0.57:120
chr16	10626070	rs34039732	G	A	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:62,59:0.49:121
chr16	10626122	rs12928389	G	C	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr16	10627085	rs4780939	A	G	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr16	10631945	rs1504883	G	A	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	10631985	rs1504884	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	10769958	rs2719710	T	C	12793.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr16	10770075	rs2719711	A	G	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	10770091	rs2719712	T	C	3241.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr16	10770160	rs12925749	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	10775822	rs10221070	G	T	2158.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	10776063	rs10221071	G	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	10783088	.	TA	T	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=1.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.64;ReadPosRankSum=0.194;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:141,39:0.22:180
chr16	10788106	rs2251984	A	G	3384.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	10788129	rs2251985	G	T	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	10788624	rs145995713	T	C	3173.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:93,144:0.61:237
chr16	10837913	rs2233531	C	G	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr16	10840847	rs4780323	C	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr16	10849726	rs2233537	G	A	1237.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:105,65:0.38:170
chr16	10855341	rs2233539	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr16	10855521	rs36097495	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.293;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.674;QD=0.84;ReadPosRankSum=-0.660;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:123,33:0.21:156
chr16	10912049	rs113887233	G	A	4238.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:106,195:0.65:301
chr16	10912139	rs13338873	C	T	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:36,64:0.64:100
chr16	10989374	rs11074937	C	T	6709.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr16	10992715	rs6498121	T	G	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:1,116:0.99:117
chr16	10995933	rs8046121	A	G	7139.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	10996399	rs4781016	C	A	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	10996682	rs35170497	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	10998482	rs4780333	T	C	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	11000848	rs4774	G	C	14913.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr16	11001770	rs34654419	G	T	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	11002927	rs7197779	A	G	9825.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr16	11003101	rs7196089	G	A	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	11015906	rs6498134	A	G	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	11017058	rs4781024	G	A	6504.77	.	AC=1;AF=0.500;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	0/1:185,305:0.62:490
chr16	11064865	.	A	AT	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.466;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=9.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.306;SOR=3.091;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr16	11114006	rs2286975	G	A	2016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.27;ReadPosRankSum=0.742;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:59,93:0.61:152
chr16	11136048	rs2302557	C	G	3071.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr16	11141321	rs16957976	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	11154770	rs2286973	G	A	3146.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:82,147:0.64:229
chr16	11250351	rs77658795	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:19,25:0.57:44
chr16	11250413	rs7189563	C	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:55,68:0.55:123
chr16	11250774	rs370045010	GC	G	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,7:0.41:17
chr16	11349403	rs27829	A	C	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	11350059	rs27831	T	C	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	11361895	rs8043625	C	G	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.704;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.70;ReadPosRankSum=1.349;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:47,57:0.55:104
chr16	11362640	rs56069754	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:19,53:0.74:72
chr16	11362729	rs11640138	G	A	3465.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:55,154:0.74:209
chr16	11367143	rs438289	G	A	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	11367154	rs429744	C	T	8012.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	11367477	rs2301127	G	A	665.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,26:0.74:35
chr16	11369930	rs1646022	C	G	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:115,60:0.34:175
chr16	11374866	rs737008	G	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	11439303	rs12149160	G	T	140.96	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.10;ReadPosRankSum=-0.493;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	11439496	rs11545336	G	A	405.81	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:3,18:0.86:21
chr16	11439639	rs918737	T	C	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr16	11439679	rs918738	C	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,47:0.64:73
chr16	11439733	rs918739	G	T	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr16	11444403	rs2032929	T	C	952.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:22,24:0.52:46
chr16	11444425	rs28627609	C	T	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-1.561;QD=16.67;ReadPosRankSum=1.268;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:37,30:0.45:67
chr16	11444430	rs2032930	T	G	1148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.663;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-1.612;QD=15.52;ReadPosRankSum=1.659;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:42,32:0.43:74
chr16	11444454	rs57767216	GA	G	3002.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:6,94:0.94:100
chr16	11444469	rs2032931	C	T	1293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.282;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.008;QD=10.19;ReadPosRankSum=-0.778;SOR=1.088;set=HC	GT:AD:AF:DP	0/1:63,64:0.50:127
chr16	11444572	rs7204628	A	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:61,102:0.63:163
chr16	11444726	rs6498185	C	T	236.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr16	11537347	.	A	AAGAGAGAG,AAGAGAGAGAGAGAG	4221.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.82;QD=81.19;SOR=1.565;set=HC	GT:AD:AF:DP	1/2:0,27,25:0.52,0.48:52
chr16	11537471	rs12925081	C	T	4010.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:90,177:0.66:267
chr16	11540596	rs4359463	A	C	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:64,156:0.71:220
chr16	11540712	rs4500747	T	C	4133.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	11540760	rs4502229	C	T	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,25:0.30:84
chr16	11541685	rs4296278	A	G	3224.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	11541896	rs4238608	G	A	9503.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	11542894	rs4467099	C	T	10095.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr16	11544673	rs12932948	G	A	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:50,80:0.62:130
chr16	11544741	rs6498192	G	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	11544824	rs6498194	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	11550619	rs72777209	G	A	563.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,31:0.29:106
chr16	11550979	rs4559925	C	T	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:30,45:0.60:75
chr16	11553842	rs7206698	G	C	5165.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:191,245:0.56:436
chr16	11553883	rs35839588	C	G	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:174,150:0.46:324
chr16	11554301	rs72777212	C	G	3338.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:338,184:0.35:522
chr16	11554737	rs8046254	C	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	11554867	rs8050530	C	T	2870.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:78,128:0.62:206
chr16	11555016	rs6498202	C	G	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	11555861	rs4781101	G	C	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:85,64:0.43:149
chr16	11556121	rs4254342	A	G	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	11645776	rs35493477	CT	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.70;ReadPosRankSum=0.250;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chr16	11647436	rs139116481	G	A	2321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=4.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.156;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:214,133:0.38:347
chr16	11650325	rs3743582	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:114,53:0.32:167
chr16	11690308	rs113749419	A	AGAGGAGGAG	1144.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.105;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.780;QD=18.46;ReadPosRankSum=-1.086;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:31,31:0.50:62
chr16	11797365	rs147693005	TACAC	T,TAC	1900.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=34.56;SOR=1.958;set=HC	GT:AD:AF:DP	1/2:0,42,13:0.76,0.24:55
chr16	11824056	rs11639945	T	G	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	11828018	rs4780398	A	G	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	11836398	rs3743587	C	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr16	11836508	rs3743588	G	A	2013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.103;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.34;ReadPosRankSum=0.871;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:60,91:0.60:151
chr16	11846508	rs2303822	T	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:97,47:0.33:144
chr16	11850003	rs7198247	A	G	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:165,101:0.38:266
chr16	11852354	rs8743	A	C	1998.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:245,120:0.33:365
chr16	11857532	rs13338039	G	A	1274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.91;ReadPosRankSum=1.142;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:79,64:0.45:143
chr16	11859341	rs7199993	A	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.939;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:131,51:0.28:182
chr16	11862376	rs34038330	G	GA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.150;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.817;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.518;QD=5.05;ReadPosRankSum=1.305;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:21,17:0.45:38
chr16	11940390	rs8052900	T	C	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.846;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.06;ReadPosRankSum=0.137;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:63,34:0.35:97
chr16	11940764	rs1019814	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.493;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-2.101;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:18,7:0.28:25
chr16	11940829	rs1019813	C	T	58.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	11945141	rs139246232	C	T	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:66,172:0.72:238
chr16	11945231	rs2075158	T	C	2478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=563;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.055;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:400,163:0.29:563
chr16	11969724	rs33657	G	C	6546.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:173,298:0.63:471
chr16	11980878	.	GT	G	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=0.394;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr16	11981487	rs3752426	G	A	1538.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:157,87:0.36:244
chr16	11991944	rs33635	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr16	12008941	rs33619	T	G	5973.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:96,254:0.73:350
chr16	12009150	rs28653099	C	A	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr16	12009279	rs424518	A	G	8825.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	12009304	rs11544193	C	A	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:275,148:0.35:423
chr16	12009530	.	CCCGCCGCCG	C	2943.73	.	AC=1;AF=0.500;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	0/1:114,80:0.41:194
chr16	12009614	rs435108	G	A	5795.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	12009781	rs434762	G	A	23031.77	.	AC=2;AF=1.00;AN=2;DB;DP=860;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr16	12021298	.	GTTCCACCTCAGCGGCCCTCCGCCTCTTGGGTTCGGGTGGTGA	G	3078.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.502;ClippingRankSum=0.000;DP=259;ExcessHet=3.0103;FS=1.123;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-2.132;QD=16.29;ReadPosRankSum=-1.658;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:100,89:0.47:189
chr16	12021332	rs256390	G	A	1987.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:102,97:0.49:199
chr16	12021521	.	G	A	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.278;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.948;MLEAC=1;MLEAF=0.500;MQ=55.20;MQRankSum=-5.992;QD=0.26;ReadPosRankSum=-1.283;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:110,18:0.14:128
chr16	12031390	rs677507	C	T	6624.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr16	12031448	rs636664	T	C	7233.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr16	12059038	rs11570139	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr16	12060163	rs373496	A	G	4961.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	12140339	rs149496739	G	A	4903.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:130,226:0.63:356
chr16	12142130	rs56363861	C	T	1394.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,54:0.61:89
chr16	12142172	rs3826097	T	G	4337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.046;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.807;QD=23.83;ReadPosRankSum=-0.939;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:73,109:0.60:182
chr16	12142175	rs3826098	C	G	4380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.691;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-0.815;QD=23.06;ReadPosRankSum=-0.799;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:77,113:0.59:190
chr16	12145683	rs373216147	CT	C	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-2.519;QD=2.91;ReadPosRankSum=0.052;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:101,61:0.38:162
chr16	12154875	rs3894905	G	A	249.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,12:0.32:38
chr16	12162969	rs1641843	A	G	1808.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:154,102:0.40:256
chr16	12181510	rs11648468	C	T	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=0.043;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr16	12181702	rs11648228	G	T	2436.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:223,131:0.37:354
chr16	12223637	rs62038898	A	G	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr16	12296803	rs1701115	G	T	9646.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	12297234	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=1;MGOF=22;MMLQ=22;MQ=57.31;NF=310;NR=229;PP=2962;QD=20;SC=GGAGGTGACAACTCTGAAGTT;SbPval=0.74;Source=Platypus;TC=1228;TCF=647;TCR=581;TR=539;WE=12297255;WS=12297224;set=Platypus	GT:AD:AF:DP	0/1:689,539:0.44:1228
chr16	12297247	.	A	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=2;HapScore=1;MGOF=22;MMLQ=22;MQ=57.71;NF=340;NR=254;PP=2962;QD=20;SC=CTGAAGTTGTATAGTGTGGCC;SbPval=0.73;Source=Platypus;TC=1257;TCF=660;TCR=597;TR=594;WE=12297255;WS=12297224;set=Platypus	GT:AD:AF:DP	0/1:663,594:0.47:1257
chr16	12297247	.	A	ATAGTGTGGCCCTGATGTCAGATGGACTGGTGGCATTGGAGGTGACGTCTCTGAAGTTGTGTAGTGAGGCCTTGCTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTGTAGTGTGACCCTGGTGTCAGGTGGACTGGTGGCATTGGAGGTGACAGCTCTGAAGTTGTG	14124.73	.	AC=2;AF=1.00;AN=2;DP=731;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=19.62;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:720,0:0:720
chr16	12297313	.	T	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=3;HapScore=1;MGOF=35;MMLQ=21;MQ=57.38;NF=169;NR=246;PP=2962;QD=20;SC=TTGTGTAGTGTGGCCTTGCTG;SbPval=0.77;Source=Platypus;TC=1083;TCF=501;TCR=582;TR=415;WE=12297321;WS=12297303;set=Platypus	GT:AD:AF:DP	1/0:668,415:0.38:1083
chr16	12297562	rs1701113	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	12371915	rs12448443	T	C	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr16	12449855	rs7190509	T	C	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr16	12449925	rs11075062	C	G	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:79,110:0.58:189
chr16	12450163	rs4781211	C	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:32,46:0.59:78
chr16	12492133	rs8055030	C	T	1509.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:65,40:0.38:105
chr16	12492153	rs8055044	C	G	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:93,61:0.40:154
chr16	12536703	rs11075077	A	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.202;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr16	12618465	rs11075087	G	C	702.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr16	12621176	rs2269446	C	G	1080.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:16,47:0.75:63
chr16	12662328	rs2288422	C	G	2212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-0.673;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:394,152:0.28:546
chr16	12662420	rs2288423	C	T	3055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-2.412;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:473,189:0.29:662
chr16	12662586	rs1075844	AC	CA	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	0/1:49,21:0.30:70
chr16	12758966	rs1713480	T	C	9175.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr16	12759027	rs1713479	A	G	3887.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	13002359	rs9938751	T	C	8504.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr16	13307302	rs7195991	C	A	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:59,55:0.48:114
chr16	13307325	rs140527178	TTG	T	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.755;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=1.640;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:48,8:0.14:56
chr16	14026007	rs254942	G	A	2489.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	14026902	.	C	CAA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.360;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=2.881;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-0.984;SOR=1.721;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr16	14026951	rs3136130	G	T	798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=0.821;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:23,40:0.63:63
chr16	14031520	rs31869	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	14038545	rs1799799	T	C	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,92:0.69:134
chr16	14646096	rs78379650	C	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:14,17:0.55:31
chr16	14649626	rs16963773	C	T	781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.50;ReadPosRankSum=-0.492;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:28,40:0.59:68
chr16	14674918	rs116955432	T	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr16	14675943	rs72787692	C	G	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:52,92:0.64:144
chr16	14678349	rs374880534	A	AC	1571.73	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:206,124:0.38:330
chr16	14687144	rs75783314	A	G	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:82,173:0.68:255
chr16	14687348	.	TTA	T	97	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=2;MGOF=12;MMLQ=15;MQ=60.99;NF=0;NR=9;PP=97;QD=16.3644763596;SC=CTTTCCAGACTTAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=18;TCF=0;TCR=18;TR=9;WE=14687357;WS=14687338;set=Platypus	GT:AD:AF:DP	1/0:9,9:0.50:18
chr16	14700254	rs4782156	G	A	1096.03	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.789;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=0.029;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:9,56:0.86:65
chr16	14702312	rs72787700	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,3:0.60:5
chr16	14738525	rs376559546	CT	C	216.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.458;QD=3.28;ReadPosRankSum=-0.066;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:40,26:0.39:66
chr16	14742400	rs11546303	T	G	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:76,160:0.68:236
chr16	14763076	rs114300158	C	T	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:19,24:0.56:43
chr16	14772551	rs117954937	C	T	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:30,35:0.54:65
chr16	14772624	.	CA	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.174;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=1.108;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:139,30:0.18:169
chr16	14951630	rs199610264	CT	C	476.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-0.766;QD=7.95;ReadPosRankSum=1.519;SOR=2.899;set=HC	GT:AD:AF:DP	0/1:14,46:0.77:60
chr16	14958514	rs117835774	A	G	3513.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:212,170:0.45:382
chr16	15068908	rs28418438	C	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.903;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-1.620;QD=4.40;ReadPosRankSum=-0.178;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:86,32:0.27:118
chr16	15069202	rs71232880	T	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=54.07;MQRankSum=-5.462;QD=5.11;ReadPosRankSum=-0.640;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr16	15082865	rs4985167	C	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.486;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=1.752;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=1.462;QD=2.72;ReadPosRankSum=1.846;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:223,63:0.22:286
chr16	15083531	rs375114359	C	A	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,10:0.30:33
chr16	15083569	.	C	CGCA	69.73	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,4:0.20:20
chr16	15091589	rs11421981	C	CT	1698.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,103:0.67:153
chr16	15091601	rs28545123	G	C	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.180;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.693;MLEAC=1;MLEAF=0.500;MQ=54.68;MQRankSum=-3.928;QD=1.30;ReadPosRankSum=-1.766;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:163,35:0.18:198
chr16	15092116	rs6498535	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chr16	15098047	rs11549900	C	G	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-2.720;QD=2.72;ReadPosRankSum=-0.482;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:127,35:0.22:162
chr16	15100202	rs71271216	A	G	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:80,97:0.55:177
chr16	15110077	rs4262938	C	T	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:247,134:0.35:381
chr16	15111218	rs4985162	C	T	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.089;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-1.289;QD=1.52;ReadPosRankSum=-0.372;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:365,76:0.17:441
chr16	15116521	rs4985160	C	T	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.164;ClippingRankSum=0.000;DB;DP=603;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-12.014;QD=0.85;ReadPosRankSum=-0.329;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:512,87:0.15:599
chr16	15116625	rs1058637	G	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:96,102:0.52:198
chr16	15120411	rs62039476	T	C	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:50,26:0.34:76
chr16	15127310	rs67624034	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:44,15:0.25:59
chr16	15129459	rs4985155	A	G	583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.580;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.22;ReadPosRankSum=0.958;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:39,32:0.45:71
chr16	15129940	rs3198697	C	T	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:52,100:0.66:152
chr16	15129970	rs7200543	A	G	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:110,60:0.35:170
chr16	15131962	rs1135999	A	G	509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.417;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:75,33:0.31:108
chr16	15131974	rs1136001	G	T	521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=1.642;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.246;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:81,35:0.30:116
chr16	15132108	rs2740	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.780;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=0.155;SOR=0.433;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr16	15132211	rs111536178	A	AAAAGTTG	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.88;ReadPosRankSum=-0.586;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chr16	15133783	rs34345533	C	CT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.838;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:61,26:0.30:87
chr16	15133889	rs14347	T	G	2084.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:217,114:0.34:331
chr16	15135071	rs7498279	G	A	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	15135269	rs9926473	T	G	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	15149597	.	C	T	2130.77	.	AC=1;AF=0.500;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	0/1:55,96:0.64:151
chr16	15155898	rs2966157	T	C	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	15159022	.	C	CA	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DP=311;ExcessHet=3.0103;FS=0.631;MLEAC=1;MLEAF=0.500;MQ=59.14;MQRankSum=0.701;QD=1.07;ReadPosRankSum=0.523;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:227,63:0.22:290
chr16	15166891	rs2941256	T	C	2770.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:62,128:0.67:190
chr16	15168760	rs4985147	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr16	15170452	rs2966183	C	A	2812.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;MQ=59.34;set=Intersection	GT:AD:AF:DP	0/1:79,125:0.61:204
chr16	15173746	rs2941253	G	A	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	15178688	rs8061051	C	A	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	15187912	rs11075256	G	C	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.711;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-2.103;QD=4.76;ReadPosRankSum=1.508;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:91,41:0.31:132
chr16	15493046	rs153001	G	A	69.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr16	15494721	rs62039092	T	C	161.74	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr16	15494794	rs144631444	G	T	107.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	15528354	.	A	AGGCGCTCCCGGGCGCTGGCGGGCGCTGGCGGC	1198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=0.817;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:136,32:0.19:168
chr16	15596142	rs12448500	G	C	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	15626831	rs12918517	C	T	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,9:0.26:35
chr16	15626960	rs12919246	A	G	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=0.838;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:69,20:0.22:89
chr16	15680642	rs2071332	C	T	1326.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:152,74:0.33:226
chr16	15695059	rs2071331	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:77,33:0.30:110
chr16	15696480	rs71293163	A	AAGGAAAGAAGGAGGGAGGCAGAG	1754.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=54.84;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	15705605	rs7185421	A	G	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:47,27:0.36:74
chr16	15718591	rs2071333	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr16	15724113	rs3752422	C	T	860.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:84,49:0.37:133
chr16	15727459	rs5815838	AT	A	464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.279;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.836;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.999;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:59,40:0.40:99
chr16	15732981	rs377230821	C	T	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:151,78:0.34:229
chr16	15771601	rs6498567	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:53,37:0.41:90
chr16	15781054	rs8044738	A	G	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:118,72:0.38:190
chr16	15811023	rs1050163	C	T	4029.77	.	AC=1;AF=0.500;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	0/1:463,237:0.34:700
chr16	15811062	rs1050162	C	T	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:457,227:0.33:684
chr16	15813211	rs11646134	G	T	935.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:84,48:0.36:132
chr16	15813633	rs17284411	G	A	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,27:0.39:70
chr16	15813945	rs2075512	C	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr16	15818141	rs2075511	A	C	893.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.641;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.66;ReadPosRankSum=0.371;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:104,54:0.34:158
chr16	15818310	rs11130	G	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:41,17:0.29:58
chr16	15818492	.	CG	C	567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DP=95;ExcessHet=3.0103;FS=5.782;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.610;QD=5.98;ReadPosRankSum=-0.034;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:68,27:0.28:95
chr16	15820863	rs16967494	C	T	5102.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:113,228:0.67:341
chr16	15838940	rs2384934	G	C	7653.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	15839034	rs1050113	G	A	4627.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:115,215:0.65:330
chr16	15843899	rs6498570	G	A	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	15850204	rs2272554	A	G	2168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.18;ReadPosRankSum=0.282;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:86,108:0.56:194
chr16	15853596	rs2280764	C	G	424.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr16	15865472	rs4781689	G	A	438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=1.401;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chr16	15869801	rs2072619	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:46,25:0.35:71
chr16	15917197	rs1050111	G	A	4561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.720;ClippingRankSum=0.000;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.74;ReadPosRankSum=-0.149;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:122,210:0.63:332
chr16	15917321	rs2272552	T	C	3081.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:75,145:0.66:220
chr16	15973654	rs8045082	G	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	15982258	rs3213476	A	G	15918.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr16	16108282	rs4148337	T	C	1204.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	16110244	rs185005	C	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.78;QD=45.17;SOR=2.211;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	16110253	rs246215	T	C	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.81;QD=42.05;SOR=2.174;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	16126758	rs924137	C	T	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.982;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.76;ReadPosRankSum=1.154;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr16	16126764	rs924138	T	C	580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=3.144;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.08;ReadPosRankSum=0.256;SOR=0.084;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr16	16130514	rs903880	C	A	4785.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.472;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.90;ReadPosRankSum=0.227;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:82,127:0.61:209
chr16	16130524	rs246232	C	G	4589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.03;ReadPosRankSum=-0.711;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:75,116:0.61:191
chr16	16138322	rs246221	T	C	980.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:14,44:0.76:58
chr16	16139714	rs35587	T	C	4639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=0.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.97;ReadPosRankSum=-1.177;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:92,218:0.70:310
chr16	16139878	rs35588	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:50,94:0.65:144
chr16	16161976	rs35604	G	A	8213.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	16162019	rs35605	T	C	11937.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr16	16184232	rs2074087	C	G	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	16200756	rs11075296	C	T	3805.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	16205141	rs4780592	A	G	13505.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=45.78;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chr16	16205141	.	ACA	GCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=1.0000;HP=2;HapScore=1;MGOF=44;MMLQ=23;MQ=60.03;NF=118;NR=71;PP=2947;QD=20;SC=GCTGGGTGGCACAGTGCTGGT;SbPval=0.55;Source=Platypus;TC=198;TCF=122;TCR=76;TR=189;WE=16205151;WS=16205131;set=Platypus	GT:AD:AF:DP	1/1:9,189:0.95:198
chr16	16205143	rs4780593	A	G	13877.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=46.11;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	16205161	rs4238623	G	A	15187.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr16	16205167	rs111263400	G	GTGGGGC	15636.73	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr16	16205449	rs3851716	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	16219596	rs113369901	G	GAA	6433.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr16	16230290	rs212087	G	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	16243973	rs3902401	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	16244129	rs212097	T	C	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	16251435	rs3896244	G	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	16253283	rs56822940	GC	G	7880.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=9.243;MLEAC=2;MLEAF=1.000;MQ=60.23;MQRankSum=0.375;QD=27.95;ReadPosRankSum=1.642;SOR=0.183;set=HC	GT:AD:AF:DP	1/1:6,276:0.98:282
chr16	16255195	rs3851721	T	G	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	16263837	rs7201980	T	C	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	16267079	rs11866320	A	G	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	16271357	rs6416668	T	C	15162.77	.	AC=2;AF=1.00;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	1/1:0,595:1.00:595
chr16	16272670	rs7500834	T	C	6904.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr16	16280921	rs8056103	T	C	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	16284272	rs7193932	C	T	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	16286614	rs6498618	G	C	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	16291816	rs58394656	G	C	4492.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.889;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.08;ReadPosRankSum=1.572;SOR=4.281;set=HC	GT:AD:AF:DP	1/1:1,159:0.99:160
chr16	16291858	rs12929920	G	C	2664.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=4.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=0.730;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:206,138:0.40:344
chr16	16291871	rs9940089	G	C	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:247,166:0.40:413
chr16	16291971	rs9940825	C	T	3888.77	.	AC=1;AF=0.500;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	0/1:373,209:0.36:582
chr16	16291983	rs9930886	A	G	3613.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:342,190:0.36:532
chr16	16349631	rs370050651	G	A	4283.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:127,191:0.60:318
chr16	17190040	rs3889206	G	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:81,50:0.38:131
chr16	17221423	rs4782034	C	T	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	17221755	rs3812961	T	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	17228368	rs12708815	G	A	6813.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr16	17294295	rs11075341	C	T	1018.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr16	17432427	rs4782002	T	C	2224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.57;ReadPosRankSum=1.039;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:175,119:0.40:294
chr16	17451987	rs11422866	C	CT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.990;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.443;QD=5.29;ReadPosRankSum=1.679;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr16	18549711	.	C	CAA	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=3.068;MLEAC=1;MLEAF=0.500;MQ=48.17;MQRankSum=-4.019;QD=7.19;ReadPosRankSum=-0.697;SOR=2.170;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr16	18593648	.	GA	G	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.733;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.71;MQRankSum=-3.456;QD=0.55;ReadPosRankSum=0.307;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:123,34:0.22:157
chr16	18603809	rs200315843	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.040;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.53;MQRankSum=-0.249;QD=2.34;ReadPosRankSum=0.291;SOR=0.387;set=HC	GT:AD:AF:DP	0/1:49,10:0.17:59
chr16	18604044	rs190219338	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:177,80:0.31:257
chr16	18804737	rs2650628	C	T	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.51;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	18823192	rs2291662	A	G	9735.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr16	18823379	rs2606556	T	C	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	18839362	rs12445870	T	C	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr16	18839496	rs12448649	G	C	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	18849858	rs35168818	C	T	6343.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	18858727	rs2650615	A	C	5667.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr16	18860472	rs12931729	T	C	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	18861335	rs2650613	A	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	18865324	rs59703706	ATAGGAGG	AAGGAGG,A	2179.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	1/1:1.00:50
chr16	18865326	rs58740437	AGGAGGC	A	2178.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=1.958;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	18865332	.	C	A	711	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=2;HapScore=1;MGOF=3;MMLQ=27;MQ=60.0;NF=11;NR=27;PP=711;QD=19.6255582249;SC=GCATAGGAGGCTCCTACTGTC;SbPval=0.49;Source=Platypus;TC=40;TCF=11;TCR=29;TR=38;WE=18865340;WS=18865314;set=Platypus	GT:AD:AF:DP	1/1:2,38:0.95:40
chr16	19041491	rs4381586	T	C	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	19041595	rs28583298	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:81,32:0.28:113
chr16	19046960	rs12933286	T	C	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:42,97:0.70:139
chr16	19049378	rs8043993	A	G	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:162,68:0.30:230
chr16	19051520	rs11074355	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.06;ReadPosRankSum=-0.437;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr16	19056069	rs55792501	A	G	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	19056769	rs12051270	G	A	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:118,49:0.29:167
chr16	19067933	rs17854511	G	A	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:124,62:0.33:186
chr16	19079095	rs4531717	T	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	19080184	rs4630530	C	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=25.80;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	19080227	rs75015998	C	CTG	1083.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	19083221	rs4782202	A	G	5889.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	19085298	rs11074359	C	T	5470.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	19183957	rs113855661	C	CT	1300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.010;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.612;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=6.85;ReadPosRankSum=0.813;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:88,102:0.54:190
chr16	19222713	rs229018	T	G	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:93,125:0.57:218
chr16	19222946	rs10716359	AT	A	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr16	19236181	rs2072076	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:59,33:0.36:92
chr16	19278429	rs11379176	T	TAAA	171.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=21.49;ReadPosRankSum=0.319;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr16	19310092	rs1548450	T	C	2653.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.90;ReadPosRankSum=1.302;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:295,155:0.34:450
chr16	19315621	rs16971804	C	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:14,11:0.44:25
chr16	19333111	rs8049175	T	C	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	19333153	rs8047832	A	C	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	19333224	rs8048432	G	A	5147.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	19333241	rs6497343	G	C	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	19455284	rs8052298	T	C	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	19455318	rs144130376	AATGGATGG	A	3256.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;MQ=60.94;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	19455615	rs4782247	G	A	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	19460842	rs6497373	A	G	9928.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr16	19471665	rs6497375	T	C	10009.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr16	19481234	rs4444328	T	G,TG	2227.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;set=Intersection	GT:AF:DP	1/2:0.79,0.21:76
chr16	19503598	rs1475962	C	T	5665.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	19503770	rs1967950	T	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.45;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	19503773	rs1967951	T	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	19505406	rs1475964	T	C	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	19505730	rs2245423	T	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	19505751	rs2856608	G	A	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	19508573	rs2187659	A	G	3394.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.91;SOR=2.055;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	19508583	rs2187660	C	G	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=2.239;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	19509333	rs2245086	C	T	7345.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	19547747	rs226891	C	G	9230.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	19553183	rs17325092	T	C	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr16	19580490	rs62026186	T	C	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	19589695	rs35605554	C	CA	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=-1.208;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr16	19598562	rs111461972	G	A	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.238;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	19619602	rs11291600	CT	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.213;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.769;QD=1.08;ReadPosRankSum=-2.246;SOR=0.434;set=HC	GT:AD:AF:DP	0/1:81,30:0.27:111
chr16	19640099	rs138081043	TTTTA	T	985.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.566;QD=9.39;ReadPosRankSum=-1.864;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:74,31:0.30:105
chr16	19653534	rs11647156	A	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:26,8:0.24:34
chr16	19653700	rs11643482	T	C	1495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.25;ReadPosRankSum=0.703;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:192,93:0.33:285
chr16	19663269	rs875648	T	C	1994.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:205,109:0.35:314
chr16	19680414	rs957675	C	T	270.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr16	19680546	rs957676	T	C	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.113;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=3.137;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.549;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:119,46:0.28:165
chr16	19693729	rs3815036	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:53,25:0.32:78
chr16	19702709	.	C	G	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=-0.711;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:127,45:0.26:172
chr16	19716505	rs739565	A	G	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646;ClippingRankSum=0.000;DB;DP=421;ExcessHet=3.0103;FS=0.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-1.616;QD=3.99;ReadPosRankSum=-0.879;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:305,116:0.28:421
chr16	19726275	rs11640454	C	T	1478.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr16	19799962	rs4782283	T	A	197.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	19868687	rs2729	G	C	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	19884285	rs2240047	C	T	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr16	19896574	rs118036357	C	T	5630.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:110,246:0.69:356
chr16	20043330	rs2147865	T	C	3625.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr16	20052123	rs1379575	G	A	4847.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	20084743	rs34142406	G	A	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:60,49:0.45:109
chr16	20113706	rs72774649	G	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:30,61:0.67:91
chr16	20322425	rs11647569	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	20322439	rs11642182	A	G	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	20334807	rs10555368	ACC	A,AC	5699.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=281;set=Intersection	GT:AF:DP	1/2:0.21,0.77:235
chr16	20334932	rs4393582	G	A	3100.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	20359633	rs28544423	C	T	6724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660;ClippingRankSum=0.000;DB;DP=530;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=-1.455;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:220,310:0.58:530
chr16	20359831	rs13335818	C	T	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:124,180:0.59:304
chr16	20360907	rs116892778	G	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chr16	20360993	rs71149135	G	GCCACATTC	3744.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:78,92:0.54:170
chr16	20361018	.	G	GA	2933	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=3;HapScore=1;MGOF=32;MMLQ=23;MQ=60.09;NF=22;NR=40;PP=2933;QD=20;SC=GTAATGCGCAGAATTCCTATA;SbPval=0.43;Source=Platypus;TC=118;TCF=39;TCR=79;TR=62;WE=20361026;WS=20361008;set=Platypus	GT:AD:AF:DP	1/0:56,62:0.53:118
chr16	20361087	rs111285796	T	TTCTGCCAGA	5582.73	.	AC=1;AF=0.500;AN=2;DB;DP=274;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:102,139:0.58:241
chr16	20361950	rs36060036	C	T	5541.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:201,267:0.57:468
chr16	20386115	rs4522429	T	C	5276.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:160,249:0.61:409
chr16	20410488	rs7185940	G	A	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:120,237:0.66:357
chr16	20410547	rs9926580	C	T	4324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=2.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=0.366;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:90,193:0.68:283
chr16	20410669	rs9928648	A	G	679.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:8,27:0.77:35
chr16	20422709	rs9927595	A	G	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr16	20423033	rs111864451	G	A	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr16	20430674	rs112760108	T	C	3300.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:89,159:0.64:248
chr16	20432605	rs59025904	A	G	1848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.476;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.068;QD=13.02;ReadPosRankSum=0.961;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:52,90:0.63:142
chr16	20432732	rs113494620	G	A	295.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chr16	20435262	rs12103211	T	G	2748.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:104,131:0.56:235
chr16	20439070	rs12921615	A	G	5518.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:144,246:0.63:390
chr16	20439199	rs11859961	G	A	5332.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:146,245:0.63:391
chr16	20439202	rs117080231	T	C	2734.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:236,142:0.38:378
chr16	20440953	rs12931611	A	G	475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-6.064;QD=7.55;ReadPosRankSum=3.337;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:35,28:0.44:63
chr16	20441020	rs12932087	G	A	613.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.91;MQRankSum=-7.241;QD=6.20;ReadPosRankSum=-2.481;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:65,34:0.34:99
chr16	20441077	rs12931877	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-7.040;QD=3.94;ReadPosRankSum=0.302;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr16	20441084	rs8063682	T	C	207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-6.742;QD=3.85;ReadPosRankSum=1.455;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:45,9:0.17:54
chr16	20442510	rs35468793	C	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:71,106:0.60:177
chr16	20442653	rs34985819	G	A	1568.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr16	20448330	rs11646020	A	G	1973.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:57,95:0.62:152
chr16	20448351	rs71384450	C	T	2807.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:69,127:0.65:196
chr16	20448520	rs7499667	T	C	6136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.262;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=2.405;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-2.707;QD=19.18;ReadPosRankSum=-1.697;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:156,164:0.51:320
chr16	20448527	rs7499668	T	C	6097.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.125;ClippingRankSum=0.000;DB;DP=307;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-3.387;QD=19.86;ReadPosRankSum=-2.264;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:152,155:0.50:307
chr16	20451054	rs199540360	C	G	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.773;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=47.83;MQRankSum=-2.801;QD=4.91;ReadPosRankSum=0.000;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr16	20451086	rs112873171	G	T	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=6.965;MLEAC=1;MLEAF=0.500;MQ=48.22;MQRankSum=-2.066;QD=6.14;ReadPosRankSum=-1.368;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	20471364	rs6497489	T	C	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr16	20476852	rs7187246	T	C	2225.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:83,104:0.56:187
chr16	20477163	rs7186805	G	C	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.840;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=9.947;MLEAC=1;MLEAF=0.500;MQ=56.43;MQRankSum=-3.308;QD=18.90;ReadPosRankSum=0.315;SOR=3.345;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chr16	20477163	.	GTA	CTC	851	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=2;HapScore=3;MGOF=6;MMLQ=28;MQ=55.9;NF=0;NR=16;PP=851;QD=56.5292421789;SC=ATGCTGTCCTGTATCATATGA;SbPval=1.0;Source=Platypus;TC=34;TCF=3;TCR=31;TR=16;WE=20477173;WS=20477153;set=Platypus	GT:AD:AF:DP	1/0:18,16:0.47:34
chr16	20477165	rs7186307	A	C	585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.969;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.495;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=-3.176;QD=19.53;ReadPosRankSum=0.600;SOR=3.228;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr16	20480818	rs28615302	T	C	3417.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:59,143:0.71:202
chr16	20482368	rs1827711	A	G	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr16	20482623	rs2271060	G	T	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:76,190:0.71:266
chr16	20482790	rs2271062	C	A	1524.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr16	20486913	rs1634305	G	T	2006.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:34,85:0.71:119
chr16	20487125	rs1629314	T	G	1065.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr16	20488696	rs1700805	A	G	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.83;MQRankSum=-2.745;QD=17.38;ReadPosRankSum=-0.840;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:38,81:0.68:119
chr16	20488803	rs1634306	T	A	1062.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.141;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.54;MQRankSum=-0.567;QD=6.18;ReadPosRankSum=0.085;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:112,60:0.35:172
chr16	20489868	rs1634309	A	C	4426.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:88,199:0.69:287
chr16	20490068	rs1634310	A	C	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:27,36:0.57:63
chr16	20492000	rs146233716	A	G	2341.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.27;QD=33.45;SOR=4.468;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	20492304	rs1700809	A	T	1572.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.986;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-2.091;QD=21.54;ReadPosRankSum=0.514;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:32,41:0.56:73
chr16	20492307	rs1700810	G	A	1543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.940;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=4.982;MLEAC=1;MLEAF=0.500;MQ=54.99;MQRankSum=-1.989;QD=22.70;ReadPosRankSum=0.640;SOR=1.577;set=HC	GT:AD:AF:DP	0/1:30,38:0.56:68
chr16	20492316	rs1617049	C	T	1277.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.614;MLEAC=1;MLEAF=0.500;MQ=53.74;MQRankSum=-1.974;QD=23.23;ReadPosRankSum=0.586;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:23,32:0.58:55
chr16	20498079	rs2072080	T	G	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.941;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=7.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.925;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr16	20570661	rs62035059	T	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.16;QD=28.85;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	20647921	rs62033279	C	T	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	20749461	rs9788809	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	20750498	rs34908456	AT	A	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=2.959;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr16	20753123	rs234271	T	C	10748.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr16	20792188	rs5715	T	C	9337.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr16	20796508	rs8058758	T	C	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	20803249	.	G	GA	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.414;QD=0.89;ReadPosRankSum=-0.545;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr16	20810067	rs3213646	T	C	3548.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	20810730	rs7198770	A	G	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:193,103:0.35:296
chr16	20811681	rs2301771	C	T	14781.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr16	20824509	rs138180409	C	T	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:214,101:0.32:315
chr16	20824666	.	CT	C	428.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=8.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.118;SOR=1.819;set=HC	GT:AD:AF:DP	0/1:34,52:0.60:86
chr16	20824697	rs34169933	A	AG	2210.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	20827647	rs5816137	AT	A	738.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;MQRankSum=1.018;QD=12.11;ReadPosRankSum=0.343;SOR=1.218;set=HC	GT:AD:AF:DP	1/1:8,53:0.87:61
chr16	20855309	rs9929443	A	G	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	20860897	rs6654	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	20873767	rs7187522	T	G	12079.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr16	20956098	.	GAC	G	147.73	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,9:0.32:28
chr16	20986506	rs3115438	C	T	331.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr16	20999464	rs4783517	C	A	1573.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr16	21008690	rs3115446	T	C	5846.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:156,269:0.63:425
chr16	21030897	rs3095922	T	C	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	21035826	rs330135	G	C	477.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr16	21069645	rs72780846	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:4,17:0.81:21
chr16	21136477	rs7191215	A	G	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:65,91:0.58:156
chr16	21185384	rs1046480	G	A	2686.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:84,123:0.59:207
chr16	21190853	rs1063087	A	C	857.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.063;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.222;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:144,52:0.27:196
chr16	21210006	rs7189430	C	T	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr16	21215672	rs2075526	A	G	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,59:0.31:188
chr16	21221324	rs13331814	T	G	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:12,45:0.79:57
chr16	21222596	rs2075519	C	A	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.315;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-2.565;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:59,19:0.24:78
chr16	21222672	rs2075520	C	A	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:71,118:0.62:189
chr16	21222941	rs2075521	C	A	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:37,23:0.38:60
chr16	21245115	rs373056109	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:63,93:0.60:156
chr16	21289004	rs72782846	C	T	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr16	21328374	rs140207112	C	T	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:79,145:0.65:224
chr16	21388110	rs2686119	T	C	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,89:0.99:90
chr16	21396859	rs368310563	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.003;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.19;MQRankSum=-6.958;QD=0.46;ReadPosRankSum=-1.480;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:118,33:0.22:151
chr16	21397273	rs369341030	CTG	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.609;MLEAC=1;MLEAF=0.500;MQ=50.27;MQRankSum=-0.227;QD=4.57;ReadPosRankSum=2.488;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr16	21531111	rs7197243	T	C	828.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.098;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=56.77;MQRankSum=-4.421;QD=4.16;ReadPosRankSum=1.177;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:146,53:0.27:199
chr16	21531494	rs42138	T	C	8483.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:75,363:0.83:438
chr16	21531609	rs42139	C	T	2433.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:100,111:0.53:211
chr16	21531681	rs42140	C	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:29,59:0.67:88
chr16	21558789	rs201233292	G	A	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.011;ClippingRankSum=0.000;DB;DP=959;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=0.221;QD=1.02;ReadPosRankSum=-1.074;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:809,147:0.15:956
chr16	21608472	rs194548	G	A	467.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chr16	21623944	.	CT	C	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.281;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.395;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:62,41:0.40:103
chr16	21652720	rs1055740	A	G	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	21658266	rs3091404	C	T	4243.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:2,160:0.99:162
chr16	21689791	rs215894	T	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	21696074	.	ATTATTATTATTATTT	A	161.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.637;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=63.71;MQRankSum=-0.000;QD=17.97;ReadPosRankSum=0.712;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr16	21696080	rs68184103	ATTATTATTT	A	72.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.732;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.71;MQRankSum=-0.000;QD=9.09;ReadPosRankSum=-0.414;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,3:0.38:8
chr16	21730449	rs215901	C	T	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	21732553	rs35961471	TAC	T	359.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.24;ReadPosRankSum=-0.610;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:12,20:0.62:32
chr16	21732575	rs35864988	C	T	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-1.133;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr16	21732836	rs8060224	A	G	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.448;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=1.525;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:50,29:0.37:79
chr16	21739430	rs4408531	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:63,32:0.34:95
chr16	21747556	rs56065183	C	T	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:61,28:0.31:89
chr16	21747738	rs17251310	A	G	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:137,84:0.38:221
chr16	21781496	rs199973756	T	TA	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.389;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=2.047;MLEAC=1;MLEAF=0.500;MQ=47.35;MQRankSum=-2.514;QD=2.07;ReadPosRankSum=-1.586;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:72,26:0.27:98
chr16	21809188	rs201821278	T	TAA	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-0.852;QD=3.90;ReadPosRankSum=0.804;SOR=0.791;set=HC	GT:AD:AF:DP	0/1:32,19:0.37:51
chr16	21821976	rs148768203	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.35;MQRankSum=2.338;QD=3.61;ReadPosRankSum=0.649;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr16	21821986	rs199544209	A	AAC	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr16	21822198	rs185502917	A	G	2113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.342;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=11.61;ReadPosRankSum=1.624;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:75,107:0.59:182
chr16	21970546	rs2967178	T	C	2869.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	21972627	rs138762152	C	T	1665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.15;ReadPosRankSum=0.806;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:97,85:0.47:182
chr16	21992122	rs2965803	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	22012146	rs143239876	AATG	A	715.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.001;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.755;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=14.31;ReadPosRankSum=1.523;SOR=1.218;set=HC	GT:AD:AF:DP	0/1:22,28:0.56:50
chr16	22018845	rs35256986	T	C	4776.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:393,256:0.39:649
chr16	22128052	rs11649656	TT	GC	10861.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr16	22128196	rs80032231	C	A	1978.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:65,89:0.58:154
chr16	22137603	rs55732851	G	A	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:81,39:0.33:120
chr16	22144578	rs1105928	A	C	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr16	22155629	rs9937453	A	G	1634.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:167,91:0.35:258
chr16	22161136	rs1991020	T	C	4188.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr16	22178256	rs6497575	G	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:152,90:0.37:242
chr16	22192784	rs55969568	G	A	1812.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:183,102:0.36:285
chr16	22198157	rs146454107	T	TCCCTCCCTTCCTACCTCTCCCCAC	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=5.990;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=3.883;QD=8.83;ReadPosRankSum=-2.240;SOR=1.898;set=HC	GT:AD:AF:DP	0/1:41,18:0.31:59
chr16	22255898	rs2303188	C	T	2034.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:153,101:0.40:254
chr16	22261900	rs2303187	G	A	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.81;ReadPosRankSum=-0.469;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:106,37:0.26:143
chr16	22262514	rs2303186	C	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:183,121:0.40:304
chr16	22269867	rs4783453	A	G	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr16	22328094	rs2290830	G	T	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	22339789	rs371225216	G	A	3475.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:94,154:0.62:248
chr16	22448133	rs56330751	CA	C	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=0.487;QD=3.16;ReadPosRankSum=-0.495;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:42,30:0.42:72
chr16	22579730	.	A	ATGTG	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.221;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-0.978;QD=8.12;ReadPosRankSum=0.520;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr16	22580611	rs200617466	T	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.229;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=2.248;MLEAC=1;MLEAF=0.500;MQ=41.70;MQRankSum=0.860;QD=2.41;ReadPosRankSum=-0.521;SOR=0.215;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr16	22826339	rs208951	A	G	5460.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:136,241:0.64:377
chr16	22844383	rs71378486	G	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:50,30:0.38:80
chr16	22926511	rs35682499	A	G	4590.77	.	AC=1;AF=0.500;AN=2;DB;DP=747;set=Intersection	GT:AD:AF:DP	0/1:493,252:0.34:745
chr16	22926956	rs8063925	G	T	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr16	23079353	rs8047644	T	C	1216.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	23080634	rs10083789	C	A	13207.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr16	23205657	rs4247210	G	C	607.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr16	23221183	rs5740	A	G	5857.77	.	AC=1;AF=0.500;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	0/1:176,279:0.61:455
chr16	23221238	rs4281710	A	G	3328.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:97,151:0.61:248
chr16	23223233	rs9941210	G	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr16	23223262	rs9941215	G	A	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr16	23223300	rs9931527	T	C	1527.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:44,72:0.62:116
chr16	23224106	rs12708649	T	C	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:78,164:0.68:242
chr16	23224416	rs13306653	G	A	2921.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.574;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.32;ReadPosRankSum=-2.586;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:71,133:0.65:204
chr16	23224517	rs13306654	T	G	3029.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.09;ReadPosRankSum=1.444;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:78,137:0.64:215
chr16	23225984	rs11643517	A	G	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,69:0.66:105
chr16	23226787	rs5723	C	G	4088.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:115,175:0.60:290
chr16	23360199	rs238547	T	C	2538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.65;ReadPosRankSum=0.467;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:300,149:0.33:449
chr16	23400194	rs250587	G	A	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:40,65:0.62:105
chr16	23400494	rs250586	C	A	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:1,39:0.97:40
chr16	23456578	rs540719	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:15,29:0.66:44
chr16	23457290	rs71379679	TA	T	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.654;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.951;QD=5.43;ReadPosRankSum=0.313;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:26,38:0.59:64
chr16	23486197	rs11074559	A	G	350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.238;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=-1.389;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:40,20:0.33:60
chr16	23489711	rs1135045	C	G	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:35,27:0.44:62
chr16	23490353	rs4968008	T	G	1888.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:261,118:0.31:379
chr16	23498305	.	G	GT	53.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=3.090;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.349;QD=4.89;ReadPosRankSum=1.215;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr16	23506940	rs722069	G	A	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:27,22:0.45:49
chr16	23521643	rs1071685	G	C	1353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.13;ReadPosRankSum=0.300;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:142,79:0.36:221
chr16	23521750	rs2285522	T	C	310.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=1.569;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:54,23:0.30:77
chr16	23521780	rs2285521	C	T	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr16	23533008	rs11074565	G	A	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=1.192;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:58,18:0.24:76
chr16	23533111	rs62031460	C	T	941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.940;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=4.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.038;SOR=1.036;set=HC	GT:AD:AF:DP	0/1:147,56:0.28:203
chr16	23535680	rs1468138	A	C	1349.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:99,68:0.41:167
chr16	23536366	rs6497670	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chr16	23536531	rs75133940	C	T	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.99;ReadPosRankSum=0.997;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:121,41:0.25:162
chr16	23536684	rs6497671	T	C	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:134,57:0.30:191
chr16	23540798	rs2072062	C	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:146,82:0.36:228
chr16	23541223	rs2072061	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:92,39:0.30:131
chr16	23546561	rs2073951	G	C	1393.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:124,77:0.38:201
chr16	23555726	rs2369009	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:40,28:0.41:68
chr16	23557718	rs7196534	T	C	825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.332;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:98,49:0.33:147
chr16	23557790	rs4968019	T	C	452.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-1.929;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:61,31:0.34:92
chr16	23563501	rs7187920	C	T	778.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.16;ReadPosRankSum=-2.246;SOR=0.961;set=HC	GT:AD:AF:DP	0/1:104,47:0.31:151
chr16	23573705	rs35228710	CAG	C	1063.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr16	23573833	rs152460	A	C	1016.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:14,43:0.75:57
chr16	23581678	rs152457	A	G	852.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr16	23606895	rs240744	G	T	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	23607079	rs3760109	G	T	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr16	23615042	.	T	TA	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.703;QD=1.30;ReadPosRankSum=-1.244;SOR=0.336;set=HC	GT:AD:AF:DP	0/1:66,20:0.23:86
chr16	23625463	rs249936	A	T	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	23634521	rs35378559	CTT	C	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.888;ClippingRankSum=-0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.13;ReadPosRankSum=-0.000;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,5:0.38:13
chr16	23768380	rs5816221	T	TG	990.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	23768802	rs80950	T	G	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	23848762	rs3729883	G	A	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	24043676	rs1971276	C	G	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.823;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.722;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr16	24104328	rs880824	A	G	1838.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;MQ=60.09;set=Intersection	GT:AD:AF:DP	0/1:42,72:0.63:114
chr16	24105669	rs7196765	G	A	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:78,152:0.66:230
chr16	24124365	rs147975795	A	G	2475.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:79,115:0.59:194
chr16	24135112	rs1013316	T	C	956.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr16	24185815	rs72154122	CT	C	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.742;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.976;QD=0.96;ReadPosRankSum=1.145;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:144,49:0.25:193
chr16	24357998	rs5816249	T	TG	3299.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	24557619	rs3214553	C	CT	97.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr16	24564879	rs72133882	GTA	G	1380.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	24567320	rs7202501	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr16	24570757	rs3815906	T	C	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr16	24570791	.	T	TC	495.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr16	24570844	rs45591839	G	A	1116.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;MQ=60.06;set=Intersection	GT:AD:AF:DP	0/1:106,62:0.37:168
chr16	24572884	rs34473709	CTT	C	463.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr16	24574691	rs66509757	CT	C	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.373;QD=2.34;ReadPosRankSum=-0.075;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:74,47:0.39:121
chr16	24578330	rs7194163	G	T	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr16	24578458	rs7195386	T	C	7920.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr16	24579397	rs7201851	T	C	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr16	24583406	rs7593	A	G	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:170,94:0.36:264
chr16	24675399	rs56765650	C	T	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:27,11:0.29:38
chr16	24676090	rs149786252	T	TCA	69.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr16	24741005	.	TCGG	T	3853.73	.	AC=2;AF=1.00;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	24741686	rs7202252	T	C	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr16	24801979	rs13336754	C	T	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:173,106:0.38:279
chr16	24807165	rs1030211	G	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	24820823	rs56154395	CA	C	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.412;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.678;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=6.99;ReadPosRankSum=-2.652;SOR=0.327;set=HC	GT:AD:AF:DP	0/1:21,32:0.60:53
chr16	24834233	rs2303085	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr16	24838988	rs12933971	C	T	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr16	24888646	rs11074656	T	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:145,79:0.35:224
chr16	24902194	rs274081	T	C	5782.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	24918048	rs17772929	C	T	5317.77	.	AC=1;AF=0.500;AN=2;DB;DP=762;set=Intersection	GT:AD:AF:DP	0/1:473,287:0.38:760
chr16	24919245	rs113206122	C	CAGGGA	300.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:41,10:0.20:51
chr16	24921854	rs201159355	A	AT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.851;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.855;QD=0.32;ReadPosRankSum=-2.140;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:113,24:0.18:137
chr16	24921945	rs17178990	C	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr16	24931691	rs55808472	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr16	24947131	rs72770485	T	G	1360.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:77,65:0.46:142
chr16	24953527	rs72770489	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:15,10:0.40:25
chr16	24955183	rs17624477	T	C	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:140,80:0.36:220
chr16	24958985	rs16974243	G	A	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,29:0.35:83
chr16	24975425	rs12599343	G	T	185.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	24980189	rs12103073	G	A	2967.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:73,137:0.65:210
chr16	24990136	rs58340349	G	GA	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	24990187	.	TAA	T	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.158;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.92;ReadPosRankSum=1.198;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:6,9:0.60:15
chr16	25043277	rs11074669	G	A	14093.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:1,534:1.00:535
chr16	25066321	rs67051289	A	AG	97	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=24.25;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	25066332	rs12924642	A	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.34;QD=25.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	25137289	rs7189229	G	C	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	25137385	rs11861481	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:118,45:0.28:163
chr16	25137449	rs7188975	A	T	2540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=5.769;QD=12.33;ReadPosRankSum=-1.346;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:82,124:0.60:206
chr16	25163017	rs139504024	G	GGTGTGT,GGTGTGTGT	2289.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.57;QD=38.16;SOR=5.464;set=HC	GT:AD:AF:DP	1/2:1,40,19:0.67,0.32:60
chr16	25172307	rs111379361	A	AT	569.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:11,34:0.76:45
chr16	25180610	rs6497812	G	A	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	25239805	rs2287798	G	C	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:39,94:0.71:133
chr16	25255080	rs141745999	T	TAAAACTCCTTGGTTTTGCACC	3969.73	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:54,87:0.62:141
chr16	25255506	rs11642611	C	T	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:81,130:0.62:211
chr16	25258035	rs11649280	A	G	5087.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:125,236:0.65:361
chr16	25263278	rs2112811	G	A	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:43,96:0.69:139
chr16	25264440	rs11643089	T	C	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr16	25268368	rs4787310	A	G	5492.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:169,260:0.61:429
chr16	25703700	.	TGCC	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.269;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.52;ReadPosRankSum=0.514;SOR=0.230;set=HC	GT:AD:AF:DP	0/1:69,8:0.10:77
chr16	25704145	rs2943336	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	25944544	rs117559033	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,31:0.42:73
chr16	25944700	rs4303490	A	G	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:138,115:0.45:253
chr16	27215267	rs877585	G	A	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	27215380	rs908382	A	C	5097.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	27222442	.	CT	C	317.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DP=138;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.239;QD=2.58;ReadPosRankSum=-1.911;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:75,48:0.39:123
chr16	27222618	rs62028352	C	T	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr16	27226437	rs8054431	G	T	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:92,84:0.48:176
chr16	27227122	rs7405158	T	C	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:64,31:0.33:95
chr16	27227168	rs11645703	T	G	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	27236403	rs2958	G	A	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr16	27237007	rs201449764	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr16	27238034	rs34940876	C	T	1651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.597;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.487;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-2.302;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:150,91:0.38:241
chr16	27238110	rs1127228	C	T	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=3.689;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.178;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:219,119:0.35:338
chr16	27244548	rs28456036	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	27245712	rs34939984	C	T	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:51,23:0.31:74
chr16	27246617	rs17856580	T	C	2895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=0.625;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:69,136:0.66:205
chr16	27253059	rs28363677	G	A	852.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	27269023	rs7201652	T	C	567.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr16	27356203	rs1805010	A	G	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=2.848;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=1.272;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:116,56:0.33:172
chr16	27356359	rs2074572	C	T	1034.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:62,49:0.44:111
chr16	27356398	rs2072130	C	T	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:41,41:0.50:82
chr16	27356667	rs3024560	T	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:109,50:0.31:159
chr16	27364158	rs3024610	C	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:7,12:0.63:19
chr16	27367334	rs4787423	C	T	3615.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=26.01;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	27367405	rs36125482	CT	C	152.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.097;ClippingRankSum=-0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.396;QD=7.65;ReadPosRankSum=-0.919;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr16	27367414	rs145435809	T	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.228;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.206;QD=3.94;ReadPosRankSum=0.366;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr16	27370932	rs138640688	AGTG	A	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	27371158	rs3024660	C	T	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=1.049;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	27414378	rs6498021	T	G	6663.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:1,251:1.00:252
chr16	27441283	rs179760	A	G	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	27456613	rs963154	G	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:39,53:0.58:92
chr16	27457158	rs3093375	T	G	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr16	27457518	rs3093377	C	G	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:20,46:0.70:66
chr16	27472772	rs2228248	C	T	3898.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:96,174:0.64:270
chr16	27473860	rs12932325	G	A	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:34,78:0.70:112
chr16	27474910	rs12919017	A	G	5299.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:162,250:0.61:412
chr16	27476548	rs12925626	G	A	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:41,94:0.70:135
chr16	27494675	rs232062	C	T	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:42,63:0.60:105
chr16	27501189	rs232067	C	T	1429.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:28,64:0.70:92
chr16	27506825	rs232071	G	A	1962.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:36,85:0.70:121
chr16	27510117	rs11452553	C	CA	3373.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	27512760	rs232072	T	C	1164.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chr16	27561584	rs4787969	G	A	1339.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:182,82:0.31:264
chr16	27629661	rs4787980	G	C	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:27,26:0.49:53
chr16	27642249	rs233453	A	G	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.952;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=6.927;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.328;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr16	27692835	rs12923861	G	A	1896.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:39,80:0.67:119
chr16	27709825	rs12920169	C	T	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr16	27713103	rs9923148	C	T	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.14;ReadPosRankSum=-0.604;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:39,43:0.52:82
chr16	27715377	rs34773854	AT	A	1796.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr16	27720201	rs12930355	C	T	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:33,69:0.68:102
chr16	27752135	rs12447120	C	T	3862.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:94,177:0.65:271
chr16	27752314	rs5816442	T	TC	630.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	27761040	rs61734902	C	T	1347.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:97,69:0.42:166
chr16	27772901	rs4787984	G	A	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr16	27777831	rs8043555	A	G	4570.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:2,179:0.99:181
chr16	27819065	rs1645358	C	T	116.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chr16	27861779	rs9923632	A	C	679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.87;ReadPosRankSum=0.562;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr16	27861785	rs9923715	C	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.22;ReadPosRankSum=0.831;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:29,19:0.40:48
chr16	27974418	rs2051742	T	C	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr16	28123226	rs205384	G	A	9065.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr16	28132951	rs33048	T	C	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	28133152	rs39998	C	A	2954.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	28137248	rs39631	C	A	4528.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	28143489	rs9930464	C	T	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.75;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	28157351	rs28379290	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr16	28167920	rs34751450	C	CAA	1029.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr16	28181306	rs28479048	A	G	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	28181378	rs9927275	C	G	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	28328916	rs113394773	C	T	1941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.793;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.213;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:158,102:0.39:260
chr16	28508716	rs40832	T	C	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	28600021	rs117985404	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:16,15:0.48:31
chr16	28603393	rs27742	T	C	187.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr16	28617485	rs1801030	C	T	10687.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	28618238	rs7499134	A	G	32450.77	.	AC=2;AF=1.00;AN=2;DB;DP=1224;set=Intersection	GT:AD:AF:DP	1/1:0,1220:1.00:1220
chr16	28618708	rs11648192	C	T	1186.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,54:0.58:93
chr16	28620800	rs3760091	C	G	5994.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:218,279:0.56:497
chr16	28621311	rs2077412	T	C	1284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=0.000;QD=7.38;ReadPosRankSum=0.472;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:105,69:0.40:174
chr16	28631314	rs141320733	T	TTGTGTG	1026.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chr16	28631360	rs28410083	A	T	896.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	28835900	rs12920514	G	A	3191.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:84,149:0.64:233
chr16	28837719	rs370101289	C	T	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr16	28838073	rs12448482	A	G	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:27,28:0.51:55
chr16	28842257	.	C	CA	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.293;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.467;QD=2.45;ReadPosRankSum=0.438;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:56,27:0.33:83
chr16	28842311	rs4344749	A	G	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=24.47;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr16	28844068	rs7498491	T	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr16	28845584	rs35725751	C	T	7289.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:137,314:0.70:451
chr16	28856819	rs8061877	C	T	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:90,178:0.66:268
chr16	28883327	rs28433345	T	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:40,45:0.53:85
chr16	28903656	rs6565261	C	A	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,87:0.67:129
chr16	28903763	rs200957871	CTG	C	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.301;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=0.973;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr16	28903764	.	TGTAA	T	432	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=1;NR=6;PP=432;QD=67.8571428571;SC=TGAGAAAGGCTGTAACCTTGG;SbPval=0.38;Source=Platypus;TC=30;TCF=2;TCR=28;TR=7;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:23,7:0.23:30
chr16	28903767	rs200961662	AAC	A	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.892;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.231;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:31,11:0.26:42
chr16	28903769	.	C	A	440	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=24;MQ=60.0;NF=2;NR=6;PP=440;QD=59.3464015684;SC=AAGGCTGTAACCTTGGCTCCT;SbPval=0.67;Source=Platypus;TC=37;TCF=10;TCR=27;TR=8;WE=28903777;WS=28903754;set=Platypus	GT:AD:AF:DP	1/0:29,8:0.22:37
chr16	28906084	rs9931989	G	C	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	28913787	rs7189927	T	C	2743.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	28915433	rs2071342	A	C	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:122,61:0.33:183
chr16	28915527	rs10499	G	A	18065.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr16	28922149	rs11646653	C	T	13307.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr16	28925978	rs3924376	T	C	11378.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	28944396	rs2904880	C	G	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr16	28944700	rs35979293	G	T	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:251,118:0.32:369
chr16	28962755	rs12449272	G	A	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chr16	28993049	rs6565300	A	C	6186.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	28993649	rs11301233	AC	A	4187.73	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:316,196:0.38:512
chr16	28995757	rs7140	C	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr16	28997997	rs1131543	G	A	8176.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:160,371:0.70:531
chr16	29001460	rs9929088	A	C	15369.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr16	29088128	rs67548829	TACAACTATTGCTGTTATACTAAAGACCAATAGAAATAGCAAGATTAATTAAGATACCAGTTGAAA	T	2141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.685;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=14.212;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=2.250;QD=9.08;ReadPosRankSum=-5.231;SOR=1.511;set=HC	GT:AD:AF:DP	0/1:168,68:0.29:236
chr16	29088221	rs2442141	A	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=4.664;MLEAC=1;MLEAF=0.500;MQ=49.34;MQRankSum=-4.391;QD=10.29;ReadPosRankSum=1.016;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:20,20:0.50:40
chr16	29102189	rs56374327	C	CT	1438.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.95;QD=25.69;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	29113263	rs149472124	C	T	2137.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:32,79:0.71:111
chr16	29113497	rs11366120	AT	A	3826.73	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:106,229:0.68:335
chr16	29127350	rs1540389	T	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr16	29142059	rs1642020	G	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:21,72:0.77:93
chr16	29142189	rs1642021	A	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr16	29142204	rs1642022	A	G	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr16	29150636	rs34323521	A	AC	163.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	29150785	rs1646119	G	A	1395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-1.005;QD=13.96;ReadPosRankSum=1.774;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:34,66:0.66:100
chr16	29332380	rs257878	T	C	4123.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	29375985	.	C	CT	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.013;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=7.188;MLEAC=1;MLEAF=0.500;MQ=53.57;MQRankSum=-7.211;QD=2.05;ReadPosRankSum=-0.348;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:135,45:0.25:180
chr16	29376395	rs370189806	C	T	719.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=56.34;MQRankSum=2.173;QD=4.74;ReadPosRankSum=-0.221;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:105,47:0.31:152
chr16	29376400	.	CTG	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.295;ClippingRankSum=0.000;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.35;MQRankSum=-6.070;QD=1.51;ReadPosRankSum=-0.777;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:112,24:0.18:136
chr16	29624247	rs28455095	C	A	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-8.349;QD=1.25;ReadPosRankSum=1.049;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:67,13:0.16:80
chr16	29644794	rs11150561	A	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:154,47:0.23:201
chr16	29645078	rs12597368	C	A	1452.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:176,79:0.31:255
chr16	29645104	rs35388990	CA	C	1577.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=457;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-0.668;QD=3.74;ReadPosRankSum=-0.438;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:254,168:0.40:422
chr16	29647700	rs200123374	C	T	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.979;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.90;MQRankSum=-1.696;QD=8.79;ReadPosRankSum=0.948;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chr16	29705854	rs9936468	C	T	1351.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	29708350	rs9932770	A	G	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	29790669	rs235634	T	A	8406.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=1.048;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	29790678	rs183527	T	G	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	29790767	rs235635	A	G	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	29790864	rs235636	G	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	29791561	rs235637	T	G	11973.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:2,449:1.00:451
chr16	29791721	rs235638	G	C	8705.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:2,326:0.99:328
chr16	29791818	rs35586094	TA	T	863.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	29809634	rs5816499	TACAC	T	744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=7.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.38;ReadPosRankSum=2.476;SOR=2.948;set=HC	GT:AD:AF:DP	0/1:4,19:0.83:23
chr16	29811319	rs235648	C	T	8073.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr16	29814234	rs2450399	G	A	5738.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr16	29817998	rs111993640	C	T	4900.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	29821744	rs2516825	G	A	11532.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,429:1.00:429
chr16	29821983	rs71650270	CT	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.467;QD=1.04;ReadPosRankSum=-0.370;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr16	29822841	rs11150572	A	C	1988.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	29823202	rs12923293	A	G	3248.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	29825126	rs11150573	T	C	11154.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:1,407:1.00:408
chr16	29859430	rs11350750	CT	C	467.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.179;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.31;ReadPosRankSum=-0.706;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:5,33:0.87:38
chr16	29872361	rs3815822	G	A	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:27,79:0.75:106
chr16	29888367	rs139403019	GTC	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=6.340;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=1.713;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:49,7:0.12:56
chr16	29906546	rs4787484	C	T	1582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-1.751;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:40,76:0.66:116
chr16	29907298	rs34549819	G	GT	1786.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:31,75:0.71:106
chr16	29908433	rs11649499	C	G	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	29910431	.	GTTT	G	824.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=1.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.74;ReadPosRankSum=2.446;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr16	29910518	rs11344	C	G	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr16	29912802	rs140411458	G	GGGT	4199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=4.168;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.522;QD=10.55;ReadPosRankSum=-0.114;SOR=0.903;set=HC	GT:AD:AF:DP	0/1:276,122:0.31:398
chr16	29918034	rs1129700	T	C	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr16	29923510	rs4548895	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr16	29934754	rs12596042	T	A	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:53,74:0.58:127
chr16	29937081	rs5816505	G	GA	3037.73	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,89:0.62:143
chr16	29979247	.	C	CA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.49;ReadPosRankSum=0.130;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:84,21:0.20:105
chr16	29982961	rs9932702	C	T	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.98;ReadPosRankSum=-0.197;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:27,38:0.58:65
chr16	29993108	rs11642046	C	G	11590.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:220,503:0.70:723
chr16	29994736	rs3814884	T	A	10662.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:223,439:0.66:662
chr16	29994922	rs3814883	C	T	41043.77	.	AC=1;AF=0.500;AN=2;DB;DP=2814;set=Intersection	GT:AD:AF:DP	0/1:905,1902:0.68:2807
chr16	29998200	rs4077410	A	G	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:61,107:0.64:168
chr16	30000901	rs3814881	G	A	4221.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:83,182:0.69:265
chr16	30016022	rs12928610	C	T	1898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=2.634;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:29,88:0.75:117
chr16	30017895	rs3814880	T	C	7753.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:161,358:0.69:519
chr16	30018500	rs3935873	C	T	11168.77	.	AC=1;AF=0.500;AN=2;DB;DP=767;set=Intersection	GT:AD:AF:DP	0/1:255,508:0.67:763
chr16	30018720	rs12921753	C	T	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,85:0.65:131
chr16	30021402	rs1140239	C	T	4928.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.374;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=4.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=-0.136;SOR=0.975;set=HC	GT:AD:AF:DP	0/1:101,204:0.67:305
chr16	30034558	.	G	A	403.77	.	AC=1;AF=0.500;AN=2;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr16	30037128	rs11544328	A	C	6240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.247;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=1.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=1.004;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:170,275:0.62:445
chr16	30093779	rs2278557	C	G	3540.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:81,154:0.66:235
chr16	30096470	.	G	GC	1316.73	.	AC=1;AF=0.500;AN=2;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr16	30098189	rs3833842	GTGA	G	5139.73	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:71,132:0.65:203
chr16	30119525	rs8061772	C	A	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:14,41:0.75:55
chr16	30119824	rs61764621	T	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr16	30134679	rs61764202	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:67,39:0.37:106
chr16	30198151	rs1132812	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.24;ReadPosRankSum=-1.957;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:145,37:0.20:182
chr16	30376691	rs4500754	G	A	6614.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:98,272:0.74:370
chr16	30377018	rs79962611	C	T	767.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:74,39:0.35:113
chr16	30380486	rs4238961	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr16	30386262	rs8046445	C	T	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	30390314	rs12447833	T	C	3937.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	30393660	rs4787643	G	A	16464.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr16	30393771	rs4788409	G	A	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	30407269	rs13333093	C	A	4606.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	30408765	rs12921440	C	T	4634.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr16	30410445	rs4788413	C	T	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,142:0.99:144
chr16	30424888	rs11314620	GT	G	1352.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	30485393	rs11574938	G	C	2162.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:175,111:0.39:286
chr16	30490854	rs11862597	G	A	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:21,72:0.77:93
chr16	30492690	rs10871452	A	C	750.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=10.653;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.811;QD=13.41;ReadPosRankSum=1.732;SOR=0.125;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr16	30495412	rs2285459	T	C	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:94,66:0.41:160
chr16	30495657	rs7197010	T	C	346.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:30,21:0.41:51
chr16	30500761	rs3087438	G	A	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:52,44:0.46:96
chr16	30505512	rs1978079	C	T	10451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=768;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=0.266;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:275,491:0.64:766
chr16	30505512	.	CA	TG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=233;NR=208;PP=2944;QD=20;SC=CCTAACTCCACACCCCACACA;SbPval=0.53;Source=Platypus;TC=718;TCF=380;TCR=338;TR=441;WE=30505521;WS=30505502;set=Platypus	GT:AD:AF:DP	0/1:277,441:0.61:718
chr16	30505513	rs4350585	A	G	29025.77	.	AC=2;AF=1.00;AN=2;DB;DP=770;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.89;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,766:1.00:766
chr16	30507972	rs28708641	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:30,12:0.29:42
chr16	30510571	rs1557672	C	T	2617.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:273,140:0.34:413
chr16	30518041	rs2230433	G	C	8351.77	.	AC=1;AF=0.500;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	0/1:216,380:0.64:596
chr16	30518096	rs2230434	C	T	6483.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:166,297:0.64:463
chr16	30536672	rs3751847	A	G	9059.77	.	AC=1;AF=0.500;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	0/1:233,408:0.64:641
chr16	30536918	rs10871453	C	G	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:108,191:0.64:299
chr16	30538259	rs3794703	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr16	30585139	rs142051127	TTAAA	T	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.024;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.56;ReadPosRankSum=-0.200;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chr16	30665449	.	C	CA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=-1.056;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:72,16:0.18:88
chr16	30724070	rs4889500	G	T	6969.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr16	30724221	rs4889501	C	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.31;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	30732406	rs1470129	C	G	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	30734963	rs4889502	C	A	19409.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr16	30762640	rs4889504	C	T	7959.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr16	30766247	rs9941201	G	A	5527.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	30768492	rs71820772	GCTCTGGC	G	2145.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	30770267	rs7188077	C	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	30770762	rs117306997	G	A	4467.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:97,198:0.67:295
chr16	30772040	rs4889505	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	30773822	rs1550477	T	C	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	30779716	rs7195142	A	G	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	30780828	rs4889506	A	G	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	30832463	rs6565205	A	C	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr16	30832475	rs6565206	T	C	10205.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	30832701	rs8045550	A	C	14356.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr16	30833246	rs9319587	C	T	4504.77	.	AC=1;AF=0.500;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	0/1:568,272:0.32:840
chr16	30833272	rs8046609	A	G	26108.77	.	AC=2;AF=1.00;AN=2;DB;DP=1004;set=Intersection	GT:AD:AF:DP	1/1:0,1001:1.00:1001
chr16	30833321	rs8046001	C	T	12372.77	.	AC=1;AF=0.500;AN=2;DB;DP=855;set=Intersection	GT:AD:AF:DP	0/1:288,566:0.66:854
chr16	30833425	rs4889510	G	C	5253.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	30905359	rs111620019	C	T	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	30964940	rs9926903	A	G	20656.77	.	AC=2;AF=1.00;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	1/1:0,750:1.00:750
chr16	30965308	rs11647243	G	A	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	30965549	rs35717321	A	AT	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=2.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-0.052;SOR=1.154;set=HC	GT:AD:AF:DP	0/1:66,23:0.26:89
chr16	30976129	rs117891062	T	A	15160.77	.	AC=1;AF=0.500;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	0/1:314,668:0.68:982
chr16	30999198	rs17849880	C	T	15759.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr16	30999369	rs149918713	C	T	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:236,136:0.37:372
chr16	31004812	rs12445568	T	C	12873.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr16	31004926	rs7194921	C	T	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	31012813	rs61239537	G	T	5860.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=4.717;MLEAC=2;MLEAF=1.000;MQ=59.61;MQRankSum=-0.150;QD=24.73;ReadPosRankSum=-0.577;SOR=1.423;set=HC	GT:AD:AF:DP	1/1:1,236:1.00:237
chr16	31044683	rs58726213	A	G	11549.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr16	31044897	rs12445650	G	A	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	31049155	rs55979739	A	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	31050023	rs732173	C	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.19;SOR=2.604;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	31050033	rs732172	C	T	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.25;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	31075708	rs2032917	C	G	15142.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr16	31090407	rs35713203	G	C	5585.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	31091209	rs3751855	T	C	4792.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,174:0.99:175
chr16	31092075	rs7196726	G	A	5683.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	31095171	rs11865038	C	T	3882.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	31095204	rs11864806	G	C	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	31095251	rs11864839	G	C	1972.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	31096164	rs7199949	G	C	3902.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	31097574	rs4889535	G	C	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	31122229	rs1549296	C	T	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	31131614	rs4527034	A	G	7009.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr16	31138445	rs72785553	G	A	15370.77	.	AC=2;AF=1.00;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr16	31141826	rs1549295	A	G	7842.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	31141880	rs1549294	A	G	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr16	31142271	rs17855606	A	G	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	31142381	rs2855479	A	G	2697.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	31142767	rs117219760	T	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chr16	31143993	rs45619735	C	T	11646.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr16	31151521	rs8047469	A	G	530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.606;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=0.901;SOR=0.286;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr16	31152717	rs889547	T	C	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	31153105	rs1549300	A	G	12469.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr16	31153780	rs889546	G	A	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	31154146	rs1549299	G	A	6591.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	31191482	rs929867	A	G	10029.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr16	31193942	rs741810	C	A	1710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.647;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:253,109:0.30:362
chr16	31196141	rs71771375	GTCTTTTTACTT	G	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr16	31196224	.	G	GT	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.903;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=-1.463;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:84,27:0.24:111
chr16	31230463	rs7186832	C	T	1844.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:36,81:0.69:117
chr16	31271545	rs11865830	G	A	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr16	31273129	rs3764327	T	C	4271.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:105,192:0.65:297
chr16	31284618	rs201225943	T	TA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.129;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.498;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:174,43:0.20:217
chr16	31289396	rs1143680	T	C	5585.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:141,268:0.66:409
chr16	31340368	rs55742763	G	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:15,18:0.55:33
chr16	31342608	rs7188189	T	C	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	31342788	rs111881239	C	CTTG	684.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,18:0.72:25
chr16	31343181	rs142861575	C	CGTGTGTGCGA	932.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr16	31367318	rs2230424	T	C	5545.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:136,266:0.66:402
chr16	31368816	rs11574635	G	C	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:9,24:0.73:33
chr16	31371193	rs4264407	C	G	9104.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr16	31371674	rs2230428	G	A	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr16	31380596	rs12930249	C	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.98;ReadPosRankSum=0.967;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,7:0.70:10
chr16	31384422	rs146920512	AAAGAAG	A	160.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:43,10:0.19:53
chr16	31384554	rs2070896	T	C	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:85,36:0.30:121
chr16	31392047	rs11574646	C	T	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:20,71:0.78:91
chr16	31392189	rs11150620	G	C	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=-0.022;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr16	31393308	rs2929	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:7,31:0.82:38
chr16	31404467	rs8050328	T	G	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:38,20:0.34:58
chr16	31404571	rs8050500	T	C	1644.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:236,101:0.30:337
chr16	31405463	rs112895789	A	G	607.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.066;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.10;ReadPosRankSum=0.816;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:47,28:0.37:75
chr16	31405467	.	A	G	975.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=1.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=4.271;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:32,52:0.62:84
chr16	31405736	rs62051538	C	G	312.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr16	31415004	rs56304025	C	T	2138.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:62,93:0.60:155
chr16	31422429	rs12444660	T	C	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	31426065	rs62051540	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr16	31427678	rs8056122	C	T	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:12,14:0.54:26
chr16	31435366	rs116943658	GA	AG	2113.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;JOINED;set=Intersection	GT:AD:AF:DP	0/1:77,57:0.43:134
chr16	31439239	.	G	GCCC	415.73	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.79;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	31439243	.	G	GCGCCCCGCGCGC	367.74	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.97;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	31439256	.	CA	C	210	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=1;HapScore=4;MGOF=180;MMLQ=22;MQ=52.76;NF=0;NR=5;PP=210;QD=48.6;SC=CCCCCCCCCGCAGCACCCCCC;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=5;WE=31439277;WS=31439249;set=Platypus	GT:AD:AF:DP	0/1:1,5:0.83:6
chr16	31439266	.	CCCCG	C	271	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=8;HapScore=4;MGOF=180;MMLQ=23;MQ=55.49;NF=0;NR=5;PP=271;QD=57.0;SC=CAGCACCCCCCCCCGCCCCCG;SbPval=1.0;Source=Platypus;TC=9;TCF=1;TCR=8;TR=5;WE=31439277;WS=31439249;set=Platypus	GT:AD:AF:DP	0/1:4,5:0.56:9
chr16	31470540	rs3813002	T	C	385.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chr16	31471378	rs9926717	A	G	1367.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:141,71:0.33:212
chr16	31503751	rs4536493	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:49,26:0.35:75
chr16	31519048	rs11861164	A	G	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	31539430	rs4296276	G	A	1877.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:51,88:0.63:139
chr16	31539934	rs17677	G	T	2401.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:33,105:0.76:138
chr16	31575186	rs7192364	C	T	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;MQ=59.86;set=Intersection	GT:AD:AF:DP	0/1:44,67:0.60:111
chr16	31613277	rs11865800	C	T	6886.77	.	AC=1;AF=0.500;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	0/1:139,306:0.69:445
chr16	31614439	rs4550471	C	T	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr16	31724836	rs2884713	T	C	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	31734197	rs34186495	G	GA	919.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:5,46:0.90:51
chr16	31770696	rs34487972	G	GA	3366.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	31770723	rs12921028	T	A	3963.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr16	31926619	rs3850114	G	A	4593.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.705;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr16	31987931	rs489120	G	A	630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=11.642;MLEAC=1;MLEAF=0.500;MQ=42.82;MQRankSum=0.119;QD=14.34;ReadPosRankSum=0.664;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:18,26:0.59:44
chr16	31993368	.	TCTC	T	2700.73	.	AC=1;AF=0.500;AN=2;DP=156;set=Intersection	GT:AD:AF:DP	0/1:81,71:0.47:152
chr16	32486756	rs28495417	A	G	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:8,30:0.79:38
chr16	32486962	rs28687622	T	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr16	32487712	rs62043362	G	A	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr16	32487933	rs28612238	G	A	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-1.604;QD=6.99;ReadPosRankSum=-1.825;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:21,16:0.43:37
chr16	32893880	rs149083075	G	A	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:146,100:0.41:246
chr16	32929099	.	G	A	639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.442;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=12.044;MLEAC=1;MLEAF=0.500;MQ=43.80;MQRankSum=-1.246;QD=14.88;ReadPosRankSum=-0.673;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:18,25:0.58:43
chr16	32936846	.	C	CCGG	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.81;MQRankSum=-2.823;QD=11.27;ReadPosRankSum=0.859;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chr16	33372666	rs4985326	C	T	3981.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.796;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=1.019;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-13.899;QD=16.52;ReadPosRankSum=0.328;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:140,101:0.42:241
chr16	33372673	rs4985325	T	C	4563.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-13.798;QD=16.13;ReadPosRankSum=0.065;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:164,119:0.42:283
chr16	33372677	rs4985324	C	T	4670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-13.433;QD=15.62;ReadPosRankSum=-0.644;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:171,128:0.43:299
chr16	33372694	rs4985323	T	C	2670.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:203,143:0.41:346
chr16	33379851	rs4566180	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr16	33379991	rs111258971	C	T	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.033;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=2.255;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=2.991;QD=3.78;ReadPosRankSum=-0.940;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:217,77:0.26:294
chr16	33380000	rs4536488	G	A	1480.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:219,88:0.29:307
chr16	33380074	rs28591591	A	G	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:217,102:0.32:319
chr16	33380234	rs57545706	C	T	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr16	33380263	rs57312786	C	G	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:26,16:0.38:42
chr16	33390329	rs12232434	G	C	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:99,64:0.39:163
chr16	33390399	rs4086208	C	T	2388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.229;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-11.309;QD=7.58;ReadPosRankSum=-0.327;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:188,127:0.40:315
chr16	33391213	rs4082382	C	T	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.120;MLEAC=1;MLEAF=0.500;MQ=56.50;MQRankSum=0.922;QD=16.65;ReadPosRankSum=2.063;SOR=1.414;set=HC	GT:AD:AF:DP	0/1:31,24:0.44:55
chr16	33391222	rs4082381	G	A	1068.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.095;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-0.444;QD=15.27;ReadPosRankSum=0.495;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:38,32:0.46:70
chr16	33391256	rs7193840	A	G	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,38:0.40:94
chr16	33391348	rs7188099	G	A	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.368;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.966;MLEAC=1;MLEAF=0.500;MQ=53.89;MQRankSum=-0.974;QD=6.89;ReadPosRankSum=1.061;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:105,64:0.38:169
chr16	33391395	rs7188064	G	A	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:169,83:0.33:252
chr16	33391415	rs357994	A	C	7278.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.81;QD=26.96;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr16	33392008	rs56739713	A	G	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.256;ClippingRankSum=0.000;DB;DP=352;ExcessHet=3.0103;FS=13.572;MLEAC=1;MLEAF=0.500;MQ=53.90;MQRankSum=4.049;QD=0.16;ReadPosRankSum=1.852;SOR=1.627;set=HC	GT:AD:AF:DP	0/1:309,43:0.12:352
chr16	33392148	rs200774570	T	C	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.817;ClippingRankSum=0.000;DB;DP=477;ExcessHet=3.0103;FS=42.934;MLEAC=1;MLEAF=0.500;MQ=57.15;MQRankSum=-19.622;QD=1.00;ReadPosRankSum=-10.343;SOR=4.473;set=HC	GT:AD:AF:DP	0/1:405,71:0.15:476
chr16	33392165	rs11150710	C	G	2616.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:239,145:0.38:384
chr16	33392215	rs11150709	G	A	1378.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:108,69:0.39:177
chr16	33392231	rs11150708	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:83,51:0.38:134
chr16	33395795	rs373875949	TA	T	778.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.149;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.448;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.97;ReadPosRankSum=1.468;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:20,19:0.49:39
chr16	33395797	.	A	AAAT	411.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=5.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.56;ReadPosRankSum=1.021;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:26,13:0.33:39
chr16	33395802	rs368088965	AT	A	1185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.887;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.56;ReadPosRankSum=-1.457;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:25,30:0.55:55
chr16	33395820	rs113700056	A	ACAG	1414.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.37;ReadPosRankSum=0.669;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:41,36:0.47:77
chr16	33395882	rs4887691	A	G	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:121,79:0.40:200
chr16	33395983	rs28650990	T	C	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr16	33408626	rs8059234	T	C	2268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-11.553;QD=4.77;ReadPosRankSum=-0.866;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:337,139:0.29:476
chr16	33408654	rs60406485	C	A	4008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-10.842;QD=8.33;ReadPosRankSum=-1.515;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:348,133:0.28:481
chr16	33408673	rs28415216	G	A	3813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.255;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-11.749;QD=8.40;ReadPosRankSum=-1.053;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:328,126:0.28:454
chr16	33408733	rs8058447	GC	AT	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;JOINED;set=Intersection	GT:AD:AF:DP	0/1:161,82:0.34:243
chr16	33408793	rs58465568	G	A	712.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:66,35:0.35:101
chr16	33410561	rs2632816	T	C	109.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.262;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-8.449;QD=1.25;ReadPosRankSum=0.507;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:75,13:0.15:88
chr16	33410688	rs56055507	C	T	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:287,115:0.29:402
chr16	33410777	rs74905055	G	T	4635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.695;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=4.183;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-18.076;QD=7.32;ReadPosRankSum=7.709;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:386,247:0.39:633
chr16	33424634	rs60026982	T	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=4.477;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-2.391;QD=16.01;ReadPosRankSum=2.204;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:33,24:0.42:57
chr16	33424637	rs62033013	AA	GG	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=2.678;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-2.444;QD=14.87;ReadPosRankSum=2.550;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr16	33424691	rs2632824	T	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:104,62:0.37:166
chr16	33424917	rs1906318	A	C	3557.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:323,184:0.36:507
chr16	33424950	rs2927971	C	T	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:295,172:0.37:467
chr16	33425005	rs79490911	T	C	3750.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:245,183:0.43:428
chr16	33530595	rs62037695	G	A	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	33534128	rs4247491	G	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:96,31:0.24:127
chr16	33534161	rs4247492	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.130;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=6.111;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-13.829;QD=1.85;ReadPosRankSum=0.975;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:162,32:0.16:194
chr16	33534194	rs112954068	C	CA	1071.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.098;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=9.492;MLEAC=1;MLEAF=0.500;MQ=57.26;MQRankSum=-15.257;QD=4.54;ReadPosRankSum=-1.661;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:198,38:0.16:236
chr16	33534198	rs146867572	C	A	1191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.767;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=8.856;MLEAC=1;MLEAF=0.500;MQ=57.00;MQRankSum=-15.470;QD=4.90;ReadPosRankSum=-2.427;SOR=1.232;set=HC	GT:AD:AF:DP	0/1:201,42:0.17:243
chr16	33534205	rs75274563	T	C	1360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.310;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=12.889;MLEAC=1;MLEAF=0.500;MQ=56.87;MQRankSum=-15.737;QD=5.40;ReadPosRankSum=-2.766;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:205,47:0.19:252
chr16	33534209	rs111304289	T	A	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.657;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=9.481;MLEAC=1;MLEAF=0.500;MQ=56.75;MQRankSum=-15.267;QD=5.53;ReadPosRankSum=-2.829;SOR=1.330;set=HC	GT:AD:AF:DP	0/1:203,49:0.19:252
chr16	33534212	rs74015084	C	T	1398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.838;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=6.914;MLEAC=1;MLEAF=0.500;MQ=56.71;MQRankSum=-15.234;QD=5.57;ReadPosRankSum=-2.427;SOR=1.197;set=HC	GT:AD:AF:DP	0/1:202,49:0.20:251
chr16	33534254	rs79370116	C	A	579.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.654;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=56.60;MQRankSum=-13.071;QD=2.83;ReadPosRankSum=3.291;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:161,44:0.21:205
chr16	33534278	rs10445205	A	G	579.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:124,41:0.25:165
chr16	33534325	rs375310866	CT	C	938.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:62,28:0.31:90
chr16	33534330	rs28594967	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:63,27:0.30:90
chr16	33534344	rs78083012	G	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.996;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=-8.215;QD=8.93;ReadPosRankSum=-2.215;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:58,22:0.28:80
chr16	33534346	rs375719784	G	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=55.75;MQRankSum=-8.030;QD=9.32;ReadPosRankSum=-1.952;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:57,20:0.26:77
chr16	33534352	rs78884180	G	C	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.025;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.203;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-7.387;QD=7.03;ReadPosRankSum=-0.395;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr16	33534354	rs74594913	C	T	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.753;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.358;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-6.949;QD=6.30;ReadPosRankSum=0.861;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:52,11:0.17:63
chr16	33534369	rs74800708	C	CAA	201.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:46,9:0.16:55
chr16	33539512	rs78972024	C	T	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:72,44:0.38:116
chr16	33539541	rs80334711	A	C	1009.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:119,62:0.34:181
chr16	33539588	rs79792636	T	G	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=31.757;MLEAC=1;MLEAF=0.500;MQ=54.84;MQRankSum=-12.671;QD=1.70;ReadPosRankSum=3.930;SOR=1.719;set=HC	GT:AD:AF:DP	0/1:252,56:0.18:308
chr16	33539634	rs76750868	C	T	588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.359;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=28.909;MLEAC=1;MLEAF=0.500;MQ=56.22;MQRankSum=-12.321;QD=1.78;ReadPosRankSum=-2.296;SOR=2.388;set=HC	GT:AD:AF:DP	0/1:289,41:0.12:330
chr16	33539648	rs56161129	C	A	290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.565;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=40.156;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-11.288;QD=0.95;ReadPosRankSum=-2.118;SOR=3.600;set=HC	GT:AD:AF:DP	0/1:278,28:0.09:306
chr16	33630336	rs492688	A	G	2660.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:67,124:0.65:191
chr16	33730559	.	G	A	1077.77	.	AC=1;AF=0.500;AN=2;DP=60;set=Intersection	GT:AD:AF:DP	0/1:14,46:0.77:60
chr16	33961323	.	G	A	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=40.338;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-4.829;QD=1.13;ReadPosRankSum=-0.965;SOR=2.658;set=HC	GT:AD:AF:DP	0/1:97,17:0.15:114
chr16	33961363	.	C	T	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.933;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=18.904;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=-3.323;QD=5.88;ReadPosRankSum=2.715;SOR=2.434;set=HC	GT:AD:AF:DP	0/1:96,25:0.21:121
chr16	33961370	rs72797450	A	C	1118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=24.924;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-5.099;QD=8.11;ReadPosRankSum=2.293;SOR=2.521;set=HC	GT:AD:AF:DP	0/1:101,37:0.27:138
chr16	33961400	rs113037697	G	T	1138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.676;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=10.688;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-4.647;QD=6.90;ReadPosRankSum=0.785;SOR=1.618;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr16	33961418	rs113700972	A	G	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=7.127;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-7.383;QD=6.05;ReadPosRankSum=-0.013;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:145,42:0.22:187
chr16	33961453	.	A	C	865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.481;ClippingRankSum=0.000;DP=249;ExcessHet=3.0103;FS=1.496;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-11.509;QD=3.55;ReadPosRankSum=1.235;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:205,39:0.16:244
chr16	33961467	rs74834425	G	A	810.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=3.325;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=-12.940;QD=2.82;ReadPosRankSum=2.080;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:251,37:0.13:288
chr16	33961471	rs137972467	C	A	767.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.386;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-13.685;QD=2.59;ReadPosRankSum=2.337;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:261,36:0.12:297
chr16	33961474	rs78784184	G	C	668.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-14.045;QD=2.17;ReadPosRankSum=1.938;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:271,37:0.12:308
chr16	33961481	rs366164	ATG	CCT	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.556;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=2.086;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-15.568;QD=2.98;ReadPosRankSum=0.219;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:283,44:0.13:327
chr16	33961499	rs75192280	CA	TG	1152.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=5.605;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-18.526;QD=2.84;ReadPosRankSum=-1.420;SOR=1.235;set=HC	GT:AD:AF:DP	0/1:353,53:0.13:406
chr16	33961506	.	A	T	1040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DP=431;ExcessHet=3.0103;FS=5.646;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-19.557;QD=2.42;ReadPosRankSum=-1.403;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:376,54:0.13:430
chr16	33961539	rs72797452	A	C	2367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.114;ClippingRankSum=0.000;DB;DP=637;ExcessHet=3.0103;FS=10.191;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-24.636;QD=3.72;ReadPosRankSum=-3.180;SOR=1.671;set=HC	GT:AD:AF:DP	0/1:542,94:0.15:636
chr16	33961541	rs79025441	T	G	2544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.151;ClippingRankSum=0.000;DB;DP=650;ExcessHet=3.0103;FS=8.173;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-24.896;QD=3.92;ReadPosRankSum=-2.996;SOR=1.612;set=HC	GT:AD:AF:DP	0/1:553,96:0.15:649
chr16	33961544	rs79909802	C	T	2721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.541;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=11.891;MLEAC=1;MLEAF=0.500;MQ=57.79;MQRankSum=-25.087;QD=4.09;ReadPosRankSum=-2.935;SOR=1.768;set=HC	GT:AD:AF:DP	0/1:565,101:0.15:666
chr16	33961552	rs76049930	G	A	4160.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.151;ClippingRankSum=0.000;DB;DP=791;ExcessHet=3.0103;FS=14.435;MLEAC=1;MLEAF=0.500;MQ=57.65;MQRankSum=-23.272;QD=5.27;ReadPosRankSum=-3.865;SOR=1.871;set=HC	GT:AD:AF:DP	0/1:653,137:0.17:790
chr16	33961555	rs77111738	CA	AG	5871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=13.033;ClippingRankSum=0.000;DB;DP=815;ExcessHet=3.0103;FS=16.102;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-22.603;QD=7.21;ReadPosRankSum=-4.603;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:663,151:0.19:814
chr16	33961563	rs112604583	C	G	7802.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.863;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=5.960;MLEAC=1;MLEAF=0.500;MQ=57.52;MQRankSum=-22.917;QD=8.35;ReadPosRankSum=-8.701;SOR=1.102;set=HC	GT:AD:AF:DP	0/1:702,233:0.25:935
chr16	33961580	rs80277405	C	A	9964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.642;ClippingRankSum=0.000;DB;DP=1157;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-22.848;QD=8.69;ReadPosRankSum=-7.342;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:799,348:0.30:1147
chr16	33961607	rs77756910	G	T	14331.77	.	AC=1;AF=0.500;AN=2;DB;DP=1296;set=Intersection	GT:AD:AF:DP	0/1:880,415:0.32:1295
chr16	33961628	rs72797455	A	G	14991.73	.	AC=1;AF=0.500;AN=2;DB;DP=1252;set=Intersection	GT:AD:AF:DP	0/1:739,429:0.37:1168
chr16	33961658	rs78363140	AG	GA	17161.77	.	AC=1;AF=0.500;AN=2;DB;DP=1080;JOINED;set=Intersection	GT:AD:AF:DP	0/1:624,455:0.42:1079
chr16	33961671	.	C	A	13337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564;ClippingRankSum=0.000;DP=1014;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.59;MQRankSum=-20.837;QD=13.17;ReadPosRankSum=2.103;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:654,359:0.35:1013
chr16	33961671	.	CT	AG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=2;HapScore=1;MGOF=61;MMLQ=23;MQ=49.64;NF=161;NR=194;PP=2944;QD=20;SC=GGCCGTCCGGCTTCCTAGGCG;SbPval=0.56;Source=Platypus;TC=1064;TCF=484;TCR=580;TR=355;WE=33961680;WS=33961647;set=Platypus	GT:AD:AF:DP	0/1:709,355:0.33:1064
chr16	33961672	rs72797457	T	G	13536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=1011;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.58;MQRankSum=-25.463;QD=14.51;ReadPosRankSum=1.240;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:574,359:0.38:933
chr16	33961676	rs201135753	T	C	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=988;ExcessHet=3.0103;FS=1.066;MLEAC=1;MLEAF=0.500;MQ=55.62;MQRankSum=-12.166;QD=0.42;ReadPosRankSum=-2.107;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:911,76:0.08:987
chr16	33961689	rs75866886	GC	AG	11431.77	.	AC=1;AF=0.500;AN=2;DB;DP=878;JOINED;set=Intersection	GT:AD:AF:DP	0/1:571,306:0.35:877
chr16	33961702	rs79080425	C	A	9743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=732;ExcessHet=3.0103;FS=0.562;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-18.463;QD=13.33;ReadPosRankSum=-5.275;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:481,250:0.34:731
chr16	33961705	rs72797458	A	G	10799.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=699;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.21;MQRankSum=-22.661;QD=15.47;ReadPosRankSum=-7.458;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:416,282:0.40:698
chr16	33961748	.	C	T	1368.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.245;ClippingRankSum=0.000;DP=341;ExcessHet=3.0103;FS=51.557;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-15.085;QD=4.01;ReadPosRankSum=-1.561;SOR=3.562;set=HC	GT:AD:AF:DP	0/1:281,60:0.18:341
chr16	33961752	rs77324679	TT	CG	2121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=33.389;JOINED;MLEAC=1;MLEAF=0.500;MQ=56.25;MQRankSum=-17.075;QD=7.14;ReadPosRankSum=0.293;SOR=2.629;set=HC	GT:AD:AF:DP	0/1:234,63:0.21:297
chr16	33961759	.	G	C	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.589;ClippingRankSum=0.000;DP=270;ExcessHet=3.0103;FS=32.384;MLEAC=1;MLEAF=0.500;MQ=56.46;MQRankSum=-13.589;QD=3.57;ReadPosRankSum=-0.324;SOR=3.147;set=HC	GT:AD:AF:DP	0/1:230,40:0.15:270
chr16	33961768	rs115947274	T	C	1112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.535;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=41.174;MLEAC=1;MLEAF=0.500;MQ=56.29;MQRankSum=-14.784;QD=5.04;ReadPosRankSum=-0.330;SOR=4.301;set=HC	GT:AD:AF:DP	0/1:182,39:0.18:221
chr16	33961779	rs74332681	C	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=9.109;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-3.914;QD=0.45;ReadPosRankSum=2.861;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:164,15:0.08:179
chr16	33961787	rs201829623	G	C	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=22.768;MLEAC=1;MLEAF=0.500;MQ=55.72;MQRankSum=-9.631;QD=3.40;ReadPosRankSum=-0.928;SOR=3.451;set=HC	GT:AD:AF:DP	0/1:135,25:0.16:160
chr16	33961794	rs78260690	C	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.562;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=23.565;MLEAC=1;MLEAF=0.500;MQ=55.88;MQRankSum=-9.286;QD=3.38;ReadPosRankSum=-0.642;SOR=3.532;set=HC	GT:AD:AF:DP	0/1:126,22:0.15:148
chr16	33961810	rs78551646	T	C	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=14.532;MLEAC=1;MLEAF=0.500;MQ=55.96;MQRankSum=-7.734;QD=3.01;ReadPosRankSum=-0.079;SOR=2.822;set=HC	GT:AD:AF:DP	0/1:99,15:0.13:114
chr16	33961846	.	C	G	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=5.786;MLEAC=1;MLEAF=0.500;MQ=56.55;MQRankSum=-6.542;QD=2.53;ReadPosRankSum=0.676;SOR=1.761;set=HC	GT:AD:AF:DP	0/1:59,9:0.13:68
chr16	33961852	.	G	T	159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.302;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=5.944;MLEAC=1;MLEAF=0.500;MQ=57.12;MQRankSum=-7.234;QD=2.25;ReadPosRankSum=1.152;SOR=1.998;set=HC	GT:AD:AF:DP	0/1:62,9:0.13:71
chr16	33961855	rs72797460	T	G	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:62,9:0.13:71
chr16	33961869	.	G	A	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.441;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=4.014;MLEAC=1;MLEAF=0.500;MQ=58.32;MQRankSum=-7.535;QD=0.90;ReadPosRankSum=2.416;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:65,6:0.08:71
chr16	33962365	.	C	T	589	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=3;HapScore=2;MGOF=65;MMLQ=23;MQ=54.07;NF=0;NR=7;PP=589;QD=89.110173221;SC=GGTTCGCCGCCCCACCACCCC;SbPval=1.0;Source=Platypus;TC=27;TCF=5;TCR=22;TR=7;WE=33962373;WS=33962341;set=Platypus	GT:AD:AF:DP	0/1:20,7:0.26:27
chr16	33965407	rs140145020	T	C	1055.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.452;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=4.417;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-0.244;QD=12.28;ReadPosRankSum=0.935;SOR=1.556;set=HC	GT:AD:AF:DP	0/1:55,31:0.36:86
chr16	33965408	rs146483430	G	A	657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=6.158;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-0.227;QD=7.47;ReadPosRankSum=0.974;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:56,32:0.36:88
chr16	33965436	.	G	C	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.097;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=11.490;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-7.257;QD=0.50;ReadPosRankSum=-1.397;SOR=3.123;set=HC	GT:AD:AF:DP	0/1:142,12:0.08:154
chr16	33965443	.	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DP=178;ExcessHet=3.0103;FS=13.541;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-9.175;QD=1.25;ReadPosRankSum=-1.829;SOR=2.609;set=HC	GT:AD:AF:DP	0/1:161,17:0.10:178
chr16	33965445	.	C	T	305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=15.646;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-9.549;QD=1.64;ReadPosRankSum=-1.668;SOR=2.765;set=HC	GT:AD:AF:DP	0/1:168,18:0.10:186
chr16	33965456	rs79575365	T	C	4363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.577;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=6.994;MLEAC=1;MLEAF=0.500;MQ=57.86;MQRankSum=-6.953;QD=19.14;ReadPosRankSum=-1.146;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:120,108:0.47:228
chr16	33965459	rs112675472	C	T	787.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.280;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=6.873;MLEAC=1;MLEAF=0.500;MQ=57.90;MQRankSum=-12.120;QD=3.30;ReadPosRankSum=0.927;SOR=1.381;set=HC	GT:AD:AF:DP	0/1:210,29:0.12:239
chr16	33965460	rs112558134	G	A	3366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=1.179;QD=13.15;ReadPosRankSum=-1.747;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:164,92:0.36:256
chr16	33965474	.	C	G	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.914;ClippingRankSum=0.000;DP=341;ExcessHet=3.0103;FS=0.633;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-13.735;QD=2.68;ReadPosRankSum=-1.350;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:298,43:0.13:341
chr16	33965482	rs370138825	GA	G	4458.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.618;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=8.541;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=1.465;QD=11.35;ReadPosRankSum=0.857;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:271,122:0.31:393
chr16	33965484	.	G	T	1047.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.426;ClippingRankSum=0.000;DP=397;ExcessHet=3.0103;FS=3.459;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-15.306;QD=2.64;ReadPosRankSum=-1.354;SOR=0.959;set=HC	GT:AD:AF:DP	0/1:342,55:0.14:397
chr16	33965489	.	A	T	4896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.951;ClippingRankSum=0.000;DP=429;ExcessHet=3.0103;FS=6.925;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=2.221;QD=11.41;ReadPosRankSum=0.816;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:296,133:0.31:429
chr16	33965493	.	T	C	5603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.381;ClippingRankSum=0.000;DP=453;ExcessHet=3.0103;FS=6.828;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=2.382;QD=12.37;ReadPosRankSum=0.019;SOR=1.163;set=HC	GT:AD:AF:DP	0/1:308,145:0.32:453
chr16	33965496	.	A	T	5715.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.619;ClippingRankSum=0.000;DP=480;ExcessHet=3.0103;FS=8.030;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=2.380;QD=11.91;ReadPosRankSum=-0.209;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:324,156:0.33:480
chr16	33965505	rs375920374	C	T	5989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DB;DP=538;ExcessHet=3.0103;FS=6.631;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=3.068;QD=11.13;ReadPosRankSum=-0.338;SOR=1.132;set=HC	GT:AD:AF:DP	0/1:359,179:0.33:538
chr16	33965507	rs74614199	G	C	2281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.719;ClippingRankSum=0.000;DB;DP=549;ExcessHet=3.0103;FS=2.625;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-19.086;QD=4.16;ReadPosRankSum=-1.176;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:462,87:0.16:549
chr16	33965518	.	G	C	2622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DP=639;ExcessHet=3.0103;FS=2.563;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-18.606;QD=4.10;ReadPosRankSum=0.123;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:539,100:0.16:639
chr16	33965520	.	C	T	2688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DP=656;ExcessHet=3.0103;FS=1.622;MLEAC=1;MLEAF=0.500;MQ=58.17;MQRankSum=-18.099;QD=4.10;ReadPosRankSum=0.256;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:553,103:0.16:656
chr16	33965529	rs437324	C	T	2984.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;ClippingRankSum=0.000;DB;DP=711;ExcessHet=3.0103;FS=2.471;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-16.495;QD=4.20;ReadPosRankSum=-0.475;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:589,122:0.17:711
chr16	33965533	rs78817399	A	C	15148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DB;DP=739;ExcessHet=3.0103;FS=5.024;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-12.103;QD=20.50;ReadPosRankSum=-0.090;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:355,384:0.52:739
chr16	33965537	.	C	T	4498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DP=757;ExcessHet=3.0103;FS=3.400;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-17.090;QD=5.94;ReadPosRankSum=-0.331;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:617,140:0.18:757
chr16	33965538	rs146300192	A	G	16389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.887;ClippingRankSum=0.000;DB;DP=769;ExcessHet=3.0103;FS=4.115;MLEAC=1;MLEAF=0.500;MQ=58.41;MQRankSum=-12.014;QD=21.31;ReadPosRankSum=0.291;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:368,401:0.52:769
chr16	33965542	.	C	T	9106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.321;ClippingRankSum=0.000;DP=787;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=1.065;QD=11.59;ReadPosRankSum=1.698;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:529,257:0.33:786
chr16	33965560	rs75603223	T	A	19808.77	.	AC=1;AF=0.500;AN=2;DB;DP=865;set=Intersection	GT:AD:AF:DP	0/1:372,491:0.57:863
chr16	33965563	.	C	T	5569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;ClippingRankSum=0.000;DP=874;ExcessHet=3.0103;FS=2.193;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-14.625;QD=6.39;ReadPosRankSum=-0.487;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:682,189:0.22:871
chr16	33965582	rs199951204	C	T	10791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.392;ClippingRankSum=0.000;DB;DP=919;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=2.047;QD=11.81;ReadPosRankSum=1.537;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:603,311:0.34:914
chr16	33965589	rs62030476	G	A	17054.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;ClippingRankSum=0.000;DB;DP=908;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-9.369;QD=18.87;ReadPosRankSum=2.166;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:374,530:0.59:904
chr16	33965627	.	T	A	6334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DP=732;ExcessHet=3.0103;FS=1.999;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-10.318;QD=8.71;ReadPosRankSum=1.220;SOR=0.528;set=HC	GT:AD:AF:DP	0/1:529,198:0.27:727
chr16	33965636	.	G	A	6197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607;ClippingRankSum=0.000;DP=669;ExcessHet=3.0103;FS=1.974;MLEAC=1;MLEAF=0.500;MQ=59.65;MQRankSum=-8.583;QD=9.35;ReadPosRankSum=0.875;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:480,183:0.28:663
chr16	33965644	rs72799208	A	G	13987.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=611;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-3.437;QD=23.24;ReadPosRankSum=0.505;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:243,359:0.60:602
chr16	33965646	.	G	A	5870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DP=594;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-5.776;QD=10.00;ReadPosRankSum=0.511;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:420,167:0.28:587
chr16	33965655	rs113687113	C	T	6279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.062;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=-2.618;QD=16.75;ReadPosRankSum=-0.404;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:216,159:0.42:375
chr16	33965666	.	G	A	5105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.892;ClippingRankSum=0.000;DP=466;ExcessHet=3.0103;FS=8.251;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.15;ReadPosRankSum=-1.002;SOR=1.272;set=HC	GT:AD:AF:DP	0/1:317,141:0.31:458
chr16	33965669	.	C	G	4985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;ClippingRankSum=0.000;DP=447;ExcessHet=3.0103;FS=7.033;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-1.547;SOR=1.254;set=HC	GT:AD:AF:DP	0/1:302,137:0.31:439
chr16	33965672	.	C	T	4087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.703;ClippingRankSum=0.000;DP=436;ExcessHet=3.0103;FS=7.114;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-0.579;SOR=0.372;set=HC	GT:AD:AF:DP	0/1:297,131:0.31:428
chr16	33965681	.	G	GA	4266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.117;ClippingRankSum=0.000;DP=381;ExcessHet=3.0103;FS=16.080;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-1.974;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:259,114:0.31:373
chr16	33965684	.	C	T	3811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DP=360;ExcessHet=3.0103;FS=7.001;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=10.80;ReadPosRankSum=0.159;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:244,109:0.31:353
chr16	33965688	.	G	C	3511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DP=330;ExcessHet=3.0103;FS=5.460;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=10.87;ReadPosRankSum=0.473;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:223,100:0.31:323
chr16	33965690	rs74964080	C	T	3235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.899;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=15.456;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-1.075;SOR=1.505;set=HC	GT:AD:AF:DP	0/1:227,93:0.29:320
chr16	33965696	.	C	T	320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DP=282;ExcessHet=3.0103;FS=6.170;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.430;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:236,39:0.14:275
chr16	33965708	.	G	A	1760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.334;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=20.604;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=7.59;ReadPosRankSum=1.984;SOR=2.269;set=HC	GT:AD:AF:DP	0/1:181,51:0.22:232
chr16	33965711	rs76711006	G	A	5285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DB;DP=233;ExcessHet=3.0103;FS=3.698;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=23.18;ReadPosRankSum=1.036;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:95,133:0.58:228
chr16	33965727	.	C	T	1262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.619;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=3.242;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=7.65;ReadPosRankSum=0.958;SOR=1.083;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr16	33965731	.	C	T	1269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.301;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.190;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:113,39:0.26:152
chr16	33965735	.	C	T	1248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.516;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=8.55;ReadPosRankSum=-0.120;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:108,38:0.26:146
chr16	33965741	rs111610856	C	T	2285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.945;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=17.86;ReadPosRankSum=0.053;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:56,72:0.56:128
chr16	34318731	rs6563853	T	G	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	34681938	rs237988	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	34682019	rs237989	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	34682193	rs62057608	C	T	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:47,81:0.63:128
chr16	46565019	rs1436436	T	G	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	46602819	rs12934443	C	T	3587.77	.	AC=1;AF=0.500;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	0/1:497,214:0.30:711
chr16	46637746	rs4967259	T	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	46642456	rs8052092	A	G	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	46651417	rs34949348	TA	T	839.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	46655210	rs6598679	A	G	7714.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr16	46694732	rs33973421	C	CA	119.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.55;ReadPosRankSum=1.947;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr16	46696284	rs168745	G	A	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	46697098	rs2304492	A	G	2594.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	46705502	rs36310	T	C	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	46708574	.	TA	T	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.613;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr16	46714512	rs112594824	T	C	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:25,43:0.63:68
chr16	46714529	rs700582	A	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	46715191	rs700581	G	A	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	46723598	rs33994299	T	C	1876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.803;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=1.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=0.520;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:293,115:0.28:408
chr16	46743355	rs11420228	G	GA	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.292;QD=3.65;ReadPosRankSum=0.647;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chr16	46743675	rs4141491	G	A	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	46755213	rs194055	C	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	46764482	rs36460	A	C	3732.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	46773752	rs28185	G	T	374.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	46773999	rs28407821	C	A	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	46858579	.	C	CT	20	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=0.9998;HP=18;HapScore=2;MGOF=10;MMLQ=25;MQ=60.0;NF=1;NR=1;PP=20;QD=11.5;SC=TATTCACATTCTTTTTTTTTT;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=46858587;WS=46858569;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr16	47001847	rs112975508	G	A	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.74;ReadPosRankSum=-0.880;SOR=0.459;set=HC	GT:AD:AF:DP	0/1:50,37:0.43:87
chr16	47005573	rs71134521	T	TAAAAAAAA	222.82	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=55.70;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	47347780	rs2058769	G	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:99,42:0.30:141
chr16	47399670	rs76973321	CT	C	194.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.518;QD=4.43;ReadPosRankSum=-1.768;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:22,22:0.50:44
chr16	47462851	rs17811434	A	G	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr16	47549597	rs78297758	G	A	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:12,18:0.60:30
chr16	47684686	rs150516784	TATTA	T	754.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr16	48122379	.	G	T	461.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr16	48122582	rs7193955	G	A	5547.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	48164777	rs12149826	T	C	6426.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	48201432	rs16945916	T	C	11298.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr16	48201678	rs41280941	C	A	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	48201702	.	GA	AT	1439.77	.	AC=2;AF=1.00;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.63;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	48201707	rs16945917	A	G	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	48204078	rs61739606	T	A	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr16	48209046	rs62058525	C	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	48212720	.	C	T	1174.77	.	AC=1;AF=0.500;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	0/1:26,49:0.65:75
chr16	48227862	rs11866251	G	A	4692.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	48242379	rs17822471	G	A	2564.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.89;ReadPosRankSum=0.094;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:230,142:0.38:372
chr16	48247523	rs11866529	T	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr16	48248732	rs41282047	G	C	909.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.958;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.78;ReadPosRankSum=0.949;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr16	48248738	rs17744321	G	A	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.030;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.86;ReadPosRankSum=-0.009;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:74,29:0.28:103
chr16	48248918	rs8047091	T	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:97,40:0.29:137
chr16	48248949	rs200308896	T	TA	453.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.916;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:82,33:0.29:115
chr16	48278242	rs111517081	C	T	1812.73	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:201,96:0.32:297
chr16	48292513	rs16946038	A	G	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:80,54:0.40:134
chr16	48329918	rs5816590	TC	T	1285.73	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:71,50:0.41:121
chr16	48333535	rs34505973	A	G	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:59,30:0.34:89
chr16	48390512	rs8053839	G	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.478;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.000;QD=16.28;ReadPosRankSum=0.751;SOR=0.155;set=HC	GT:AD:AF:DP	0/1:12,33:0.73:45
chr16	48419291	.	GGCC	G	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=-0.591;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:41,9:0.18:50
chr16	48579938	rs57931869	C	CA	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.413;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-0.337;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr16	49412531	rs27813	A	G	3780.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:104,175:0.63:279
chr16	49412608	rs27783	G	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:43,67:0.61:110
chr16	49557482	rs2287314	C	T	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:199,91:0.31:290
chr16	49670390	rs3803667	A	G	4617.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:510,258:0.34:768
chr16	49671685	rs201588114	C	T	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=649;set=Intersection	GT:AD:AF:DP	0/1:426,221:0.34:647
chr16	49672520	rs3803665	A	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:237,107:0.31:344
chr16	50059279	rs9934704	C	A	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	50059314	rs9924833	A	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	50059500	rs7194313	C	T	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	50067905	rs9302745	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	50069312	rs2041918	C	G	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	50100253	rs4389139	T	A	15533.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr16	50102618	rs60730387	G	GAAAT	5207.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr16	50106594	rs2287197	T	C	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	50109478	rs12931497	G	A	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr16	50112971	rs66756058	GT	G	196.27	.	AC=1;AF=0.500;AN=2;DB;DP=19;MQ=60.57;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr16	50117828	rs5816672	CT	C	2070.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.500;QD=11.19;ReadPosRankSum=0.873;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:27,158:0.85:185
chr16	50118245	rs877639	G	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	50120122	rs2287196	C	T	254.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	50128872	rs10852606	T	C	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	50251590	rs3887556	G	A	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=25.72;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	50251671	.	G	GTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTC	829.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=30;set=Intersection	GT:AF:DP	1/1:1.00:23
chr16	50261735	rs4624170	C	T	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	50263152	rs12932594	A	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.42;ReadPosRankSum=1.292;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:162,69:0.30:231
chr16	50326661	rs8051594	A	G	16867.77	.	AC=2;AF=1.00;AN=2;DB;DP=653;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr16	50327439	rs2302712	A	G	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:122,50:0.29:172
chr16	50327456	rs2302713	C	T	1086.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=3.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.49;ReadPosRankSum=-0.890;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:93,35:0.27:128
chr16	50327462	rs2302714	G	A	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.608;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=4.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.92;ReadPosRankSum=-2.287;SOR=1.150;set=HC	GT:AD:AF:DP	0/1:77,32:0.29:109
chr16	50328421	rs2302716	T	C	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr16	50328526	rs2302717	C	T	2745.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:41,117:0.74:158
chr16	50334840	rs3833062	AG	A	1578.73	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:105,60:0.36:165
chr16	50335150	rs35262781	TG	T	711.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,35:0.33:107
chr16	50338723	rs9924714	C	T	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:150,70:0.32:220
chr16	50339289	rs12444679	C	T	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:145,79:0.35:224
chr16	50342847	rs2302681	C	G	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr16	50345710	rs56388837	GCC	G	195.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DB;DP=49;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=15.06;ReadPosRankSum=1.940;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	50345778	rs2302679	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,12:0.39:31
chr16	50346114	rs67323835	AGGGGCT	A	3865.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.843;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=7.055;QD=9.81;ReadPosRankSum=-1.481;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:277,117:0.30:394
chr16	50346748	rs3214383	T	TCC	687.73	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr16	50348813	rs3841348	AGTT	A	109.73	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chr16	50355996	rs7184802	G	A	119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=0.729;SOR=1.194;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr16	50359901	rs8046783	G	A	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.309;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-0.900;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:31,15:0.33:46
chr16	50367633	rs56370009	T	TA	210.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	50368663	rs1062348	G	A	2097.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:76,100:0.57:176
chr16	50402569	rs113637419	C	T	82.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.684;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.271;SOR=2.115;set=HC	GT:AD:AF:DP	0/1:17,6:0.26:23
chr16	50642201	rs933566	G	C	4847.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:165,226:0.58:391
chr16	50655733	.	T	C	272.77	.	AC=1;AF=0.500;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr16	50731096	rs5743266	G	A	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr16	50733374	rs2076753	G	T	155.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chr16	50733969	rs2111235	A	G	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,13:0.39:33
chr16	50744624	rs2066842	C	T	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:176,101:0.36:277
chr16	50745199	rs2066843	C	T	4440.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:397,233:0.37:630
chr16	50756774	rs5743289	C	T	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chr16	50776462	.	C	G	769.77	.	AC=2;AF=1.00;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	1/1:1,33:0.97:34
chr16	50827601	rs2302759	A	G	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:130,51:0.28:181
chr16	51171175	rs4614723	C	T	9689.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr16	51173559	rs1965024	G	A	6401.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:150,276:0.65:426
chr16	51177113	rs4399530	A	C	1523.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	51177327	rs34204387	G	GAA,GAAA	6083.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.013;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.930;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.188;QD=27.40;ReadPosRankSum=1.249;SOR=0.181;set=HC	GT:AD:AF:DP	1/2:2,151,69:0.68,0.31:222
chr16	52085593	rs1582317	A	G	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	52107849	rs33338	C	A	4159.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	52473263	rs9925256	A	G	996.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:105,52:0.33:157
chr16	52502318	rs2287144	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:116,56:0.33:172
chr16	52502571	rs9928698	A	C	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:44,22:0.33:66
chr16	52837310	rs4784258	C	T	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,14:0.58:24
chr16	52837322	rs4784259	A	C	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr16	52992947	rs9933492	T	C	7614.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	52993016	rs9931362	A	C	10218.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	53035592	rs12149531	A	G	183.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr16	53037529	rs6499205	T	C	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.66;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	53076131	rs62049054	T	C	1637.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:169,92:0.35:261
chr16	53262964	rs35198193	C	T	2753.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:72,128:0.64:200
chr16	53265391	rs36062587	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr16	53319390	rs112281896	T	TAATGA	504.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	53319504	rs202247441	A	T	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:64,25:0.28:89
chr16	53321734	rs3815548	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr16	53340080	rs3760010	G	A	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr16	53341748	rs6499548	T	G	4111.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:110,189:0.63:299
chr16	53469463	rs72801813	A	C	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr16	53501195	rs28439004	A	G	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr16	53635933	rs4784319	A	T	764.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:30,38:0.56:68
chr16	53656135	rs111775292	G	C	324.89	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=-0.902;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr16	53672355	rs7203525	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:24,47:0.66:71
chr16	53699003	rs4133017	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr16	53738283	rs4783818	A	T	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr16	53913930	rs11076004	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr16	53968145	rs111391356	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:7,15:0.68:22
chr16	54018921	rs16952730	G	A	1737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.157;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.85;ReadPosRankSum=1.044;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:196,101:0.34:297
chr16	54273823	rs16953238	G	T	1940.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=0.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.683;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:212,112:0.35:324
chr16	54274354	rs16953243	A	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr16	54279662	rs16953253	C	T	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:24,18:0.43:42
chr16	54280705	rs2302804	G	T	622.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr16	54318102	rs8050831	C	T	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	54318528	rs1450355	A	G	2048.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	54319571	rs1868692	A	G	5122.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	54319994	rs1868691	G	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	54602769	rs112946517	G	GGGAGAA	2451.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=1.698;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=0.215;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:44,55:0.56:99
chr16	54967096	rs13336114	C	A	1485.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:110,78:0.41:188
chr16	55359126	rs31078	A	T	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.457;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:100,35:0.26:135
chr16	55359141	rs31079	T	C	618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.712;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.55;ReadPosRankSum=-2.210;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:97,39:0.29:136
chr16	55360208	rs31081	G	T	724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.427;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=0.765;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:49,42:0.46:91
chr16	55513623	rs243862	C	T	2863.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:217,152:0.41:369
chr16	55515593	rs1030870	G	A	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:58,26:0.31:84
chr16	55515621	rs1030869	T	C	792.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:86,44:0.34:130
chr16	55516708	rs857403	T	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	55516767	rs1030868	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chr16	55519136	rs17859885	C	A	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:212,126:0.37:338
chr16	55519535	rs1132896	G	C	790.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.461;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:164,54:0.25:218
chr16	55523705	rs243849	T	C	8254.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr16	55525913	rs243846	G	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	55527026	rs11640428	A	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.589;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-2.284;SOR=0.325;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr16	55527113	rs2287074	G	A	1228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-0.971;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:176,82:0.32:258
chr16	55527298	rs243843	G	A	1712.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	55530762	rs171498	G	T	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.52;ReadPosRankSum=0.302;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr16	55530772	rs243838	T	G	1536.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.93;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	55532458	rs2287076	T	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.798;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.645;SOR=0.139;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr16	55536622	rs243835	C	T	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:22,40:0.65:62
chr16	55536687	rs243834	A	G	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:54,85:0.61:139
chr16	55536727	rs14070	C	T	911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.264;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:109,54:0.33:163
chr16	55539191	rs243832	C	G	2117.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:47,96:0.67:143
chr16	55543073	rs17302903	G	C	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.359;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.762;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.82;ReadPosRankSum=1.024;SOR=0.775;set=HC	GT:AD:AF:DP	0/1:98,33:0.25:131
chr16	55543322	rs2241147	G	T	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,51:0.50:101
chr16	55562257	rs837549	G	A	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	55562466	rs837550	G	A	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:323,155:0.32:478
chr16	55562572	rs71393085	T	C	1847.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr16	55579899	rs2397722	G	A	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	55583149	rs2160277	T	A	871.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	55583448	rs9934904	A	T	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr16	55601388	rs1502003	A	G	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:84,151:0.64:235
chr16	55612918	rs4784549	T	A	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr16	55617127	rs12934747	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chr16	55728081	rs28613651	T	G	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	55729124	rs2279805	T	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:89,33:0.27:122
chr16	55729969	.	G	A	334.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr16	55730124	rs5568	A	C	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:91,63:0.41:154
chr16	55731835	rs5569	G	A	2289.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:57,103:0.64:160
chr16	55731946	rs998424	G	A	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:76,146:0.66:222
chr16	55735912	rs2242447	C	T	7204.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr16	55806311	rs28538364	G	T	7858.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	55806409	rs28366434	T	C	8612.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr16	55806532	rs143032941	C	CAATACCT	10115.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr16	55807252	rs62030211	G	T	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.13;QD=43.21;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	55807256	rs60044394	A	G	1209.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.13;QD=43.21;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	55807448	rs149224370	C	T	304.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=38.10;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr16	55807461	rs28444662	C	A	271.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=45.30;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	55813552	rs28666799	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr16	55813600	rs28538101	T	C	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	55813644	rs28418425	C	T	2994.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.11;QD=26.74;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	55813712	rs28613114	G	T	1843.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	55813750	rs28594163	G	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	55844609	rs2244613	G	T	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.97;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	55844617	rs2244614	G	A	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=1.253;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	55844926	rs112236246	A	AC	1534.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=-0.321;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:36,99:0.73:135
chr16	55845084	.	T	TG	2481.73	.	AC=2;AF=1.00;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	55845122	rs146150314	C	CA	711.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=2.722;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.36;ReadPosRankSum=0.067;SOR=0.188;set=HC	GT:AD:AF:DP	1/1:3,38:0.93:41
chr16	55847045	rs3859092	A	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.25;SOR=3.076;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	55847051	rs3859093	C	T	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.22;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	55850708	rs2302719	T	G	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	55854196	rs12444825	G	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	55854246	.	G	T	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.60;MQRankSum=-0.674;QD=17.74;ReadPosRankSum=2.029;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	55854259	rs2307237	G	A	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.463;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.36;MQRankSum=-1.533;QD=15.09;ReadPosRankSum=1.547;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:11,9:0.45:20
chr16	55854412	rs2307229	A	T	1666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=6.994;MLEAC=1;MLEAF=0.500;MQ=52.00;MQRankSum=0.947;QD=13.23;ReadPosRankSum=-2.610;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:49,77:0.61:126
chr16	55854452	rs2307233	G	A	2819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=2.637;QD=24.52;ReadPosRankSum=7.241;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:44,71:0.62:115
chr16	55854455	rs2307235	A	C	2825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.636;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=3.942;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=1.982;QD=25.46;ReadPosRankSum=7.081;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:40,71:0.64:111
chr16	55854514	rs8192940	G	A	1217.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	55855150	rs3217164	TG	T	7693.73	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	55857396	rs150951789	A	C	3432.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:113,149:0.57:262
chr16	55862571	rs79647997	A	T	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:155,59:0.28:214
chr16	55862583	rs77360769	G	T	3633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=5.147;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-6.428;QD=12.44;ReadPosRankSum=-3.095;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:193,99:0.34:292
chr16	55862590	rs79821028	G	T	3898.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=3.897;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-6.301;QD=11.67;ReadPosRankSum=-2.782;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:217,117:0.35:334
chr16	55862605	rs3848300	G	A	13094.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr16	55862647	rs62028646	A	G	5157.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:371,267:0.42:638
chr16	55862691	rs62028647	G	A	5750.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:392,296:0.43:688
chr16	55862717	rs76828834	T	C	9102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.212;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.75;MQRankSum=-9.041;QD=16.03;ReadPosRankSum=0.240;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:329,239:0.42:568
chr16	55862720	rs74019278	T	C	9151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.314;ClippingRankSum=0.000;DB;DP=564;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-9.551;QD=16.28;ReadPosRankSum=-1.027;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:317,245:0.44:562
chr16	55862762	rs3826194	C	G	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:266,198:0.43:464
chr16	55862791	rs114632091	T	C	4003.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:288,201:0.41:489
chr16	55862824	rs3826192	C	T	6563.77	.	AC=1;AF=0.500;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	0/1:373,304:0.45:677
chr16	55862836	rs3826191	G	A	7046.77	.	AC=1;AF=0.500;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	0/1:421,334:0.44:755
chr16	55862883	rs3826190	C	A	7541.77	.	AC=1;AF=0.500;AN=2;DB;DP=961;set=Intersection	GT:AD:AF:DP	0/1:553,406:0.42:959
chr16	55862901	rs3826189	T	G	6791.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:565,368:0.39:933
chr16	55862955	.	G	C	5359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.119;ClippingRankSum=0.000;DP=534;ExcessHet=3.0103;FS=10.796;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-17.511;QD=10.07;ReadPosRankSum=-6.087;SOR=1.389;set=HC	GT:AD:AF:DP	0/1:371,161:0.30:532
chr16	55862958	rs3826188	GC	AG	5253.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.635;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=12.670;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-17.774;QD=10.34;ReadPosRankSum=-6.116;SOR=1.567;set=HC	GT:AD:AF:DP	0/1:360,148:0.29:508
chr16	55862961	rs3826187	T	A	5024.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=12.893;MLEAC=1;MLEAF=0.500;MQ=57.99;MQRankSum=-18.147;QD=10.28;ReadPosRankSum=-6.189;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:351,138:0.28:489
chr16	55866894	rs56278207	T	TA	13816.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	55880323	rs11864688	G	A	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr16	55880480	rs11860456	A	C	830.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:82,45:0.35:127
chr16	55880534	rs11860488	G	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:96,56:0.37:152
chr16	55880639	rs11865638	C	T	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:150,73:0.33:223
chr16	55880825	rs11076120	T	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:28,21:0.43:49
chr16	55883618	rs2160276	T	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr16	55883761	rs7186875	A	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	55890398	rs9937572	G	C	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:176,69:0.28:245
chr16	55895249	rs3859104	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:28,7:0.20:35
chr16	55903640	rs145577128	G	A	6678.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:196,319:0.62:515
chr16	55905636	rs3859108	A	G	4851.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	55907600	rs6416763	C	T	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:16,34:0.68:50
chr16	56226638	rs149880726	G	GCA	270.73	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,13:0.31:42
chr16	56227965	rs59779556	T	G	720.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:58,40:0.41:98
chr16	56228066	rs1190761	A	G	3782.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	56362725	rs2241952	T	C	9275.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr16	56368501	rs4784657	C	T	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:45,58:0.56:103
chr16	56368689	rs1065375	C	T	14566.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr16	56377748	rs1799917	A	G	6689.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:232,321:0.58:553
chr16	56396486	rs4924	C	T	6905.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:188,308:0.62:496
chr16	56401294	rs2241957	T	C	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:6,23:0.79:29
chr16	56435765	.	C	T	2694.77	.	AC=1;AF=0.500;AN=2;DP=206;set=Intersection	GT:AD:AF:DP	0/1:80,126:0.61:206
chr16	56436824	rs2440472	A	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:80,140:0.64:220
chr16	56441862	rs2920704	A	G	3880.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:101,187:0.65:288
chr16	56442066	rs4238787	C	T	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr16	56468561	rs8056687	C	T	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chr16	56488565	rs57144787	GA	G	43.73	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr16	56504724	rs13337155	G	C	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr16	56535059	rs73547688	A	G	343.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr16	56535193	rs150693766	C	CA	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.35;ReadPosRankSum=-0.830;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:40,16:0.29:56
chr16	56548501	rs4784677	C	T	6034.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	56599221	rs182221	C	G	2508.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,90:0.99:91
chr16	56601720	rs666636	A	G	6964.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	56601720	.	ATT	GTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=65;NR=69;PP=2947;QD=20;SC=TGTAAAACATATTGGAAGAGT;SbPval=0.53;Source=Platypus;TC=137;TCF=66;TCR=71;TR=134;WE=56601730;WS=56601710;set=Platypus	GT:AD:AF:DP	1/1:3,134:0.98:137
chr16	56601722	rs666647	T	C	6964.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.65;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	56602671	rs762604	C	T	528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.995;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=0.185;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:53,29:0.35:82
chr16	56623191	rs7195310	C	T	1075.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	56624079	rs11644094	A	G	3114.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	56666886	rs1827208	C	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	56667282	rs1827210	C	A	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	56667614	rs2270836	C	T	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	56667854	rs2270837	A	G	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr16	56673227	rs11640851	C	A	11076.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr16	56673249	rs11647171	T	C	13417.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:2,340:0.99:342
chr16	56673436	rs58069153	A	AAG	5964.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr16	56686002	rs2070838	G	C	5726.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.485;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	56686005	rs4619400	T	A	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=1.467;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	56686030	rs964372	C	G	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	56686380	rs2013775	T	C	18420.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,703:1.00:703
chr16	56686471	rs964374	G	T	21486.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,798:1.00:798
chr16	56693261	rs2291957	G	T	2627.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	56702000	rs904770	T	C	8475.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	56709728	rs8046181	G	C	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=2.327;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	56709729	rs8048049	A	G	4066.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.50;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	56718015	rs34700091	AT	A	807.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=1.621;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-1.041;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:64,86:0.57:150
chr16	56855496	rs2118017	C	G	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	56863072	rs73557741	C	T	2128.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:63,98:0.61:161
chr16	56864398	rs1561140	C	T	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:141,74:0.34:215
chr16	56864618	rs4461062	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:31,15:0.33:46
chr16	56868700	rs1347591	A	G	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:55,40:0.42:95
chr16	56873495	rs1138295	C	T	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:88,54:0.38:142
chr16	56899508	rs999662	T	G	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr16	56901065	rs2304479	A	G	3270.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:91,157:0.63:248
chr16	56904587	rs1529927	C	G	9913.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr16	56906626	rs2229209	C	T	3419.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:98,156:0.61:254
chr16	56911932	.	G	GTCCCTCCCTCCCTCTCTCCCTCCC	1166.73	.	AC=2;AF=1.00;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	56913513	rs5801	C	T	12394.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr16	56917953	rs2304483	T	C	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	56919073	rs11076172	G	A	14102.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr16	56921829	rs13306676	C	T	1792.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=1.098;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	56926176	rs12443855	G	A	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	56926828	rs2278489	T	C	4402.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	56928280	rs13306679	G	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr16	56928380	.	A	ACTCACATAG	7064.73	.	AC=1;AF=0.500;AN=2;DP=295;set=Intersection	GT:AD:AF:DP	0/1:118,172:0.59:290
chr16	56933315	rs9922270	T	C	1783.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	56936272	rs34772420	T	C	7622.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	56938387	rs2289115	C	T	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	56966011	rs37025	G	A	10672.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr16	56966071	rs37024	T	G	9567.77	.	AC=1;AF=0.500;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	0/1:226,444:0.66:670
chr16	56994394	rs61631085	GT	G	729.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr16	56994894	rs4783961	G	A	5200.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:147,241:0.62:388
chr16	56995038	rs4783962	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:23,36:0.61:59
chr16	57003723	rs891141	G	T	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	57003977	rs891142	T	C	11428.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.811;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=31.92;ReadPosRankSum=1.820;SOR=1.028;set=HC	GT:AD:AF:DP	1/1:2,356:0.99:358
chr16	57003980	rs891143	T	C	16505.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.60;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,362:1.00:362
chr16	57007446	rs11076176	T	G	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	57015463	rs7195984	G	A	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	57015545	rs1800774	C	T	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:4,230:0.98:234
chr16	57016092	rs5882	G	A	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	57017474	rs289741	G	A	5127.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	57017762	rs289742	C	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	57057619	rs1684575	G	T	9031.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:1,339:1.00:340
chr16	57057654	rs1672865	A	G	10974.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr16	57059241	rs56132500	G	C	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:98,46:0.32:144
chr16	57060724	rs13339199	G	A	5024.77	.	AC=1;AF=0.500;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	0/1:512,272:0.35:784
chr16	57062177	rs1684576	T	A	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=343;ExcessHet=3.0103;FS=0.860;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=0.937;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:116,226:0.66:342
chr16	57065121	rs16965220	C	A	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,9:0.64:14
chr16	57067595	rs58124158	A	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr16	57070004	rs11409789	C	CT	7711.73	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr16	57070165	rs1651668	T	C	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	57071113	rs1684579	TA	CG	7755.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	57071232	rs1684580	C	G	12977.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr16	57071335	rs1651670	G	A	5461.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	57071375	rs1672866	T	C	2700.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	57073683	rs864750	G	C	11460.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr16	57074451	rs289726	T	C	2039.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:38,91:0.71:129
chr16	57075379	rs35622257	G	GT	2097.73	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:58,98:0.63:156
chr16	57075781	rs289727	C	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:40,62:0.61:102
chr16	57076115	rs158482	T	G	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	57080528	rs289723	C	A	5721.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:130,257:0.66:387
chr16	57089130	rs1167512	C	A	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:245,119:0.33:364
chr16	57103579	rs289710	G	A	6294.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	57103854	rs289711	T	C	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr16	57111825	rs27392	T	C	16281.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr16	57113229	rs42221	A	G	4366.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	57114924	rs154045	A	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	57114982	rs154044	C	T	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	57115274	rs154043	T	C	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	57116287	rs27195	A	G	10034.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr16	57116514	rs27194	T	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	57153564	.	TG	T	3063.73	.	AC=1;AF=0.500;AN=2;DP=208;set=Intersection	GT:AD:AF:DP	0/1:120,85:0.41:205
chr16	57153567	.	G	A	3072.77	.	AC=1;AF=0.500;AN=2;DP=200;set=Intersection	GT:AD:AF:DP	0/1:115,85:0.42:200
chr16	57155457	rs4783976	T	C	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	57157206	rs2305696	C	T	4756.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	57159248	rs4784771	C	T	7300.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr16	57159402	rs4784772	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	57171233	rs2305693	C	G	12266.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr16	57197745	rs62037356	G	T	5153.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	57249981	rs11391063	A	AT	3135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;ClippingRankSum=0.000;DB;DP=472;ExcessHet=3.0103;FS=0.918;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.778;QD=7.03;ReadPosRankSum=0.760;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:192,254:0.57:446
chr16	57255363	rs7206038	T	C	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	57261146	rs11643790	A	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	57392733	rs4359426	A	C	8080.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr16	57481305	rs178602	T	C	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.580;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.820;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:90,26:0.22:116
chr16	57486613	rs686402	C	T	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-1.542;SOR=0.501;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr16	57494178	rs223868	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,27:0.31:87
chr16	57495026	rs223870	T	C	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	57496494	rs178601	A	G	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr16	57499841	rs223839	A	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.120;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-0.467;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:107,47:0.31:154
chr16	57499902	rs4937	T	C	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:80,42:0.34:122
chr16	57503213	rs601194	C	T	2952.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:274,160:0.37:434
chr16	57503773	rs223874	G	A	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:90,64:0.42:154
chr16	57507777	rs11458669	T	TC	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=7.617;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.797;SOR=1.734;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr16	57508960	rs477025	T	C	413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=17.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.265;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:185,43:0.19:228
chr16	57509164	rs223877	A	G	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:93,56:0.38:149
chr16	57509572	.	A	ATCTCTCTCTCTC	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=-0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-0.000;QD=20.36;ReadPosRankSum=0.431;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr16	57509697	rs139126350	CCT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.125;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:160,18:0.10:178
chr16	57509956	rs2074545	G	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr16	57562804	rs12935069	G	A	12800.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,509:1.00:509
chr16	57609003	rs370635864	C	T	2674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=-2.168;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:89,133:0.60:222
chr16	57625470	rs11646739	C	T	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	57687314	rs2305307	T	C	2228.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,105:0.66:158
chr16	57689214	.	C	T	703.77	.	AC=1;AF=0.500;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr16	57689230	rs200184349	G	GGT	1093.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr16	57689385	rs1801257	C	G	2630.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:61,116:0.66:177
chr16	57689883	rs1376041	T	C	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	57690606	rs11866912	C	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:98,51:0.34:149
chr16	57691218	rs150232756	C	T	1289.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:114,68:0.37:182
chr16	57691265	rs2305309	C	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:189,120:0.39:309
chr16	57695568	rs17240890	C	T	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr16	57695604	rs2290177	C	T	1076.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:93,52:0.36:145
chr16	57697532	rs10852554	T	G	5212.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	57697568	rs10852555	C	A	1824.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:39,79:0.67:118
chr16	57702473	rs7205731	T	C	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	57708297	rs4784841	T	C	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.77;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	57708483	rs4784842	T	C	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr16	57708642	rs4784003	T	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	57710093	rs12596635	C	G	3104.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	57771126	rs1061546	G	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,70:0.65:108
chr16	57771337	rs58845971	A	G	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chr16	57775537	rs61620199	C	T	6570.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:173,301:0.64:474
chr16	57778488	rs2967152	A	G	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.956;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=1.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=1.460;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:251,76:0.23:327
chr16	57778550	rs2967153	C	G	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	57786517	rs2965797	C	T	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:161,92:0.36:253
chr16	57786711	rs2965798	C	T	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:136,60:0.31:196
chr16	57790920	rs6994	T	C	489.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr16	57794888	rs2965799	A	T	2723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=-0.186;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:391,163:0.29:554
chr16	57795394	rs2967172	G	A	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	0/1:499,238:0.32:737
chr16	57797913	rs11649013	C	T	3627.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:417,201:0.33:618
chr16	57797949	rs58535973	C	T	15486.77	.	AC=1;AF=0.500;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	0/1:349,698:0.67:1047
chr16	57803911	rs3803590	A	G	2296.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:212,125:0.37:337
chr16	57805048	rs2967166	A	G	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr16	57805078	rs2965790	C	T	221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=0.679;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:67,20:0.23:87
chr16	57805176	rs2967165	A	G	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.089;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=2.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.140;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:162,64:0.28:226
chr16	57806030	rs2965789	A	G	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr16	57822440	rs74022043	G	A	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,78:0.68:115
chr16	57822734	rs74022044	C	T	2404.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:63,101:0.62:164
chr16	57837462	rs8043981	C	A	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr16	57850141	rs1477404	C	G	5541.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	57921752	rs11076207	A	G	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	57937856	rs413562	G	C	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	57937895	rs437920	G	A	2140.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr16	57946973	rs434961	A	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:81,51:0.39:132
chr16	57949224	rs10459809	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-0.635;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:104,28:0.21:132
chr16	57949251	rs483053	G	A	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.45;ReadPosRankSum=-3.036;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:100,28:0.22:128
chr16	57949943	rs71387200	A	G	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr16	57950178	rs440565	G	C	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:201,93:0.32:294
chr16	57950270	rs4784871	C	T	380.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:51,20:0.28:71
chr16	57951394	rs3991715	T	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:34,24:0.41:58
chr16	57953010	rs35424571	C	G	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:232,164:0.41:396
chr16	57954268	rs166000	A	G	2259.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=0.162;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:237,128:0.35:365
chr16	57957118	rs71387201	C	T	265.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr16	57957138	rs247065	G	C	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr16	57957216	rs12927214	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:87,36:0.29:123
chr16	57973989	rs2303779	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:236,116:0.33:352
chr16	57974240	rs2303778	G	A	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:244,151:0.38:395
chr16	57984483	rs152143	G	A	2128.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	57991123	rs34759686	GC	G	3225.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	57991317	rs503686	C	T	776.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr16	57992119	rs399634	T	A	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr16	57992229	rs147036428	G	GGGTCCCTTCTTCCTACTGTGCCTTCACACCCCAGGGACACA	9360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.372;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=54.101;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=-1.482;QD=22.94;ReadPosRankSum=-3.499;SOR=3.340;set=HC	GT:AD:AF:DP	0/1:280,128:0.31:408
chr16	57992500	.	C	A	173.77	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:46,13:0.22:59
chr16	57996932	rs17821448	G	A	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865;ClippingRankSum=0.000;DB;DP=408;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.421;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:273,132:0.33:405
chr16	57996960	rs13336595	C	T	1788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.574;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-1.335;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:225,109:0.33:334
chr16	57998345	rs3859043	C	T	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:79,61:0.44:140
chr16	58019065	rs35768173	TG	T	5011.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	58019070	rs2304485	G	C,T	4769.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=117;set=Intersection	GT:AF:DP	1/2:0.75,0.25:117
chr16	58019253	rs2304486	G	C	1206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=1.964;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:246,81:0.25:327
chr16	58019396	rs9934227	G	A	23652.77	.	AC=2;AF=1.00;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	1/1:0,909:1.00:909
chr16	58021395	rs2241771	A	C	10705.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr16	58030401	rs3743555	T	C	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	58030634	rs3743556	C	T	16965.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr16	58035652	rs12599089	A	T	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:1,27:0.96:28
chr16	58036347	rs3743560	G	A	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,290:1.00:291
chr16	58051178	rs4784022	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	58053161	rs3743562	C	T	982.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	58071263	rs28733439	C	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:25,39:0.61:64
chr16	58072153	rs2241774	C	T	1266.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:126,62:0.33:188
chr16	58073924	.	G	A	6766.77	.	AC=1;AF=0.500;AN=2;DP=448;set=Intersection	GT:AD:AF:DP	0/1:146,301:0.67:447
chr16	58076422	rs2118018	A	G	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,16:0.33:48
chr16	58079165	rs3743563	G	A	863.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:66,43:0.39:109
chr16	58200464	rs112507755	ACT	A	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.329;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=0.724;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.419;QD=2.16;ReadPosRankSum=-1.329;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:201,37:0.16:238
chr16	58296542	rs9923694	T	C	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=2.746;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	58296545	rs3815802	G	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=2.880;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	58313566	rs6499945	T	G	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.97;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	58313578	rs71155257	CT	C	1253.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.244;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=0.517;SOR=0.955;set=HC	GT:AD:AF:DP	0/1:12,79:0.87:91
chr16	58318604	rs3815803	T	C	6193.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr16	58318721	rs11313996	AT	A	443.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.946;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.583;QD=11.38;ReadPosRankSum=-1.064;SOR=2.476;set=HC	GT:AD:AF:DP	0/1:6,33:0.85:39
chr16	58320211	rs4784916	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	58327646	rs2288012	A	G	5847.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:2,216:0.99:218
chr16	58428980	rs10707626	AT	A	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.514;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=0.832;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chr16	58429176	.	C	CT	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=1.983;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr16	58499290	rs77505458	C	T	115.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	58528736	rs371388096	T	TAA	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.709;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:72,31:0.30:103
chr16	58533932	rs982697	A	C	61.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:28,6:0.18:34
chr16	58537897	rs2427787	G	A	1211.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:40,52:0.57:92
chr16	58540037	rs72227893	CGT	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.471;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:67,16:0.19:83
chr16	58550284	rs201111578	C	T	1557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=4.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.111;SOR=0.471;set=HC	GT:AD:AF:DP	0/1:251,99:0.28:350
chr16	58551946	rs371156890	T	A	581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=-0.541;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:138,42:0.23:180
chr16	58594340	rs71739184	AT	A	578.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:7,40:0.85:47
chr16	58610257	rs9936144	C	T	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	58614733	rs72790275	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	58616984	rs17854029	T	C	13163.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr16	58620995	rs12443835	A	G	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	58622596	rs34716647	TC	T	3736.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr16	58632954	rs55921701	C	CAAA	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.660;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.79;ReadPosRankSum=-0.551;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr16	58703878	.	C	CA	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.257;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.852;QD=1.00;ReadPosRankSum=-0.243;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:131,35:0.21:166
chr16	58709250	.	GA	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.59;ReadPosRankSum=-0.387;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	59772778	rs28369631	A	G	59.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.13;ReadPosRankSum=-0.665;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr16	64982471	rs60503515	AAAGAG	A	2461.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	64982477	rs57831187	T	C	2470.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	65005395	rs3785315	T	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	65005462	rs12597529	G	A	7412.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	65016087	rs35213	A	C	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	65016285	rs35212	C	A	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	65022234	rs1130821	C	T	6070.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	65025658	rs35196	T	C	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr16	65025849	rs35194	A	G	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	65032846	rs7190608	G	A	1668.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,59:0.98:60
chr16	65397282	rs3913028	A	G	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.08;ReadPosRankSum=1.398;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr16	65397291	rs58616603	T	C	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.47;ReadPosRankSum=0.292;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:42,17:0.29:59
chr16	65839621	rs139083721	CTCT	C	1738.73	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:106,55:0.34:161
chr16	66420885	rs1130844	C	T	7979.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,300:0.99:302
chr16	66424235	rs2304527	T	G	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr16	66432303	rs113303884	GACCACCCC	G	1852.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.043;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.599;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:131,55:0.30:186
chr16	66432423	rs1049970	T	C	12724.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.71;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr16	66432423	.	TC	CC,CT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.22;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=177,58;NR=166,59;PP=2962,1396;QD=20;SC=TTCAAATTCATCTTGAATACT;SbPval=0.52;Source=Platypus;TC=343;TCF=177;TCR=166;TR=343,117;WE=66432432;WS=66432413;set=Platypus	GT:AF:DP	0/1:1.00:343
chr16	66432424	rs3826229	C	T	2390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.034;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=2.220;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:256,135:0.35:391
chr16	66434571	rs6499082	G	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	66436460	rs113672170	G	A	405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.273;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=9.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=-2.494;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:14,18:0.56:32
chr16	66437131	rs1063438	A	T	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	66511627	rs11075636	A	G	2179.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:69,100:0.59:169
chr16	66546029	rs141234377	C	T	492.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr16	66599710	rs2232727	G	A	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	66601057	rs377761335	CT	C	209.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.502;QD=1.18;ReadPosRankSum=0.219;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:135,43:0.24:178
chr16	66646591	rs3743719	C	T	6345.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	66757487	.	G	GT	493.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.118;ClippingRankSum=0.000;DP=232;ExcessHet=3.0103;FS=0.640;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=2.28;ReadPosRankSum=-0.564;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:151,66:0.30:217
chr16	66757728	rs77481802	GA	G	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.890;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=3.304;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.831;QD=3.71;ReadPosRankSum=0.875;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:64,44:0.41:108
chr16	66759682	rs2305311	C	A	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:62,24:0.28:86
chr16	66762847	rs12599882	T	C	472.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr16	66776657	rs4407052	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,29:0.34:85
chr16	66789125	rs11075643	A	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr16	66792714	rs363156	T	C	1335.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:126,74:0.37:200
chr16	66793226	rs363157	T	C	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.079;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:86,36:0.30:122
chr16	66812653	rs363161	T	A	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr16	66812797	rs363162	C	T	3307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.122;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-0.474;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:503,203:0.29:706
chr16	66839540	.	CA	C	90.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=0.642;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	66842794	rs363169	A	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:21,10:0.32:31
chr16	66851224	rs9889170	T	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=1.535;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:57,28:0.33:85
chr16	66861470	rs11372346	C	CA	185.25	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,12:0.55:22
chr16	66861966	rs152164	G	A	1819.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=2.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.631;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:184,105:0.36:289
chr16	66885652	rs151460	A	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:157,63:0.29:220
chr16	66886505	rs369232559	GAAAAGAA	G	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=5.335;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=3.326;QD=1.85;ReadPosRankSum=0.993;SOR=0.191;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr16	66886559	rs152168	G	A	882.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr16	66946894	rs150509525	CGT	C	1519.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=527;ExcessHet=3.0103;FS=4.067;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.897;QD=4.69;ReadPosRankSum=0.341;SOR=0.992;set=HC	GT:AD:AF:DP	0/1:224,100:0.31:324
chr16	66977094	rs2241409	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr16	67116032	rs200780430	GA	G	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=1.721;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:28,15:0.35:43
chr16	67116066	.	A	AT	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.389;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-0.924;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr16	67197776	rs5817616	C	CG	2297.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:4,86:0.96:90
chr16	67198492	rs192479571	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:94,45:0.32:139
chr16	67221050	rs9924876	A	G	2679.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:264,144:0.35:408
chr16	67229793	.	ACAG	A	1149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DP=667;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=3.645;QD=2.32;ReadPosRankSum=0.415;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:430,66:0.13:496
chr16	67233266	rs12923138	A	C	2214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=1.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-2.502;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:319,134:0.30:453
chr16	67264616	.	A	G	3529.77	.	AC=1;AF=0.500;AN=2;DP=241;set=Intersection	GT:AD:AF:DP	0/1:84,156:0.65:240
chr16	67316600	rs7200919	G	A	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	0/1:363,173:0.32:536
chr16	67324957	rs27860	T	C	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	67579766	rs189363699	G	A	3819.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:260,192:0.42:452
chr16	67670472	.	GTA	G	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;ClippingRankSum=0.000;DP=102;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=3.214;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr16	67691515	rs14920	C	A	2160.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:250,126:0.34:376
chr16	67691668	rs6979	A	G	1935.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:195,99:0.34:294
chr16	67697781	rs112756488	A	AC	2940.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.924;QD=6.79;ReadPosRankSum=0.531;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:284,149:0.34:433
chr16	67863451	rs3743733	T	C	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:71,29:0.29:100
chr16	67876823	rs377516180	ACAG	A	1022.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=690;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.003;QD=1.78;ReadPosRankSum=-0.734;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:510,64:0.11:574
chr16	68002521	.	C	T	1870.77	.	AC=1;AF=0.500;AN=2;DP=320;set=Intersection	GT:AD:AF:DP	0/1:225,95:0.30:320
chr16	68025801	rs255051	G	C	7113.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr16	68057096	rs237831	T	C	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:144,75:0.34:219
chr16	68100461	rs2285912	C	T	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.397;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=3.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.127;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:154,58:0.27:212
chr16	68260122	rs74625559	G	A	309.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr16	68287385	rs141030968	TCTC	T	1556.73	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr16	68325665	rs10525504	G	GGTGT,GGTGTGT	2051.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=193;set=Intersection	GT:AF:DP	1/2:0.44,0.45:62
chr16	68336360	rs35736950	A	G	2366.77	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:273,141:0.34:414
chr16	68344696	rs3803650	C	T	11867.77	.	AC=1;AF=0.500;AN=2;DB;DP=840;set=Intersection	GT:AD:AF:DP	0/1:302,538:0.64:840
chr16	68344945	rs3743741	G	C	1841.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:40,78:0.66:118
chr16	68345036	rs3743742	G	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	68356187	rs7203220	A	C	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr16	68356419	rs4783618	A	G	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,13:0.48:27
chr16	68363181	rs1111571	G	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr16	68382447	rs2863975	T	C	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:15,14:0.48:29
chr16	68387373	rs1562479	C	T	2596.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:49,112:0.70:161
chr16	68387496	rs1868159	A	C	2357.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:63,109:0.63:172
chr16	68391189	rs7192234	C	G	3961.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:114,179:0.61:293
chr16	68395094	rs2279539	G	A	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:69,158:0.70:227
chr16	68397530	rs3826167	T	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr16	68397909	rs1465470	A	G	2401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.804;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.76;ReadPosRankSum=-0.687;SOR=0.937;set=HC	GT:AD:AF:DP	0/1:33,64:0.66:97
chr16	68397916	rs1465469	T	G	2321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=1.946;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.69;ReadPosRankSum=-0.233;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:31,56:0.64:87
chr16	68398924	rs1868158	C	T	5939.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:162,277:0.63:439
chr16	68573945	rs1182968	C	T	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	68591156	rs1728784	T	A	3247.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr16	68591230	rs1728785	A	C	5438.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	68591350	rs1645929	A	G	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	68598007	rs1177648	A	G	17894.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr16	68598744	rs34979386	A	ATTT	344.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	68710165	rs3118229	T	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	68712217	rs2296410	T	C	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	68712730	rs8049247	C	A	7865.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:159,353:0.69:512
chr16	68713730	rs2296409	G	A	5063.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:133,234:0.64:367
chr16	68713823	rs2296408	C	A	6533.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:185,293:0.61:478
chr16	68716179	rs1886697	T	C	1643.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:61,76:0.55:137
chr16	68718750	rs2281850	A	G	1916.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:65,89:0.58:154
chr16	68721340	rs2296406	G	A	1466.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr16	68721470	rs2296405	T	C	5839.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:171,276:0.62:447
chr16	68725783	rs2274239	G	A	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr16	68729112	rs8060790	A	G	3276.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:73,153:0.68:226
chr16	68732049	rs3114409	A	C	1709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-1.648;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:244,102:0.29:346
chr16	68771372	rs3743674	C	T	3952.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	68771418	rs147838237	C	CGCCCCAGCCCCGT	1159.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:48,28:0.37:76
chr16	68771424	.	A	AGCCCCGTGCCCCAGCCCTGC	1998.73	.	AC=1;AF=0.500;AN=2;DP=107;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr16	68771547	rs3743675	G	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.91;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	68847576	rs9935130	A	G	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.14;ReadPosRankSum=0.275;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:30,49:0.62:79
chr16	68847584	rs8056633	T	G	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.50;ReadPosRankSum=-0.562;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:25,45:0.64:70
chr16	68857441	rs1801552	T	C	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:58,105:0.64:163
chr16	68863752	rs33965115	G	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr16	68900878	.	CTT	C	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=2.162;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.94;ReadPosRankSum=1.879;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr16	69143481	rs2232227	T	G	6333.77	.	AC=1;AF=0.500;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	0/1:392,315:0.45:707
chr16	69152391	rs117169105	G	T	2881.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:130,139:0.52:269
chr16	69153669	rs118172292	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:21,34:0.62:55
chr16	69166366	.	G	GC	1612.73	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	69176999	rs77985323	A	G	1584.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:83,83:0.50:166
chr16	69196825	rs11640113	A	C	1927.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:59,82:0.58:141
chr16	69200931	rs12931566	A	T	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:171,149:0.47:320
chr16	69221510	rs10650	C	G	9548.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr16	69279475	rs78184213	A	G	2155.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:43,97:0.69:140
chr16	69317807	rs12325242	G	C	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	69334880	rs34703750	C	CA	1777.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:31,112:0.78:143
chr16	69350035	rs3817030	A	C	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	69350069	rs12708896	C	G	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	69354963	rs1127231	A	G	6571.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr16	69356695	rs11075714	A	G	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	69357309	rs9931701	T	C	2087.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	69363734	rs2242414	A	G	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	69364443	rs8057004	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.12;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	69365123	rs9928658	G	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	69372927	rs3759979	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	69373414	rs11542583	T	C	3210.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	69375658	rs8053850	G	A	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	69395141	.	G	GA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.86;ReadPosRankSum=-0.251;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:34,19:0.36:53
chr16	69402252	rs35439397	C	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	69404241	rs12325060	G	A	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	69458779	rs1619397	G	A	6210.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr16	69492973	rs34120910	A	AT	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.30;ReadPosRankSum=-1.302;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:7,35:0.83:42
chr16	69599803	rs8048032	A	G	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	69602249	rs9937747	A	G	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.560;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.216;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=9.08;ReadPosRankSum=3.830;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr16	69602279	.	GTATA	G,GTA	782.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;QD=35.58;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:0,16,6:0.73,0.27:22
chr16	69602296	rs201065189	T	C	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=40.43;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	69678835	rs13329844	G	A	1655.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	69704122	rs72523664	C	CTG	1585.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	69704204	rs3217435	CT	C	289.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	69718972	rs9934681	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	69746835	rs146678062	G	A	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-0.350;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr16	69752464	rs689452	C	G	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chr16	69782855	rs3811348	C	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr16	69783587	.	G	GT	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=-0.310;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chr16	69873992	rs2291959	T	G	2966.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:68,141:0.67:209
chr16	69874198	rs2291960	C	T	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.745;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.04;ReadPosRankSum=-0.086;SOR=1.220;set=HC	GT:AD:AF:DP	0/1:18,24:0.57:42
chr16	69876164	rs9940315	A	G	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:22,27:0.55:49
chr16	69942527	rs118165329	G	A	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;MQ=60.08;set=Intersection	GT:AD:AF:DP	0/1:86,43:0.33:129
chr16	69942608	rs5817677	AG	A	9409.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr16	69959223	rs2270838	G	A	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr16	69963355	rs1566452	G	A	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	69965024	rs2270840	A	T	8011.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr16	69965281	rs8052727	T	G	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	69965592	rs2291961	A	G	4502.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr16	69967093	rs2102066	G	A	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	69967732	rs8047818	G	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr16	69967897	rs2270841	T	C	7472.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr16	69970000	rs2270842	T	G	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	69970329	rs1983016	A	G	8135.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr16	69973622	rs10712484	GC	G	9186.73	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	69973655	rs4985461	C	G	10901.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr16	69973825	rs3748389	G	A	18516.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr16	69988373	rs2549097	T	C	7766.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr16	69988472	rs75776403	C	T	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:8,117:0.94:125
chr16	70099535	rs889378	A	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	70099593	rs889377	T	C	137.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.28;QD=22.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	70154480	rs200469748	A	G	1139.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:288,94:0.25:382
chr16	70161263	rs2549532	T	C	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.931;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=11.100;MLEAC=1;MLEAF=0.500;MQ=55.11;MQRankSum=-12.563;QD=0.91;ReadPosRankSum=-0.776;SOR=1.733;set=HC	GT:AD:AF:DP	0/1:378,52:0.12:430
chr16	70163691	rs4985506	C	T	5304.77	.	AC=1;AF=0.500;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	0/1:527,280:0.35:807
chr16	70163825	rs4985403	G	C	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:122,123:0.50:245
chr16	70164248	rs7206450	T	C	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:76,63:0.45:139
chr16	70164334	rs10852462	A	G	4433.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:244,202:0.45:446
chr16	70164741	rs2549541	T	C	2428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=2.071;MLEAC=1;MLEAF=0.500;MQ=58.00;MQRankSum=-20.005;QD=3.84;ReadPosRankSum=0.901;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:473,159:0.25:632
chr16	70165793	rs4985507	G	C	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=833;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-3.307;QD=4.05;ReadPosRankSum=-1.136;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:607,222:0.27:829
chr16	70165914	rs2113175	T	C	1371.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:84,67:0.44:151
chr16	70166225	rs2549550	C	A	5195.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:331,257:0.44:588
chr16	70170004	rs8045700	C	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr16	70170016	rs8045569	A	G	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.732;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=1.193;MLEAC=1;MLEAF=0.500;MQ=48.06;MQRankSum=0.862;QD=6.62;ReadPosRankSum=2.337;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr16	70170222	rs59034887	G	T	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=961;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-1.682;QD=0.72;ReadPosRankSum=-1.318;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:824,135:0.14:959
chr16	70172890	rs142218067	C	T	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.253;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.290;MLEAC=1;MLEAF=0.500;MQ=45.39;MQRankSum=-3.038;QD=0.47;ReadPosRankSum=0.563;SOR=0.367;set=HC	GT:AD:AF:DP	0/1:150,22:0.13:172
chr16	70176076	rs2549125	G	T	382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-13.050;QD=1.32;ReadPosRankSum=1.288;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:245,44:0.15:289
chr16	70176321	rs113493832	CT	C	2559.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.916;ClippingRankSum=0.000;DB;DP=1023;ExcessHet=3.0103;FS=1.172;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-1.767;QD=2.88;ReadPosRankSum=0.508;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:581,309:0.35:890
chr16	70176451	rs202169520	C	T	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;ClippingRankSum=0.000;DB;DP=590;ExcessHet=3.0103;FS=7.666;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=0.433;QD=0.13;ReadPosRankSum=-1.709;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:524,64:0.11:588
chr16	70177648	rs2303200	G	A	4524.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:112,179:0.62:291
chr16	70180088	rs200566106	A	T	5951.77	.	AC=1;AF=0.500;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	0/1:537,325:0.38:862
chr16	70181537	rs145995386	C	T	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=1.780;MLEAC=1;MLEAF=0.500;MQ=47.09;MQRankSum=-4.496;QD=4.49;ReadPosRankSum=-0.414;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:155,68:0.30:223
chr16	70182249	rs62050975	C	T	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.580;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=57.11;MQRankSum=-3.613;QD=2.05;ReadPosRankSum=1.266;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:56,13:0.19:69
chr16	70182325	rs55843501	T	C	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.975;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=53.367;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-14.023;QD=0.97;ReadPosRankSum=-0.819;SOR=4.790;set=HC	GT:AD:AF:DP	0/1:246,34:0.12:280
chr16	70182375	rs62050977	T	C	4022.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.542;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=4.933;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-7.280;QD=7.92;ReadPosRankSum=-4.818;SOR=1.076;set=HC	GT:AD:AF:DP	0/1:384,124:0.24:508
chr16	70182390	rs62050978	T	G	4356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=4.756;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-5.822;QD=8.08;ReadPosRankSum=-2.275;SOR=1.059;set=HC	GT:AD:AF:DP	0/1:396,143:0.27:539
chr16	70182489	rs145754705	ACTTCCCTTCC	A	3727.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=9.991;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=4.260;QD=18.18;ReadPosRankSum=0.109;SOR=0.308;set=HC	GT:AD:AF:DP	0/1:105,100:0.49:205
chr16	70187164	rs2287979	G	A	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:70,89:0.56:159
chr16	70187270	rs2287980	T	G	863.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.352;ClippingRankSum=0.000;DB;DP=763;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=-1.759;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:639,116:0.15:755
chr16	70190401	rs6499302	C	T	6944.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:231,335:0.59:566
chr16	70191029	rs4985509	T	G	8392.77	.	AC=1;AF=0.500;AN=2;DB;DP=738;set=Intersection	GT:AD:AF:DP	0/1:334,400:0.54:734
chr16	70191161	rs11647087	C	T	1711.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,72:0.62:116
chr16	70211218	rs149087931	G	A	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.745;MLEAC=1;MLEAF=0.500;MQ=47.53;MQRankSum=-1.546;QD=1.46;ReadPosRankSum=-0.215;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:150,32:0.18:182
chr16	70219777	.	A	C	192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.145;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=44.026;MLEAC=1;MLEAF=0.500;MQ=51.56;MQRankSum=-8.455;QD=0.83;ReadPosRankSum=-0.129;SOR=3.803;set=HC	GT:AD:AF:DP	0/1:204,29:0.12:233
chr16	70287177	rs4081753	A	G	7728.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:188,357:0.66:545
chr16	70289732	rs138081804	G	A	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.00;ReadPosRankSum=0.475;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:156,81:0.34:237
chr16	70299655	rs117857165	G	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr16	70299692	rs72289034	TGCCCATCAGAAAATCCA	T	427.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:13,12:0.48:25
chr16	70350114	.	G	GT	234.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-0.478;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:96,39:0.29:135
chr16	70390853	.	CAA	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=1.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=1.103;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:24,9:0.27:33
chr16	70513384	rs11075764	C	G	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:39,55:0.59:94
chr16	70515600	rs6416698	T	G	2009.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:41,85:0.67:126
chr16	70530359	rs2303793	A	G	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	70531366	rs2303792	C	T	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	70531754	rs2303791	T	G	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	70546234	rs3762171	G	A	4302.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	70548297	rs3931036	G	A	4694.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	70553382	rs7204583	G	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	70560361	rs8051506	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	70563271	rs11075766	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr16	70566260	.	C	CAAAAAAAAAA	645.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=8.129;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-3.307;QD=49.67;ReadPosRankSum=1.738;SOR=4.977;set=HC	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	70566271	rs116505546	G	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=19.260;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-1.196;QD=13.97;ReadPosRankSum=5.376;SOR=3.820;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr16	70566371	rs151086841	A	G	4066.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:108,189:0.64:297
chr16	70569215	rs33910368	A	T	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	70575852	rs11645437	A	T	1817.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	70601254	rs7197262	G	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	70602221	rs12909	C	T	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr16	70603220	rs4985534	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	70680744	rs3813904	G	C	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr16	70680850	rs3813905	C	G	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:113,67:0.37:180
chr16	70690989	rs8046424	G	C	2647.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	70693872	rs3214847	C	CT	675.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=2.52;ReadPosRankSum=2.293;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:198,70:0.26:268
chr16	70694000	rs4985556	C	A	6210.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:127,287:0.69:414
chr16	70694991	rs36155323	A	G	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr16	70697664	.	G	A	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=-0.487;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:59,49:0.45:108
chr16	70699054	.	C	T	922.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:48,43:0.47:91
chr16	70708093	rs67662127	CAGTCTCAACAGCTATAGT	C	297.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr16	70714811	.	C	CGG	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.865;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-0.786;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:90,17:0.16:107
chr16	70726795	rs2278983	C	A	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:119,72:0.38:191
chr16	70726940	rs2278984	G	C	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr16	70732483	rs7201952	G	A	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr16	70732761	rs9673700	G	C	224.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr16	70796515	rs2305689	G	A	8015.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	70796535	rs2305690	C	T	7209.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr16	70816893	rs1875941	C	T	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr16	70818759	rs2271047	A	G	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	70841573	.	G	A	617.77	.	AC=1;AF=0.500;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	0/1:95,36:0.27:131
chr16	70900170	rs199978951	C	T	796.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.13;MQRankSum=-1.713;QD=15.62;ReadPosRankSum=0.555;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:19,32:0.63:51
chr16	70926214	.	G	A	126	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=1;HapScore=2;MGOF=1;MMLQ=23;MQ=46.13;NF=9;NR=0;PP=126;QD=17.8634680608;SC=TGCAACAGGAGTCGTACGATC;SbPval=1.0;Source=Platypus;TC=39;TCF=33;TCR=6;TR=9;WE=70926222;WS=70926204;set=Platypus	GT:AD:AF:DP	1/0:30,9:0.23:39
chr16	70935224	rs75445533	A	T	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	70954915	rs1798531	G	T	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.38;QD=31.24;SOR=3.784;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	70972595	rs79004160	T	C	6732.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.94;QD=26.20;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	70972784	rs1615602	A	G	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	70993881	rs76128005	CT	GA	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;JOINED;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr16	71025394	rs149427312	C	T	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.382;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=13.600;MLEAC=1;MLEAF=0.500;MQ=47.47;MQRankSum=-2.257;QD=2.27;ReadPosRankSum=-0.508;SOR=0.159;set=HC	GT:AD:AF:DP	0/1:98,29:0.23:127
chr16	71026137	rs145870479	TA	T	1887.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.91;QD=37.01;SOR=1.314;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	71054333	.	TTG	T	145.73	.	AC=1;AF=0.500;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr16	71100838	rs74361942	T	C	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:48,44:0.48:92
chr16	71101433	rs139282877	G	GA	111	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.09;QD=27.75;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	71209398	rs145925047	TACC	T	5594.73	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:268,160:0.37:428
chr16	71218926	rs3785347	T	A	649.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:62,33:0.35:95
chr16	71220880	rs12927616	T	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr16	71318577	rs3803704	T	C	840.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr16	71319539	rs3826247	C	T	6767.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	71319646	rs3096380	G	A	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	71319900	rs9928675	T	C	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.886;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=0.188;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr16	71406024	rs7203012	C	T	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	71411446	rs12445308	G	T	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	71416431	rs12919213	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	71417783	rs35885273	C	T	6385.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr16	71418562	rs367842304	CCACA	C	220.80	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.38;QD=36.80;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	71418572	rs111526151	A	G	229.84	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.20;QD=38.31;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	71419595	rs4327058	A	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	71423487	rs34538886	C	T	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr16	71464943	rs7195767	A	G	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,33:0.45:74
chr16	71465613	rs7203200	T	G	2550.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr16	71466088	rs4620964	A	G	22349.77	.	AC=2;AF=1.00;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	1/1:0,845:1.00:845
chr16	71483497	rs72795864	C	G	5850.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:159,257:0.62:416
chr16	71484621	rs66920642	CA	C	1212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.997;QD=11.44;ReadPosRankSum=0.854;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:23,83:0.78:106
chr16	71487206	rs2070832	T	C	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	71488175	rs34380814	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:193,115:0.37:308
chr16	71509685	rs2288489	C	G	6528.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	71509796	rs8050871	C	G	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:184,96:0.34:280
chr16	71603912	rs172650	C	A	2945.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr16	71607384	rs2432520	T	G	4129.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	71660115	rs4788820	G	C	741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=2.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.98;ReadPosRankSum=0.466;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:52,41:0.44:93
chr16	71660404	rs61753635	G	A	569.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.79;ReadPosRankSum=-1.524;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:160,44:0.22:204
chr16	71663545	.	TA	T	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=3.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.80;ReadPosRankSum=-1.186;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	71668800	rs7206470	G	A	754.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:46,38:0.45:84
chr16	71678679	rs7204608	G	C	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.133;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=1.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.13;ReadPosRankSum=2.371;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:139,65:0.32:204
chr16	71687002	.	CTT	C	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.821;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=3.916;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.096;QD=5.34;ReadPosRankSum=-0.852;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:24,14:0.37:38
chr16	71701248	rs1423983	G	A	359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=1.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.80;ReadPosRankSum=0.833;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:40,22:0.35:62
chr16	71703436	rs2032918	T	G	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,26:0.31:85
chr16	71718366	rs7195059	C	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:89,48:0.35:137
chr16	71757939	rs7201649	C	G	87.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr16	71772795	rs904764	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:74,28:0.27:102
chr16	71783729	rs117079376	T	A	4908.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:131,222:0.63:353
chr16	71784000	rs2270829	A	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:30,14:0.32:44
chr16	71790166	rs8053186	G	A	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr16	71792696	rs12919271	C	A	2623.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:233,139:0.37:372
chr16	71799347	rs12149092	A	G	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.173;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chr16	71801946	rs12149533	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:76,39:0.34:115
chr16	71801958	rs7192956	T	C	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr16	71804956	rs9635524	C	G	1661.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:232,103:0.31:335
chr16	71805160	rs4788443	G	A	337.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:35,16:0.31:51
chr16	71879868	rs4788563	A	C	102.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:20,7:0.26:27
chr16	71901648	rs17357420	T	C	250.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr16	71917058	rs2288029	G	A	1216.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:95,64:0.40:159
chr16	71928693	rs71386939	C	T	1074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.88;ReadPosRankSum=0.797;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:62,59:0.49:121
chr16	71928850	rs11075908	T	C	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr16	71955426	rs56089063	C	CAT	1002.73	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,29:0.31:93
chr16	71956511	rs148848854	AATGCCC	A	21725.73	.	AC=2;AF=1.00;AN=2;DB;DP=913;MQ=61.16;set=Intersection	GT:AD:AF:DP	1/1:7,834:0.99:841
chr16	71958052	rs7197486	A	G	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	0/1:335,152:0.31:487
chr16	71963924	rs34029919	C	T	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:64,38:0.37:102
chr16	71967783	rs12445641	C	T	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:109,42:0.28:151
chr16	71967927	rs17358402	C	T	2737.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:338,161:0.32:499
chr16	71968091	rs12149307	A	C	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:53,42:0.44:95
chr16	71968147	rs12149325	G	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr16	71969497	rs11865456	C	T	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:45,19:0.30:64
chr16	71971091	rs7191848	T	C	441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=3.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=-0.294;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:76,26:0.25:102
chr16	71981374	rs8050058	T	G	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr16	71981414	rs149635567	C	CTTTG	1276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.443;QD=11.40;ReadPosRankSum=2.284;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr16	71981630	rs9934803	T	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr16	71981652	rs9934812	T	G	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,11:0.58:19
chr16	71983929	rs35377660	A	T	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	71986764	rs11648353	G	A	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=6.892;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.98;ReadPosRankSum=1.312;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr16	71986946	rs7204708	A	G	394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.237;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=1.046;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:127,32:0.20:159
chr16	71987044	rs35601686	CAA	C	792.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr16	71987960	rs34041171	A	AC	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.032;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=-0.522;QD=3.10;ReadPosRankSum=-1.489;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr16	71988106	rs9921412	C	T	937.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.548;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:120,57:0.32:177
chr16	72007399	rs9925415	C	T	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	72011040	rs3929023	A	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	72011181	rs1559401	G	T	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr16	72011193	rs1559400	A	C	5181.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr16	72011261	rs1559399	A	G	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr16	72011450	rs1559398	G	A	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	72011456	rs139541803	G	GGTCTTC	1495.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	72012072	rs8053841	C	T	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	72012394	rs71153690	GTATA	G	646.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.04;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:1,18:0.95:19
chr16	72012400	rs62053844	A	G	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.60;ReadPosRankSum=1.678;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr16	72012402	rs62053845	A	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.60;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	72012404	rs62053846	A	G	712.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.60;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	72012406	rs370830204	A	G	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.43;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	72012408	.	A	G	709.77	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.43;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	72012410	rs371862331	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	72012412	.	A	G	707.77	.	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.32;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	72013797	rs7185272	G	C	9203.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr16	72018099	rs12443563	C	T	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	72020134	rs12708923	T	C	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	72020294	rs4788590	G	A	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	72020323	rs4788591	A	G	3644.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr16	72042825	rs3213423	T	G	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	72050885	rs11075914	G	C	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	72054984	rs1862752	G	T	3569.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr16	72057282	rs2288002	A	G	4355.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr16	72078043	rs763665	C	T	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	72088467	rs5472	A	G	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:23,112:0.83:135
chr16	72088652	rs9927981	C	T	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:162,178:0.52:340
chr16	72088675	rs4788458	T	C	5907.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	72089958	rs148260617	ATG	A	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.098;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=3.264;QD=2.24;ReadPosRankSum=-1.665;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:126,26:0.17:152
chr16	72097225	rs12918905	T	C	134.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.88;QD=33.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	72097230	rs12917768	C	G	134.03	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=44.68;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	72097279	rs28731397	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr16	72110948	rs12646	C	G	5729.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr16	72123992	rs7191127	G	T	2642.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr16	72124157	rs7190995	A	G	7172.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.95;QD=26.08;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chr16	72124219	rs7192730	T	C	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	72124495	rs2303285	A	C	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr16	72130203	rs1050361	C	G	4572.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr16	72130815	rs1050362	C	A	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.64;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	72131740	rs34749771	ACT	A	4231.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	72132356	rs11862813	C	T	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	72132713	rs2072142	C	T	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr16	72133211	rs2072141	G	A	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	72135014	rs1050363	T	C	11261.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	72135319	rs8043606	T	C	2429.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	72137561	rs2240243	G	A	8780.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr16	72139184	rs2074626	C	A	6430.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr16	72139396	rs150617	T	C	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr16	72139537	rs42544	T	C	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr16	72142038	rs36033103	G	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	72142072	rs8051882	C	T	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	72142895	rs9926156	G	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	72146441	rs7940	C	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	72146570	rs6680	T	C	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	72156666	rs35909200	T	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	72156842	rs16973716	T	G	4233.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr16	72157000	rs12935266	C	G	340.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	72158920	rs3812987	C	A	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:1,112:0.99:113
chr16	72158950	rs3812986	T	C	2219.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	72162855	rs6499562	G	A	3037.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	72205021	rs71391445	GA	G	1925.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	72821618	rs112443847	A	G	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=3.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.925;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:89,20:0.18:109
chr16	72827758	rs699444	T	C	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:41,105:0.72:146
chr16	72831111	rs79037957	G	C	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:80,172:0.68:252
chr16	72832135	rs740178	T	A	2142.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:69,95:0.58:164
chr16	72991286	rs2157786	C	T	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	72991660	rs10852515	C	G	7578.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr16	72991712	.	GCCA	G	56.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.963;ClippingRankSum=0.000;DP=312;ExcessHet=3.0103;FS=0.872;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.21;ReadPosRankSum=-0.080;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:248,20:0.07:268
chr16	72991715	rs4788682	A	G	5955.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:22,246:0.92:268
chr16	72992221	rs61735550	G	A	2761.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:223,141:0.39:364
chr16	72993831	rs7193297	A	C	1203.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:144,70:0.33:214
chr16	73126858	rs7189194	T	G	6423.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	73127515	rs79936602	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-0.338;SOR=0.568;set=HC	GT:AD:AF:DP	0/1:165,71:0.30:236
chr16	73127556	rs73591151	G	A	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-1.601;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:112,41:0.27:153
chr16	73164795	rs34115176	A	C	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.28;ReadPosRankSum=0.310;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:60,21:0.26:81
chr16	73165038	rs56203505	A	G	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.32;ReadPosRankSum=0.851;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:73,32:0.30:105
chr16	73517250	rs147828241	A	AAG	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.127;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.777;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr16	74320977	.	C	CA	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=0.699;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=0.34;ReadPosRankSum=0.412;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:214,45:0.17:259
chr16	74366531	rs3743922	A	C	3678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-4.035;QD=6.97;ReadPosRankSum=1.777;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:320,208:0.39:528
chr16	74366672	rs3743923	G	A	553.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr16	74366694	.	A	G	104.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:39,8:0.17:47
chr16	74376140	rs150563770	T	C	2290.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.499;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=50.60;MQRankSum=-2.116;QD=15.17;ReadPosRankSum=0.203;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:46,105:0.70:151
chr16	74382969	rs144852560	G	T	1193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.596;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=44.33;MQRankSum=-3.678;QD=16.81;ReadPosRankSum=0.117;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:25,46:0.65:71
chr16	74394425	rs3852692	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:121,81:0.40:202
chr16	74394671	rs62055171	T	C	4796.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:302,245:0.45:547
chr16	74394745	rs71391080	A	G	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:85,173:0.67:258
chr16	74425358	rs6564065	G	A	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:302,101:0.25:403
chr16	74425548	rs2868591	A	G	11195.77	.	AC=1;AF=0.500;AN=2;DB;DP=1213;set=Intersection	GT:AD:AF:DP	0/1:718,491:0.41:1209
chr16	74443401	.	T	C	2211.77	.	AC=2;AF=1.00;AN=2;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.70;QD=33.01;SOR=8.439;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr16	74443542	rs146555914	G	C	3250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;ClippingRankSum=0.000;DB;DP=1259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.74;MQRankSum=0.992;QD=2.59;ReadPosRankSum=0.898;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:989,268:0.21:1257
chr16	74447514	rs2650549	T	C	906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.358;ClippingRankSum=0.000;DB;DP=596;ExcessHet=3.0103;FS=2.458;MLEAC=1;MLEAF=0.500;MQ=56.49;MQRankSum=-18.596;QD=1.53;ReadPosRankSum=0.811;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:492,102:0.17:594
chr16	74485788	rs3851731	C	T	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,54:0.72:75
chr16	74491733	rs2288054	A	G	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:13,47:0.78:60
chr16	74493752	.	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=1.896;QD=0.63;ReadPosRankSum=-1.552;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:112,27:0.19:139
chr16	74501856	rs6564117	C	G	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	74504005	rs2303279	T	C	3910.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:97,186:0.66:283
chr16	74504097	rs12716764	G	C	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	74514032	rs1005715	T	C	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.945;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=0.553;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:25,17:0.40:42
chr16	74516796	rs75124206	T	C	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:21,31:0.60:52
chr16	74537591	rs4887772	C	T	10200.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr16	74542837	.	GA	G	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.82;ReadPosRankSum=-1.492;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:31,9:0.23:40
chr16	74566090	rs200740673	AAAT	A	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=-0.455;QD=12.66;ReadPosRankSum=-0.175;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr16	74660174	rs12933037	G	A	1029.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr16	74660185	rs78219119	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:57,34:0.37:91
chr16	74662597	rs11149759	C	T	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr16	74664743	rs7193541	T	C	2893.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:88,132:0.60:220
chr16	74664810	rs7188880	A	T	2831.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:71,130:0.65:201
chr16	74664969	rs7193959	T	A	807.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	74666634	rs4072450	G	C	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	74670458	rs4888262	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr16	74694731	rs79470274	C	A	195.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,12:0.25:48
chr16	74695079	rs8058922	G	T	7901.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr16	74706298	rs4888274	A	T	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:40,84:0.68:124
chr16	74706349	rs9783779	T	C	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.33;ReadPosRankSum=-1.352;SOR=0.946;set=HC	GT:AD:AF:DP	0/1:168,76:0.31:244
chr16	74709206	rs11862413	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:77,40:0.34:117
chr16	74709737	rs7184423	C	A	3331.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:44,150:0.77:194
chr16	74712905	rs6564158	A	T	1957.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	74750405	rs2301865	G	A	9734.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr16	74760292	rs11295057	CT	C	589.82	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:5,35:0.88:40
chr16	74908439	rs2870148	C	T	3226.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	74920374	rs4888305	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr16	74943867	rs113238843	G	GT	1127.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.554;QD=9.64;ReadPosRankSum=0.232;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:32,85:0.73:117
chr16	74943890	rs12325318	A	G	4263.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	74983971	rs76662748	G	A	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr16	74985516	rs3743921	T	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	74999617	rs4888324	A	C	18562.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,410:1.00:410
chr16	74999625	rs4887796	A	T	19111.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.04;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr16	75034133	rs6564195	A	G	8589.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,307:1.00:308
chr16	75034214	rs34462287	C	A	10833.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr16	75138927	rs2287989	A	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr16	75146711	rs34195333	C	G	12708.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr16	75147519	.	C	T	1307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=4.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.109;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:268,88:0.25:356
chr16	75148604	rs755099	G	A	6958.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	75200347	rs112330010	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.349;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-0.680;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:27,13:0.33:40
chr16	75200378	rs9929570	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.602;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:32,17:0.35:49
chr16	75200416	rs7200789	T	C	462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=1.256;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr16	75238103	rs4737	C	T	13017.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr16	75240935	rs57900557	G	C	1110.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr16	75263974	rs6564241	T	C	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	75267676	rs4888361	A	G	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	75267956	rs58383536	C	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr16	75269267	rs3169330	A	G	12550.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr16	75269477	rs61729595	A	C	4783.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:134,216:0.62:350
chr16	75269534	rs3743613	C	T	3658.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:402,207:0.34:609
chr16	75269958	rs10623347	C	CCA	908.73	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:38,34:0.47:72
chr16	75270721	rs2278020	C	A	1008.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:90,53:0.37:143
chr16	75276295	rs7195938	A	G	2238.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr16	75276775	rs1035539	G	A	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr16	75277344	rs4888363	A	T	8033.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr16	75277480	rs4887810	C	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr16	75281964	rs1862737	A	C	2455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=2.332;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=0.644;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:208,137:0.40:345
chr16	75285164	rs1862738	A	C	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	75300708	rs11149811	C	G	4649.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	75301605	rs9319482	A	G	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr16	75327700	rs6625	G	A	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,29:0.63:46
chr16	75327916	rs6624	A	G	11170.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr16	75338855	rs3743607	C	T	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=5.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.194;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:163,56:0.26:219
chr16	75339131	rs7192981	T	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	75445605	rs1109341	G	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr16	75445675	rs1109342	G	A	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr16	75445906	rs247435	C	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	75448273	rs8056236	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	75448659	rs8051407	A	G	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=0.807;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	75467076	rs3833048	G	GC	95.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,6:0.22:27
chr16	75498252	rs150429885	C	CT	1943.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=3.579;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.479;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:150,58:0.28:208
chr16	75498253	rs34904236	G	T	1952.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.566;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.34;ReadPosRankSum=1.434;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:151,58:0.28:209
chr16	75563330	rs3826107	G	A	7548.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:171,338:0.66:509
chr16	75563746	rs8048818	T	G	13131.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	0/1:213,562:0.73:775
chr16	75564287	rs3784932	T	C	2706.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:66,128:0.66:194
chr16	75565420	rs2641806	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr16	75575410	rs7202717	G	A	2403.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:50,109:0.69:159
chr16	75579233	rs2738801	A	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:27,68:0.72:95
chr16	75579470	rs200769675	T	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834;ClippingRankSum=-0.000;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=14.13;ReadPosRankSum=-0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,4:0.67:6
chr16	75579924	rs8055668	A	C	3859.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:84,174:0.67:258
chr16	75590113	rs3743602	C	G	2145.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:68,99:0.59:167
chr16	75634014	rs7206481	A	G	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,57:0.67:85
chr16	75646685	rs3743598	G	T	3031.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:83,135:0.62:218
chr16	75652359	rs138033682	AT	CC	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;JOINED;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr16	75652407	.	C	CA	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.919;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=2.252;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.765;QD=0.96;ReadPosRankSum=-0.027;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:83,27:0.25:110
chr16	75654031	rs11648478	A	T	2707.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:40,105:0.72:145
chr16	75665019	rs7189895	A	G	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:38,81:0.68:119
chr16	75667954	rs6564270	C	T	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:94,117:0.55:211
chr16	75703213	rs199883674	T	TA	987.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=1.142;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:18,68:0.79:86
chr16	75730037	rs5817959	T	TA	1340.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:78,45:0.37:123
chr16	75794003	rs12445123	C	A	3035.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:319,175:0.35:494
chr16	75794714	.	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DP=317;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=2.286;QD=0.42;ReadPosRankSum=0.675;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:258,53:0.17:311
chr16	75794738	rs7205764	T	C	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.463;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=-0.665;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:290,93:0.24:383
chr16	76311602	rs59314262	G	GT	8440.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr16	76461273	rs7192076	A	C	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:21,38:0.64:59
chr16	76461519	rs9927638	C	A	2496.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:82,115:0.58:197
chr16	76461588	rs9938200	A	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:25,32:0.56:57
chr16	76482546	rs56137120	C	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	76482910	rs3947083	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr16	76495842	rs35994137	C	A	950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-1.594;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:24,46:0.66:70
chr16	76496025	rs57292037	A	G	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:18,19:0.51:37
chr16	76496131	rs34782687	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr16	76501222	rs72797097	G	A	688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=0.972;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:45,34:0.43:79
chr16	76501542	rs1002974	A	G	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr16	76523792	rs7201030	A	G	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	76532392	rs12932943	C	T	593.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:41,28:0.41:69
chr16	76532583	rs12933808	A	G	9005.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:2,352:0.99:354
chr16	76555015	rs11353699	CT	C	3235.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=17.59;ReadPosRankSum=0.139;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:10,174:0.95:184
chr16	76569754	rs6564348	A	T	1616.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.197;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	76587148	rs9938561	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:52,29:0.36:81
chr16	76587647	rs4243123	G	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr16	76902847	rs7500280	T	C	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.19;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	76902850	rs7499278	G	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	77225217	rs3214483	A	AG	751.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:35,32:0.48:67
chr16	77227180	rs2241416	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:29,20:0.41:49
chr16	77228629	rs2232503	A	G	14337.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr16	77228866	rs2232504	T	C	6898.77	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:164,319:0.66:483
chr16	77231935	rs2232509	C	T	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:17,5:0.23:22
chr16	77233338	rs8398	C	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:44,88:0.67:132
chr16	77233394	rs4888607	A	G	2533.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr16	77240217	rs9928151	G	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	77242035	rs9933799	G	A	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr16	77242083	rs9934426	C	G	1370.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	77242284	rs1424146	G	A	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr16	77242513	rs2343035	C	T	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:27,19:0.41:46
chr16	77246024	rs376246576	C	T	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.827;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:17,22:0.56:39
chr16	77246218	rs13331769	G	A	145.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	77246517	rs62049594	C	A	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=1.180;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:67,31:0.32:98
chr16	77246795	rs2278049	C	G	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-2.636;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:279,105:0.27:384
chr16	77246847	rs2278048	T	G	2505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;ClippingRankSum=0.000;DB;DP=554;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=4.54;ReadPosRankSum=1.163;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:397,155:0.28:552
chr16	77246953	rs2278047	G	C	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:224,123:0.35:347
chr16	77246988	rs7203616	T	G	5751.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr16	77281779	rs35625788	GTC	G	651.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	77325325	rs35478105	G	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:97,39:0.29:136
chr16	77327211	rs67517591	T	TA	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.976;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=-0.086;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:74,20:0.21:94
chr16	77327226	rs4888618	C	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	77334371	.	G	T	566.77	.	AC=1;AF=0.500;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,24:0.63:38
chr16	77353973	rs9930984	G	T	3080.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:70,138:0.66:208
chr16	77359919	rs11640912	A	T	5155.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:123,231:0.65:354
chr16	77360019	rs62044892	G	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:29,39:0.57:68
chr16	77389956	rs8059275	A	G	6021.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr16	77393207	rs2650907	G	C	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr16	77393445	.	GGAAAA	G,GA	1864.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=54;set=Intersection	GT:AF:DP	1/2:0.34,0.64:44
chr16	77393450	rs114891228	A	C	311.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,24:0.55:44
chr16	77393451	.	A	C	90.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.327;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:30,15:0.33:45
chr16	77395948	rs1909802	C	G	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	77397899	rs1948718	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	77398081	rs1948719	T	C	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	77398386	rs2562119	A	T	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr16	77401684	rs2434895	T	G	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	77756613	rs2914456	G	A	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr16	77769369	rs308926	C	T	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.827;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	77769647	rs186305	C	T	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	77769679	rs17716789	C	G	399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=-1.467;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:74,30:0.29:104
chr16	77775459	rs11648791	G	A	3056.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	77850966	rs2966053	T	C	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:135,58:0.30:193
chr16	77850999	rs2966052	A	G	733.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:84,41:0.33:125
chr16	77918781	.	T	C	426.77	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,16:0.80:20
chr16	78005906	rs77818551	G	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.368;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:103,32:0.24:135
chr16	78011559	rs3751769	C	T	2289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=6.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.05;ReadPosRankSum=-2.901;SOR=0.356;set=HC	GT:AD:AF:DP	0/1:54,109:0.67:163
chr16	78062159	rs2075738	C	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:107,49:0.31:156
chr16	78062190	rs2735403	T	C	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr16	78062219	rs2204891	C	T	242.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:42,15:0.26:57
chr16	78063000	rs7197560	T	C	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=0.228;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:82,47:0.36:129
chr16	78063064	rs7190832	G	T	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:108,56:0.34:164
chr16	78063143	rs7192416	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.367;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.67;ReadPosRankSum=0.010;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:75,22:0.23:97
chr16	78085754	rs2344923	C	A	5778.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr16	78085836	rs7203483	C	T	4737.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:144,222:0.61:366
chr16	78142209	rs4887937	T	C	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.968;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.178;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.068;SOR=0.238;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr16	78143607	rs2287972	C	T	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.955;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=-1.018;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:102,48:0.32:150
chr16	78198192	rs2303191	T	C	1775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-1.150;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:228,111:0.33:339
chr16	78312489	rs8048830	G	T	714.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.536;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.383;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:32,20:0.38:52
chr16	78312497	rs8050128	C	A	733.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=-0.302;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr16	78312527	rs77067228	A	G	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-3.441;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr16	78420775	rs11545029	G	A	7443.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	78725014	rs6564577	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:131,54:0.29:185
chr16	78790765	rs7199110	C	T	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:54,81:0.60:135
chr16	79245465	rs384216	T	C	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr16	79245820	rs383362	G	T	5361.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr16	79245956	rs2288034	C	G	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	79245961	rs2288033	T	C	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.40;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,135:1.00:135
chr16	79246078	rs2288032	G	A	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	79619727	rs60080524	GAAA	G	2088.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.049;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.396;QD=31.18;ReadPosRankSum=2.186;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:4,63:0.94:67
chr16	79619835	rs60533944	G	A	379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.341;QD=3.69;ReadPosRankSum=0.855;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:75,28:0.27:103
chr16	79628536	rs66467731	AT	A	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.937;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=1.120;QD=8.63;ReadPosRankSum=0.759;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:13,26:0.67:39
chr16	79633805	rs5818251	TGCCGCC	TGCC,T	5832.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=179;set=Intersection	GT:AF:DP	1/1:1.00:129
chr16	80574886	rs9922406	T	C	9284.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr16	80577098	rs8049769	G	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	80581547	rs6564762	C	T	2257.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:59,97:0.62:156
chr16	80581580	rs6564763	A	C	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:83,156:0.65:239
chr16	80581631	rs6564764	G	A	9944.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr16	80582867	rs9937217	G	T	1531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=1.324;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:238,98:0.29:336
chr16	80583497	rs11866734	C	T	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:337,187:0.36:524
chr16	80584342	rs8182107	A	C	788.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:51,35:0.41:86
chr16	80704779	rs76515952	C	T	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=3.246;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=0.121;SOR=0.351;set=HC	GT:AD:AF:DP	0/1:36,36:0.50:72
chr16	80704886	rs7195952	T	C	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr16	80718879	rs8049284	A	G	4601.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr16	80719086	rs8047798	G	C	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	81010073	rs1127390	C	T	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.767;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=2.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.913;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:69,29:0.30:98
chr16	81012303	rs9937731	C	A	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:60,31:0.34:91
chr16	81014700	rs1477381	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr16	81015560	rs2549822	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:24,58:0.71:82
chr16	81022203	rs34522854	TA	T	1156.73	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:34,66:0.66:100
chr16	81022232	rs2549833	T	C	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,54:0.67:81
chr16	81025372	rs2244452	A	T	1063.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:22,41:0.65:63
chr16	81025490	rs2113196	A	C	3740.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:115,172:0.60:287
chr16	81025506	rs2113197	T	A	4334.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:123,198:0.62:321
chr16	81050817	rs9889194	T	C	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr16	81050965	rs935939	A	T	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	81051203	rs11866803	T	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.730;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:21,12:0.36:33
chr16	81051327	rs935940	C	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	81053682	rs10602593	CT	C	536.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,36:0.77:47
chr16	81056111	rs9921914	C	A	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:74,48:0.39:122
chr16	81058170	rs112620608	T	TCAACTCAGC	124.73	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:2,2:0.50:4
chr16	81060124	rs11150336	C	T	435.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:70,29:0.29:99
chr16	81061827	rs2549887	G	A	3218.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:97,150:0.61:247
chr16	81062030	rs2549888	G	T	1589.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:26,60:0.70:86
chr16	81062151	rs35608064	CTT	C	9097.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.84;ReadPosRankSum=0.124;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:71,224:0.76:295
chr16	81062157	rs114305409	T	C	8894.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:87,221:0.72:308
chr16	81062171	rs2602428	C	T	9958.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:114,272:0.70:386
chr16	81066159	.	GT	G	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-0.958;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:120,30:0.20:150
chr16	81069449	rs2602430	A	G	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	81077915	rs2257378	T	C	14877.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr16	81087529	rs9926366	G	A	1839.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:37,79:0.68:116
chr16	81094760	rs804884	A	G	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	81095363	rs804885	C	T	9485.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr16	81118289	rs7187102	C	T	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=25.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr16	81121145	rs7200400	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=27.57;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr16	81129822	rs8052579	G	A	273.18	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	81142257	rs1869348	T	C	8434.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr16	81142358	rs4520846	C	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr16	81145630	rs8053975	C	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	81145664	rs8054611	A	G	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	81145675	rs8059153	T	C	3220.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	81145737	rs8059318	T	G	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,276:1.00:277
chr16	81145755	rs11647962	A	T	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr16	81145807	rs8054182	C	G	9221.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr16	81151122	rs4889238	A	C	18063.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr16	81151163	rs8053191	C	T	13530.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr16	81155068	.	C	CA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.23;ReadPosRankSum=0.624;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:111,21:0.16:132
chr16	81157324	rs4889241	G	A	2711.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr16	81157385	rs8050204	G	T	633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.727;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.552;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=2.611;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:77,41:0.35:118
chr16	81157577	rs76970623	T	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	81161473	rs145602984	G	GTACTGCCAAGCCTGGGGAAAGC	3832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=0.628;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.868;QD=9.33;ReadPosRankSum=1.308;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:319,92:0.22:411
chr16	81161552	rs16954717	C	T	2459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.562;ClippingRankSum=0.000;DB;DP=558;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.818;QD=4.42;ReadPosRankSum=1.673;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:403,153:0.28:556
chr16	81161569	rs75417926	T	G	5657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.456;QD=10.50;ReadPosRankSum=0.618;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:379,160:0.30:539
chr16	81161571	rs80097269	T	C	5630.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=540;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.421;QD=10.47;ReadPosRankSum=0.282;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:376,162:0.30:538
chr16	81161578	rs7206183	G	A	5727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.356;QD=10.61;ReadPosRankSum=-0.090;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:373,167:0.31:540
chr16	81161608	rs16954722	T	C	2340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.646;QD=4.70;ReadPosRankSum=1.639;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:348,150:0.30:498
chr16	81161712	rs113658800	TA	T	1714.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:109,51:0.32:160
chr16	81161722	rs71183779	A	C	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:102,46:0.31:148
chr16	81161737	rs2084959	C	T	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:72,38:0.35:110
chr16	81161764	rs16954729	G	A	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:42,21:0.33:63
chr16	81164274	rs11150345	C	G	787.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	81164289	rs34186266	C	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=10.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.515;SOR=0.016;set=HC	GT:AD:AF:DP	0/1:12,6:0.33:18
chr16	81167314	rs3826050	G	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	81167342	rs11150346	T	G	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr16	81173030	rs4889243	A	G	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	81173056	rs62053173	A	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.088;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=0.557;SOR=2.465;set=HC	GT:AD:AF:DP	0/1:17,35:0.67:52
chr16	81173136	rs12918619	T	C	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr16	81173233	rs141992322	G	C	2929.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:78,133:0.63:211
chr16	81183266	rs8044870	A	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	81183624	rs10617579	CTT	C	297.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-0.224;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr16	81185326	rs11649028	G	A	3413.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	81185416	rs8061038	A	G	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.14;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr16	81190294	rs4889251	G	A	1861.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	81190308	rs4889252	G	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	81190328	rs4889253	G	A	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	81190601	rs1453325	T	C	6231.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr16	81190613	rs1453324	A	G	5877.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:1,216:1.00:217
chr16	81190708	rs1453323	A	C	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	81193156	rs10871403	C	G	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:130,74:0.36:204
chr16	81193433	rs734823	G	C	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:36,99:0.73:135
chr16	81194382	rs2317117	T	A,C	8137.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=349;set=Intersection	GT:AF:DP	1/2:0.32,0.68:347
chr16	81197117	rs4889255	A	G	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr16	81198441	rs7191852	T	C	462.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	81199429	rs12925622	G	A	3778.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:107,176:0.62:283
chr16	81199520	rs12931217	T	C	3609.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr16	81199538	rs12931227	T	C	2471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.68;ReadPosRankSum=-1.159;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:48,66:0.58:114
chr16	81199544	rs12925771	G	A	2441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.61;ReadPosRankSum=-1.031;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:47,61:0.56:108
chr16	81199554	rs12926898	CA	TG	2226.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.789;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.698;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.27;ReadPosRankSum=-1.051;SOR=0.966;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chr16	81199572	rs12927442	A	G	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr16	81199600	rs12599110	G	A	600.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr16	81201448	rs11313252	G	A	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr16	81201507	rs34188236	C	A	2184.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:54,98:0.64:152
chr16	81201620	rs35292101	C	A	4464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=0.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.04;ReadPosRankSum=-1.927;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:196,122:0.38:318
chr16	81201625	rs34504526	G	A	4528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.916;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-2.616;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:186,122:0.40:308
chr16	81201774	rs34172014	C	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr16	81201837	rs35055907	G	A	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr16	81201853	rs72822032	C	A	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr16	81201868	rs34722210	G	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.52;ReadPosRankSum=-1.173;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr16	81201872	rs76815905	C	T	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.55;ReadPosRankSum=-2.011;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	81204188	rs1901819	A	G	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr16	81204423	rs11640279	T	C	3974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.69;ReadPosRankSum=-3.004;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:372,222:0.37:594
chr16	81204720	rs35271642	C	A	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:60,121:0.67:181
chr16	81208056	rs745209	A	G	1086.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,29:0.46:63
chr16	81208175	rs11150361	C	T	7154.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:158,320:0.67:478
chr16	81208203	rs11150362	G	T	8476.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:173,386:0.69:559
chr16	81208515	rs12596941	G	A	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:53,92:0.63:145
chr16	81209207	rs2317114	T	C	1493.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:30,67:0.69:97
chr16	81211496	rs9935113	C	A	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:115,63:0.35:178
chr16	81211548	rs9934605	G	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:137,81:0.37:218
chr16	81211720	rs9925522	A	G	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr16	81213081	rs4889259	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chr16	81213142	rs4889260	C	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:23,59:0.72:82
chr16	81213378	rs4889261	A	G	3617.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:64,160:0.71:224
chr16	81213422	rs4889262	C	T	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:34,91:0.73:125
chr16	81219187	rs13339342	C	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:172,95:0.36:267
chr16	81219329	rs9319563	G	T	13414.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:1,509:1.00:510
chr16	81219396	rs9674042	T	A	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:79,144:0.65:223
chr16	81222447	rs10714779	CA	C	544.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.596;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.748;QD=6.98;ReadPosRankSum=1.324;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:22,56:0.72:78
chr16	81222672	rs4889271	T	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:22,26:0.54:48
chr16	81224234	rs12716909	T	C	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr16	81224423	rs11647179	G	A	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr16	81224495	rs72823811	G	C	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chr16	81228814	rs72823822	G	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr16	81232275	rs7205673	G	A	1292.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:29,58:0.67:87
chr16	81232564	rs7194871	T	G	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:105,197:0.65:302
chr16	81232743	rs9924038	G	C	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:118,54:0.31:172
chr16	81240931	rs11150368	T	C	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr16	81241098	rs11150369	C	T	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:60,132:0.69:192
chr16	81241249	rs72831349	T	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:9,18:0.67:27
chr16	81241269	rs4077826	G	A	522.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=1.044;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr16	81241965	rs72831353	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:11,50:0.82:61
chr16	81242085	rs7499175	C	T	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.743;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=0.754;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:116,63:0.35:179
chr16	81242194	rs6564838	T	C	5078.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=25.65;ReadPosRankSum=1.037;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:70,128:0.65:198
chr16	81242198	rs7499011	G	A	5087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=1.156;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=25.57;ReadPosRankSum=0.948;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:70,129:0.65:199
chr16	81242366	rs6564839	T	C	288.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr16	81242386	rs6564840	T	G	136.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr16	81248745	rs8060294	A	G	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:100,131:0.57:231
chr16	81248935	rs8044334	T	G	1331.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr16	81249954	rs7191351	T	A	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:64,151:0.70:215
chr16	81253526	rs141224532	A	ATTATT	406.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr16	81253637	rs9924275	A	G	3000.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=4.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.44;ReadPosRankSum=0.916;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:53,75:0.59:128
chr16	81253642	rs62052455	AG	TC	3098.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=5.467;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.95;ReadPosRankSum=0.859;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:57,78:0.58:135
chr16	81253745	rs9934272	C	G	3712.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:134,176:0.57:310
chr16	81253759	rs9924371	A	G	3809.77	.	AC=1;AF=0.500;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	0/1:143,188:0.57:331
chr16	81253917	rs9924530	A	G	3487.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:100,162:0.62:262
chr16	81254023	rs35807120	T	TA	935.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr16	81272625	rs11339898	AT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.299;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=0.638;QD=1.03;ReadPosRankSum=1.551;SOR=1.077;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr16	81279120	rs28370522	T	C	1847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=1.049;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:288,122:0.30:410
chr16	81295902	rs7500996	T	C	873.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=5.094;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.086;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:182,65:0.26:247
chr16	81301460	rs34500060	G	C	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr16	81301694	rs12934922	A	T	676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.644;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.643;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:195,53:0.21:248
chr16	81303759	rs4889294	T	C	1169.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:95,55:0.37:150
chr16	81314381	rs7188650	T	C	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:14,7:0.33:21
chr16	81314496	rs7501331	C	T	1511.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr16	81320830	rs8048342	A	G	1213.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr16	81528953	rs17777059	A	G	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:15,17:0.53:32
chr16	81641452	rs7203914	A	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:19,5:0.21:24
chr16	81679151	rs4889356	A	G	8002.77	.	AC=1;AF=0.500;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	0/1:186,376:0.67:562
chr16	81679293	rs111585479	T	C	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:47,59:0.56:106
chr16	81704014	rs12920501	C	G	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=1.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=1.480;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:19,8:0.30:27
chr16	81704033	rs8044418	C	G	95.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.195;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:12,7:0.37:19
chr16	81726863	rs2288011	C	G	7742.77	.	AC=1;AF=0.500;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	0/1:228,363:0.61:591
chr16	81730005	rs72831120	A	G	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr16	81730381	rs9933631	C	A	13746.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr16	81730396	rs151182692	T	TA	4985.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.107;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=6.380;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:320,147:0.31:467
chr16	81730397	rs370207043	G	A	5244.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=1.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.11;ReadPosRankSum=2.761;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:320,152:0.32:472
chr16	81733268	rs4889369	C	T	2825.77	.	AC=1;AF=0.500;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	0/1:305,160:0.34:465
chr16	81737695	rs72831128	G	A	4348.77	.	AC=1;AF=0.500;AN=2;DB;DP=816;set=Intersection	GT:AD:AF:DP	0/1:551,262:0.32:813
chr16	81737838	rs190435839	C	T	119.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,9:0.25:36
chr16	81739376	rs3968320	T	A	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	81816733	rs8045964	C	T	356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.053;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-1.850;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:54,23:0.30:77
chr16	81816787	rs4476171	T	A	2389.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr16	81816818	rs72834729	C	T	1298.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.881;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.951;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.03;ReadPosRankSum=-0.684;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:22,59:0.73:81
chr16	81819486	rs4354929	C	G	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=0.111;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:44,27:0.38:71
chr16	81819768	rs1143685	T	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:45,42:0.48:87
chr16	81891998	rs4341734	G	C	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:114,56:0.33:170
chr16	81892041	rs5818357	GGGA	G	1134.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:106,37:0.26:143
chr16	81892048	rs5016604	A	C	285.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.094;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.518;SOR=1.183;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chr16	81892708	rs4888183	T	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:72,40:0.36:112
chr16	81902797	rs12445580	A	G	6538.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr16	81903055	rs4889420	G	A	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr16	81904374	rs146168517	A	AT	437.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr16	81904375	rs35039495	C	A	446.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	81904433	rs34761601	TG	T	1377.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	81904674	rs7192509	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	81904711	rs7192535	T	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	81927559	rs369775573	TTTC	T	280.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-0.333;SOR=0.402;set=HC	GT:AD:AF:DP	0/1:39,12:0.24:51
chr16	81929488	rs1143688	C	T	9407.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr16	81931362	rs8053636	T	C	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	81931403	rs8049305	A	G	2950.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr16	81939150	rs4435248	G	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:44,39:0.47:83
chr16	81941107	rs79732035	C	T	367.56	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:1,13:0.93:14
chr16	81941319	rs1143689	C	T	2718.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:68,125:0.65:193
chr16	81946423	rs4243222	C	T	1576.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:36,66:0.65:102
chr16	81946471	rs4243223	G	T	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr16	81953081	rs12448130	T	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr16	81953368	rs12448152	A	G	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	81954789	rs12446127	C	G	4147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.131;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.927;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.766;QD=13.97;ReadPosRankSum=-2.321;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:111,186:0.63:297
chr16	81956927	rs4485360	C	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr16	81962071	rs4366702	A	C	746.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr16	81964977	rs7187863	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr16	81971403	rs1071644	T	C	1731.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:145,94:0.39:239
chr16	81973474	rs4405546	C	A	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr16	81973805	rs12923387	A	T	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr16	81973807	rs141767011	G	GTGCA	979.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr16	82124776	rs2955154	G	T	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	82182832	rs11859599	C	G	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	82184967	.	A	G	575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.750;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.93;ReadPosRankSum=-0.768;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:27,31:0.53:58
chr16	82197883	rs2303266	G	A	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr16	82203705	rs2303265	A	C	16981.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.975;set=HC	GT:AD:AF:DP	1/1:0,375:1.00:375
chr16	82203711	rs2303264	G	T	17064.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,387:1.00:387
chr16	82203742	rs1134847	T	C	22223.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr16	82203758	rs2303262	C	T	22584.77	.	AC=2;AF=1.00;AN=2;DB;DP=500;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,500:1.00:500
chr16	82203768	rs2303261	G	T	21869.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,481:1.00:481
chr16	82203786	rs2303260	C	G	19334.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr16	82672920	rs12444222	G	A	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:140,76:0.35:216
chr16	82673047	rs4782724	C	T	11712.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr16	82882118	rs1585533	A	G	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr16	82882188	rs13336316	G	T	3609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.328;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.49;ReadPosRankSum=0.688;SOR=1.005;set=HC	GT:AD:AF:DP	0/1:49,184:0.79:233
chr16	82882283	rs9935254	C	G	18028.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr16	82891891	.	G	T	1266.77	.	AC=1;AF=0.500;AN=2;DP=89;set=Intersection	GT:AD:AF:DP	0/1:33,56:0.63:89
chr16	82917768	rs929847	G	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr16	82917852	rs929848	T	C	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	83065664	rs6565105	G	A	3904.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:75,176:0.70:251
chr16	83065904	rs7197530	T	C	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:13,49:0.79:62
chr16	83065965	rs2228685	T	A	254.78	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,11:0.85:13
chr16	83159350	rs7196370	A	C	1839.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	83214480	rs7188594	C	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:66,83:0.56:149
chr16	83251210	rs4572385	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr16	83520078	rs2306907	G	A	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=1.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=0.175;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:108,29:0.21:137
chr16	83542061	rs4782540	C	T	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,14:0.74:19
chr16	83658649	rs11639522	C	G	3464.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:114,159:0.58:273
chr16	83658857	rs17760896	C	G	449.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:35,21:0.38:56
chr16	83753815	rs72797298	T	C	4107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=718;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=6.312;QD=5.75;ReadPosRankSum=-1.345;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:471,243:0.34:714
chr16	83753910	rs142886033	TCATGCACACA	T	1937.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.439;MLEAC=1;MLEAF=0.500;MQ=60.87;MQRankSum=7.828;QD=6.40;ReadPosRankSum=-0.992;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:194,109:0.36:303
chr16	83775093	.	G	GTATA	185	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=4;MGOF=14;MMLQ=25;MQ=60.47;NF=0;NR=10;PP=185;QD=19.8;SC=ATGTGTGTGTGTATATATATA;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=10;WE=83775113;WS=83775083;set=Platypus	GT:AD:AF:DP	1/0:5,10:0.67:15
chr16	83775105	.	A	ATG	239.73	.	AC=1;AF=0.500;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr16	83813393	rs58658289	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr16	83813511	rs57930285	G	A	3376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.205;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.87;ReadPosRankSum=1.190;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:245,97:0.28:342
chr16	83813514	rs16961737	A	G	3364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.458;ClippingRankSum=0.000;DB;DP=360;ExcessHet=3.0103;FS=1.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=0.804;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:257,101:0.28:358
chr16	83816828	rs153654	A	G	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr16	83817019	rs1048612	A	G	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr16	83828488	rs74786055	A	G	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.957;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.771;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=1.747;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:37,12:0.24:49
chr16	83828544	rs3743617	C	G	1148.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:140,65:0.32:205
chr16	83842792	rs8053753	G	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr16	83873259	rs435383	G	A	468.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=24.67;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	83873285	rs435367	G	A	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr16	83873300	rs146203605	T	TTG	478.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr16	83873312	rs367415	C	G	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.53;QD=35.51;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	83886468	rs150603407	GTGCACACA	G	15456.73	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr16	83933296	rs446036	T	C	1987.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	83940494	rs3815805	C	T	1922.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:49,87:0.64:136
chr16	83982460	rs4782863	A	G	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	83982960	rs4782864	C	T	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr16	83983071	rs4782865	C	T	6908.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr16	83983755	rs2245008	G	A	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr16	83983775	rs12933677	T	C	9514.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr16	83983867	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=61;MMLQ=23;MQ=57.93;NF=510;NR=427;PP=2965;QD=20;SC=GGCAGATACGCACACACAGAC;SbPval=0.55;Source=Platypus;TC=938;TCF=511;TCR=427;TR=937;WE=83983875;WS=83983857;set=Platypus	GT:AD:AF:DP	1/1:1,937:1.00:938
chr16	83983892	.	CA	TG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=45;MMLQ=20;MQ=57.29;NF=431;NR=394;PP=2947;QD=20;SC=GCATACATACCAGCACACACG;SbPval=0.55;Source=Platypus;TC=833;TCF=434;TCR=399;TR=825;WE=83983901;WS=83983882;set=Platypus	GT:AD:AF:DP	1/1:8,825:0.99:833
chr16	83983920	.	G	A	2965	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=1;HapScore=1;MGOF=59;MMLQ=27;MQ=55.29;NF=320;NR=314;PP=2965;QD=20;SC=ACATGCACACGTGAGCACATG;SbPval=0.53;Source=Platypus;TC=635;TCF=320;TCR=315;TR=634;WE=83983928;WS=83983910;set=Platypus	GT:AD:AF:DP	1/1:1,634:1.00:635
chr16	83984576	.	T	C	1802	.	AC=1;AF=0.500;AN=2;BRF=0.48;FR=0.5000;HP=2;HapScore=1;MGOF=20;MMLQ=23;MQ=41.98;NF=64;NR=34;PP=1802;QD=18.7425633933;SC=ACATACATACTGGCACACACG;SbPval=0.42;Source=Platypus;TC=147;TCF=99;TCR=48;TR=98;WE=83984587;WS=83984566;set=Platypus	GT:AD:AF:DP	1/0:49,98:0.67:147
chr16	83984578	.	GCA	G	2973	.	AC=2;AF=1.00;AN=2;BRF=0.48;FR=1.0000;HP=1;HapScore=1;MGOF=20;MMLQ=23;MQ=42.4;NF=45;NR=38;PP=2973;QD=20;SC=ATACATACTGGCACACACGTA;SbPval=0.55;Source=Platypus;TC=98;TCF=53;TCR=45;TR=83;WE=83984587;WS=83984566;set=Platypus	GT:AD:AF:DP	1/1:15,83:0.85:98
chr16	83984706	rs147293432	CCT	C	1009.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.501;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=3.822;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:411,69:0.14:480
chr16	83984776	rs28555129	A	C	13715.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr16	83984844	rs2244899	A	C	8145.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.408;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr16	83984850	rs2244898	C	G	7665.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.09;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr16	83986885	rs7203516	C	G	25440.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,567:1.00:567
chr16	83986888	rs7203864	G	A	25514.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,574:1.00:574
chr16	83991464	rs113116538	T	TTTTA	252.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,8:0.50:16
chr16	83992785	rs2665296	G	A	14065.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr16	83994569	rs2136662	G	T	5677.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr16	83999261	rs35132222	C	A	21537.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,783:1.00:783
chr16	84027225	.	CTGTG	CTGTGTGTG,C	664.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=84;set=Intersection	GT:AF:DP	0/1:0.43:21
chr16	84063034	rs62045928	G	A	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:11,29:0.72:40
chr16	84065710	rs907043	A	G	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.80;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr16	84065710	.	ATCCTCATCTG	GTCCTCATCTA,GTCCTCATCTG	409	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.08;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=39;MMLQ=23;MQ=60.0;NF=11,22;NR=16,33;PP=339,409;QD=14.5358472171;SC=CTGCCTCACCATCCTCATCTG;SbPval=0.53;Source=Platypus;TC=55;TCF=22;TCR=33;TR=27,55;WE=84065728;WS=84065700;set=Platypus	GT:AF:DP	0/1:0.49:55
chr16	84065720	rs907044	G	A	493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.669;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.98;ReadPosRankSum=0.102;SOR=0.458;set=HC	GT:AD:AF:DP	0/1:30,25:0.45:55
chr16	84065773	.	AGTTTTGTTGTT	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.12;FR=0.5000;HP=2;HapScore=1;MGOF=44;MMLQ=28;MQ=59.86;NF=4;NR=12;PP=2962;QD=20;SC=TCAGATGTAGAGTTTTGTTGT;SbPval=0.51;Source=Platypus;TC=22;TCF=5;TCR=17;TR=16;WE=84065791;WS=84065763;set=Platypus	GT:AD:AF:DP	1/0:6,16:0.73:22
chr16	84065774	.	GTT	G	762.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.296;QD=18.60;ReadPosRankSum=-3.212;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:19,22:0.54:41
chr16	84070238	rs8057543	C	A	823.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:18,38:0.68:56
chr16	84070500	rs1317524	C	G	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.883;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.05;ReadPosRankSum=-0.086;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:10,47:0.82:57
chr16	84070510	rs1876962	G	A	1833.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.275;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.96;ReadPosRankSum=0.568;SOR=1.151;set=HC	GT:AD:AF:DP	0/1:9,45:0.83:54
chr16	84070514	rs1876960	A	C	1791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.972;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.456;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.81;ReadPosRankSum=0.611;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:9,44:0.83:53
chr16	84075563	rs1105355	C	A	740.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:32,36:0.53:68
chr16	84088026	rs2280026	T	C	4062.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:70,186:0.73:256
chr16	84088267	rs17849045	G	A	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:23,69:0.75:92
chr16	84089536	rs11415464	T	TG	209.73	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr16	84094450	rs71920773	C	CT	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=0.48;ReadPosRankSum=-0.322;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:105,21:0.17:126
chr16	84100139	.	T	G	1512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.366;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=1.088;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:456,125:0.22:581
chr16	84100173	rs11550470	C	T	7982.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:185,364:0.66:549
chr16	84104478	rs1980011	C	T	222.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr16	84115483	rs3743631	G	A	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:89,153:0.63:242
chr16	84115610	rs3743633	G	A	1570.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr16	84121078	rs5818481	CA	C	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=-0.547;QD=1.49;ReadPosRankSum=-0.634;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:90,37:0.29:127
chr16	84121105	rs11312336	GA	G	983.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.406;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.170;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.708;QD=12.94;ReadPosRankSum=-1.489;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:24,52:0.68:76
chr16	84124359	rs17726447	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:48,31:0.39:79
chr16	84124604	rs11325729	CA	C	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=9.040;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.987;QD=5.52;ReadPosRankSum=1.624;SOR=1.874;set=HC	GT:AD:AF:DP	0/1:44,52:0.54:96
chr16	84125270	rs8050801	A	G	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:72,149:0.67:221
chr16	84132628	rs10690442	G	GAC	12395.73	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	84135453	rs1049884	A	T	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:82,52:0.39:134
chr16	84135493	rs907045	A	G	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr16	84135515	rs11550471	C	T	475.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr16	84205726	rs12926474	G	A	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr16	84217062	rs4782591	C	T	10881.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr16	84224805	rs8044351	G	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	84224967	rs8044695	G	A	3657.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr16	84225327	rs8049081	C	G	3930.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr16	84228199	rs11864937	G	T	1942.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:196,107:0.35:303
chr16	84228237	rs11646787	A	C	4924.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	84228279	rs35446963	G	A	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr16	84228305	rs11864916	C	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:37,17:0.31:54
chr16	84228612	rs35353940	CT	C	26477.73	.	AC=2;AF=1.00;AN=2;DB;DP=753;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr16	84228770	rs11149631	G	C	2624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=0.670;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:324,154:0.32:478
chr16	84229436	rs62049905	G	A	5058.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:119,229:0.66:348
chr16	84229559	rs2303238	T	C	13390.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr16	84229580	rs2303239	C	T	5060.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:157,222:0.59:379
chr16	84230067	.	GCAACCCCTTCGCT	G	2962	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=1;MGOF=9;MMLQ=23;MQ=60.56;NF=8;NR=9;PP=2962;QD=20;SC=TAATCCCAGCGCAACCCCTTC;SbPval=0.37;Source=Platypus;TC=65;TCF=26;TCR=39;TR=17;WE=84230087;WS=84230057;set=Platypus	GT:AD:AF:DP	1/0:48,17:0.26:65
chr16	84230082	.	AACCCCTTC	A	932.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.271;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=1.806;QD=12.95;ReadPosRankSum=-0.549;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr16	84230091	.	GCTCAA	G	931.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.878;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=3.340;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.724;QD=13.70;ReadPosRankSum=-0.928;SOR=0.380;set=HC	GT:AD:AF:DP	0/1:40,28:0.41:68
chr16	84230096	.	A	G	230	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=4;HapScore=1;MGOF=80;MMLQ=23;MQ=60.62;NF=13;NR=9;PP=230;QD=12.0350551158;SC=CCTTCGCTCAACCCCTTCCTA;SbPval=0.53;Source=Platypus;TC=61;TCF=37;TCR=24;TR=22;WE=84230104;WS=84230086;set=Platypus	GT:AD:AF:DP	0/1:39,22:0.36:61
chr16	84230376	rs2303242	T	C	2619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-1.934;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:288,153:0.35:441
chr16	84230500	rs2303243	A	C	1287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=5.23;ReadPosRankSum=-1.802;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:167,79:0.32:246
chr16	84255769	rs12920249	G	A	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.903;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:76,31:0.29:107
chr16	84256103	rs35649980	C	T	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:274,137:0.33:411
chr16	84270381	rs244811	G	A	8530.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr16	84328494	rs400345	C	T	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chr16	84328752	rs369797	G	T	6607.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.517;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr16	84328756	rs401782	G	C	6534.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.70;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr16	84328826	rs429725	A	G	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	84351789	rs4782606	G	A	1619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=1.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.73;ReadPosRankSum=-0.486;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:33,77:0.70:110
chr16	84351828	rs187372	G	A	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:106,52:0.33:158
chr16	84357925	rs244786	G	T	1844.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	84358121	rs244787	A	C	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.47;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	84360361	rs4782921	C	A	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:39,41:0.51:80
chr16	84360427	rs34519449	C	CG	2092.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:72,83:0.54:155
chr16	84360463	rs12933194	C	T	2328.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;MQ=60.05;set=Intersection	GT:AD:AF:DP	0/1:101,113:0.53:214
chr16	84360533	rs12933084	A	G	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:89,101:0.53:190
chr16	84438512	rs11149650	G	A	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	84441989	rs9935544	C	T	7117.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:198,331:0.63:529
chr16	84444113	rs2291006	C	T	624.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr16	84444349	rs247818	A	C	7229.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr16	84449024	rs3743649	G	A	5428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=1.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=-0.661;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:75,137:0.65:212
chr16	84449032	rs3743650	G	T	5597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.22;ReadPosRankSum=0.021;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:79,143:0.64:222
chr16	84449206	rs3826145	T	C	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:52,67:0.56:119
chr16	84455961	rs2288573	A	G	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:53,92:0.63:145
chr16	84456627	rs77672821	C	G	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr16	84456642	rs247814	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr16	84456705	rs185063	C	T	3586.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	84459152	rs148267103	C	T	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr16	84459512	rs1887	G	C	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:5,19:0.79:24
chr16	84472972	rs247905	G	A	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:85,55:0.39:140
chr16	84473004	rs3085208	C	CTT	3193.73	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr16	84473137	rs247904	G	C	4135.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr16	84473192	rs931077	A	G	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.496;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.02;ReadPosRankSum=-0.614;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:33,49:0.60:82
chr16	84473195	rs247903	T	A	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.61;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	84476200	rs247897	A	T	7896.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:1,292:1.00:293
chr16	84481995	rs247891	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	84485573	rs247885	C	A	7736.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr16	84485749	rs12149888	C	T	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:148,83:0.36:231
chr16	84486867	rs2435172	A	G	7099.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	84487039	rs60133623	C	G	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr16	84492683	rs693552	A	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:27,53:0.66:80
chr16	84493032	rs3743654	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:165,92:0.36:257
chr16	84493080	rs3743655	A	G	4072.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:116,190:0.62:306
chr16	84493144	rs410388	C	G	5346.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	84493216	rs377261	T	C	688.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:25,35:0.58:60
chr16	84493927	rs35858301	G	A	504.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:23,23:0.50:46
chr16	84493954	.	G	GA	959.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:45,32:0.42:77
chr16	84494020	rs393515	G	T	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr16	84494252	rs72806651	C	T	5322.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:133,239:0.64:372
chr16	84494275	rs2241640	C	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:250,133:0.35:383
chr16	84494450	rs381467	G	A	1332.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,57:0.51:112
chr16	84495224	rs369750	A	G	1894.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:38,87:0.70:125
chr16	84495761	rs34205686	G	C	442.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:60,28:0.32:88
chr16	84495770	rs2241639	G	A	1404.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr16	84497186	rs2241634	C	T	2230.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:62,98:0.61:160
chr16	84513463	rs899250	T	G	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:13,10:0.43:23
chr16	84514341	rs444170	A	G	4039.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:81,183:0.69:264
chr16	84516204	rs62640938	G	A	4868.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:133,221:0.62:354
chr16	84516309	rs433293	G	A	9771.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr16	84520173	rs62048674	C	T	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:31,11:0.26:42
chr16	84520223	rs431629	A	T	2119.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:37,95:0.72:132
chr16	84520325	rs431389	T	C	5004.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:99,224:0.69:323
chr16	84520396	rs422145	A	G	7039.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr16	84520537	rs431818	T	C	6482.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr16	84520780	rs378384	G	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	84522867	rs422918	C	A	1843.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:42,74:0.64:116
chr16	84522897	rs436278	G	C	2700.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:60,112:0.65:172
chr16	84528235	rs62050761	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr16	84528317	rs2435171	G	C	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	84531307	rs442288	G	C	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	84531780	rs501782	T	C	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr16	84600314	rs41291692	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.266;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.294;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr16	84690467	rs72797510	C	T	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr16	84691044	rs3751762	C	T	26727.77	.	AC=2;AF=1.00;AN=2;DB;DP=978;set=Intersection	GT:AD:AF:DP	1/1:0,975:1.00:975
chr16	84691433	rs72797514	C	T	2424.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:79,110:0.58:189
chr16	84693675	rs2303230	C	T	328.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr16	84774120	rs4510001	T	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:36,22:0.38:58
chr16	84774173	rs74032675	A	G	158.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:11,8:0.42:19
chr16	84778685	rs1862792	A	G	3932.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:374,222:0.37:596
chr16	84792291	rs41327444	A	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:191,94:0.33:285
chr16	84792428	rs7202832	C	T	5405.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	84797637	rs3213810	T	A	8536.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:1,326:1.00:327
chr16	84797967	rs75396687	G	T	1693.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:159,88:0.36:247
chr16	84808824	rs774298	C	G	11380.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr16	84808969	rs2303232	G	C	5310.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr16	84808984	rs774300	T	C	4010.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	84872051	rs1546124	G	C	1295.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:41,55:0.57:96
chr16	84882911	rs4783086	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:32,32:0.50:64
chr16	84882974	rs4783087	C	A	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:43,82:0.66:125
chr16	84883102	rs8061351	C	T	2741.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:73,124:0.63:197
chr16	84883195	rs140532417	A	ATTG	1622.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr16	84884072	rs4782673	T	G	2563.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:79,125:0.61:204
chr16	84884116	rs4783090	A	G	4809.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:130,219:0.63:349
chr16	84888541	rs2646127	T	C	3207.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:98,153:0.61:251
chr16	84888597	rs2646126	C	G	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr16	84900472	rs72799566	T	C	3350.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;MQ=59.95;set=Intersection	GT:AD:AF:DP	0/1:208,172:0.45:380
chr16	84902353	rs4782676	G	A	4252.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:100,196:0.66:296
chr16	84902483	rs72799568	A	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:221,102:0.32:323
chr16	84906098	rs721005	C	G	2399.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.672;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.50;ReadPosRankSum=-0.822;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:75,117:0.61:192
chr16	84907499	rs11298434	GT	G	1129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.74;ReadPosRankSum=0.225;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:48,98:0.67:146
chr16	84907503	.	T	G	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.146;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=6.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-1.128;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:100,57:0.36:157
chr16	84907617	rs79287004	G	T	2498.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:221,142:0.39:363
chr16	84907670	rs2934486	G	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:82,131:0.62:213
chr16	84922859	rs767050	C	T	3494.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:80,152:0.66:232
chr16	84940479	rs1874008	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	85009970	rs7195377	A	G	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.065;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.637;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=2.470;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:125,45:0.26:170
chr16	85011480	rs8045409	T	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr16	85011622	rs8044638	G	A	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:90,48:0.35:138
chr16	85023855	rs931713	C	T	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:188,128:0.41:316
chr16	85105348	.	GT	G	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.779;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=4.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-0.255;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr16	85105371	rs34909211	C	CT	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.954;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr16	85105554	rs8058770	A	C	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=1.314;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:85,37:0.30:122
chr16	85116312	rs2291964	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:21,16:0.43:37
chr16	85120364	rs11410626	G	GA	1873.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=6.626;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.813;QD=9.66;ReadPosRankSum=1.101;SOR=1.161;set=HC	GT:AD:AF:DP	0/1:128,66:0.34:194
chr16	85120609	rs2291962	A	G	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:94,58:0.38:152
chr16	85121733	rs3751753	C	A	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.117;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr16	85135968	rs35852446	G	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr16	85139173	rs8050910	G	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:95,61:0.39:156
chr16	85141789	rs76073304	G	A	1569.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:22,54:0.71:76
chr16	85688163	rs113068263	C	CT	670.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,22:0.73:30
chr16	85690338	rs4843185	G	A	476.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr16	85690878	rs34805959	C	CA	10548.73	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:149,332:0.69:481
chr16	85691294	rs7404958	A	G	2153.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	85696499	rs145209523	G	T	1235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=3.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-0.277;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:114,70:0.38:184
chr16	85696615	rs146498039	C	T	6063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=0.000;DB;DP=427;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=2.161;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:141,285:0.67:426
chr16	85699527	rs7195186	A	G	364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.901;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.68;ReadPosRankSum=-1.791;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr16	85704584	rs2303202	A	G	272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.938;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr16	85706047	rs9940601	A	C	5210.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr16	85711860	rs1053328	C	T	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.210;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=1.758;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr16	85712105	rs3815795	C	T	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:13,19:0.59:32
chr16	85720945	rs3815796	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:98,67:0.41:165
chr16	85720955	rs3815797	G	A	2778.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:85,123:0.59:208
chr16	85721297	rs9930592	T	A	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr16	85722355	rs2303204	GC	TT	3266.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	0/1:34,82:0.71:116
chr16	85722560	rs58171120	C	G	2974.77	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:60,132:0.69:192
chr16	85743732	rs2305357	C	G	333.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr16	85768717	rs1862733	C	T	3324.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:112,150:0.57:262
chr16	85775064	rs388855	A	G	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	85775097	rs72803098	G	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:28,55:0.66:83
chr16	85775175	rs446444	G	A	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr16	85813231	rs8587	A	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	85813526	rs301163	G	A	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr16	85813880	rs301164	T	C	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	85813963	rs301165	C	T	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr16	85814899	rs3081701	T	TAGTC	19774.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr16	85814995	rs301166	A	G	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:1,293:1.00:294
chr16	85815074	rs301167	C	T	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	85838093	rs2599088	G	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	85838115	rs2733963	G	A	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	85838166	rs2599089	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr16	85838195	rs2733964	A	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr16	85838503	rs2599090	T	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr16	85838532	rs2733965	A	G	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr16	85838653	rs2599091	T	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	85838804	rs11419687	G	GA	2343.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	85839140	rs2599092	T	C	1645.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr16	85839186	rs2733966	C	T	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr16	85839211	rs2075532	G	C	4808.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr16	85839543	rs2641797	C	G	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr16	85839977	rs2075553	G	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr16	85840035	rs5818557	CA	C	8134.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr16	85945076	rs2292980	T	C	2096.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.114;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:229,122:0.35:351
chr16	85953682	rs16940005	G	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:196,100:0.34:296
chr16	86369306	rs3828516	C	A	605.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr16	86565826	rs3751803	C	G	8115.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr16	86574726	rs1025057	C	G	8129.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr16	86574818	rs17192954	C	G	9492.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.223;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.52;ReadPosRankSum=-0.140;SOR=0.253;set=HC	GT:AD:AF:DP	1/1:1,371:1.00:372
chr16	86574897	rs35698660	T	TA	681.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=7.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.82;ReadPosRankSum=0.936;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:46,54:0.54:100
chr16	86575460	rs3213418	C	G	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr16	86585905	rs8046613	C	A	4933.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr16	86588655	rs2354022	G	C	19746.77	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:0,741:1.00:741
chr16	87349333	rs6540037	A	G	321.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=2.502;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=-2.378;SOR=0.347;set=HC	GT:AD:AF:DP	0/1:41,19:0.32:60
chr16	87349489	rs7193801	A	G	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:82,40:0.33:122
chr16	87349529	rs7198660	T	C	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr16	87349541	rs147122963	C	T	925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.790;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.23;ReadPosRankSum=0.039;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:27,43:0.61:70
chr16	87350773	rs3748393	C	A	3195.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	0/1:219,163:0.43:382
chr16	87350997	rs4843592	A	G	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:50,40:0.44:90
chr16	87376605	rs2303763	C	T	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr16	87376623	rs4843237	C	G	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:1,198:0.99:199
chr16	87377455	rs2303764	G	C	2848.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	87416903	rs8058715	A	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr16	87426028	rs8043569	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr16	87426256	rs72628299	A	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	87436382	rs8044820	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr16	87436720	rs1054521	G	T	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr16	87436764	rs1054528	A	G	4115.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,157:0.99:158
chr16	87445839	rs3748400	C	T	4838.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr16	87446053	rs2042395	G	A	7277.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	87452546	rs4240794	C	A	6290.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:1,232:1.00:233
chr16	87452584	rs8046992	C	T	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr16	87637893	rs71156237	C	CCTGCTGCTG,CCTGCTGCTGCTG	5267.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=267;set=Intersection	GT:AF:DP	1/2:0.41,0.57:169
chr16	87638576	rs145223680	G	A	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.573;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=2.761;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.081;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:85,31:0.27:116
chr16	87677800	rs139592549	C	T	4377.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:77,180:0.70:257
chr16	87723838	rs34767155	T	C	3775.77	.	AC=1;AF=0.500;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	0/1:271,192:0.41:463
chr16	87729256	rs72810189	T	C	1893.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:289,117:0.29:406
chr16	87729334	rs34111279	C	CA	17559.73	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr16	87735527	rs7199037	G	A	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:210,118:0.36:328
chr16	87741662	rs2290019	C	A	1581.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:170,86:0.34:256
chr16	87742092	rs2290018	G	A	5457.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:134,254:0.65:388
chr16	87742129	rs2290017	G	A	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:163,70:0.30:233
chr16	87744756	rs60382083	A	C	2510.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:68,106:0.61:174
chr16	87747994	rs4843258	G	T	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	87748198	rs2081981	G	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.518;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.54;ReadPosRankSum=0.585;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:115,64:0.36:179
chr16	87748289	rs12928911	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr16	87748315	rs12928928	G	A	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr16	87760324	.	T	C	384	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=23;MQ=57.47;NF=12;NR=6;PP=384;QD=23.2650673637;SC=GCGCCTCGCCTGTTTCCCGGT;SbPval=0.3;Source=Platypus;TC=32;TCF=24;TCR=8;TR=18;WE=87760345;WS=87760314;set=Platypus	GT:AD:AF:DP	1/0:14,18:0.56:32
chr16	87760337	.	A	C	989	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=2;HapScore=2;MGOF=16;MMLQ=23;MQ=58.76;NF=29;NR=10;PP=989;QD=26.2505439115;SC=TTCCCGGTCCAACGCCTTGCC;SbPval=0.54;Source=Platypus;TC=39;TCF=29;TCR=10;TR=39;WE=87760345;WS=87760314;set=Platypus	GT:AD:AF:DP	1/1:0,39:1.00:39
chr16	87764403	rs34481270	C	G	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.57;SOR=3.076;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	87764403	.	CAA	GAA,GAG	624	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.04;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=9,4;NR=48,27;PP=308,624;QD=6.01353004469;SC=TCTGATCTATCAACTACCAAA;SbPval=0.54;Source=Platypus;TC=57;TCF=9;TCR=48;TR=57,31;WE=87764413;WS=87764393;set=Platypus	GT:AF:DP	0/1:1.00:57
chr16	87764405	rs34457954	A	G	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.246;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.72;ReadPosRankSum=0.499;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:21,33:0.61:54
chr16	87782182	rs56031151	A	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.85;ReadPosRankSum=-0.755;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:37,24:0.39:61
chr16	87782396	rs34779002	C	A	975.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:100,56:0.36:156
chr16	87788756	rs2303770	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	87788836	rs17699859	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:58,35:0.38:93
chr16	87788864	rs2303771	G	A	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr16	87795580	rs2303772	G	C	1181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-2.201;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:128,68:0.35:196
chr16	87798732	rs4843266	G	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	87871714	rs2287121	T	G	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr16	87873247	rs750950	A	C	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr16	87902684	rs17853938	G	T	302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.583;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-1.393;QD=3.40;ReadPosRankSum=-1.238;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:70,19:0.21:89
chr16	87903082	rs3829509	G	C	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr16	87921654	rs58800453	G	A	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,28:0.53:53
chr16	87921846	rs72816311	T	A	3165.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:80,146:0.65:226
chr16	87921935	rs60779524	T	C	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chr16	87935958	rs5818651	C	CA	3058.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=7.198;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-1.444;QD=6.68;ReadPosRankSum=1.409;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:239,219:0.48:458
chr16	87938308	rs116928297	C	T	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr16	87938398	rs7186698	G	A	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:52,120:0.70:172
chr16	87960560	rs12922226	A	T	338.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:48,19:0.28:67
chr16	87969777	.	TA	T	266.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.646;QD=2.13;ReadPosRankSum=0.547;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:80,45:0.36:125
chr16	88012150	rs8052854	T	G	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,18:0.78:23
chr16	88014554	rs8052770	G	A	959.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:33,38:0.54:71
chr16	88014859	rs140742454	A	G	1257.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr16	88017809	rs3815820	C	T	2756.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:73,123:0.63:196
chr16	88039979	rs8055024	G	C	162.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:39,11:0.22:50
chr16	88052161	rs7499814	C	A	1075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.043;QD=5.27;ReadPosRankSum=-0.022;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:138,66:0.32:204
chr16	88061150	rs74740586	C	T	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:90,87:0.49:177
chr16	88066655	rs11641367	A	G	5298.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.78;QD=45.68;SOR=1.510;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr16	88066659	rs11646301	C	A	5347.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.85;QD=43.83;SOR=1.407;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	88105053	rs11117358	T	A	1761.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.254;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=0.068;SOR=0.829;set=HC	GT:AD:AF:DP	0/1:306,115:0.27:421
chr16	88123598	rs8063486	C	G	5669.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr16	88123697	rs8063654	C	A	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr16	88124525	rs28650772	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:64,27:0.30:91
chr16	88134218	rs115962528	C	G	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr16	88134285	rs11860533	A	G	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	88494947	rs11648572	T	C	26647.77	.	AC=2;AF=1.00;AN=2;DB;DP=1040;set=Intersection	GT:AD:AF:DP	1/1:2,1011:1.00:1013
chr16	88494976	rs11640794	A	C	31417.77	.	AC=2;AF=1.00;AN=2;DB;DP=1175;set=Intersection	GT:AD:AF:DP	1/1:1,1171:1.00:1172
chr16	88495407	rs7199961	G	C	13353.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr16	88495654	rs12927001	A	G	36709.77	.	AC=2;AF=1.00;AN=2;DB;DP=1398;set=Intersection	GT:AD:AF:DP	1/1:0,1394:1.00:1394
chr16	88496008	rs12918876	T	C	19430.77	.	AC=2;AF=1.00;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr16	88497031	rs9924504	T	C	9782.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr16	88497400	rs9938800	G	A	7081.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr16	88497446	rs7197071	A	G	12051.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr16	88498221	rs4782300	C	T	29163.77	.	AC=2;AF=1.00;AN=2;DB;DP=1050;set=Intersection	GT:AD:AF:DP	1/1:0,1050:1.00:1050
chr16	88498297	rs12445417	T	G	33725.77	.	AC=2;AF=1.00;AN=2;DB;DP=1278;set=Intersection	GT:AD:AF:DP	1/1:0,1272:1.00:1272
chr16	88499539	rs9931465	C	G	13352.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr16	88501034	rs12598474	G	C	6777.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:169,300:0.64:469
chr16	88501971	rs3812956	T	A	2379.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:95,104:0.52:199
chr16	88502482	rs3812953	C	T	1890.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:195,109:0.36:304
chr16	88502505	rs1983014	A	G	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr16	88504850	rs1105066	G	C	8106.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:159,343:0.68:502
chr16	88504868	rs904783	A	G	15070.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,575:1.00:575
chr16	88505635	rs4782301	A	G	3747.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=0.000;DB;DP=1085;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=0.694;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:821,261:0.24:1082
chr16	88505734	rs4782362	C	T	9475.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr16	88505748	rs45504291	G	A	4985.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:67,197:0.75:264
chr16	88535242	rs55823018	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chr16	88535341	rs56292801	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:91,52:0.36:143
chr16	88535407	rs35613341	C	G	2674.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:242,139:0.36:381
chr16	88535591	rs36024491	C	T	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:51,18:0.26:69
chr16	88552370	rs3751673	A	G	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:288,120:0.29:408
chr16	88555301	rs34251187	C	A	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	88593209	rs199766456	CCT	C	187.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.258;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.401;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr16	88593210	rs35678431	CT	C	921.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.800;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.40;ReadPosRankSum=-0.269;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:22,42:0.66:64
chr16	88598489	rs45611335	C	T	10728.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	0/1:325,501:0.61:826
chr16	88599695	rs67712719	GGA	G	10260.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	88599697	.	AG	CC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=3;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=71;NR=94;PP=2947;QD=20;SC=GCCAGAGCGGAGCCTCTGGCC;SbPval=0.53;Source=Platypus;TC=176;TCF=76;TCR=100;TR=165;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:11,165:0.94:176
chr16	88599699	.	CCTCTGG	C	2965	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=12;NR=97;PP=2965;QD=20;SC=CAGAGCGGAGCCTCTGGCCCA;SbPval=0.52;Source=Platypus;TC=109;TCF=12;TCR=97;TR=109;WE=88599712;WS=88599687;set=Platypus	GT:AD:AF:DP	1/1:0,109:1.00:109
chr16	88599700	rs67322929	CT	C	10259.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.095;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr16	88599702	rs67873604	CTGG	C	10168.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr16	88600079	rs13335396	C	G	9794.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.720;set=HC	GT:AD:AF:DP	1/1:0,379:1.00:379
chr16	88620148	rs11647546	C	G	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr16	88620195	rs2879897	T	G	283.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=1.005;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:54,20:0.27:74
chr16	88643457	rs936621	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr16	88644005	rs899728	A	G	2918.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr16	88652794	rs12447794	C	A	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chr16	88664758	rs3887592	T	C	4581.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr16	88666035	rs6500481	G	A	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	88675177	rs9932685	A	G	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	88675194	rs9932692	A	G	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr16	88675529	rs9930974	C	T	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr16	88695300	rs4782387	C	T	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr16	88695332	rs4782306	G	C	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=2.572;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr16	88695338	rs4782388	C	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=2.560;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr16	88697487	rs2291160	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	88705804	rs2254073	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:35,33:0.49:68
chr16	88712712	.	T	TGCAGACCCAGGGGACGTGTGCGGACCGGGGCTGCAAAGTCTCAGCACAAG	3425.73	.	AC=2;AF=1.00;AN=2;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.78;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr16	88712731	.	C	T	1481	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=2;HapScore=4;MGOF=21;MMLQ=23;MQ=60.0;NF=27;NR=23;PP=1481;QD=30.3154242509;SC=AGGGGACGTGCGCGGACCGGG;SbPval=0.4;Source=Platypus;TC=80;TCF=46;TCR=34;TR=50;WE=88712741;WS=88712721;set=Platypus	GT:AD:AF:DP	0/1:30,50:0.62:80
chr16	88712733	rs12926425	C	T	2077.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr16	88712767	rs12933505	A	G	2496.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr16	88712780	rs12933512	A	C	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=2.537;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	88712780	.	ACA	CCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=2;HapScore=1;MGOF=10;MMLQ=23;MQ=60.0;NF=54;NR=18;PP=2947;QD=20;SC=CTTGATGTGGACACTAGCGGC;SbPval=0.7;Source=Platypus;TC=77;TCF=55;TCR=22;TR=72;WE=88712790;WS=88712757;set=Platypus	GT:AD:AF:DP	1/1:5,72:0.94:77
chr16	88712782	rs12709103	A	G	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.31;SOR=2.537;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	88713236	rs4673	A	G	17967.77	.	AC=2;AF=1.00;AN=2;DB;DP=672;set=Intersection	GT:AD:AF:DP	1/1:0,671:1.00:671
chr16	88713473	rs4782308	G	A	9961.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr16	88713501	rs4782393	A	G	14282.77	.	AC=2;AF=1.00;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr16	88714559	rs2306422	C	T	7319.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr16	88716534	rs3812948	A	G	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr16	88717074	rs3794624	G	A	8399.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:222,389:0.64:611
chr16	88717386	rs8053867	T	C	12272.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:2,463:1.00:465
chr16	88718865	rs8854	C	T	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:45,27:0.38:72
chr16	88719877	rs12926212	C	G	2612.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:71,118:0.62:189
chr16	88719980	rs8046018	G	T	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:26,23:0.47:49
chr16	88721012	rs12935454	G	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr16	88721538	rs4782309	C	T	318.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr16	88723538	rs9302778	TGG	T	702.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:19,19:0.50:38
chr16	88723629	rs6500486	C	T	883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.530;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=2.242;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.45;ReadPosRankSum=-0.215;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:87,50:0.36:137
chr16	88724347	rs2279258	G	T	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:80,157:0.66:237
chr16	88729008	rs7205116	G	A	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:103,45:0.30:148
chr16	88729573	rs3794625	C	T	12118.77	.	AC=1;AF=0.500;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	0/1:305,548:0.64:853
chr16	88729670	rs7193657	G	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:130,70:0.35:200
chr16	88752693	rs11076698	T	G	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:55,105:0.66:160
chr16	88762943	rs1132579	A	T	1686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=2.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=2.515;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:55,100:0.65:155
chr16	88763151	rs13556	G	A	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr16	88766168	rs55780854	C	T	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:44,66:0.60:110
chr16	88767769	rs2306049	G	C	2890.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:46,124:0.73:170
chr16	88767861	rs2306048	C	G	620.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr16	88772491	rs7194105	A	G	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr16	88772746	rs112070238	C	T	1267.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=3.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.65;ReadPosRankSum=-1.330;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:28,53:0.65:81
chr16	88776141	rs4598894	G	A	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.117;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.08;ReadPosRankSum=-1.709;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:22,48:0.69:70
chr16	88776148	rs4377140	C	T	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.60;ReadPosRankSum=-2.011;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:23,52:0.69:75
chr16	88776297	rs4390574	T	C	7024.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:166,328:0.66:494
chr16	88776499	rs61744010	G	T	2574.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:65,107:0.62:172
chr16	88777995	rs11076704	C	T	3006.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:97,138:0.59:235
chr16	88778133	rs2879902	C	A	2147.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:85,104:0.55:189
chr16	88778427	rs11361741	GC	G	5692.73	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:84,166:0.66:250
chr16	88778831	rs7201610	C	T	1413.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:45,61:0.58:106
chr16	88779371	.	G	GC	664	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=5;HapScore=2;MGOF=10;MMLQ=26;MQ=46.7;NF=0;NR=18;PP=664;QD=38.3333333333;SC=GCCCCTGAGAGCCCCCTTCCC;SbPval=1.0;Source=Platypus;TC=30;TCF=2;TCR=28;TR=18;WE=88779379;WS=88779361;set=Platypus	GT:AD:AF:DP	1/0:12,18:0.60:30
chr16	88779739	rs11549837	A	G	3614.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:142,183:0.56:325
chr16	88779865	rs4782320	G	A	3551.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:87,156:0.64:243
chr16	88779952	rs74757912	C	CCT	2198.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:29,57:0.66:86
chr16	88780175	rs4782321	G	A	12405.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:251,575:0.70:826
chr16	88780472	rs7205626	T	C	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:69,126:0.65:195
chr16	88780518	rs3826076	A	G	5387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.524;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=13.44;ReadPosRankSum=1.010;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:145,256:0.64:401
chr16	88780635	rs149847195	G	GGTGT	11299.73	.	AC=1;AF=0.500;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	0/1:155,288:0.65:443
chr16	88780680	rs145565756	CTGTGCGCGGG	C	5459.73	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:75,143:0.66:218
chr16	88780923	rs8050715	C	G	7006.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:179,306:0.63:485
chr16	88781073	rs11549835	G	A	13243.77	.	AC=1;AF=0.500;AN=2;DB;DP=932;set=Intersection	GT:AD:AF:DP	0/1:330,602:0.65:932
chr16	88781125	rs8043637	T	C	7234.77	.	AC=1;AF=0.500;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	0/1:199,348:0.64:547
chr16	88781419	rs2306046	A	G	3509.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:91,164:0.64:255
chr16	88781791	rs1061247	A	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr16	88782676	rs2290902	A	G	4213.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:82,178:0.68:260
chr16	88783374	rs8044367	A	G	5515.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:137,259:0.65:396
chr16	88783414	rs79934624	G	A	9238.77	.	AC=1;AF=0.500;AN=2;DB;DP=620;set=Intersection	GT:AD:AF:DP	0/1:210,409:0.66:619
chr16	88783449	rs8057031	C	G	11520.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:262,518:0.66:780
chr16	88783521	rs6500491	T	C	12787.77	.	AC=1;AF=0.500;AN=2;DB;DP=916;set=Intersection	GT:AD:AF:DP	0/1:305,605:0.66:910
chr16	88783738	rs4782432	A	G	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:19,48:0.72:67
chr16	88785072	rs4620939	G	C	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr16	88785126	rs4520817	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,26:0.67:39
chr16	88785206	rs79311053	C	T	1437.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,65:0.68:96
chr16	88785242	rs113385327	A	C	1325.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr16	88785286	rs142864864	TTATTTTTTTG	T	2062.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:28,52:0.65:80
chr16	88786967	rs4401037	C	T	4075.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:122,180:0.60:302
chr16	88787704	rs8043924	G	C	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:139,217:0.61:356
chr16	88788477	rs9935872	A	G	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr16	88788903	rs4238687	T	G	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:103,158:0.61:261
chr16	88788934	rs4238686	A	G	2656.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:85,114:0.57:199
chr16	88791754	rs116950354	G	A	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr16	88792047	rs4782430	A	G	2194.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:56,104:0.65:160
chr16	88792097	rs4782429	A	G	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr16	88793090	rs4516218	A	G	5998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=75.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.73;ReadPosRankSum=-0.701;SOR=2.981;set=HC	GT:AD:AF:DP	0/1:142,162:0.53:304
chr16	88793103	rs4424896	C	G	5950.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=85.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.71;ReadPosRankSum=-1.412;SOR=3.099;set=HC	GT:AD:AF:DP	0/1:155,163:0.51:318
chr16	88793813	rs8057198	T	C	393.94	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:2,15:0.88:17
chr16	88793858	rs2242170	C	T	1304.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr16	88793872	rs113907912	T	C	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.01;ReadPosRankSum=-0.030;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:15,39:0.72:54
chr16	88798398	rs113010486	A	G	228.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.613;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.44;ReadPosRankSum=-1.312;SOR=1.508;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr16	88800176	rs11649478	G	T	2282.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr16	88800372	.	GTCC	G	1097	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=1;HapScore=1;MGOF=15;MMLQ=28;MQ=60.9;NF=32;NR=63;PP=1097;QD=11.6315789474;SC=CGTCCCTGGAGTCCTCCTCCT;SbPval=0.55;Source=Platypus;TC=151;TCF=52;TCR=99;TR=95;WE=88800382;WS=88800362;set=Platypus	GT:AD:AF:DP	0/1:56,95:0.63:151
chr16	88800395	rs144777557	CCTG	C	2679.73	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:122,125:0.51:247
chr16	88800477	rs77376965	G	A	5972.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:154,268:0.64:422
chr16	88800785	rs35265318	C	T	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:71,69:0.49:140
chr16	88800814	rs35353288	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:79,101:0.56:180
chr16	88800913	rs34908386	C	T	2946.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:71,137:0.66:208
chr16	88802511	rs36100417	G	T	759.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr16	88802573	rs78905828	G	A	2910.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:68,121:0.64:189
chr16	88802748	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=92;NR=112;PP=2962;QD=20;SC=GGCTGCGCACCGTCCAGATGA;SbPval=0.53;Source=Platypus;TC=325;TCF=146;TCR=179;TR=204;WE=88802756;WS=88802738;set=Platypus	GT:AD:AF:DP	0/1:121,204:0.63:325
chr16	88802830	.	A	G	1079	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=4;HapScore=1;MGOF=7;MMLQ=29;MQ=59.41;NF=9;NR=42;PP=1079;QD=21.8386512264;SC=CGCGGCAGAGAGGGCTGCACA;SbPval=0.57;Source=Platypus;TC=83;TCF=15;TCR=68;TR=51;WE=88802838;WS=88802820;set=Platypus	GT:AD:AF:DP	0/1:32,51:0.61:83
chr16	88803195	rs4782410	T	C	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr16	88803925	rs66881450	G	GC	968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=9.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.50;ReadPosRankSum=0.478;SOR=1.143;set=HC	GT:AD:AF:DP	0/1:70,44:0.39:114
chr16	88803934	rs11643304	A	C	1915.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:49,86:0.64:135
chr16	88803982	rs6500493	C	G	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr16	88804734	rs7184427	A	G	4572.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:141,207:0.59:348
chr16	88807896	rs7404939	G	A	1373.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:157,79:0.33:236
chr16	88808111	rs11076707	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:20,35:0.64:55
chr16	88808311	rs12924342	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:18,20:0.53:38
chr16	88808743	rs6500495	A	G	2644.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:72,114:0.61:186
chr16	88808862	rs7201439	C	T	1827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.11;ReadPosRankSum=-0.088;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:21,49:0.70:70
chr16	88808872	rs11644443	G	A	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.10;ReadPosRankSum=0.654;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:18,41:0.69:59
chr16	88808918	rs11648555	C	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr16	88809368	rs28525359	G	T	6043.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:227,282:0.55:509
chr16	88809434	rs9925084	A	G	8662.77	.	AC=1;AF=0.500;AN=2;DB;DP=828;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:392,434:0.53:826
chr16	88809480	rs9925171	A	G	8580.77	.	AC=1;AF=0.500;AN=2;DB;DP=817;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:394,420:0.52:814
chr16	88809686	rs9927855	T	C	10850.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:302,491:0.62:793
chr16	88809773	rs8048714	G	C	8892.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:214,395:0.65:609
chr16	88810129	rs8053135	A	G	3722.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:58,157:0.73:215
chr16	88815647	rs112962992	C	CA	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.478;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.594;QD=1.34;ReadPosRankSum=-1.074;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:141,45:0.24:186
chr16	88870099	rs865103	T	C	3999.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:91,170:0.65:261
chr16	88872145	rs507329	T	C	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	88872229	rs480727	A	G	2595.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:108,122:0.53:230
chr16	88872511	rs510862	T	C	13291.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr16	88874632	rs572275	C	G	7845.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:174,358:0.67:532
chr16	88876666	rs8191489	C	G	5365.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:114,233:0.67:347
chr16	88878048	rs8191473	G	A	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:93,50:0.35:143
chr16	88880811	rs11076715	C	T	223.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr16	88880965	rs11076716	C	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr16	88884466	rs2303271	C	T	6164.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:116,280:0.71:396
chr16	88893013	rs3859024	C	G	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:26,74:0.74:100
chr16	88901850	rs11076721	T	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:16,50:0.76:66
chr16	88902183	rs1064315	G	A	3051.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:91,140:0.61:231
chr16	88902276	rs12934499	C	T	2338.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:55,107:0.66:162
chr16	88902518	rs2269333	A	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr16	88902780	rs12444543	A	G	3301.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:69,148:0.68:217
chr16	88902820	rs11076722	T	C	3362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.48;ReadPosRankSum=-0.373;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:45,87:0.66:132
chr16	88902823	rs11076723	G	T	3322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=-0.009;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:44,83:0.65:127
chr16	88907283	rs8054994	G	T	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:59,113:0.66:172
chr16	88909028	rs71395332	C	T	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:39,78:0.67:117
chr16	88909095	rs35137494	G	A	4571.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:108,206:0.66:314
chr16	88921493	rs12932588	C	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr16	88921634	rs34150867	C	G	2882.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:73,128:0.64:201
chr16	88922989	rs113289677	A	AC	579.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr16	88923829	rs72813576	T	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,23:0.31:75
chr16	88924982	rs72813578	T	C	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:308,152:0.33:460
chr16	88927221	rs3826061	T	C	1317.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr16	88927249	rs149363563	C	G	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:57,96:0.63:153
chr16	88931363	rs141563331	A	AGGGAG	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.435;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=5.085;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.59;ReadPosRankSum=0.225;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:70,38:0.35:108
chr16	88931914	rs889753	T	C	1204.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:34,55:0.62:89
chr16	88946955	rs564705	A	G	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	88948971	.	GGCATGGCTGTGGGCGTGGCTGTGTGT	G	858.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr16	88949000	rs4782504	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,12:0.32:37
chr16	89017569	rs34847212	G	C	2095.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:201,112:0.36:313
chr16	89119156	.	C	CT	285.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DP=183;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.838;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr16	89160158	rs76688594	G	C	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr16	89160329	rs145228567	C	G	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.900;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr16	89160452	rs9938075	A	G	154.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr16	89167066	rs57558972	C	G	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr16	89167075	rs11273288	C	CCCCAGGAGGCTCCCGGGAG	4310.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr16	89167094	rs7188200	T	C	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr16	89167140	rs7201122	G	C	8224.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr16	89167395	rs6500526	C	T	17931.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,403:1.00:403
chr16	89167404	rs7193255	T	C	18263.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,424:1.00:424
chr16	89167431	rs6500527	G	C	11779.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr16	89167443	rs6500528	T	C	11606.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr16	89167458	rs6500529	C	A	12284.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr16	89167792	rs8060043	C	T	3416.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr16	89168981	rs4782457	T	C	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr16	89169205	rs4782456	C	G	9310.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr16	89169219	rs10578141	CCT	C	8567.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	89169312	rs4782455	T	C	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	89178457	.	G	GTGCCTGCTCATCTTCCCACCGAGTGCTTCCTTTCCTCCGCCGCCGTGGGTCTC	2535.73	.	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=110.25;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr16	89178773	rs4782449	A	G	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr16	89180664	rs9940965	C	G	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr16	89180883	rs3743979	G	A	4220.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr16	89180935	rs3743980	G	T	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr16	89187378	rs3743983	G	C	3570.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr16	89188672	rs8058601	C	A	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr16	89212200	rs4302032	A	G	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr16	89238190	rs12927793	G	A	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:124,83:0.40:207
chr16	89254412	rs139889439	AGGGTGGGAGGGGAGGGT	A	245.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr16	89262431	rs2287353	G	A	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr16	89267769	rs34679577	GC	G	1384.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=33.77;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr16	89267937	rs112083449	G	A	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:79,174:0.69:253
chr16	89287613	rs10586525	CAG	C	1984.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr16	89288418	rs9931258	A	G	2439.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr16	89291210	rs113560259	G	GGTGA	3325.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	89291309	rs28533907	A	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	89291945	rs11464538	A	AT	3799.73	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:4,172:0.98:176
chr16	89291948	rs12926996	C	T	8311.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,182:1.00:182
chr16	89291951	rs12926997	C	T	8357.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.22;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr16	89293271	rs28417933	A	C	11172.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr16	89293614	rs4785626	A	G	8171.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr16	89294381	rs28415940	T	C	10579.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr16	89294439	rs9921361	G	T	9893.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	89294511	rs28638280	C	T	8629.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr16	89294595	rs74466939	C	T	4645.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:103,200:0.66:303
chr16	89294697	rs60437616	C	T	7047.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr16	89299054	rs71158785	T	TA	1456.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.372;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=6.876;MLEAC=2;MLEAF=1.000;MQ=60.55;MQRankSum=0.784;QD=15.17;ReadPosRankSum=0.407;SOR=2.133;set=HC	GT:AD:AF:DP	1/1:12,84:0.88:96
chr16	89299200	rs61078268	C	A	33899.77	.	AC=2;AF=1.00;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	1/1:0,793:1.00:793
chr16	89299227	rs62068537	C	T	38753.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr16	89299280	rs62068538	T	A	32233.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,797:1.00:797
chr16	89299888	.	T	TCG	1128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.122;ClippingRankSum=0.000;DP=532;ExcessHet=3.0103;FS=8.704;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=2.666;QD=5.97;ReadPosRankSum=-11.458;SOR=1.257;set=HC	GT:AD:AF:DP	0/1:103,86:0.46:189
chr16	89299890	rs34356864	A	G,ACTGCGTGTGCAACTCAACTCG	23522.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.45;QD=124.46;SOR=1.253;set=HC	GT:AD:AF:DP	1/2:0,103,86:0.54,0.46:189
chr16	89299899	rs34175485	A	G	25333.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.46;QD=39.96;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,634:1.00:634
chr16	89300015	rs62068548	A	G	24404.77	.	AC=2;AF=1.00;AN=2;DB;DP=960;set=Intersection	GT:AD:AF:DP	1/1:15,938:0.98:953
chr16	89300147	rs62068549	A	G	26611.77	.	AC=2;AF=1.00;AN=2;DB;DP=1034;set=Intersection	GT:AD:AF:DP	1/1:2,1029:1.00:1031
chr16	89345122	rs3102367	G	A	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	89345161	.	GGA	G	2324.73	.	AC=1;AF=0.500;AN=2;DP=77;set=Intersection	GT:AD:AF:DP	0/1:9,62:0.87:71
chr16	89345408	rs3096305	G	A	9746.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr16	89350038	rs2279348	G	A	19144.77	.	AC=2;AF=1.00;AN=2;DB;DP=710;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr16	89350178	rs2279349	G	A	9826.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr16	89350505	.	G	A	690.77	.	AC=1;AF=0.500;AN=2;DP=118;set=Intersection	GT:AD:AF:DP	0/1:82,36:0.31:118
chr16	89356880	.	A	AAT	109	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=27;MMLQ=15;MQ=53.25;NF=7;NR=0;PP=109;QD=21.7142857143;SC=TCAGGGCTCCAGCGGGGGAGG;SbPval=1.0;Source=Platypus;TC=31;TCF=25;TCR=6;TR=7;WE=89356889;WS=89356871;set=Platypus	GT:AD:AF:DP	1/0:24,7:0.23:31
chr16	89356881	.	GC	G	109	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=1;HapScore=1;MGOF=27;MMLQ=23;MQ=52.72;NF=7;NR=1;PP=109;QD=19.0;SC=CAGGGCTCCAGCGGGGGAGGC;SbPval=0.86;Source=Platypus;TC=31;TCF=24;TCR=7;TR=8;WE=89356889;WS=89356871;set=Platypus	GT:AD:AF:DP	1/0:23,8:0.26:31
chr16	89356882	.	CGGGGGAGGCTCAGGGCTCCAATG	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=6.57;ReadPosRankSum=-2.251;SOR=0.127;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr16	89371827	rs3114912	G	A	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:73,53:0.42:126
chr16	89371839	rs2277908	G	A	716.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:60,38:0.39:98
chr16	89379936	rs3102350	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr16	89389645	rs3114900	G	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr16	89612500	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.132;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=1.750;SOR=0.188;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr16	89612979	.	ACC	A,AC	4101.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=172;set=Intersection	GT:AF:DP	1/2:0.30,0.65:167
chr16	89614534	rs80324518	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:120,58:0.33:178
chr16	89629218	rs258327	A	G	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr16	89645437	rs369230	G	T	2808.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:80,127:0.61:207
chr16	89649675	rs455868	G	A	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:16,29:0.64:45
chr16	89650371	rs408800	T	G	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,65:0.76:86
chr16	89653524	.	C	CCCGCCCCATG	2976	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=3;HapScore=1;MGOF=21;MMLQ=23;MQ=59.68;NF=1;NR=39;PP=2976;QD=20;SC=AGTCCATGGCCCCGCCCCATG;SbPval=0.97;Source=Platypus;TC=75;TCF=7;TCR=68;TR=40;WE=89653532;WS=89653514;set=Platypus	GT:AD:AF:DP	1/1:35,40:0.53:75
chr16	89653540	.	CCCT	C	3196.73	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=43.20;SOR=4.033;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	89653542	.	C	A	2111	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=4;HapScore=1;MGOF=18;MMLQ=23;MQ=59.18;NF=3;NR=32;PP=2111;QD=61.3077489299;SC=ATGCCGCCCCCTCAGTCCGTG;SbPval=0.99;Source=Platypus;TC=59;TCF=14;TCR=45;TR=35;WE=89653573;WS=89653532;set=Platypus	GT:AD:AF:DP	1/0:24,35:0.59:59
chr16	89653543	.	TCAGTCCGTGGCCCCGCCCCGC	T	2954	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=6;HapScore=1;MGOF=18;MMLQ=23;MQ=58.73;NF=0;NR=39;PP=2954;QD=20;SC=TGCCGCCCCCTCAGTCCGTGG;SbPval=1.0;Source=Platypus;TC=43;TCF=0;TCR=43;TR=39;WE=89653573;WS=89653532;set=Platypus	GT:AD:AF:DP	1/0:4,39:0.91:43
chr16	89653545	.	AGTCCG	A	3194.73	.	AC=2;AF=1.00;AN=2;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.32;QD=42.60;SOR=4.062;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	89653552	.	GGCCCCGCCCCGCC	G	3190.73	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.46;QD=46.92;SOR=4.743;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr16	89653816	rs74213330	G	A	1013.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr16	89654123	rs76691791	AG	GT	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-0.732;QD=30.59;ReadPosRankSum=-0.317;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr16	89654130	rs71374184	C	G	1031.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.366;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-0.646;QD=33.28;ReadPosRankSum=-1.653;SOR=1.109;set=HC	GT:AD:AF:DP	0/1:6,25:0.81:31
chr16	89656163	rs397564	A	G	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr16	89656251	rs464349	T	C	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:4,275:0.99:279
chr16	89696999	rs395593	C	T	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.13;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr16	89703797	rs34422500	C	T	8011.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:166,347:0.68:513
chr16	89704365	rs1126464	G	C	2885.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:327,164:0.33:491
chr16	89717781	rs141950187	AAAAC	A	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chr16	89720409	rs258338	T	A	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr16	89724572	rs154664	T	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	89735923	rs9937322	G	C	668.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr16	89753067	rs148588932	GGGCCGTCCGCGTCTGCGCCTGCGCGCAAGAGA	G	1013.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.80;ReadPosRankSum=0.852;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:98,32:0.25:130
chr16	89753971	rs258325	T	C	7308.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr16	89754255	rs258324	T	G	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr16	89757199	rs62068364	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr16	89758973	rs187282	A	G	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr16	89760552	rs460057	T	C	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr16	89760652	rs2162943	C	T	5234.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:114,239:0.68:353
chr16	89760712	rs2115400	G	A	3715.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:81,164:0.67:245
chr16	89763045	rs460367	C	T	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr16	89763214	rs4247353	T	C	4154.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:97,185:0.66:282
chr16	89763263	rs462769	T	C	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:153,60:0.28:213
chr16	89763359	rs3803690	G	C	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:26,80:0.75:106
chr16	89764549	rs3751695	G	A	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:222,118:0.35:340
chr16	89774396	rs1110331	G	A	8600.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr16	89774411	rs11860230	T	C	7609.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr16	89775422	rs59660050	C	G	3158.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr16	89775429	rs143353176	C	CCCCG	3047.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr16	89777123	rs148694296	C	T	4989.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:155,226:0.59:381
chr16	89777761	rs12920315	C	T	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr16	89778224	rs7206836	G	C	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr16	89779139	rs111488775	AGCT	A	4225.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:53,107:0.67:160
chr16	89782989	rs7206570	A	G	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr16	89783187	rs4785706	C	T	1994.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr16	89784336	rs7190099	C	T	21605.77	.	AC=1;AF=0.500;AN=2;DB;DP=1664;set=Intersection	GT:AD:AF:DP	0/1:623,1023:0.62:1646
chr16	89784521	rs10468304	T	A	42380.77	.	AC=2;AF=1.00;AN=2;DB;DP=1612;set=Intersection	GT:AD:AF:DP	1/1:0,1609:1.00:1609
chr16	89787340	rs117990130	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr16	89787962	rs115025067	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:31,20:0.39:51
chr16	89787968	rs147792551	C	G	738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.19;ReadPosRankSum=-2.281;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:21,35:0.62:56
chr16	89789311	rs8056353	G	A	2943.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:200,142:0.42:342
chr16	89795485	rs7204478	C	T	186.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr16	89795797	rs11640734	C	G	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,36:0.68:53
chr16	89795813	rs34120897	A	C	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr16	89799950	rs17177891	C	T	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:23,68:0.75:91
chr16	89800550	rs7189734	G	A	7579.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr16	89804335	rs17233826	CT	C	13365.73	.	AC=1;AF=0.500;AN=2;DB;DP=833;set=Intersection	GT:AD:AF:DP	0/1:262,530:0.67:792
chr16	89805261	rs1800359	A	G	10443.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr16	89805794	rs9282682	A	G	889.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr16	89805914	rs9282681	T	C	1590.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:24,70:0.74:94
chr16	89806063	rs1061647	G	C	1294.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:23,54:0.70:77
chr16	89806343	rs11647746	C	A	5408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.93;ReadPosRankSum=-1.504;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:79,138:0.64:217
chr16	89806347	rs7195906	A	T	5355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.292;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.91;ReadPosRankSum=-0.548;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:81,134:0.62:215
chr16	89807131	rs11649162	C	A	1028.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,45:0.58:78
chr16	89807233	rs11649210	C	G	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:135,138:0.51:273
chr16	89809171	rs34420680	C	T	3738.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:129,180:0.58:309
chr16	89809319	rs1800358	T	C	1754.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:56,85:0.60:141
chr16	89811196	rs9923733	T	C	715.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr16	89811209	rs17233623	C	T	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:24,34:0.59:58
chr16	89811546	rs2074904	A	G	1615.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:61,79:0.56:140
chr16	89812851	rs17233602	CTG	C	913.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;MQ=60.28;set=Intersection	GT:AD:AF:DP	0/1:15,24:0.62:39
chr16	89812930	rs34019730	G	A	827.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:105,51:0.33:156
chr16	89813194	rs1800355	C	T	4621.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:125,215:0.63:340
chr16	89815027	rs145051641	A	T	6740.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:125,300:0.71:425
chr16	89815152	rs17233497	G	A	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:67,158:0.70:225
chr16	89816314	rs17227064	A	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr16	89816333	rs17227057	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr16	89816367	rs1800344	T	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr16	89816407	rs17233455	A	G	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,18:0.62:29
chr16	89816424	rs17233448	G	T	410.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:10,17:0.63:27
chr16	89818491	rs3743860	T	C	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:79,49:0.38:128
chr16	89825065	rs17226980	G	A	4746.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:110,213:0.66:323
chr16	89828437	rs17233253	A	G	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:70,117:0.63:187
chr16	89828484	rs17226841	C	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:44,51:0.54:95
chr16	89828977	.	G	GAAA	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=-0.104;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr16	89829196	rs12598276	G	C	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr16	89831243	rs11076619	C	A	5637.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:107,248:0.70:355
chr16	89831510	rs2159116	C	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=-0.206;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:114,40:0.26:154
chr16	89831520	rs11076620	A	T	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:36,108:0.75:144
chr16	89831558	rs12600151	C	T	1438.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr16	89831630	rs12600047	G	A	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr16	89836323	rs7195066	C	T	5163.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:133,229:0.63:362
chr16	89836507	rs7200990	T	C	9882.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr16	89836865	rs886951	A	G	1092.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.84;ReadPosRankSum=-1.547;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:16,28:0.64:44
chr16	89836872	rs886950	T	C	1130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.56;ReadPosRankSum=-1.275;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:18,30:0.62:48
chr16	89836899	rs1800341	T	C	784.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:47,37:0.44:84
chr16	89837951	rs11076622	T	C	618.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr16	89839637	rs1800339	C	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr16	89839766	rs17232910	G	C	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:43,110:0.72:153
chr16	89839854	rs17226519	T	C	1743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.740;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-1.547;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:47,82:0.64:129
chr16	89839976	rs17226512	T	C	327.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr16	89842374	rs1558184	T	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.307;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=8.41;ReadPosRankSum=1.020;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr16	89845110	rs7187436	A	T	972.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.445;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.618;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.79;ReadPosRankSum=1.370;SOR=1.355;set=HC	GT:AD:AF:DP	0/1:10,25:0.71:35
chr16	89845110	.	AT	TC	1000	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=1;HapScore=1;MGOF=27;MMLQ=24;MQ=59.84;NF=18;NR=6;PP=1000;QD=43.8944947859;SC=ATAAAACACAATAGTGGTCTA;SbPval=0.52;Source=Platypus;TC=42;TCF=32;TCR=10;TR=24;WE=89845119;WS=89845100;set=Platypus	GT:AD:AF:DP	0/1:18,24:0.57:42
chr16	89845111	rs11642010	T	C	972.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.353;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=1.131;SOR=1.432;set=HC	GT:AD:AF:DP	0/1:10,26:0.72:36
chr16	89845178	rs36204974	T	TAC	3253.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:35,77:0.69:112
chr16	89845194	rs1800337	A	G	3657.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:39,99:0.72:138
chr16	89845287	rs2302162	A	G	2886.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:59,126:0.68:185
chr16	89846195	rs1800335	A	G	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr16	89849480	rs2239359	C	T	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr16	89851179	rs17232630	C	T	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:41,82:0.67:123
chr16	89857935	rs11646374	G	A	2605.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:38,109:0.74:147
chr16	89858417	rs1800331	C	A	4935.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:138,227:0.62:365
chr16	89858525	rs1800287	C	G	3291.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:93,145:0.61:238
chr16	89858759	rs17226159	C	T	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr16	89859015	rs35617323	GT	G	858.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:32,30:0.48:62
chr16	89859035	rs17232533	G	A	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:23,20:0.47:43
chr16	89862202	rs17226075	C	T	67.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr16	89862434	rs11648881	T	C	1475.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.910;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.72;ReadPosRankSum=-1.632;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:45,71:0.61:116
chr16	89866043	rs7190823	T	C	3962.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:100,188:0.65:288
chr16	89866160	rs7186192	A	G	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr16	89869761	rs1800286	T	C	10391.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr16	89874559	rs11076627	A	C	1151.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr16	89874628	rs1800285	C	T	4077.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:92,179:0.66:271
chr16	89877269	rs2074963	T	C	4873.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:124,219:0.64:343
chr16	89882807	rs78004870	G	T	690.18	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr16	89882826	rs72631431	C	T	751.84	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:4,29:0.88:33
chr16	89883007	rs1800282	A	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.794;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=2.007;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr16	89902482	rs12598477	T	C	1451.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr16	89911681	rs17719345	G	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=2.811;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.735;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:134,56:0.29:190
chr16	89912000	rs62056069	C	T	2956.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:68,134:0.66:202
chr16	89916600	rs12598316	C	A	8891.77	.	AC=1;AF=0.500;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	0/1:191,395:0.67:586
chr16	89916879	rs146569219	C	CGAG	10972.73	.	AC=1;AF=0.500;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	0/1:156,279:0.64:435
chr16	89920957	rs12598737	A	G	5295.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:123,237:0.66:360
chr16	89921119	rs12598756	A	C	2048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.392;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.61;ReadPosRankSum=-0.298;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:26,54:0.68:80
chr16	89921126	rs12599205	T	G	1932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.044;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=1.111;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.42;ReadPosRankSum=-1.106;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:21,47:0.69:68
chr16	89921128	rs12598757	A	G	1881.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.95;ReadPosRankSum=-1.285;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:20,45:0.69:65
chr16	89921139	.	T	TGCAGAG	738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=10.400;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=-0.679;SOR=2.580;set=HC	GT:AD:AF:DP	0/1:30,21:0.41:51
chr16	89921141	.	T	TCG	738.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.605;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=10.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.08;ReadPosRankSum=-1.962;SOR=2.387;set=HC	GT:AD:AF:DP	0/1:30,19:0.39:49
chr16	89921142	.	T	TGGTGAGCGGGGCAGACGCAGAG	667.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.114;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=11.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.52;ReadPosRankSum=-1.651;SOR=2.921;set=HC	GT:AD:AF:DP	0/1:30,16:0.35:46
chr16	89922485	rs1105691	T	C	6390.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;MQRankSum=-0.131;QD=25.56;ReadPosRankSum=1.680;SOR=0.276;set=HC	GT:AD:AF:DP	1/1:1,249:1.00:250
chr16	89925556	rs7200842	G	A	3554.77	.	AC=1;AF=0.500;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	0/1:241,180:0.43:421
chr16	89927265	rs11641897	C	T	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr16	89930087	rs62056090	T	A	1628.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr16	89930414	rs62056091	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr16	89930426	rs62056092	A	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:19,28:0.60:47
chr16	89950901	rs62052174	G	A	1002.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,43:0.62:69
chr16	89951163	rs35381891	T	C	1183.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:31,74:0.70:105
chr16	89952385	.	C	CGCCCTTCTCTGCGGCT,CGCCCTTCTCTGTGGCTGCCCTTCTCTGCGGCT	3070.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.47;QD=37.91;SOR=2.513;set=HC	GT:AD:AF:DP	1/2:0,11,70:0.14,0.86:81
chr16	89954138	rs9922515	G	C	2148.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:58,102:0.64:160
chr16	89958538	rs11647174	G	A	7178.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:157,337:0.68:494
chr16	89961593	rs7186976	A	G	4974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.014;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.81;ReadPosRankSum=0.206;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:110,129:0.54:239
chr16	89961597	rs7191836	T	C	4925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.801;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.96;ReadPosRankSum=1.799;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:109,126:0.54:235
chr16	89961661	rs7184960	G	A	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:38,66:0.63:104
chr16	89962394	rs2293586	A	G	7001.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:190,327:0.63:517
chr16	89964952	rs72813432	A	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:185,94:0.34:279
chr16	89965055	rs11648433	G	A	9393.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:184,422:0.70:606
chr16	89966921	rs62052183	C	A	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:15,38:0.72:53
chr16	89967217	rs62052184	T	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:18,63:0.78:81
chr16	89970753	rs79597287	A	AT	1073.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;MQ=60.23;set=Intersection	GT:AD:AF:DP	0/1:38,48:0.56:86
chr16	89972532	rs11862382	A	C	1325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.054;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-1.030;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:27,61:0.69:88
chr16	89973777	rs143440936	CTCCCAGT	C	981.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.444;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=11.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.664;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:79,32:0.29:111
chr16	89973781	.	CAG	C	2849.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.099;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=13.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.277;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:36,75:0.68:111
chr16	89973782	.	AGT	TCC	2934	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=3;HapScore=1;MGOF=37;MMLQ=29;MQ=56.12;NF=8;NR=56;PP=2934;QD=20;SC=CCCTCCTCCCAGTTCCCAGCT;SbPval=0.99;Source=Platypus;TC=112;TCF=31;TCR=81;TR=64;WE=89973804;WS=89973767;set=Platypus	GT:AD:AF:DP	0/1:48,64:0.57:112
chr16	89973784	.	T	TCC	2849.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.850;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=13.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=0.013;SOR=2.027;set=HC	GT:AD:AF:DP	0/1:36,75:0.68:111
chr16	89973795	.	CA	TG	2122.77	.	AC=1;AF=0.500;AN=2;DP=89;JOINED;set=Intersection	GT:AD:AF:DP	0/1:37,48:0.56:85
chr16	89973796	.	A	G	925	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=0.5000;HP=3;HapScore=1;MGOF=38;MMLQ=28;MQ=55.58;NF=9;NR=62;PP=925;QD=13.5179044021;SC=CCCAGCTCCCAGCTCCCACCT;SbPval=0.91;Source=Platypus;TC=90;TCF=18;TCR=72;TR=71;WE=89973804;WS=89973767;set=Platypus	GT:AD:AF:DP	1/1:19,71:0.79:90
chr16	89973811	.	GC	G	2212.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.448;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=7.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=38.15;ReadPosRankSum=0.460;SOR=2.847;set=HC	GT:AD:AF:DP	0/1:6,52:0.90:58
chr16	89973813	.	TCCAACCTTCCAGC	T	2121.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.502;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=9.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=37.89;ReadPosRankSum=0.551;SOR=2.878;set=HC	GT:AD:AF:DP	0/1:8,48:0.86:56
chr16	89975496	rs57940434	G	A	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:38,99:0.72:137
chr16	89975555	rs62052189	G	C	1229.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr16	89975572	rs57492102	A	G	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr16	89975638	rs1137042	A	G	378.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr16	89977745	rs11538871	C	T	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr16	89981345	.	TTG	T,TTGTG	2746.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=121;set=Intersection	GT:AF:DP	0/1:0.76:120
chr16	89985940	rs2228479	G	A	11727.77	.	AC=1;AF=0.500;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	0/1:276,531:0.66:807
chr16	89986144	rs1805008	C	T	3350.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=675;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-1.399;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:471,201:0.30:672
chr16	89986608	rs2228478	A	G	11069.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:293,503:0.63:796
chr16	89987201	rs3212371	A	G	1999.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:46,89:0.66:135
chr16	90000044	rs77681059	C	T	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:356,173:0.33:529
chr16	90000925	rs4396536	T	C	5069.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr16	90002290	rs1135425	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:34,14:0.29:48
chr16	90004868	rs56378598	C	T	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:197,115:0.37:312
chr16	90015960	rs6500462	G	C	1663.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=410;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=1.276;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:296,113:0.28:409
chr16	90020861	rs7195043	C	T	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:42,24:0.36:66
chr16	90027626	rs8063761	A	T	453.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:32,21:0.40:53
chr16	90028106	rs8048449	T	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:50,20:0.29:70
chr16	90030355	rs13330431	T	C	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.363;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.79;ReadPosRankSum=0.595;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:104,72:0.41:176
chr16	90037828	rs4785755	G	A	5690.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:105,253:0.71:358
chr16	90050880	rs4785759	A	C	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:54,94:0.64:148
chr16	90075100	rs11642185	C	G	694.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,21:0.54:39
chr16	90075412	rs2241084	T	C	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr16	90085646	.	C	T	33.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.35;ReadPosRankSum=-0.472;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr16	90102835	rs868045	A	G	6775.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr16	90103087	rs4464078	C	T	9274.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr16	90103117	rs7498985	G	A	6257.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr16	90103246	rs4374173	C	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr16	90108832	rs2241035	C	T	13204.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr16	90109711	rs3743825	A	G	6882.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr16	90128224	rs2077426	C	G	3011.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr16	90133137	rs16966444	G	T	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr16	90141288	.	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DP=219;ExcessHet=3.0103;FS=0.685;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.953;QD=0.37;ReadPosRankSum=-0.045;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:169,38:0.18:207
chr16	90141355	rs12925933	A	C	9000.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=25.79;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr16	90141477	rs7196459	T	G	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr16	90142087	rs35256427	G	A	13196.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr16	90161065	rs8051193	A	T	905.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:58,48:0.45:106
chr16	90161164	rs8049480	G	A	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.89;QD=42.79;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr16	90161167	.	C	T	977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.445;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.50;MQRankSum=-3.079;QD=13.58;ReadPosRankSum=-0.359;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:35,37:0.51:72
chr16	90161168	rs191288996	T	G	3338.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.69;QD=46.37;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr16	90161231	rs8055916	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:55,49:0.47:104
chr16	90161292	rs6500468	G	C	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr17	6115	rs61739713	G	C	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	6157	rs2294076	A	G	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	11743	rs34663111	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	11830	rs62054999	A	G	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	13905	rs6565705	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	14008	rs2294075	G	C	2941.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	22211	rs2294074	G	A	512.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	65632	rs7207457	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	69317	.	C	CTTTTTTT	629.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;MQRankSum=0.516;QD=39.36;ReadPosRankSum=0.869;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chr17	131516	rs12942829	C	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	181474	rs12953074	T	C	12833.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	181479	rs12947988	C	A	12990.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	182990	.	A	C	1383	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=23;MQ=55.23;NF=17;NR=55;PP=1383;QD=19.6912668409;SC=GACACAGAGAAGGCCATTAGA;SbPval=0.48;Source=Platypus;TC=74;TCF=17;TCR=57;TR=72;WE=182998;WS=182980;set=Platypus	GT:AD:AF:DP	1/1:2,72:0.97:74
chr17	423051	rs2034088	T	C	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	440108	rs11653961	A	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	463843	rs741677	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.69;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	465993	rs36070043	G	GA	403.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;MQ=60.42;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	504978	rs10521105	C	G	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	505162	rs4968055	A	G	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	505227	rs7225041	G	C	1145.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	505250	rs4968092	A	G	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	600502	rs2657633	C	T	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	602469	rs2543781	G	C	864.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	617869	rs11558129	G	A	10397.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	617993	rs35915949	C	T	10579.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr17	636266	rs141977343	A	AGGGCC	2693.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	636320	rs111405529	T	TCTC	5686.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	648157	rs1045481	G	A	1247.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	648498	rs2740349	C	T	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	649505	rs4968104	T	A	4928.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	649935	rs2740348	G	C	8790.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	673895	rs2644706	C	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:1,19:0.95:20
chr17	680299	rs2273453	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	685752	rs2249542	G	A	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	686589	rs35144249	C	CT	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.702;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=10.53;ReadPosRankSum=-0.095;SOR=1.189;set=HC	GT:AD:AF:DP	0/1:13,37:0.74:50
chr17	725478	rs11870148	C	T	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	902869	rs12941159	A	G	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	909451	rs2586306	A	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	910401	rs2586305	G	A	1139.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.046;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;MQRankSum=3.960;QD=24.78;ReadPosRankSum=1.242;SOR=0.434;set=HC	GT:AD:AF:DP	1/1:1,45:0.98:46
chr17	910636	rs2586304	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	915333	rs67186058	G	C	9146.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	915368	rs333652	A	G	8390.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:3,297:0.99:300
chr17	934766	.	CCCCCGCAG	C	264.77	.	AC=2;AF=1.00;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	934898	rs9903778	G	A	814.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	934984	.	C	CGG	1188.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.92;QD=37.15;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	960221	rs2304959	C	G	5170.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	961149	rs9912632	T	A	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	961304	rs2260448	C	A	1444.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	961900	rs2304961	G	A	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	970251	rs2258097	TG	CA	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	970413	rs2262150	C	T	1899.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	976711	rs2258893	T	C	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	1083083	rs62070499	A	G	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.08;SOR=1.927;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	1183354	rs6502774	T	C	9883.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	1183464	rs6502776	A	G	11325.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	1264611	rs140254754	TA	T	492.25	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.727;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=0.911;QD=10.47;ReadPosRankSum=0.577;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:8,39:0.83:47
chr17	1265304	rs34985093	T	TA	890.50	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr17	1265325	rs3752827	T	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	1326754	.	GA	G	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.789;ClippingRankSum=0.000;DP=149;ExcessHet=3.0103;FS=4.541;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.36;ReadPosRankSum=0.618;SOR=1.321;set=HC	GT:AD:AF:DP	0/1:114,28:0.20:142
chr17	1359363	rs2229075	T	G	13379.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,512:1.00:512
chr17	1370459	rs2302459	T	C	2735.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	1370720	rs2302457	C	T	9190.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	1371088	rs8069059	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	1371123	rs8072859	T	C	1642.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	1371473	rs8079811	C	G	5196.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	1371818	rs8080389	C	T	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	1372987	rs9303175	T	G	8857.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr17	1373518	rs9905106	T	C	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=1.227;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	1373612	rs8081370	C	T	3158.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.836;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.95;ReadPosRankSum=-0.801;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:1,112:0.99:113
chr17	1377878	rs2286871	T	C	9656.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.054;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	1377884	rs2286872	C	T	10003.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	1381005	rs2286876	T	C	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	1384066	rs4790518	A	G	18436.77	.	AC=2;AF=1.00;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr17	1386094	.	G	GCACTGA	1741	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=1;MGOF=29;MMLQ=26;MQ=58.7;NF=33;NR=14;PP=1741;QD=39.0461063895;SC=TCCCACACTGGGCTTCTCTCC;SbPval=0.5;Source=Platypus;TC=59;TCF=42;TCR=17;TR=47;WE=1386103;WS=1386084;set=Platypus	GT:AD:AF:DP	1/0:12,47:0.80:59
chr17	1386095	.	G	C	1712	.	AC=1;AF=0.500;AN=2;BRF=0.62;FR=0.5000;HP=2;HapScore=1;MGOF=29;MMLQ=25;MQ=58.93;NF=50;NR=16;PP=1712;QD=26.4662304931;SC=CCCACACTGGGCTTCTCTCCC;SbPval=0.72;Source=Platypus;TC=100;TCF=72;TCR=28;TR=66;WE=1386103;WS=1386084;set=Platypus	GT:AD:AF:DP	1/0:34,66:0.66:100
chr17	1387334	.	CA	C	202.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=2.562;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=-0.840;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:122,39:0.24:161
chr17	1389094	.	C	CCCGCCCCCCGCA	222.82	.	AC=2;AF=1.00;AN=2;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	1395682	rs12941864	C	T	10217.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,387:0.99:389
chr17	1412455	rs5818804	GC	G	1348.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	1465837	rs142675143	C	T	13005.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.78;SOR=2.082;set=HC	GT:AD:AF:DP	1/1:0,571:1.00:571
chr17	1480088	rs7222193	G	A	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	1489076	rs72820319	G	A	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	1489088	rs4790208	C	G	10392.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:1,385:1.00:386
chr17	1490379	rs143498029	A	ACACTGCGTTTCCCG	2667.73	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	1490409	rs8078582	T	C	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	1494027	rs4790668	T	C	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	1495028	rs55748456	A	G	412.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.93;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	1495029	.	G	A	384.77	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.38;SOR=5.892;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	1516267	rs7214201	A	G	230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.448;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr17	1516480	rs7219369	T	C	5814.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	1538546	rs4790250	C	T	7598.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	1538628	rs3744644	C	G	5708.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	1542153	rs2272012	G	A	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	1542190	rs2272011	G	A	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	1542803	.	GAA	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=3.210;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=3.37;ReadPosRankSum=0.378;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:32,13:0.29:45
chr17	1550106	rs2293067	C	T	2669.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	1583116	rs150020396	G	C	2826.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	1611433	rs4790809	A	G	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	1611545	rs4790810	A	C	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	1636945	rs146469235	C	T	7864.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	1674429	rs8074840	T	C	4736.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	1675127	rs4274474	C	T	346.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	1675138	rs4274475	C	T	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	1675451	rs5008943	T	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	1678256	rs2269344	G	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	1679793	rs2071021	A	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	1679805	rs2071022	A	G	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	1680002	rs6828	T	C	4179.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	1684772	rs7224977	T	C	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	1686410	rs9902398	T	C	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	1686563	rs11078639	C	T	639.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	1687796	rs3815612	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	1690303	rs34115092	AAG	A	2475.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	1690752	rs11549830	G	A	1515.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	1748028	rs4790827	A	G	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	1756351	rs2287321	A	G	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	1761431	rs3809874	T	C	8530.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.03;MQRankSum=-0.410;QD=27.88;ReadPosRankSum=0.736;SOR=0.254;set=HC	GT:AD:AF:DP	1/1:1,305:1.00:306
chr17	1761436	.	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;ClippingRankSum=0.000;DP=331;ExcessHet=3.0103;FS=1.724;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-11.914;QD=0.85;ReadPosRankSum=-4.239;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:308,23:0.07:331
chr17	1761445	.	C	T	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=1.501;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=-13.013;QD=0.79;ReadPosRankSum=-4.351;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:327,31:0.09:358
chr17	1761447	.	G	A	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369;ClippingRankSum=0.000;DP=362;ExcessHet=3.0103;FS=2.366;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-13.120;QD=0.78;ReadPosRankSum=-4.210;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:330,32:0.09:362
chr17	1761457	.	C	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=1.477;MLEAC=1;MLEAF=0.500;MQ=57.57;MQRankSum=-13.434;QD=0.78;ReadPosRankSum=-2.749;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:331,32:0.09:363
chr17	1778911	rs66498893	GTAGAA	G	3162.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	1782957	rs2230930	C	T	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	1795180	rs2230931	T	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	1800217	rs7406062	G	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	1839674	rs9902457	G	C	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	1840468	rs9903800	C	T	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	1933381	rs2273981	G	A	6662.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	1940232	rs1131600	A	G	6418.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	1943888	rs2236375	T	C	8929.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	1945041	rs7216804	A	G	6341.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	1945621	rs2015866	G	T	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.92;SOR=1.239;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	1945789	.	C	G	2191.77	.	AC=2;AF=1.00;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	1960974	rs77393586	C	T	2184.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	1964759	rs145926620	C	CG	1217.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr17	1965085	rs7214308	C	T	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	1965096	rs12939002	C	T	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	1968983	rs2232486	T	C	4008.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	1985050	rs8076897	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	2195933	rs3215741	GA	G	7615.73	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	2196088	rs216206	C	T	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	2196150	rs216205	C	T	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	2200434	rs170043	A	C	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr17	2203025	rs1885987	T	G	9591.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr17	2203175	rs1885986	C	G	9989.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	2203348	rs216194	T	C	13263.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr17	2203453	rs216193	A	G	16086.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:0,617:1.00:617
chr17	2221156	.	T	C	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.109;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=2.702;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=-2.115;SOR=0.970;set=HC	GT:AD:AF:DP	0/1:139,28:0.17:167
chr17	2222325	rs8081273	C	T	1483.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	2238741	.	TA	T	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.62;ReadPosRankSum=2.190;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:88,38:0.30:126
chr17	2276432	rs2302470	C	T	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	2297571	.	G	GCACACA,GCACACACA	4015.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=145;set=Intersection	GT:AF:DP	1/2:0.28,0.70:108
chr17	2310611	rs62067054	C	T	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	2318550	rs4613098	G	C	8452.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	2318695	rs4790335	G	A	5498.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.95;SOR=1.134;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	2322776	rs1056321	T	C	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	2565299	rs8067353	T	A	341.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.33;QD=20.10;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	2595215	rs5818873	GC	G	3918.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:2,131:0.98:133
chr17	2595248	.	CCGCCACGCCCCCGCCCCGCCCCCGCCCCCGCCA	C	5606.73	.	AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.58;SOR=2.481;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	2595291	rs62068251	C	T	5774.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	2597723	rs66960934	GCAGCGGGGACA	G	6586.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:4,259:0.98:263
chr17	2598627	rs1003398	T	C	20108.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr17	2598639	rs1003399	C	G	18713.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr17	2599612	rs2302200	C	G	4763.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	2604375	rs758417	C	T	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	2606715	rs1065479	G	A	17503.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:1,665:1.00:666
chr17	2607560	rs12953041	A	G	2546.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	2699935	rs123059	T	C	2172.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	2808508	rs62089741	C	T	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	2865789	rs34224666	A	C	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	2883588	rs17762452	C	A	6867.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	2921210	rs56791699	C	CGT	953.73	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:23,45:0.66:68
chr17	2921251	rs8064800	A	G	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	2923597	rs2304981	C	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	2923767	rs2304982	A	G	7193.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	2924011	rs4790416	T	C	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	2929286	rs4072679	A	C	8140.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	2929392	rs55904912	G	A	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	2929674	rs12941934	T	C	7391.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	2930223	rs4790114	T	C	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	2930339	rs4790115	G	A	9861.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	2935577	rs4239038	T	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.91;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	2935591	rs4239039	T	C	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	2935610	rs4261584	A	T	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	2965978	rs370377496	A	G	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.106;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.48;MQRankSum=-0.825;QD=3.84;ReadPosRankSum=-0.061;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:20,6:0.23:26
chr17	2966032	rs202049082	C	G	965.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.011;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.066;MLEAC=1;MLEAF=0.500;MQ=45.57;MQRankSum=-0.904;QD=8.47;ReadPosRankSum=0.460;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:70,44:0.39:114
chr17	2966173	rs61752193	G	C	8055.77	.	AC=1;AF=0.500;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	0/1:369,238:0.39:607
chr17	2966191	rs61752194	G	A	8396.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:363,249:0.41:612
chr17	2966273	rs2676567	G	A	6264.77	.	AC=1;AF=0.500;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	0/1:470,313:0.40:783
chr17	2966308	rs2855605	C	T	7302.77	.	AC=1;AF=0.500;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	0/1:511,379:0.43:890
chr17	3101076	rs2241092	G	C	5317.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	3101590	rs2469791	C	T	11571.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr17	3119008	rs4325604	T	C	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	3119673	rs769426	A	G	8307.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	3119767	rs769427	C	T	7631.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr17	3119871	rs17174920	C	T	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	3143983	rs200686480	A	G	8207.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.39;QD=26.74;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	3324004	rs146946227	C	T	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.68;QD=32.71;SOR=8.086;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	3324086	rs227788	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.40;QD=27.34;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	3324255	rs769432	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.56;QD=26.90;SOR=2.084;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	3336162	rs11867612	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	3336260	rs61739591	A	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	3337057	rs769431	A	G	4531.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	3349634	rs34586104	C	CTT	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	3352309	rs11556563	T	C	13181.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,519:1.00:519
chr17	3397702	rs12948217	C	T	6923.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.820;set=HC	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	3417123	rs906418	C	T	2187.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	3419689	rs8081785	CA	TG	6148.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	3424183	rs8079980	A	G	705.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	3424507	rs925101	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.66;QD=26.34;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	3427442	rs62069862	A	G	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	3430271	rs11657715	A	G	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	3435935	rs454738	C	A	3620.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	3436080	rs395357	C	T	13834.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,522:1.00:522
chr17	3445959	.	G	A	12291.77	.	AC=2;AF=1.00;AN=2;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr17	3446885	rs322937	T	C	14589.77	.	AC=2;AF=1.00;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	1/1:2,586:1.00:588
chr17	3448434	rs9911213	A	G	5551.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	3449726	rs34223256	ACT	A	1119.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	3449808	rs62069871	T	G	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	3449810	rs62069872	G	A	2651.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	3449817	rs62069873	G	A	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.66;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	3449907	rs423431	T	C	2295.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	3450007	rs390804	C	T	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3457954	rs11453205	T	TG	2296.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:1,78:0.99:79
chr17	3458072	rs322965	T	C	7563.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	3475367	rs224548	T	G	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	3475405	rs224549	C	T	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	3475564	rs224550	C	T	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	3476826	rs11441416	G	GC	1554.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chr17	3476832	rs2456855	A	C	1860.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.894;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;MQRankSum=0.297;QD=35.11;ReadPosRankSum=-0.117;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:2,51:0.96:53
chr17	3486702	rs224534	G	A	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	3489244	rs161394	G	A	4051.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	3492002	rs161390	A	G	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	3492057	rs161389	G	A	2277.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	3492120	rs201774093	A	AC,AAC	7543.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=61.39;QD=42.38;SOR=0.918;set=HC	GT:AD:AF:DP	1/2:1,134,43:0.75,0.24:178
chr17	3493533	rs161387	A	G	7944.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:1,309:1.00:310
chr17	3513719	rs465563	G	A	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	3514028	rs224496	G	C	11290.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,418:1.00:418
chr17	3552372	rs161351	G	C	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	3553526	rs161350	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	3558417	rs459613	C	G	6844.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	3558698	rs467277	G	A	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	3561396	rs161400	C	T	3639.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	3566857	rs11541134	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	3567461	rs2235107	G	A	8575.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	3568012	rs8278	A	G	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:2,341:0.99:343
chr17	3571863	rs160589	G	A	4143.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	3577273	rs160587	A	G	2451.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	3591822	rs220488	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	3592740	rs220487	T	C	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	3593074	rs220486	A	G	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	3618298	rs1367950	C	T	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	3620138	rs2293881	A	G	3524.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	3626557	rs370710778	T	C	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	3627473	rs9907144	C	T	16251.77	.	AC=2;AF=1.00;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr17	3627840	rs220462	G	A	21990.77	.	AC=2;AF=1.00;AN=2;DB;DP=831;set=Intersection	GT:AD:AF:DP	1/1:0,830:1.00:830
chr17	3628212	rs220461	T	C	6169.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	3628362	rs3809806	T	C	5984.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	3629698	rs170208	A	G	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:1,168:0.99:169
chr17	3632836	rs1716	G	A	5355.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	3632952	rs2915554	C	T	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	3687533	rs55722017	A	G	1044.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.88;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	3717896	rs9897428	A	T	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	3728903	rs12940049	T	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3746537	rs5818919	C	CT	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=5.338;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.981;QD=9.38;ReadPosRankSum=-0.326;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:23,58:0.72:81
chr17	3801080	rs711174	C	T	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	3828091	rs3084	G	A	14435.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,554:1.00:554
chr17	3828702	rs887387	T	C	9239.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	3831240	rs753960	C	T	13851.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr17	3832182	rs9747965	G	A	4210.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	3833500	.	C	T	348	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=2;MGOF=4;MMLQ=27;MQ=56.22;NF=13;NR=1;PP=348;QD=27.3408008962;SC=GCGCCCAGCCCACCTGGACCC;SbPval=0.63;Source=Platypus;TC=43;TCF=40;TCR=3;TR=14;WE=3833508;WS=3833490;set=Platypus	GT:AD:AF:DP	1/1:29,14:0.33:43
chr17	3833740	rs10153291	G	A	10423.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr17	3839685	rs1062683	G	A	7497.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	3839829	rs17846891	C	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	3840686	rs36057213	A	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	3840694	rs34866939	GA	G	5627.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	3840928	rs3179783	A	G	7279.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	3844671	rs55858476	G	A	28198.77	.	AC=2;AF=1.00;AN=2;DB;DP=1057;set=Intersection	GT:AD:AF:DP	1/1:0,1054:1.00:1054
chr17	3844985	rs17846890	A	C	3487.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	3845927	rs17846889	A	G	6328.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	3846675	rs71366582	C	T	8256.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	3846802	rs758641	A	G	13854.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr17	3846891	rs146621763	TG	T	6213.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	3846899	rs757611	C	A	6100.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	3848013	rs1800911	A	C	5300.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	3854837	rs56224024	A	AC,ACC	634.50	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=53;set=Intersection	GT:AF:DP	0/1:0.84:37
chr17	3854839	.	CG	C	472	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.6143;HP=1;HapScore=3;MGOF=3;MMLQ=28;MQ=57.15;NF=3;NR=22;PP=472;QD=19.92;SC=GCTGGGAGACCGCCCCCCGCC;SbPval=1.0;Source=Platypus;TC=59;TCF=26;TCR=33;TR=25;WE=3854848;WS=3854827;set=Platypus	GT:AD:AF:DP	1/0:34,25:0.42:59
chr17	3854840	rs2302298	G	C	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.99;SOR=3.516;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	3856615	rs1800915	A	G	7057.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	3985832	rs2727061	A	G	11938.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr17	3989669	.	G	A	560	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=28;MQ=60.0;NF=22;NR=6;PP=560;QD=21.2418290195;SC=TTCCCACAGCGGCAATCCCTT;SbPval=0.56;Source=Platypus;TC=28;TCF=22;TCR=6;TR=28;WE=3989677;WS=3989659;set=Platypus	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	3989968	rs2727060	C	T	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	3994170	rs2727075	T	C	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4005770	rs1869493	T	C	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	4007875	rs9907500	C	T	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	4027036	rs11078481	C	G	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	4027047	rs7225521	A	G	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	4027392	rs7208760	G	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	4045809	rs4239043	T	C	10242.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	4046101	rs1454121	A	G	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr17	4046270	rs1454122	T	C	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:1,83:0.99:84
chr17	4071302	rs4790583	G	C	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	4071326	rs4790178	C	G	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	4074261	rs897030	A	C	780.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	4077485	rs4790585	G	A	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	4088291	rs2020118	C	T	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	4098573	rs5818941	A	AT	6112.73	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:12,273:0.96:285
chr17	4166804	rs2325881	C	T	6956.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr17	4192401	.	TAC	T	115.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr17	4350182	rs2047233	T	C	4800.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	4350367	rs2047232	A	G	6119.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,226:0.99:228
chr17	4350373	rs3055435	GGT	G	5090.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:7,204:0.97:211
chr17	4350407	rs2047231	G	C	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,145:0.99:146
chr17	4351396	rs6502786	C	T	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	4351640	rs884250	G	A	17805.77	.	AC=2;AF=1.00;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	1/1:0,683:1.00:683
chr17	4352539	rs7224464	C	T	11054.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr17	4391132	rs2291743	C	T	17373.77	.	AC=2;AF=1.00;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr17	4391153	rs333122	A	G	15300.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr17	4391201	rs2291742	A	G	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	4402803	rs184566	T	C	2766.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	4436005	rs9892232	T	C	5916.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	4437214	rs4790202	C	T	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	4439313	rs1077200	A	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	4439501	rs1076071	C	G	22374.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,815:1.00:815
chr17	4439532	rs1076072	T	C	28354.77	.	AC=2;AF=1.00;AN=2;DB;DP=1088;set=Intersection	GT:AD:AF:DP	1/1:2,1085:1.00:1087
chr17	4439683	rs183074870	G	C	13287.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr17	4440907	rs34901192	A	G	12942.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr17	4443832	rs139046865	G	A	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	4447743	rs74680401	G	T	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	4455162	rs76953250	G	A	3846.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	4455500	rs7206974	T	C	20879.77	.	AC=2;AF=1.00;AN=2;DB;DP=821;set=Intersection	GT:AD:AF:DP	1/1:2,817:1.00:819
chr17	4458598	rs3809849	G	C	8222.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	4461748	rs7215121	G	A	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	4463699	rs7216284	G	A	13485.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:2,512:1.00:514
chr17	4463796	rs7216474	G	A	8274.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	4495682	rs4790654	G	A	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	4497084	rs9908079	G	T	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	4498611	rs12103697	G	A	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	4498682	rs4790655	C	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	4500072	rs9906333	A	G	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	4513974	rs111699059	A	AAAAG	5262.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:13,215:0.94:228
chr17	4534834	rs916055	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	4541744	rs899452	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	4541995	rs34766541	G	A	7932.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	4542717	rs11078528	G	A	11589.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr17	4544729	rs9906597	A	G	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,267:0.99:269
chr17	4544978	rs369435246	G	GAGA	7211.73	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	4545581	rs2255888	C	T	7317.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	4575283	rs3862485	A	G	6448.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	4577112	rs11658808	G	A	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	4578007	rs4790673	C	G	26351.77	.	AC=2;AF=1.00;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	1/1:0,970:1.00:970
chr17	4579638	rs8071990	G	A	6335.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	4580137	rs6502806	A	G	9479.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr17	4580224	rs11078530	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	4585821	rs11541059	G	A	11740.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr17	4586253	rs34352526	GA	G	3798.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4594847	rs7226084	T	C	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	4620497	rs7208257	C	T	14202.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,532:1.00:532
chr17	4622071	rs2036656	C	G	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.06;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	4622077	rs11463798	C	CT	797.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.85;ReadPosRankSum=-1.716;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:22,59:0.73:81
chr17	4622638	rs1045280	C	T	33804.77	.	AC=2;AF=1.00;AN=2;DB;DP=1300;set=Intersection	GT:AD:AF:DP	1/1:0,1296:1.00:1296
chr17	4636565	rs8123	T	G	2151.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	4638010	rs3744700	T	G	14772.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:1,552:1.00:553
chr17	4644491	rs9903643	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	4645324	rs3826517	T	C	15380.77	.	AC=2;AF=1.00;AN=2;DB;DP=590;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr17	4646480	rs12451720	C	T	1725.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	4646533	rs369534237	C	CAA	3530.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.04;ReadPosRankSum=2.888;SOR=1.200;set=HC	GT:AD:AF:DP	1/1:6,135:0.96:141
chr17	4647002	rs8082690	A	G	7363.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	4649030	.	G	GCCCCTGGGAGCCCCGA	5307.73	.	AC=2;AF=1.00;AN=2;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.92;QD=58.97;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	4686340	rs3853643	TT	GG	15879.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	4688996	rs2279962	A	C	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	4693054	rs12951761	G	A	27582.77	.	AC=2;AF=1.00;AN=2;DB;DP=1048;set=Intersection	GT:AD:AF:DP	1/1:0,1044:1.00:1044
chr17	4693170	rs34850425	T	C	6136.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	4693342	rs35910358	C	A	3993.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	4693508	rs34421346	G	C	4703.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	4699845	rs76272325	G	T	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	4699947	rs2241933	T	G	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	4700695	rs76289772	AG	A	10711.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	4701402	rs7468	C	T	9665.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	4712395	rs1132446	A	T	17480.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr17	4713981	rs7212512	A	G	3743.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	4714021	rs3081314	G	GGAAA	9333.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.21;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	4720131	rs2302325	C	G	14092.77	.	AC=2;AF=1.00;AN=2;DB;DP=499;set=Intersection	GT:AD:AF:DP	1/1:1,496:1.00:497
chr17	4722133	rs3764900	C	T	12377.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr17	4722299	rs2326097	T	C	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	4750573	rs9890271	G	A	1757.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	4758174	rs73341669	C	A	7503.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	4774476	rs148817521	AT	A	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.051;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=8.570;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.688;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:25,20:0.44:45
chr17	4778487	rs8078776	G	A	3983.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	4795307	rs2586532	C	T	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	4796521	rs3815382	T	G	9680.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:1,374:1.00:375
chr17	4799289	rs62073639	C	T	17077.77	.	AC=2;AF=1.00;AN=2;DB;DP=619;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr17	4836381	rs6065	C	T	17136.77	.	AC=2;AF=1.00;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr17	4837171	.	GGAGCCCACCTCAGAGCCCGCCCCCAGCCCGACCACCCCA	G	4355.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.27;MQRankSum=-0.224;QD=33.51;SOR=5.074;set=HC	GT:AD:AF:DP	1/1:1,129:0.99:130
chr17	4837952	rs199616811	A	AG	1375.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	4856376	rs238238	A	G	11355.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:2,421:1.00:423
chr17	4859102	.	T	TTGTCTCTGCTC	5280.73	.	AC=2;AF=1.00;AN=2;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	4859156	.	C	T	506	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=3;MGOF=50;MMLQ=28;MQ=61.68;NF=17;NR=17;PP=506;QD=15.9050356632;SC=CTGTCTCTGCCCTGTCTCTGC;SbPval=0.47;Source=Platypus;TC=63;TCF=30;TCR=33;TR=34;WE=4859175;WS=4859154;set=Platypus	GT:AD:AF:DP	0/1:29,34:0.54:63
chr17	4859156	.	CCTGTCTCTGCT	C	1021.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=8.034;MLEAC=1;MLEAF=0.500;MQ=62.22;MQRankSum=0.000;QD=31.93;ReadPosRankSum=-0.463;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:2,30:0.94:32
chr17	4863410	rs238224	A	G	12482.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr17	4870893	rs4790718	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	4875628	rs16942615	A	G	10438.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.44;SOR=1.268;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	4876327	rs72835097	T	C	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	4877120	rs238229	G	A	15280.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr17	4880320	rs16954309	T	C	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	4882952	rs1859434	G	A	5062.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.77;SOR=1.792;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	4883818	rs238234	C	G	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.06;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	4886037	rs238232	A	G	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	4890843	rs8071428	T	C	8713.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	4893357	rs427703	G	C	10743.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr17	4904376	rs72838327	T	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	4906146	rs146311497	GCC	G	2663.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr17	4907103	rs16954342	G	A	3314.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	4924097	rs4790725	C	G	10086.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	4936972	rs346821	G	A	18356.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr17	4937351	rs56126318	G	T	26666.77	.	AC=2;AF=1.00;AN=2;DB;DP=988;set=Intersection	GT:AD:AF:DP	1/1:0,985:1.00:985
chr17	4937575	rs346822	T	C	24143.77	.	AC=2;AF=1.00;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	1/1:0,915:1.00:915
chr17	4937967	rs16954357	C	T	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	4937982	rs346824	T	C	6219.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	5036205	rs80328123	A	C	1474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=4.339;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-11.669;QD=4.68;ReadPosRankSum=-1.705;SOR=1.004;set=HC	GT:AD:AF:DP	0/1:261,54:0.17:315
chr17	5036210	.	TC	GT	1534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.206;ClippingRankSum=0.000;DP=324;ExcessHet=3.0103;FS=5.256;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-11.705;QD=4.75;ReadPosRankSum=-0.615;SOR=1.058;set=HC	GT:AD:AF:DP	0/1:268,55:0.17:323
chr17	5036214	rs114647990	C	T	1712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=6.054;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-11.645;QD=4.96;ReadPosRankSum=-0.100;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:286,59:0.17:345
chr17	5036224	rs72830922	C	G	1895.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=1.540;MLEAC=1;MLEAF=0.500;MQ=59.30;MQRankSum=-11.255;QD=4.78;ReadPosRankSum=-0.429;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:321,76:0.19:397
chr17	5036274	rs78465432	C	A	2977.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-8.008;QD=7.09;ReadPosRankSum=1.946;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:325,95:0.23:420
chr17	5036281	rs76236903	G	C	3016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-7.587;QD=7.30;ReadPosRankSum=1.457;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:316,97:0.23:413
chr17	5036329	rs72830923	A	G	844.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=-5.193;QD=3.29;ReadPosRankSum=0.748;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:197,60:0.23:257
chr17	5036383	rs76207017	C	T	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.408;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-2.055;QD=2.70;ReadPosRankSum=-1.079;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr17	5039138	rs3213878	C	T	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.47;QD=26.98;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	5042715	rs61740308	G	A	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	5042837	rs61745111	C	T	3230.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	5042894	rs8073787	T	C	3253.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.45;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	5044640	.	T	TA	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.706;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.74;ReadPosRankSum=-1.010;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:147,47:0.24:194
chr17	5048207	rs2304447	A	G	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	5051848	rs112209972	T	C	14765.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr17	5066305	rs2307138	A	T	7259.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	5084763	rs1689965	G	A	22176.77	.	AC=2;AF=1.00;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	1/1:0,822:1.00:822
chr17	5118133	.	TAA	T	232.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=0.000;QD=16.62;ReadPosRankSum=1.606;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:2,12:0.86:14
chr17	5124352	rs137985713	C	CA	780.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=1.075;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.700;QD=9.64;ReadPosRankSum=1.154;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:21,60:0.74:81
chr17	5185664	rs11538946	T	C	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	5249998	rs11871517	G	A	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	5268337	rs57839578	A	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	5268356	rs58953748	TAA	T	1610.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:2,59:0.97:61
chr17	5280440	rs3026101	T	C	12155.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr17	5283617	rs11868032	A	T	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	5284480	rs3026109	T	C	1600.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	5284543	rs56804522	TAA	T	4016.73	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:2,153:0.99:155
chr17	5284698	rs1143206	A	G	9120.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	5284719	rs1065482	T	C	8946.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr17	5284770	rs1065483	G	A	8677.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	5289580	rs11209	A	G	13375.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr17	5289676	rs1806222	C	T	2607.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	5289865	rs67634045	CAT	C	3691.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	5290033	rs1071705	T	C	13342.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr17	5290681	rs739767	A	C	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	5290703	rs739768	G	A	3811.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	5290824	rs748486	C	A	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	5291276	rs142820374	AAAAT	A	2078.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	5294976	rs14231	T	A	6466.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	5295001	rs2285748	A	G	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	5298320	rs1806240	C	T	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	5298396	rs2309372	G	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	5302778	rs12602074	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	5308377	rs2301739	C	T	4726.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	5308603	rs3026133	G	A	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	5312271	rs929262	A	G	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	5314263	rs1806255	G	C	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	5317276	rs149115747	A	C	6187.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr17	5317492	rs1806263	C	A	3270.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	5319748	rs1806264	A	C	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	5320044	rs1806265	T	A	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	5320082	rs35036161	C	CT	1285.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	5326162	rs2189336	G	A	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	5328659	.	CT	C	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.043;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=1.568;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.378;QD=1.47;ReadPosRankSum=1.184;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:115,42:0.27:157
chr17	5358671	rs11867311	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	5366947	rs8069315	G	A	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	5367024	rs11286147	GA	G	441.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.516;QD=12.28;ReadPosRankSum=-1.403;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:5,31:0.86:36
chr17	5372259	rs28372907	G	A	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	5386025	rs1805456	A	G	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	5388568	rs16710	T	TCAAC	3436.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	5392161	rs929261	C	T	8296.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	5404262	rs872569	G	C	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.99;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	5404270	rs55910638	C	T	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	5405341	rs3809845	G	C	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	5485367	rs12150220	A	T	2813.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	5998691	rs41314095	C	G	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	6014176	rs2302837	A	G	7966.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	6330068	rs2292546	T	C	18918.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,728:1.00:728
chr17	6330153	rs925616	C	T	14022.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr17	6330403	rs925615	A	G	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	6371738	rs35021251	A	G	6270.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	6373737	rs11654175	C	T	13815.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr17	6374779	rs9902425	T	C	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	6377668	rs11078632	C	A	3310.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr17	6381939	rs938288	G	A	10583.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr17	6387482	rs11656015	G	C	7267.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr17	6406883	rs3809835	C	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	6441164	rs165106	T	C	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	6493056	rs367918	T	C	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	6538355	rs2301873	G	A	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	6544421	rs142294143	G	A	3537.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	6545702	rs9909640	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	6546259	rs2285999	T	C	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	6553583	rs2301874	G	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	6555546	rs56268735	C	CG	30488.73	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,858:1.00:858
chr17	6596497	.	AACAC	A	573.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.43;ReadPosRankSum=-0.097;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:35,20:0.36:55
chr17	6659324	rs3785793	A	G	1576.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	6661584	rs4796550	T	C	1664.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	6662320	rs67528158	G	T	2677.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	6662948	.	GGT	G	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.974;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.043;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:27,9:0.25:36
chr17	6663144	rs71157213	CT	C	3839.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	6663666	rs34269001	C	CAA	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.068;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.16;ReadPosRankSum=1.068;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr17	6663895	rs2271231	C	G	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	6683215	rs4796555	C	T	12486.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:1,464:1.00:465
chr17	6690858	.	C	CT,CTT	815.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.651;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=16.99;ReadPosRankSum=0.820;SOR=1.569;set=HC	GT:AD:AF:DP	1/2:4,30,14:0.62,0.29:48
chr17	6704071	rs17804647	G	A	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	6716385	rs8081510	T	C	5171.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	6718429	rs55935995	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	6719020	rs7213619	A	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	6733672	rs8078571	T	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	6899559	rs312467	C	G	2839.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	6899629	rs3218667	C	T	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	6900362	rs2070589	C	T	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	6900383	rs312468	T	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	6902179	rs312470	G	A	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	6902743	rs1042356	G	A	11156.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr17	6902760	rs1126667	A	G	10117.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr17	6903537	rs2292353	G	A	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	6905061	rs1042357	T	G	18987.77	.	AC=2;AF=1.00;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	1/1:0,720:1.00:720
chr17	6906085	rs11571338	C	CT	735.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	6908793	rs35201122	C	CT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=-0.000;DB;DP=36;ExcessHet=3.0103;FS=5.756;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=-0.763;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr17	6909377	rs371982623	GCC	GC,G	57.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=97;set=Intersection	GT:AF:DP	0/1:0.45:11
chr17	6909378	rs5819132	C	T	53.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.963;ClippingRankSum=-0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.000;QD=3.84;ReadPosRankSum=-1.109;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr17	6909379	.	C	T	297.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.000;QD=27.07;ReadPosRankSum=1.383;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr17	6915401	rs2271316	C	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	6919093	rs14309	T	C	10246.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:1,399:1.00:400
chr17	6927350	rs312461	A	G	3116.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	6928019	rs146207245	C	CCAG	9666.73	.	AC=1;AF=0.500;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	0/1:40,409:0.91:449
chr17	6929924	rs379478	T	C	14686.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr17	6933217	rs421264	T	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	6942108	rs11078663	C	T	25674.77	.	AC=2;AF=1.00;AN=2;DB;DP=968;set=Intersection	GT:AD:AF:DP	1/1:0,965:1.00:965
chr17	6943266	rs4796576	G	A	3730.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	6979179	rs364569	A	G	24162.77	.	AC=2;AF=1.00;AN=2;DB;DP=913;set=Intersection	GT:AD:AF:DP	1/1:0,911:1.00:911
chr17	6979218	rs3830425	AATAGG	A	29688.73	.	AC=2;AF=1.00;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr17	6981353	rs732828	G	C	23126.77	.	AC=2;AF=1.00;AN=2;DB;DP=902;set=Intersection	GT:AD:AF:DP	1/1:4,868:1.00:872
chr17	6981397	rs90951	A	G	14528.77	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,544:1.00:544
chr17	7005553	rs201398857	G	C	8966.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	7080111	rs34652175	TCA	T	7680.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.237;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.634;QD=26.30;ReadPosRankSum=-0.877;SOR=0.613;set=HC	GT:AD:AF:DP	1/1:19,273:0.93:292
chr17	7095090	rs2586539	C	G	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	7111624	rs178471	T	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	7121785	rs2521985	T	C	4599.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	7123240	rs139223575	T	TGGGCGTGCAGGACGC	9405.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	7124768	.	T	C	412	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=2;HapScore=2;MGOF=207;MMLQ=28;MQ=62.32;NF=24;NR=4;PP=412;QD=15.9561147338;SC=CTGCCCTAGGTCAGGAACTGC;SbPval=0.57;Source=Platypus;TC=28;TCF=24;TCR=4;TR=28;WE=7124776;WS=7124763;set=Platypus	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	7127718	rs17671352	T	C	13144.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr17	7128292	rs148584617	G	A	15431.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr17	7129840	rs35594616	T	C	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	7129974	rs2074222	A	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	7132556	rs222837	C	T	15317.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr17	7133162	rs222836	G	A	7071.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	7133609	rs2074216	G	A	18600.77	.	AC=2;AF=1.00;AN=2;DB;DP=677;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr17	7134129	rs222835	A	G	24371.77	.	AC=2;AF=1.00;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	1/1:0,934:1.00:934
chr17	7143994	rs17710	A	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	7145492	rs58574748	C	CA	11134.73	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr17	7150552	rs2074217	A	G	7746.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr17	7154534	rs414206	G	A	26983.77	.	AC=2;AF=1.00;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	1/1:0,1018:1.00:1018
chr17	7155861	rs2521988	G	A	7599.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr17	7156186	rs2074218	A	G	17104.77	.	AC=2;AF=1.00;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr17	7156447	rs2074219	A	G	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	7158203	rs402514	T	G	23849.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	1/1:8,885:0.99:893
chr17	7158258	rs55999520	GT	G	2956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=0.000;DB;DP=372;ExcessHet=3.0103;FS=6.526;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.731;QD=11.16;ReadPosRankSum=0.211;SOR=1.209;set=HC	GT:AD:AF:DP	0/1:45,220:0.83:265
chr17	7163739	rs4562	A	G	11830.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr17	7165395	rs56219105	CG	C	6669.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	7185092	rs5418	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	7185788	rs222848	T	C	19735.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr17	7185861	rs222849	T	C	23871.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,896:1.00:896
chr17	7187123	rs5435	T	C	13317.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr17	7192091	rs222842	C	T	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr17	7192198	rs222841	T	G	4291.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	7193055	rs3833134	GA	G	6678.73	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	7193060	rs55781423	A	G	6687.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	7193448	rs222838	A	G	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,407:1.00:407
chr17	7194010	rs2521992	C	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	7197794	rs222859	C	A	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	7225425	rs2062771	T	C	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:2,183:0.99:185
chr17	7286326	rs1554948	T	A	13863.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr17	7292107	rs6503018	G	A	11325.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr17	7293715	rs3744549	C	T	10409.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr17	7297452	rs4613118	A	G	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	7307103	rs56134360	ACC	A	5249.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	7307287	rs9900153	T	C	32342.77	.	AC=2;AF=1.00;AN=2;DB;DP=1230;set=Intersection	GT:AD:AF:DP	1/1:0,1225:1.00:1225
chr17	7317647	rs60631713	A	AC	6989.73	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	7318396	rs2241233	C	T	12277.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	7318559	rs6503019	G	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	7318935	rs12947017	C	T	17867.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,674:1.00:674
chr17	7321067	rs62061175	C	T	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	7326835	.	CA	C	64.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.828;QD=0.70;ReadPosRankSum=0.137;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:70,23:0.25:93
chr17	7329632	rs13290	T	G	31530.77	.	AC=2;AF=1.00;AN=2;DB;DP=1217;set=Intersection	GT:AD:AF:DP	1/1:1,1210:1.00:1211
chr17	7345819	rs4151129	A	AGGTAC	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	7346302	rs3853818	T	C	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	7348625	rs17856697	A	G	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:2,486:1.00:488
chr17	7350544	rs2302767	G	A	16707.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,619:1.00:619
chr17	7358803	rs7214344	G	A	2200.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	7358861	rs2302762	T	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	7358930	rs56074046	G	A	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	7359368	.	CTTTTTTTTTTTT	C	1677.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.111;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=5.195;MLEAC=2;MLEAF=1.000;MQ=60.47;MQRankSum=0.457;QD=34.24;ReadPosRankSum=2.004;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:2,47:0.96:49
chr17	7385174	rs8065577	G	C	2387.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	7400041	rs9890920	C	T	7726.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	7400137	rs9898024	T	C	16010.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr17	7400815	rs2228128	T	C	12908.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr17	7401335	rs111845660	G	GGCTCTGGGGT	13381.73	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr17	7401572	rs41554719	A	T	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	7402556	rs2277638	G	A	19011.77	.	AC=2;AF=1.00;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr17	7402600	rs2228129	T	C	20170.77	.	AC=2;AF=1.00;AN=2;DB;DP=777;set=Intersection	GT:AD:AF:DP	1/1:2,773:1.00:775
chr17	7403942	rs12936464	A	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	7404107	rs7217707	T	C	19569.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr17	7404209	rs6503030	G	A	12102.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,446:1.00:446
chr17	7404991	rs2228130	T	C	10253.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	7405074	rs8075218	C	T	7350.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	7406343	rs9890028	T	C	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	7411855	rs4796432	A	G	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	7412212	rs9889368	A	G	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	7413038	rs2269459	A	G	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	7413057	rs7213878	C	T	5480.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	7413120	rs7218412	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	7414958	rs2071502	G	C	1724.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	7415938	rs372868121	C	T	4078.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	7416683	rs9894023	A	G	90991.77	.	AC=2;AF=1.00;AN=2;DB;DP=3591;set=Intersection	GT:AD:AF:DP	1/1:44,3535:0.99:3579
chr17	7417086	rs4344809	G	A	59495.77	.	AC=2;AF=1.00;AN=2;DB;DP=2238;set=Intersection	GT:AD:AF:DP	1/1:0,2231:1.00:2231
chr17	7417551	rs9533	T	C	8784.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr17	7452752	rs80067372	G	A	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr17	7453505	rs62059804	C	A	11839.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,449:1.00:449
chr17	7460559	rs4968189	T	G	11810.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr17	7462969	rs3803800	A	G	7389.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	7470285	rs58837213	CA	C	12719.73	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr17	7474277	rs4968213	C	T	2354.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	7474539	rs28625968	C	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	7477938	rs1057086	G	C	1497.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	7554772	rs1642762	C	T	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	7557419	rs1642763	A	G	23289.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,873:1.00:873
chr17	7557834	rs1642764	C	T	4518.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	7569698	rs8073498	A	C	6465.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	7576443	.	C	CA	130.84	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=8.18;ReadPosRankSum=0.263;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,14:0.88:16
chr17	7578115	rs1625895	T	C	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	7578265	.	A	T	12358.77	.	AC=2;AF=1.00;AN=2;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr17	7578645	rs2909430	C	T	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	7578711	rs141204613	CTTT	C	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.93;QD=26.10;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:1,17:0.94:18
chr17	7579472	rs1042522	G	C	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	7579643	rs146534833	CCCCCAGCCCTCCAGGT	C	15243.73	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:2,496:1.00:498
chr17	7579801	rs1642785	G	C	7518.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=5.223;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=49.881;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.448;QD=18.29;ReadPosRankSum=2.323;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:25,386:0.94:411
chr17	7660622	rs62062621	C	G	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	7660676	.	C	CA	504.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.663;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.82;ReadPosRankSum=-1.309;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:2,28:0.93:30
chr17	7674850	rs7212989	C	T	1131.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	7677927	rs4791759	A	G	680.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	7680159	rs62059684	G	A	14396.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,547:1.00:547
chr17	7681412	rs7359662	C	G	10350.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr17	7700419	.	C	CA	84.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.748;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=3.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.958;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:22,13:0.37:35
chr17	7700712	rs1565817	C	T	28405.77	.	AC=2;AF=1.00;AN=2;DB;DP=1078;set=Intersection	GT:AD:AF:DP	1/1:0,1071:1.00:1071
chr17	7702357	rs12949280	C	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	7705089	rs4791834	C	G	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	7708096	rs9889268	G	A	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	7721030	rs872346	G	A	19054.77	.	AC=2;AF=1.00;AN=2;DB;DP=711;set=Intersection	GT:AD:AF:DP	1/1:0,708:1.00:708
chr17	7722365	rs7213894	C	T	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	7726612	rs34255363	C	CA	315.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.386;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.89;ReadPosRankSum=-2.144;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:13,27:0.68:40
chr17	7726665	rs55758061	C	CAG	3151.73	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:23,118:0.84:141
chr17	7733555	rs7405476	A	G	4117.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	7733833	rs34121753	A	G	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	7750177	rs61462443	T	TACCACC,TACCACCACC	12256.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;QD=44.41;SOR=6.796;set=HC	GT:AD:AF:DP	1/2:0,41,235:0.15,0.85:276
chr17	7750847	rs2270517	T	C	22985.77	.	AC=2;AF=1.00;AN=2;DB;DP=861;set=Intersection	GT:AD:AF:DP	1/1:0,859:1.00:859
chr17	7754993	rs12939056	G	A	13460.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr17	7788145	.	CGAG	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=7.624;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=1.560;SOR=2.437;set=HC	GT:AD:AF:DP	0/1:55,6:0.10:61
chr17	7788409	rs201772788	C	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	7797287	.	G	GGGGCCAAGGATCCAGAGACAGGGATCCGTGA	1769.73	.	AC=2;AF=1.00;AN=2;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=61.03;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	7804822	rs34660030	GT	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.498;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.170;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr17	7808773	.	G	C	109.77	.	AC=1;AF=0.500;AN=2;DP=33;set=Intersection	GT:AD:AF:DP	0/1:24,8:0.25:32
chr17	7811998	rs4239111	T	C	10157.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	7948175	rs6503070	C	T	11987.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr17	7950377	rs11541083	C	T	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	7950952	rs9898751	C	A	6820.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	7951819	rs4792147	A	G	11632.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr17	7960380	rs8072641	T	C	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	7960625	rs9896256	C	T	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	7961129	rs7214975	G	A	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	7977105	rs12937410	A	G	8286.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	7979463	rs2289586	A	G	26336.77	.	AC=2;AF=1.00;AN=2;DB;DP=989;set=Intersection	GT:AD:AF:DP	1/1:0,986:1.00:986
chr17	7983799	rs2304907	A	G	6515.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	7983969	rs2304908	G	C	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	7990555	.	GAC	GACACACACAC,G	2992	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=31;MMLQ=23;MQ=61.46;NF=87,87;NR=39,39;PP=2992,1925;QD=20;SC=GACACACACAGACACACACAC;SbPval=0.86;Source=Platypus;TC=176;TCF=107;TCR=69;TR=126,126;WE=7990564;WS=7990541;set=Platypus	GT:AF:DP	0/1:0.72:176
chr17	7990567	.	C	CACACACAG	872.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.571;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=12.309;MLEAC=1;MLEAF=0.500;MQ=62.81;MQRankSum=8.159;QD=4.28;ReadPosRankSum=2.528;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:147,57:0.28:204
chr17	7990577	rs7504003	G	C	7711.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.673;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.81;MQRankSum=0.805;QD=35.70;ReadPosRankSum=0.183;SOR=0.651;set=HC	GT:AD:AF:DP	1/1:2,214:0.99:216
chr17	7991330	rs9909784	T	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.96;SOR=5.453;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	7991628	rs9903712	C	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=27.81;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	7991630	.	C	CAA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.251;QD=3.19;ReadPosRankSum=1.246;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:16,9:0.36:25
chr17	8015579	rs894505	G	C	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	8027593	rs3027279	G	T	5935.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	8045028	rs59587156	CT	C	4787.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=9.890;MLEAC=2;MLEAF=1.000;MQ=59.69;MQRankSum=-0.108;QD=40.92;ReadPosRankSum=-0.133;SOR=4.360;set=HC	GT:AD:AF:DP	1/1:1,116:0.99:117
chr17	8045060	.	CT	C	2975	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=8;HapScore=1;MGOF=5;MMLQ=25;MQ=59.43;NF=91;NR=147;PP=2975;QD=20;SC=GAGCTCAATTCTTTTTTCTCC;SbPval=0.59;Source=Platypus;TC=265;TCF=104;TCR=161;TR=238;WE=8045068;WS=8045050;set=Platypus	GT:AD:AF:DP	1/1:27,238:0.90:265
chr17	8045061	.	T	TTTTTTCTCCCCCTTGAACTTGAGCTCAATTC	12115.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;ClippingRankSum=0.000;DP=237;ExcessHet=3.0103;FS=4.808;MLEAC=2;MLEAF=1.000;MQ=59.84;MQRankSum=-0.076;QD=51.34;ReadPosRankSum=-1.367;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:1,235:1.00:236
chr17	8046772	rs2585405	C	G	5773.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.11;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	8048169	rs2253820	T	C	9136.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	8048283	rs2735611	G	A	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	8050737	rs885747	G	C	15770.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr17	8052525	rs147233293	CAAAAACA	C	2734.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.980;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=4.608;MLEAC=2;MLEAF=1.000;MQ=62.65;MQRankSum=1.487;QD=18.99;ReadPosRankSum=1.728;SOR=2.134;set=HC	GT:AD:AF:DP	1/1:6,138:0.96:144
chr17	8064083	rs1061032	T	G	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	8066107	rs2304909	G	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	8066376	.	G	GGCGGGGCGCTGCGGGGCGCTGCGGGGCGCTGCGGGGCGCT	531.73	.	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.08;QD=66.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8076778	rs9894790	C	T	4561.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	8076802	rs9901637	T	A	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	8076905	rs368446612	A	C	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.226;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.430;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.182;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:247,35:0.12:282
chr17	8076911	rs11655582	A	G	12837.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.58;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr17	8076916	rs11650713	C	T	12862.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	8079029	rs8064449	G	C	16843.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr17	8092694	rs8531	T	G	12439.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:1,439:1.00:440
chr17	8108331	rs1059476	A	G	18028.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.63;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,404:1.00:404
chr17	8108339	rs2241909	G	A	18270.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.03;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,415:1.00:415
chr17	8110764	rs2289590	C	A	2861.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	8132763	rs3826543	T	C	3796.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	8135061	rs3027238	T	C	8935.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	8137737	rs4792621	G	A	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	8139327	rs4791626	A	G	19403.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr17	8141707	rs6503093	T	C	11044.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr17	8151178	rs12946837	G	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:1,92:0.99:93
chr17	8151415	.	T	G	1283	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=12;HapScore=2;MGOF=5;MMLQ=22;MQ=57.48;NF=0;NR=52;PP=1283;QD=25.3417540874;SC=GGGATGGGGGTGGGGGGGCGC;SbPval=1.0;Source=Platypus;TC=97;TCF=36;TCR=61;TR=52;WE=8151423;WS=8151395;set=Platypus	GT:AD:AF:DP	1/0:45,52:0.54:97
chr17	8157310	rs9891699	C	T	21765.77	.	AC=2;AF=1.00;AN=2;DB;DP=806;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr17	8158273	rs6503094	A	G	7856.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	8159232	rs7221716	A	G	3157.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	8161149	rs4791641	C	T	4134.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	8166378	rs7206953	T	C	9125.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	8167600	rs11078738	T	C	12730.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr17	8168224	rs9902252	T	C	3110.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	8168805	rs9897842	A	G	10267.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	8169006	rs11655563	T	C	8576.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	8193473	rs11245	G	A	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	8194318	rs72835272	GT	AC	16379.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr17	8275001	rs2909439	C	T	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	8275023	rs1004151	T	G	214.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	8283379	rs409445	C	G	3170.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	8296383	rs12601362	C	T	5133.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	8296440	rs12601265	G	A	4265.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	8339103	rs8065181	C	T	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	8339283	rs3744652	C	T	6113.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.46;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	8339307	rs8064417	G	A	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	8349984	rs369297844	T	TC	1214.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	8381652	rs72841802	G	A	7144.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	8383253	rs4791316	G	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	8383344	rs3215073	G	GC	4935.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,165:0.99:166
chr17	8383894	rs6503120	A	G	6660.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	8384875	rs904417	T	G	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	8387438	rs113838551	G	GATGA	12634.73	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	8390655	rs7219356	C	T	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	8393900	rs2270744	G	C	7357.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	8393979	rs2270743	C	T	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	8395894	rs904416	T	C	6773.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.00;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	8395949	.	CTTT	C	203.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=4.301;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=1.171;SOR=1.828;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr17	8396010	rs3744653	A	G	2096.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	8397315	rs2277670	C	T	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	8412133	rs9889907	A	G	1745.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	8413358	rs145464629	A	ATT	2279.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.065;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=3.489;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=20.00;ReadPosRankSum=0.799;SOR=1.512;set=HC	GT:AD:AF:DP	0/1:14,100:0.88:114
chr17	8416901	rs11374	C	T	7476.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	8417006	rs66631876	GT	G	4484.73	.	AC=1;AF=0.500;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	0/1:61,287:0.82:348
chr17	8424270	rs8067456	G	A	11851.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	8449716	.	T	TA	89.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=4.681;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.943;SOR=0.227;set=HC	GT:AD:AF:DP	0/1:72,20:0.22:92
chr17	8449767	rs4791724	A	G	6126.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	8451744	rs57472344	GA	G	1361.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8455532	rs883811	G	A	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	8473182	rs422173	G	A	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	8478586	rs10573578	CAAT	C	4010.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	8478605	rs268460	C	T	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=26.65;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	8647127	rs9895426	C	T	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	8647181	rs9902109	T	C	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	8647337	rs7218546	A	G	6247.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	8647931	rs10852904	G	C	15515.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr17	8701116	rs2242374	G	A	21030.77	.	AC=2;AF=1.00;AN=2;DB;DP=761;set=Intersection	GT:AD:AF:DP	1/1:0,757:1.00:757
chr17	8701799	rs17854013	G	T	13830.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	8725214	rs56322041	A	AG	19007.73	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr17	8726160	rs2074258	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	8784361	rs4791765	A	G	6327.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	8784900	rs376963225	C	CAGTA	12931.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	8790074	rs11078770	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	8792003	rs9915880	C	T	15620.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr17	8792029	rs381309	A	G	15565.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr17	8792093	rs16957702	G	A	17495.77	.	AC=2;AF=1.00;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr17	8792171	rs11650737	T	C	13928.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr17	8792326	rs11654380	C	T	2050.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	8792371	rs11654094	G	A	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	8792514	rs394811	G	A	7571.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	8793905	rs365024	T	C	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	8794002	rs364676	T	C	6636.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.84;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	8794009	rs61759652	T	A	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	8794014	rs381198	A	G	7483.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.26;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	8809075	rs92535	G	A	3043.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	8809148	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=1.447;QD=1.79;ReadPosRankSum=0.477;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr17	8812613	.	C	CT	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.540;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=2.636;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=0.312;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr17	9086338	rs11078789	G	T	9995.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.339;set=HC	GT:AD:AF:DP	1/1:0,381:1.00:381
chr17	9086712	rs56113014	C	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	9154103	rs2072322	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	9395033	rs6503214	A	G	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	9395231	rs9893664	G	A	1804.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.94;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	9408290	.	C	CAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAA	775.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=37;set=Intersection	GT:AF:DP	1/1:1.00:5
chr17	9471711	rs1133295	T	G	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	9479048	rs7210038	T	C	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	9479098	rs7224817	C	A	9479.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr17	9479364	rs6503230	T	C	2245.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	9515777	rs6503235	G	A	9202.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	9712092	rs56256681	G	A	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	9712255	rs9908677	G	A	7235.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	9714009	rs4079466	C	A	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	9764531	rs2001486	A	G	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.79;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	9764547	rs12150176	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	9765514	rs12150273	G	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	9768941	rs756224	A	G	2775.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	9774057	rs17810279	T	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	9783566	rs4791903	G	C	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	9783855	rs2277690	A	G	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	9791375	rs17676067	T	C	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	9792768	rs17681684	G	A	6160.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	9792872	rs17681708	T	C	4757.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	9793240	rs17681738	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.79;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	9793417	rs55789050	A	T	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	9801316	.	T	TGTGTGTGTGC,TGTGTGTGC	829.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=30;set=Intersection	GT:AF:DP	1/1:0.92:26
chr17	9801351	rs17744264	A	G	2652.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	9801370	rs16958933	A	G	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	9801532	rs76286617	G	C	5345.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.98;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	9801635	rs62064489	A	G	1945.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	9820695	rs4791910	C	T	7839.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	9820739	rs11078821	A	G	4775.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	9821249	rs11078822	C	T	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	9821614	rs61532416	G	GA	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	9821618	rs55976773	T	G	1996.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	10204401	rs76865302	C	T	709.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	10205047	rs62060457	C	G	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	10205067	rs2008528	C	T	3910.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	10214628	rs2074867	C	T	4447.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	10216442	rs4239113	C	A	3361.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	10219113	rs17690195	C	T	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	10219366	rs2240577	C	T	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	10219470	rs2240578	A	T	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	10223714	rs2074877	T	C	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	10227708	rs3826442	C	T	1133.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	10231498	rs2277645	A	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	10235360	rs8064714	G	C	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	10236465	rs2240579	G	A	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	10243589	rs4445936	C	A	5408.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	10243717	rs3760423	G	A	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	10247544	rs12453187	C	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	10249888	rs34168540	G	GA	2202.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	10254197	rs2108568	A	G	2035.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	10258153	rs3214260	GT	G	4096.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	10258155	rs5010940	T	C	4105.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	10297658	rs8069834	A	G	2617.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.768;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=3.052;MLEAC=2;MLEAF=1.000;MQ=59.38;MQRankSum=-0.251;QD=24.93;ReadPosRankSum=0.796;SOR=0.284;set=HC	GT:AD:AF:DP	1/1:1,104:0.99:105
chr17	10303144	rs3815314	G	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	10304261	rs3744552	G	A	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	10308043	rs10567598	TACAC	T,TAC	2258.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.07;SOR=1.877;set=HC	GT:AD:AF:DP	1/2:0,9,46:0.16,0.84:55
chr17	10318636	rs8068729	A	G	2294.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	10357281	rs3826444	T	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	10359782	rs970292	A	G	5216.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	10400963	rs723903	C	G	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	10411253	rs150346984	C	T	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	10411322	.	G	GT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=3.439;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.000;QD=0.89;ReadPosRankSum=0.004;SOR=1.184;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr17	10415840	rs2007027	A	G	6387.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	10424897	.	CAT	C	135.73	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr17	10426343	rs7223755	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	10435325	rs11379780	G	GA	1018.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	10532884	rs12940161	G	A	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	10533595	rs3216886	C	CT	4106.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	10536018	rs2285479	G	A	5078.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.124;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.31;ReadPosRankSum=0.695;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:2,191:0.99:193
chr17	10536184	rs2285478	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	10541441	.	C	T	2838.77	.	AC=1;AF=0.500;AN=2;DP=218;set=Intersection	GT:AD:AF:DP	0/1:87,129:0.60:216
chr17	10541515	rs2285477	C	T	6140.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	10542471	rs2285475	T	G	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	10542765	rs2285474	A	G	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	10542803	rs2285473	T	C	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	10542886	rs2285472	T	C	1059.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	10543183	rs2285471	A	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	10543218	rs2285470	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	10543281	rs138188093	TAA	T	1064.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;QD=25.35;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:2,40:0.95:42
chr17	10543463	rs2285469	T	C	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	10544018	rs876660	T	C	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	10544416	rs876657	G	T	859.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	10544696	rs3216884	GA	G	709.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:4,39:0.91:43
chr17	10545432	rs3216883	C	CAGTA	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	10545560	.	G	A	593.77	.	AC=1;AF=0.500;AN=2;DP=91;set=Intersection	GT:AD:AF:DP	0/1:57,33:0.37:90
chr17	10546130	rs2285468	T	G	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	10549184	rs2239933	G	A	6691.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	10550845	rs142213434	TTTTTG	T	1320.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	10553046	rs1989810	A	G	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	10555028	rs2285466	G	A	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	10555061	rs71360285	A	G	215.81	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.176;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.69;ReadPosRankSum=0.970;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr17	10555062	rs150760312	TTG	T	206.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=0.970;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:2,15:0.88:17
chr17	10595388	rs2520178	A	G	3107.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	10633245	rs202312	T	C	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;QD=25.55;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	10633321	.	C	CG	894.73	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	11459012	rs1030055	G	C	2425.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	11502403	rs8079566	G	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	11511412	rs4792156	A	G	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	11513661	rs2191072	C	T	1240.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	11522764	rs10852799	G	A	1962.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	11523082	rs9892256	A	G	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	11555990	rs4792159	T	C	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	11583089	rs8071438	T	C	6481.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	11604598	rs7214186	T	A	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	11622494	rs12945437	A	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	11648332	rs3744578	C	T	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	11648444	rs3744580	T	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	11660722	rs11078030	G	T	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	11772285	rs59647695	C	T	1275.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	11778240	rs7211854	G	A	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	11786951	rs8070256	T	C	3516.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.26;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	11787936	rs11868929	A	G	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	11787975	rs11078042	T	C	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	11806266	rs3815269	T	C	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	11827353	rs2286300	T	C	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=1.088;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	11833287	rs2286303	A	G	15404.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:1,592:1.00:593
chr17	11833365	rs1859887	G	A	13329.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr17	11835331	rs17612861	G	A	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	11837161	rs12948962	T	C	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	11840528	rs2240521	A	C	1317.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	11886542	rs34660389	C	T	1567.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	11886864	rs17613212	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	11887518	.	GAA	G,GA	2122.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.857;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.19;MQRankSum=0.734;QD=13.10;ReadPosRankSum=2.174;SOR=0.811;set=HC	GT:AD:AF:DP	1/2:22,61,79:0.38,0.49:162
chr17	11894195	rs35075542	C	T	755.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	11985459	.	T	TA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257;ClippingRankSum=0.000;DP=112;ExcessHet=3.0103;FS=1.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-0.892;SOR=0.441;set=HC	GT:AD:AF:DP	0/1:69,18:0.21:87
chr17	12620761	rs12944823	A	G	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	12620897	rs12602716	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	12647490	rs12709295	T	C	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	12664177	rs16946572	T	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	12799985	rs2302068	G	A	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	12820421	rs35221864	T	C	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	12820632	rs12451747	A	C	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	12852392	rs2072255	G	A	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=1.119;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	12852459	rs2072254	A	G	3088.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.32;ReadPosRankSum=-0.553;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:2,120:0.98:122
chr17	12855719	rs2072253	G	A	1966.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	12856005	rs2072252	A	G	671.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	12859125	rs3214256	C	CG	2666.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	12860183	rs10602009	AACACAC	A	1411.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr17	12862309	rs11868628	T	C	2763.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	12862359	rs9904572	G	A	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	12897293	rs9915058	A	C	892.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	12917607	.	CA	C	120.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.06;ReadPosRankSum=0.980;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:2,10:0.83:12
chr17	13399486	rs67951062	A	ATTT	5630.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.340;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;MQRankSum=0.000;QD=33.32;ReadPosRankSum=-1.386;SOR=0.569;set=HC	GT:AD:AF:DP	1/1:9,160:0.95:169
chr17	13400153	rs8080565	G	A	9816.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	13446924	rs9913045	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.63;QD=25.48;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	13504474	rs73298111	C	T	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	13928093	rs62052313	G	A	4920.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.89;MQRankSum=-0.531;QD=20.42;ReadPosRankSum=4.031;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:24,217:0.90:241
chr17	13928124	rs199806452	A	G	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	13928438	rs149300708	A	G	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.55;QD=23.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	13972811	rs6502330	G	A	770.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	13977813	rs143814384	C	CTTTA	1914.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	14005373	rs1017076	C	T	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	14005386	rs2108683	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	14005439	rs2159132	G	A	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	14005647	rs3217030	C	CAT	543.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	14063389	rs7212977	G	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	14095639	rs373313742	A	G	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=4.584;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-13.904;QD=2.00;ReadPosRankSum=-4.315;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:222,52:0.19:274
chr17	14139414	rs146117581	C	G	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.35;QD=28.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	14139565	rs4791563	T	C	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:20,25:0.56:45
chr17	14139774	rs4791564	C	A	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.14;QD=27.11;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	14139891	rs62052131	A	C	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;QD=25.08;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	14140103	rs4792453	A	G	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	14248423	rs9906855	T	C	3172.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	14683545	rs62060073	G	A	117.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	15222535	rs11387328	C	CA	340.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	15234232	rs2305959	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	15234895	rs7226363	C	T	4113.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.003;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	15341022	rs2954757	TT	GC	3292.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	15341183	rs2954759	A	C	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	15342590	rs10707095	TA	T	2311.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	15342606	rs2906987	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	15342653	rs2954761	C	T	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	15343524	rs71150251	C	CCTT	7877.73	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	15343740	rs2954764	T	C	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	15406123	rs71974269	CCTCT	C	1948.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;QD=41.46;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	15458684	rs139274207	T	A	3254.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.77;QD=30.71;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	15468718	rs200463402	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:19,34:0.64:53
chr17	15468765	.	CA	C	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.431;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-6.763;QD=1.34;ReadPosRankSum=-0.113;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:90,36:0.29:126
chr17	15492409	rs151442	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.64;QD=30.49;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	15492426	rs28445278	C	T	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	15508447	rs2190757	C	A	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.21;MQRankSum=-3.713;QD=1.12;ReadPosRankSum=0.012;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr17	15602900	rs2601942	T	G	429.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr17	15602950	rs12449956	G	T	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr17	15603021	rs12452845	T	C	2867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.360;MLEAC=1;MLEAF=0.500;MQ=53.82;MQRankSum=-8.539;QD=20.93;ReadPosRankSum=2.513;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:61,76:0.55:137
chr17	15603031	rs12450403	G	T	2759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=3.020;MLEAC=1;MLEAF=0.500;MQ=53.73;MQRankSum=-9.270;QD=19.71;ReadPosRankSum=2.600;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:68,72:0.51:140
chr17	15603114	rs62071712	G	T	275.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:61,16:0.21:77
chr17	15604395	rs77257979	TG	CA	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	15604444	rs4792655	A	G	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	15607777	rs62071718	A	G	2901.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:1,109:0.99:110
chr17	15620481	rs2530064	C	T	3004.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.33;QD=27.57;SOR=1.813;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	15620647	rs61435333	G	A	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.06;QD=25.76;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	15620679	rs58734516	G	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.08;QD=23.43;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	15640815	rs201215351	A	G	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.06;QD=24.92;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	15643382	rs11429009	A	AC	4501.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;MQRankSum=-0.599;QD=19.24;ReadPosRankSum=1.476;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:8,226:0.97:234
chr17	15644392	rs7222367	T	C	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	15668330	rs2955833	G	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	15668720	rs935147	C	G	1460.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	15668775	rs1814454	A	G	2559.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	15690210	rs376068178	AC	A	879.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.05;QD=29.32;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	15884227	rs2286796	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	15884561	rs10491104	C	T	366.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	15903602	rs758853	C	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	15905190	rs3760298	A	G	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	15907084	.	CAT	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.901;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=-0.318;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:25,5:0.17:30
chr17	15909728	rs3760297	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	15928584	rs2301652	T	G	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	15928600	rs2301651	G	C	377.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	15930087	rs35168566	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	15943910	rs1075901	T	C	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	15950198	rs1079533	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	15961951	rs2157991	A	G	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	15961993	rs2157990	T	A	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	15968143	rs2285583	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	15973844	rs12942295	A	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.082;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	15974579	.	GAA	G	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.62;ReadPosRankSum=0.257;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr17	15977005	rs11078330	A	T	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	16004537	rs62073621	G	A	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	16005187	rs2285580	T	C	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	16011493	.	CAA	C,CA	322.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.37;ReadPosRankSum=0.496;SOR=0.569;set=HC	GT:AD:AF:DP	1/2:1,11,9:0.52,0.43:21
chr17	16024701	rs11410605	C	CA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.79;ReadPosRankSum=2.042;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chr17	16041578	.	T	TA	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.370;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=1.035;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr17	16041636	rs2875265	T	C	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	16046845	rs2285579	A	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	16049626	rs11078333	A	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=21.28;SOR=1.552;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	16052606	rs71299857	C	CATATAT	673.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=33.69;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	16185248	rs3785626	T	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	16221271	rs56228407	A	AC	2176.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	16221319	rs9890539	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	16229232	rs15739	A	G	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	16246016	rs7477	A	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	16248083	rs9907546	T	A	1299.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.65;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	16251859	rs2286666	A	G	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	16256240	rs3095172	C	A	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	16323589	rs4273076	C	A	9243.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	16323608	rs68189233	ATAGT	A	8079.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	16734809	rs2688010	A	G	4063.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.55;QD=27.27;SOR=1.355;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	16734869	rs62074145	A	G	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.91;QD=26.73;SOR=1.323;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	16734971	rs62074146	A	T	109.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.88;QD=27.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	16855878	rs8072293	C	T	11704.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr17	17122286	rs8065572	C	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	17152363	rs11336908	GA	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=2.290;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.42;ReadPosRankSum=0.262;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr17	17158128	rs71152853	G	GA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=5.579;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=1.33;ReadPosRankSum=0.940;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:60,20:0.25:80
chr17	17165012	rs72321449	G	GA	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.060;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=2.094;QD=0.64;ReadPosRankSum=0.585;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:68,17:0.20:85
chr17	17326363	rs35590625	G	A	8929.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	17326604	rs7225976	CA	TG	18276.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	17682484	rs1006656	G	A	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.67;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	17697093	rs371983878	CCAG	C	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;ClippingRankSum=0.000;DB;DP=423;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=1.500;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:279,46:0.14:325
chr17	17698254	rs8067439	G	A	16035.77	.	AC=2;AF=1.00;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr17	17707105	rs3818717	T	C	15064.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	1/1:1,554:1.00:555
chr17	17715317	rs2297508	C	G	2547.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	17721457	rs4925115	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	17726965	rs12936927	C	T	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	17740164	rs60282872	GC	G	5700.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.18;QD=35.19;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	17750907	rs7501812	G	A	1127.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	17767526	rs34383547	A	AT	564.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.66;ReadPosRankSum=-0.090;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,41:0.77:53
chr17	17770355	rs11657074	G	A	1345.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	17772622	rs34879782	G	GA	953.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.261;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.35;ReadPosRankSum=-1.447;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:31,71:0.70:102
chr17	17774118	rs9907287	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	17931884	.	C	CA	179.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.266;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.342;QD=1.73;ReadPosRankSum=-1.523;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr17	17948475	rs2955355	G	A	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	18003648	rs854814	G	A	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	18003671	rs2272570	T	G	2339.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	18005073	rs721669	A	G	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	18010001	rs10566746	GT	G	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-0.480;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:6,15:0.71:21
chr17	18022039	rs854818	A	C	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18023897	rs2955365	G	A	10020.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr17	18024013	rs2955366	A	G	5564.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	18024266	rs2955367	T	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=1.012;set=HC	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	18025744	rs712268	C	G	4152.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	18028318	rs854790	C	G	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	18029581	rs75573319	C	T	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	18029857	rs854791	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	18034131	.	AGT	A	231.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=3.453;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.648;QD=6.82;ReadPosRankSum=-0.022;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:18,16:0.47:34
chr17	18035644	rs16960927	G	A	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	18042276	rs2075658	A	C	7170.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	18042527	rs854783	A	G	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.795;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	18043766	rs854780	C	G	12916.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	18044270	rs854779	T	C	1607.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	18044893	rs11658477	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	18046058	rs854778	A	C	9312.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr17	18046290	rs8065026	T	C	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	18046898	rs854777	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	18047671	rs11421905	G	GC	1850.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	18047772	rs11421904	T	TC	8462.73	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	18051975	rs854774	T	C	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	18052466	rs4303606	A	G	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	18052867	rs2955379	T	C	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	18054868	rs854773	G	T	9250.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:2,342:0.99:344
chr17	18054917	rs865923	T	C	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	18055229	rs854772	G	A	4438.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	18057215	rs9916193	C	G	15705.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,593:1.00:593
chr17	18057272	rs712271	A	G	8932.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	18057301	rs735960	G	A	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	18057907	rs62073602	A	G	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	18063441	rs712273	T	C	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	18064730	rs8077577	C	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr17	18065888	rs62073604	T	C	5658.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	18066791	rs62073605	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	18070761	rs854796	G	A	3041.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	18077175	rs854800	T	C	9775.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr17	18088094	rs11078411	C	T	21326.77	.	AC=2;AF=1.00;AN=2;DB;DP=769;set=Intersection	GT:AD:AF:DP	1/1:0,769:1.00:769
chr17	18098180	rs17436616	C	G	1714.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	18111793	rs1563371	C	T	6382.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	18111868	rs1378602	G	A	6332.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr17	18144720	rs2245737	C	T	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	18148485	rs7498	G	A	8126.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	18149854	rs2856289	A	G	15521.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr17	18150444	.	AC	A	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-0.959;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr17	18151424	rs35738574	C	G	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	18154510	rs2071242	T	C	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	18156541	rs2071241	A	G	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	18161744	rs59366579	C	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	18167505	rs2605143	T	C	4728.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	18194011	rs3817992	C	A	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	18194362	rs6502645	C	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	18202996	rs2294913	C	T	8740.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	18208334	rs7225932	C	A	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	18211537	rs201230376	CAAAAAAAAAAAAAAAAA	C,CA	1673.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.70;QD=38.92;SOR=2.356;set=HC	GT:AD:AF:DP	1/2:0,30,13:0.70,0.30:43
chr17	18219835	rs3829956	T	C	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,294:0.99:296
chr17	18220770	rs1563632	G	A	7862.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	18221010	rs12449313	A	G	12341.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr17	18236339	rs2273029	G	A	8269.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	18243872	rs62072543	GC	AT	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	18252010	rs3866955	T	C	2195.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	18259415	rs12950117	A	G	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	18284262	rs570145	G	A	12998.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr17	18286916	rs112094897	A	AG	4691.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	18286922	rs111736884	A	AG	4776.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	18286930	rs200680358	A	AG	4597.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	18286938	rs145486982	A	AG	4427.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	18291432	rs140944304	TCACAGC	T	547.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.36;QD=42.13;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	18291456	rs578670	C	G	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.23;QD=45.92;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	18291470	rs586214	C	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	18291544	rs586322	A	G	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.81;QD=25.14;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	18291618	rs586757	C	T	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr17	18314913	.	T	TCTCCTCTCCCCATCGCCTTCTTCCCACCCTCTC	8247.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DP=777;ExcessHet=3.0103;FS=1.571;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=0.084;QD=11.68;ReadPosRankSum=-0.367;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:465,241:0.34:706
chr17	18314964	rs62074238	T	G	16177.77	.	AC=1;AF=0.500;AN=2;DB;DP=1508;set=Intersection	GT:AD:AF:DP	0/1:855,650:0.43:1505
chr17	18315107	rs113907775	C	CCT	43867.73	.	AC=1;AF=0.500;AN=2;DB;DP=2403;set=Intersection	GT:AD:AF:DP	0/1:1150,1180:0.51:2330
chr17	18380135	rs4924879	C	G	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.52;QD=25.32;SOR=0.813;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	18380154	rs1682220	A	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	18380260	rs77759205	C	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;MQ=53.03;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	18565143	rs55636053	T	C	1930.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	18565350	rs9912644	G	C	9807.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	0/1:55,411:0.88:466
chr17	18565423	rs9912852	G	A	11299.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:4,421:0.99:425
chr17	18574794	rs201620470	C	T	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.94;QD=31.36;SOR=3.460;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	18574872	rs146810330	G	T	11900.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.26;QD=27.11;SOR=1.058;set=HC	GT:AD:AF:DP	1/1:0,439:1.00:439
chr17	18574998	rs9635701	A	T	11028.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	18575127	rs9635680	G	A	7932.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.84;QD=40.68;SOR=1.087;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	18575140	rs9635681	A	G	7265.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.79;QD=44.03;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	18575675	rs55797270	T	G	6106.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	18576256	rs4924901	G	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.36;QD=27.08;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	18602476	rs1969051	A	G	8946.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr17	18610134	rs1973459	T	G	4273.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	18630995	rs8075739	G	A	8286.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	18638151	rs9916065	A	G	6984.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	18643642	rs150131079	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.33;QD=26.16;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	18647539	rs116483657	G	A	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.76;QD=32.74;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	18647625	rs74502778	T	A	9984.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr17	18653070	rs9895749	G	A	9005.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	18661953	.	C	CTTAT	403.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.75;QD=40.37;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	18670278	rs4611519	A	G	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.42;QD=29.73;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	18671733	rs10775382	C	A	2084.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	18678548	rs4630608	C	T	8305.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	18684487	rs59588820	A	G	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	18684642	rs75174617	G	T	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.26;QD=25.02;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	18694277	rs61075345	G	A	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr17	18700843	rs115776459	C	A	4433.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	18702094	rs2270139	A	G	4965.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	18702220	rs8080471	T	C	14408.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr17	18708830	rs55974180	G	GT,GTT	4932.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.819;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.538;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.53;MQRankSum=-0.966;QD=13.86;ReadPosRankSum=-1.295;SOR=0.701;set=HC	GT:AD:AF:DP	1/2:60,226,70:0.63,0.20:356
chr17	18769349	rs2386404	T	C	1175.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	18770733	rs2305064	G	A	6544.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	18775900	rs4393623	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	18776020	rs7503678	A	T	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	18785823	.	T	TA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=0.037;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:20,13:0.39:33
chr17	18793061	rs3803835	C	T	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	18793225	rs3826380	A	G	4764.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	18814661	rs55971101	T	TTA	2741.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	18833810	rs1634411	C	T	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	18855611	rs2076562	T	C	5270.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	18863105	rs2074276	C	T	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	18882991	rs2472714	T	A	2233.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	18916893	rs11652575	T	C	1329.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	18918258	rs28526726	C	G	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	18918510	.	A	ACGGTACGGGGGTGGGGGC	938.14	.	AC=2;AF=1.00;AN=2;DP=100;set=Intersection	GT:AD:AF:DP	1/1:2,32:0.94:34
chr17	18923818	rs1624825	G	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	19188902	.	CTG	C	51	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=1;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=51;QD=30.0;SC=GCGTGTCTCTCTGTGTGTGTG;SbPval=0.64;Source=Platypus;TC=15;TCF=6;TCR=9;TR=2;WE=19188911;WS=19188892;set=Platypus	GT:AD:AF:DP	1/0:13,2:0.13:15
chr17	19213335	rs2296981	C	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	19216917	rs3826405	T	C	8585.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	19231898	rs7206963	T	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	19232078	rs6587220	T	C	13362.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,499:1.00:499
chr17	19233096	rs2296979	T	C	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	19240972	rs11652712	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	19247075	rs4924987	G	A	9597.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	19265797	rs10445411	C	T	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.28;SOR=3.076;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	19314611	rs739830	T	C	14505.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr17	19314917	.	CTT	C,CT	792.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.010;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=2.859;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.14;MQRankSum=0.479;QD=10.86;ReadPosRankSum=1.171;SOR=0.949;set=HC	GT:AD:AF:DP	1/2:11,26,36:0.36,0.49:73
chr17	19318031	rs1295330	A	G	15676.77	.	AC=2;AF=1.00;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	1/1:2,578:1.00:580
chr17	19319015	rs1295329	C	T	11155.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr17	19437153	.	A	ACTGCGCGGTACCCACTGCCGGC	67	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=2;MGOF=12;MMLQ=23;MQ=63.17;NF=1;NR=1;PP=67;QD=55.0;SC=AGCAGGCTGCACTGCGCGGTA;SbPval=0.74;Source=Platypus;TC=6;TCF=3;TCR=3;TR=2;WE=19437161;WS=19437143;set=Platypus	GT:AD:AF:DP	1/1:4,2:0.33:6
chr17	19437184	.	T	TACCC	449.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.82;QD=40.88;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	19437187	.	T	C	221	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=2;HapScore=2;MGOF=5;MMLQ=23;MQ=61.78;NF=13;NR=3;PP=221;QD=15.9857007842;SC=TGCGCGGTACTCACTGCCGGC;SbPval=0.59;Source=Platypus;TC=16;TCF=13;TCR=3;TR=16;WE=19437195;WS=19437177;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	19437187	.	T	TGCCGGCCTGCGCGGTACC	730.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.25;QD=56.21;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	19445923	rs12451696	A	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	19458777	rs2440149	G	C	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	19561011	rs3841513	GACTGAATT	G	9846.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr17	19564634	rs1800869	C	G	4646.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	19568486	rs59755039	CT	C	2279.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	19576291	rs71369434	T	C	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	19578873	rs7216	A	T	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr17	19595540	rs11313767	CA	C	547.70	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.661;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.722;MLEAC=2;MLEAF=1.000;MQ=60.06;MQRankSum=-0.350;QD=11.91;ReadPosRankSum=0.398;SOR=0.371;set=HC	GT:AD:AF:DP	1/1:6,40:0.87:46
chr17	19595585	rs12602112	C	T	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.36;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	19608910	rs34629869	CT	C	522.87	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:8,35:0.81:43
chr17	19609947	rs12942065	C	G	11672.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr17	19642268	rs4646791	T	TG	7469.73	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:2,269:0.99:271
chr17	19643699	rs142078447	C	T	10474.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr17	19643810	rs3826507	G	A	12485.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr17	19644226	rs3786036	C	G	1110.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	19644472	rs2072330	A	T	3515.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	19645938	rs887241	A	C	12793.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,489:1.00:489
chr17	19699358	rs192511	T	C	4347.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	19702892	rs11456096	C	CA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.798;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.127;QD=3.87;ReadPosRankSum=-0.038;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:17,15:0.47:32
chr17	19713740	rs150122	C	T	10467.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	19729495	rs157397	T	C	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.28;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	19749952	.	C	CA	162.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=5.985;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.695;SOR=0.144;set=HC	GT:AD:AF:DP	0/1:47,23:0.33:70
chr17	20107773	rs2703805	T	C	10355.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	20108239	rs2703806	A	T	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	20109189	rs2703807	C	T	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	20139968	rs34779112	C	CT	404.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.99;ReadPosRankSum=0.819;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr17	20163529	rs2703791	A	G	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.24;SOR=1.005;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	20209474	rs2120282	C	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	20254234	.	G	GT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-3.522;QD=0.43;ReadPosRankSum=0.659;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:108,22:0.17:130
chr17	20254786	rs199507996	T	C	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.52;QD=22.81;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	20261101	rs111285254	A	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	20370735	rs4985833	T	C	98.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.46;QD=19.78;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	20370767	rs4985834	G	C	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=21.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	20459595	rs57570943	A	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.742;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=4.897;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-4.347;QD=4.06;ReadPosRankSum=0.565;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:69,23:0.25:92
chr17	20459624	rs143635700	TTGGCTG	T	250.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-2.410;QD=5.70;ReadPosRankSum=-3.719;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr17	20768867	rs9906896	A	C	276.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=11.777;MLEAC=1;MLEAF=0.500;MQ=57.80;MQRankSum=-12.611;QD=1.61;ReadPosRankSum=3.649;SOR=0.316;set=HC	GT:AD:AF:DP	0/1:147,25:0.15:172
chr17	20768928	rs141057464	AAT	A	90.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.660;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.223;MLEAC=1;MLEAF=0.500;MQ=56.80;MQRankSum=-5.422;QD=1.49;ReadPosRankSum=-0.218;SOR=0.173;set=HC	GT:AD:AF:DP	0/1:54,7:0.11:61
chr17	20768931	rs76382049	A	G	102.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.263;MLEAC=1;MLEAF=0.500;MQ=56.74;MQRankSum=-5.213;QD=1.80;ReadPosRankSum=0.000;SOR=0.161;set=HC	GT:AD:AF:DP	0/1:50,7:0.12:57
chr17	20906251	rs4985956	C	T	1794.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.79;SOR=7.614;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	20906257	rs4985957	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.62;SOR=7.658;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	20908081	rs66644145	CTAGTGGAGCTGCGGGCAGCCAA	C	2516.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:2,87:0.98:89
chr17	20908325	rs9797279	T	C	5241.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr17	20911173	rs2291034	G	T	5519.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	20916022	rs17770614	A	C	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	20916035	rs4985962	A	G	3473.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	20916362	rs719093	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	20919334	rs7213684	T	G	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	20919337	rs7207753	G	C	1078.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	20921492	rs1038107	C	T	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	20924523	rs2291037	G	A	8266.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	20924620	rs899342	T	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:2,112:0.98:114
chr17	20945874	rs10579510	GCA	G	3889.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	20945887	rs4985967	G	A	4326.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	20946393	rs140762989	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	21075183	rs12936069	G	T	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	21087671	rs3744226	C	T	7162.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	21117589	rs3744223	C	A	6260.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	21117837	rs4985988	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	21147404	rs897926	A	G	4870.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	21156530	rs201190568	G	GC	1323.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	21194658	rs71160134	T	TACAACACAACACAAC,TACAAC	7017.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=141;set=Intersection	GT:AF:DP	1/1:1.00:134
chr17	21194769	rs72840055	C	T	2420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;ClippingRankSum=0.000;DB;DP=345;ExcessHet=3.0103;FS=20.054;MLEAC=1;MLEAF=0.500;MQ=61.21;MQRankSum=-3.615;QD=7.04;ReadPosRankSum=1.875;SOR=1.591;set=HC	GT:AD:AF:DP	0/1:265,79:0.23:344
chr17	21194771	rs114473529	A	T	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=20.500;MLEAC=1;MLEAF=0.500;MQ=61.18;MQRankSum=-3.524;QD=7.23;ReadPosRankSum=1.956;SOR=1.621;set=HC	GT:AD:AF:DP	0/1:257,77:0.23:334
chr17	21194785	rs72840057	T	C	2603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=18.989;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=-2.837;QD=8.04;ReadPosRankSum=1.902;SOR=1.576;set=HC	GT:AD:AF:DP	0/1:247,77:0.24:324
chr17	21194820	rs66503560	G	A	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=3.687;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=0.144;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:231,78:0.25:309
chr17	21194843	rs75693966	T	C	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.528;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.41;ReadPosRankSum=0.334;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:227,75:0.25:302
chr17	21194852	rs72840058	G	A	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.720;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=2.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=1.071;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:208,67:0.24:275
chr17	21194859	rs62056394	G	A	2139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.832;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=3.339;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.42;ReadPosRankSum=0.349;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:189,65:0.26:254
chr17	21198972	rs2363221	T	C	2994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=-1.859;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:99,78:0.44:177
chr17	21198978	rs2363220	C	T	3058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.593;QD=16.18;ReadPosRankSum=-1.753;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:105,84:0.44:189
chr17	21199022	rs35804189	A	T	5751.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:212,153:0.42:365
chr17	21199037	rs2885719	G	A	6357.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:239,186:0.44:425
chr17	21199083	rs4442881	T	A	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	0/1:304,187:0.38:491
chr17	21199105	rs3035435	AG	A	3713.73	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:287,167:0.37:454
chr17	21199236	rs2363219	C	T	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:84,56:0.40:140
chr17	21199275	rs2363218	G	T	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.377;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.81;ReadPosRankSum=-0.649;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:70,44:0.39:114
chr17	21199275	.	GTG	TTA	1698	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=1;MGOF=12;MMLQ=28;MQ=60.0;NF=15;NR=25;PP=1698;QD=43.7866968716;SC=CAGGGTCTCTGTGCAGAGCTT;SbPval=0.6;Source=Platypus;TC=108;TCF=42;TCR=66;TR=40;WE=21199285;WS=21199265;set=Platypus	GT:AD:AF:DP	0/1:68,40:0.37:108
chr17	21199277	rs2363217	G	A	1574.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=0.003;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:72,44:0.38:116
chr17	21199376	rs5819736	G	GT	954.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:108,68:0.39:176
chr17	21199390	rs4997717	C	T	1194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=-1.403;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:116,69:0.37:185
chr17	21199403	rs4997718	C	T	1131.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:110,67:0.38:177
chr17	21199499	rs2885718	G	A	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:51,26:0.34:77
chr17	21199515	rs5025581	C	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,15:0.29:51
chr17	21201579	rs11651154	C	T	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:74,32:0.30:106
chr17	21201719	rs8076154	T	C	8181.77	.	AC=1;AF=0.500;AN=2;DB;DP=1079;set=Intersection	GT:AD:AF:DP	0/1:646,428:0.40:1074
chr17	21201851	rs8072386	A	G	6921.77	.	AC=1;AF=0.500;AN=2;DB;DP=848;set=Intersection	GT:AD:AF:DP	0/1:493,352:0.42:845
chr17	21201884	rs2305875	T	C	7784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.77;ReadPosRankSum=0.627;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:305,222:0.42:527
chr17	21201890	rs8072401	A	G	7382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.512;ClippingRankSum=0.000;DB;DP=465;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.91;ReadPosRankSum=1.678;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:273,191:0.41:464
chr17	21201894	rs8071865	C	T	7058.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.219;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.581;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.97;ReadPosRankSum=1.051;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:256,186:0.42:442
chr17	21201907	rs2305874	G	A	5706.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:191,147:0.43:338
chr17	21202056	rs34676150	G	A	3158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.395;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=4.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.966;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:148,87:0.37:235
chr17	21202063	rs77850849	G	C	3502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.507;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.65;ReadPosRankSum=0.591;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:182,95:0.34:277
chr17	21202067	rs76764437	A	G	3568.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.163;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=3.148;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=1.569;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:198,96:0.33:294
chr17	21202078	rs35477472	G	A	4563.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:230,117:0.34:347
chr17	21202102	rs35701021	C	T	5175.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:359,177:0.33:536
chr17	21202191	rs33911218	C	A	8087.77	.	AC=1;AF=0.500;AN=2;DB;DP=1421;set=Intersection	GT:AD:AF:DP	0/1:950,469:0.33:1419
chr17	21202237	rs36047035	G	C	8046.77	.	AC=1;AF=0.500;AN=2;DB;DP=1369;set=Intersection	GT:AD:AF:DP	0/1:909,457:0.33:1366
chr17	21202272	rs34880480	C	G	6145.77	.	AC=1;AF=0.500;AN=2;DB;DP=978;set=Intersection	GT:AD:AF:DP	0/1:642,334:0.34:976
chr17	21202310	rs77343934	GC	AT	6567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=1.948;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.94;ReadPosRankSum=0.332;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:366,184:0.33:550
chr17	21202316	rs78463537	T	C	5894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.577;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=0.667;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:343,170:0.33:513
chr17	21202318	rs77591777	G	T	5801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=0.883;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:328,162:0.33:490
chr17	21202370	rs34794731	G	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:105,65:0.38:170
chr17	21202382	rs35763451	TG	T	2059.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:72,57:0.44:129
chr17	21203689	rs71207220	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-1.310;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr17	21203820	rs78304829	G	C	2498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.218;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.590;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:158,71:0.31:229
chr17	21203825	rs75854955	C	G	2542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.266;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:162,76:0.32:238
chr17	21203893	rs34105301	T	C	2473.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:215,130:0.38:345
chr17	21203934	rs62057672	G	A	3420.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:171,102:0.37:273
chr17	21203949	rs62057673	C	T	3160.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:144,87:0.38:231
chr17	21203998	rs62057674	G	A	963.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:82,44:0.35:126
chr17	21204153	rs66883103	C	T	1961.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:172,97:0.36:269
chr17	21204187	rs56067280	G	T	6573.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.767;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=3.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=0.970;SOR=1.006;set=HC	GT:AD:AF:DP	0/1:328,175:0.35:503
chr17	21204192	rs56216806	C	T	6939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.590;ClippingRankSum=0.000;DB;DP=550;ExcessHet=3.0103;FS=4.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.826;SOR=1.055;set=HC	GT:AD:AF:DP	0/1:355,190:0.35:545
chr17	21204210	rs55796947	C	T	7651.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:440,240:0.35:680
chr17	21204257	rs56166328	G	A	13071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.286;ClippingRankSum=0.000;DB;DP=999;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=1.619;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:628,364:0.37:992
chr17	21204266	rs2230435	T	C	13422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.202;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=1.450;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:657,382:0.37:1039
chr17	21204308	rs55777930	G	T	13736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.85;ReadPosRankSum=0.954;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:681,388:0.36:1069
chr17	21204314	.	TTG	T	13509.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.353;ClippingRankSum=0.000;DP=1067;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.78;ReadPosRankSum=1.605;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:686,371:0.35:1057
chr17	21204318	.	A	ACG	13429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.572;ClippingRankSum=0.000;DP=1058;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.81;ReadPosRankSum=2.137;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:680,368:0.35:1048
chr17	21204428	rs36191822	G	T	4559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=2.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=1.362;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:208,131:0.39:339
chr17	21204437	rs76549047	T	C	4305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.053;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.16;ReadPosRankSum=0.779;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:169,115:0.40:284
chr17	21204441	rs78162711	T	C	4127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.916;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.52;ReadPosRankSum=0.622;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:157,109:0.41:266
chr17	21205352	rs66761201	CGGA	C	1909.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=1.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=-0.433;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:202,60:0.23:262
chr17	21205360	rs74998514	G	A	1946.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.434;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=-0.320;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:211,62:0.23:273
chr17	21205361	rs67557217	GGCT	G	1932.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.359;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=0.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.214;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:215,62:0.22:277
chr17	21205396	rs75974715	C	A	2617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.723;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.481;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=0.002;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:215,81:0.27:296
chr17	21205406	rs72831582	A	G	2731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.132;ClippingRankSum=0.000;DB;DP=313;ExcessHet=3.0103;FS=2.119;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=0.325;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:224,88:0.28:312
chr17	21205460	rs62057721	C	T	2456.77	.	AC=1;AF=0.500;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	0/1:287,143:0.33:430
chr17	21205592	rs66644302	GGC	G	840.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.748;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=41.316;MLEAC=1;MLEAF=0.500;MQ=60.28;MQRankSum=5.565;QD=3.98;ReadPosRankSum=-2.793;SOR=2.317;set=HC	GT:AD:AF:DP	0/1:176,35:0.17:211
chr17	21205604	rs62057722	T	C	882.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=39.025;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.158;QD=4.93;ReadPosRankSum=-2.914;SOR=2.087;set=HC	GT:AD:AF:DP	0/1:147,32:0.18:179
chr17	21205642	rs62057723	T	G	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:71,18:0.20:89
chr17	21205654	rs72831585	AT	GA	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;JOINED;set=Intersection	GT:AD:AF:DP	0/1:60,18:0.23:78
chr17	21206269	rs73982750	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:36,26:0.42:62
chr17	21206294	rs73311581	C	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:66,33:0.33:99
chr17	21206360	rs67280439	A	G	4647.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:220,120:0.35:340
chr17	21206372	rs72838545	G	C	5005.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:248,137:0.36:385
chr17	21206385	rs72838547	C	T	5315.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:299,157:0.34:456
chr17	21206440	rs3744222	C	T	10724.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:292,502:0.63:794
chr17	21206444	rs62057728	A	G	5311.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:512,295:0.37:807
chr17	21206556	rs736103	C	T	3649.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:265,195:0.42:460
chr17	21206616	rs57761454	G	A	1677.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:88,73:0.45:161
chr17	21206632	rs35678520	C	T	1499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=11.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.02;ReadPosRankSum=0.010;SOR=3.264;set=HC	GT:AD:AF:DP	0/1:65,42:0.39:107
chr17	21206635	rs77285979	T	A	1476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.002;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=8.139;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.48;ReadPosRankSum=0.255;SOR=2.865;set=HC	GT:AD:AF:DP	0/1:63,39:0.38:102
chr17	21206642	rs59259996	G	A	1292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.774;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.520;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.69;ReadPosRankSum=0.126;SOR=2.110;set=HC	GT:AD:AF:DP	0/1:54,34:0.39:88
chr17	21206654	rs56821097	G	T	621.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr17	21207602	rs55677712	C	G	721.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:49,23:0.32:72
chr17	21207649	rs56342308	C	T	862.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:118,49:0.29:167
chr17	21207844	rs2230436	C	T	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:367,198:0.35:565
chr17	21207909	rs41301807	G	A	1405.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.437;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=4.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.161;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:166,70:0.30:236
chr17	21207916	rs7209761	A	G	7686.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	21207938	rs75147012	C	T	397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.277;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=14.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.829;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:120,32:0.21:152
chr17	21207945	rs9896440	A	G	2073.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.423;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.59;ReadPosRankSum=0.432;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:65,68:0.51:133
chr17	21208292	rs7214432	T	C	933.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.282;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=2.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=1.733;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:160,57:0.26:217
chr17	21208317	rs4456559	G	A	5314.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:134,192:0.59:326
chr17	21208331	rs1898407	G	A	2596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.844;ClippingRankSum=0.000;DB;DP=425;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=2.020;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:305,119:0.28:424
chr17	21208347	rs4559960	C	A	2932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.71;ReadPosRankSum=1.050;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:368,146:0.28:514
chr17	21208349	rs7209860	C	G	2213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.247;ClippingRankSum=0.000;DB;DP=528;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.837;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:385,141:0.27:526
chr17	21208413	rs1657695	C	T	2204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;ClippingRankSum=0.000;DB;DP=606;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.66;ReadPosRankSum=1.158;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:449,154:0.26:603
chr17	21208449	rs1657694	G	T	3941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662;ClippingRankSum=0.000;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-0.286;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:348,127:0.27:475
chr17	21208456	rs1657693	A	G	3491.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.94;ReadPosRankSum=0.028;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:326,114:0.26:440
chr17	21208640	rs7209152	G	A	150.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:18,9:0.33:27
chr17	21215424	rs35026048	G	A	2001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.214;QD=10.27;ReadPosRankSum=-0.001;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:138,57:0.29:195
chr17	21215434	rs113634008	A	AC	2380.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.136;QD=10.44;ReadPosRankSum=-0.806;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:158,70:0.31:228
chr17	21215446	rs62055363	C	T	2598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.369;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.66;ReadPosRankSum=-0.566;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:187,82:0.30:269
chr17	21215483	rs55935757	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:317,145:0.31:462
chr17	21215537	rs55736474	C	A	10413.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:556,283:0.34:839
chr17	21215552	rs56369732	C	T	11879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.056;ClippingRankSum=0.000;DB;DP=941;ExcessHet=3.0103;FS=1.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.68;ReadPosRankSum=0.339;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:615,322:0.34:937
chr17	21215557	rs35206134	G	A	11820.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;ClippingRankSum=0.000;DB;DP=968;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.26;ReadPosRankSum=0.459;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:632,332:0.34:964
chr17	21215637	rs66486636	G	A	8850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.824;ClippingRankSum=0.000;DB;DP=719;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.36;ReadPosRankSum=0.474;SOR=0.806;set=HC	GT:AD:AF:DP	0/1:461,255:0.36:716
chr17	21215643	rs73302034	A	G	8675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.63;ReadPosRankSum=0.255;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:447,240:0.35:687
chr17	21215682	rs73302038	G	A	2816.77	.	AC=1;AF=0.500;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	0/1:283,146:0.34:429
chr17	21215700	rs73302043	T	G	1789.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:212,93:0.30:305
chr17	21216661	rs4994551	C	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.377;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=2.778;QD=9.98;ReadPosRankSum=0.036;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:75,30:0.29:105
chr17	21216664	rs4081986	A	G	1151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.695;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=2.706;QD=10.66;ReadPosRankSum=-0.589;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:76,32:0.30:108
chr17	21216686	rs4994549	C	A	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:119,55:0.32:174
chr17	21216710	rs4994548	T	C	1294.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.751;QD=5.08;ReadPosRankSum=0.057;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:182,73:0.29:255
chr17	21216758	rs5819747	G	GCTTC	4991.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.703;ClippingRankSum=0.000;DB;DP=490;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.662;QD=10.36;ReadPosRankSum=0.666;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:338,144:0.30:482
chr17	21216788	rs1673840	C	T	3728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=1.844;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-1.379;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:416,215:0.34:631
chr17	21216846	rs1657688	G	C	3946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=532;ExcessHet=3.0103;FS=11.107;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.727;QD=7.49;ReadPosRankSum=1.093;SOR=0.300;set=HC	GT:AD:AF:DP	0/1:314,213:0.40:527
chr17	21216891	rs934688	G	A	2535.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:168,145:0.46:313
chr17	21216951	rs1673839	C	G	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:76,62:0.45:138
chr17	21216964	rs1657686	T	C	3916.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	21217290	rs1673837	G	A	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.779;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=5.019;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=-2.174;SOR=0.359;set=HC	GT:AD:AF:DP	0/1:81,46:0.36:127
chr17	21217397	rs1657685	A	G	7550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.597;ClippingRankSum=0.000;DB;DP=646;ExcessHet=3.0103;FS=1.841;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.664;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:419,225:0.35:644
chr17	21217400	rs1622401	G	A	7559.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.651;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.42;ReadPosRankSum=-0.233;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:435,227:0.34:662
chr17	21217411	rs1657684	T	C	4673.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:476,262:0.36:738
chr17	21217513	rs2363198	G	A	5821.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:492,319:0.39:811
chr17	21217547	rs2363197	T	C	7825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;ClippingRankSum=0.000;DB;DP=586;ExcessHet=3.0103;FS=0.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.40;ReadPosRankSum=-0.637;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:353,231:0.40:584
chr17	21217554	rs2363196	C	T	6576.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=531;ExcessHet=3.0103;FS=0.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.43;ReadPosRankSum=0.207;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:329,200:0.38:529
chr17	21217566	rs2363375	C	T	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:284,170:0.37:454
chr17	21217586	rs2363374	G	T	4117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;ClippingRankSum=0.000;DB;DP=330;ExcessHet=3.0103;FS=1.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.48;ReadPosRankSum=-0.112;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:207,123:0.37:330
chr17	21217596	rs2363373	C	G	3749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.842;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=1.628;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.54;ReadPosRankSum=-0.133;SOR=0.840;set=HC	GT:AD:AF:DP	0/1:175,102:0.37:277
chr17	21318521	rs76804083	C	T	1217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.486;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.95;ReadPosRankSum=1.386;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:98,38:0.28:136
chr17	21318546	rs112960185	A	G	2734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.759;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=0.662;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.59;ReadPosRankSum=-1.028;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:164,72:0.31:236
chr17	21318552	rs112854769	G	A	3139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.063;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=2.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.76;ReadPosRankSum=-1.810;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:182,85:0.32:267
chr17	21318555	rs58462457	C	T	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.517;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=2.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=1.822;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:188,92:0.33:280
chr17	21318569	rs74584621	C	T	4509.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:254,122:0.32:376
chr17	21318586	rs59891808	G	C	13400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.986;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.59;ReadPosRankSum=0.880;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:177,327:0.65:504
chr17	21318586	.	GTCTCTGTTG	CTCTCTGTTC,CTGTCTGTTG	1892	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.17;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=43;MMLQ=28;MQ=60.0;NF=108,99;NR=59,47;PP=319,1892;QD=2.23034655606;SC=ACATGCTGTCGTCTCTGTTGC;SbPval=0.49;Source=Platypus;TC=498;TCF=326;TCR=172;TR=167,146;WE=21318611;WS=21318576;set=Platypus	GT:AF:DP	0/1:0.34:498
chr17	21318588	rs77791524	C	G	5621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.85;ReadPosRankSum=0.786;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:359,159:0.31:518
chr17	21318595	rs58780973	G	C	6724.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;ClippingRankSum=0.000;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.88;ReadPosRankSum=-0.929;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:366,200:0.35:566
chr17	21318603	rs79809401	C	T	5939.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;ClippingRankSum=0.000;DB;DP=631;ExcessHet=3.0103;FS=1.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.44;ReadPosRankSum=1.878;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:443,186:0.30:629
chr17	21318629	rs58862472	C	T	6430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358;ClippingRankSum=0.000;DB;DP=912;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.06;ReadPosRankSum=-0.747;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:326,313:0.49:639
chr17	21318663	rs72846666	G	A	6223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DB;DP=1400;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.279;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:1002,393:0.28:1395
chr17	21318698	rs1657738	C	T	10260.77	.	AC=1;AF=0.500;AN=2;DB;DP=1634;set=Intersection	GT:AD:AF:DP	0/1:1055,574:0.35:1629
chr17	21318782	rs78117732	G	A	2229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.550;ClippingRankSum=0.000;DB;DP=1716;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=1.455;SOR=0.779;set=HC	GT:AD:AF:DP	0/1:1342,284:0.17:1626
chr17	21318821	rs1714865	A	C	9389.77	.	AC=1;AF=0.500;AN=2;DB;DP=1592;set=Intersection	GT:AD:AF:DP	0/1:1044,540:0.34:1584
chr17	21318897	rs1657739	G	C	8932.77	.	AC=1;AF=0.500;AN=2;DB;DP=1332;set=Intersection	GT:AD:AF:DP	0/1:857,469:0.35:1326
chr17	21318912	rs35011501	C	A	4702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.322;ClippingRankSum=0.000;DB;DP=1306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.864;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:1040,262:0.20:1302
chr17	21318918	rs79626424	G	A	4524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=1296;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.028;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:1043,249:0.19:1292
chr17	21318948	rs112314728	C	T	5147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DB;DP=1220;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.858;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:1013,198:0.16:1211
chr17	21318951	rs75757803	C	T	5219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DB;DP=1201;ExcessHet=3.0103;FS=1.538;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.326;SOR=0.854;set=HC	GT:AD:AF:DP	0/1:999,197:0.16:1196
chr17	21318952	rs8076599	A	G	17624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=1207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-1.037;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:542,660:0.55:1202
chr17	21318969	rs79666990	C	T	4993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.514;ClippingRankSum=0.000;DB;DP=1172;ExcessHet=3.0103;FS=0.730;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.522;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:979,190:0.16:1169
chr17	21318981	rs9909970	C	T	4440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.824;ClippingRankSum=0.000;DB;DP=1121;ExcessHet=3.0103;FS=1.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.98;ReadPosRankSum=-1.646;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:941,176:0.16:1117
chr17	21319007	rs1657740	G	A	8032.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=1020;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.14;ReadPosRankSum=0.130;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:581,406:0.41:987
chr17	21319007	.	GG	AC	2944	.	AC=1;AF=0.500;AN=2;BRF=0.11;FR=0.5000;HP=3;HapScore=2;MGOF=27;MMLQ=23;MQ=60.0;NF=191;NR=188;PP=2944;QD=20;SC=GCTGAGGGCCGGGGCCGCACA;SbPval=0.43;Source=Platypus;TC=1012;TCF=485;TCR=527;TR=379;WE=21319016;WS=21318997;set=Platypus	GT:AD:AF:DP	1/0:633,379:0.37:1012
chr17	21319008	rs1657741	G	C	17736.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=0.000;DB;DP=1024;ExcessHet=3.0103;FS=2.439;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.84;ReadPosRankSum=-0.806;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:484,510:0.51:994
chr17	21319069	rs76265595	G	A	6509.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=1216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=2.418;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:984,229:0.19:1213
chr17	21319079	rs76518282	C	A	7039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;ClippingRankSum=0.000;DB;DP=1231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.73;ReadPosRankSum=3.014;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:990,238:0.19:1228
chr17	21319087	rs75029097	G	A	7242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=1234;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=2.674;SOR=0.731;set=HC	GT:AD:AF:DP	0/1:988,244:0.20:1232
chr17	21319110	rs77283567	G	A	7317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=1250;ExcessHet=3.0103;FS=2.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=0.164;SOR=0.891;set=HC	GT:AD:AF:DP	0/1:987,261:0.21:1248
chr17	21319121	rs1714864	C	T	9109.77	.	AC=1;AF=0.500;AN=2;DB;DP=1293;set=Intersection	GT:AD:AF:DP	0/1:815,474:0.37:1289
chr17	21319171	rs73313922	G	A	3327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.534;ClippingRankSum=0.000;DB;DP=1310;ExcessHet=3.0103;FS=0.664;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.55;ReadPosRankSum=-1.446;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:1042,263:0.20:1305
chr17	21319208	rs73979896	C	T	3387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.106;ClippingRankSum=0.000;DB;DP=1289;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.63;ReadPosRankSum=0.535;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:1016,270:0.21:1286
chr17	21319230	rs1657742	G	C	7986.77	.	AC=1;AF=0.500;AN=2;DB;DP=1338;set=Intersection	GT:AD:AF:DP	0/1:897,431:0.32:1328
chr17	21319251	rs73313923	C	T	9156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;ClippingRankSum=0.000;DB;DP=1323;ExcessHet=3.0103;FS=2.140;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=0.959;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:1016,304:0.23:1320
chr17	21319272	rs73313926	C	T	9682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;ClippingRankSum=0.000;DB;DP=1378;ExcessHet=3.0103;FS=3.064;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.756;QD=7.04;ReadPosRankSum=1.695;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:1071,305:0.22:1376
chr17	21319285	rs72846667	C	T	9248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;ClippingRankSum=0.000;DB;DP=1434;ExcessHet=3.0103;FS=3.120;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.746;QD=6.46;ReadPosRankSum=1.283;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:1121,311:0.22:1432
chr17	21319302	rs1657743	T	C	24695.77	.	AC=1;AF=0.500;AN=2;DB;DP=1493;set=Intersection	GT:AD:AF:DP	0/1:637,852:0.57:1489
chr17	21319311	rs72846668	C	T	3885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DB;DP=1513;ExcessHet=3.0103;FS=2.249;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.719;QD=2.57;ReadPosRankSum=1.142;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:1201,309:0.20:1510
chr17	21319369	rs77048459	G	A	8230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.106;ClippingRankSum=0.000;DB;DP=1768;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=0.739;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:1453,312:0.18:1765
chr17	21319392	rs73979899	G	A	8701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=1857;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=0.312;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:1537,318:0.17:1855
chr17	21319407	rs16962951	C	T	8126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.361;ClippingRankSum=0.000;DB;DP=1862;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-5.921;QD=4.37;ReadPosRankSum=-0.804;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:1548,310:0.17:1858
chr17	21319436	rs77270326	G	A	6060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=0.000;DB;DP=1681;ExcessHet=3.0103;FS=0.743;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-13.824;QD=3.61;ReadPosRankSum=0.580;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:1426,251:0.15:1677
chr17	21319439	rs76684759	T	G	6075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DB;DP=1673;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=-14.198;QD=3.64;ReadPosRankSum=1.081;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:1424,245:0.15:1669
chr17	21319452	rs73313929	G	A	5436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;ClippingRankSum=0.000;DB;DP=1573;ExcessHet=3.0103;FS=0.763;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-15.183;QD=3.47;ReadPosRankSum=1.156;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:1344,225:0.14:1569
chr17	21319465	.	T	C	4906.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.575;ClippingRankSum=0.000;DP=1431;ExcessHet=3.0103;FS=0.754;MLEAC=1;MLEAF=0.500;MQ=59.57;MQRankSum=-16.431;QD=3.44;ReadPosRankSum=0.654;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:1223,204:0.14:1427
chr17	21319470	.	T	C	4756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=0.000;DP=1371;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-17.173;QD=3.48;ReadPosRankSum=0.425;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:1171,196:0.14:1367
chr17	21319473	rs1657744	G	A	11581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0.000;DB;DP=1323;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=6.479;QD=8.79;ReadPosRankSum=0.239;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:742,576:0.44:1318
chr17	21319488	rs77176173	C	T	3941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=1132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.37;MQRankSum=-16.477;QD=3.49;ReadPosRankSum=-0.530;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:961,167:0.15:1128
chr17	21319519	rs78113532	G	C	2519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.494;ClippingRankSum=0.000;DB;DP=856;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-16.709;QD=2.96;ReadPosRankSum=0.706;SOR=0.897;set=HC	GT:AD:AF:DP	0/1:736,116:0.14:852
chr17	21319523	rs77987694	C	T	2520.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.443;ClippingRankSum=0.000;DB;DP=811;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-16.771;QD=3.12;ReadPosRankSum=0.702;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:699,110:0.14:809
chr17	21319527	rs80022364	C	T	2393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.544;ClippingRankSum=0.000;DB;DP=766;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-16.814;QD=3.13;ReadPosRankSum=0.607;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:660,104:0.14:764
chr17	21319543	rs80335301	G	A	2446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.489;ClippingRankSum=0.000;DB;DP=666;ExcessHet=3.0103;FS=2.649;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-16.275;QD=3.70;ReadPosRankSum=-1.248;SOR=0.993;set=HC	GT:AD:AF:DP	0/1:565,97:0.15:662
chr17	21319560	rs74801394	G	T	2251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=633;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.42;MQRankSum=-14.709;QD=3.57;ReadPosRankSum=-2.516;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:529,101:0.16:630
chr17	21319650	.	CGAG	C	3965.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DP=779;ExcessHet=3.0103;FS=0.686;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-8.068;QD=5.29;ReadPosRankSum=0.233;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:608,142:0.19:750
chr17	21319682	rs80203231	C	T	1698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=0.660;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-10.910;QD=2.29;ReadPosRankSum=-1.183;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:592,150:0.20:742
chr17	21319716	rs78135255	G	A	3461.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.169;ClippingRankSum=0.000;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-11.796;QD=5.21;ReadPosRankSum=0.916;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:537,127:0.19:664
chr17	21319728	rs76681424	T	C	3754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.778;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-13.054;QD=6.03;ReadPosRankSum=-0.224;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:498,125:0.20:623
chr17	21319743	rs76267885	A	G	3469.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=574;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-13.427;QD=6.07;ReadPosRankSum=-0.360;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:457,115:0.20:572
chr17	21319767	rs1612176	C	T	6017.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:214,177:0.45:391
chr17	21319785	rs1657745	C	T	5231.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:266,153:0.37:419
chr17	21319786	rs78547883	G	A	2376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.159;ClippingRankSum=0.000;DB;DP=417;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-7.902;QD=5.71;ReadPosRankSum=0.837;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:330,86:0.21:416
chr17	21319845	rs72846670	C	T	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.805;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-0.247;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:187,53:0.22:240
chr17	21319860	rs2917720	C	T	1585.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.097;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=2.819;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.50;ReadPosRankSum=1.566;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:90,77:0.46:167
chr17	21319860	.	CGGCCTCAG	AGGCCTCAT,TGGCCTCAG	452	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=25;MMLQ=23;MQ=60.0;NF=14,31;NR=20,35;PP=452,116;QD=14.8667022018;SC=GAAGCCGGGACGGCCTCAGCC;SbPval=0.63;Source=Platypus;TC=184;TCF=79;TCR=105;TR=34,66;WE=21319876;WS=21319850;set=Platypus	GT:AF:DP	0/1:0.18:184
chr17	21319868	rs73979902	G	T	938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.737;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.36;ReadPosRankSum=0.136;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:142,33:0.19:175
chr17	21319943	rs5021699	A	G	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:44,26:0.37:70
chr17	21319989	rs5021700	C	T	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.039;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.02;ReadPosRankSum=0.782;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr17	21319993	rs5021701	T	C	740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.16;ReadPosRankSum=-0.636;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:15,20:0.57:35
chr17	21320008	rs78435971	C	T	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.340;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.108;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr17	21320012	rs77515828	C	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.430;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chr17	21320025	rs5021702	C	T	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.690;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr17	21535972	rs10221228	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.659;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=4.804;MLEAC=1;MLEAF=0.500;MQ=55.90;MQRankSum=-4.978;QD=0.73;ReadPosRankSum=1.363;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:63,7:0.10:70
chr17	21536065	rs9325914	A	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.490;ClippingRankSum=0.000;DB;DP=305;ExcessHet=3.0103;FS=21.704;MLEAC=1;MLEAF=0.500;MQ=55.94;MQRankSum=-14.648;QD=2.36;ReadPosRankSum=-2.771;SOR=1.809;set=HC	GT:AD:AF:DP	0/1:241,64:0.21:305
chr17	21536106	rs9325915	T	C	1444.77	.	AC=1;AF=0.500;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	0/1:259,93:0.26:352
chr17	21536168	rs9325916	G	A	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:126,84:0.40:210
chr17	21544462	rs9285742	G	A	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-1.933;QD=20.10;ReadPosRankSum=-1.075;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:13,15:0.54:28
chr17	21544470	rs9285743	A	G	604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=58.44;MQRankSum=-1.303;QD=19.51;ReadPosRankSum=-0.882;SOR=0.349;set=HC	GT:AD:AF:DP	0/1:14,17:0.55:31
chr17	21544587	rs9285744	A	G	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=59.48;MQRankSum=-0.865;QD=13.11;ReadPosRankSum=0.489;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:51,83:0.62:134
chr17	21544646	rs9285745	T	C	1322.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr17	21544674	rs9747056	T	A	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:17,47:0.73:64
chr17	21730653	rs11656087	G	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	22066776	rs75644031	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=3.778;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-12.309;QD=0.91;ReadPosRankSum=-0.250;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:158,15:0.09:173
chr17	22066780	rs78507742	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=58.45;MQRankSum=-12.756;QD=1.08;ReadPosRankSum=-1.223;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:162,19:0.10:181
chr17	22066807	rs78727354	G	T	371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=2.775;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=-13.609;QD=1.73;ReadPosRankSum=0.234;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:190,25:0.12:215
chr17	22066822	rs137955476	C	T	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.975;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-13.033;QD=1.84;ReadPosRankSum=1.321;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:185,25:0.12:210
chr17	22066835	rs147079852	C	T	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=-12.781;QD=2.04;ReadPosRankSum=1.731;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:177,25:0.12:202
chr17	22066856	rs138169151	CAG	C	479.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.443;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=3.003;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-11.300;QD=2.81;ReadPosRankSum=1.284;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:148,23:0.13:171
chr17	22066870	rs79914182	G	T	468.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.384;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=1.911;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-11.532;QD=2.97;ReadPosRankSum=0.342;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:136,22:0.14:158
chr17	25628820	rs6561	T	C	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	25630388	rs2270761	T	C	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	25636954	rs11080131	T	G	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	25639104	rs11305587	CT	C	545.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	25753033	rs13341669	T	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	25783681	rs1829803	A	G	83.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	25887530	rs2945397	G	C	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	25887541	rs2948526	C	T	4293.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.879;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	25887571	rs61054489	T	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	25909850	rs2293181	G	T	13886.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:1,527:1.00:528
chr17	25912828	rs2945373	A	G	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr17	25917810	rs1403321	A	G	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	25944235	rs4267373	A	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	26079737	rs2304887	T	G	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.42;QD=29.61;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	26088337	rs59685746	GC	G	212.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	26094596	rs28944169	C	T	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	26108040	rs2297520	T	C	7343.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	26109030	rs3729508	T	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	26125918	rs3730013	G	A	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	26206414	rs3751972	C	A	425.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	26369801	rs35191042	A	G	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	26633347	rs35679432	T	TG	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.44;ReadPosRankSum=2.920;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:6,7:0.54:13
chr17	26646434	rs5819836	G	GC	4313.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	26669245	rs5819838	A	AG	1854.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	26684283	rs11314852	GT	G	5580.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	26684390	rs11448856	G	GC	4745.73	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	26684394	rs17856014	T	G	4754.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	26684449	rs4795429	G	C	1500.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	26684529	rs113967755	G	GGC	727.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	26687484	rs11379368	G	GC	1387.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	26687898	rs11382918	G	GC	935.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	26692224	rs11387886	A	AG	14621.73	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr17	26695704	rs2227725	A	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	26699121	rs7212814	G	C	1148.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	26699195	rs11437592	C	CG	1551.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	26699199	rs112387743	G	GC	1512.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.27;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	26699205	rs11340312	GA	G	1312.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	26699367	rs11437594	G	GC	2063.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	26708298	.	A	AGC	7877.73	.	AC=2;AF=1.00;AN=2;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.27;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	26708302	.	GGT	G	7877.73	.	AC=2;AF=1.00;AN=2;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.02;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	26708550	rs11658194	TC	CG	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	26727721	rs5819844	GA	G	1771.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	26729428	rs4795436	C	T	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.160;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	26816365	rs11443311	G	GC	6463.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	26818676	rs9890678	T	C	10021.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	26850810	rs10527420	TTCTCTCTCTCTCTCTCTC	TTC,T	1967.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=55;set=Intersection	GT:AF:DP	1/1:1.00:48
chr17	26850929	rs483434	A	C	6196.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	26851501	rs614434	G	A	12027.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr17	26874314	rs2070139	G	A	7413.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:2,276:0.99:278
chr17	26910922	rs143883268	C	T	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	26916364	rs141808020	G	A	333.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.84;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	27000391	rs9904043	A	G	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	27002402	rs9892089	A	G	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	27004703	rs7207976	C	A	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	27009749	rs12051648	C	T	2102.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	27014942	.	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.188;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=1.527;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.29;ReadPosRankSum=-0.953;SOR=1.034;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr17	27037996	rs139573327	T	TGGGAAGGGAGGGAAGGAGTAGGGC	114.52	.	AC=1;AF=0.500;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;QD=28.63;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:0,4:1.00:4
chr17	27053097	.	G	A	125.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr17	27053568	rs12952249	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	27061782	.	G	A	7028.77	.	AC=2;AF=1.00;AN=2;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	27093542	rs9900141	G	A	5567.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.31;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	27185827	rs2242345	C	T	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	27187636	rs9279	G	T	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:1,255:1.00:256
chr17	27188296	rs28448745	A	C	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	27208191	rs117741203	G	A	3470.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	27225937	rs4795473	C	T	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	27238032	rs75491281	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	27246368	rs68042462	CCTCCCCTCCTTGATCCTAACATT	C	1902.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=44.25;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	27441077	rs12601535	C	G	8186.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	27580933	rs186426912	A	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	27613677	rs12452857	G	A	4033.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	27614186	rs139731845	A	G	6816.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	27835138	rs508706	C	T	4482.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:2,166:0.99:168
chr17	27835211	rs622096	A	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	27857698	rs536327	C	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	27869968	rs507577	G	A	9850.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr17	27904322	rs601364	A	G	6150.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	27949934	rs77991986	G	GC	1038.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	28011501	rs11307211	TA	T	935.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.623;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=4.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.51;ReadPosRankSum=0.467;SOR=1.671;set=HC	GT:AD:AF:DP	1/1:13,76:0.85:89
chr17	28011503	.	A	T	595.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=4.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.77;ReadPosRankSum=-0.747;SOR=1.224;set=HC	GT:AD:AF:DP	0/1:36,52:0.59:88
chr17	28029938	rs3102560	T	C	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	28120887	rs72823964	C	T	2956.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.907;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	28268800	rs4567782	A	C	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	28296327	rs9897794	T	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	28320248	rs4795524	T	A	6761.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	28380485	.	C	A	5160.77	.	AC=1;AF=0.500;AN=2;DP=512;set=Intersection	GT:AD:AF:DP	0/1:260,249:0.49:509
chr17	28400079	.	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=0.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.32;ReadPosRankSum=-0.088;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:156,34:0.18:190
chr17	28434826	rs5819880	ACTTTT	A	570.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:3,32:0.91:35
chr17	28444183	rs6505162	A	C	192.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	28444254	rs8067576	T	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	28505024	rs7221154	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	28511978	rs1979572	G	A	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	28538532	rs140701	C	T	1553.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	28549898	rs6354	G	T	3349.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	28549978	rs25528	G	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	28576076	rs1050565	T	C	3525.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	28612448	rs7342921	G	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	28618972	rs34774348	T	TCGG	1842.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:10,81:0.89:91
chr17	28646057	rs6505173	A	G	3285.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	28659010	rs3110095	C	T	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	28811658	rs5819903	G	GT	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.455;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.43;ReadPosRankSum=-0.876;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr17	28811834	.	G	GT	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=1.038;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=1.039;SOR=0.526;set=HC	GT:AD:AF:DP	0/1:74,19:0.20:93
chr17	28887667	rs78888987	T	C	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.864;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-11.607;QD=0.67;ReadPosRankSum=0.968;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:115,22:0.16:137
chr17	28952286	rs423151	A	G	10338.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr17	28960991	.	C	CTTTTTTCTTTT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=3.982;MLEAC=1;MLEAF=0.500;MQ=61.71;MQRankSum=-0.114;QD=2.12;ReadPosRankSum=0.517;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chr17	29051353	rs4055313	CAT	C	4707.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	29062041	rs72310809	CTT	C	1511.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.97;QD=35.99;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	29095920	rs78029162	TCAAA	T	5205.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	29096821	rs11656419	A	G	391.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	29097076	rs11652282	G	A	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=48.29;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	29103295	rs58883430	T	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.33;QD=30.41;SOR=3.334;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	29113016	rs34756112	A	G	7536.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	29113171	rs55751716	AC	A	1211.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	29124200	rs11657990	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	29124515	rs34513490	TA	T	1110.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	29151705	rs3752019	C	T	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	29159329	rs999797	G	A	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	29159404	rs999796	G	C	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	29161202	rs9910051	A	T	5635.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.398;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=2.990;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.73;ReadPosRankSum=0.034;SOR=0.146;set=HC	GT:AD:AF:DP	1/1:2,217:0.99:219
chr17	29161358	rs3816780	C	T	6380.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	29161845	rs17826219	G	A	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	29161955	rs72427574	ACAATGT	A	4605.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	29162173	rs11655623	T	C	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	29164154	rs3764420	A	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	29167653	rs3764421	A	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	29171765	.	C	CAAAAA	56	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=0.9998;HP=20;HapScore=2;MGOF=7;MMLQ=24;MQ=47.7;NF=2;NR=0;PP=56;QD=29.5;SC=GACTCCATCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=5;TCF=5;TCR=0;TR=2;WE=29171773;WS=29171755;set=Platypus	GT:AD:AF:DP	1/1:3,2:0.40:5
chr17	29184166	rs73277967	T	A	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	29185054	rs60020217	G	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	29187497	rs9896095	A	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	29195444	rs201420202	CT	C	308.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.446;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=0.915;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr17	29195527	.	A	ATT	31.37	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.69;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	29196133	rs73277984	T	C	575.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;MQ=59.08;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	29196197	rs73277986	C	T	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	29206433	rs9903862	G	A	2032.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.46;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	29206620	rs9904318	G	A	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	29214387	rs11657270	T	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	29221227	rs9898911	A	T	487.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	29221763	rs61348930	C	T	1296.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	29226228	rs2433	T	C	2175.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:2,79:0.98:81
chr17	29226630	rs28539246	T	A	1002.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	29226652	rs9897628	A	G	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	29233082	.	ACCCCAG	A	8516.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=285;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.35;QD=29.88;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	29233083	.	C	T	1137	.	AC=2;AF=1.00;AN=2;BRF=0.34;FR=1.0000;HP=3;HapScore=1;MGOF=11;MMLQ=25;MQ=53.08;NF=45;NR=3;PP=1137;QD=24.4119002614;SC=CGGGAAATCACCCCAGTGTTC;SbPval=0.86;Source=Platypus;TC=58;TCF=52;TCR=6;TR=48;WE=29233091;WS=29233073;set=Platypus	GT:AD:AF:DP	1/1:10,48:0.83:58
chr17	29233089	.	TGTTCCAAGCACCCTACCTCCCGCCGTATTCCATTAGCCTCTAGGGTCAGAGGCTAATGACAGACGGGAAATCAC	T	7630.77	.	AC=1;AF=0.500;ALERT;AN=2;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=10.917;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=-0.841;QD=25.52;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:13,286:0.96:299
chr17	29233110	.	C	A	1230	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=1;MGOF=16;MMLQ=23;MQ=55.34;NF=41;NR=17;PP=1230;QD=21.8064002163;SC=CCCTACCTCCCGCCGTATTCC;SbPval=0.16;Source=Platypus;TC=93;TCF=73;TCR=20;TR=58;WE=29233118;WS=29233100;set=Platypus	GT:AD:AF:DP	1/0:35,58:0.62:93
chr17	29233163	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=3;HapScore=1;MGOF=6;MMLQ=27;MQ=59.36;NF=158;NR=117;PP=2965;QD=20;SC=CGGGAAATCACCCCAGTGTTC;SbPval=0.5;Source=Platypus;TC=275;TCF=158;TCR=117;TR=275;WE=29233171;WS=29233153;set=Platypus	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	29233344	rs2269915	C	T	7316.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr17	29508819	.	AT	A	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=2.027;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:33,16:0.33:49
chr17	29553336	.	G	GACACACACACACAC,GACACACACACACACAC	1489.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=34;set=Intersection	GT:AF:DP	1/2:0.61,0.39:28
chr17	29553485	rs2285892	G	A	10194.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr17	29558082	rs2071009	T	C	983.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	29559932	rs2066736	C	A	2970.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	29563073	.	T	TTG	1204	.	AC=2;AF=1.00;AN=2;BRF=0.35;FR=1.0000;HP=5;HapScore=1;MGOF=1;MMLQ=28;MQ=62.8;NF=7;NR=55;PP=1204;QD=19.8225806452;SC=CCGCTGTTTTTTGTTTTTTTT;SbPval=0.51;Source=Platypus;TC=64;TCF=7;TCR=57;TR=62;WE=29563093;WS=29563063;set=Platypus	GT:AD:AF:DP	1/1:2,62:0.97:64
chr17	29563076	rs59745739	T	TG	5212.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.77;QD=42.04;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	29563085	rs56874702	T	TG	4743.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.83;QD=42.74;SOR=1.190;set=HC	GT:AD:AF:DP	1/1:1,110:0.99:111
chr17	29663625	rs33925668	T	TA	403.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=2.758;MLEAC=2;MLEAF=1.000;MQ=61.34;MQRankSum=0.796;QD=14.42;ReadPosRankSum=-1.115;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:3,25:0.89:28
chr17	29670190	rs7405740	C	G	1487.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	29815404	rs8075239	T	G	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	29843695	rs4349207	C	T	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	29844658	rs3744619	C	G	3074.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.45;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	29844909	rs3744618	A	G	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	29848450	rs2301684	G	T	1816.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	29850698	rs2074147	G	A	5217.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	29852092	rs2023795	A	G	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	29855335	rs12602681	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	29857264	rs2074152	C	T	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	30183663	rs71142094	G	GC	764.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	30183857	rs8068049	T	C	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	30185565	rs9906443	G	A	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	30185892	rs11542477	A	G	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	30186375	.	C	CGGGGGCGGGGCGGCGCA	51.19	.	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	30194932	.	C	T	677.77	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	30216514	.	ATTT	A	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=-0.000;DP=23;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-0.000;QD=4.65;ReadPosRankSum=-1.159;SOR=0.169;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr17	30222002	rs3760454	T	C	2377.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.999;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	30372739	rs1638299	C	T	2199.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:135,111:0.45:246
chr17	30372919	rs2916775	T	G	2518.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.217;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=4.735;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-6.118;QD=14.82;ReadPosRankSum=-2.179;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:94,76:0.45:170
chr17	30372927	rs2916774	G	A	2189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.384;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=11.856;MLEAC=1;MLEAF=0.500;MQ=57.72;MQRankSum=-5.963;QD=15.87;ReadPosRankSum=-1.481;SOR=1.607;set=HC	GT:AD:AF:DP	0/1:80,58:0.42:138
chr17	30372933	rs2916773	A	T	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.708;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=16.392;MLEAC=1;MLEAF=0.500;MQ=57.58;MQRankSum=-5.813;QD=16.59;ReadPosRankSum=-1.704;SOR=2.074;set=HC	GT:AD:AF:DP	0/1:70,49:0.41:119
chr17	30509939	rs6505286	C	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	30519351	rs10615858	CT	C	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.111;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:16,10:0.38:26
chr17	30593336	rs9889253	C	T	598.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.03;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	31204005	rs118039764	G	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	31266419	rs2726134	T	C	7072.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	31266438	rs377006515	A	AAAGG	8688.73	.	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.84;QD=37.78;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	31319033	rs3922357	G	C	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	31319092	rs2188952	T	G	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	31319204	rs10591674	CAA	C	73.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.23;ReadPosRankSum=1.345;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr17	31323728	rs140981292	A	AG	1596.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	31324077	rs28904	C	A	2310.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	31324330	.	A	AGTGT	567	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=0.9998;HP=3;HapScore=1;MGOF=19;MMLQ=16;MQ=60.72;NF=18;NR=7;PP=567;QD=22.8;SC=AGGCGAGTGGAGTGTGTGTGT;SbPval=0.41;Source=Platypus;TC=29;TCF=22;TCR=7;TR=25;WE=31324338;WS=31324320;set=Platypus	GT:AD:AF:DP	1/1:4,25:0.86:29
chr17	31324362	.	T	TGTAG,TGTGTAG	2249.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=86;set=Intersection	GT:AF:DP	1/2:0.17,0.68:40
chr17	31324657	rs28958	T	C	6248.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	31355227	rs58042873	A	AG	1401.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	31618732	rs9893935	A	G	4846.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	31618997	rs112647385	C	A	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	32364722	rs4795846	T	C	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.83;QD=25.38;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	32583132	rs2857657	G	C	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	32583269	rs4586	T	C	7399.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	32684991	rs2072069	G	A	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	32688712	rs159271	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	32961751	rs2058164	C	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	32965275	.	AC	A	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.438;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.666;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.714;QD=2.88;ReadPosRankSum=0.804;SOR=1.282;set=HC	GT:AD:AF:DP	0/1:45,16:0.26:61
chr17	33269648	rs2230553	C	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	33288363	rs9635769	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	33288882	rs931196	T	G	8678.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	33307586	rs12945428	G	A	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	33307700	rs57311484	GC	G	2036.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	33307735	.	A	T	990.77	.	AC=2;AF=1.00;AN=2;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	33309982	.	CTTT	C,CTT	2115.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.456;ClippingRankSum=0.000;DP=164;ExcessHet=3.0103;FS=8.351;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=14.30;ReadPosRankSum=3.178;SOR=1.018;set=HC	GT:AD:AF:DP	1/2:13,33,102:0.22,0.69:148
chr17	33330150	rs4796030	A	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	33331575	rs1052536	C	T	4017.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	33332177	rs1003918	G	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	33332629	rs12948362	G	A	4750.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.99;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	33341834	rs2074519	T	C	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	33353332	rs3926358	T	C	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	33428167	rs45496096	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	33469279	rs1471615	G	C	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	33591987	rs11080334	T	G	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr17	33592591	rs11651240	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	33680840	rs28571667	T	C	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	33689926	rs4796077	T	C	10404.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr17	33690619	rs72825958	G	T	8199.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	33690863	rs4796078	G	T	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:1,105:0.99:106
chr17	33748870	rs17548916	C	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	33749546	rs2586514	A	G	7417.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	33768354	rs3744371	C	T	1801.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	33768383	rs11657183	T	A	2013.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	33875262	rs8073060	T	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	34067306	rs11871358	G	A	429.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	34067892	rs12944858	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	34077232	rs11654604	G	A	15099.77	.	AC=2;AF=1.00;AN=2;DB;DP=576;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chr17	34077428	rs11650416	A	C	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	34088118	.	ATTTTTTT	A	687.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	34090916	.	A	AAAAT,AAAATAAAT	1027.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=48.94;SOR=0.784;set=HC	GT:AD:AF:DP	1/2:0,4,17:0.19,0.81:21
chr17	34090958	rs4796106	C	A	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=34.87;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	34091078	rs4795087	C	G	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	34097039	rs3826404	T	G	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:2,113:0.98:115
chr17	34100350	rs58543174	G	GC	10606.73	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	34151245	rs35907284	C	CT,CTT	374.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.793;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.463;QD=16.29;ReadPosRankSum=1.311;SOR=0.238;set=HC	GT:AD:AF:DP	1/2:2,11,10:0.48,0.43:23
chr17	34160764	rs3785764	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	34165601	rs4251773	G	GT	2705.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	34182341	rs2306630	G	A	6975.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	34183956	rs78655848	G	A	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	34183983	rs77598005	AG	A	1459.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	34185535	rs35283303	AG	A	3218.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	34191406	rs2291299	T	C	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	34249799	rs28722787	T	C	48.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	34251452	rs4796137	G	A	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	34252537	rs2251660	A	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	34257050	rs2280787	C	A	335.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	34257065	rs75109155	C	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.87;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	34257069	rs9913559	T	A	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.27;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	34257313	rs9907295	C	T	2024.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	34257559	rs11871113	G	T	2670.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	34261831	rs9754	A	G	7829.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	34261981	rs10562162	TGCTA	T	10053.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr17	34264862	rs1052266	T	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	34324928	rs41439447	T	C	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	34325248	rs41356845	G	C	439.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	34325532	rs2075746	T	C	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	34325814	rs41505146	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	34328461	rs854625	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	34340161	rs1734953	T	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	34340284	rs1003645	C	T	7077.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr17	34341082	rs1719204	C	G	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	34341558	rs117230744	A	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	34416665	rs1719133	A	G	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr17	34431287	rs1049750	G	T	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=26.62;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	34431961	rs1719146	T	C	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.19;QD=26.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	34842521	rs4796224	A	G	11106.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr17	34862220	rs1109442	T	C	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.981;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	34869150	rs6607296	C	A	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.06;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	34869155	rs8882	G	A	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.07;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	34943347	rs11367622	CT	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.462;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-0.573;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr17	35300494	.	G	GA	191.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=12.582;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.446;QD=2.66;ReadPosRankSum=0.088;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:50,22:0.31:72
chr17	35478362	rs1470452	T	C	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	35486486	rs9789070	C	T	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	35549275	rs2305099	T	C	3446.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	35550158	rs12603097	C	T	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.60;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	35550179	rs12603098	C	T	630.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	35550448	rs2305097	C	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35557289	rs11659129	C	T	2477.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	35562546	rs2278679	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	35608781	rs72010031	CCT	C	1996.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	35608889	rs1519091	G	A	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	35609746	rs2252757	G	A	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	35632979	rs2542660	C	A	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	35696804	rs58654829	G	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.10;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35696820	rs147333574	AAAAG	A	752.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35743010	rs1714987	C	G	2436.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	35771468	rs7211875	C	T	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	35787093	rs368270238	T	C	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-0.734;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:30,22:0.42:52
chr17	35818739	.	TTGTGTG	TTG,T	1142.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=64;set=Intersection	GT:AF:DP	1/1:1.00:29
chr17	35880913	rs145780096	C	T	528.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	35898342	rs2074409	G	T	329.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	35899141	rs1034686	T	A	2990.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	35902225	rs3110623	C	G	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	35956263	rs4795207	T	C	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	35984410	rs7216445	T	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.105;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	35988672	rs7224513	C	T	3575.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.962;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	35995638	rs4622555	T	A	2595.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	36003275	rs3813911	T	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	36003359	rs3813910	A	G	4071.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	36047275	rs1800929	C	T	2534.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	36047417	rs3110641	A	G	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	36058980	rs2269843	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;MQ=60.54;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	36059246	rs2269842	A	C	5349.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	36059377	rs2269841	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	36061297	rs2074429	C	T	408.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	36093863	rs3216929	G	GCAGA	3725.25	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:5,90:0.95:95
chr17	36233930	rs2677184	G	A	4403.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	36234106	rs2677185	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;MQ=59.35;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	36352408	rs11407739	G	GT	3564.73	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:226,251:0.53:477
chr17	36352489	rs4796259	A	C	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=5.606;MLEAC=1;MLEAF=0.500;MQ=57.06;MQRankSum=-1.698;QD=0.15;ReadPosRankSum=-0.928;SOR=1.271;set=HC	GT:AD:AF:DP	0/1:432,59:0.12:491
chr17	36353560	rs111638343	C	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.427;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=4.206;MLEAC=1;MLEAF=0.500;MQ=49.94;MQRankSum=-6.191;QD=2.58;ReadPosRankSum=-1.402;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:115,27:0.19:142
chr17	36353761	rs62074778	C	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:311,132:0.30:443
chr17	36357280	rs149632022	TA	T	398.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=515;ExcessHet=3.0103;FS=2.291;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-10.884;QD=1.08;ReadPosRankSum=0.233;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:279,91:0.25:370
chr17	36357295	rs79239780	A	G	1740.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.865;ClippingRankSum=0.000;DB;DP=393;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-2.076;QD=4.62;ReadPosRankSum=0.887;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:246,131:0.35:377
chr17	36357835	rs1848308	G	A	1738.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:192,101:0.34:293
chr17	36358189	rs5820175	GATATATATATAT	G,GATATATATATATATAT	2090.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.322;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.150;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.77;MQRankSum=-0.724;QD=30.75;ReadPosRankSum=1.325;SOR=1.089;set=HC	GT:AD:AF:DP	1/2:1,52,15:0.76,0.22:68
chr17	36358847	rs77355093	T	A	5561.77	.	AC=1;AF=0.500;AN=2;DB;DP=1079;set=Intersection	GT:AD:AF:DP	0/1:751,323:0.30:1074
chr17	36374963	rs11389346	TA	T	426.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.637;QD=3.65;ReadPosRankSum=2.040;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:63,54:0.46:117
chr17	36384810	rs142086381	A	G	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:66,21:0.24:87
chr17	36384868	rs71252892	C	G	790.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:119,48:0.29:167
chr17	36398089	rs7221889	C	A	686.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-5.848;QD=3.25;ReadPosRankSum=-0.630;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:163,48:0.23:211
chr17	36398125	.	GTC	G	1260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137;ClippingRankSum=0.000;DP=333;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-9.312;QD=4.26;ReadPosRankSum=1.002;SOR=0.579;set=HC	GT:AD:AF:DP	0/1:216,80:0.27:296
chr17	36398156	rs147730015	ACACACACACC	A	2140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.69;MQRankSum=4.021;QD=5.29;ReadPosRankSum=5.159;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:284,121:0.30:405
chr17	36584628	.	G	GGGC	271.75	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	36617210	rs9898977	A	G	9224.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr17	36619455	rs58915644	C	T	7392.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	36622482	rs8075324	G	C	16484.77	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,628:1.00:628
chr17	36638255	rs7503829	C	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=25.20;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	36642473	rs71138626	CT	C	825.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=1.427;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.471;QD=12.32;ReadPosRankSum=-1.330;SOR=0.418;set=HC	GT:AD:AF:DP	1/1:9,58:0.87:67
chr17	36646291	rs12937928	A	G	5437.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	36646386	rs9891156	A	G	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	36666551	rs62074752	T	C	2838.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	36718610	rs6503709	T	A	1977.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	36720598	rs117581201	C	T	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	36734700	rs7503695	T	C	3630.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	36734706	rs144253512	CAGCCGG	C	3928.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	36861983	rs17855918	T	C	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	36889466	rs5820264	G	GCCTGC	13701.73	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:2,289:0.99:291
chr17	36896751	rs56171152	G	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	36908985	rs78060524	TGAA	T	1897.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	36909061	rs228274	A	G	2504.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.05;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	36909499	rs4907	A	T	10063.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr17	36927690	rs25540	C	CTAAG	1158.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	36932200	rs228293	C	G	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	36934124	rs2075061	C	T	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	36966701	rs3744073	G	T	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	36971804	rs143550966	C	CAAAT	4443.73	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:5,103:0.95:108
chr17	36993655	rs645686	T	C	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	36997288	rs595306	T	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;MQ=58.95;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	37010150	rs923370	G	A	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	37055077	rs17590541	G	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	37070658	rs525989	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	37070737	rs525767	A	G	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	37071189	rs2241009	C	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	37075286	rs144614922	A	AGGGCGAGGCCCGTGG	16829.73	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:2,373:0.99:375
chr17	37094715	rs57980928	CT	C	96.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.20;ReadPosRankSum=0.437;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr17	37101380	rs9906595	T	C	4367.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	37239671	rs9891236	A	G	2052.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	37253316	rs4795349	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	37265378	rs16490	C	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	37317672	rs511163	C	G	1302.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	37349655	rs16531	T	C	16506.77	.	AC=2;AF=1.00;AN=2;DB;DP=644;set=Intersection	GT:AD:AF:DP	1/1:0,644:1.00:644
chr17	37349710	rs16532	C	G	15011.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr17	37351285	rs534012	T	C	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.06;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	37357653	.	C	CT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.199;QD=0.31;ReadPosRankSum=-0.829;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:144,35:0.20:179
chr17	37359427	.	A	ATT	417.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=1.364;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.504;QD=8.70;ReadPosRankSum=1.054;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:21,27:0.56:48
chr17	37360889	.	G	T	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.473;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=11.029;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=-10.928;QD=0.94;ReadPosRankSum=0.313;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:149,16:0.10:165
chr17	37360895	.	G	A	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.867;ClippingRankSum=0.000;DP=141;ExcessHet=3.0103;FS=13.713;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-10.769;QD=1.08;ReadPosRankSum=-0.071;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:125,14:0.10:139
chr17	37360904	.	C	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=12.501;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-9.277;QD=2.03;ReadPosRankSum=-1.517;SOR=0.077;set=HC	GT:AD:AF:DP	0/1:95,12:0.11:107
chr17	37360910	.	A	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.383;ClippingRankSum=0.000;DP=91;ExcessHet=3.0103;FS=8.962;MLEAC=1;MLEAF=0.500;MQ=58.95;MQRankSum=-8.866;QD=1.94;ReadPosRankSum=-2.151;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:80,10:0.11:90
chr17	37360912	.	T	G	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.054;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=8.608;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-8.712;QD=1.73;ReadPosRankSum=-2.477;SOR=0.081;set=HC	GT:AD:AF:DP	0/1:77,10:0.11:87
chr17	37360918	.	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=6.780;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-8.147;QD=1.58;ReadPosRankSum=-1.583;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:73,7:0.09:80
chr17	37369416	rs1859262	G	A	4145.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	37369925	.	C	CT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.381;QD=2.36;ReadPosRankSum=-0.528;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr17	37396201	rs34473775	G	T	3560.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	37399364	rs2338795	T	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	37399379	rs2879258	G	T	1504.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	37401051	rs11078895	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	37410700	rs752314	C	T	611.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	37410892	rs2879259	C	G	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	37417575	rs3744348	C	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	37421767	rs2061338	T	C	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	37425238	rs1966916	T	G	318.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	37425262	rs1966915	A	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	37427114	rs11307198	TA	T	584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=4.832;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=0.815;QD=10.44;ReadPosRankSum=-0.272;SOR=1.559;set=HC	GT:AD:AF:DP	0/1:13,43:0.77:56
chr17	37580203	rs7405667	T	C	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	37587534	rs35691977	CT	C	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:14,45:0.76:59
chr17	37657460	rs11406230	C	CT	1307.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=17.485;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.394;QD=16.55;ReadPosRankSum=-1.740;SOR=2.267;set=HC	GT:AD:AF:DP	1/1:9,70:0.89:79
chr17	37671910	rs8070799	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	37783787	rs3751903	C	G	7313.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	37814080	rs1877031	G	A	8430.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	37815899	rs11658786	G	A	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	37821435	rs931992	G	T	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	37822311	rs1053651	A	C	8747.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	37829129	rs2247862	A	G	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	37830447	rs2934956	T	A	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	37830900	rs2941504	A	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	37831035	rs1565922	A	G	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	37866005	rs1810132	C	T	11758.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr17	37868715	rs4252627	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	37879588	rs1136201	A	G	2975.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	37879762	rs903506	G	A	7347.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	37884037	rs1058808	C	G	7274.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	37898543	rs2952142	T	C	12555.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr17	37902887	rs150443878	GAAAAAGAAAAAGA	G	5170.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.38;QD=42.73;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	37921899	rs2952141	C	T	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	37922259	rs907092	G	A	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	37985801	rs3816470	A	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	38020419	rs1453559	T	C	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	38024626	rs11557466	C	T	4392.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	38028634	rs11557467	G	T	1845.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	38031674	rs10852935	C	T	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	38031714	rs10852936	C	T	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	38062196	rs2305480	G	A	6058.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	38062217	rs2305479	C	T	6976.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	38063381	rs883770	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	38064405	rs11078927	C	T	8500.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,323:1.00:323
chr17	38064469	rs11078928	T	C	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,374:1.00:374
chr17	38064577	.	CAAA	C	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.906;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=0.257;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:13,13:0.50:26
chr17	38066240	rs2290400	T	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.302;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	38066267	rs1008723	G	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	38097602	.	TAAAA	T	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.79;MQRankSum=-0.902;QD=1.84;ReadPosRankSum=0.473;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr17	38122680	rs7212938	G	T	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	38146482	.	CT	C	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=3.460;QD=0.86;ReadPosRankSum=-0.478;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:88,30:0.25:118
chr17	38182844	rs2302775	T	C	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	38188844	rs7502514	A	G	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	38189055	rs3935280	A	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	38189793	rs11078934	T	C	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	38191924	rs6503534	A	G	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	38210057	rs8070452	C	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	38252582	.	G	GT	1157.73	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	38252660	rs883871	G	A	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.02;SOR=1.380;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	38252667	rs939346	G	A	5136.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.81;SOR=1.368;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	38253212	rs2314339	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	38253228	rs2102928	T	C	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	38256185	rs4795424	A	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	38296626	rs71152646	AAC	A	195.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.98;QD=27.96;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	38297087	.	C	G	30	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=9;HapScore=2;MGOF=9;MMLQ=23;MQ=56.44;NF=0;NR=4;PP=30;QD=16.1928031368;SC=CGGCCGGGGGCGGGGTGTAGG;SbPval=0.04;Source=Platypus;TC=12;TCF=7;TCR=5;TR=4;WE=38297095;WS=38297077;set=Platypus	GT:AD:AF:DP	0/1:8,4:0.33:12
chr17	38324766	rs11327454	AT	A	596.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	38334359	rs66989091	A	AG	1360.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	38346802	rs56304903	C	G	8644.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	38348616	rs56357916	G	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	38451739	.	TA	T	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.804;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.472;QD=2.47;ReadPosRankSum=-2.952;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:37,18:0.33:55
chr17	38519291	rs502041	C	G	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	38556770	rs471692	T	C	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	38563710	rs558068	C	G	125.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	38566396	rs2715548	G	A	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	38568894	rs367747137	TCAAA	T	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=5.089;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.692;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr17	38572366	rs2586112	G	A	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	38609187	rs1009727	G	A	3737.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	38609207	rs1009728	T	C	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	38609431	rs5820347	G	GAC	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:6,57:0.90:63
chr17	38640744	rs2290207	C	T	4262.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	38640992	rs2290206	A	G	1221.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	38644752	rs34377860	G	A	2733.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.34;SOR=0.957;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	38645125	rs3764424	A	G	4376.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	38645331	rs34879399	C	T	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	38786451	rs4890092	A	T	1154.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	38813824	rs8068721	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.35;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	38813828	rs11412331	G	GT	532.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	38816526	rs917593	A	G	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.84;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	38816595	rs2008469	T	C	434.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	38905477	rs10491127	T	G	6592.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr17	38910811	rs34344021	G	T	1924.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	38910970	.	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.325;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=2.522;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.11;ReadPosRankSum=1.334;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr17	38911212	rs12951078	G	A	4409.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	38911363	rs12951399	G	A	4040.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,153:0.99:154
chr17	38922718	rs35253595	TTC	T	953.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.74;QD=34.06;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	38934118	rs2286648	C	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	38935812	rs981684	A	G	3178.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=-0.041;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:2,125:0.98:127
chr17	38936659	rs17558560	C	T	5842.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	38938216	rs17473777	T	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	38950272	rs2250671	T	C	4398.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	38953540	rs3813038	A	G	10110.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr17	38954687	rs9914044	C	T	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	38955173	rs7222207	G	A	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	38955274	rs7224150	A	C	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	38975328	rs17855579	G	A	3041.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.711;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=8.153;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.14;ReadPosRankSum=4.734;SOR=1.116;set=HC	GT:AD:AF:DP	1/1:9,112:0.93:121
chr17	38976978	rs6503559	C	A	2844.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	38976998	rs1799873	G	A	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	38977048	rs1799874	T	C	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	38978462	rs77919366	C	T	21252.77	.	AC=2;AF=1.00;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	1/1:0,803:1.00:803
chr17	38978536	rs4261597	A	C	23698.77	.	AC=2;AF=1.00;AN=2;DB;DP=894;set=Intersection	GT:AD:AF:DP	1/1:0,893:1.00:893
chr17	38990834	rs2240078	G	C	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	38991032	rs6694	T	A	9473.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	39038941	rs149855322	T	TTTTA	2853.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:4,69:0.95:73
chr17	39240426	rs11658607	G	A	17125.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr17	39240504	rs11655310	A	G	18357.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.93;QD=42.20;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	39240504	.	AGCCAAGA	GGCCAAGA,GGCCAAGT	2944	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=1;MMLQ=23;MQ=46.67;SC=CCAGGGCTGCAGCCAAGACCT;SbPval=0.52;Source=Platypus;WE=39240519;set=Platypus	GT:AF:DP	0/1:0.99:462
chr17	39240511	rs383835	A	T	8761.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.188;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=90.684;MLEAC=2;MLEAF=1.000;MQ=53.54;MQRankSum=7.077;QD=21.96;ReadPosRankSum=6.029;SOR=0.221;set=HC	GT:AD:AF:DP	1/1:35,364:0.91:399
chr17	39240661	rs11650484	C	G	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	39240790	.	G	A	2962	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=6;HapScore=1;MMLQ=28;MQ=48.52;NF=11;NR=34;PP=2962;QD=20;SC=ACCTGCTGCCGCCCCAGCTGC;SbPval=0.95;Source=Platypus;TC=57;TCF=22;TCR=35;TR=45;WE=39240803;WS=39240780;set=Platypus	GT:AD:AF:DP	1/1:12,45:0.79:57
chr17	39254335	rs201764113	A	AT	11441.73	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	39254444	rs6416913	T	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	39258027	rs7503699	G	A	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=26.01;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	39258495	rs168397	G	A	1331.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	39261560	rs349792	T	A	990.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.15;QD=31.96;SOR=6.932;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	39261608	rs349791	G	A	5540.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.47;QD=46.56;SOR=2.953;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	39261611	rs11654665	G	A	5622.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.11;QD=42.92;SOR=2.470;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	39261933	rs7207685	C	T	7824.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	39261949	rs7212474	T	C	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	39274069	rs349771	G	C	4507.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:10,189:0.95:199
chr17	39274518	rs9897031	C	T	9972.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr17	39305956	rs1497383	G	A	6626.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	39333956	rs377518	T	C	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	39334133	rs389784	T	C	5689.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	39334456	rs493514	G	A	7749.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	39340597	rs452216	G	A	4035.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	39340707	rs398825	C	T	6404.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	39340795	.	ACGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	A	3599.73	.	AC=2;AF=1.00;AN=2;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.62;QD=41.38;SOR=1.090;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	39340812	.	T	C	1606	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MMLQ=28;NF=24;NR=40;PP=1606;QD=25.637050196;SC=CAGCTGGACATACCACAGCTG;Source=Platypus;TCF=24;TR=64;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:1,64:0.98:65
chr17	39340826	.	T	C	1092	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=6;HapScore=1;MGOF=41;MMLQ=23;MQ=53.42;NF=23;NR=29;PP=1092;QD=21.6686771644;SC=ACAGCTGGGGTGGCAGGTGGT;SbPval=0.5;Source=Platypus;TC=53;TCF=23;TCR=30;TR=52;WE=39340834;WS=39340802;set=Platypus	GT:AD:AF:DP	1/1:1,52:0.98:53
chr17	39340843	.	GCAGAGTGGG	ACAGACTGGG,ACAGAGTGGA	1602	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.31;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=40;MMLQ=28;MQ=54.88;NF=2,33;NR=9,19;PP=334,1602;QD=35.2243522602;SC=TGGTCTGACAGCAGAGTGGGC;SbPval=0.04;Source=Platypus;TC=70;TCF=37;TCR=33;TR=11,52;WE=39340860;WS=39340833;set=Platypus	GT:AF:DP	0/1:0.16:70
chr17	39340910	rs2320231	T	C	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	39341158	rs452531	G	A	3758.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	39341266	rs449817	A	G	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	39341294	rs385122	T	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	39346518	rs238824	T	C	12116.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	39346595	rs11283848	T	TGCTGTGGGTCCAGCTGCTGCCAGCCTA	15453.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	39406291	rs199605390	T	C	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=34.404;MLEAC=1;MLEAF=0.500;MQ=58.34;MQRankSum=-11.643;QD=4.01;ReadPosRankSum=-3.617;SOR=2.251;set=HC	GT:AD:AF:DP	0/1:330,60:0.15:390
chr17	39406299	.	A	G	1862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DP=414;ExcessHet=3.0103;FS=15.873;MLEAC=1;MLEAF=0.500;MQ=58.14;MQRankSum=-11.505;QD=4.52;ReadPosRankSum=-3.628;SOR=1.951;set=HC	GT:AD:AF:DP	0/1:336,76:0.18:412
chr17	39406343	rs148655704	A	G	3895.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:329,203:0.38:532
chr17	39406409	rs2191379	C	A	20891.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.22;QD=34.36;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,608:1.00:608
chr17	39406409	.	CCAGCTGCTGTCAGCCTTT	ACAGCTGCTGCCAGCCTTC,ACAGCTGCTGTCAGCCTTT	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=24;MQ=56.04;NF=108,281;NR=119,302;PP=2934,2962;QD=20;SC=ACCTGTGTGTCCAGCTGCTGT;SbPval=0.57;Source=Platypus;TC=583;TCF=281;TCR=302;TR=227,583;WE=39406435;WS=39406399;set=Platypus	GT:AF:DP	0/1:0.39:583
chr17	39406419	rs151209798	T	C	9191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102;ClippingRankSum=0.000;DB;DP=579;ExcessHet=3.0103;FS=1.110;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-12.934;QD=15.93;ReadPosRankSum=1.759;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:327,250:0.43:577
chr17	39406427	rs139224734	T	C	8989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185;ClippingRankSum=0.000;DB;DP=552;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-12.368;QD=16.35;ReadPosRankSum=-0.541;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:311,239:0.43:550
chr17	39406447	rs3967754	A	G	9435.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:198,260:0.57:458
chr17	39406461	rs111927217	C	A	4889.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:241,145:0.38:386
chr17	39406474	.	C	A	4488.77	.	AC=1;AF=0.500;AN=2;DP=337;set=Intersection	GT:AD:AF:DP	0/1:215,121:0.36:336
chr17	39406492	rs369118638	T	C	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:168,63:0.27:231
chr17	39406539	rs371244902	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr17	39432562	rs9893993	A	T	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	39458765	rs1005197	A	G	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	39459167	rs1005196	G	A	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	39593768	rs897416	A	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	39593872	rs897415	A	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	39594809	rs2071612	C	T	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	39594934	rs71155140	AC	A	24772.73	.	AC=2;AF=1.00;AN=2;DB;DP=871;set=Intersection	GT:AD:AF:DP	1/1:3,834:1.00:837
chr17	39595661	rs2071611	T	A	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	39596393	rs12601328	C	A	7730.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	39596402	rs2071610	G	A	8084.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.00;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	39596538	rs2071609	C	T	9293.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr17	39596611	rs1350046	T	C	12246.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr17	39616288	rs3840884	TG	T	487.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	39616430	rs2604953	G	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:1,122:0.99:123
chr17	39619093	rs2604954	GT	AC	3375.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	39619115	rs2071563	G	A	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	39619219	rs2857257	G	A	5304.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	39619388	rs4796636	C	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	39620399	rs12948056	C	T	3000.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	39635340	rs2301352	C	T	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	39636044	rs2011243	G	A	2822.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	39645088	rs4796716	A	G	1225.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	39645572	rs34752082	C	A	1401.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	39659183	rs4796698	G	A	7552.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr17	39659194	rs4796697	T	C	7048.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr17	39659529	rs7211835	T	C	3266.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	39659913	rs9891361	G	A	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	39661689	rs8182306	G	A	19613.77	.	AC=2;AF=1.00;AN=2;DB;DP=737;set=Intersection	GT:AD:AF:DP	1/1:0,733:1.00:733
chr17	39670912	rs897420	G	C	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	39671045	rs897421	T	C	5404.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	39674641	rs1050784	T	C	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	39680580	rs1869719	A	C	8610.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:1,317:1.00:318
chr17	39680796	rs1869720	T	A	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	39681475	rs4601	A	G	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	39684321	rs4602	G	C	2751.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	39684410	rs11550883	G	A	2267.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	39723451	rs6503636	A	G	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	39723990	rs3890472	T	A	7225.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	39724047	rs1008753	T	C	2893.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	39726276	rs3816510	C	A	2271.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	39727816	rs8075921	T	G	14227.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr17	39728050	rs8070680	G	A	22667.77	.	AC=2;AF=1.00;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	1/1:0,880:1.00:880
chr17	39740303	rs200977988	A	ATC	910.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.56;ReadPosRankSum=-1.206;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:6,49:0.89:55
chr17	39742894	rs3826551	G	A	10131.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=43.48;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	39742898	rs11551758	GC	AT	10096.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.69;SOR=1.525;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	39766504	rs7406899	A	G	2173.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	39767744	rs4796681	A	G	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	39767836	rs2100509	G	A	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	39923614	rs12942034	A	G	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=1.700;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	39925925	rs7405731	A	G	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	39959189	rs1065029	C	G	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	39962951	rs2304494	C	T	3437.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	39964032	rs149683818	G	A	3365.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	39966168	rs2304493	T	G	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	39967087	rs1469863	C	T	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr17	39967442	rs13412	T	C	10924.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.761;set=HC	GT:AD:AF:DP	1/1:0,422:1.00:422
chr17	39968701	rs729636	T	G	17154.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,637:1.00:637
chr17	39977862	rs8072866	C	T	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	39987130	rs4796712	T	C	11578.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,457:1.00:457
chr17	39991801	rs71373456	T	G	2495.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	39991848	rs148849516	CGCTG	C	5007.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	40024023	rs7217218	A	T	1463.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	40024895	rs8079008	A	G	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	40025285	rs9914829	A	G	12774.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,486:1.00:486
chr17	40035338	rs71373464	A	T	914.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	40048613	rs8065502	A	G	4005.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	40049171	rs4796735	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	40049473	rs4796736	A	G	1528.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	40052842	rs67473931	G	A	2246.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	40053021	rs11652326	T	C	1195.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	40058211	rs60769720	G	A	2305.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	40062719	rs12948100	T	C	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	40065774	rs2304497	T	G	7754.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	40094835	rs3809878	C	T	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	40101597	rs35481109	CA	C	511.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.971;QD=10.03;ReadPosRankSum=0.458;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:9,42:0.82:51
chr17	40104384	rs140105127	C	CA	125.73	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	40106868	.	CA	C	283.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=1.537;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.830;QD=6.92;ReadPosRankSum=0.689;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:11,30:0.73:41
chr17	40120771	rs8078650	T	G	2979.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	40146970	rs6503679	G	A	5321.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	40152431	rs374909941	CT	C	561.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	40169519	rs4796758	G	T	2748.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	40173851	rs9894001	A	C	5814.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.319;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.401;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.31;ReadPosRankSum=-0.551;SOR=0.522;set=HC	GT:AD:AF:DP	1/1:1,220:1.00:221
chr17	40186128	rs4277396	C	A	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	40215180	rs4796765	A	G	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	40257163	rs2074158	T	C	4778.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	40259980	rs2074154	A	T	16665.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:3,681:1.00:684
chr17	40263400	rs35118457	C	T	8431.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	40269280	rs73986522	A	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	40270040	rs146062629	G	GGA	2635.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	40270053	rs35478347	C	A	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=38.34;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	40270062	rs73986523	T	C	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.77;QD=38.36;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	40270084	.	GAGAGAGAGA	G	2072.73	.	AC=2;AF=1.00;AN=2;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	40270107	.	G	GGT	1405.73	.	AC=2;AF=1.00;AN=2;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	40270119	rs71835160	GGAGA	G	1096.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	40270238	rs2074164	G	C	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	40271757	rs730086	G	A	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	40271970	rs8072215	A	G	658.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	40272406	rs35184688	G	C	5207.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	40272594	rs2285657	C	A	1389.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	40274873	rs1122326	A	C	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	40278081	rs2240010	T	A	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	40280944	rs739637	G	C	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	40314213	rs60075634	A	C	6051.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	40314498	rs61160591	A	G	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	40318296	rs28459794	A	G	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	40322252	rs939881	T	C	8003.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr17	40336500	.	GGCA	G	230.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DP=252;ExcessHet=3.0103;FS=0.875;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.050;QD=1.13;ReadPosRankSum=-0.232;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:184,20:0.10:204
chr17	40353576	.	A	G	786.77	.	AC=2;AF=1.00;AN=2;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	40359505	rs66538430	GCA	G	1473.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=1.951;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=0.492;QD=22.00;ReadPosRankSum=0.388;SOR=0.276;set=HC	GT:AD:AF:DP	1/1:7,60:0.90:67
chr17	40363936	.	G	C	3720.77	.	AC=2;AF=1.00;AN=2;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	40368183	.	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.960;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.651;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:24,10:0.29:34
chr17	40447558	rs2293158	T	C	3580.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	40462796	.	TTG	T	153.73	.	AC=1;AF=0.500;AN=2;DP=67;set=Intersection	GT:AD:AF:DP	0/1:37,13:0.26:50
chr17	40476667	rs17881940	C	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=5.926;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	40481529	rs2293152	G	C	4848.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	40490539	.	T	G	779	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=1;HapScore=1;MGOF=21;MMLQ=28;MQ=55.03;NF=28;NR=5;PP=779;QD=24.6597337136;SC=GAATACTCCTTGACCTGAGGG;SbPval=0.51;Source=Platypus;TC=35;TCF=30;TCR=5;TR=33;WE=40490547;WS=40490532;set=Platypus	GT:AD:AF:DP	1/1:2,33:0.94:35
chr17	40491273	rs61308380	C	CA	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.971;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr17	40497828	rs12601611	C	T	365.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.64;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	40500265	rs2306581	C	A	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	40619937	rs4796668	A	G	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	40642452	rs9899168	T	C	5449.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	40646803	rs11651671	G	A	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	40672695	rs74768295	C	T	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	40689455	rs659497	T	C	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	40689613	rs2071046	G	C	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	40696233	rs86312	C	G	4670.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	40699291	rs607740	G	A	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	40699332	rs607795	T	C	3772.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	40699475	rs67843205	G	GC	1457.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	40700448	rs2854973	C	G	7112.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	40705100	rs597255	C	T	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	40705955	rs2676530	C	T	26132.77	.	AC=2;AF=1.00;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	1/1:0,982:1.00:982
chr17	40706906	rs605059	G	A	4119.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chr17	40714804	rs615942	C	A	8328.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr17	40716520	rs598126	A	G	9489.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr17	40720605	rs646174	G	A	4054.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	40721360	rs632758	C	A	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr17	40725656	rs2292752	G	C	2977.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	40734987	rs35747013	AT	A	240.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.05;ReadPosRankSum=0.590;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr17	40735469	rs1517002	T	G	3544.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr17	40737043	rs9889580	G	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	40766546	rs1045710	C	G	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	40811781	rs2292750	C	T	15419.77	.	AC=2;AF=1.00;AN=2;DB;DP=582;set=Intersection	GT:AD:AF:DP	1/1:0,582:1.00:582
chr17	40811919	rs525911	A	G	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	40817990	rs7225374	G	A	2947.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	40818451	rs1554227	G	A	16465.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:22,631:0.97:653
chr17	40818699	rs1046097	A	G	9420.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr17	40822291	.	C	G	1346.77	.	AC=2;AF=1.00;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	40822308	rs8071056	C	A	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.44;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	40826525	rs35595844	AAGG	A	1346.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	40835819	rs36108420	A	AT	7201.73	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	40835922	rs2271029	A	C	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.24;QD=25.49;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	40836975	rs9889373	A	G	3992.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	40841397	rs2271028	C	T	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	40842084	rs3760386	G	A	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	40848342	rs36083265	AT	A	73.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=1.922;QD=6.67;ReadPosRankSum=0.789;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:3,8:0.73:11
chr17	40849842	rs1553468	A	G	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	40850552	rs71359582	C	CGT	422.75	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr17	40854534	rs3841620	G	GT	4127.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	40856573	.	G	GA	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.074;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.62;ReadPosRankSum=0.337;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:52,12:0.19:64
chr17	40874643	rs11298431	CA	C	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=5.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=1.368;SOR=1.765;set=HC	GT:AD:AF:DP	0/1:10,34:0.77:44
chr17	40945874	rs34930579	C	CT	321.27	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=0.000;QD=10.36;ReadPosRankSum=-0.736;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr17	40947694	rs56099549	C	T	10429.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr17	40986454	.	GGA	G	470.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.649;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=7.98;ReadPosRankSum=-0.188;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chr17	41063279	.	G	A	23319.77	.	AC=2;AF=1.00;AN=2;DP=885;set=Intersection	GT:AD:AF:DP	1/1:2,882:1.00:884
chr17	41103938	rs534720	T	C	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	41113131	rs35166621	CA	C	2058.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	41113543	rs2670865	C	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	41116234	rs690941	G	A	8790.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:1,325:1.00:326
chr17	41116291	rs11278824	CAGCCCT	C	6061.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	41116565	rs690971	G	T	3706.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	41116723	rs690979	G	A	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	41121210	rs113173233	GC	G	741.06	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.170;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=8.735;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.17;ReadPosRankSum=0.259;SOR=1.447;set=HC	GT:AD:AF:DP	1/1:4,31:0.89:35
chr17	41121217	rs7217553	G	A	1497.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.822;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=4.175;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=44.05;ReadPosRankSum=1.683;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:1,33:0.97:34
chr17	41121263	rs4793187	G	A	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.20;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	41122443	rs2670866	T	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	41132578	rs692074	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	41133071	rs1708875	T	C	3686.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	41133242	rs550285	G	A	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	41150949	rs2271539	G	A	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	41150983	rs691954	T	C	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	41154817	rs11871636	A	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.769;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	41164126	rs692651	A	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	41165493	rs588703	A	G	5524.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	41165734	rs443759	C	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	41165878	rs13229	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	41167957	rs455055	C	A	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	41170898	rs429464	T	C	3052.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	41170943	rs55845054	GTAA	G	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	41197939	.	A	AT	201.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.831;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=0.062;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:11,22:0.67:33
chr17	41251931	rs799923	G	A	4772.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	41327684	rs10684756	C	CTG	6428.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	41330234	rs377016401	TA	T	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.654;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:11,8:0.42:19
chr17	41332804	rs9904555	T	C	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.10;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	41361881	rs11322550	AT	A	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=0.540;SOR=1.139;set=HC	GT:AD:AF:DP	0/1:35,17:0.33:52
chr17	41465867	rs12600401	A	G	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chr17	41465968	rs377041387	T	C	5151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=14.853;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=31.794;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.699;QD=14.89;ReadPosRankSum=-10.230;SOR=1.778;set=HC	GT:AD:AF:DP	0/1:215,131:0.38:346
chr17	41465970	rs371420425	A	G	4974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=12.475;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=26.832;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.692;QD=14.63;ReadPosRankSum=-10.265;SOR=1.648;set=HC	GT:AD:AF:DP	0/1:211,129:0.38:340
chr17	41465973	.	A	C	4722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.170;ClippingRankSum=0.000;DP=335;ExcessHet=3.0103;FS=22.624;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.787;QD=14.10;ReadPosRankSum=-8.874;SOR=1.558;set=HC	GT:AD:AF:DP	0/1:211,124:0.37:335
chr17	41465975	rs142037739	T	C	4566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.844;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=19.722;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-4.785;QD=13.76;ReadPosRankSum=-8.103;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:209,123:0.37:332
chr17	41465989	rs147059896	A	G	3892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.372;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=8.394;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.348;QD=12.93;ReadPosRankSum=-4.364;SOR=1.126;set=HC	GT:AD:AF:DP	0/1:192,109:0.36:301
chr17	41465993	rs145825652	T	C	3975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=11.106;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=7.486;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.378;QD=13.34;ReadPosRankSum=-3.423;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:191,107:0.36:298
chr17	41465994	.	T	C	3955.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.056;ClippingRankSum=0.000;DP=293;ExcessHet=3.0103;FS=6.616;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-4.354;QD=13.50;ReadPosRankSum=-3.562;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:187,106:0.36:293
chr17	41466000	.	C	CGAGGGG	4039.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.436;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=2.101;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=-4.290;QD=14.48;ReadPosRankSum=-2.993;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:176,103:0.37:279
chr17	41466002	.	C	CGAG	4042.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.825;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-4.445;QD=15.20;ReadPosRankSum=-1.358;SOR=0.690;set=HC	GT:AD:AF:DP	0/1:172,94:0.35:266
chr17	41466003	.	T	G	3628.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=10.241;ClippingRankSum=0.000;DP=261;ExcessHet=3.0103;FS=0.479;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-4.570;QD=13.90;ReadPosRankSum=-0.025;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:172,89:0.34:261
chr17	41466007	.	C	CG	3508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.920;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=3.623;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-4.557;QD=13.34;ReadPosRankSum=0.420;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:173,90:0.34:263
chr17	41466009	.	GC	G	4583.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.178;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-3.476;QD=17.84;ReadPosRankSum=0.180;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:166,91:0.35:257
chr17	41466019	.	T	G	4804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.536;ClippingRankSum=0.000;DP=278;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-2.840;QD=17.28;ReadPosRankSum=-2.337;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:153,125:0.45:278
chr17	41466022	rs79526563	G	C	4765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.744;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.944;MLEAC=1;MLEAF=0.500;MQ=59.80;MQRankSum=-2.738;QD=17.72;ReadPosRankSum=-2.673;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:143,126:0.47:269
chr17	41466035	rs79889672	A	C	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:123,129:0.51:252
chr17	41466049	rs62080661	A	G	4913.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.062;QD=20.91;ReadPosRankSum=2.229;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:108,127:0.54:235
chr17	41466055	rs62080662	G	C	4932.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.265;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.994;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.444;QD=22.42;ReadPosRankSum=2.040;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:95,125:0.57:220
chr17	41466073	rs4986155	T	C	2727.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:77,120:0.61:197
chr17	41466096	rs62080664	A	G	2697.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:51,111:0.69:162
chr17	41466108	rs62080665	G	C	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:49,102:0.68:151
chr17	41466120	rs66825422	GCGGCGCATGGA	G	3472.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:40,88:0.69:128
chr17	41477710	rs3179287	A	G	533.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	41522213	rs7207008	T	A	2113.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	41561601	rs140026870	CGGAAGGA	C	8081.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	41566969	rs1807204	T	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=2.200;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	41570427	rs2279191	T	C	1355.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	41573730	rs12602059	T	C	2635.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	41582284	rs55956367	A	G	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	41585657	rs2293014	G	A	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	41590928	rs9893137	C	T	3670.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	41598940	rs2271957	T	C	5214.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	41599383	rs2271958	G	A	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	41603882	rs9915640	T	C	2316.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	41610398	rs2242598	C	T	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	41613691	rs56357945	G	T	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	41622507	rs79868029	A	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	41622562	.	CGT	C	647.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.878;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.275;QD=6.48;ReadPosRankSum=0.013;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:63,37:0.37:100
chr17	41622740	rs2271959	G	T	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	41846964	rs1230403	T	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	41847300	rs58242860	T	C	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	41886190	rs17675122	A	G	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	41891437	rs17742929	G	A	4992.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	41891473	rs2066725	A	G	6028.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:2,218:0.99:220
chr17	41893360	rs8081646	T	C	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr17	41907509	rs60335331	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	41930569	rs4793040	A	G	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	41931375	rs12453522	A	G	10429.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,396:1.00:396
chr17	41935064	rs72836564	G	A	2554.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	41955158	rs231521	A	G	6953.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	41959808	rs124721	T	C	24850.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:1,924:1.00:925
chr17	41960343	rs124719	T	C	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.38;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	41960633	rs412849	CG	GC	9883.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	41961451	rs231518	T	C	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	41987062	rs3744416	A	G	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	41994794	rs231458	C	T	2870.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	42018471	rs231473	T	C	11367.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr17	42030531	rs1058046	G	C	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	42030743	rs229969	G	C	6850.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	42031331	rs2070592	C	T	1868.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.60;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	42035360	rs62080323	G	C	1323.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	42083840	rs228770	T	C	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	42084067	rs55708447	T	C	3765.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	42085150	rs228773	T	C	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	42085672	rs147086401	AATGAG	A	1774.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	42113807	rs9675211	T	C	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	42156471	rs376816	A	C	10761.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr17	42157739	rs850856	C	T	14720.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr17	42158310	rs377963	T	G	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42162694	rs56379369	CT	C	349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.651;QD=11.28;ReadPosRankSum=-0.805;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:5,26:0.84:31
chr17	42164885	rs228757	G	C	15524.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr17	42170181	rs67111880	TG	T	472.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	42170289	rs368328	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	42171206	rs454192	T	C	9287.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr17	42188311	rs228767	C	G	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	42264962	rs4793082	A	G	3311.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	42329004	rs13306780	A	C	3012.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	42392077	rs68030960	T	C	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	42392622	rs708386	T	C	7463.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr17	42398052	rs2011951	A	G	6134.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	42398757	rs2011895	C	A	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	42400816	rs60776742	C	A	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	42454566	rs376710190	CT	C	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-1.074;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:90,35:0.28:125
chr17	42475983	rs936019	G	C	4029.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	42483233	rs2045088	T	A	2403.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.929;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	42483531	rs1377808	T	A	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	42501692	rs1869495	C	A	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	42734746	.	CTT	C	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.013;ClippingRankSum=-0.000;DP=41;ExcessHet=3.0103;FS=5.434;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.20;ReadPosRankSum=1.138;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr17	42751607	rs6416902	C	T	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	42800414	rs17682536	C	T	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	42824402	rs4793144	C	A	8972.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.724;ClippingRankSum=0.000;DB;DP=354;ExcessHet=3.0103;FS=6.384;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.35;ReadPosRankSum=-0.851;SOR=0.270;set=HC	GT:AD:AF:DP	1/1:2,352:0.99:354
chr17	42824648	rs9893320	T	C	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	42824731	rs9912745	G	A	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	42836665	.	TGCCCCC	T	1664.73	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	42846994	rs8070918	T	C	589.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	42847033	rs58726064	C	G	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	42850352	rs68017435	T	C	7937.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr17	42851634	rs62066014	G	A	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	42851729	rs35936481	C	T	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	42852604	rs1558083	G	T	15141.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.53;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	42852610	rs1558084	T	C	15357.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.01;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	42853427	rs4792955	A	G	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.74;SOR=1.323;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	42853694	rs4793151	C	T	7005.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	42854208	rs1558085	G	A	10170.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr17	42854502	rs1558086	G	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	42854610	rs8075210	T	C	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	42855248	rs2070603	T	C	7634.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr17	42855472	rs2070604	T	C	8374.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	42855554	rs2070605	T	C	4375.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	42857430	rs35504352	G	A	17820.77	.	AC=2;AF=1.00;AN=2;DB;DP=678;set=Intersection	GT:AD:AF:DP	1/1:0,678:1.00:678
chr17	42857517	rs16970986	C	T	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr17	42932474	rs16971033	A	G	3726.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	42985199	.	A	G	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=-1.036;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:65,13:0.17:78
chr17	42992714	rs2229011	C	T	2942.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.899;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	43101696	.	TGTGTGTGTGTGG	T	1166.73	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=66.35;QD=34.32;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	43111162	rs9303432	A	G	2378.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	43111688	rs9900173	G	A	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	43131480	rs4793172	A	T	12890.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr17	43163756	rs6416904	A	G	2091.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	43170907	rs2239921	C	T	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	43175906	rs2239922	C	T	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	43181287	rs4793167	A	G	5605.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	43182810	rs2239924	T	G	1258.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	43183028	rs1053733	G	A	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	43190846	rs734921	G	A	4095.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	43191006	rs2285427	T	C	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	43192549	rs35911033	T	TC	8596.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	43197593	rs2129732	G	A	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	43197675	rs7226273	T	C	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	43198166	rs11382448	A	AG	2729.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:2,101:0.98:103
chr17	43213772	rs2306828	A	C	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	43216472	rs16939879	A	G	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	43226472	rs111687345	C	CTT	2134.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.56;QD=44.47;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	43226478	rs7216041	C	T	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.47;QD=42.47;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	43227766	rs78243847	T	TTTGG	861.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	43316520	rs1023995	T	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	43318778	rs7218169	GC	CG	4893.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	43319770	rs1801353	C	T	6925.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr17	43333125	rs11651968	C	T	6810.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	43333785	rs76453679	AAGAC	A	3799.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	43334649	rs60163605	C	A	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=1.047;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	43334653	rs58314091	T	C	2400.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=1.077;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	43342141	rs1047833	G	C	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	43342306	rs2285674	C	A	509.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	43344073	rs2074293	G	A	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	43351127	rs2072090	G	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	43364293	rs56405343	C	CG	11565.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr17	44788253	rs78850923	G	A	205.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	44788310	rs183211	G	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	44828931	rs199533	G	A	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	44833088	rs71138549	AT	A	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.478;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.384;QD=2.24;ReadPosRankSum=0.764;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:42,23:0.35:65
chr17	45000547	rs183199	G	C	3595.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	45012248	rs169126	T	G	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	45015835	rs7221042	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	45017859	rs758392	A	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	45050533	rs11079746	T	C	3499.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	45214604	rs75661039	AT	TC	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.397;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.303;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-8.904;QD=2.58;ReadPosRankSum=-1.395;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:70,11:0.14:81
chr17	45219354	rs7220394	A	G	1493.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	45234406	rs112848754	CA	C	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.237;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=57.76;MQRankSum=-6.135;QD=5.97;ReadPosRankSum=1.421;SOR=0.207;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr17	45234417	rs193061947	A	G	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.755;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=3.533;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-5.310;QD=4.58;ReadPosRankSum=0.719;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr17	45234420	rs78493795	T	G	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.409;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.602;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-5.310;QD=4.72;ReadPosRankSum=0.500;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr17	45234760	rs11372544	C	CA	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.44;ReadPosRankSum=-0.816;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:12,46:0.79:58
chr17	45291103	rs11327482	TG	T	3614.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	45331502	rs115526188	C	A	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	45360730	rs5918	T	C	10502.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	45364722	rs2292865	C	T	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	45367244	rs17218711	G	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	45368337	rs15908	A	C	4489.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	45369777	rs4642	A	G	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	45369789	rs4634	G	A	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr17	45600306	rs201678252	AT	A	6258.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	45623439	.	T	TGTGAGAGA,TGAGAGA	903.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=105;set=Intersection	GT:AF:DP	0/1:0.51:61
chr17	45637109	.	C	CTCTTG	1839.73	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	45663680	.	G	GTA	1581.73	.	AC=1;AF=0.500;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	0/1:38,59:0.61:97
chr17	45668339	.	T	G	710	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=6;HapScore=2;MGOF=2;MMLQ=30;MQ=42.23;NF=0;NR=33;PP=710;QD=22.5688246226;SC=ACTTTGAAAATAAGAGAAAAT;SbPval=1.0;Source=Platypus;TC=83;TCF=7;TCR=76;TR=33;WE=45668347;WS=45668329;set=Platypus	GT:AD:AF:DP	1/0:50,33:0.40:83
chr17	45669359	rs200616431	T	G	2135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840;ClippingRankSum=0.000;DB;DP=619;ExcessHet=3.0103;FS=2.048;MLEAC=1;MLEAF=0.500;MQ=54.96;MQRankSum=-1.949;QD=3.45;ReadPosRankSum=1.316;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:463,156:0.25:619
chr17	45669428	rs59875832	T	TA,TAAA	3633.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=222;set=Intersection	GT:AF:DP	1/2:0.76,0.23:161
chr17	45669444	rs111230318	A	G	122.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.450;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=30.600;MLEAC=1;MLEAF=0.500;MQ=55.50;MQRankSum=-6.907;QD=0.82;ReadPosRankSum=-5.761;SOR=4.880;set=HC	GT:AD:AF:DP	0/1:130,19:0.13:149
chr17	45669524	rs3865314	A	C	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr17	45677192	rs34538095	CT	C	553.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:8,33:0.80:41
chr17	45690029	rs35841962	CT	C	148.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.710;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.602;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=0.614;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:4,16:0.80:20
chr17	45695832	rs3760370	C	T	6098.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	45695914	rs3760371	T	C	3505.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	45700384	rs3065062	C	CCTA	1490.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	45734209	rs68149542	CTTT	C	3653.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	45750596	rs3809868	G	A	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	45754569	rs11301979	AC	A	1734.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	45757598	rs7210738	G	A	2225.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	45811210	rs2074190	A	G	5526.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	45822092	rs11650354	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:2,58:0.97:60
chr17	45822801	rs180865090	C	T	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	45885687	rs9907142	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	45885756	rs9911983	C	T	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	45887951	rs2074189	G	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	45888254	rs77660208	C	A	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	45890898	rs55928544	A	G	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	45894735	rs9914156	A	G	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	45897531	rs1985407	C	A	13820.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr17	45904163	rs3809869	A	G	9171.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr17	45905850	rs4793671	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	45915788	rs7350974	T	C	7717.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.43;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	45992580	rs60876460	C	CA,CAA	936.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.310;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.89;MQRankSum=0.000;QD=12.66;ReadPosRankSum=-2.016;SOR=1.101;set=HC	GT:AD:AF:DP	1/2:15,35,24:0.47,0.32:74
chr17	45994044	rs2228253	C	T	16861.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr17	45994094	rs2228251	T	C	14179.77	.	AC=2;AF=1.00;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr17	45994154	rs2229358	G	A	13645.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,526:1.00:526
chr17	46002744	rs1130932	G	T	7530.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	46022889	rs2002136	C	T	3459.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.851;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	46048157	rs2525084	A	G	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.41;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	46048165	rs2597168	T	C	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.83;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	46048168	rs2255697	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.99;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	46048592	rs2905846	A	G	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	46048858	rs2525085	C	G	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	46052793	rs2597172	A	G	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr17	46054264	rs2525087	C	A	2793.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	46055106	rs2597173	C	T	3141.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	46055347	rs2875746	A	G	2180.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	46059071	rs2737	T	C	2422.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	46115072	rs199699704	C	CG	4203.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=1.313;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	46115084	rs201261614	T	TGG	4123.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	46115122	.	A	AG	1770.73	.	AC=2;AF=1.00;AN=2;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	46132212	rs373501023	T	TG	1088.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	46190819	rs8080662	G	A	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	46190928	rs12601675	T	C	372.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.34;ReadPosRankSum=2.185;SOR=1.091;set=HC	GT:AD:AF:DP	0/1:5,21:0.81:26
chr17	46190928	.	TG	CA	320	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=2;MGOF=15;MMLQ=22;MQ=58.83;NF=8;NR=11;PP=320;QD=19.6562039401;SC=TTTTTTTTGATGTAGGGTCTT;SbPval=0.66;Source=Platypus;TC=20;TCF=9;TCR=11;TR=19;WE=46190937;WS=46190918;set=Platypus	GT:AD:AF:DP	1/1:1,19:0.95:20
chr17	46190929	rs12602948	G	A	1051.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.95;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	46195939	rs11450766	C	CA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.394;QD=1.74;ReadPosRankSum=1.407;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:41,17:0.29:58
chr17	46198876	rs3744346	G	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	46214736	rs74885375	T	C	5467.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr17	46239985	rs208005	A	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	46607021	rs7226137	T	C	4767.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	46620288	rs1042815	G	A	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	46622335	rs111979968	A	AC	327.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	46629593	rs2229304	G	T	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	46632725	rs72332254	AGG	A	1216.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.875;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=14.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.56;ReadPosRankSum=1.732;SOR=6.803;set=HC	GT:AD:AF:DP	1/1:1,29:0.97:30
chr17	46632729	.	AGG	A	1220.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.09;SOR=6.804;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	46651061	rs2288277	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	46655364	rs201040786	G	A	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	46670520	rs7406798	T	C	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	46671172	.	T	TG	101.87	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.78;QD=20.37;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	46688256	rs7406910	T	C	8921.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	46691587	rs112987208	A	AGGCCCCCTGCCC	2178.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	46709835	rs718079	A	G	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	46799812	rs1054072	A	G	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	46879079	rs12947660	G	T	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	46881748	rs489005	T	C	5492.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	46926772	rs551605	A	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	46934001	rs72437948	GCATT	G	2155.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:1,51:0.98:52
chr17	46970836	rs684682	A	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	46972479	rs3080082	ATCTC	A	17883.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr17	46973139	rs35074390	TG	T	1974.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	46985756	rs71144541	AG	A	704.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	46993370	rs4378658	G	A	1211.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	46993620	.	G	GTTTTTTTT	379.74	.	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.40;QD=37.97;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	47000110	rs2088139	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	47000251	rs1058018	C	T	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	47010795	rs72523750	CAG	C	1686.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	47011897	rs57901004	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;QD=25.49;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	47011972	.	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.23;ReadPosRankSum=-1.047;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr17	47013382	rs140139274	G	GTTTGT	3105.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	47013717	rs3215074	AT	A	729.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	47014675	rs2132201	C	T	8249.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr17	47014754	rs2132200	T	C	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	47035869	rs4793605	T	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	47038391	rs6504587	T	C	1238.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	47039132	rs2291725	T	C	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	47044463	rs62078384	C	T	7764.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	47076449	.	A	AT	3205.73	.	AC=1;AF=0.500;AN=2;DP=301;set=Intersection	GT:AD:AF:DP	0/1:39,196:0.83:235
chr17	47076551	rs2411760	G	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	47117430	rs61751193	T	A	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	47237802	rs1523137	A	G	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	47238028	rs8071836	C	T	4065.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	47241604	rs8074457	T	C	6177.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	47297297	rs616338	T	C	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.26;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	47299789	rs55978930	A	G	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	47484228	rs2233667	G	C	4526.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:1,175:0.99:176
chr17	47486905	rs3033735	G	GT	274.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;QD=16.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr17	47579417	rs4794056	C	T	3836.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	47688881	rs140209761	T	TAGAG	1501.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	47699294	.	G	A	2082.77	.	AC=2;AF=1.00;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	47779288	rs34701118	C	CA,CAA	1172.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.122;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.85;MQRankSum=0.000;QD=8.69;ReadPosRankSum=-0.183;SOR=0.699;set=HC	GT:AD:AF:DP	1/2:40,53,42:0.39,0.31:135
chr17	47780065	rs73335243	C	T	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.32;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	47780707	rs375908491	TGC	T	1065.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:5,38:0.88:43
chr17	47785064	rs9908959	C	A	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	47801651	rs11079874	A	G	728.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	47888852	rs4462645	A	G	5772.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr17	47899209	rs148787453	G	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	47923640	rs11297059	AT	A	860.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.590;QD=10.25;ReadPosRankSum=-1.110;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,69:0.82:84
chr17	48068720	rs8081044	T	A	519.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	48070741	rs2303467	G	A	2715.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	48070878	rs2303466	C	T	18463.77	.	AC=2;AF=1.00;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr17	48072426	rs2278163	G	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	48148413	rs2301628	G	A	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	48151908	rs4793639	T	C	8047.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	48153905	.	T	TG	2822.73	.	AC=1;AF=0.500;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	0/1:17,115:0.87:132
chr17	48155771	rs16948648	C	T	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	48157827	.	GGTGTGTGT	G,GGT	1468.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;QD=40.80;SOR=2.179;set=HC	GT:AD:AF:DP	1/2:0,10,26:0.28,0.72:36
chr17	48165064	rs12951197	T	C	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	48172779	rs7221362	A	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	48184288	rs847694	G	A	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	48184377	rs847693	A	G	7462.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	48186131	rs3059824	T	TCTC	3348.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	48202135	rs71353620	G	GCA	141.74	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr17	48212647	rs11317638	GA	G	1216.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	48226445	rs112058541	G	GC	1392.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	48227384	.	G	GGC	6801.73	.	AC=2;AF=1.00;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	48227403	.	G	GGC	5849.73	.	AC=2;AF=1.00;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	48243504	rs9911548	C	T	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	48245180	rs2696297	C	T	3943.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	48248998	rs36107109	C	T	8663.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr17	48249450	rs2696293	C	G	6131.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	48252804	rs2696288	T	C	8639.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	48253277	.	A	G	3983.77	.	AC=2;AF=1.00;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	48258140	rs2586484	T	C	5192.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	48258284	.	GA	G	192.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.384;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=1.756;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=3.701;QD=1.37;ReadPosRankSum=0.430;SOR=0.518;set=HC	GT:AD:AF:DP	0/1:102,39:0.28:141
chr17	48258321	rs2586485	C	T	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	48263021	rs2249492	C	T	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:1,125:0.99:126
chr17	48264717	rs2696245	C	T	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	48265426	rs2586488	A	G	7050.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	48265495	rs1800215	T	C	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	48266669	rs2586489	G	C	9789.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr17	48268223	rs2734272	A	G	7440.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:1,291:1.00:292
chr17	48268626	rs2696246	A	G	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	48269302	rs2857396	G	A	9907.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr17	48269426	rs2586490	C	T	4230.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	48271433	rs1007086	A	G	4395.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.48;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	48272055	rs2253369	C	T	5974.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	48274291	rs2075555	T	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	48274309	rs2075554	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	48276004	rs5820805	G	GC	1807.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	48276971	rs2256835	G	C	4637.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	48277059	rs150854949	AGCCCCAGGCCCCAGGCCCCAG	A	5129.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	48356260	rs6504642	G	A	10061.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	48423418	rs9912067	G	C	570.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.78;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	48432042	rs11430429	G	GA	2201.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	48432749	rs73344091	G	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	48433081	rs886568	G	A	4224.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	48433958	rs4794136	T	C	15715.77	.	AC=2;AF=1.00;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	1/1:0,608:1.00:608
chr17	48440522	rs10656180	T	TCCA	13121.73	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	48445674	rs111380254	CCTGGTCAG	C	2806.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:2,107:0.98:109
chr17	48446130	rs17776853	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	48448023	rs16948951	C	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	48452776	rs3760413	A	C	5548.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	48452978	rs3060668	A	AAGC	12238.73	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr17	48457609	rs917028	C	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	48472270	rs3760407	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	48503473	rs371898261	GCGCCC	G	597.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.43;QD=39.85;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	48504132	rs9901133	A	G	2658.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	48539763	rs2277631	C	A	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	48539997	rs8082089	T	C	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	48540960	rs3744522	C	G	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	48541443	rs2277630	G	C	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	48541491	rs2277629	A	G	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	48541707	rs898455	G	A	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	48542572	rs898454	C	G	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	48543391	rs2231506	A	C	573.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	48545596	rs34864120	G	A	6176.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	48549791	rs2305998	C	G	3599.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	48557326	rs2290862	G	A	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	48557348	rs2290861	T	C	4938.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	48560550	.	A	AAAAG	460.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.74;MQRankSum=2.130;QD=25.56;ReadPosRankSum=-1.490;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:3,15:0.83:18
chr17	48595017	rs61749931	C	T	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	48595109	rs56994118	T	C	484.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	48595988	rs8064455	G	C	2397.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	48596287	rs76113260	G	A	11239.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	48597114	rs28498091	C	T	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	48598785	rs1380657	G	A	2588.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	48599195	rs9893172	T	C	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	48599450	rs7216625	A	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	48600952	rs17642181	T	G	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr17	48602098	.	T	TGTGTGTGTGTGTGTGAGAGA	1492.73	.	AC=2;AF=1.00;AN=2;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=65.30;QD=34.71;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:4,39:0.91:43
chr17	48602412	rs1106730	C	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	48603775	rs149225883	C	CTATTTATT	450.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	48605780	rs8067733	C	G	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	48606313	rs2290864	G	A	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	48606537	rs1133818	C	G	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	48606606	rs4793659	G	A	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	48607267	rs78009100	G	A	4710.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	48607280	rs6504671	G	C	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.42;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	48608717	rs1064055	T	C	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	48608951	rs2277627	C	T	152.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	48610272	rs755046	G	C	1096.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	48617493	rs62059698	A	G	2346.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	48625543	rs12943759	G	A	6159.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	48629375	rs151234453	G	T	3129.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	48629458	rs8065903	A	G	5784.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	48646346	.	A	AGTGTGTGTGT,AGTGTGTGT	489	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.15;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=16;MMLQ=17;MQ=62.2;NF=9,9;NR=36,36;PP=489,171;QD=10.9333333333;SC=CCTGCAGGTGAGTGTGTGTGT;SbPval=0.31;Source=Platypus;TC=75;TCF=12;TCR=63;TR=45,45;WE=48646354;WS=48646336;set=Platypus	GT:AF:DP	0/1:0.60:75
chr17	48646376	rs58450142	T	TGTGTGTGTTG,TGTGTGTGTGTTG	1294.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.842;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.150;MLEAC=1,1;MLEAF=0.500,0.500;MQ=63.51;MQRankSum=0.755;QD=29.43;ReadPosRankSum=0.207;SOR=2.049;set=HC	GT:AD:AF:DP	1/2:7,12,25:0.27,0.57:44
chr17	48647011	rs12946808	T	G	6963.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr17	48652875	rs198550	A	G	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	48653354	rs12449998	C	A	25170.77	.	AC=2;AF=1.00;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	1/1:0,927:1.00:927
chr17	48668013	rs8064333	G	C	8762.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	48668021	rs34926473	AT	A	8593.73	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr17	48668091	rs8066026	A	C	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	48668653	rs7359536	A	G	469.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	48668720	rs7359527	C	A	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	48669026	rs11079918	T	C	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	48678325	rs198530	A	T	6408.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	48687430	rs11658835	C	T	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	48692881	rs8066527	C	T	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	48693760	rs4794171	G	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	48698906	rs4794172	C	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	48703752	rs739925	T	C	9623.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr17	48712705	rs12604031	G	A	5104.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.169;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	48712711	rs9890046	C	G	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=1.208;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	48735774	rs739923	G	A	12838.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr17	48746135	rs879459	C	T	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.32;SOR=0.967;set=HC	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	48746923	rs4794176	G	C	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	48750231	.	G	GA	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-0.096;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:31,17:0.35:48
chr17	48752600	rs4148415	C	T	1434.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	48752866	rs2072365	C	T	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	48752890	rs2072366	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	48777806	.	GAA	G	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=2.469;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:25,9:0.26:34
chr17	48797210	rs11398903	T	TG	5004.73	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	48834053	.	CAAAAAAAAA	C	821.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=41.09;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	48834080	rs9303561	A	G	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.88;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	48917333	rs9675120	C	T	17076.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:1,629:1.00:630
chr17	48940422	rs4626	T	C	4228.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	49041948	.	C	CAA	213.74	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=21.37;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	49048274	.	G	GT	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=0.214;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr17	49054439	rs9332407	T	C	3177.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	49067763	rs9899816	T	C	1835.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	49076857	.	T	TA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.18;ReadPosRankSum=-0.769;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:28,16:0.36:44
chr17	49084471	.	GGT	G	57	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=1;NR=1;PP=57;QD=30.0;SC=CCAACATTAGGGTGTGTGTGT;SbPval=0.59;Source=Platypus;TC=11;TCF=7;TCR=4;TR=2;WE=49084480;WS=49084461;set=Platypus	GT:AD:AF:DP	1/0:9,2:0.18:11
chr17	49124845	rs11400140	G	GA	299.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	49197654	rs5820842	A	AC	1394.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;QD=31.70;SOR=2.885;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	49247503	.	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.877;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.002;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=-0.495;SOR=1.434;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chr17	49281133	rs17574235	G	A	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	49350546	rs35339641	AT	A	40.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.135;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.10;ReadPosRankSum=0.921;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr17	49350802	rs2318789	A	C	3069.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	49371230	rs12940196	G	C	574.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	49371505	rs917654	C	G	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	49711045	rs2286634	A	G	731.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	49713428	rs139939914	GACAT	G	753.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	50149899	rs5820905	C	CT	466.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=19.45;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	51063941	rs2271474	C	G	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr17	51900836	rs59657238	C	T	10409.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	51901084	rs3803825	A	G	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	51901643	rs4561518	C	T	1929.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	51901703	rs4561519	C	G	1799.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	51902252	rs3826355	C	T	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	51902492	rs10693171	A	AAAT	1290.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	52989920	rs72829469	G	A	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	52993346	rs2934935	G	A	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	53007655	rs12939352	T	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	53014232	rs5821077	A	ATTAAG	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	53038082	rs2287136	G	A	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	53038430	rs4793784	A	G	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	53038783	rs1057980	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	53042017	rs55801837	C	G	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	53042023	rs56131849	TA	T	1345.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	53063743	rs958556	C	T	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	53076799	rs1156287	G	A	3845.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	53076986	rs11658717	G	A	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	53120855	rs1894936	A	G	878.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	53124546	rs71361750	C	CGT	168.50	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chr17	53155666	rs1026961	C	T	119.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	53158361	rs2628302	G	A	941.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	53342796	rs10635027	G	GTTTC	11638.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	53392852	rs2287223	G	A	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	53478675	rs3744308	A	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	53828706	rs890488	C	G	1744.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	53844833	rs57156382	CT	C	2336.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:5,120:0.96:125
chr17	53844847	rs35430620	C	T	3331.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:2,124:0.98:126
chr17	53851071	rs2960063	A	G	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.24;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	53851078	rs2912558	T	C	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.70;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	53851228	rs2960062	C	T	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.03;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	53852111	rs2960061	T	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	54450038	rs957724	C	A	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	54450134	rs8069322	G	A	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	54517855	rs7224536	T	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	54526301	rs2024316	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	54534634	rs10852985	G	A	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	54558280	rs112417906	GTGTA	G	33.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.257;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.973;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=-0.844;QD=1.35;ReadPosRankSum=-0.314;SOR=0.145;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr17	54558282	rs68128704	GTA	G	386.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr17	54978794	rs205498	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	54981571	.	CA	C	516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.408;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.958;QD=2.92;ReadPosRankSum=-0.630;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:104,73:0.41:177
chr17	55026912	rs12942251	A	G	3534.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	55027850	rs8071691	T	C	5874.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	55038062	rs9899845	T	C	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	55055741	rs71139945	CT	C	359.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:1,23:0.96:24
chr17	55058689	rs3095499	G	C	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	55065530	rs12453004	A	G	1186.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	55065558	rs11437466	T	TA	1976.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	55074482	.	T	TA	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.220;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:81,23:0.22:104
chr17	55187278	rs11079277	G	A	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	55189723	rs3094444	T	G	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	55197802	rs4583	C	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	55363421	rs11079286	G	C	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	55704465	rs1861474	A	G	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	55822171	rs12451748	T	C	2039.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	55822214	rs12451753	T	A	3234.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	55822467	rs12449409	G	A	5000.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	55946562	rs79637497	G	T	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	55950300	rs2304943	T	C	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	56083934	rs2233911	G	A	3601.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	56235104	rs3863503	C	A	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	56235322	rs1987665	G	A	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	56321451	rs67390833	GACACAC	GAC,G	2252.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=153;set=Intersection	GT:AF:DP	1/1:1.00:53
chr17	56351708	rs72051182	AGT	A	102.87	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	56386289	rs145131712	C	T	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr17	56423750	rs11658873	G	C	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	56435885	rs2526374	G	T	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr17	56492800	rs3744093	T	C	11089.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr17	56540110	rs3803753	G	A	4690.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	56540267	rs3803752	C	T	7880.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	56544280	rs1017089	T	G	5774.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.398;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.129;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.01;ReadPosRankSum=-1.197;SOR=0.325;set=HC	GT:AD:AF:DP	1/1:1,221:1.00:222
chr17	56569842	rs75741842	T	TGA	12028.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	56580997	rs1860262	T	C	1407.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:2,55:0.96:57
chr17	56581651	rs4277402	C	G	3770.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	56586242	rs36056793	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	56598655	rs1057065	C	T	8675.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	56620167	rs17822735	C	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr17	56620501	rs17222523	A	G	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	56621286	rs8071623	G	T	5443.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	56621359	rs6503867	T	C	5939.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	56636854	rs7225128	T	C	4542.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	56643109	rs34818467	A	G	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	56649614	rs144725723	AAAACAAAC	A	716.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	56654850	rs7215900	A	T	92.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.32;ReadPosRankSum=0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr17	56659018	rs6503870	C	T	1475.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	56670761	rs35867543	A	T	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	56691034	rs66508449	T	C	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	56693799	rs11454189	C	CT	312.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=-1.045;SOR=0.317;set=HC	GT:AD:AF:DP	1/1:5,20:0.80:25
chr17	56737838	rs17822837	G	A	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	56769979	rs12946397	C	T	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	56833457	rs201186780	G	GGAACCC	24925.73	.	AC=2;AF=1.00;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	1/1:0,564:1.00:564
chr17	57050365	rs16943326	C	T	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	57050425	.	C	T	725.77	.	AC=2;AF=1.00;AN=2;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	57089576	.	C	CCAGCAGCAGCAGCAG,CCAGCAGCAGCAGCAGCAG	1312	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.55;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=19;MMLQ=26;MQ=58.69;NF=31,31;NR=74,74;PP=823,1312;QD=8.00952380952;SC=ATCACTACCACCAGCAGCAGC;SbPval=0.55;Source=Platypus;TC=113;TCF=34;TCR=79;TR=105,105;WE=57089584;WS=57089566;set=Platypus	GT:AF:DP	0/1:0.93:113
chr17	57089588	rs72443487	G	GCAGCAGCAGCAGCAGCAC,GCAGCAGCAGCAGCAC	4526.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=335;set=Intersection	GT:AF:DP	0/1:0.84:254
chr17	57094617	rs4932691	T	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	57126842	rs62084384	G	A	266.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	57148099	rs200622963	T	TA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;ClippingRankSum=-0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.57;ReadPosRankSum=-0.112;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr17	57152920	rs6416933	A	G	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.61;QD=23.47;SOR=4.332;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	57158552	rs61758100	G	A	3206.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.845;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	57247249	rs9914425	T	A	10118.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr17	57272079	rs2291193	G	A	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	57287454	rs6503905	A	G	2800.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	57290383	rs3744383	G	A	5476.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	57334668	rs12450435	C	G	4770.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	57344601	rs62083295	C	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	57663596	rs58298344	TA	T	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.868;MLEAC=1;MLEAF=0.500;MQ=59.19;MQRankSum=-1.903;QD=3.31;ReadPosRankSum=-1.390;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:62,47:0.43:109
chr17	57717737	rs9910530	C	G	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.30;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	57719365	.	T	TG	67.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=8.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.273;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:108,32:0.23:140
chr17	57719366	rs9899439	T	G	724.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=19.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.568;SOR=1.359;set=HC	GT:AD:AF:DP	0/1:69,74:0.52:143
chr17	57721907	.	T	TTTGG	2076.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.017;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=5.482;MLEAC=2;MLEAF=1.000;MQ=63.87;MQRankSum=0.849;QD=37.76;ReadPosRankSum=0.884;SOR=1.947;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr17	57725043	rs8071749	T	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	57733479	rs4349212	T	A	1780.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	57743691	rs9893154	G	A	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	57750982	rs8065248	T	C	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	57889192	rs2063353	T	G	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	57937792	.	G	GA	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=9.451;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.020;SOR=1.401;set=HC	GT:AD:AF:DP	0/1:84,22:0.21:106
chr17	58018414	rs34535973	CT	C	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.859;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chr17	58040730	rs4968401	T	C	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	58066607	rs200816848	AT	A	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-3.306;QD=3.04;ReadPosRankSum=1.379;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:108,65:0.38:173
chr17	58127027	rs140995712	C	T	917.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:53,47:0.47:100
chr17	58149745	rs3744375	G	A	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	58180062	rs8075626	T	C	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	58180079	rs8074512	C	G	3187.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:2,80:0.98:82
chr17	58180172	rs8075789	T	C	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	58289507	rs187303521	T	C	180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=4.123;MLEAC=1;MLEAF=0.500;MQ=57.35;MQRankSum=-10.991;QD=1.29;ReadPosRankSum=3.716;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:114,26:0.19:140
chr17	58289532	.	T	TA	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=5.919;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-9.298;QD=3.11;ReadPosRankSum=-1.720;SOR=0.304;set=HC	GT:AD:AF:DP	0/1:73,26:0.26:99
chr17	58303313	.	CAA	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.775;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.958;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:13,6:0.32:19
chr17	58504201	rs11655643	C	T	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	58786625	rs2643103	A	G	6622.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=26.07;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	58786758	.	C	CT	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708;ClippingRankSum=0.000;DP=123;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.028;QD=0.59;ReadPosRankSum=0.849;SOR=0.483;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr17	58824567	rs7501675	T	C	3766.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	59001886	rs118084185	T	A	687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.46;ReadPosRankSum=1.026;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:15,45:0.75:60
chr17	59024610	.	G	A	8469.77	.	AC=2;AF=1.00;AN=2;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr17	59067526	rs36055285	G	A	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	59480289	rs200207014	GAT	G	4470.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.41;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	59480291	.	T	G	1441	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=2;HapScore=1;MGOF=202;MMLQ=23;MQ=59.71;NF=58;NR=15;PP=1441;QD=20.2160440075;SC=GAAGAACCGATAGAGAGAGAG;SbPval=0.47;Source=Platypus;TC=76;TCF=61;TCR=15;TR=73;WE=59480299;WS=59480281;set=Platypus	GT:AD:AF:DP	1/1:3,73:0.96:76
chr17	59480311	rs202026270	GAGAGAGAGAGAGAGAGAGAGA	G	218.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.773;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=1.114;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:81,16:0.16:97
chr17	59480313	rs140392356	GAGAGAGAGAGAGAGAGAGA	G	2389.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.286;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.64;ReadPosRankSum=-0.984;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:16,81:0.84:97
chr17	59482165	rs66504335	GC	G	5376.73	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	59482169	rs35619711	C	G	3277.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.063;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.50;ReadPosRankSum=0.118;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:2,113:0.98:115
chr17	59482173	rs9891115	G	A	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.28;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	59485393	rs2240736	C	T	11920.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr17	59485528	rs140411884	C	A	19529.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,709:1.00:709
chr17	59485555	rs1057987	C	T	20066.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:0,734:1.00:734
chr17	59485758	rs61751978	C	T	6099.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	59489893	rs9907379	T	C	9802.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr17	59533787	rs188957952	G	A	2206.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.59;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	59544863	rs758596	G	A	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	59557433	rs3744439	T	C	14166.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr17	59560974	.	A	AGTGT	349.74	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.40;QD=38.86;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	59857809	rs4988351	C	G	974.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	59955426	rs606072	T	G	5537.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	60043884	rs671347	G	A	8532.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.821;set=HC	GT:AD:AF:DP	1/1:0,330:1.00:330
chr17	60070111	rs11375626	G	GT	255.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	60070140	rs11375627	C	CT	174.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	60142662	.	CG	C	134.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.522;ClippingRankSum=0.000;DP=111;ExcessHet=3.0103;FS=15.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.841;SOR=0.056;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr17	60142710	.	G	GC	474.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	60215748	rs11079465	T	C	242.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	60217236	rs56068498	A	G	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	60324448	rs12325728	C	T	2895.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:2,110:0.98:112
chr17	60324593	rs11079467	C	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	60360238	rs10163525	A	G	10444.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	60360261	rs62069132	T	C	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr17	60361537	rs201143536	C	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr17	60363906	rs202158824	G	T	701.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.77;QD=33.42;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	60363941	rs148555715	G	C	1324.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.77;QD=32.31;SOR=7.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	60364233	rs4968513	A	T	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	60365992	rs149569922	C	G	1443.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=32.08;SOR=4.271;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	60366741	rs2668983	C	G	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	60366787	rs200284807	CT	C	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:9,43:0.83:52
chr17	60366800	rs11658000	T	A	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	60368373	rs201390339	TA	T	57	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.68;QD=14.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	60369418	rs201099247	G	A	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=20.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	60464688	rs9909704	C	T	2301.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr17	60472623	rs11079476	C	T	2141.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	60491298	rs9913294	G	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	60503892	rs2543409	A	G	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	60503921	rs2319055	T	C	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.36;QD=30.56;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	60512662	.	A	G	997	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=46.9;NF=3;NR=49;PP=997;QD=19.8417540874;SC=AGGTGAGTACAATGGGAAATT;SbPval=1.0;Source=Platypus;TC=184;TCF=51;TCR=133;TR=52;WE=60512670;WS=60512652;set=Platypus	GT:AD:AF:DP	0/1:132,52:0.28:184
chr17	60597986	rs2430926	C	T	223.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	60598037	.	TA	T	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.35;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=1.807;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr17	60753904	rs4968617	A	C	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	60758273	rs2245463	G	C	9280.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr17	60759340	rs2429389	A	G	6402.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.46;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	60759347	rs2460300	A	G	6384.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	60766224	rs2465430	A	G	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	60766483	rs2465429	A	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	60767015	rs2429387	G	A	9530.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr17	60767151	rs740698	C	T	14073.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr17	60767461	rs2465426	C	G	3622.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	60767953	rs11357719	GC	G	6647.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr17	60768243	rs2465425	A	G	5186.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	60778932	rs2251393	G	A	1099.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	60779025	rs2251391	A	G	2680.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	60824224	rs17746153	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	61087073	rs16946713	A	G	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	61315272	rs2460111	G	A	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	61432774	rs4968765	A	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	61457217	rs8065950	G	C	7566.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	61473325	rs2270133	C	A	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	61489968	rs34592714	CT	C	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.986;SOR=0.786;set=HC	GT:AD:AF:DP	0/1:130,33:0.20:163
chr17	61556527	rs4296	A	G	3095.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	61564522	rs4333	T	C	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	61571210	rs12709437	C	T	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	61571516	rs150234417	AGT	A	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.273;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,6:0.15:40
chr17	61600717	rs71376915	A	G	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	61600908	rs191467632	G	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	61607708	rs7221517	T	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	61611423	rs7225568	T	C	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	61615371	rs4465659	T	G	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:1,181:0.99:182
chr17	61615660	rs148485289	T	TG	2925.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:2,104:0.98:106
chr17	61621805	rs8070334	T	G	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr17	61622703	rs12603614	A	G	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	61660889	rs66502552	CG	C	8019.73	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	61768667	rs143517584	G	A	6804.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	61888693	rs2584629	T	A	385.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	61901791	.	AC	A	8329.73	.	AC=2;AF=1.00;AN=2;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr17	61908055	rs55833669	CT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-0.494;SOR=1.175;set=HC	GT:AD:AF:DP	0/1:48,14:0.23:62
chr17	61972742	rs61764000	T	G	7568.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.18;QD=44.26;SOR=1.152;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	61972750	rs61763999	A	C	8170.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	61986027	rs2854152	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	61987570	rs2727307	G	T	11040.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=44.52;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	61987576	rs2246207	G	A	11185.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.67;QD=43.87;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	61988014	rs2006208	G	A	7981.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	61995030	rs2665802	A	T	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	61996174	rs6172	T	G	8161.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.87;QD=45.34;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	61996183	rs9282699	T	C	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.10;QD=43.27;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	61996204	rs6171	T	C	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	61996255	rs2005172	A	C	6496.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	61996273	rs11568828	T	C	4926.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	62006497	rs1051684	A	G	1165.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	62007498	rs2070776	A	G	11173.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	62018773	rs2070720	T	C	11254.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr17	62020348	rs2058194	T	C	9068.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	62020563	.	CAGAGATGACAGAGAG	C,CAG	2456.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=104;set=Intersection	GT:AF:DP	1/2:0.18,0.82:62
chr17	62021374	rs11869827	C	T	580.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	62022659	rs58028318	A	AG	2312.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	62041068	rs6504191	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	62041317	rs2331408	G	T	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	62042078	rs2877373	T	C	290.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	62045293	rs11418006	C	CA	344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.234;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.231;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.927;QD=5.39;ReadPosRankSum=-1.306;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:30,34:0.53:64
chr17	62048467	rs2302236	A	G	3767.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:2,148:0.99:150
chr17	62049235	rs9892013	A	G	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	62075994	rs76735942	G	GA	5354.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	62079286	rs12939821	G	A	6708.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	62080969	rs4141180	A	C	5531.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	62083929	rs6504194	A	G	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	62121480	rs196912	T	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	62122145	rs196915	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	62122677	rs196917	G	A	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	62123022	rs196918	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	62125272	rs196923	A	G	3427.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr17	62130389	rs10689374	G	GCCT	713.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	62130937	rs196929	T	C	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	62132309	rs196931	C	T	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	62141455	rs187826	A	G	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.856;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	62145672	rs196939	A	G	2189.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	62145728	rs196940	A	G	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	62152611	rs3044067	T	TAA	765.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.056;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=2.370;MLEAC=2;MLEAF=1.000;MQ=61.90;MQRankSum=1.054;QD=20.15;ReadPosRankSum=-0.722;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:3,35:0.92:38
chr17	62156933	rs196947	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	62158012	rs196950	T	C	2810.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	62158278	rs196951	T	C	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	62158300	rs196952	C	T	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	62158319	rs196953	T	C	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	62226325	rs370493262	C	T	1106.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	62232046	rs10546895	AACAG	A	2856.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	62248386	rs12941171	C	G	1477.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	62254983	rs1967130	G	A	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	62265838	rs36104018	TC	T	4306.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	62270785	rs2166290	T	C	1772.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	62270823	rs139320354	G	GCTTCCTTC	4369.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=44.59;SOR=1.364;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	62385606	rs12952899	C	A	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.36;QD=26.86;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	62385609	.	A	AAAAC	2520.73	.	AC=2;AF=1.00;AN=2;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.35;QD=46.68;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	62385918	rs112933893	C	A	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	62386078	rs28670385	T	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	62463825	rs199721035	T	TG	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	62502435	rs1991401	A	G	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	62602762	.	T	TA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.88;ReadPosRankSum=0.589;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:28,8:0.22:36
chr17	62754586	rs9908143	T	C	5861.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr17	62758984	rs11374577	G	GC	752.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	62782689	rs6504255	T	C	2358.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	62796527	.	C	T	1954.77	.	AC=1;AF=0.500;AN=2;DP=314;set=Intersection	GT:AD:AF:DP	0/1:205,109:0.35:314
chr17	62855003	.	T	TA	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=10.258;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.91;ReadPosRankSum=-1.946;SOR=0.872;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chr17	62924044	rs6504263	G	A	967.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	62952689	rs3960389	C	G	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.69;QD=26.84;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	63052344	rs12945514	G	T	1521.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	63052361	rs7216195	C	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	63133804	rs2585858	A	G	2631.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	63533423	rs7219582	C	A	1375.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	63533789	rs9915936	T	C	2705.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	63534036	rs76682777	AC	A	2871.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	63534221	rs56248738	C	T	897.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	63534250	rs8078753	T	C	1139.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	63534478	rs35399989	G	A	2502.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr17	63633073	rs2107654	T	C	786.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	63685174	rs11079582	C	T	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=25.84;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	63739352	rs12948946	A	G	1774.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	64023624	rs17704679	T	C	1103.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	64023781	rs11079629	C	T	137.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	64024255	rs56239919	A	T	366.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	64024303	rs4277386	G	A	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	64024340	rs9901053	T	C	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	64024375	rs9899985	G	A	2154.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr17	64025093	rs11651820	G	A	51.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr17	64025331	rs11652766	A	G	838.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.67;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	64025926	rs9908964	G	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	64049733	rs1401049	A	G	3161.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	64050062	rs1401048	G	A	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	64062830	rs908713	T	A	1967.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.96;SOR=0.898;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	64173170	rs2159557	A	G	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	64208230	rs6933	G	A	3962.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	64208396	rs1558359	G	A	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	64210528	rs1544556	G	A	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	64213104	rs2041398	A	G	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	64216644	rs3744317	G	A	4214.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	64728707	rs9912154	C	T	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	64735035	rs5821506	C	CT	3516.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	64735157	rs9892696	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	64737717	rs3803821	T	A	4227.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	64783081	rs6504459	G	A	7485.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	64785191	rs11420909	T	TG	1711.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	64875035	rs2286676	C	T	1915.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	64881075	rs2286678	A	G	12757.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr17	64961276	.	CCA	C	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.480;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=2.409;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-2.161;QD=2.14;ReadPosRankSum=-4.991;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr17	65026515	rs2240648	A	G	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	65027740	rs740555	G	C	7014.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr17	65051104	rs11322532	CA	C	2256.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	65051180	rs2363844	A	G	4043.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	65074354	rs35467630	G	GA	955.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	65104666	rs11657929	T	G	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	65104743	rs11653020	G	A	4832.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.074;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.84;ReadPosRankSum=-0.766;SOR=0.313;set=HC	GT:AD:AF:DP	1/1:1,186:0.99:187
chr17	65116491	rs12709454	T	C	2330.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	65119931	rs148790310	C	CTGTGTG	718.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=39.93;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	65142070	rs34812114	G	GA	1545.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:4,74:0.95:78
chr17	65145874	rs3213754	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	65156919	rs1035176	G	C	1429.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	65157277	rs2287127	A	T	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	65211876	rs10512514	A	C	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	65528801	rs2304278	C	T	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	65548540	rs2916133	G	T	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	65549847	rs2570046	A	G	404.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	65574283	rs2570035	A	G	5995.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr17	65574437	rs8082003	A	G	3008.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	65665608	rs36013607	AT	A	311.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr17	65714232	rs3760224	C	G	8254.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	65714359	rs3760226	G	A	1622.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	65718839	rs999043	C	T	201.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	65722849	rs3744268	G	A	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	65730259	rs80229149	T	C	266.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	65730404	rs4790943	G	A	2391.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	65732093	rs3760227	A	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	65732959	rs7223990	A	G	354.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	65734514	rs1542610	A	G	3261.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	65736725	rs11439892	C	CA	166.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.137;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.12;ReadPosRankSum=0.875;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,13:0.87:15
chr17	65736913	rs61602831	T	C	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	65737016	rs34886243	CT	C	318.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,20:0.95:21
chr17	65739789	rs2286917	A	G	3739.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.00;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	65739797	rs2286918	A	T	3733.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.93;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	65821481	rs12945266	C	T	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	65850029	rs74842951	G	A	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	65882457	rs8072824	T	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	65955651	rs8068790	T	C	3179.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	65962538	rs5821446	A	AT	1605.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	65972188	rs61489754	TA	T	375.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.78;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	65988049	rs9891146	T	C	4337.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	65989048	rs28368756	T	C	4661.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	66036943	rs141699894	T	TG	1648.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.28;SOR=1.785;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	66038181	rs62084696	C	G	3863.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	66039350	rs4638	A	G	4858.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr17	66039618	rs35594666	G	A	586.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	66122027	rs374673808	TA	T	1297.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.92;ReadPosRankSum=1.211;SOR=0.767;set=HC	GT:AD:AF:DP	1/1:8,79:0.91:87
chr17	66267752	rs62087130	G	A	2561.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.18;QD=25.88;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	66364749	rs1558877	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	66364804	rs1558878	T	C	6551.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	66366739	rs3744301	C	T	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	66420766	rs3785605	T	C	2044.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	66422383	.	T	TG	111.87	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	66422389	.	GC	G	111.87	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.37;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	66425995	rs3785610	T	G	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=1.900;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	66425995	.	TCC	GCT	718	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=4;MMLQ=28;MQ=60.0;NF=27;NR=8;PP=718;QD=22.0419392818;SC=CTCCCAAGGTTCCGGGATTAC;SbPval=0.59;Source=Platypus;TC=38;TCF=29;TCR=9;TR=35;WE=66426005;WS=66425985;set=Platypus	GT:AD:AF:DP	1/1:3,35:0.92:38
chr17	66425997	rs3785611	C	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	66430923	rs10445211	A	G	1007.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	66447073	rs2302783	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	66449122	rs883541	G	A	3201.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	66453305	rs71378928	C	G	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	66453344	rs76441646	C	T	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	66453657	.	GCCCCGCCCCTACCCCGCCCCGTCCCCA	G	1391	.	AC=2;AF=1.00;AN=2;BRF=0.17;FR=1.0000;HP=4;HapScore=1;MGOF=5;MMLQ=22;MQ=56.75;NF=0;NR=3;PP=1391;QD=470.666666667;SC=CGCCGGTCCTGCCCCGCCCCT;SbPval=1.0;Source=Platypus;TC=15;TCF=0;TCR=15;TR=3;WE=66453691;WS=66453647;set=Platypus	GT:AD:AF:DP	1/1:12,3:0.20:15
chr17	66518780	rs17550507	TA	T	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	66519857	rs35723852	C	CT	1021.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	66524987	rs2302230	G	A	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.955;set=HC	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	66526027	rs2302231	G	T	3392.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.300;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=3.074;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.06;ReadPosRankSum=-0.704;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:1,140:0.99:141
chr17	66526316	rs2302233	A	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	66533655	rs2907373	A	G	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr17	66536212	rs3214285	CAG	C	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	66536219	rs2286558	G	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	66899501	rs75339580	G	A	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	66933003	rs4147967	C	T	976.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	66985397	.	TCA	T	84	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=2;MGOF=9;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=84;QD=29.0;SC=TCTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=12;TCF=0;TCR=12;TR=3;WE=66985406;WS=66985387;set=Platypus	GT:AD:AF:DP	0/1:9,3:0.25:12
chr17	66986162	rs9902444	A	C	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	67028260	rs2302291	T	C	5229.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:2,198:0.99:200
chr17	67031369	rs1860448	T	C	3208.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.207;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	67031457	rs1860447	C	T	4823.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr17	67075072	rs2302290	G	A	97.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.26;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	67075294	rs2302289	C	T	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	67080770	rs11657954	A	G	1826.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	67080811	rs71144653	CT	C	211.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;MQ=61.13;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	67081130	rs62082718	T	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	67081732	rs2302133	C	T	1781.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	67081830	rs2302134	T	C	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	67092948	.	T	TA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.259;ClippingRankSum=0.000;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=0.237;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:74,18:0.20:92
chr17	67096801	.	A	AC	97	.	AC=2;AF=1.00;AN=2;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	67099129	rs2364315	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	67101718	rs7212506	C	T	417.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.21;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	67109662	rs11659091	G	A	423.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	67109894	rs9282552	C	T	1900.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	67119593	rs4603621	G	C	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	67125840	rs4968839	C	T	1547.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	67131029	rs58333377	C	CTTTTTTTTTTT	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.26;QD=42.81;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	67132022	rs7219200	T	C	1880.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	67145290	rs1014235	C	T	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	67150176	rs2886232	T	C	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	67152893	rs10605889	CAAAT	C	489.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	67160186	rs7208382	T	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	67170736	rs740520	A	G	862.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	67171748	rs12940557	A	G	522.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	67178316	rs4968849	A	G	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	67178954	rs4968851	C	T	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.04;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	67178976	rs60708995	GA	G	97.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-0.668;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chr17	67181540	rs11658738	C	A	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	67181548	rs11655199	T	G	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.42;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	67186446	rs17776227	T	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	67188576	rs8070232	A	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	67188668	rs8074259	T	C	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	67211058	rs9909045	T	A	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	67212031	rs11077414	A	G	7408.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	67212423	rs9909216	G	A	1542.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	67212574	rs9912127	A	C	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	67212595	rs11868981	G	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	67215712	rs12941264	C	T	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.69;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	67219703	rs11655507	G	A	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	67219768	rs1468512	C	T	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	67220060	rs1468513	T	G	275.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	67245941	rs1420904	G	A	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	67245944	rs1420905	C	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.98;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	67249922	rs9909726	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	67264251	rs145417915	AGATATATCTTAG	A	644.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	67267317	rs557491	T	C	4009.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	67279959	rs56193366	C	CAGTA	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	67280310	rs564426	A	C	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	67290840	rs17686569	T	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	67293535	rs487382	A	G	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	67304447	rs11544715	C	T	3781.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	67305364	rs11871086	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	67411382	rs11452280	C	CT	369.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	67501133	rs34498161	C	T	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	67502138	rs2074027	G	A	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	67519542	rs2251160	G	A	2423.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	67521241	rs2716206	C	A	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	67522903	rs3729922	C	T	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	67522919	rs2074030	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	69334502	rs5821838	C	CT	403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=-0.943;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr17	69334553	rs4401085	G	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	69334971	.	TATTTC	T	1692.73	.	AC=2;AF=1.00;AN=2;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.16;QD=37.62;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	69334972	.	A	C	1813	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=7;HapScore=1;MGOF=15;MMLQ=16;MQ=64.24;NF=17;NR=22;PP=1813;QD=47.3787490397;SC=TGTTTCTTTTATTTCCTTTCT;SbPval=0.61;Source=Platypus;TC=40;TCF=18;TCR=22;TR=39;WE=69335043;WS=69334962;set=Platypus	GT:AD:AF:DP	1/1:1,39:0.97:40
chr17	69334981	.	CTTTCTTTCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT	C	1657.73	.	AC=2;AF=1.00;AN=2;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.63;QD=40.43;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	70119245	rs12950966	C	G	2931.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	70120551	rs1042667	A	C	7332.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	70845688	rs12449747	C	A	503.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	70845949	.	CA	C	333.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.437;QD=2.57;ReadPosRankSum=0.750;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:83,47:0.36:130
chr17	70846027	rs4998297	G	A	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	70846116	rs4436821	C	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	70943990	rs2466517	T	C	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	71027543	rs9912666	G	A	227.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.78;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	71081078	rs9891809	G	A	3420.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	71189155	.	A	AGG	956	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=7;HapScore=1;MGOF=33;MMLQ=23;MQ=60.45;NF=13;NR=17;PP=956;QD=32.7333333333;SC=AAGATGGCGGAGGGGGCGGGA;SbPval=0.49;Source=Platypus;TC=36;TCF=15;TCR=21;TR=30;WE=71189163;WS=71189145;set=Platypus	GT:AD:AF:DP	1/1:6,30:0.83:36
chr17	71189182	rs3764359	A	G	2296.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	71192468	rs1052705	C	T	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	71192663	rs1052706	G	A	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	71192873	rs11544800	A	G	4346.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	71192955	rs1010442	C	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	71193594	rs7221701	G	A	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	71195949	rs1009110	C	T	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr17	71196809	rs1026128	A	G	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	71196995	rs1026129	G	A	678.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	71197200	rs1026130	T	C	599.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	71197748	rs1037256	G	A	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr17	71201675	rs3829571	T	C	3787.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	71202777	rs200268966	CT	C	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.333;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=1.549;QD=4.15;ReadPosRankSum=-2.592;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:20,18:0.47:38
chr17	71203231	rs57965299	CAAAAA	C	894.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=34.41;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	71205854	rs8387	A	G	7808.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr17	71208647	rs10717516	GC	G	2983.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	71223424	rs71154980	GA	G	342.74	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:4,24:0.86:28
chr17	71223501	rs17184168	T	C	239.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr17	71231604	rs3751925	A	C	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	71232687	rs745143	T	C	3788.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	71232804	rs904384	C	A	11028.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,244:1.00:244
chr17	71232807	rs904383	T	C	11080.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	71232881	rs745142	G	C	10035.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr17	71233130	rs11869253	A	G	6519.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr17	71238433	rs1566286	G	A	6167.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	71238525	rs1566287	A	G	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	71238649	rs5821951	T	TC	586.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	71238693	rs1566288	T	C	245.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	71239000	rs2270726	T	C	159.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	71239016	rs2270727	C	T	160.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr17	71239190	rs2270728	A	T	1177.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.06;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	71239214	rs138600770	GAA	G	1166.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=43.21;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	71239227	.	T	TG	1076.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=44.86;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	71239234	.	T	TTTTG	1142.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=42.32;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	71244630	rs8915	C	T	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	71257804	rs72849296	A	C	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	71281894	.	A	G	5879.77	.	AC=2;AF=1.00;AN=2;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	71344584	rs4969105	G	A	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.81;SOR=1.818;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	71344588	rs111569409	G	A	7495.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr17	71344668	rs75637704	C	T	12693.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr17	71344889	rs9905883	C	T	1583.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	71346353	rs28397959	A	C	3035.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	71346750	rs1995163	C	G	2777.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.108;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.481;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.96;ReadPosRankSum=-0.714;SOR=0.595;set=HC	GT:AD:AF:DP	1/1:1,106:0.99:107
chr17	71346943	rs4969107	A	G	1806.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	71357810	rs2279732	G	A	6865.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr17	71358045	rs11657033	T	C	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	71365314	rs867998	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	71375794	rs62072075	C	T	2551.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	71376869	rs12941386	C	T	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	71382747	rs7212508	T	C	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr17	71390366	rs904381	C	A	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	71397375	rs7226251	T	G	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	71415245	rs8071352	G	A	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	71418605	rs9894213	T	C	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	71420035	rs6501636	T	C	2315.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	71426656	rs1105353	G	T	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	71426670	rs1105354	G	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	71429674	rs11652365	C	T	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	71429776	rs8071524	G	A	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr17	71443924	rs7209875	A	G	1997.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	71503636	rs9895895	T	C	3697.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	72209858	rs7206926	A	G	11423.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr17	72245986	rs36208397	CCACTGTGGGGCTCCTGGGAGACGGAGCCT	C	3531.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	72281367	rs6501706	A	G	5508.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	72285659	rs35604335	CA	C	532.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.614;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.640;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.45;ReadPosRankSum=0.208;SOR=1.410;set=HC	GT:AD:AF:DP	0/1:9,42:0.82:51
chr17	72295830	rs72848284	C	T	4393.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	72297104	rs34880269	C	T	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	72297180	rs8076337	A	G	2541.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	72301432	rs8073660	A	G	18970.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,706:1.00:706
chr17	72303449	rs11867486	G	A	3589.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	72305534	rs2290955	C	T	7283.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr17	72305688	rs2290956	T	C	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	72305753	rs2290957	C	T	1153.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	72306116	rs66769719	CCT	C	7218.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	72308319	rs1979370	G	A	2968.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	72308403	rs4239008	G	A	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.80;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	72308410	rs4239009	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.80;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	72308447	rs1979371	G	A	87.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr17	72310476	rs2054400	G	A	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	72321928	rs7207519	T	C	530.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	72322881	rs8082699	G	A	8659.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	72324649	rs11412158	G	GC	5779.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr17	72332849	rs1111596	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	72338164	rs11285065	TC	T	3881.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	72344723	rs75219617	TGTAA	T	7511.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;MQ=60.25;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	72346736	rs12451539	C	T	9074.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,353:1.00:353
chr17	72346855	rs11077744	T	C	8755.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr17	72348741	rs11655890	T	C	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	72348810	rs1814832	A	C	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	72349067	rs2280108	C	T	8451.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	72350277	rs2382642	T	G	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr17	72350412	rs2271535	G	A	7593.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	72357585	rs6501712	A	G	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	72357805	rs12939498	C	T	6790.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	72366695	rs2382647	C	A	7936.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.700;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	72369704	rs12451435	G	A	722.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	72439700	rs9893663	T	G	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	72439808	rs3840056	TG	T	8103.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	72443192	rs2706527	G	T	4481.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	72519798	rs1472726	C	T	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	72521897	rs17553512	G	A	6526.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	72527718	rs965229	A	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	72610089	rs1878061	C	T	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	72691928	rs2034310	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.90;SOR=0.748;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	72699384	rs749780	C	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr17	72700943	rs35489971	A	G	12409.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr17	72736755	rs11651291	A	G	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	72791088	rs3830567	A	AG	1791.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.737;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=0.759;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=2.059;QD=12.44;ReadPosRankSum=1.369;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:33,111:0.77:144
chr17	72791266	rs9910463	G	A	3024.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	72791618	rs7221435	A	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	72832032	rs72851753	C	G	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	72832928	rs11558036	G	A	2843.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	72834954	rs3826320	C	A	1268.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	72838481	rs939536	C	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	72838649	rs3744215	C	A	16536.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr17	72839130	rs139495021	A	AGCTCCGGGG	726.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	72843378	rs3826314	C	T	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	72843411	rs3833106	GC	G	4707.73	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:3,167:0.98:170
chr17	72843923	rs3744192	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	72844165	rs3744193	C	T	3358.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:1,127:0.99:128
chr17	72847548	rs3744194	G	T	785.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	72848758	rs75018418	C	CG	10265.73	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	72848772	rs199662980	G	GC	8779.73	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr17	72848778	rs201209302	C	CG	7961.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	72848800	rs117147802	C	G	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	72848828	rs116833065	A	G	1728.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	72851133	rs689730	A	G	5081.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	72859078	rs690371	A	G	21945.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,806:1.00:806
chr17	72860253	rs552432	A	G	6393.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr17	72861974	rs2467577	G	A	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	72861991	rs2070919	C	T	4385.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.11;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	72862155	rs516035	T	G	1117.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	72862593	rs690514	C	T	5668.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr17	72862809	rs509911	T	C	2689.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	72863030	rs1688149	T	C	2464.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	72864768	rs560323	A	G	4439.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr17	72869078	rs492095	A	G	6030.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr17	72888836	rs489152	G	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	72889676	.	G	GGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATGGGCTCCGTAGGTTCCATC	11091.73	.	AC=2;AF=1.00;AN=2;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.86;QD=44.55;SOR=0.702;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	72929560	rs34788249	G	A	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	72937605	rs7210616	G	A	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr17	72937851	rs9890664	G	A	8045.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.09;SOR=0.956;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	72938100	rs1542752	T	C	7290.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	72939446	rs4789110	C	T	13325.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr17	72939663	rs8069015	G	A	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	72939854	.	AAC	A	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.278;QD=6.82;ReadPosRankSum=1.213;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:37,19:0.34:56
chr17	72943126	rs8066909	G	A	8478.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr17	72948369	rs17853024	A	G	3567.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	72951823	rs9899490	C	T	4560.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	72951845	rs9903414	G	A	5884.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	72952017	rs9906160	A	G	2858.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	72956124	rs3744198	G	A	11152.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	72959000	rs7503218	G	C	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr17	72983888	rs7222918	A	C	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr17	73089852	rs4788863	T	C	13519.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr17	73094072	rs10598249	TCTC	T	1780.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	73096951	rs4238978	A	G	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	73110144	rs1531565	G	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=1.154;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	73110279	rs1531564	C	T	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	73124692	rs2291028	C	T	1838.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	73125173	rs2291027	A	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	73126746	rs10715821	GT	G	13237.73	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	73127024	rs9910084	C	G	4046.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr17	73127683	rs4788867	T	C	1042.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	73138722	.	G	GAGGGA	500.73	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.39;QD=45.52;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	73138980	rs151283915	TAC	T	342.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	73143574	rs1382508	T	A	207.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	73177444	rs1471453	C	A	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	73204530	rs899326	T	C	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.94;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	73204535	rs10579016	CAA	C	164.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.30;ReadPosRankSum=-2.627;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr17	73208182	rs12946479	C	T	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:3,135:0.98:138
chr17	73208205	rs56406015	G	GTGTT,GTGTGTT	5093.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=137;set=Intersection	GT:AF:DP	1/2:0.35,0.65:118
chr17	73211642	rs9909306	A	G	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	73221439	rs2291029	C	T	5278.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	73222847	rs1551967	C	T	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	73222865	rs1478785	G	A	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	73228101	rs899318	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	73230856	rs9988	C	T	8064.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr17	73231638	rs4788874	G	A	1885.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	73231817	rs3841603	AT	A	2405.73	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	73236605	rs11077781	C	A	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	73240559	rs2306216	A	G	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	73240836	rs4789156	T	C	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	73242895	rs2242230	A	G	6293.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr17	73242935	rs2242231	A	G	3683.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	73257830	rs2279161	C	T	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	73257986	rs8075276	C	T	5555.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr17	73258085	rs36039201	GGC	G	1260.84	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:6,49:0.89:55
chr17	73258479	rs6501772	C	T	9347.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr17	73259083	rs2279162	C	T	1406.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73268801	rs3744231	C	T	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	73269530	rs1809352	A	G	1802.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr17	73269676	rs4789164	C	T	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr17	73279624	rs7213318	A	G	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	73279700	rs4788882	C	T	5093.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	73282299	rs2306218	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	73282636	rs2306219	C	T	4079.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	73316679	rs8079197	G	C	1925.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr17	73317644	rs12946365	C	T	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr17	73328773	rs1529844	T	C	2888.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	73389446	rs4788890	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	73402246	rs7220246	C	A	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.25;SOR=0.949;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	73472682	rs142827893	TTC	T	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=3.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=0.547;SOR=0.095;set=HC	GT:AD:AF:DP	0/1:20,4:0.17:24
chr17	73482110	rs11331365	TC	T	2117.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	73482664	rs9899149	T	C	756.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	73484753	rs11652993	C	G	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	73485033	rs11867527	T	C	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	73485781	rs8079362	C	T	17915.77	.	AC=2;AF=1.00;AN=2;DB;DP=682;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr17	73488794	rs4078259	C	T	14458.77	.	AC=2;AF=1.00;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr17	73489220	rs7215753	T	C	8654.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr17	73489567	rs4078474	C	G	11120.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr17	73490611	rs8078131	A	G	1147.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	73491894	rs11077792	G	A	1540.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	73494963	rs9894026	G	A	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	73497415	rs8081353	T	C	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	73497415	.	TTT	CTC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.1;FR=1.0000;HP=2;HapScore=1;MGOF=20;MMLQ=28;MQ=60.0;NF=70;NR=15;PP=2947;QD=20;SC=ATCTAGGTGATTTCAACACCT;SbPval=0.66;Source=Platypus;TC=96;TCF=77;TCR=19;TR=85;WE=73497425;WS=73497405;set=Platypus	GT:AD:AF:DP	1/1:11,85:0.89:96
chr17	73497417	rs8081354	T	C	4510.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=2.856;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	73497439	rs8075850	G	A	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr17	73497794	rs9892311	T	C	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	73498483	rs7503373	T	C	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	73498623	rs7502835	A	G	6308.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	73498652	rs77001351	G	A	7983.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr17	73499697	rs7207376	T	C	7872.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr17	73501752	rs8069700	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	73502118	rs28558885	G	A	3507.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	73504416	rs6501815	T	C	6015.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr17	73510012	rs4789206	A	T	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	73512653	rs7216673	G	T	545.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	73513185	rs7218675	C	A	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	73515055	.	A	AT	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=-0.209;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:112,35:0.24:147
chr17	73518203	rs9911502	G	C	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr17	73518284	rs6501820	G	C	3200.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	73519413	rs8064529	C	T	3196.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	73539631	rs6501822	A	G	3287.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr17	73552062	rs2305528	G	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	73552185	rs1671036	G	A	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr17	73554523	rs1671033	C	G	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	73565262	rs2305526	T	A	8443.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr17	73569511	rs117651797	C	T	12028.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr17	73569735	.	T	TCTCCCGCCC	2798.73	.	AC=2;AF=1.00;AN=2;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	73587268	rs2290455	C	T	12889.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr17	73587347	rs11656113	G	A	6640.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr17	73587640	rs707709	T	C	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr17	73588027	rs746840	C	T	3886.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr17	73588058	rs736522	G	T	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.26;SOR=0.794;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	73588067	rs736523	A	G	8624.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.70;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,202:1.00:202
chr17	73590436	rs820254	A	G	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	73590522	rs820255	G	A	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	73590817	rs2305524	C	T	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	73590830	rs820256	T	G	6572.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	73597544	rs11871553	A	G	8468.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	73598904	rs62089251	C	G	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	73601517	.	T	TAA	396.73	.	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=28.34;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	73601755	rs936054	G	A	1373.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	73602081	rs8068464	G	A	3469.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	73607468	rs11077795	A	G	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	73608203	rs820140	T	C	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	73608744	rs11336364	CA	C	802.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=0.649;QD=13.16;ReadPosRankSum=-1.558;SOR=0.390;set=HC	GT:AD:AF:DP	1/1:7,54:0.89:61
chr17	73609112	rs820142	G	A	6370.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	73612461	rs371699907	CAGG	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.39;ReadPosRankSum=0.887;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:106,10:0.09:116
chr17	73612642	rs11439064	A	AT	17704.73	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr17	73619952	.	GCTTCT	G	11070.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=0.998;set=HC	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	73619953	.	CT	GG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=59.95;NF=122;NR=75;PP=2947;QD=20;SC=GGACCGGTGGCTTCTGGGGGT;SbPval=0.6;Source=Platypus;TC=212;TCF=128;TCR=84;TR=197;WE=73619965;WS=73619943;set=Platypus	GT:AD:AF:DP	1/1:15,197:0.93:212
chr17	73619955	.	TCTG	T	2948	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=28;MQ=59.98;NF=51;NR=76;PP=2948;QD=20;SC=ACCGGTGGCTTCTGGGGGTGG;SbPval=0.54;Source=Platypus;TC=132;TCF=53;TCR=79;TR=127;WE=73619965;WS=73619943;set=Platypus	GT:AD:AF:DP	1/1:5,127:0.96:132
chr17	73619958	.	G	GGT	11068.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr17	73620804	rs820187	C	A	4356.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	73621432	rs820188	A	G	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:1,163:0.99:164
chr17	73625286	rs820190	G	A	4783.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:2,180:0.99:182
chr17	73625478	rs820191	T	C	4759.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr17	73625629	rs820192	A	C	1830.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	73626208	rs820193	G	C	800.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73626817	rs820194	G	A	6682.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	73626829	rs820195	C	G	6777.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	73627539	rs820196	T	C	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	73627565	rs820197	A	G	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr17	73647138	rs1661744	CA	TG	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	73658489	rs820159	T	C	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	73661411	rs820157	A	G	898.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	73663296	rs2165635	CT	AG	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	73663313	rs864234	C	A	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	73664546	.	G	GT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.151;SOR=0.365;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr17	73668011	rs115695713	G	A	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	73687495	rs820218	G	A	4963.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr17	73698557	rs820232	C	T	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	73702317	rs820230	A	G	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	73702402	rs820229	T	C	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	73720638	rs820166	C	T	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	73720900	rs820167	A	G	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	73723453	rs34275940	GC	G	4604.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	73725239	rs71271523	CA	C	551.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=5.871;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.848;QD=9.68;ReadPosRankSum=0.691;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:12,45:0.79:57
chr17	73725298	rs1661674	C	T	11119.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=45.76;SOR=1.251;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	73725301	rs34598265	C	T	11315.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=45.63;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	73725304	rs1661675	C	G	11380.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=44.46;SOR=1.206;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	73726685	rs1093996	T	C	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.20;ReadPosRankSum=-0.293;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:5,29:0.85:34
chr17	73735725	rs180763710	C	T	4181.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	73735920	rs2290459	G	A	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr17	73736740	rs2290457	G	C	794.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	73738615	rs2290456	T	C	21236.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,816:1.00:816
chr17	73746146	rs820387	T	C	7725.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	73751042	rs3988219	C	CACAT	9460.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	73752999	rs2249613	C	G	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr17	73753503	rs871443	T	C	7388.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr17	73753661	rs9367	C	T	7243.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr17	73759038	rs35008831	TC	T	5587.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr17	73759304	rs820386	G	T	2898.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	73759552	rs7209235	G	A	1983.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	73780506	rs11655389	G	A	555.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	73780813	rs147842313	A	G	10216.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr17	73781075	rs11335367	GC	G	201.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.42;ReadPosRankSum=0.447;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr17	73812909	rs9908146	A	G	6447.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	73813181	.	CAGAGCCTGTGCTGATGAGCCTGTAGGACTGG	C	2966	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=27;MQ=60.83;NF=0;NR=16;PP=2966;QD=20;SC=GGGCAGTCCCCAGAGCCTGTG;SbPval=1.0;Source=Platypus;TC=16;TCF=0;TCR=16;TR=16;WE=73813219;WS=73813171;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	73816026	rs11868471	A	G	13643.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr17	73893125	rs56098159	C	T	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	73913729	rs4788912	C	G	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	73913965	rs11288315	TC	T	1875.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	73949540	rs1135640	G	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	73951864	rs10852766	T	C	7669.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	73953404	rs11077798	T	C	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	73997474	rs2069528	G	A	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	74007846	rs2290251	A	G	3347.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr17	74014634	rs7218767	G	T	6373.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr17	74017554	rs74955334	G	T	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752;ClippingRankSum=0.000;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-8.517;QD=2.47;ReadPosRankSum=3.362;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:108,16:0.13:124
chr17	74017573	rs78569674	C	G	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-8.807;QD=2.19;ReadPosRankSum=2.371;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:116,16:0.12:132
chr17	74017594	rs193119748	A	G	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-8.699;QD=2.33;ReadPosRankSum=-0.061;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:113,16:0.12:129
chr17	74017677	rs200115767	G	GCC	2849.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	74017700	rs71161251	T	TC	3146.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	74018655	rs2598417	C	T	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	74019356	rs60346043	G	A	3082.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	74019572	rs2257388	T	C	2300.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr17	74066303	.	C	CA	114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=1.480;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr17	74076127	rs34700740	TC	T	2540.73	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	74076415	rs2257020	G	A	17792.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,682:1.00:682
chr17	74076642	rs2257028	G	A	14106.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr17	74077497	rs8836	G	C	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	74079838	rs2665986	A	G	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	74081345	rs2246277	C	T	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	74081618	rs2598450	C	T	1770.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	74324729	rs346791	C	A	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.979;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	74326553	rs449114	G	A	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.68;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	74326556	rs399029	A	T	1918.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	74381555	rs2247856	G	A	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	74381567	rs346803	G	A	1618.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	74387284	rs3803739	C	T	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr17	74398514	rs11652985	G	C	1599.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	74401405	rs11290311	AG	A	5970.73	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	74468552	rs12942767	A	G	6766.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,255:1.00:255
chr17	74471298	rs12951122	G	A	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	74473593	rs3833088	A	AG	4001.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	74475024	rs3744045	G	A	3777.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	74477340	rs3826288	A	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	74477691	rs11870168	C	T	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	74524651	rs4238995	TT	GG	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	74536332	.	T	TG	178.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.51;ReadPosRankSum=-1.173;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr17	74536333	rs77817682	C	G	1280.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.02;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	74539092	rs4318240	C	T	9007.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	74541001	.	G	C	665.77	.	AC=1;AF=0.500;AN=2;DP=137;set=Intersection	GT:AD:AF:DP	0/1:96,40:0.29:136
chr17	74541129	rs4232870	A	G	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	74557681	rs4510053	A	C	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr17	74557803	rs60161580	GT	G	4320.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:9,214:0.96:223
chr17	74563653	rs2241918	A	G	6500.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	74563706	rs60647948	A	G	6249.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	74569198	rs34207189	C	T	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	74570408	rs7207173	A	G	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	74581945	rs12449329	AA	GC	2580.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	74582025	rs1867561	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	74639530	rs719430	T	C	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr17	74681435	rs2286593	A	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	74684598	rs4788942	C	T	6749.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	74684858	rs7219390	T	C	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr17	74707050	rs71383084	G	C	80.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	74707086	rs372946783	CGTCGCCGCGCCCG	C	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	74716759	rs12943725	A	G	596.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	74721488	.	C	CAAA	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=4.771;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.967;QD=4.48;ReadPosRankSum=1.184;SOR=0.048;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr17	74721967	rs376352692	TA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.43;ReadPosRankSum=1.038;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr17	74728938	rs4789351	C	T	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	74732507	rs237058	A	G	13183.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr17	74733099	rs237057	G	A	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr17	74733403	rs3744061	G	A	344.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	74734323	rs237054	G	A	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	74734598	rs237053	C	T	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	74736999	.	CT	C	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.927;QD=0.62;ReadPosRankSum=0.565;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:94,29:0.24:123
chr17	74750215	rs11399997	C	CT	8829.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr17	74750331	rs116719	C	T	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	74763667	.	T	G	557.77	.	AC=2;AF=1.00;AN=2;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	74920957	rs3889146	G	T	3123.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	74922636	rs12450749	G	A	1928.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	74922652	rs11653088	C	T	2668.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	74936429	rs920851	T	C	11462.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr17	74944252	.	G	A	4394.77	.	AC=2;AF=1.00;AN=2;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	74944585	rs11870033	T	C	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr17	74944709	rs9894270	T	C	15867.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.08;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,352:1.00:352
chr17	74944714	rs57502449	C	G	16073.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.80;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,367:1.00:367
chr17	75085226	rs3214724	TC	T	1697.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	75085260	rs2247814	C	G	2949.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	75085434	rs2678770	G	A	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	75187043	rs57813047	C	T	1722.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	75187413	rs73998646	G	A	9055.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	75190846	rs673918	A	C	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr17	75196835	rs117048292	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	75202584	rs78693553	A	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	75202977	rs77192465	C	T	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr17	75207964	rs117178832	C	T	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	75207964	.	CGA	TGG	672	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=25;MQ=60.0;NF=13;NR=3;PP=672;QD=45.3417421789;SC=CTGGAGAGCACGATGCGCTCG;SbPval=0.59;Source=Platypus;TC=16;TCF=13;TCR=3;TR=16;WE=75207974;WS=75207954;set=Platypus	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	75207966	rs2280269	A	G	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.92;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	75209657	rs117041416	A	T	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	75209945	rs77792614	G	A	5715.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	75210054	rs75076568	C	T	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	75316497	rs3760143	C	T	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	75369578	rs7217986	T	C	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	75401190	rs2164449	G	A	2407.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	75401310	rs2117924	C	T	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	75471861	.	G	A	342.77	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:70,24:0.26:94
chr17	75494705	rs2627223	A	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.16;SOR=1.099;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	75494787	rs5822173	T	TC	885.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr17	76047561	rs3036709	TA	T	143.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=2.086;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.919;QD=6.25;ReadPosRankSum=0.270;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:8,15:0.65:23
chr17	76087407	rs60735984	C	CA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.515;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr17	76137198	rs369764	T	G	1793.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	76198754	rs35822441	T	C	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	76218857	rs4789559	G	A	2393.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	76219123	.	TAGACTAGCTGGGGTGCCC	T	785	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=2;HapScore=1;MGOF=8;MMLQ=23;MQ=66.18;NF=0;NR=8;PP=785;QD=103.5;SC=CTGGGGTGCCTAGACTAGCTG;SbPval=1.0;Source=Platypus;TC=10;TCF=0;TCR=10;TR=8;WE=76219148;WS=76219113;set=Platypus	GT:AD:AF:DP	1/1:2,8:0.80:10
chr17	76219591	rs2071214	G	A	2328.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	76228088	rs8068943	T	A	1074.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr17	76235962	rs140627927	C	T	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	76268010	rs880316	C	T	5029.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.33;SOR=1.041;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr17	76394042	rs16971107	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	76394449	rs2292644	C	T	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr17	76395421	rs2292643	G	A	5477.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.03;SOR=3.164;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	76395430	rs2292642	C	T	5921.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.00;SOR=2.883;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr17	76395750	rs12450500	C	T	3366.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=4.643;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	76396963	rs3817294	A	G	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	76400236	rs3744219	G	A	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	76400258	rs3744217	G	A	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.67;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	76400268	rs3826323	C	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.07;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	76410871	rs3744216	G	A	2953.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	76411154	rs3833108	T	TG	1707.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	76422473	rs4969188	T	C	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr17	76423097	rs2271613	G	A	5082.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.80;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr17	76424482	rs651806	A	G	2649.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	76433685	rs2289757	A	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	76433898	rs12941494	T	C	4977.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr17	76435448	rs12150123	C	T	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	76451921	rs8069561	A	G	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	76455265	rs74335865	C	T	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	76456017	rs34438166	C	G	1467.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr17	76456352	rs623336	T	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	76456403	.	C	CGTGCATGTGTGTGCATGTGT	3929.73	.	AC=2;AF=1.00;AN=2;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,87:0.99:88
chr17	76457559	rs692529	T	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	76457910	rs640292	G	C	797.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	76462770	rs691225	G	A	6275.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	76480848	rs12952246	T	C	727.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	76482432	rs691151	A	G	8974.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr17	76488937	rs10655360	G	GTTTTTTTTTTT	1375.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.15;QD=37.18;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	76488973	rs1983306	A	G	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	76491127	rs691652	TG	CC	10691.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr17	76491194	rs11077375	G	A	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	76491211	rs11077376	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	76495050	rs691291	C	T	6916.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr17	76496492	rs2028734	A	G	5289.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	76496577	rs2028735	C	T	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	76497920	rs690844	C	A	10820.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr17	76498406	rs930572	A	G	3503.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr17	76498692	rs930571	C	T	7490.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr17	76498844	rs7218164	A	G	1842.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	76502734	rs11077378	T	C	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	76503527	rs9894913	G	A	8971.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr17	76503593	rs9896398	T	C	6391.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr17	76503966	rs9902653	T	C	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	76506607	rs867654	G	A	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr17	76533269	rs111781371	A	AAAAG	4255.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.75;QD=39.40;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr17	76535759	rs7220871	T	C	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	76535948	rs7221209	T	C	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr17	76554114	rs62075923	A	G	6473.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	76554147	rs4969171	A	G	8258.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,326:1.00:326
chr17	76557862	rs894966	T	C	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	76558159	rs2376587	T	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	76567707	rs894968	T	C	3523.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr17	76672002	rs1126607	T	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr17	76794774	rs3744799	T	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	76794981	rs2279308	A	G	9473.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr17	76798548	rs71964596	TTTTTTC	T	1607.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;QD=43.45;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	76799795	rs1057040	G	A	1968.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr17	76799860	rs3088040	T	C	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	76799898	rs9302885	A	G	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	76809019	rs117840411	C	T	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	76817090	rs3744793	C	T	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr17	76832133	rs900349	T	C	179.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr17	76867185	rs55743137	G	T	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	76897733	rs12941365	G	T	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr17	76897974	rs4789936	C	T	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	76970879	rs3744166	A	G	7820.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr17	76988668	rs75126416	T	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	76988803	rs115856545	C	T	2478.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	76988961	rs114125762	A	G	1163.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.10;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	76988968	rs79189369	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.19;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	76989475	rs117904862	C	T	284.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	76991418	rs3744169	T	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	76993546	rs8077024	A	G	4506.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr17	77076440	rs3744186	G	T	3991.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	77086806	rs62063826	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr17	77086851	rs148863918	G	GT	580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.91;ReadPosRankSum=1.079;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:10,35:0.78:45
chr17	77087005	rs112100897	C	CA	5756.73	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	77088634	rs10676066	G	GTAAT	1491.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr17	77088790	rs11286198	GA	G	1003.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.34;MQRankSum=0.404;QD=16.73;ReadPosRankSum=-0.794;SOR=0.443;set=HC	GT:AD:AF:DP	1/1:3,57:0.95:60
chr17	77089629	rs12602626	T	A	1757.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.167;MLEAC=2;MLEAF=1.000;MQ=60.11;MQRankSum=0.431;QD=18.70;ReadPosRankSum=-0.110;SOR=0.933;set=HC	GT:AD:AF:DP	1/1:13,81:0.86:94
chr17	77089630	rs371204042	GA	G	649.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.534;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.417;QD=6.50;ReadPosRankSum=0.387;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:47,53:0.53:100
chr17	77089873	.	CCACACACA	CCA,C	417	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.04;FR=0.5000,0.5000;HP=2;HapScore=3;MGOF=18;MMLQ=23;MQ=60.0;NF=1,1;NR=16,16;PP=417,102;QD=24.7058823529;SC=CAACAGCTGGCCACACACACA;SbPval=0.79;Source=Platypus;TC=22;TCF=2;TCR=20;TR=17,17;WE=77089890;WS=77089863;set=Platypus	GT:AF:DP	0/1:0.77:22
chr17	77090473	rs61042144	A	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	77090637	rs200668420	TGGGAGGAGGGTGG	T	1062.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.95;QD=42.51;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	77093026	rs8072150	T	C	2567.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	77093255	rs147472360	TC	T	686.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr17	77093734	rs59021665	A	G	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr17	77093768	rs58352742	T	C	8535.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr17	77102966	rs36122090	T	TC	1422.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	77751983	rs71368052	C	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	77809591	.	GC	G	7731.73	.	AC=2;AF=1.00;AN=2;DP=362;set=Intersection	GT:AD:AF:DP	1/1:11,308:0.97:319
chr17	77811733	rs371298714	TA	T	338.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.055;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.96;ReadPosRankSum=-0.993;SOR=1.244;set=HC	GT:AD:AF:DP	0/1:6,28:0.82:34
chr17	77811854	rs2289728	G	A	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	77914562	rs62076647	C	G	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	77926491	rs4889804	G	A	5838.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr17	78013724	rs2289527	G	C	3763.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	78021037	rs7207441	A	G	4271.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	78021214	rs7212525	T	C	1879.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	78021260	rs7212643	T	C	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	78023614	rs7219552	G	A	1322.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	78055757	rs61749058	CT	TG	8466.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,315:0.99:317
chr17	78063467	rs55987222	G	A	3742.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	78064064	rs7207166	G	A	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr17	78070996	rs72849388	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr17	78071052	rs12952612	T	C	6809.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr17	78071247	rs59252872	A	G	3236.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr17	78073201	rs55990144	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	78073355	rs56407805	A	G	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	78073562	rs2304854	A	G	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	78073589	rs2304853	T	C	4722.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	78078709	rs1800300	T	C	17583.77	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:1,636:1.00:637
chr17	78079481	rs8069491	C	G	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	78079509	rs12452721	T	G	3260.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	78079544	rs3816256	C	G	4721.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr17	78079597	rs1042393	A	G	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	78079643	rs1800301	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	78079669	rs1042395	G	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	78081526	rs3071247	A	AGCAGCGG	9986.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr17	78081551	rs2304845	T	C	7643.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr17	78081707	rs2252455	G	A	2392.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	78081982	rs2241888	G	A	2725.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr17	78082005	rs2241887	C	T	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	78082504	rs1800304	G	A	5452.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr17	78083726	rs2278619	A	G	8791.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	78084507	rs2304844	G	C	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	78084688	rs2304843	C	A	11898.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr17	78084940	rs199788201	GC	G	1623.73	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=1.100;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=37.76;ReadPosRankSum=-1.659;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:1,42:0.98:43
chr17	78084942	rs4889817	G	T	1632.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,42:0.98:43
chr17	78086043	rs2304838	C	T	3119.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	78086846	rs2304836	A	G	5914.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	78086953	rs2304833	G	A	4330.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	78087109	rs1800310	A	G	13542.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr17	78090928	rs2304832	G	A	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr17	78091405	rs1126690	G	A	6728.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr17	78092063	rs1042397	G	A	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	78157995	rs4889990	G	A	2777.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr17	78158063	rs4889991	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	78164427	rs12942414	A	G	1241.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.555;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=-1.258;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,50:0.98:51
chr17	78175483	rs2304856	T	C	6032.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr17	78175854	rs3813063	C	A	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	78176233	rs8069255	T	A	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	78178170	rs4889996	A	G	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr17	78178182	rs4889836	T	C	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.50;SOR=1.692;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	78178189	rs4889997	G	A	2461.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.487;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	78178830	rs11653893	A	G	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	78178893	rs11652075	C	T	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr17	78180618	rs4889998	A	C	4789.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	78210944	rs8070283	G	A	2042.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	78219065	rs7406843	C	A	12761.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr17	78219100	rs7406844	C	T	9188.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr17	78221850	rs12941437	A	G	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	78222280	rs7209848	A	G	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	78222565	rs7214131	A	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	78222638	rs34911974	GC	G	1793.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	78222661	rs9904116	C	T	806.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	78223103	rs8064518	C	A	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	78225167	rs140131205	G	A	6757.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr17	78252716	rs139217743	C	T	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	78252770	rs7219131	T	C	1578.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	78263403	rs147532787	A	G	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.46;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	78265667	rs7503557	T	C	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr17	78280030	rs8066993	C	T	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	78281088	rs61087724	G	T	1768.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	78286986	rs78857404	G	C	4130.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	78298938	rs6565674	A	G	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr17	78333840	rs8067292	T	C	4269.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr17	78348494	rs6565681	A	G	1220.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	78354661	rs4889848	C	T	10319.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr17	78359988	rs112876212	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr17	78360646	rs144520262	G	A	1893.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	78362300	rs6565683	A	T	1003.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.13;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	78396091	rs9907097	C	G	1701.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.781;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.64;ReadPosRankSum=0.773;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:2,70:0.97:72
chr17	78401588	rs8065290	G	T	3409.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr17	78404175	rs113730607	ATTTG	A	4665.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	78444658	rs12943620	T	G	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	78444948	rs11869626	A	C	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	78445702	rs1131609	A	G	3769.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr17	78446932	rs11657630	C	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	78765219	rs4969429	A	G	3213.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr17	78820212	rs3829572	G	A	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr17	78820329	rs3751945	C	T	8760.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr17	78854056	rs6420478	A	G	1813.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	78854223	rs2289759	A	G	11075.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr17	78854316	rs2289760	C	T	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr17	78859004	rs2016817	C	T	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr17	78882806	rs1468029	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr17	78896488	rs2271602	C	T	30950.77	.	AC=2;AF=1.00;AN=2;DB;DP=1156;set=Intersection	GT:AD:AF:DP	1/1:0,1153:1.00:1153
chr17	78897561	rs6565491	C	T	3562.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr17	78914245	rs17848659	G	T	3649.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.64;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr17	78919349	rs8080910	A	G	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	78919387	rs17848707	G	A	2198.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	78919558	rs1567962	C	T	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr17	78923178	rs3751940	C	T	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr17	78935197	rs9899178	C	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	78937925	rs3751938	C	T	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	78972326	rs10871491	A	G	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	79006850	rs11870986	T	C	10878.77	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr17	79007075	rs11150764	C	A	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	79009153	rs8073224	T	C	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	79010533	rs4969350	G	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	79010839	rs6565527	A	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	79031773	.	ACCCC	A	514.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.263;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.40;ReadPosRankSum=3.049;SOR=3.967;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr17	79060180	rs7210438	C	T	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr17	79089428	rs12450670	A	C	1239.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	79093056	rs10655340	A	AGGAGC	1045.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	79093142	rs144250320	C	CCGCGTGCCCTACCTCT	3447.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr17	79093432	.	CGGCCCCGCTCCCACAGTCACGGGCCCA	C	1212.73	.	AC=2;AF=1.00;AN=2;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr17	79095144	rs8073904	G	A	5106.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	79107017	rs148953276	CT	C	3673.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr17	79140505	rs12946891	C	G	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	79155116	rs906180	A	G	10309.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr17	79163649	rs2292182	G	A	5987.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr17	79165171	rs869370	G	A	6995.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr17	79171967	rs2659016	A	G	2750.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr17	79173184	rs2659015	T	C	3101.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr17	79173224	rs2725419	T	C	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr17	79173398	rs906176	A	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	79173462	rs906175	C	T	2467.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	79174221	rs2466773	T	C	2629.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr17	79180775	rs2256881	A	G	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	79182667	rs9896314	A	G	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	79182778	rs62075318	T	C	3034.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	79202956	rs2048057	T	C	8308.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr17	79213305	rs2659009	G	A	689.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	79213562	rs2255166	T	C	4446.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	79219500	rs10569617	AATG	A	8901.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	79220224	rs2725405	G	C	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr17	79250096	rs141354072	G	C	1685.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:1,52:0.98:53
chr17	79372928	.	A	AGTGT	1348.73	.	AC=1;AF=0.500;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	0/1:6,36:0.86:42
chr17	79373203	rs182760976	C	A	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:4,114:0.97:118
chr17	79385274	.	C	CCCTGCCTG	876.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.58;MQRankSum=0.559;QD=36.53;ReadPosRankSum=1.163;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr17	79389251	rs9897258	C	T	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr17	79389486	rs11870740	G	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	79390260	rs151241907	G	GGTGT	2542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.165;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-0.255;QD=26.77;ReadPosRankSum=1.088;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:14,81:0.85:95
chr17	79390277	.	G	A	593	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5000;HP=2;HapScore=2;MGOF=72;MMLQ=26;MQ=57.21;NF=34;NR=6;PP=593;QD=15.6942803137;SC=GTGTGTGTGTGTGTCCATGAG;SbPval=1.0;Source=Platypus;TC=114;TCF=68;TCR=46;TR=40;WE=79390285;WS=79390267;set=Platypus	GT:AD:AF:DP	1/0:74,40:0.35:114
chr17	79390298	.	T	TGCGTGTGCGCGTGTGTGTCCATGAAAATGGGTGTGTGCATGTGTATGTCCATGAGGATGGGTGTGTGC,TGC	7217.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=175;set=Intersection	GT:AF:DP	1/1:1.00:170
chr17	79390339	.	GTT	G	2226	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=4;HapScore=1;MGOF=43;MMLQ=23;MQ=58.02;NF=56;NR=87;PP=2226;QD=15.8111888112;SC=GTGTGTGCGTGTTTGTGTGTA;SbPval=0.51;Source=Platypus;TC=144;TCF=56;TCR=88;TR=143;WE=79390357;WS=79390313;set=Platypus	GT:AD:AF:DP	1/0:1,143:0.99:144
chr17	79390370	rs36169187	CGT	C	11275.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr17	79395814	rs34098647	A	AT	1646.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:19,98:0.84:117
chr17	79402514	rs12600846	C	T	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr17	79409309	rs12938890	A	G	3028.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr17	79414307	rs7213444	A	G	12244.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr17	79414914	rs10871497	A	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr17	79418260	rs6565571	A	G	3149.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr17	79418770	rs61746096	C	T	9119.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	79418983	rs34593866	G	GC	7668.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:5,276:0.98:281
chr17	79424516	rs12601317	A	G	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	79425141	rs78579961	C	T	1126.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	79426481	rs4969273	A	G	3568.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr17	79427794	rs3744147	C	G	4308.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr17	79427822	rs3744148	C	T	4822.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr17	79429711	rs3736072	C	T	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	79429852	rs8746	C	T	6388.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr17	79502316	rs138055235	A	C	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr17	79508263	rs62076028	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	79508400	rs14422	T	C	4165.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	79508484	rs58483803	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	79508506	rs2228698	G	T	2744.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr17	79510899	rs7406506	A	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	79511135	rs8077430	A	G	6714.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr17	79513881	rs369579337	TA	T	156.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.935;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.80;ReadPosRankSum=-0.218;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:59,28:0.32:87
chr17	79514129	rs11552304	G	A	6334.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr17	79514832	rs7224579	G	A	9466.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr17	79515075	rs6565593	A	G	2072.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	79519382	rs4076968	G	A	3578.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	79526402	rs4073997	G	C	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr17	79526569	rs4076819	C	G	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	79530993	rs8070929	G	T	2473.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.04;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chr17	79539213	rs117824378	T	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	79567610	rs7213849	C	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	79573860	rs10695650	C	CTTAA	3680.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr17	79577127	rs8077038	T	G	1290.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr17	79612541	rs34896443	G	A	15463.77	.	AC=2;AF=1.00;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr17	79615225	rs7406494	G	T	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr17	79637349	rs10438817	T	C	7404.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	79662113	rs374904464	C	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr17	79766825	rs7406228	C	A	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	79767019	rs200551811	TCTGTCTGC	T	8792.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:4,218:0.98:222
chr17	79767530	rs370243345	CCTGT	C	8431.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr17	79767602	.	T	TCTGTCTGCCTGC	10420.73	.	AC=2;AF=1.00;AN=2;DP=298;set=Intersection	GT:AD:AF:DP	1/1:3,233:0.99:236
chr17	79768848	rs2272030	A	G	4140.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=3.042;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr17	79769466	rs28454947	T	C	5194.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:2,201:0.99:203
chr17	79770740	rs5384	C	T	8910.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr17	79784101	rs374374934	GCA	G	808.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=614;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.39;ReadPosRankSum=0.706;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:498,85:0.15:583
chr17	79784105	rs144826913	A	G	10533.77	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:98,481:0.83:579
chr17	79784107	.	A	G	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DP=622;ExcessHet=3.0103;FS=0.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=1.298;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:521,74:0.12:595
chr17	79791597	rs35031019	A	G	1614.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	79791792	rs34856581	G	A	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr17	79803101	rs1130674	A	G	6413.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.55;ReadPosRankSum=-0.852;SOR=0.875;set=HC	GT:AD:AF:DP	1/1:2,249:0.99:251
chr17	79803433	rs35649520	G	A	5354.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:1,204:1.00:205
chr17	79805003	rs111301737	A	G	6310.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr17	79805134	rs2070871	G	A	8341.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr17	79817005	rs1010954	G	A	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr17	79818159	rs35766162	T	C	6972.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	79818260	rs11558886	G	T	9385.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr17	79818360	rs1130664	T	G	4305.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr17	79827163	rs113301975	C	T	21002.77	.	AC=2;AF=1.00;AN=2;DB;DP=775;set=Intersection	GT:AD:AF:DP	1/1:0,771:1.00:771
chr17	79862882	rs146889521	C	G	7421.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr17	79872129	rs1879568	A	G	12473.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:2,473:1.00:475
chr17	79872241	rs1879569	A	G	15375.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr17	79891147	rs61747618	T	C	4702.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr17	79893962	rs34419046	G	A	10617.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr17	79898644	rs2293098	G	A	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	79899272	rs4796856	A	G	4217.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr17	79899283	rs118129884	C	T	4241.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr17	79899495	rs4796854	G	A	6518.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr17	79899698	rs4796852	G	A	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	79911164	rs78951919	A	AG	724.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	79912103	rs4796851	C	T	7384.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	79914661	rs35872546	T	C	11017.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr17	79915629	rs36023555	A	G	1584.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr17	79915647	rs35069988	A	G	2409.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr17	79915863	rs34107062	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr17	79935636	rs9906594	C	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.51;SOR=1.828;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	79936986	rs55671960	T	C	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr17	79967461	.	G	GGGGGCGACTGAGGCACAGCTCTGACGGGGCCCCCCTGAGGTCTACGGATGGGACGTA	1571.73	.	AC=2;AF=1.00;AN=2;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=41.36;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	79967791	rs36093868	C	CT	52.73	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr17	79967963	rs72296786	G	GTT	771.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.451;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=20.86;ReadPosRankSum=0.569;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:2,35:0.95:37
chr17	79972901	rs9895872	C	T	3153.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr17	79974731	rs13087	T	C	4463.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	79977813	rs4969471	C	G	5506.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr17	79980756	rs3934983	C	A	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr17	79980891	rs4444402	C	T	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr17	79982476	.	T	C	3216.77	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr17	79989546	rs190408119	C	T	244.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr17	79990418	rs145796187	C	CTTCCACG	6863.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr17	79990972	rs10708637	CG	C	1526.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	79991701	rs139309995	T	C	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr17	80000899	rs9907483	A	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	80006504	rs1128009	T	C	605.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr17	80006812	rs8069068	C	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	80006957	rs12948507	A	C	6074.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	80007018	rs12939972	T	C	8530.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr17	80007055	rs62078730	T	C	11102.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr17	80007080	rs28404464	T	C	24763.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.86;SOR=0.952;set=HC	GT:AD:AF:DP	1/1:0,552:1.00:552
chr17	80007088	rs28696285	C	G	25156.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,575:1.00:575
chr17	80007307	rs11653935	A	G	37802.77	.	AC=2;AF=1.00;AN=2;DB;DP=1461;set=Intersection	GT:AD:AF:DP	1/1:1,1454:1.00:1455
chr17	80007887	rs9915228	A	G	23595.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.29;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,545:1.00:545
chr17	80007897	rs9915742	G	T	23039.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.18;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,510:1.00:510
chr17	80008018	rs9893491	A	G	8406.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr17	80008392	rs9916764	G	T	9322.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr17	80008676	rs4464142	A	C	5464.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr17	80009156	rs28552909	T	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.441;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr17	80009668	rs117999554	C	G	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr17	80013235	rs4969464	A	G	2726.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr17	80014861	rs4969484	T	G	7548.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr17	80018714	rs58204115	C	T	13643.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr17	80020974	rs4531805	C	T	1518.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	80022656	rs34249409	C	CG	1530.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr17	80040607	rs4969465	T	C	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	80043349	rs17848939	C	T	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr17	80043739	rs2229422	A	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.02;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80050272	rs17848925	G	A	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr17	80050554	rs10591316	CGG	C,CG	732.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=44;set=Intersection	GT:AF:DP	1/1:0.96:24
chr17	80051183	rs2228309	A	G	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr17	80053166	rs45555535	C	T	10654.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr17	80054375	rs17848934	C	A	7227.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr17	80059596	rs13949	T	C	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,159:1.00:159
chr17	80059758	rs7225637	G	A	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:2,103:0.98:105
chr17	80065244	rs112663677	C	CGGGAGTG	1583.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	80071244	rs7211808	T	C	5638.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr17	80085283	rs73360060	C	T	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr17	80085295	rs74001545	C	T	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80085326	rs62078305	G	A	3078.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	80085341	rs62078306	A	G	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr17	80085633	rs11077969	A	G	4171.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	80085703	rs7213172	G	T	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr17	80086386	rs7406162	C	T	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.47;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr17	80086389	rs7406163	C	T	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.04;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr17	80086395	rs4625783	T	C	2075.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.36;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	80086597	rs4459614	C	T	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.16;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	80092131	rs4789753	T	C	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr17	80092171	rs4789752	A	G	1155.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr17	80103631	rs35131420	T	C	1954.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr17	80195582	rs9303026	T	C	7805.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr17	80198007	rs9901910	G	C	6639.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr17	80218800	rs35693344	G	A	1639.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr17	80275253	rs3176829	T	C	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=1.051;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	80320561	rs7502620	G	A	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr17	80332067	rs117408261	A	G	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr17	80350331	rs11903	G	A	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr17	80352138	rs6502106	T	C	3256.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr17	80352157	rs141814084	C	T	3603.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.60;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr17	80356019	rs9905077	C	G	4331.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr17	80356315	rs6502107	A	G	995.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80373377	rs8072110	G	T	14020.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr17	80376130	rs7220204	T	A	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	80376170	.	GCC	G	956.73	.	AC=2;AF=1.00;AN=2;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	80377690	rs1141463	T	G	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr17	80391684	rs4789773	A	G	8960.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr17	80394530	rs4789777	G	T	6894.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr17	80397484	rs28561791	A	G	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr17	80399193	rs7501824	C	T	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.14;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr17	80402296	rs7221125	G	A	5970.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr17	80404326	rs11077994	G	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr17	80426550	rs3214988	TA	T	1637.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr17	80438158	rs200052015	AGC	A	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.092;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr17	80438165	rs28451401	G	A	1271.73	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,59:0.80:74
chr17	80440296	rs149259276	T	TAAAACATGCGCGGTGGGCTGTTGACAAAATA	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=44.62;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80441195	.	C	CA	147.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DP=154;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.000;QD=1.02;ReadPosRankSum=1.689;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:113,32:0.22:145
chr17	80443296	rs11453409	C	CA	657.90	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:8,39:0.83:47
chr17	80443309	rs9890316	G	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	80521092	rs4789795	A	G	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80521135	rs4789796	T	C	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	80525802	.	CTTTTTTTTT	C	1868.73	.	AC=2;AF=1.00;AN=2;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;QD=38.93;SOR=1.352;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	80526139	rs2291395	A	G	397.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr17	80529466	rs146959082	G	T	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80529495	rs3794723	G	A	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	80545156	rs6502124	A	G	2193.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr17	80574082	rs753569	T	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.04;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	80574532	rs12950772	A	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.20;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr17	80577126	rs59969975	ATCT	A	808.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	80583230	rs3826309	A	G	12059.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:2,469:1.00:471
chr17	80585094	rs2291393	C	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	80601769	rs59318270	TA	T	4814.73	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr17	80602050	rs11649788	C	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80606200	rs148665559	C	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80618760	rs79808127	C	T	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr17	80619080	rs4789706	T	C	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr17	80626210	rs7221877	T	C	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,280:1.00:281
chr17	80656616	rs2243606	T	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80674643	rs2250000	C	G	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	80676633	rs150779405	GT	G	805.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr17	80676946	rs111661651	A	ACCACCCC	1128.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr17	80676971	rs7207719	C	G	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr17	80680589	rs3748812	G	A	282.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr17	80684638	rs2246103	T	C	3251.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:2,121:0.98:123
chr17	80685126	rs2243446	T	C	457.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr17	80693705	rs2256322	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	80696410	rs2253149	A	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80696542	rs2253132	G	A	1715.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.90;QD=25.23;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr17	80698542	rs77084831	G	C	909.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr17	80698587	rs75537818	G	A	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.217;set=HC	GT:AD:AF:DP	1/1:0,59:1.00:59
chr17	80699093	rs2252848	A	G	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr17	80700592	rs1994554	T	C	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr17	80700712	rs1994553	T	C	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr17	80706719	rs72318398	CTTG	C	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	80706928	rs2243416	G	A	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr17	80708601	rs1056534	C	G	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr17	80710097	rs11550062	G	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.92;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr17	80730527	rs615630	T	C	981.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr17	80755615	rs200393020	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.600;QD=3.86;ReadPosRankSum=-0.508;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr17	80755760	rs7215396	T	G	930.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr17	80772564	rs3744162	T	C	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr17	80785898	rs75044636	C	T	30444.77	.	AC=2;AF=1.00;AN=2;DB;DP=1141;set=Intersection	GT:AD:AF:DP	1/1:0,1140:1.00:1140
chr17	80785954	rs75047678	C	A	36984.77	.	AC=2;AF=1.00;AN=2;DB;DP=1398;set=Intersection	GT:AD:AF:DP	1/1:0,1395:1.00:1395
chr17	80786008	rs6502134	G	A	36562.77	.	AC=2;AF=1.00;AN=2;DB;DP=1438;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,1431:1.00:1431
chr17	80827955	rs7222931	A	G	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr17	80828281	rs74530485	C	T	8045.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr17	80841895	rs55681405	G	T	1350.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr17	80863857	rs2292971	T	C	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr17	80869550	rs78986388	C	G	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr17	80869706	rs12601746	C	G	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr17	80869775	rs12600371	T	C	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr17	80878263	rs2279064	G	C	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr17	80878389	rs1471197	A	G	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr17	80887194	rs729123	G	A	17040.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr17	80887537	rs146460515	CA	C	2744.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr17	80895253	rs8079398	G	A	2498.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr17	80895745	rs3785520	T	C	7623.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr17	80895769	rs3785521	A	G	8287.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr17	80895933	rs3785522	A	G	3142.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr17	80897492	rs8073471	A	G	4797.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr17	80963331	rs9901757	C	T	1403.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr17	81050833	rs74775917	A	AG	10577.73	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr17	81050982	rs7501742	G	C	11149.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr17	81051007	rs7502442	G	T	9344.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr17	81051887	rs7223467	T	G	1543.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr17	81052423	rs8269	G	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr17	81083419	rs28399067	G	A	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.20;QD=25.21;SOR=0.990;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	180211	rs79829832	CT	C	293.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.62;ReadPosRankSum=-0.116;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:72,40:0.36:112
chr18	196829	rs655781	G	A	1819.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	197741	rs35489764	AT	A	469.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:1,26:0.96:27
chr18	203081	rs471274	A	C	6145.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr18	204780	rs61607000	A	G	625.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr18	204815	rs56806027	T	A	1369.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	204816	rs4039610	T	TAAAAA	1360.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	214991	rs7343029	C	T	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr18	219029	rs1784834	G	A	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	224184	rs631343	C	G	4887.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	225051	rs7227515	C	T	536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=4.431;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-1.417;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:125,39:0.24:164
chr18	247834	rs16976866	T	G	693.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.816;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=2.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.63;ReadPosRankSum=-0.906;SOR=0.491;set=HC	GT:AD:AF:DP	0/1:104,46:0.31:150
chr18	252559	rs657138	G	A	8998.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr18	260108	rs11309829	TA	T	178.73	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=16.25;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	260140	rs72856275	T	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr18	319935	rs12190	T	C	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.90;SOR=1.702;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	319944	.	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.839;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr18	331827	rs9947291	C	T	2038.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:40,92:0.70:132
chr18	334742	rs2305027	C	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	334758	rs2305026	T	C	1782.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	334994	rs2305025	A	G	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr18	357570	rs685658	T	C	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr18	580366	.	C	T	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=0.134;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:59,18:0.23:77
chr18	606993	rs62090069	G	T	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:10,37:0.79:47
chr18	607024	rs62090070	A	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:14,54:0.79:68
chr18	607068	rs62090071	T	C	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:28,83:0.75:111
chr18	607210	rs62090072	T	C	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr18	618124	rs518471	T	C	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr18	619050	rs546696	G	T	461.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	624783	rs495688	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	624824	rs495799	T	C	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	625070	rs498466	G	A	823.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	627044	.	C	T	1789	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=1;HapScore=2;MGOF=10;MMLQ=25;MQ=58.16;NF=64;NR=12;PP=1789;QD=23.9969896388;SC=AAGAAAGAGTCGAGAAAGAAA;SbPval=0.53;Source=Platypus;TC=76;TCF=64;TCR=12;TR=76;WE=627052;WS=627013;set=Platypus	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	645176	rs565034	C	A	2900.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	657685	.	G	C	166	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=23;MQ=59.67;NF=12;NR=3;PP=166;QD=13.3847475031;SC=CGCGCCACTTGGCCTGCCTCC;SbPval=0.69;Source=Platypus;TC=56;TCF=43;TCR=13;TR=15;WE=657693;WS=657675;set=Platypus	GT:AD:AF:DP	1/0:41,15:0.27:56
chr18	658332	rs72634355	C	T	1696.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:36,70:0.66:106
chr18	662103	rs1001761	G	A	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:11,28:0.72:39
chr18	662370	rs2612095	T	C	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.055;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:18,56:0.76:74
chr18	669292	rs147919381	GTTGA	G	2537.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:26,64:0.71:90
chr18	670541	rs2847609	A	G	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:6,18:0.75:24
chr18	671520	rs2853536	C	T	3277.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:61,144:0.70:205
chr18	671648	rs2853537	A	T	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:21,21:0.50:42
chr18	672792	rs1059394	C	T	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr18	673016	rs699517	C	T	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:101,204:0.67:305
chr18	673086	rs2790	A	G	2007.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:37,85:0.70:122
chr18	674320	rs3744962	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chr18	674440	rs11081251	A	C	3845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.19;ReadPosRankSum=-1.809;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:88,183:0.68:271
chr18	674535	rs2847172	T	C	1525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.096;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.21;ReadPosRankSum=1.037;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:47,78:0.62:125
chr18	674579	rs111811424	C	T	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,20:0.31:65
chr18	677214	rs7229142	G	A	1715.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:54,76:0.58:130
chr18	677240	rs3819101	G	A	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:73,108:0.60:181
chr18	677302	rs2298583	G	A	5003.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:115,225:0.66:340
chr18	677931	rs2298581	C	G	1805.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:69,85:0.55:154
chr18	678847	rs2606246	T	C	689.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=0.488;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:85,44:0.34:129
chr18	678947	rs2741186	A	G	730.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	683094	rs2741183	C	G	829.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr18	683116	rs2741182	C	G	947.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:24,27:0.53:51
chr18	683441	rs11081266	G	A	857.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr18	685797	rs2847329	C	T	2856.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	688428	rs2847152	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:23,12:0.34:35
chr18	688463	rs2612088	G	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	690436	rs2847614	C	T	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:61,25:0.29:86
chr18	690702	rs145372402	A	AAGCTGTTTCCCCTGGAGAGTCC	694.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=13.392;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=0.961;QD=31.58;ReadPosRankSum=0.925;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr18	691173	rs2612087	G	A	8298.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr18	691266	rs2612086	A	G	897.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:96,46:0.32:142
chr18	693269	rs2612083	A	C	3666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=378;ExcessHet=3.0103;FS=1.327;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.75;ReadPosRankSum=0.393;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:256,120:0.32:376
chr18	693285	rs2606248	A	T	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:203,95:0.32:298
chr18	693767	rs2612082	C	T	182.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:28,10:0.26:38
chr18	693828	rs2305996	A	C	757.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:75,41:0.35:116
chr18	693977	rs2305995	G	A	3491.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:68,156:0.70:224
chr18	693986	rs3217714	GCT	G	9438.73	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr18	694206	rs2847602	A	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr18	697377	rs34911737	CTT	C	2397.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.798;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=0.533;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.633;QD=10.29;ReadPosRankSum=-2.191;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:162,71:0.30:233
chr18	706322	rs3831414	C	CACTG	1884.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	706570	rs34724061	G	T	5233.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:95,231:0.71:326
chr18	706589	rs2612102	A	G	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr18	712319	rs34015520	TCGG	T	2290.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	712356	rs3786350	G	T	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.17;QD=42.56;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	724612	rs537141	A	G	6299.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	739918	rs3840903	AT	A	73.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	742858	rs9961743	C	T	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	743226	rs3786347	A	G	259.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	743436	rs3786348	T	C	795.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.67;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	751858	rs200135493	GA	G	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.334;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr18	751880	rs34440107	C	CA	442.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.419;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.20;ReadPosRankSum=-0.259;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr18	904766	rs2231181	G	C	11844.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:2,449:1.00:451
chr18	905125	rs1893154	A	G	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:68,24:0.26:92
chr18	905537	rs2231183	T	C	5202.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	907675	rs8192597	G	A	9075.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr18	909561	rs2231187	A	G	1010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=3.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.13;ReadPosRankSum=-1.143;SOR=0.615;set=HC	GT:AD:AF:DP	0/1:28,49:0.64:77
chr18	1278665	rs1595005	C	T	4386.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:117,204:0.64:321
chr18	2539016	rs8084295	C	G	10298.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr18	2547480	rs35591317	T	C	3631.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:96,166:0.63:262
chr18	2552886	rs10502302	G	A	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=1.042;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	2587993	rs2271754	A	T	802.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:97,45:0.32:142
chr18	2595443	rs12456560	G	T	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr18	2606596	rs4035305	CTT	C	2698.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	2610978	rs3817350	G	A	1136.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	2616289	rs3786404	G	A	153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.844;QD=5.70;ReadPosRankSum=0.554;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:17,10:0.37:27
chr18	2656248	rs2430853	G	C	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:111,48:0.30:159
chr18	2666046	rs9947882	A	C	108.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:5,5:0.50:10
chr18	2674159	.	C	CT	268.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.917;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.532;QD=2.86;ReadPosRankSum=-0.444;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:68,26:0.28:94
chr18	2688798	rs637651	G	A	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	2698125	rs626994	T	C	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	2705615	rs62084217	A	G	196.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	2705633	rs8090967	T	A	352.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	2705700	rs635132	A	G	1249.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:18,64:0.78:82
chr18	2707619	rs2276092	G	A	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:77,108:0.58:185
chr18	2718265	rs62084229	A	G	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:26,48:0.65:74
chr18	2726365	rs16943716	C	G	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.416;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.236;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:36,11:0.23:47
chr18	2728686	rs10502304	T	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr18	2729177	rs17627559	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:4,13:0.76:17
chr18	2738352	rs10638660	T	TAGAC	1716.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr18	2738580	rs8094260	C	T	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:104,174:0.63:278
chr18	2740714	rs12327477	A	G	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:23,46:0.67:69
chr18	2750238	rs2304860	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:58,34:0.37:92
chr18	2750477	rs2304859	A	G	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,75:0.67:112
chr18	2751475	rs300293	A	G	1941.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	2771516	rs300291	G	T	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=26.34;SOR=0.884;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	2771643	rs3214732	A	AT	435.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr18	2777923	rs3213926	A	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,58:0.57:101
chr18	2778382	rs17552342	C	T	207.79	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr18	2784404	rs35853884	TGAAA	T	882.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr18	2784926	rs72866583	G	A	352.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr18	2795852	rs2298498	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chr18	2885118	rs592120	C	T	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	2892474	rs16943989	G	A	590.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.016;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=0.712;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:122,39:0.24:161
chr18	2892562	rs9956161	A	C	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:30,10:0.25:40
chr18	2909831	rs607411	C	G	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr18	2946291	rs643507	C	T	8062.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr18	2946605	.	G	A	2201.77	.	AC=1;AF=0.500;AN=2;DP=371;set=Intersection	GT:AD:AF:DP	0/1:244,123:0.34:367
chr18	2951447	rs138599261	TAA	T	234.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=26.08;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	2960969	rs17881253	TTATTAA	T	1117.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	2982817	rs1539792	C	A	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	3072052	rs202209077	A	AT	300.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-1.694;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:35,26:0.43:61
chr18	3075503	rs10667835	C	CAAA	16260.73	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr18	3075712	rs2298539	C	A	916.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:116,50:0.30:166
chr18	3075746	rs1143657	G	A	611.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr18	3075778	rs2298537	A	C	214.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr18	3084007	rs16944397	A	G	1128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=0.263;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:168,75:0.31:243
chr18	3085191	rs148266515	AT	A	780.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:20,49:0.71:69
chr18	3089522	rs948298	G	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr18	3089611	rs17183833	A	G	709.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=4.633;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=1.665;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:154,54:0.26:208
chr18	3094377	rs36091956	GA	G	383.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.864;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.84;ReadPosRankSum=-0.063;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:8,31:0.79:39
chr18	3100429	rs7232329	G	A	4199.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:75,187:0.71:262
chr18	3112231	rs8096379	G	C	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:33,42:0.56:75
chr18	3112568	rs8097874	C	A	557.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	3116539	rs17177451	A	G	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=4.190;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.37;ReadPosRankSum=-0.429;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:105,50:0.32:155
chr18	3120060	rs6506068	G	A	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	3129131	rs8089599	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	3131593	rs34489383	CT	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-2.228;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr18	3134953	rs200029902	A	ATT	475.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:3,20:0.87:23
chr18	3155116	.	C	A	689.77	.	AC=1;AF=0.500;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr18	3164385	rs11659820	C	T	3505.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:79,162:0.67:241
chr18	3169070	rs140809501	C	CAAAAAA	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.262;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.976;QD=6.91;ReadPosRankSum=1.941;SOR=0.178;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr18	3173873	rs10153407	G	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.680;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.21;ReadPosRankSum=-0.193;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr18	3173964	rs2230163	G	A	669.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.580;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=8.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=-0.774;SOR=1.403;set=HC	GT:AD:AF:DP	0/1:139,43:0.24:182
chr18	3174056	rs10153428	C	A	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:316,164:0.34:480
chr18	3174076	rs35188311	A	AAC	5463.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=578;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=5.561;QD=10.06;ReadPosRankSum=0.232;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:348,195:0.36:543
chr18	3176040	rs8099021	C	G	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	3188613	rs113174034	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:57,55:0.49:112
chr18	3188630	rs140742792	AG	A	1296.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=1.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=-0.499;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:88,84:0.49:172
chr18	3188642	rs111506648	A	G	3877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.58;ReadPosRankSum=-0.817;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:90,108:0.55:198
chr18	3188664	rs36223371	TACACAC	T,TACAC	7724.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.213;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.98;MQRankSum=-0.104;QD=31.53;ReadPosRankSum=-1.596;SOR=1.036;set=HC	GT:AD:AF:DP	1/2:4,139,102:0.57,0.42:245
chr18	3188715	rs73375192	T	C	3839.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	0/1:202,190:0.48:392
chr18	3188857	rs2230166	A	G	4040.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=1.275;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=0.449;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:419,132:0.24:551
chr18	3188873	rs2230165	G	A	4602.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.611;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.13;ReadPosRankSum=1.945;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:417,149:0.26:566
chr18	3188976	rs1962519	A	G	7627.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:142,336:0.70:478
chr18	3253543	rs1791105	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr18	3253569	rs6417016	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr18	3272744	rs7242012	A	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	3272798	rs6506097	AG	TA	2356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	3272855	rs6506099	C	T	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr18	3272874	rs7407072	T	A	5507.73	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr18	3273153	rs7407045	C	T	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr18	3277466	rs6506100	TG	CA	13204.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr18	3277691	rs6506102	A	T	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	3447871	rs151472	T	C	7373.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr18	3534175	rs2072389	G	A	7096.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:158,329:0.68:487
chr18	3534692	rs55685193	C	CT	94.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.06;ReadPosRankSum=-0.605;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chr18	3580485	rs2240900	G	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:36,18:0.33:54
chr18	3580742	rs475528	A	G	2694.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:87,130:0.60:217
chr18	3582272	rs11662259	A	C	1082.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:33,48:0.59:81
chr18	3656058	rs2270195	T	C	2333.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:233,126:0.35:359
chr18	3742572	rs3745050	C	G	729.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.647;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.250;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:125,48:0.28:173
chr18	3814361	.	AT	A	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=1.169;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chr18	5145609	rs1395063	G	T	2019.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr18	5196888	rs7240473	C	G	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	5196981	rs292285	G	A	4045.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	5196992	rs292286	T	C	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	5197067	.	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=3.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-2.831;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:117,63:0.35:180
chr18	5197170	rs6506291	G	A	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.410;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-0.515;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr18	5232843	rs9963665	C	T	1388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=4.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.053;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:253,91:0.26:344
chr18	5233105	rs3887348	C	G	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr18	5238208	rs1061666	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:94,43:0.31:137
chr18	5238229	rs11363931	TG	T	1859.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:149,64:0.30:213
chr18	5238442	rs11795	G	C	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:96,44:0.31:140
chr18	5238507	rs79570056	G	C	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:35,9:0.20:44
chr18	5290853	rs73372042	G	A	6986.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:125,319:0.72:444
chr18	5292030	rs620652	A	G	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr18	5292207	rs11327444	CA	C	334.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=4.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-0.099;SOR=1.547;set=HC	GT:AD:AF:DP	0/1:46,33:0.42:79
chr18	5396976	rs11661371	C	T	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chr18	5407839	rs2874686	C	T	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr18	5407911	rs2322093	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	5410574	rs3817466	A	G	7998.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr18	5420021	rs3752061	A	G	1151.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	5423631	rs12607210	A	T	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	5433570	rs2272130	A	C	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr18	5433722	rs3931700	C	T	2093.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	5437961	rs5822861	T	TC	9662.73	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr18	5437967	rs2322094	C	T	1414.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:187,82:0.30:269
chr18	5577258	rs11876037	T	C	940.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:24,41:0.63:65
chr18	5630531	rs4083186	G	A	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	5630676	rs56114101	G	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,5:0.38:13
chr18	5890571	rs7506026	T	C	544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=-0.070;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:53,32:0.38:85
chr18	5890777	rs146496912	T	A	1726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.218;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-0.630;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:29,82:0.74:111
chr18	5891637	rs28656885	C	A	1544.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.831;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=3.432;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=1.160;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:223,90:0.29:313
chr18	5956472	rs3737356	A	T	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:97,59:0.38:156
chr18	5960044	rs199756387	CAT	C	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:44,21:0.32:65
chr18	5960165	rs505559	G	A	2201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=3.587;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.095;QD=6.35;ReadPosRankSum=-0.431;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:220,127:0.37:347
chr18	6032282	.	TAA	T	228.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.497;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.328;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:9,11:0.55:20
chr18	6032384	.	T	TAC	41	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=2;MGOF=31;MMLQ=15;MQ=55.22;NF=0;NR=4;PP=41;QD=11.0;SC=TGAAATATGTTACACACACAC;SbPval=1.0;Source=Platypus;TC=8;TCF=1;TCR=7;TR=4;WE=6032392;WS=6032374;set=Platypus	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	6046717	rs7234770	T	C	5364.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr18	6302059	rs7241792	C	T	3309.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:99,155:0.61:254
chr18	6302077	rs7241798	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:86,118:0.58:204
chr18	6511473	rs4798453	C	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	6511669	rs4798454	T	G	2774.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr18	6588929	rs8094425	A	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.37;ReadPosRankSum=0.480;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:157,60:0.28:217
chr18	6730016	rs57509765	G	C	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	6837446	rs2303977	G	A	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.62;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	6870524	rs62082833	T	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	6873354	rs2282522	G	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.757;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.829;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-1.219;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:35,8:0.19:43
chr18	6889973	rs4239328	A	G	6592.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:142,310:0.69:452
chr18	6890434	rs1116757	A	G	3010.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.560;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.14;ReadPosRankSum=-0.947;SOR=0.772;set=HC	GT:AD:AF:DP	0/1:99,149:0.60:248
chr18	6890591	rs1116756	C	T	606.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:12,27:0.69:39
chr18	6896450	rs11081282	C	T	1530.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:65,70:0.52:135
chr18	6898415	rs12185460	C	T	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,41:0.46:89
chr18	6912004	rs1346931	G	A	12398.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr18	6912143	rs1056408	A	C	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	6927348	rs2282629	G	A	5974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.394;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=1.623;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.39;ReadPosRankSum=2.082;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:95,150:0.61:245
chr18	6927352	rs2282630	TG	CA	6071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.012;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.19;ReadPosRankSum=2.167;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:99,152:0.61:251
chr18	6928138	rs4798516	A	G	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.161;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.31;ReadPosRankSum=-0.467;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:45,23:0.34:68
chr18	6928180	rs4797265	G	T	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.031;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=1.175;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:56,29:0.34:85
chr18	6928257	rs4798517	C	T	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.439;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.961;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=-2.577;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:40,25:0.38:65
chr18	6928291	rs4797266	T	C	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.506;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=-0.866;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:36,10:0.22:46
chr18	6928338	rs4798518	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=3.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.61;ReadPosRankSum=2.022;SOR=1.398;set=HC	GT:AD:AF:DP	0/1:63,17:0.21:80
chr18	6928422	rs4797267	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=1.728;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:132,47:0.26:179
chr18	6928547	rs4797268	T	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr18	6942295	rs733918	T	C	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=0.659;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:32,12:0.27:44
chr18	6943264	rs2016639	G	A	2934.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:77,132:0.63:209
chr18	6947013	rs489023	C	T	825.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	6947091	.	T	C	352.77	.	AC=1;AF=0.500;AN=2;DP=96;set=Intersection	GT:AD:AF:DP	0/1:69,26:0.27:95
chr18	6947143	rs2155697	A	C	879.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:104,51:0.33:155
chr18	6947362	rs12966847	C	G	170.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:38,12:0.24:50
chr18	6955357	rs200864652	T	G	3492.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:78,160:0.67:238
chr18	6956393	rs11875257	T	C	2143.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr18	6956415	rs16950875	T	C	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:44,91:0.67:135
chr18	6956504	rs11270496	ACAGCTCCAGCTC	A	3956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.050;ClippingRankSum=0.000;DB;DP=473;ExcessHet=3.0103;FS=0.597;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=2.882;QD=8.79;ReadPosRankSum=0.611;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:330,120:0.27:450
chr18	6977719	rs10164200	A	G	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,43:0.70:61
chr18	6977844	rs671871	A	G	2233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.23;ReadPosRankSum=0.525;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:52,105:0.67:157
chr18	6977966	rs672721	T	C	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr18	6980457	rs693360	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,40:0.36:110
chr18	6980523	rs607230	T	C	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:97,40:0.29:137
chr18	6982443	rs538815	C	T	748.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:105,44:0.30:149
chr18	6985270	rs11664063	C	T	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:102,40:0.28:142
chr18	6985468	rs11660907	A	C	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:137,72:0.34:209
chr18	6985499	rs11664115	C	T	3360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=-0.880;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:165,94:0.36:259
chr18	6985506	rs616722	T	C	3483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.267;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:176,102:0.37:278
chr18	6985655	rs617573	C	T	789.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr18	6986259	rs62081531	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:113,52:0.32:165
chr18	6993673	rs62081533	T	C	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=-0.359;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:126,59:0.32:185
chr18	6997818	rs12961939	A	C	4228.77	.	AC=1;AF=0.500;AN=2;DB;DP=836;set=Intersection	GT:AD:AF:DP	0/1:573,260:0.31:833
chr18	6999315	rs525394	A	G	2150.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	6999368	rs525231	C	T	9625.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.385;set=HC	GT:AD:AF:DP	1/1:0,211:1.00:211
chr18	6999377	rs525206	A	G	10371.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.82;SOR=1.298;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr18	6999628	rs625106	T	C	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	6999694	rs693754	T	C	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	6999963	rs12970643	G	A	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:86,162:0.65:248
chr18	7002412	rs5822937	G	GA	3869.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=0.000;DB;DP=347;ExcessHet=3.0103;FS=3.095;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.003;QD=12.17;ReadPosRankSum=-0.428;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:126,192:0.60:318
chr18	7008591	rs662471	T	C	8491.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr18	7010428	rs74825364	C	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.48;ReadPosRankSum=-1.495;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr18	7011413	rs619106	G	A	1246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=3.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.019;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:169,77:0.31:246
chr18	7011959	rs496865	T	A	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chr18	7012123	rs9946794	A	G	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr18	7015714	rs603258	T	C	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:21,36:0.63:57
chr18	7016794	rs35419086	TC	T	489.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chr18	7017322	rs539713	A	G	2308.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:53,106:0.67:159
chr18	7023371	rs684634	A	G	3364.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:66,158:0.71:224
chr18	7024345	rs548577	C	T	1587.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:25,72:0.74:97
chr18	7026187	rs510991	C	T	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.18;ReadPosRankSum=-0.097;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:30,45:0.60:75
chr18	7031986	rs113133818	T	TA	384.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:10,23:0.70:33
chr18	7033037	rs621993	G	A	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:56,121:0.68:177
chr18	7033173	rs113773518	GA	G	2055.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:42,62:0.60:104
chr18	7033235	rs4797278	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:23,31:0.57:54
chr18	7033255	rs628540	A	G	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chr18	7034448	rs566825	G	A	1276.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:46,58:0.56:104
chr18	7034464	rs674733	T	A	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:54,78:0.59:132
chr18	7034508	rs566655	T	G	3378.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:111,156:0.58:267
chr18	7035915	rs677136	A	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,93:0.58:159
chr18	7037866	rs647595	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	7042402	rs648161	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.736;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.046;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-0.214;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr18	7080135	rs16951199	A	C	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:13,15:0.54:28
chr18	7117623	rs334406	G	C	6569.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr18	7117782	rs334407	A	G	4551.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	7117880	rs36201812	CCCCGCCCCGT	C	1603.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	7888088	rs74903011	G	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:59,90:0.60:149
chr18	7946963	rs9962439	C	G	1088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.75;ReadPosRankSum=0.655;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:161,68:0.30:229
chr18	7947184	rs11661715	A	G	481.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chr18	8088969	rs488952	G	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr18	8089027	rs658110	G	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	8244282	rs60751184	C	CAA	571.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.320;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=8.93;ReadPosRankSum=-1.207;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:22,42:0.66:64
chr18	8318941	rs139710183	C	G	575.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr18	8343530	rs2279074	G	A	3334.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr18	8379046	rs3826631	A	G	605.98	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.295;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.25;ReadPosRankSum=-0.667;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:3,21:0.88:24
chr18	8379048	rs9789240	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.72;ReadPosRankSum=-1.050;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr18	8379089	rs8082894	T	A	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.431;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.20;ReadPosRankSum=-0.150;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:25,44:0.64:69
chr18	8379095	rs3819095	G	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.46;SOR=2.554;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	8380473	rs657374	T	A	3634.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	8384848	rs586931	A	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:4,6:0.60:10
chr18	8387058	rs664201	T	G	10662.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.61;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,239:1.00:239
chr18	8387065	rs594742	C	T	10680.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	8387195	rs593978	G	A	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	8387219	rs593950	G	C	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	8545593	rs7236554	A	G	5568.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:78,135:0.63:213
chr18	8545617	rs7234996	G	A	7915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.893;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=6.008;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.02;ReadPosRankSum=-1.906;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:100,193:0.66:293
chr18	8545622	rs7236681	A	G	8081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=4.807;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=-0.792;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:110,208:0.65:318
chr18	8545736	rs7236864	A	G	9541.77	.	AC=1;AF=0.500;AN=2;DB;DP=668;set=Intersection	GT:AD:AF:DP	0/1:223,443:0.67:666
chr18	8545785	rs7236891	A	G	7924.77	.	AC=1;AF=0.500;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	0/1:219,357:0.62:576
chr18	8545823	rs7241117	T	C	5165.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:151,242:0.62:393
chr18	8545859	rs7237030	A	G	3861.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:111,166:0.60:277
chr18	8705583	.	ACGCCGC	A,ACGCCGCCGCCGCCGCCGC	1905.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=98;set=Intersection	GT:AF:DP	1/2:0.23,0.76:74
chr18	8705679	rs8089706	C	T	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr18	8705871	rs142882599	T	G	2845.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	8706143	rs11661625	C	T	5057.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	8706186	rs11661629	C	T	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:105,247:0.70:352
chr18	8783835	rs35739383	T	C	7525.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr18	8784370	rs918272	A	G	9406.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr18	8786117	.	C	CCCCA	920.73	.	AC=1;AF=0.500;AN=2;DP=129;set=Intersection	GT:AD:AF:DP	0/1:50,32:0.39:82
chr18	8793236	rs556991	T	C	4642.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	8806815	rs11877424	A	G	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:28,66:0.70:94
chr18	8809418	rs10583994	TCA	T	4971.73	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:82,145:0.64:227
chr18	8809445	rs632423	G	C	3556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=-0.826;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:94,169:0.64:263
chr18	8821301	rs656602	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:24,20:0.45:44
chr18	8821556	rs629142	G	T	305.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chr18	8825946	rs72942342	G	A	2359.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:236,130:0.36:366
chr18	8826083	rs3744977	G	C	7406.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr18	9105108	rs1396740	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:58,18:0.24:76
chr18	9117867	rs906807	T	C	447.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.72;ReadPosRankSum=1.463;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:33,25:0.43:58
chr18	9182329	rs149819427	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.17;ReadPosRankSum=-0.431;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,3:0.30:10
chr18	9182332	rs60039834	C	CTTCAGGTAGGTT	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.854;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=3.041;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.90;ReadPosRankSum=0.593;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chr18	9255982	rs4798791	A	G	3189.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.932;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	9512985	rs1813100	G	A	6029.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr18	9522606	rs329007	G	A	5307.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr18	9577352	rs329000	C	T	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	9614096	rs71360847	C	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	9708279	rs28364845	A	G	97.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.51;ReadPosRankSum=-1.160;SOR=0.100;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chr18	9708582	rs62078920	C	T	1160.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:72,60:0.45:132
chr18	9775167	.	A	G	892.77	.	AC=1;AF=0.500;AN=2;DP=152;set=Intersection	GT:AD:AF:DP	0/1:104,48:0.32:152
chr18	9775362	rs149779563	C	T	1125.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:116,60:0.34:176
chr18	9859134	rs10695443	A	AAATATT	3782.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr18	9886567	rs62078799	T	G	941.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=1.505;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:42,49:0.54:91
chr18	9886568	rs112324257	TTATG	T	923.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.051;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.000;QD=9.83;ReadPosRankSum=1.585;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:45,49:0.52:94
chr18	9886890	rs601874	A	G	6177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=1277;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=2.354;QD=4.86;ReadPosRankSum=0.411;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:893,377:0.30:1270
chr18	9887394	rs2240910	C	T	18727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.533;ClippingRankSum=0.000;DB;DP=1170;ExcessHet=3.0103;FS=2.041;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=2.764;QD=16.20;ReadPosRankSum=-1.614;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:298,858:0.74:1156
chr18	9887497	rs11081510	G	A	30694.77	.	AC=1;AF=0.500;AN=2;DB;DP=1225;set=Intersection	GT:AD:AF:DP	0/1:340,881:0.72:1221
chr18	9887546	rs2240906	G	A	30372.77	.	AC=1;AF=0.500;AN=2;DB;DP=1382;set=Intersection	GT:AD:AF:DP	0/1:428,948:0.69:1376
chr18	9888069	rs2240905	A	G	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:48,82:0.63:130
chr18	9954233	rs151289099	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.413;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=14.652;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=3.107;QD=1.09;ReadPosRankSum=-0.436;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:58,15:0.21:73
chr18	10454960	rs28769876	C	G	6192.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr18	10455077	rs28379930	A	G	875.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.69;ReadPosRankSum=0.043;SOR=0.522;set=HC	GT:AD:AF:DP	0/1:104,50:0.32:154
chr18	10455133	rs28484275	C	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,17:0.27:63
chr18	10468453	rs539412	C	T	751.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:58,39:0.40:97
chr18	10677880	rs5823112	GA	G	338.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	10680104	rs1944383	C	T	1162.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	10680132	rs688237	C	T	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.81;SOR=1.785;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	10680142	rs688222	T	A	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.48;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	10680163	rs487037	G	A	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:1,98:0.99:99
chr18	10698010	rs6146217	C	CGGATGCATTTGTGAACAATTACTGA	578.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr18	10701898	rs62095568	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chr18	10704619	rs4796901	C	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr18	10705744	rs7227022	G	A	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:100,217:0.68:317
chr18	10714679	rs9962475	T	A	1550.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:26,71:0.73:97
chr18	10731665	rs5823116	A	AT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.87;ReadPosRankSum=1.317;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:11,7:0.39:18
chr18	10736476	rs35790059	G	GT	684.73	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:76,28:0.27:104
chr18	10736515	rs12455888	T	G	5790.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr18	10741011	rs5024299	G	A	5899.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr18	10743986	rs7233917	C	T	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr18	10744108	rs8093389	G	A	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:150,68:0.31:218
chr18	10748603	rs8096037	A	T	971.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:105,53:0.34:158
chr18	10757888	rs7407954	G	A	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr18	10758023	rs7407105	G	A	4715.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr18	10758284	rs79054145	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr18	10759935	rs2865119	A	G	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr18	10759961	rs2865118	G	A	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr18	10762962	rs7241380	G	A	5672.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr18	10763007	rs7227167	T	C	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr18	10763132	rs7507093	C	T	3176.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:92,146:0.61:238
chr18	10763218	rs2865131	T	C	2185.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr18	10784733	rs3830641	GA	G	1133.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	10785070	rs12604151	A	C	900.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	10787047	rs6505592	G	A	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr18	10787199	rs11468237	GAA	G	242.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=2.422;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:38,14:0.27:52
chr18	10789014	rs2870106	G	A	2553.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	10795041	rs6505594	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.767;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.20;ReadPosRankSum=-1.525;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:77,35:0.31:112
chr18	10797303	rs35610200	G	A	619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.711;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQRankSum=-0.529;QD=12.15;ReadPosRankSum=0.365;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr18	10797308	rs36081769	G	A	634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=-0.631;QD=11.14;ReadPosRankSum=1.025;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:38,19:0.33:57
chr18	10797338	rs145681764	T	TATC	1279.73	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:59,35:0.37:94
chr18	10797362	rs7407224	T	G	2467.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:53,109:0.67:162
chr18	10797567	rs56112279	A	G	484.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.390;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=1.648;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.353;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:104,35:0.25:139
chr18	10979655	rs145948919	T	G	1146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.017;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:192,79:0.29:271
chr18	11609903	rs8087561	CA	GG	27131.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr18	11619799	rs112261054	ATGT	A	9946.73	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr18	11752943	rs1895689	C	A	3596.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.15;QD=25.88;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	11753067	rs5823172	TG	T	1056.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	11753716	rs8095592	G	A	3063.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	11754034	rs72865259	T	C	2250.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	11824879	rs200508915	C	CT	2671.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.330;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=13.70;ReadPosRankSum=1.536;SOR=0.875;set=HC	GT:AD:AF:DP	0/1:32,163:0.84:195
chr18	11851480	rs16976750	C	A	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,81:0.99:82
chr18	11864707	rs4315401	A	G	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	11867297	rs2855646	C	T	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	11872174	rs2855639	G	T	76.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	11872516	rs2071140	T	C	281.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	11884670	rs643652	C	G	986.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,42:0.78:54
chr18	11999038	rs45442994	G	A	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:182,85:0.32:267
chr18	12012457	rs635370	A	C	1141.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.83;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	12012457	.	ACCGTGGTCTA	CCCGTGGTCTA,CCCGTGGTCTC	302	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.18;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=6;MMLQ=23;MQ=60.0;NF=5,3;NR=26,10;PP=302,195;QD=10.8635875015;SC=CCTCGTGTCAACCGTGGTCTA;SbPval=0.56;Source=Platypus;TC=31;TCF=5;TCR=26;TR=31,13;WE=12012475;WS=12012447;set=Platypus	GT:AF:DP	0/1:1.00:31
chr18	12012467	rs16976956	A	C	293.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.261;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.022;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.79;ReadPosRankSum=2.562;SOR=0.236;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr18	12014220	rs45512594	G	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:127,48:0.27:175
chr18	12014411	rs643107	T	G	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr18	12027941	rs45446291	AT	A	1439.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr18	12057195	rs9959517	A	G	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	12057389	rs9959781	C	G	30636.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,695:1.00:695
chr18	12057403	rs9959774	A	G	31040.77	.	AC=2;AF=1.00;AN=2;DB;DP=714;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr18	12057809	rs9960429	G	C	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	12067762	rs7506731	C	T	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr18	12067777	rs6505712	T	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr18	12067919	rs12966234	G	A	8959.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.437;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr18	12068078	rs34203217	G	T	6619.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:103,282:0.73:385
chr18	12076504	rs12966109	A	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr18	12076554	rs200141686	CGCCGCCGCA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-1.579;QD=17.39;ReadPosRankSum=1.579;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:3,4:0.57:7
chr18	12094006	rs9964971	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	12096249	rs1986751	G	T	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.728;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	12097547	rs4796945	A	G	1992.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr18	12099654	rs6505715	T	C	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	12115002	rs9959641	A	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	12115310	rs8091585	C	T	1431.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	12115339	rs8091463	A	G	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	12115509	rs4519391	G	A	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	12124152	rs11873244	C	G	931.73	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr18	12125657	rs7243248	G	A	6079.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr18	12126407	rs9303759	T	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:1,34:0.97:35
chr18	12254562	rs71369912	C	CCCGCGCACACACCCAT	5730.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.112;ClippingRankSum=0.000;DB;DP=1623;ExcessHet=3.0103;FS=3.754;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.633;QD=4.55;ReadPosRankSum=3.192;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:915,344:0.27:1259
chr18	12254785	rs11873135	G	C	2249.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:36,105:0.74:141
chr18	12308243	rs8087840	T	A	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	12308243	.	TGC	AGT	755	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=1;HapScore=1;MGOF=2;MMLQ=20;MQ=60.0;NF=18;NR=8;PP=755;QD=31.0949182639;SC=GGCCCGCAGTTGCCGCTGTCG;SbPval=0.55;Source=Platypus;TC=26;TCF=18;TCR=8;TR=26;WE=12308253;WS=12308233;set=Platypus	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	12308245	rs8086821	C	T	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	12308377	rs8086993	C	A	538.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	12348285	rs11553521	T	C	6791.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr18	12351342	rs11080572	C	T	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	12358997	rs7407640	A	G	4888.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr18	12359920	rs8097342	G	A	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	12363950	rs2298542	C	T	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	12407916	rs12967213	G	T	169.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.22;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	12421442	rs3906620	T	A	818.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	12429313	rs3760550	C	T	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	12453005	rs499013	A	G	1703.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	12512385	rs139581657	CAA	C,CA	5088.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.081;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.000;QD=23.13;ReadPosRankSum=-0.901;SOR=1.529;set=HC	GT:AD:AF:DP	1/2:2,180,38:0.82,0.17:220
chr18	12512559	rs550613	C	A	6794.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr18	12512574	rs567709	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr18	12546608	rs35057526	GA	G	444.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	12634934	rs35302137	CA	C	382.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=4.813;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.066;QD=10.63;ReadPosRankSum=-1.858;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr18	12634986	rs12454931	T	G	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	12657431	rs34472716	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=2.476;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	12658191	rs3902981	T	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	12658600	rs1062235	A	G	6634.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr18	12662148	rs1129214	G	A	2798.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr18	12662190	rs5823232	G	GA,GAA	901.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.312;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=2.012;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.17;MQRankSum=0.369;QD=18.03;ReadPosRankSum=-0.627;SOR=1.329;set=HC	GT:AD:AF:DP	1/2:4,34,12:0.68,0.24:50
chr18	12678486	rs12966424	A	G	4185.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr18	12695415	rs34277169	C	A	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	12700918	rs137976891	CATAT	C	4175.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	12703067	rs3809916	A	G	6081.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr18	12703192	rs3809919	C	T	7658.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr18	12718593	rs2302768	A	G	5712.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	12785944	rs17656120	A	G	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.664;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=2.482;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:247,107:0.30:354
chr18	12786032	rs17656142	G	A	681.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:86,35:0.29:121
chr18	12786059	rs8092305	G	A	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,20:0.27:74
chr18	12819041	rs7245206	C	T	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:7,13:0.65:20
chr18	12840879	rs17657106	T	C	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=2.932;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.656;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:267,129:0.33:396
chr18	12951738	rs1474043	G	A	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:38,42:0.53:80
chr18	12955439	rs11286163	CT	C	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=0.383;QD=7.99;ReadPosRankSum=0.792;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr18	12963146	rs35999381	AT	A	1344.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.748;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=0.733;QD=10.84;ReadPosRankSum=1.293;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:41,83:0.67:124
chr18	12979028	rs56263236	T	C	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,18:0.82:22
chr18	12982760	rs12955780	G	A	1341.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,55:0.65:84
chr18	12984144	rs6505776	C	A	2422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.00;ReadPosRankSum=-0.833;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:58,115:0.66:173
chr18	12986802	rs113784266	G	GT	768.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.230;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.68;ReadPosRankSum=0.584;SOR=0.543;set=HC	GT:AD:AF:DP	0/1:25,47:0.65:72
chr18	13001512	rs4499304	G	C	1475.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:44,70:0.61:114
chr18	13001523	rs11080618	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:48,79:0.62:127
chr18	13008369	rs6505777	A	G	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,10:0.59:17
chr18	13040084	rs7229869	A	C	487.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.171;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.73;ReadPosRankSum=0.359;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chr18	13049948	rs11441028	G	GA	780.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,39:0.67:58
chr18	13056333	rs2282541	C	T	6841.77	.	AC=1;AF=0.500;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	0/1:166,314:0.65:480
chr18	13068132	rs578208	T	C	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:49,97:0.66:146
chr18	13069782	rs6505780	C	T	3825.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=6.196;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.12;ReadPosRankSum=0.360;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:86,185:0.68:271
chr18	13072979	rs1787013	T	C	4336.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:85,174:0.67:259
chr18	13087789	rs472992	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:14,15:0.52:29
chr18	13087815	rs527839	G	A	164.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr18	13088673	rs498685	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr18	13095401	rs476191	A	T	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:8,29:0.78:37
chr18	13095609	rs474337	T	C	4559.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:83,210:0.72:293
chr18	13096436	rs556371	T	C	858.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr18	13099632	.	G	T	937.77	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:21,44:0.68:65
chr18	13116432	rs1786263	G	T	3407.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:123,162:0.57:285
chr18	13460037	rs59728040	G	A	3139.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.871;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	13460078	rs59719495	T	C	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr18	13643179	rs11080665	C	A	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:48,32:0.40:80
chr18	13666768	rs1149356	A	G	1036.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:154,60:0.28:214
chr18	13671976	.	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.597;ClippingRankSum=0.000;DP=180;ExcessHet=3.0103;FS=6.678;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.127;QD=0.29;ReadPosRankSum=-0.439;SOR=1.519;set=HC	GT:AD:AF:DP	0/1:112,21:0.16:133
chr18	13731407	rs61281036	C	CA	134.82	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.23;ReadPosRankSum=-1.562;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,9:0.75:12
chr18	13740038	rs45585137	T	C	397.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:59,23:0.28:82
chr18	13742365	rs4239313	A	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	13759816	rs4797812	T	C	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	13759820	rs4797813	G	T	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	13762011	rs4461147	C	A	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	14105016	rs61609068	C	A	3442.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:129,157:0.55:286
chr18	14105770	rs61730995	T	C	4160.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:95,183:0.66:278
chr18	14105853	rs8094412	C	A	1050.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr18	14105923	rs2159940	T	C	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	14106039	rs62086326	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr18	14156143	rs149108958	A	G	473.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.37;QD=24.94;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	14156241	rs115684852	A	T	3007.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.99;MQRankSum=-2.487;QD=24.65;ReadPosRankSum=-0.855;SOR=0.950;set=HC	GT:AD:AF:DP	1/1:2,120:0.98:122
chr18	14157291	rs9959262	A	T	5246.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:131,236:0.64:367
chr18	14157373	rs7505684	T	A	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	14179603	rs4797872	A	G	293.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:6,14:0.70:20
chr18	14378446	rs12604202	A	G	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.797;QD=4.22;ReadPosRankSum=0.508;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:44,19:0.30:63
chr18	14378533	rs2137484	G	C	527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=-3.305;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:97,36:0.27:133
chr18	14378579	rs12604237	C	T	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:105,37:0.26:142
chr18	14542931	rs45554841	C	T	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:132,90:0.41:222
chr18	14542949	rs9807555	T	C	3184.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:146,92:0.39:238
chr18	14542979	rs200806970	A	G	982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=16.957;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-4.900;QD=3.45;ReadPosRankSum=-1.819;SOR=1.079;set=HC	GT:AD:AF:DP	0/1:214,71:0.25:285
chr18	14543057	rs9807633	T	G	8107.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:144,234:0.62:378
chr18	14543098	rs11873462	C	T	6677.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:107,188:0.64:295
chr18	14543139	rs28535987	T	C	7201.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr18	14752768	rs45620343	G	A	1495.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,60:0.66:91
chr18	14752957	rs12457503	G	A	5112.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:102,236:0.70:338
chr18	14779833	.	T	TCCA	58	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=1;HapScore=4;MGOF=48;MMLQ=28;MQ=55.15;NF=2;NR=0;PP=58;QD=66.9871282029;SC=GTGGTTGTTATTCAATAGAAT;SbPval=1.0;Source=Platypus;TC=9;TCF=9;TCR=0;TR=2;WE=14779842;WS=14779823;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr18	14779834	.	T	C	99	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=1;HapScore=4;MGOF=48;MMLQ=28;MQ=55.15;NF=2;NR=0;PP=99;QD=66.8856062736;SC=TGGTTGTTATTCAATAGAATA;SbPval=1.0;Source=Platypus;TC=9;TCF=9;TCR=0;TR=2;WE=14779842;WS=14779823;set=Platypus	GT:AD:AF:DP	1/0:7,2:0.22:9
chr18	14780064	rs78339886	A	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=3.998;MLEAC=1;MLEAF=0.500;MQ=59.24;MQRankSum=-3.361;QD=2.27;ReadPosRankSum=1.477;SOR=1.668;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr18	14780082	rs11080793	G	A	962.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.86;QD=30.09;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	14780082	.	GC	AC,AT	339	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=28;MMLQ=26;MQ=56.23;NF=13,3;NR=21,7;PP=339,73;QD=10.9932709573;SC=ATGTGAAAATGCAAAATCAGA;SbPval=0.55;Source=Platypus;TC=34;TCF=13;TCR=21;TR=34,10;WE=14780091;WS=14780072;set=Platypus	GT:AF:DP	0/1:1.00:34
chr18	14780083	.	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.172;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-2.890;QD=4.41;ReadPosRankSum=0.852;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr18	14780108	.	C	T	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=5.647;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-4.008;QD=5.56;ReadPosRankSum=-0.635;SOR=2.437;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr18	14780116	rs79644245	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.018;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.12;MQRankSum=-3.151;QD=2.93;ReadPosRankSum=-0.665;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:15,3:0.17:18
chr18	14830262	.	C	T	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-5.383;QD=1.02;ReadPosRankSum=-1.830;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:34,7:0.17:41
chr18	14848820	rs4090319	C	T	3628.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.60;QD=25.74;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr18	14852335	rs12386087	C	A	4910.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	15004191	rs34229476	G	A	2774.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:46,114:0.71:160
chr18	15004661	rs11665121	C	T	336.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:40,20:0.33:60
chr18	15004728	rs11080802	A	C	71.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:11,5:0.31:16
chr18	15005736	rs4890719	G	A	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	15005785	rs4890720	C	T	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:38,14:0.27:52
chr18	18534702	rs2663699	T	C	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:126,40:0.24:166
chr18	18546896	rs35881519	T	G	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.866;ClippingRankSum=0.000;DB;DP=357;ExcessHet=3.0103;FS=0.925;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.886;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:259,96:0.27:355
chr18	18559675	rs7237677	G	C	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.06;ReadPosRankSum=-0.183;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,3:0.25:12
chr18	18566889	rs201560676	A	T	3896.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:66,166:0.72:232
chr18	18588245	.	G	GA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.538;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:13,8:0.38:21
chr18	18623974	rs73959778	C	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr18	19065494	rs7234335	C	G	2104.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	19079537	rs8087553	A	G	1061.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	19079853	rs4800747	A	G	11122.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr18	19096838	rs11413472	G	GT	90.92	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.49;ReadPosRankSum=1.332;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr18	19100517	rs1395251	T	C	2509.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	19100758	rs34960489	A	ATCT	8480.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr18	19100854	rs9947441	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	19110466	rs35451929	TG	T	162.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	19115896	rs4800780	A	T	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	19119801	rs1818274	C	T	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	19119974	rs35031202	GAT	G	1894.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.289;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.524;MLEAC=1;MLEAF=0.500;MQ=60.89;MQRankSum=1.421;QD=18.58;ReadPosRankSum=-0.973;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:14,88:0.86:102
chr18	19119992	.	TAC	T	714	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=2;HapScore=2;MGOF=15;MMLQ=27;MQ=60.92;NF=5;NR=58;PP=714;QD=11.4444444444;SC=TATATATATATACACACATAT;SbPval=0.45;Source=Platypus;TC=71;TCF=5;TCR=66;TR=63;WE=19120001;WS=19119982;set=Platypus	GT:AD:AF:DP	0/1:8,63:0.89:71
chr18	19153494	rs973730	C	T	6468.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr18	19408950	rs9989532	C	T	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=26.15;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	19423963	rs3216119	GT	G	674.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	19780527	rs11352746	AC	A	7228.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr18	19996011	rs7227477	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:29,76:0.72:105
chr18	20555219	rs2336916	T	C	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	20564800	rs3052770	TTCA	T	767.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	20715656	rs113232639	G	A	285.78	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:3,13:0.81:16
chr18	20716014	rs139352344	GGGCGCCGGC	G	517.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr18	20950158	rs148939309	GA	G	430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=1.557;QD=5.82;ReadPosRankSum=-0.900;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:36,38:0.51:74
chr18	20953720	rs8099409	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:100,41:0.29:141
chr18	20964769	rs8094375	A	G	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr18	21017835	rs12967028	C	T	1888.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;ClippingRankSum=0.000;DB;DP=266;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.13;ReadPosRankSum=0.419;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:161,104:0.39:265
chr18	21017835	.	CT	TC	1375	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=3;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=37;NR=58;PP=1375;QD=15.0365039459;SC=TCGTCCCCTTCTCGGGGATCC;SbPval=0.68;Source=Platypus;TC=247;TCF=104;TCR=143;TR=95;WE=21017844;WS=21017825;set=Platypus	GT:AD:AF:DP	0/1:152,95:0.38:247
chr18	21017836	rs7226498	T	C	6825.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.25;ReadPosRankSum=-0.477;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:2,258:0.99:260
chr18	21033582	rs8086258	G	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr18	21043106	rs72884533	T	C	491.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr18	21046250	rs4800486	T	C	1513.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=3.839;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.64;ReadPosRankSum=-2.649;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:38,73:0.66:111
chr18	21046255	rs34308695	AT	A	2183.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:27,62:0.70:89
chr18	21055092	rs7235571	A	C	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	21059547	rs200137533	C	CT	700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.357;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=1.132;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=0.960;QD=11.12;ReadPosRankSum=-0.880;SOR=0.979;set=HC	GT:AD:AF:DP	0/1:21,42:0.67:63
chr18	21083738	rs303760	C	T	2701.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:170,136:0.44:306
chr18	21088081	rs1652381	T	C	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	21100240	rs1367083	C	T	3352.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:97,154:0.61:251
chr18	21103909	rs891387	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chr18	21107628	rs111369676	G	GTATTGTATTTCT	1861.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:38,39:0.51:77
chr18	21109250	rs1788825	T	C	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:70,99:0.59:169
chr18	21109269	rs1652375	T	C	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:64,84:0.57:148
chr18	21109466	rs1652376	G	T	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:32,42:0.57:74
chr18	21112206	rs1805084	C	T	3982.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:121,187:0.61:308
chr18	21113285	rs2510344	T	C	3799.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:108,174:0.62:282
chr18	21119291	rs6507720	A	G	2247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=4.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.28;ReadPosRankSum=-0.347;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:71,112:0.61:183
chr18	21119777	rs1140458	G	A	1161.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:32,52:0.62:84
chr18	21120035	rs7239575	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr18	21120381	.	TA	T	462.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.634;QD=2.53;ReadPosRankSum=0.609;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:116,67:0.37:183
chr18	21120444	rs1805082	T	C	6768.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:165,328:0.67:493
chr18	21123296	rs34563465	G	GA	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.541;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=1.81;ReadPosRankSum=-0.754;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr18	21123536	rs11299077	TA	T	229.86	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.639;QD=6.76;ReadPosRankSum=-1.067;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr18	21124907	rs3837910	A	ACC,ACCC	580.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=82;set=Intersection	GT:AF:DP	0/1:0.36:75
chr18	21124945	.	C	G	1564.77	.	AC=1;AF=0.500;AN=2;DP=173;set=Intersection	GT:AD:AF:DP	0/1:90,82:0.48:172
chr18	21127910	rs2435307	C	T	3203.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:76,142:0.65:218
chr18	21192261	rs1652366	G	T	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:36,65:0.64:101
chr18	21209988	rs11660305	G	A	264.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chr18	21293869	.	C	CT	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.072;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:76,18:0.19:94
chr18	21294117	rs34200895	TA	T	1905.73	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.32;QD=20.94;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	21338276	rs6507894	C	T	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr18	21338515	rs11308832	TC	T	1854.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	21393229	rs11420756	A	AT	462.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:3,27:0.90:30
chr18	21395358	rs2155841	G	C	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	21400005	rs7244406	A	C	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	21400028	rs6507956	G	T	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	21404334	rs1941521	A	G	3479.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr18	21413869	rs9962023	T	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	21414100	rs1109949	G	A	1601.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.15;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	21414110	rs1109950	G	A	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.54;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	21437721	rs867448	A	G	4738.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	21437931	rs867449	G	C	8422.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr18	21441717	rs12965685	C	T	6353.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr18	21495483	rs1541836	T	C	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	21496533	rs61751706	C	T	1995.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:162,104:0.39:266
chr18	21496681	.	G	C	1253.77	.	AC=1;AF=0.500;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:170,77:0.31:247
chr18	21511089	rs1154233	A	G	9416.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr18	21511172	rs1258107	G	C	3899.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	21526087	rs2288592	C	T	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	21529722	rs2241643	G	A	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	21531906	rs11873358	C	T	1112.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	21534365	rs11406615	T	TA	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=4.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.27;ReadPosRankSum=0.519;SOR=0.141;set=HC	GT:AD:AF:DP	0/1:16,20:0.56:36
chr18	21534701	rs1051149	C	A	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	21534701	.	CTC	ATT	1589	.	AC=2;AF=1.00;AN=2;BRF=0.02;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=28;MQ=60.0;NF=9;NR=28;PP=1589;QD=44.3910236449;SC=TCATTCTTCACTCAGGACACA;SbPval=0.53;Source=Platypus;TC=42;TCF=10;TCR=32;TR=37;WE=21534711;WS=21534691;set=Platypus	GT:AD:AF:DP	1/1:5,37:0.88:42
chr18	21534703	rs1051150	C	T	1822.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.74;SOR=2.362;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	21662816	rs2305024	A	C	3209.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr18	21693671	rs894931	G	A	7405.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr18	21694618	rs4800176	G	A	7917.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr18	21696599	rs28582690	A	C	168.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=1.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=-1.363;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chr18	21698540	rs8083625	C	T	1440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.378;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.64;ReadPosRankSum=-0.601;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:138,79:0.36:217
chr18	21698618	rs10537168	AT	A	342.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=3.960;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.885;QD=5.53;ReadPosRankSum=-1.152;SOR=0.333;set=HC	GT:AD:AF:DP	0/1:30,32:0.52:62
chr18	21703649	rs9956079	A	G	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	21705624	rs2306811	G	A	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr18	21706607	rs56130136	A	AT	282.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.703;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:84,34:0.29:118
chr18	21708999	rs3816822	G	A	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr18	21710321	rs12970083	C	T	5980.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	21714221	.	GTTTT	G	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519;ClippingRankSum=-0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.83;ReadPosRankSum=0.303;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chr18	21736933	rs1049683	T	G	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-0.577;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:21,36:0.63:57
chr18	21739725	rs1049684	T	C	1700.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:167,96:0.37:263
chr18	21751296	rs12455391	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr18	21758169	rs370187142	TA	T	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.66;ReadPosRankSum=-1.630;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:34,14:0.29:48
chr18	21759593	rs12604451	T	C	1254.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr18	21883552	rs1487377	G	A	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:55,67:0.55:122
chr18	21891975	rs2337961	A	G	2941.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:97,146:0.60:243
chr18	21894351	rs12966893	A	G	1572.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:30,70:0.70:100
chr18	21894409	rs12966456	C	T	648.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr18	21897189	rs34306542	A	G	2311.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:70,108:0.61:178
chr18	21898556	rs12955338	T	C	60.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.75;ReadPosRankSum=-1.383;SOR=1.518;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	21901628	rs34481824	T	C	2438.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:65,116:0.64:181
chr18	21912865	rs2848605	A	G	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	21938384	rs7226913	T	C	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	21938396	rs7226922	T	C	2285.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	21938413	rs45485003	G	A	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr18	21938658	rs7227401	T	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr18	21946572	rs656487	T	A	1449.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.30;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	22006601	rs45609839	G	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	22008913	rs582358	C	T	4102.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr18	22010421	rs9783924	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	22017752	rs1941814	C	A	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	22018129	rs1791254	A	C	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	22020543	rs677688	C	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr18	22642499	rs45453901	A	G	152.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr18	23598160	rs607404	A	T	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr18	23720254	rs79168724	C	G	365.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr18	23865851	rs12456749	C	T	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr18	23866482	rs8089000	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	23872235	rs12963653	A	G	5500.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	23875336	rs1382260	T	A	932.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	23901198	rs2276407	G	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr18	24039964	rs3835044	AT	A	1174.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr18	24127313	rs8083482	C	T	8607.77	.	AC=1;AF=0.500;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	0/1:199,384:0.66:583
chr18	24128222	rs143299522	TTCC	T	2531.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=3.161;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.000;QD=19.47;ReadPosRankSum=1.434;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:64,66:0.51:130
chr18	24442392	rs35248760	C	A	1164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.558;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.826;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=0.241;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:193,75:0.28:268
chr18	24445433	rs3875089	T	C	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr18	25532190	.	T	C	1614.77	.	AC=1;AF=0.500;AN=2;DP=120;set=Intersection	GT:AD:AF:DP	0/1:49,71:0.59:120
chr18	25562831	rs8092870	C	T	725.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	25565082	rs1220144	A	G	7671.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr18	25570228	rs1628684	G	C	7624.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr18	25572837	rs1662733	G	A	3716.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr18	25573308	rs1662734	C	T	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr18	25573622	rs2957286	G	C	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr18	25727760	.	G	GA	360.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.075;QD=1.21;ReadPosRankSum=0.147;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:234,65:0.22:299
chr18	27879067	rs78549380	A	G	250.78	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chr18	28598866	rs5823777	CTG	C	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.52;ReadPosRankSum=-2.029;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr18	28605715	rs202439	A	T	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-2.583;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr18	28611139	rs276936	A	C	4243.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.036;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.823;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.88;ReadPosRankSum=-0.591;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:1,163:0.99:164
chr18	28612054	.	T	C	448.77	.	AC=1;AF=0.500;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr18	28612229	rs2852003	G	T	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.018;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.940;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.58;ReadPosRankSum=-0.842;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:25,49:0.66:74
chr18	28622524	rs276924	C	T	1917.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:248,114:0.31:362
chr18	28659724	rs1658128	T	C	851.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	28662776	rs1790702	G	A	451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.271;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.582;QD=15.06;ReadPosRankSum=1.099;SOR=1.010;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chr18	28666526	rs35717505	T	TTAA	2604.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	28666826	rs17799745	T	C	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:12,8:0.40:20
chr18	28671212	rs1790683	T	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr18	28671381	rs34593516	GA	G	969.73	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr18	28672067	rs117812913	T	C	428.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr18	28673565	rs12954874	T	C	2164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.644;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.43;ReadPosRankSum=-0.502;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:270,129:0.32:399
chr18	28711519	rs1789072	C	T	4037.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	28712737	rs36112658	CA	C	265.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	28719674	rs1789043	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.90;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	28728384	rs2577067	C	T	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:13,37:0.74:50
chr18	28734749	rs2249810	A	G	4543.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:120,219:0.65:339
chr18	28737198	rs2246736	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr18	28737299	rs2118342	T	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:36,34:0.49:70
chr18	28898201	rs1834582	A	G	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr18	28898294	rs1426310	A	G	7425.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr18	28906460	rs57200666	TG	CA	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	28907096	rs765054	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	28908090	rs2303465	G	A	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr18	28913599	rs12967407	C	T	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr18	28913929	rs5823800	TTC	T	783.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	28916230	rs74277377	G	GAT	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	28916290	rs6506917	G	A	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	28923983	rs11660224	AT	CA	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	28935375	rs8099566	C	T	2205.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.76;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr18	28935375	.	CAACAA	TAACAA,TAACAG	461	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.12;FR=0.5000,0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=11,5;NR=47,23;PP=373,461;QD=7.03053814737;SC=ACTAAAAAACCAACAATGTGA;SbPval=0.54;Source=Platypus;TC=58;TCF=11;TCR=47;TR=58,28;WE=28935388;WS=28935365;set=Platypus	GT:AF:DP	0/1:1.00:58
chr18	28935380	rs112770022	A	G	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.56;ReadPosRankSum=0.231;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:28,29:0.51:57
chr18	28966518	rs1460597	G	C	729.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	28968371	rs16959856	G	A	8122.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,305:1.00:305
chr18	28968959	rs9956865	C	T	4003.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	28969008	rs16959863	C	T	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr18	28986333	rs4799570	A	C	5017.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	28993183	rs12960081	A	G	13400.77	.	AC=2;AF=1.00;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	1/1:0,517:1.00:517
chr18	28993501	rs7234288	C	A	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr18	29046398	rs2035042	G	A	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr18	29046754	rs372985435	T	G	1003.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:31,41:0.57:72
chr18	29049018	rs11660216	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:104,47:0.31:151
chr18	29055635	rs117661169	C	T	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:141,66:0.32:207
chr18	29055957	rs1380866	A	G	6062.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	29178513	rs36204272	G	C	5901.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.78;ReadPosRankSum=1.081;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:222,279:0.56:501
chr18	29205591	rs34683195	T	C	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:111,125:0.53:236
chr18	29237765	rs1449086	T	A	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	29237860	rs1449087	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:132,62:0.32:194
chr18	29238076	rs67738912	CA	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.368;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.202;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chr18	29264182	rs1449081	G	A	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	29419462	rs7226615	C	A	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chr18	29426649	rs76349894	A	G	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:99,43:0.30:142
chr18	29426868	rs682279	A	T	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	29432304	rs11081719	C	G	42.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chr18	29432332	rs7239629	G	A	70.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr18	29432367	rs3841748	AC	A	547.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr18	29432624	rs3737374	T	C	1721.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	29433787	rs74871921	T	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.52;ReadPosRankSum=-0.406;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr18	29435778	.	TA	T	682.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.658;QD=4.84;ReadPosRankSum=-0.469;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:68,73:0.52:141
chr18	29444811	rs2291239	A	G	1027.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr18	29450300	rs75554495	T	A	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr18	29450527	rs77278243	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:53,22:0.29:75
chr18	29454374	rs141789987	TAATA	T	395.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr18	29454728	rs77601127	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:46,28:0.38:74
chr18	29477697	rs74954001	TA	T	999.73	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:34,63:0.65:97
chr18	29481078	rs3833187	G	GT	249.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chr18	29487567	rs34176695	C	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:51,33:0.39:84
chr18	29489487	rs76484420	T	C	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr18	29493533	rs11659244	T	A	92.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.31;ReadPosRankSum=1.242;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr18	29496218	rs62093869	C	T	755.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.60;ReadPosRankSum=-0.118;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:24,36:0.60:60
chr18	29497573	rs6506948	A	G	4620.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.11;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr18	29598847	rs34097443	C	T	1564.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:111,76:0.41:187
chr18	29617255	rs9947278	T	G	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:37,68:0.65:105
chr18	29625524	rs113849815	C	CA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.61;ReadPosRankSum=0.385;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr18	29672676	rs114104374	G	T	3747.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:415,216:0.34:631
chr18	29672835	rs151315163	G	C	5344.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:179,259:0.59:438
chr18	29708981	rs684359	G	A	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	29771974	rs16962783	C	G	80.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	29775226	rs202010514	TACAC	T	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.31;ReadPosRankSum=2.522;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr18	29788357	rs28759083	A	G	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	29790376	rs9959058	C	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=7.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.14;ReadPosRankSum=0.394;SOR=2.459;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr18	29790376	.	CGC	TGT	685	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=1;HapScore=3;MGOF=1;MMLQ=28;MQ=60.0;NF=15;NR=1;PP=685;QD=46.1542421789;SC=ACTTATGCCTCGCGTAAAGAA;SbPval=0.91;Source=Platypus;TC=34;TCF=29;TCR=5;TR=16;WE=29790386;WS=29790366;set=Platypus	GT:AD:AF:DP	0/1:18,16:0.47:34
chr18	29790378	rs2241891	C	T	598.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=7.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.14;ReadPosRankSum=0.621;SOR=2.459;set=HC	GT:AD:AF:DP	0/1:16,17:0.52:33
chr18	29793526	rs335518	C	T	5281.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:132,244:0.65:376
chr18	29795076	rs173032	T	C	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr18	29795101	rs233223	T	C	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr18	29796831	.	TA	T	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=9.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.48;ReadPosRankSum=0.877;SOR=0.147;set=HC	GT:AD:AF:DP	0/1:59,20:0.25:79
chr18	29797958	rs680321	T	C	1599.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:140,83:0.37:223
chr18	29800119	rs673408	A	G	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr18	29847739	rs35950532	G	GT	243.73	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:9,13:0.59:22
chr18	29848436	rs3859366	G	A	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:37,52:0.58:89
chr18	29850007	rs16962953	G	A	217.80	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr18	29867091	rs16962974	G	A	1141.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:50,53:0.51:103
chr18	29867504	rs16962977	T	C	4069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.262;ClippingRankSum=0.000;DB;DP=284;ExcessHet=3.0103;FS=4.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.43;ReadPosRankSum=0.545;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:101,181:0.64:282
chr18	29972774	rs3786309	T	C	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr18	30093722	rs11081773	A	C	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:15,5:0.25:20
chr18	30275526	.	GA	G	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=6.628;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.958;QD=1.40;ReadPosRankSum=0.866;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:90,30:0.25:120
chr18	30349691	rs17851892	C	T	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:83,160:0.66:243
chr18	30351955	rs7234849	G	A	2415.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:87,113:0.56:200
chr18	30352057	rs200605696	GCGCCGGCC	G	10868.73	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.55;QD=43.30;SOR=1.428;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr18	30352114	rs71366355	C	G	1116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=9.859;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.643;QD=3.18;ReadPosRankSum=3.120;SOR=1.201;set=HC	GT:AD:AF:DP	0/1:265,86:0.25:351
chr18	30672631	rs1995096	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	30804756	rs466113	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr18	30846895	rs9965081	A	T	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	30908046	rs370402331	GATTTTTTTTTTTTTTTTTTTT	G	1843.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.345;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=2.247;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.567;QD=25.61;ReadPosRankSum=3.141;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:19,53:0.74:72
chr18	30936121	rs9948028	C	T	56.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	30950168	rs9965655	T	C	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr18	30976968	rs4447495	C	G	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	30977255	rs6507018	G	A	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr18	31225030	rs4799705	G	T	1457.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:25,58:0.70:83
chr18	31241497	rs9304126	C	G	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:30,34:0.53:64
chr18	31263320	rs8086318	G	A	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:107,167:0.61:274
chr18	31312106	rs10432168	T	C	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr18	31314196	rs34501189	A	G	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr18	31318376	rs1493910	A	G	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr18	31320229	rs2282632	A	G	4624.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:148,212:0.59:360
chr18	31324934	rs7232237	A	G	2729.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:93,128:0.58:221
chr18	31463174	rs199947605	T	TA	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.331;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=3.87;ReadPosRankSum=2.459;SOR=0.918;set=HC	GT:AD:AF:DP	0/1:102,52:0.34:154
chr18	32386125	rs4458079	T	C	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:17,21:0.55:38
chr18	32585367	rs80105629	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,29:0.59:49
chr18	32650341	rs3744923	A	G	589.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr18	32720189	rs3786314	A	G	1387.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:56,60:0.52:116
chr18	32822352	rs73426512	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr18	32822382	rs4799374	G	T	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	32823905	rs1054890	T	C	3477.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr18	32826088	rs2278463	A	G	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:77,93:0.55:170
chr18	32836089	rs4799376	T	C	171.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	32838807	rs7229055	T	C	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.35;QD=28.10;SOR=2.712;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	32844056	rs75902053	G	T	5885.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:135,253:0.65:388
chr18	32886528	rs147217916	T	TAGTC	3770.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	32887914	rs1131709	A	G	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,42:0.60:70
chr18	32887933	rs9963614	A	G	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	32917644	rs2032729	T	C	4864.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr18	32917780	rs5823970	G	GA	850.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	32948446	.	T	TTTTATTTATTTA,TTTTATTTATTTATTTA	1797.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.18;QD=49.94;SOR=1.949;set=HC	GT:AD:AF:DP	1/2:0,15,21:0.42,0.58:36
chr18	32948510	rs2909340	G	A	884.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	33048554	rs3088182	C	T	997.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:38,47:0.55:85
chr18	33243536	rs3744989	A	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.74;ReadPosRankSum=1.131;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr18	33269267	rs3737382	A	C	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.005;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.46;ReadPosRankSum=0.078;SOR=0.449;set=HC	GT:AD:AF:DP	0/1:48,30:0.38:78
chr18	33269274	rs3737383	T	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.987;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=3.639;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.16;ReadPosRankSum=1.311;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:45,24:0.35:69
chr18	33283000	rs146875761	A	AT	571.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr18	33514028	rs140875237	C	T	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:40,25:0.38:65
chr18	33514044	rs74524767	G	A	1241.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr18	33552986	rs75299916	A	G	2307.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	33557466	rs2276314	A	G	4777.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr18	33573400	rs16967317	A	G	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	33605441	rs77141393	A	G	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	33605687	.	C	G	1637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-1.189;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:31,76:0.71:107
chr18	33605817	rs148504378	T	TA	131.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	33613595	rs3737474	T	C	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	33706614	rs1789528	C	G	14678.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr18	33706642	rs137934549	C	T	3162.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:258,169:0.40:427
chr18	33721484	rs17648916	A	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	33722121	rs79184296	TA	CG	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	33722425	rs1789549	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr18	33725866	rs117959355	A	G	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:81,37:0.31:118
chr18	33744702	rs17649067	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	33750274	.	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=0.918;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr18	33767568	rs113873219	C	A	1486.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	33778607	rs596644	C	A	7468.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr18	33779821	rs646424	C	A	10089.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr18	33779855	rs623053	C	T	11584.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr18	33779896	rs540967	A	G	14360.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr18	33780020	rs623558	A	G	18371.77	.	AC=2;AF=1.00;AN=2;DB;DP=700;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr18	33785093	rs678560	G	A	3483.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr18	33785185	rs667667	A	G	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr18	33785304	rs667195	T	C	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	33793511	rs687387	T	C	1235.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	33795425	rs631108	G	A	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	33828980	rs567458	C	G	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.819;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.61;ReadPosRankSum=-0.116;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:50,69:0.58:119
chr18	33829077	rs568388	T	C	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:27,25:0.48:52
chr18	33831044	rs518413	C	T	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:5,6:0.55:11
chr18	33831189	rs594445	C	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:47,106:0.69:153
chr18	33848663	rs111317566	A	ATACAT	2867.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr18	33877687	rs188660514	T	C	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr18	34081849	rs17565834	A	G	596.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:27,31:0.53:58
chr18	34205385	rs2644253	A	G	520.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	34232610	rs2848901	C	T	3491.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr18	34232952	rs1893433	T	C	2621.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	34233231	rs1893434	C	T	8929.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr18	34297753	rs3809994	C	T	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	34298732	rs7240383	G	C	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	34310668	rs3744903	C	T	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.00;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr18	34323855	rs11878091	T	C	829.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	34324091	rs2303510	G	A	5087.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr18	34324190	rs2303509	C	T	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	34335360	rs200164880	CTTTTTTTTT	C	549.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.168;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=34.36;ReadPosRankSum=2.070;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:2,14:0.88:16
chr18	34398914	rs1045781	C	T	7379.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr18	34408969	rs9958080	C	G	476.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	34539578	rs3744904	A	G	206.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr18	34850846	rs1443638	G	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr18	34854267	rs143810394	C	T	2232.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:73,92:0.56:165
chr18	34901677	rs72883696	G	A	433.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr18	35065374	rs5824066	CG	C	796.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	35065396	rs4799451	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	35145660	rs138975334	T	TCTCG	2009.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	37201910	rs2852341	G	A	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.296;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-0.298;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:38,10:0.21:48
chr18	39535169	rs3833864	T	TC	892.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr18	39542407	rs33946724	GAT	G	2994.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	39570683	rs11082257	A	G	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.48;ReadPosRankSum=-2.722;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	39584264	rs3819162	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr18	39584412	rs34205132	T	C	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:72,122:0.63:194
chr18	39600755	rs8095411	A	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chr18	39623942	rs534507	A	G	510.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	40323497	rs1804730	G	T	1712.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:221,100:0.31:321
chr18	40323764	rs1430922	G	C	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr18	40503735	rs10633642	G	GAA	574.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.239;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=0.000;QD=10.08;ReadPosRankSum=0.191;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:23,34:0.60:57
chr18	40554120	rs16977171	A	G	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:49,60:0.55:109
chr18	40613840	rs12954451	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=1.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.18;ReadPosRankSum=2.034;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr18	41559142	rs7229537	G	A	202.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.242;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=3.358;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.56;ReadPosRankSum=-0.623;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chr18	41559193	rs374835698	GTTTTT	G	306	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.014;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.82;ReadPosRankSum=1.588;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:1,10:0.91:11
chr18	41559268	rs7230555	T	G	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:36,30:0.45:66
chr18	41559321	rs7229587	C	G	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=2.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.36;ReadPosRankSum=-0.612;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:48,41:0.46:89
chr18	42456653	rs663651	G	A	2476.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;MQ=60.21;set=Intersection	GT:AD:AF:DP	0/1:93,117:0.56:210
chr18	42456670	rs3085861	C	CTCTT	4298.73	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:87,111:0.56:198
chr18	42529996	rs11082414	G	C	1739.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:169,94:0.36:263
chr18	42533130	rs8096662	A	G	1215.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:99,65:0.40:164
chr18	43206985	rs1484873	A	G	692.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr18	43221341	rs7233416	T	C	3307.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:111,152:0.58:263
chr18	43243679	rs8092227	A	G	227.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chr18	43245986	rs7234198	T	G	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr18	43246156	rs9960464	G	A	2675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.561;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.74;ReadPosRankSum=-0.081;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:84,126:0.60:210
chr18	43246779	rs2170973	C	T	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:11,16:0.59:27
chr18	43247001	rs2156609	C	G	1237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=1.656;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:38,58:0.60:96
chr18	43247784	rs9964193	C	T	2029.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:30,88:0.75:118
chr18	43248504	rs6507631	T	C	4749.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=1.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.02;ReadPosRankSum=-0.476;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:101,125:0.55:226
chr18	43248509	rs10451385	T	C	4626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.52;ReadPosRankSum=-0.507;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:98,117:0.54:215
chr18	43248578	rs9304319	C	A	729.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:37,35:0.49:72
chr18	43252786	rs1531926	A	G	2818.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr18	43253100	rs1000501	C	T	680.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr18	43262359	rs3745009	G	A	9225.77	.	AC=1;AF=0.500;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	0/1:227,428:0.65:655
chr18	43262501	rs3745008	C	T	2287.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:41,93:0.69:134
chr18	43262532	rs3745007	C	A	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:33,52:0.61:85
chr18	43307246	rs11877062	C	T	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.91;ReadPosRankSum=-2.103;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:35,52:0.60:87
chr18	43307338	rs11877086	C	A	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:47,64:0.58:111
chr18	43307455	rs3861806	C	T	627.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	43310845	rs3819178	G	C	457.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:1,17:0.94:18
chr18	43314100	rs28994298	C	T	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,23:0.35:66
chr18	43314401	rs35812340	G	GA	682.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:3,36:0.92:39
chr18	43314473	rs8096571	T	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,9:0.56:16
chr18	43316538	rs2298718	A	G	4165.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:130,202:0.61:332
chr18	43319060	rs473429	T	C	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:102,75:0.42:177
chr18	43319359	rs531281	C	T	2275.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	43319519	rs1058396	G	A	4140.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:102,189:0.65:291
chr18	43328295	rs474270	G	A	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:149,103:0.41:252
chr18	43405792	rs1440822	T	C	4043.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:128,197:0.61:325
chr18	43418828	rs201159400	G	A	3204.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:295,174:0.37:469
chr18	43435738	rs514001	A	C	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:19,27:0.59:46
chr18	43438156	rs567801	C	T	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:3,5:0.62:8
chr18	43438836	rs139942774	A	AT	79.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr18	43445730	rs11333207	CA	C	207.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=2.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=-0.941;SOR=0.395;set=HC	GT:AD:AF:DP	0/1:43,30:0.41:73
chr18	43446734	rs3826633	T	C	2567.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:55,115:0.68:170
chr18	43450753	rs11334955	TA	T	319.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.318;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.39;ReadPosRankSum=0.185;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:18,32:0.64:50
chr18	43492121	rs67738770	CAGAG	C	355.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr18	43497710	rs3744998	A	G	3947.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:107,185:0.63:292
chr18	43502190	rs1075906	G	T	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:8,23:0.74:31
chr18	43505558	rs4476262	C	G	1096.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr18	43523908	rs55950321	T	C	2575.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:50,100:0.67:150
chr18	43547127	rs11301517	TG	T	5290.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	43652027	rs114538737	C	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:56,31:0.36:87
chr18	43652345	rs3745002	A	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:19,20:0.51:39
chr18	43669754	rs41274314	A	T	3134.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:64,138:0.68:202
chr18	43670050	rs55743028	G	T	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:96,131:0.58:227
chr18	43678035	rs3753069	T	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:61,30:0.33:91
chr18	43684300	rs41274316	C	A	243.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chr18	43684330	rs41274318	G	C	574.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr18	43684561	rs72903449	C	A	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:188,102:0.35:290
chr18	43698309	rs1866321	C	T	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=0.267;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:77,27:0.26:104
chr18	43702733	rs9965812	C	T	423.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr18	43705822	.	GTCT	G	37	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=3;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=2;NR=0;PP=37;QD=33.0;SC=TATAGCTAAAGTCTTCTTCAT;SbPval=0.15;Source=Platypus;TC=8;TCF=3;TCR=5;TR=2;WE=43705832;WS=43705812;set=Platypus	GT:AD:AF:DP	1/0:6,2:0.25:8
chr18	43707900	rs74402027	A	G	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.42;ReadPosRankSum=1.710;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	43833701	rs34068795	T	TCTG	1946.73	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:94,54:0.36:148
chr18	43914438	rs8084936	A	C	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	44063598	rs1377016	G	A	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:61,114:0.65:175
chr18	44063718	rs143514947	AC	A	426.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,21:0.45:47
chr18	44101990	rs188666577	C	T	2077.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:28,84:0.75:112
chr18	44109115	rs59252058	G	A	4747.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr18	44114473	rs436433	T	C	6823.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr18	44122010	rs10775482	T	C	1833.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	44124967	rs988213	A	G	942.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	44125590	rs56323729	CTTTT	C	657.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.19;QD=38.69;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr18	44126909	rs1893566	T	C	12489.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr18	44135027	rs732108	A	G	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:40,48:0.55:88
chr18	44135143	rs11665444	T	C	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:54,106:0.66:160
chr18	44137279	.	C	G	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.335;ClippingRankSum=0.000;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=1.991;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:352,135:0.28:487
chr18	44138902	rs4243280	C	T	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr18	44149474	rs2086005	G	A	3063.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=-0.313;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:59,141:0.70:200
chr18	44157489	rs328167	G	T	261.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr18	44157506	rs328166	G	T	287.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr18	44173449	rs328145	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	44181596	rs674948	G	A	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:27,20:0.43:47
chr18	44197963	rs328130	A	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chr18	44272034	rs533027	A	C	1512.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr18	44559730	rs78014467	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr18	44560300	rs3744863	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	44560429	rs892586	C	A	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr18	44560875	rs2010834	C	A	11361.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr18	44561100	rs2571028	C	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	44561516	rs2571027	C	G	540.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	44580919	rs2576041	C	T	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,75:0.68:111
chr18	44585955	rs7233515	G	A	1791.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:85,89:0.51:174
chr18	44595809	rs2289036	A	T	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:100,47:0.32:147
chr18	44601611	rs3816125	A	G	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:258,119:0.32:377
chr18	44610718	rs16954999	T	C	1498.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:136,81:0.37:217
chr18	44610879	rs7504798	A	G	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:112,54:0.33:166
chr18	44635048	rs2635058	C	T	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr18	44702502	rs12968552	A	C	611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.764;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.866;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:107,36:0.25:143
chr18	44702718	rs2277717	C	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:158,83:0.34:241
chr18	44746460	rs1355593	A	T	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr18	44771419	.	A	AT	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.396;ClippingRankSum=0.000;DP=233;ExcessHet=3.0103;FS=1.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.590;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:148,32:0.18:180
chr18	44773068	rs35717325	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:36,71:0.66:107
chr18	44773382	rs9956387	A	T	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.44;ReadPosRankSum=1.258;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:148,64:0.30:212
chr18	45395845	rs34501809	TA	T	558.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.519;QD=10.16;ReadPosRankSum=-0.418;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:10,45:0.82:55
chr18	45555829	rs7231151	T	C	12152.77	.	AC=1;AF=0.500;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	0/1:363,573:0.61:936
chr18	45567590	rs72918159	G	C	731.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:16,31:0.66:47
chr18	45691715	rs9646522	T	C	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:15,21:0.58:36
chr18	45706779	rs7228157	T	C	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:171,113:0.40:284
chr18	45711740	rs12455480	T	C	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.17;ReadPosRankSum=-0.826;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:54,89:0.62:143
chr18	46190721	rs3816755	G	A	1907.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:163,93:0.36:256
chr18	46196856	rs3830253	AC	A	718.73	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,21:0.51:41
chr18	46196880	rs2279304	T	G	535.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chr18	46284587	rs1038308	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:243,149:0.38:392
chr18	46343818	rs9951895	T	C	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:88,40:0.31:128
chr18	46343913	rs62103298	A	G	84.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:27,7:0.21:34
chr18	46384073	rs937021	A	G	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	46385948	rs3752082	A	G	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:2,457:1.00:459
chr18	46468946	rs3764482	G	A	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=1.812;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.94;ReadPosRankSum=-1.295;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:211,135:0.39:346
chr18	46474746	rs3736242	C	T	2254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.645;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.11;ReadPosRankSum=2.216;SOR=0.983;set=HC	GT:AD:AF:DP	0/1:66,106:0.62:172
chr18	46690257	rs151119533	AT	A	317.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr18	47088655	rs34474737	T	G	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=3.016;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.28;ReadPosRankSum=0.542;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:20,22:0.52:42
chr18	47088826	rs35978968	C	T	2343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.219;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.92;ReadPosRankSum=-0.477;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:39,59:0.60:98
chr18	47088830	rs35816125	C	G	2387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.88;ReadPosRankSum=-1.349;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:38,62:0.62:100
chr18	47093790	rs2000812	C	T	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=26.05;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	47093864	rs2000813	C	T	1915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.68;ReadPosRankSum=-2.096;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:70,94:0.57:164
chr18	47102002	rs2276269	T	C	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	47113008	rs6507931	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	47311513	rs17657133	A	G	1751.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:37,84:0.69:121
chr18	47313643	rs2259175	A	C	104.85	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.48;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	47318473	rs17713584	G	C	780.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,35:0.57:61
chr18	47328930	rs10680947	C	CA,CAA	527.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.356;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.24;MQRankSum=0.597;QD=11.99;ReadPosRankSum=0.324;SOR=0.931;set=HC	GT:AD:AF:DP	1/2:10,17,17:0.39,0.39:44
chr18	47339798	rs2945506	G	A	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr18	47363009	rs621101	C	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:82,71:0.46:153
chr18	47373466	rs3017176	G	A	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.81;ReadPosRankSum=-3.311;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:67,41:0.38:108
chr18	47375932	rs488890	C	G	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=4.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.63;ReadPosRankSum=-1.573;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr18	47376103	rs490648	C	G	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.029;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=-1.117;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:36,21:0.37:57
chr18	47376128	rs490697	A	G	1107.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.76;SOR=1.055;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	47376162	rs17713847	G	A	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-0.743;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr18	47390805	rs4939898	C	T	4460.77	.	AC=1;AF=0.500;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	0/1:106,205:0.66:311
chr18	47398504	rs3826580	T	C	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:32,65:0.67:97
chr18	47398549	rs3826579	G	A	2215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=1.300;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.76;ReadPosRankSum=0.441;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:57,104:0.65:161
chr18	47401935	rs2276172	C	T	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:32,38:0.54:70
chr18	47401999	rs2276173	A	T	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:73,129:0.64:202
chr18	47402280	rs657424	A	C	613.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	47404124	rs75971548	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr18	47404399	rs2276175	A	G	953.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr18	47405304	rs2276176	A	G	1109.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,53:0.69:77
chr18	47405425	rs3841750	T	TGAG	7412.73	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:82,183:0.69:265
chr18	47405525	rs4939602	T	C	4394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.126;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.369;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.80;ReadPosRankSum=-1.800;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:52,112:0.68:164
chr18	47405530	rs4939603	C	T	4255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.431;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.94;ReadPosRankSum=-1.121;SOR=0.908;set=HC	GT:AD:AF:DP	0/1:52,106:0.67:158
chr18	47406913	rs1217632	A	G	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:64,34:0.35:98
chr18	47406938	rs1217633	T	C	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.932;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.139;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:51,31:0.38:82
chr18	47455980	rs56278513	GA	G	494.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.99;MQRankSum=1.257;QD=9.70;ReadPosRankSum=0.430;SOR=0.596;set=HC	GT:AD:AF:DP	0/1:9,42:0.82:51
chr18	47463587	rs1790797	A	G	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr18	47463872	rs1787519	A	G	1798.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:45,81:0.64:126
chr18	47480660	rs1787299	G	A	2367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.908;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-2.454;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:80,112:0.58:192
chr18	47489430	rs58191032	G	A	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:74,135:0.65:209
chr18	47489480	rs16951327	C	T	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:58,81:0.58:139
chr18	47563299	rs1815930	T	C	9148.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr18	47563429	rs58132038	G	A	1607.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:145,87:0.38:232
chr18	47583036	rs2852104	C	A	1553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-1.140;QD=11.68;ReadPosRankSum=-0.321;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:57,76:0.57:133
chr18	47721261	rs111999307	G	A	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:25,38:0.60:63
chr18	47765121	rs35839946	G	C	812.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:41,38:0.48:79
chr18	47777244	rs35193847	C	T	3939.77	.	AC=1;AF=0.500;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	0/1:98,185:0.65:283
chr18	47778172	rs35295154	A	G	3015.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:84,135:0.62:219
chr18	47787402	rs1899671	G	A	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr18	47787622	rs71169499	CAA	C	75.87	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.98;QD=15.17;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr18	47788256	rs698617	C	T	479.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	47796399	rs183864846	A	C	536.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr18	47801800	rs140690	G	A	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:69,105:0.60:174
chr18	47802971	rs10775495	A	G	6718.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr18	47803354	rs140686	C	T	1670.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:227,97:0.30:324
chr18	47806092	rs1562004	A	G	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr18	47809871	rs12458654	G	T	4508.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:151,215:0.59:366
chr18	47810251	rs3819217	C	G	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	0/1:253,143:0.36:396
chr18	47810351	rs7228084	A	G	8988.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr18	47810731	rs2276367	T	C	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	47902337	rs1970679	A	G	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	47906416	rs1441293	A	G	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	47906690	rs1441294	T	C	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	47906719	rs1441295	T	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	48190271	rs3752085	T	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:15,36:0.71:51
chr18	48241665	.	CACTT	C	1252.73	.	AC=1;AF=0.500;AN=2;DP=76;set=Intersection	GT:AD:AF:DP	0/1:32,33:0.51:65
chr18	48326378	rs2586778	G	T	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:33,47:0.59:80
chr18	48327815	rs2276186	G	A	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:51,78:0.60:129
chr18	48443987	rs201408498	A	AT	703.73	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr18	48446953	rs674210	C	T	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:29,37:0.56:66
chr18	48458662	rs649224	G	A	2732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.097;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:87,133:0.60:220
chr18	48577782	rs7229678	G	C	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	48584855	rs57847829	A	AT,ATT	1264.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.741;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.20;MQRankSum=0.471;QD=17.09;ReadPosRankSum=1.490;SOR=1.247;set=HC	GT:AD:AF:DP	1/2:9,17,48:0.23,0.65:74
chr18	48592085	rs117524466	A	G	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:4,4:0.50:8
chr18	48723217	rs35675106	C	T	5945.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:1,236:1.00:237
chr18	48991891	rs7241264	G	A	3158.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:65,139:0.68:204
chr18	49867224	rs9951523	T	C	5407.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.90;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	50432602	rs2229080	C	G	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr18	50731829	rs4497763	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	50923932	rs7231978	G	T	2338.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	50929098	rs10612041	CAAT	C	9357.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr18	50994505	rs79528572	G	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.31;ReadPosRankSum=-1.080;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr18	51053218	rs113173464	T	TCACCCCAGGC	2342.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	51686057	rs9946304	G	C	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:47,33:0.41:80
chr18	51795957	rs10584411	GCGA	G	1453.73	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr18	51797620	rs3730685	C	CTA	3240.73	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:60,81:0.57:141
chr18	51804259	rs610281	C	T	1991.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:40,87:0.69:127
chr18	51809122	rs2956141	A	T	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:4,12:0.75:16
chr18	51819989	rs660793	G	C	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr18	51820805	rs8305	G	A	1340.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:66,60:0.48:126
chr18	51858197	rs17470798	A	G	3145.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:88,144:0.62:232
chr18	51880586	rs141426557	AT	A	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=0.756;QD=17.81;ReadPosRankSum=-0.903;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:7,16:0.70:23
chr18	51880986	rs1370363	C	T	946.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,41:0.68:60
chr18	51889056	rs6508290	A	G	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr18	51900788	rs71297084	T	TTTAA	529.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chr18	51904461	rs35286005	C	CTTTA	1250.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	51904498	rs3753057	G	A	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:39,33:0.46:72
chr18	51904641	rs3753056	A	G	5582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.85;ReadPosRankSum=0.794;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:75,141:0.65:216
chr18	51904644	rs3753055	G	A	5545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.53;ReadPosRankSum=-0.298;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:71,138:0.66:209
chr18	52265308	rs9947055	A	C	3675.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:279,193:0.41:472
chr18	52551716	rs3737477	C	T	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:76,46:0.38:122
chr18	52555398	rs4343367	G	A	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr18	52571434	rs4801109	T	C	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr18	52571741	rs4801110	C	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr18	52575002	rs1944382	G	A	4971.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr18	52585071	rs138785518	GACACACAC	G,GACACACACAC	878.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=43;set=Intersection	GT:AF:DP	1/2:0.28,0.56:39
chr18	52604083	rs74991234	T	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:138,91:0.40:229
chr18	52608329	rs8087479	C	A	1992.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.944;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=21.90;ReadPosRankSum=-0.806;SOR=1.030;set=HC	GT:AD:AF:DP	1/1:4,87:0.96:91
chr18	52609806	rs143449012	TAC	T	291.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.715;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.83;ReadPosRankSum=0.938;SOR=1.395;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr18	52895531	rs8766	T	C	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:83,142:0.63:225
chr18	52895657	rs10221362	C	T	786.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:13,33:0.72:46
chr18	52921606	rs1539950	C	T	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chr18	52921673	rs1539951	T	C	271.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:18,14:0.44:32
chr18	52922000	rs62092442	T	C	303.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr18	52942827	rs1788027	G	A	1085.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.87;ReadPosRankSum=1.601;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:23,50:0.68:73
chr18	53131202	.	TGTGTGTGA	T	332	.	AC=1;AF=0.500;AN=2;BRF=0.34;FR=0.5000;HP=2;HapScore=3;MGOF=2;MMLQ=28;MQ=57.35;NF=3;NR=2;PP=332;QD=67.0;SC=TGTGTGTGTGTGTGTGTGAGA;SbPval=0.61;Source=Platypus;TC=8;TCF=5;TCR=3;TR=5;WE=53131219;WS=53131192;set=Platypus	GT:AD:AF:DP	1/0:3,5:0.62:8
chr18	53131488	rs3760600	C	A	61.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.86;ReadPosRankSum=-2.655;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,4:0.44:9
chr18	53177670	rs9957668	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	53177740	rs9954890	A	T	608.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=1.426;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr18	53177774	rs9964328	G	C	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	53178061	rs67387556	G	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	53302845	rs610362	C	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	53303101	rs611326	C	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr18	53332089	rs796742	C	T	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	53696010	rs1477440	A	G	3790.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	53696180	rs2551452	C	A	2152.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;MQ=60.14;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr18	53696212	rs34257372	ATGAG	A	1562.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr18	53727502	rs2535724	T	C	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr18	54293843	rs11664091	C	T	448.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	54339818	rs568078	C	G	4696.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr18	54339977	rs566956	A	G	1008.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	54346482	rs683248	T	G	1438.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr18	54346510	rs597585	G	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr18	54346745	rs11452823	A	AT	924.76	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:9,50:0.85:59
chr18	54346804	rs525682	T	G	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	54348514	rs605067	C	T	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	54348650	rs474607	T	C	1287.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr18	54353382	rs609195	A	T	959.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	54354074	rs1943016	C	T	3178.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	54354076	rs5825199	T	TTC	3282.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr18	54354239	rs576095	T	C	857.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr18	54359062	rs2110414	G	A	1144.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	54363747	rs1468742	A	G	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	54448778	rs2302845	G	A	2846.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr18	54483146	rs3745038	A	G	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	54694452	rs3745033	C	T	8437.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr18	55019963	.	T	TCACACA	1414.73	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,46:0.57:81
chr18	55027212	rs1942964	T	G	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:104,72:0.41:176
chr18	55111632	rs4060160	C	A	865.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:117,51:0.30:168
chr18	55134288	rs597720	A	G	718.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.748;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-0.023;SOR=0.555;set=HC	GT:AD:AF:DP	0/1:65,42:0.39:107
chr18	55143589	rs618953	A	G	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	55221648	rs536560	T	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:101,55:0.35:156
chr18	55226254	rs1736440	T	C	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,20:0.26:77
chr18	55226383	rs536765	G	C	2753.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=508;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=-0.183;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:333,167:0.33:500
chr18	55240455	rs577152	T	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.124;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	55247454	rs2269219	G	A	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr18	55253710	rs317815	G	A	2795.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr18	55268866	rs2070109	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:118,73:0.38:191
chr18	55287739	rs388644	A	C	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	55288007	rs389031	G	A	721.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	55288879	rs368935	A	G	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:1,167:0.99:168
chr18	55309018	rs385648	C	T	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr18	55317676	rs222581	C	T	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr18	55319444	rs17759233	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:43,29:0.40:72
chr18	55321076	rs72942282	A	G	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:52,37:0.42:89
chr18	55335412	rs317845	A	G	3155.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr18	55335495	rs317844	A	G	2118.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	55335786	rs369806212	T	TAAAAAA	943.73	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;QD=33.70;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	55338656	rs317838	G	A	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr18	55352436	rs319459	G	A	5258.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	55352470	rs143958246	TTTA	T	4475.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	55361778	rs319444	C	T	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr18	55362532	rs319443	T	G	3182.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr18	55362816	rs319442	G	A	494.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr18	55364830	rs319439	G	A	1684.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	55364852	rs319438	A	G	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr18	55397512	rs319432	T	G	1181.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr18	55397624	rs33964473	GATA	G	7269.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr18	55397674	rs319433	G	C	5730.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr18	55397871	rs319434	T	C	9963.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr18	55398604	.	TAT	CAC	163	.	AC=2;AF=1.00;AN=2;BRF=0.45;FR=0.9998;HP=2;HapScore=2;MGOF=48;MMLQ=20;MQ=60.0;NF=11;NR=1;PP=163;QD=18.0389895719;SC=TATATATATATATACACACAC;SbPval=0.51;Source=Platypus;TC=17;TCF=16;TCR=1;TR=12;WE=55398614;WS=55398594;set=Platypus	GT:AD:AF:DP	1/1:5,12:0.71:17
chr18	55398756	rs651867	T	C	6278.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,238:1.00:238
chr18	55686257	rs17755149	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:179,100:0.36:279
chr18	55711867	rs113358301	C	T	2358.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:52,110:0.68:162
chr18	55983330	rs2288774	T	C	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	55990648	rs33986394	T	TA	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:56,33:0.37:89
chr18	55997929	rs144384654	CTTCT	C	483.73	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:50,16:0.24:66
chr18	56008148	rs4149609	A	G	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chr18	56008827	rs4149611	CGTT	C	1053.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:70,31:0.31:101
chr18	56024396	rs201044327	ATT	A	1029.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.276;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.788;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=1.065;QD=6.96;ReadPosRankSum=1.852;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:91,57:0.39:148
chr18	56037849	rs2075405	A	G	377.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr18	56040649	rs1943994	T	C	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr18	56054616	rs5825274	AT	A	309.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.195;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.383;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.057;QD=7.55;ReadPosRankSum=-0.790;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:17,24:0.59:41
chr18	56054651	.	G	GT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=-0.767;QD=0.95;ReadPosRankSum=-0.374;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:49,14:0.22:63
chr18	56118493	rs17669	C	T	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:23,32:0.58:55
chr18	56149048	rs3744867	A	G	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr18	56149099	rs7240666	T	C	1822.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:124,93:0.43:217
chr18	56165164	rs2277720	G	A	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:106,67:0.39:173
chr18	56182174	rs7505023	T	C	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr18	56182507	rs4940399	C	G	1635.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr18	56191351	rs7228617	C	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	56196451	rs7236563	C	T	1606.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:50,72:0.59:122
chr18	56196492	rs10451415	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:47,26:0.36:73
chr18	56201945	rs13381117	G	A	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:23,6:0.21:29
chr18	56202059	rs10469211	A	G	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr18	56202418	rs10469212	T	C	8377.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,304:1.00:304
chr18	56202768	rs3809983	C	A	4291.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:133,192:0.59:325
chr18	56202982	rs3826594	A	T	3489.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:69,149:0.68:218
chr18	56203074	rs3809982	G	A	2573.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:74,113:0.60:187
chr18	56203120	rs3809981	C	T	2110.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:78,95:0.55:173
chr18	56203411	rs3809980	G	C	2671.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:74,118:0.61:192
chr18	56203447	rs3809979	A	G	2799.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:77,122:0.61:199
chr18	56203891	rs3809978	G	T	5929.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;ClippingRankSum=0.000;DB;DP=226;ExcessHet=3.0103;FS=4.955;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=-0.389;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:73,152:0.68:225
chr18	56203898	rs3809977	T	G	5678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=8.260;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.66;ReadPosRankSum=-0.199;SOR=1.041;set=HC	GT:AD:AF:DP	0/1:73,140:0.66:213
chr18	56204250	rs3809976	A	C	4592.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:127,210:0.62:337
chr18	56204387	rs67925233	ACAGTTGATGTGTCCT	A	5540.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:135,140:0.51:275
chr18	56204410	rs55910046	C	T	5695.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:125,148:0.54:273
chr18	56204671	rs4940404	A	T	1097.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:32,47:0.59:79
chr18	56204747	rs3826593	G	A	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chr18	56204932	rs3809973	T	G	3923.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:156,183:0.54:339
chr18	56204945	rs3809972	C	G	3949.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:166,187:0.53:353
chr18	56204977	rs3809971	C	T	4459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=441;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.23;ReadPosRankSum=0.320;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:217,219:0.50:436
chr18	56204991	rs3809970	C	T	4901.77	.	AC=1;AF=0.500;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	0/1:232,235:0.50:467
chr18	56205262	rs12103986	A	C	7826.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:170,345:0.67:515
chr18	56205481	rs9962203	G	A	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:32,51:0.61:83
chr18	56205551	rs9962964	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr18	56245965	.	GAC	G	64.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.494;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.838;QD=1.96;ReadPosRankSum=0.437;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr18	56245968	.	A	ACACACACGCGCGCACGCGCGCG	284.73	.	AC=1;AF=0.500;ALERT;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,5:0.16:31
chr18	56246442	rs12606191	T	C	5069.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:312,253:0.45:565
chr18	56247180	rs9958735	T	C	1827.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:142,91:0.39:233
chr18	56247567	rs9956630	A	G	1874.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:211,104:0.33:315
chr18	56247600	rs9944810	C	A	2031.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:277,123:0.31:400
chr18	56274514	rs6566986	A	G	1523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=0.419;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:124,80:0.39:204
chr18	56274720	.	G	GA	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.46;ReadPosRankSum=0.224;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:61,18:0.23:79
chr18	56279025	rs6566987	T	G	241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.771;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:34,17:0.33:51
chr18	56279052	rs61636682	G	GA	72.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-0.658;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:14,8:0.36:22
chr18	56383323	rs9959997	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chr18	56400826	rs28740963	T	C	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:9,21:0.70:30
chr18	56409002	rs4940747	A	C	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr18	56412784	rs58993112	C	T	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:14,6:0.30:20
chr18	56587967	rs66553426	CGTGTGTGT	C	236.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;ClippingRankSum=-0.000;DB;DP=84;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=0.473;QD=14.76;ReadPosRankSum=0.733;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:9,7:0.44:16
chr18	56646583	rs35743757	A	AAAAT	619.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr18	56648756	rs61733373	C	T	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:6,15:0.71:21
chr18	56703194	rs9961940	A	C	2023.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	56711225	rs11152115	A	C	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr18	56711284	rs11152116	C	T	3018.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	56887507	rs1062557	C	A	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	57000303	rs2298712	G	A	1230.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr18	57014812	rs11354119	TA	T	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.363;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.706;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:30,10:0.25:40
chr18	57014889	rs8095245	T	C	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:10,4:0.29:14
chr18	57021738	rs3835325	AAC	A	367.73	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:48,27:0.36:75
chr18	57022754	rs1127220	T	C	2736.77	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:266,145:0.35:411
chr18	57115133	rs3809990	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr18	57115203	rs1893788	T	C	521.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:52,27:0.34:79
chr18	57133862	rs8083041	T	A	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.559;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=2.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.42;ReadPosRankSum=0.497;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr18	57134152	rs4940876	A	G	714.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	57136869	rs632899	A	G	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:28,38:0.58:66
chr18	57136902	rs663452	C	A	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:18,28:0.61:46
chr18	57136943	rs650033	G	A	203.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,10:0.56:18
chr18	57147351	rs1663548	G	A	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr18	57147390	rs1790508	C	G	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	57637560	rs112843209	T	TCA	7372.73	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:115,190:0.62:305
chr18	57638330	rs10871774	G	A	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=0.907;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:75,29:0.28:104
chr18	58297970	rs144226527	C	T	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:263,166:0.39:429
chr18	59157764	rs680530	T	C	8794.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr18	59158065	rs681902	T	G	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	59166541	rs12964819	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:68,35:0.34:103
chr18	59166762	.	T	TACAC	90	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=2;HapScore=2;MGOF=0;MMLQ=28;MQ=60.0;NF=0;NR=2;PP=90;QD=50.0;SC=CCTATATATATACACACACAC;SbPval=1.0;Source=Platypus;TC=7;TCF=2;TCR=5;TR=2;WE=59166770;WS=59166752;set=Platypus	GT:AD:AF:DP	1/0:5,2:0.29:7
chr18	59170304	rs595093	C	G	5497.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr18	59174817	rs1547956	C	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,28:0.64:44
chr18	59206197	rs5825446	C	CT	3126.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:3,138:0.98:141
chr18	59206480	rs11875000	C	T	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr18	59212511	rs5825448	AT	A	281.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.877;QD=10.84;ReadPosRankSum=-0.053;SOR=0.064;set=HC	GT:AD:AF:DP	1/1:4,22:0.85:26
chr18	59217504	rs10439060	T	A	532.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.026;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=-1.375;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:57,30:0.34:87
chr18	59739962	.	TA	T	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=-0.737;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr18	59768375	rs17714063	A	G	3666.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743;ClippingRankSum=0.000;DB;DP=319;ExcessHet=3.0103;FS=0.856;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.49;ReadPosRankSum=-1.691;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:139,180:0.56:319
chr18	59770033	rs12326381	C	T	3286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.563;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=2.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.09;ReadPosRankSum=-0.960;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:94,157:0.63:251
chr18	59772926	rs17714262	G	A	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr18	59774037	rs9319997	C	T	1974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-0.044;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:78,98:0.56:176
chr18	59774186	rs2840359	T	C	927.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:21,41:0.66:62
chr18	59780424	rs17714875	A	G	3016.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:118,143:0.55:261
chr18	59781592	rs71902463	C	CAA	117.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.82;ReadPosRankSum=-0.282;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr18	59781800	rs13381627	A	G	1390.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:45,66:0.59:111
chr18	59781955	rs13381633	A	T	396.88	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:1,16:0.94:17
chr18	59805532	rs9959632	T	C	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	59807547	rs55951317	T	TA	144.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:13,11:0.46:24
chr18	59807604	rs55715769	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:21,25:0.54:46
chr18	59807796	rs56189211	A	T	171.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:12,9:0.43:21
chr18	59810563	rs34227891	A	G	992.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:35,47:0.57:82
chr18	59813265	rs61751989	A	T	1578.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:45,71:0.61:116
chr18	59814268	rs9320000	G	A	1642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.109;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.175;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:61,80:0.57:141
chr18	59814324	rs9320001	G	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:28,34:0.55:62
chr18	59815284	rs7243994	G	C	30.83	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.28;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr18	59821949	rs11659731	G	A	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:9,15:0.62:24
chr18	59824209	rs1021952	A	T	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr18	59824490	rs1021953	A	T	2418.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:53,105:0.66:158
chr18	59825109	rs17715866	A	C	1269.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:33,51:0.61:84
chr18	59855291	rs17644012	C	T	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,21:0.39:54
chr18	59894764	rs17717783	T	C	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:129,160:0.55:289
chr18	59936081	rs55806215	A	T	417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.29;ReadPosRankSum=0.703;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:17,20:0.54:37
chr18	59936142	rs17645999	C	T	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.62;ReadPosRankSum=0.147;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:36,47:0.57:83
chr18	59942746	.	A	AT	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=1.212;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:31,41:0.57:72
chr18	59946943	rs10515985	G	A	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr18	59947118	rs2980981	G	A	4384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=308;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.38;ReadPosRankSum=-0.139;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:101,204:0.67:305
chr18	59947988	rs1506325	G	A	1315.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:36,60:0.62:96
chr18	59954765	rs1567038	G	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:33,61:0.65:94
chr18	59992547	rs7238731	G	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.90;ReadPosRankSum=2.572;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,4:0.33:12
chr18	60015291	.	CAAAAAAAAAAA	C	1203.73	.	AC=1;AF=0.500;AN=2;DP=44;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr18	60025458	.	G	GT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=3.394;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.669;QD=0.82;ReadPosRankSum=-0.112;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:174,43:0.20:217
chr18	60027005	rs6567270	T	A	180.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:9,8:0.47:17
chr18	60027149	rs6567271	T	A	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.81;ReadPosRankSum=-1.612;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:85,99:0.54:184
chr18	60027171	rs6567272	C	T	2271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.82;ReadPosRankSum=0.247;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:98,112:0.53:210
chr18	60027241	rs1805034	C	T	2273.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:74,109:0.60:183
chr18	60027361	rs9653064	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:22,35:0.61:57
chr18	60036083	rs8092336	A	G	6024.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr18	60051888	rs11878130	G	A	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr18	60051942	rs77857469	G	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:50,88:0.64:138
chr18	60190786	.	C	CCCG	166.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.65;MQRankSum=1.242;QD=20.84;ReadPosRankSum=0.619;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr18	60191428	rs7229802	G	A	4708.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:128,214:0.63:342
chr18	60227833	rs17070100	T	C	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:76,50:0.40:126
chr18	60232405	rs4940561	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	60237388	rs8096750	A	G	4504.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr18	60241699	rs34413962	T	C	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:155,93:0.38:248
chr18	60241732	rs3744926	C	T	4119.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:106,183:0.63:289
chr18	60243876	rs11557713	G	A	3528.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=0.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.64;ReadPosRankSum=-1.295;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:86,155:0.64:241
chr18	60382986	.	CCGGCGGCCGCCGCTGCGGCAGCAGCAGCAGCAGCGGCGGCCG	C	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=0.393;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chr18	60491364	rs34639796	CA	C	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.198;QD=1.61;ReadPosRankSum=0.657;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:52,23:0.31:75
chr18	60562298	rs624821	A	T	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	60562957	rs144369901	TA	T	360.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chr18	60572437	rs3217528	GT	G	1852.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.464;QD=17.15;ReadPosRankSum=0.625;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:6,102:0.94:108
chr18	60582301	rs182243606	T	C	697.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,40:0.37:109
chr18	60985879	rs1801018	T	C	10061.77	.	AC=1;AF=0.500;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	0/1:358,491:0.58:849
chr18	61022634	rs1809319	T	C	3156.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:58,137:0.70:195
chr18	61022791	rs2003149	C	T	1588.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:37,70:0.65:107
chr18	61034175	rs427065	A	G	1273.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.638;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=10.239;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.74;ReadPosRankSum=-0.067;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:154,68:0.31:222
chr18	61034420	rs402348	T	G	1098.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chr18	61060873	rs898890	G	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=-1.026;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr18	61066463	rs2276317	A	G	1065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-0.472;SOR=0.537;set=HC	GT:AD:AF:DP	0/1:87,59:0.40:146
chr18	61067959	rs952245	T	C	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=4.950;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.02;ReadPosRankSum=0.054;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:103,59:0.36:162
chr18	61078888	rs11383277	G	GT	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.38;MQRankSum=1.227;QD=4.71;ReadPosRankSum=-2.093;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr18	61154043	rs34587228	T	C	1565.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	61154388	rs2271254	C	T	553.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	61156606	rs12454742	G	C	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr18	61160287	rs2289519	T	C	10357.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr18	61160385	rs2289521	T	C	4945.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr18	61166269	rs56208842	C	T	584.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=3.425;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=-3.599;QD=19.49;ReadPosRankSum=0.092;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr18	61166273	rs12458191	C	T	1108.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.859;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.48;MQRankSum=0.344;QD=27.72;ReadPosRankSum=1.561;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:1,39:0.97:40
chr18	61166280	.	G	GTATATA,GTATATATA	1325.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.43;QD=28.82;SOR=1.781;set=HC	GT:AD:AF:DP	1/2:7,23,16:0.50,0.35:46
chr18	61170467	rs1840557	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	61170500	rs1455557	T	C	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr18	61170721	rs1455556	T	C	7433.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr18	61170782	rs1455555	A	G	7987.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr18	61170925	rs8093128	T	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr18	61225801	rs7244584	C	T	4090.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr18	61226694	rs11152391	G	A	657.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	61226740	rs12103954	G	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr18	61228248	rs9676250	T	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	61231143	rs33927218	AAAAAT	A	500.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=3.303;MLEAC=1;MLEAF=0.500;MQ=63.08;MQRankSum=-0.420;QD=8.78;ReadPosRankSum=-1.257;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:20,37:0.65:57
chr18	61231417	rs9957786	A	G	4394.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr18	61233739	rs2077549	T	C	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr18	61254329	.	T	C	1493.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.724;ClippingRankSum=0.000;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.98;ReadPosRankSum=-0.889;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:133,81:0.38:214
chr18	61254525	rs3216123	A	AT	3151.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr18	61256117	rs77936810	GC	G	1088.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=36.29;SOR=2.621;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	61261515	rs11152394	T	C	8173.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr18	61261540	rs11152395	T	C	9129.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr18	61261565	rs11152396	C	G	8124.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	61264298	rs1020694	G	A	5924.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr18	61264468	rs1020693	C	T	16962.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,632:1.00:632
chr18	61271065	rs7229459	G	A	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr18	61308895	rs2518061	A	G	7642.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr18	61325905	rs7228687	T	G	913.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=24.70;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	61326505	rs8089032	T	A	5759.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr18	61326597	rs8085479	A	C	15098.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.07;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr18	61326602	rs8085482	A	G	15353.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=45.29;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr18	61326609	rs8089201	T	G	14971.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=44.69;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,335:1.00:335
chr18	61326628	rs11370831	A	AT	9802.73	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr18	61377579	rs1395268	A	C	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	61383181	rs8087185	A	C	419.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	61387993	rs12607732	T	C	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr18	61390316	rs1395265	C	A	1407.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:183,83:0.31:266
chr18	61390332	rs1395266	C	T	1417.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:176,84:0.32:260
chr18	61390361	rs1395267	T	C	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:174,76:0.30:250
chr18	61390570	rs953695	T	G	1631.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:144,90:0.38:234
chr18	61390649	rs953696	C	T	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:76,52:0.41:128
chr18	61391228	rs2089318	T	C	774.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.473;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:135,51:0.27:186
chr18	61391323	rs147160513	CTCT	C	918.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=6.283;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.21;ReadPosRankSum=-0.355;SOR=1.524;set=HC	GT:AD:AF:DP	0/1:60,30:0.33:90
chr18	61391449	rs144614464	C	CTCTTCT	819.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=1.523;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:29,22:0.43:51
chr18	61391505	rs144622175	CTCT	C	1186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.094;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=6.678;QD=8.07;ReadPosRankSum=-0.788;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:83,64:0.44:147
chr18	61391697	rs12326861	A	G	1057.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:83,55:0.40:138
chr18	61393442	rs9965604	T	C	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chr18	61393644	rs1893563	T	A	552.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.888;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.122;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:45,29:0.39:74
chr18	61394297	rs4941217	C	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:55,79:0.59:134
chr18	61394300	rs8097334	C	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.71;ReadPosRankSum=-2.190;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:83,58:0.41:141
chr18	61394352	rs9954345	C	T	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:73,119:0.62:192
chr18	61394403	rs8098025	A	G	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:108,62:0.36:170
chr18	61394522	rs6567386	A	G	254.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:21,13:0.38:34
chr18	61471529	rs61735186	C	T	587.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.515;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.88;ReadPosRankSum=-0.366;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:65,35:0.35:100
chr18	61602360	rs35453062	G	A	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:200,94:0.32:294
chr18	61650865	rs11537989	G	A	7570.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr18	61654463	rs3826616	A	G	5130.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr18	63430340	rs2276190	G	A	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.230;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.86;ReadPosRankSum=1.762;SOR=0.973;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr18	63430344	rs2276191	T	G	535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.13;ReadPosRankSum=1.979;SOR=1.009;set=HC	GT:AD:AF:DP	0/1:14,14:0.50:28
chr18	63477317	rs11332924	GA	G	601.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:11,40:0.78:51
chr18	63481575	.	T	C	342.77	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chr18	63489378	rs8097752	C	T	7884.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr18	63511410	rs145270355	G	GATTTATATATAT	390.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.45;QD=48.84;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr18	63526444	rs117028776	C	A	234.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:9,11:0.55:20
chr18	63530016	rs2291343	A	G	11309.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:2,429:1.00:431
chr18	63547669	.	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.675;ClippingRankSum=0.000;DP=153;ExcessHet=3.0103;FS=0.900;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.71;ReadPosRankSum=-0.780;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:131,21:0.14:152
chr18	64211251	rs72954429	C	T	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr18	64239196	rs10516000	T	C	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr18	64748928	rs11423865	C	CT	3231.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:4,142:0.97:146
chr18	65178103	rs112210097	G	GCA	316.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:8,12:0.60:20
chr18	65179829	rs2279269	G	A	1205.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:163,70:0.30:233
chr18	66367607	rs72955911	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr18	66503897	.	CAA	C	422.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-0.213;QD=20.13;ReadPosRankSum=2.138;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr18	66504093	rs485613	A	C	9124.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:1,341:1.00:342
chr18	66504351	rs637051	G	A	2710.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:81,120:0.60:201
chr18	66504459	rs572020	A	T	4248.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr18	66511207	rs33926572	TA	T	150.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr18	66513174	rs117697963	G	A	92.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr18	66513256	rs8088575	A	G	153.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr18	66513471	rs1954878	C	G	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	66513615	rs2187094	A	G	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:52,95:0.65:147
chr18	66513662	rs1977942	T	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=1.708;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:144,54:0.27:198
chr18	66513749	rs1970675	T	C	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:103,48:0.32:151
chr18	66513769	rs1539895	A	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:86,38:0.31:124
chr18	66513787	rs67139927	A	G	1263.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr18	66513840	rs1970674	C	A	255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=5.418;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.82;ReadPosRankSum=-2.029;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr18	66513846	rs1970673	C	T	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=5.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=0.064;SOR=0.095;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr18	66542108	rs2004027	T	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chr18	66564393	rs117509554	G	A	53.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:13,4:0.24:17
chr18	66564514	rs117721069	G	C	513.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:36,24:0.40:60
chr18	66564751	rs116988359	C	A	3666.77	.	AC=1;AF=0.500;AN=2;DB;DP=581;set=Intersection	GT:AD:AF:DP	0/1:373,204:0.35:577
chr18	66678131	rs7234663	A	G	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr18	66678453	rs930164	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	67345034	rs8099030	T	C	2883.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr18	67345250	rs8084618	C	T	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,12:0.50:24
chr18	67365577	rs7241894	G	A	3777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.090;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=1.204;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:96,174:0.64:270
chr18	67365585	rs4581806	A	G	11343.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.01;SOR=1.019;set=HC	GT:AD:AF:DP	1/1:0,315:1.00:315
chr18	67365668	rs4426448	A	G	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:305,153:0.33:458
chr18	67531642	rs763361	T	C	2707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.24;ReadPosRankSum=1.548;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:278,156:0.36:434
chr18	67531797	rs763362	A	G	791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.429;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.66;ReadPosRankSum=-0.237;SOR=0.853;set=HC	GT:AD:AF:DP	0/1:22,32:0.59:54
chr18	67540368	rs1788101	T	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.320;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.62;ReadPosRankSum=-0.487;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:32,65:0.67:97
chr18	67563309	rs1630425	A	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr18	67563348	rs1788115	T	C	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr18	67613926	rs10782036	A	G	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr18	67613944	rs57226213	T	TA	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.249;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.046;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.587;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr18	67614674	rs3214811	T	TA	1163.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.72;ReadPosRankSum=-0.026;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:2,57:0.97:59
chr18	67718688	rs4891392	A	G	7033.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr18	67724802	rs12968602	A	G	458.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	67726975	rs11876398	A	G	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	67727003	rs1435086	A	T	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr18	67733234	rs11151561	T	A	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr18	67741117	rs1369292	G	A	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr18	67741309	rs1369293	G	A	2078.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr18	67742801	rs285228	G	A	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr18	67759487	rs147682186	T	C	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.952;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.40;ReadPosRankSum=-0.287;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:109,56:0.34:165
chr18	67759549	rs4891394	C	A	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr18	67809647	rs11665653	A	C	1123.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=5.441;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.76;ReadPosRankSum=1.586;SOR=1.947;set=HC	GT:AD:AF:DP	1/1:1,41:0.98:42
chr18	67809647	.	A	AC	297	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=14;HapScore=3;MGOF=12;MMLQ=25;MQ=60.0;NF=0;NR=9;PP=297;QD=33.3333333333;SC=AAAAAAAAAAACCAAAATTAC;SbPval=1.0;Source=Platypus;TC=30;TCF=0;TCR=30;TR=9;WE=67809655;WS=67809622;set=Platypus	GT:AD:AF:DP	1/1:21,9:0.30:30
chr18	67812773	rs11662011	G	A	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	67817744	rs12606964	T	C	618.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	67817837	rs117843366	G	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:53,40:0.43:93
chr18	67818046	rs12604751	C	T	626.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr18	67860412	.	C	CA	264.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.997;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:34,29:0.46:63
chr18	67860719	rs283250	T	C	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr18	67863850	rs74941514	T	TCTC	4279.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:2,159:0.99:161
chr18	67871343	rs3911730	A	C	5977.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:2,231:0.99:233
chr18	67872713	rs75761892	C	T	675.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:45,28:0.38:73
chr18	67992279	rs2231562	G	A	5064.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:110,221:0.67:331
chr18	70209321	rs7237888	C	A	3466.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr18	70416119	rs11872857	T	C	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr18	70416367	rs35742923	C	CA	2205.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,91:0.99:92
chr18	70417396	rs922999	C	T	2984.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr18	70423192	rs7244244	T	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr18	70532840	rs10164255	T	G	830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=0.332;SOR=0.876;set=HC	GT:AD:AF:DP	0/1:71,46:0.39:117
chr18	70532977	rs10163845	A	G	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:23,7:0.23:30
chr18	70534387	rs111959645	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr18	70534401	rs6566677	G	T	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:26,18:0.41:44
chr18	71442075	rs11872509	T	C	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.231;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr18	71442075	.	TGG	CGT	77	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=2;HapScore=2;MGOF=2;MMLQ=21;MQ=60.0;NF=2;NR=1;PP=77;QD=43.4892916207;SC=AAAAAGAAGTTGGAAGATGCA;SbPval=0.66;Source=Platypus;TC=13;TCF=9;TCR=4;TR=3;WE=71442085;WS=71442065;set=Platypus	GT:AD:AF:DP	1/0:10,3:0.23:13
chr18	71442077	rs11875403	G	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.22;ReadPosRankSum=-1.231;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:11,6:0.35:17
chr18	71749322	rs112618061	C	T	3790.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:92,173:0.65:265
chr18	71920966	rs1790871	T	C	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr18	71923904	rs150177820	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:22,25:0.53:47
chr18	71927852	rs7238784	G	T	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr18	71928150	rs7238987	C	T	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr18	71930734	rs2032262	T	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr18	71930834	rs144732931	C	CTG	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	71930844	rs2032264	C	G	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	71959075	rs76198400	G	A	4952.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	71987895	rs28701630	G	A	493.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr18	72021145	rs8093952	T	A	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr18	72021717	rs12606060	T	C	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	72109174	rs1559805	C	A	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr18	72113730	rs3861310	A	G	2288.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr18	72114455	rs8087020	C	T	10739.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr18	72167124	rs3764509	C	G	2168.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	72168608	rs2303463	G	A	816.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:17,35:0.67:52
chr18	72176083	rs2278161	T	C	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:67,44:0.40:111
chr18	72177989	rs79359709	G	T	77.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=4.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.55;ReadPosRankSum=0.463;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:9,5:0.36:14
chr18	72179579	rs734559	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:103,56:0.35:159
chr18	72183695	rs2241509	T	A	2033.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr18	72185688	rs735076	G	A	988.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:161,60:0.27:221
chr18	72186059	rs733062	G	A	2367.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr18	72186175	rs5826329	T	TC	2337.73	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:148,101:0.41:249
chr18	72201918	rs11151964	G	A	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:83,41:0.33:124
chr18	72223591	rs10663835	G	GTGC	7527.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:7,174:0.96:181
chr18	72226455	rs12605490	A	T	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:40,13:0.25:53
chr18	72226539	rs12607796	T	C	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.60;ReadPosRankSum=0.593;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:128,54:0.30:182
chr18	72226809	rs7239132	C	A	137.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chr18	72228124	rs4263028	A	G	8266.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.59;ReadPosRankSum=-0.131;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:2,321:0.99:323
chr18	72229167	rs9319909	C	G	1382.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=1.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=-0.263;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:45,63:0.58:108
chr18	72229212	rs9967490	G	A	2376.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.210;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:68,111:0.62:179
chr18	72234337	rs4891562	A	C	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr18	72234635	rs12960862	C	T	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr18	72238283	rs4892244	A	G	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr18	72245660	rs141377822	A	AG	1660.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:57,56:0.50:113
chr18	72247278	rs4892247	C	T	973.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr18	72250762	rs11659237	T	C	6103.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr18	72264397	rs7505285	A	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr18	72264406	rs7505289	A	G	3029.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.50;SOR=2.271;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr18	72264473	rs7505334	C	T	5299.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr18	72343008	rs7243081	T	C	6026.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr18	72343156	rs75994611	A	G	1837.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:237,111:0.32:348
chr18	72493314	rs7228438	G	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr18	72589058	rs2303440	T	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr18	72593097	rs75375525	G	A	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr18	72593118	rs2628126	C	T	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr18	72776121	rs3744913	G	A	9689.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr18	72997677	rs3826609	C	T	7531.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr18	72998004	rs3744908	T	C	11656.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr18	72998268	rs3744909	T	C	9143.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr18	72998886	rs3809997	T	C	6828.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr18	72999359	rs55679337	T	C	6309.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr18	73130653	rs3214645	G	GTT	1409.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=29.37;SOR=3.675;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr18	73139335	rs7235563	C	G	4819.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,185:1.00:185
chr18	74082584	rs9676093	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:52,30:0.37:82
chr18	74082655	rs690035	G	C	202.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr18	74090957	rs56087742	CG	C	5875.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr18	74091718	rs17059302	G	A	6240.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:192,288:0.60:480
chr18	74092366	rs12970367	G	A	777.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:15,34:0.69:49
chr18	74153146	rs59762437	G	A	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr18	74207575	rs3813102	C	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:16,19:0.54:35
chr18	74208485	rs3841258	CG	C	2988.73	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr18	74208573	rs4891164	G	A	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr18	74536101	rs3764473	C	T	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr18	74591992	rs5826483	G	GT	769.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:5,44:0.90:49
chr18	74611127	rs608433	A	G	8908.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr18	74622529	rs684192	A	G	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr18	74627577	rs537945	C	T	371.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:13,16:0.55:29
chr18	74637173	rs183899517	C	T	289.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:36,17:0.32:53
chr18	74648107	rs34003753	CGT	C	1928.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:30,53:0.64:83
chr18	74648536	rs630229	G	T	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr18	74671768	rs470403	T	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chr18	74680114	rs17575711	T	C	335.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:35,19:0.35:54
chr18	74680208	rs73968242	C	T	1626.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chr18	74680259	rs657066	C	T	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr18	74680369	rs470774	C	T	1991.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr18	74692336	rs9199	A	G	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,33:0.38:88
chr18	74702113	rs35688328	A	AT	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=2.042;QD=2.06;ReadPosRankSum=0.378;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr18	74702864	rs9676113	G	A	3717.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr18	74702999	rs9676140	C	G	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr18	74721697	rs3752070	G	A	847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.74;ReadPosRankSum=1.524;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:41,46:0.53:87
chr18	74778515	rs7241461	G	T	4247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.813;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=0.408;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.87;ReadPosRankSum=1.132;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:132,198:0.60:330
chr18	74781086	rs58502912	A	C	3314.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:120,161:0.57:281
chr18	74817010	rs9319656	A	ATT	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=43.23;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	74817011	rs11412053	A	AC	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=43.23;SOR=4.712;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr18	74962447	rs13306375	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr18	74962645	rs5374	T	C	10413.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr18	74968255	rs114829154	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr18	74980809	rs5376	G	A	9341.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr18	76752795	.	CG	C	31.71	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr18	76753491	rs7233194	C	T	6755.77	.	AC=1;AF=0.500;AN=2;DB;DP=906;set=Intersection	GT:AD:AF:DP	0/1:545,358:0.40:903
chr18	76753588	rs7240860	A	G	12700.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr18	76753768	rs2447437	C	G	13827.77	.	AC=2;AF=1.00;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr18	76754466	rs2472644	C	T	7382.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr18	77067000	rs3760541	T	G	9548.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr18	77107934	rs9965202	C	T	3923.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr18	77108248	rs148971054	GAAAAA	G,GA	3774.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.53;QD=45.48;SOR=1.688;set=HC	GT:AD:AF:DP	1/2:0,60,23:0.72,0.28:83
chr18	77108253	rs77791799	A	G	34.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.097;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=-1.270;QD=0.42;ReadPosRankSum=0.356;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr18	77108254	rs201867566	A	G	522.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.747;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.851;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=2.448;QD=6.30;ReadPosRankSum=-0.365;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:40,43:0.52:83
chr18	77137202	rs1110784	A	G	7346.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr18	77156171	rs74183647	G	C	299.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr18	77156449	rs58346397	G	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.57;SOR=4.091;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr18	77160256	.	G	GGGGGGC	818.73	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr18	77160367	.	C	CGCCCCG	6469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DP=229;ExcessHet=3.0103;FS=1.114;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.27;ReadPosRankSum=0.160;SOR=0.591;set=HC	GT:AD:AF:DP	0/1:73,148:0.67:221
chr18	77170006	rs182507	C	T	634.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr18	77171061	rs2230112	T	G	7930.77	.	AC=1;AF=0.500;AN=2;DB;DP=1191;set=Intersection	GT:AD:AF:DP	0/1:749,440:0.37:1189
chr18	77210902	rs680802	C	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr18	77221207	rs2304738	C	A	820.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:78,43:0.36:121
chr18	77221264	rs2304739	C	T	1501.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.604;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.89;ReadPosRankSum=-0.535;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:162,93:0.36:255
chr18	77221278	rs56112793	G	A	1890.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=2.055;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=-0.954;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:172,107:0.38:279
chr18	77221420	.	C	CTGGGGTCTGCTGGAGCCACTGCGGGTCCCCAGAGCCTGGGAGGG	804.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=2.517;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.73;ReadPosRankSum=1.252;SOR=1.123;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr18	77227476	rs25656	A	G	1645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.633;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=-1.514;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:174,99:0.36:273
chr18	77246406	rs754093	T	G	9110.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr18	77246978	rs754096	G	A	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,249:1.00:250
chr18	77287385	rs451691	T	C	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.10;ReadPosRankSum=-1.059;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr18	77402305	rs56014953	C	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr18	77420703	rs868678	C	G	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr18	77439532	rs3826573	T	C	3678.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr18	77439844	rs56006341	G	T	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.64;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr18	77440128	rs17855830	T	G	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr18	77455871	rs558700	C	T	2618.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr18	77458037	rs2242174	T	C	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr18	77513721	rs626169	T	C	8775.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr18	77623611	rs62103176	G	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr18	77623691	rs71338073	G	GGGC	525.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,14:0.52:27
chr18	77659553	rs75339189	C	T	4486.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:452,253:0.36:705
chr18	77663940	rs3744881	G	A	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr18	77694128	rs3837882	TA	T	1280.73	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:26,88:0.77:114
chr18	77694168	rs2277725	T	G	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr18	77710715	rs113759560	C	T	3462.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:398,194:0.33:592
chr18	77726544	.	G	GA	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=0.878;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chr18	77728045	rs2298644	C	T	2384.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr18	77728135	rs2298645	G	T	4120.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr18	77730410	rs118028499	C	T	3055.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	0/1:345,174:0.34:519
chr18	77736735	rs4799116	T	C	12425.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.731;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr18	77737714	.	T	TA	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.731;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=1.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.67;ReadPosRankSum=0.701;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr18	77797321	rs748337	C	T	1246.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr18	77805949	rs3744873	A	C	7181.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr18	77894844	rs3744877	G	A	13607.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr18	77926862	rs72978384	G	A	6945.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr18	77927028	rs1879105	A	G	2671.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	282753	rs1138439	G	A	5126.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	287970	.	G	GT	1041.73	.	AC=2;AF=1.00;AN=2;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	290947	rs8111051	C	A	337.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	307037	rs72982402	C	T	1190.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	311787	rs111820777	C	G	4147.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	312026	rs60667274	C	T	4516.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:2,162:0.99:164
chr19	312141	.	AGT	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=1;HapScore=1;MGOF=29;MMLQ=23;MQ=58.53;NF=55;NR=34;PP=2947;QD=20;SC=AACGGTCAGCAGTGCCCAGGG;SbPval=0.64;Source=Platypus;TC=96;TCF=57;TCR=39;TR=89;WE=312151;WS=312131;set=Platypus	GT:AD:AF:DP	1/1:7,89:0.93:96
chr19	312164	.	G	A	2496	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=37;MMLQ=23;MQ=59.69;NF=82;NR=60;PP=2496;QD=17.8223324827;SC=GGGCCGCAGCGGAAGGAAGGC;SbPval=0.53;Source=Platypus;TC=142;TCF=82;TCR=60;TR=142;WE=312172;WS=312154;set=Platypus	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	312179	.	A	G	2954	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=2;HapScore=1;MGOF=34;MMLQ=23;MQ=59.75;NF=100;NR=73;PP=2954;QD=20;SC=GAAGGCCCAGACCGCTGCTCA;SbPval=0.53;Source=Platypus;TC=174;TCF=101;TCR=73;TR=173;WE=312187;WS=312169;set=Platypus	GT:AD:AF:DP	1/1:1,173:0.99:174
chr19	312311	rs60199290	G	C	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.49;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	312311	.	GCA	CCG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=2;HapScore=1;MGOF=5;MMLQ=23;MQ=60.0;NF=87;NR=98;PP=2947;QD=20;SC=TGGGCTCAGCGCAGGAGCCGA;SbPval=0.43;Source=Platypus;TC=195;TCF=88;TCR=107;TR=185;WE=312321;WS=312301;set=Platypus	GT:AD:AF:DP	1/1:10,185:0.95:195
chr19	312313	rs58749922	A	G	9742.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.90;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	325514	rs73916894	A	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	327182	rs7256086	C	T	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.900;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	327260	.	T	TA	371.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.548;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.26;ReadPosRankSum=0.542;SOR=1.426;set=HC	GT:AD:AF:DP	0/1:15,30:0.67:45
chr19	327323	rs7250846	T	C	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	327821	rs7257040	C	A	1729.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	328028	rs57488274	C	T	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	334474	rs11084956	T	G	9700.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr19	336279	rs11879189	T	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	367313	rs585487	G	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	371365	rs72228674	TGG	T	180.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.094;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.142;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=0.695;QD=2.35;ReadPosRankSum=-2.140;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr19	371367	.	GGGGT	G	39.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.318;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-3.818;QD=0.48;ReadPosRankSum=-0.630;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:73,10:0.12:83
chr19	371369	rs644609	G	T	1495.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=59.87;MQRankSum=2.136;QD=19.43;ReadPosRankSum=2.345;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:24,53:0.69:77
chr19	371396	rs644644	G	C	3683.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.80;QD=44.38;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	372551	rs652081	A	G	4256.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.99;QD=25.19;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	374453	rs3815960	T	C	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	374492	rs10410345	G	C	2749.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	374547	rs648770	T	C	876.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	407900	rs10411998	A	G	5413.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	418769	rs12981152	G	A	1000.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	422534	rs12984753	G	A	2081.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.03;SOR=2.215;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	422543	rs2287958	G	A	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.81;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	422555	rs2287957	G	A	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	425182	rs61735134	G	A	2602.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	439055	rs112380345	G	A	6125.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.49;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	460475	rs12980271	G	C	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.52;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	460668	rs189741717	C	G	145.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=20.83;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	460729	.	G	A	65.28	.	AC=2;AF=1.00;AN=2;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	463810	rs60512152	GC	G	1134.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	464310	rs34551779	A	G	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,76:0.99:77
chr19	496652	rs114840310	A	G	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.13;QD=29.83;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	498212	rs12461640	A	C	6851.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	498524	rs2302217	A	G	10768.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr19	501743	.	T	TCTCCCGACACCACCTCCCAGGAGCCTCCCGACACCACCTCCCAGGAGC	12017.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=2.302;MLEAC=2;MLEAF=1.000;MQ=57.88;MQRankSum=-0.763;QD=71.11;ReadPosRankSum=-0.220;SOR=0.684;set=HC	GT:AD:AF:DP	1/1:3,166:0.98:169
chr19	501900	rs3745925	C	A	5496.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.35;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	504732	rs373642778	A	T	968.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	536067	.	CGTCCTCGTCCTTCCGGGACCCGAGGCGCTGGGAGCCTCAT	C	5693.73	.	AC=2;AF=1.00;AN=2;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	544037	rs16990734	C	T	802.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	544315	rs3760874	A	G	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	547224	rs4919846	A	G	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	547483	rs2070794	G	A	1341.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	548865	rs12972174	C	T	388.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	549509	rs12459388	A	G	1161.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	549595	rs1599883	T	C	2382.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	549678	rs1599882	A	G	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:2,253:0.99:255
chr19	549725	rs58562291	T	C	11680.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	549728	rs58601458	C	G	11553.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	580163	rs5826703	GA	G	1064.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	580810	rs10422916	T	C	4128.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	582253	rs4919862	T	C	4258.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	582775	rs8637	A	G	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	603513	rs4919815	C	T	1719.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	604022	rs10409268	A	G	1652.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.02;QD=28.50;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	605171	rs12981860	T	C	1409.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	613554	.	G	GGGGGCTGGGGCC	381.73	.	AC=2;AF=1.00;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	613898	rs1054786	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	614028	.	G	GGGGGCGTGGCCGGGGCGGGTGCCCTGGCGGGGGA	820.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=68.39;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	616509	rs55810748	G	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.41;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	617195	rs11670098	C	T	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.64;SOR=1.721;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	617205	rs2072122	T	C	2008.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.74;SOR=1.814;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	617614	rs41551212	G	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	617963	rs41546612	T	G	2413.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	619021	rs14155	G	C	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	619574	rs10853990	T	G	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	619772	rs11669381	G	C	2660.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr19	621020	rs111437074	T	C	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.75;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	621063	rs76890343	A	G	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.11;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	621070	rs77809401	G	A	2342.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.20;SOR=1.938;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	621712	rs2238547	A	G	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	622000	rs2238548	C	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	622336	rs2238549	T	G	1872.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	623003	rs2017580	G	A	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	623080	rs41563114	A	AT	1282.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;MQ=61.16;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	625198	rs1056766	A	G	4695.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	629438	rs2283576	G	C	212.78	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	629503	rs2283577	G	A	607.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.31;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	629846	rs11550305	G	A	1975.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	633381	rs11669858	A	G	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr19	633529	.	G	GGCGCCGCCGCCGCCGCCGCC	8060.73	.	AC=2;AF=1.00;AN=2;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	641215	rs7246140	T	C	2921.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	643103	.	GG	AT	991	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5001;HP=2;HapScore=1;MGOF=24;MMLQ=28;MQ=59.84;NF=22;NR=1;PP=991;QD=45.4116467331;SC=CGTCGTGGTCGGGAGGGGACT;SbPval=0.94;Source=Platypus;TC=32;TCF=28;TCR=4;TR=23;WE=643112;WS=643094;set=Platypus	GT:AD:AF:DP	1/0:9,23:0.72:32
chr19	643104	.	G	GGAGGGGACTCGTGGTCTGGGGCAGGGGGGGCTCCTCGTGTCTGTCGTGGTCAT	1506.73	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=502.24;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	646891	rs10403235	G	A	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	647039	rs2074460	T	C	2208.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	649110	rs2040736	G	C	203.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	652206	rs8102953	G	A	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr19	652948	rs10153505	T	G	6198.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr19	687142	rs8102982	G	A	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	691909	rs4375794	T	C	5358.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	725939	rs3787017	C	T	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	726910	rs28452452	G	A	889.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	727225	.	C	CAACCCT	3616.73	.	AC=2;AF=1.00;AN=2;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	727237	.	C	CGACCCT	3612.73	.	AC=2;AF=1.00;AN=2;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	727261	.	CAACCT	C	2974	.	AC=1;AF=0.500;AN=2;BRF=0.43;FR=0.5000;HP=3;HapScore=1;MGOF=71;MMLQ=23;MQ=50.93;NF=2;NR=67;PP=2974;QD=20;SC=ACCCTGACCCCAACCTGACCC;SbPval=0.99;Source=Platypus;TC=109;TCF=12;TCR=97;TR=69;WE=727273;WS=727251;set=Platypus	GT:AD:AF:DP	0/1:40,69:0.63:109
chr19	727544	rs3746168	C	G	32350.77	.	AC=2;AF=1.00;AN=2;DB;DP=742;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,740:1.00:740
chr19	727550	rs3746169	T	C	31641.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.943;set=HC	GT:AD:AF:DP	1/1:0,696:1.00:696
chr19	727552	rs3746170	C	T	31319.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.46;SOR=0.942;set=HC	GT:AD:AF:DP	1/1:0,689:1.00:689
chr19	740560	rs10419493	T	C	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	756985	rs8110536	T	G	6267.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	757399	rs3746172	A	C	8423.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	757412	rs3746173	A	G	8744.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	804142	rs61757783	A	G	10495.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	808577	rs148751202	C	T	6514.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	814452	rs3746138	C	T	12430.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr19	827975	rs649411	T	C	2373.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	829568	rs12460890	C	T	8760.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr19	829723	rs678976	A	G	13413.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	829824	rs6510980	C	T	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	830621	rs653847	A	C	4951.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	830854	rs595844	T	C	19921.77	.	AC=2;AF=1.00;AN=2;DB;DP=764;set=Intersection	GT:AD:AF:DP	1/1:0,762:1.00:762
chr19	841100	rs62132296	C	T	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	843692	rs2301879	A	G	3671.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	852594	rs375744094	AGG	A	131.25	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr19	855966	rs17216649	C	A	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,137:0.99:138
chr19	859831	rs8107095	T	G	3212.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	860852	rs1629038	G	C	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	861102	rs1626564	C	A	3175.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr19	861593	rs1683563	C	G	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	863388	rs1135146	C	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	868751	rs78700964	C	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	871033	rs72984029	G	A	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	871222	rs8100258	G	A	3532.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	871447	rs1683570	A	G	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	872089	rs72984031	A	G	7538.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:2,288:0.99:290
chr19	885818	rs1060442	A	G	8206.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.970;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	899567	rs2930885	C	G	6811.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	900789	rs2930886	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	901955	rs4343405	C	T	7231.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	920170	rs350131	G	T	1098.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	920642	rs350132	T	A	4713.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	929678	rs3826948	G	A	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	929753	rs1799595	A	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	960187	rs1637993	G	C	8806.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr19	965043	rs12608658	T	C	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	1000724	.	G	A	847.77	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.22;SOR=1.148;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	1003070	rs116904494	G	A	743.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	1003172	rs2240154	C	T	2401.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	1011215	rs2240160	G	A	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	1032871	rs4630683	A	G	428.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.82;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	1036552	rs2304262	T	C	29527.77	.	AC=2;AF=1.00;AN=2;DB;DP=1116;set=Intersection	GT:AD:AF:DP	1/1:0,1112:1.00:1112
chr19	1037645	.	AC	A	1359	.	AC=1;AF=0.500;AN=2;BRF=0.61;FR=0.5000;HP=3;HapScore=4;MGOF=264;MMLQ=23;MQ=43.28;NF=4;NR=0;PP=1359;QD=346.5;SC=GGCTCCCGGGACCCGGCGGCA;SbPval=0.06;Source=Platypus;TC=19;TCF=9;TCR=10;TR=4;WE=1037653;WS=1037630;set=Platypus	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	1037715	rs200177867	T	C	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.68;MQRankSum=-6.606;QD=8.18;ReadPosRankSum=-0.104;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr19	1037716	rs201532581	G	A	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQRankSum=-6.774;QD=7.94;ReadPosRankSum=-0.504;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr19	1037718	rs199741851	G	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-6.832;QD=7.82;ReadPosRankSum=-0.369;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:51,17:0.25:68
chr19	1037731	rs75808449	C	T	504.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-7.331;QD=6.56;ReadPosRankSum=0.680;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:60,17:0.22:77
chr19	1037749	rs77454210	G	A	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.124;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-7.111;QD=5.35;ReadPosRankSum=1.368;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:63,14:0.18:77
chr19	1037756	rs77830704	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.181;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.182;MLEAC=1;MLEAF=0.500;MQ=55.82;MQRankSum=-7.438;QD=4.72;ReadPosRankSum=1.966;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr19	1037766	rs78386506	G	A	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.943;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=1.158;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-7.386;QD=4.31;ReadPosRankSum=1.553;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:63,13:0.17:76
chr19	1037781	rs75676484	C	A	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.051;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.95;MQRankSum=-7.438;QD=4.22;ReadPosRankSum=1.082;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:64,13:0.17:77
chr19	1037791	rs75577125	C	T	327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.585;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=1.228;MLEAC=1;MLEAF=0.500;MQ=56.61;MQRankSum=-8.070;QD=4.43;ReadPosRankSum=0.792;SOR=0.978;set=HC	GT:AD:AF:DP	0/1:62,12:0.16:74
chr19	1037801	rs78797154	A	C	339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.939;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.236;MLEAC=1;MLEAF=0.500;MQ=58.09;MQRankSum=-7.836;QD=4.85;ReadPosRankSum=-0.094;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr19	1037807	rs78288829	G	A	372.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.566;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=9.260;MLEAC=1;MLEAF=0.500;MQ=58.08;MQRankSum=-7.838;QD=5.33;ReadPosRankSum=-0.312;SOR=1.964;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr19	1037810	rs80117328	G	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.357;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=9.098;MLEAC=1;MLEAF=0.500;MQ=58.05;MQRankSum=-7.778;QD=4.36;ReadPosRankSum=-0.404;SOR=1.972;set=HC	GT:AD:AF:DP	0/1:57,12:0.17:69
chr19	1037812	rs79770201	T	C	300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=7.103;MLEAC=1;MLEAF=0.500;MQ=57.94;MQRankSum=-7.451;QD=4.70;ReadPosRankSum=-0.392;SOR=1.790;set=HC	GT:AD:AF:DP	0/1:53,11:0.17:64
chr19	1037828	rs75602230	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.666;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=6.975;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-7.263;QD=4.64;ReadPosRankSum=0.178;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:50,11:0.18:61
chr19	1037833	rs80286396	C	A	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.022;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.990;MLEAC=1;MLEAF=0.500;MQ=57.87;MQRankSum=-7.326;QD=4.51;ReadPosRankSum=0.258;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:51,11:0.18:62
chr19	1037842	rs79061930	G	T	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.987;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=4.966;MLEAC=1;MLEAF=0.500;MQ=57.55;MQRankSum=-6.803;QD=5.40;ReadPosRankSum=-0.506;SOR=1.584;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr19	1037844	rs74612849	A	G	303.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.448;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.968;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-6.666;QD=5.84;ReadPosRankSum=-0.797;SOR=1.574;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr19	1037848	rs76751843	G	A	315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.095;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=5.562;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-6.260;QD=6.72;ReadPosRankSum=-0.439;SOR=1.751;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr19	1037856	rs76549406	T	C	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.176;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=11.516;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-5.495;QD=3.12;ReadPosRankSum=0.517;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:33,6:0.15:39
chr19	1037869	rs75014171	C	T	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-5.414;QD=1.90;ReadPosRankSum=1.360;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr19	1037871	rs78251590	C	A	58.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.576;MLEAC=1;MLEAF=0.500;MQ=57.77;MQRankSum=-5.414;QD=1.90;ReadPosRankSum=1.360;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:27,4:0.13:31
chr19	1037932	rs3848639	G	C	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	1042809	rs3764645	A	G	2814.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	1043864	rs4622634	G	C	4462.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.985;set=HC	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	1044753	rs3764648	T	C	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	1047002	rs3752234	A	G	5910.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	1047161	rs3752237	A	G	12520.77	.	AC=2;AF=1.00;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr19	1048807	.	C	CA	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.427;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.37;MQRankSum=0.000;QD=3.27;ReadPosRankSum=1.297;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:37,21:0.36:58
chr19	1049012	rs4147912	A	C	919.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	1049305	rs4147915	C	A	7502.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	1049471	.	C	CCA	2460	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=6;HapScore=1;MGOF=8;MMLQ=28;MQ=58.27;NF=0;NR=51;PP=2460;QD=48.6470588235;SC=CGTGAGCCCCCCCACTCCCAC;SbPval=1.0;Source=Platypus;TC=63;TCF=1;TCR=62;TR=51;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/1:12,51:0.81:63
chr19	1049480	.	A	T	1377	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=7;HapScore=1;MGOF=8;MMLQ=28;MQ=57.18;NF=0;NR=47;PP=1377;QD=30.0376853733;SC=CCCCACTCCCACCCCGTGAGC;SbPval=1.0;Source=Platypus;TC=48;TCF=0;TCR=48;TR=47;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/1:1,47:0.98:48
chr19	1049489	.	GC	G	1844	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=7;HapScore=1;MGOF=8;MMLQ=23;MQ=56.03;NF=0;NR=43;PP=1844;QD=43.3720930233;SC=CACCCCGTGAGCCCCCCCACC;SbPval=1.0;Source=Platypus;TC=43;TCF=0;TCR=43;TR=43;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	1049491	.	C	G	1043	.	AC=2;AF=1.00;AN=2;BRF=0.32;FR=1.0000;HP=6;HapScore=1;MGOF=8;MMLQ=23;MQ=56.8;NF=0;NR=37;PP=1043;QD=29.1289516905;SC=CCCCGTGAGCCCCCCCACCAC;SbPval=1.0;Source=Platypus;TC=42;TCF=0;TCR=42;TR=37;WE=1049499;WS=1049461;set=Platypus	GT:AD:AF:DP	1/1:5,37:0.88:42
chr19	1050781	.	A	AAATAATAAT	709.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	1050874	rs12151021	A	G	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	1051751	rs3764651	A	G	258.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1052005	rs3764652	C	T	4927.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:2,182:0.99:184
chr19	1053299	rs3829687	C	T	325.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	1053677	rs3752242	G	A	3520.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	1054060	rs3752243	A	G	15573.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr19	1055191	rs3745842	G	A	6889.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	1056018	rs3833881	GC	G	6412.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	1056065	rs881768	A	G	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	1056492	rs3752246	G	C	16397.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr19	1057776	rs113768208	G	GA	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.595;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.652;QD=1.09;ReadPosRankSum=2.456;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr19	1059004	rs2279796	A	G	3550.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	1061698	rs11420923	C	CA	320.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=0.763;QD=8.44;ReadPosRankSum=-1.213;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chr19	1064193	rs4147930	G	A	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.801;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	1065018	rs4147934	G	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	1065197	rs4147936	G	C	5698.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	1065945	rs2242436	C	T	514.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	1066256	rs4147938	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	1068734	rs3764653	T	C	10623.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.27;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	1068738	rs1801284	G	A	10475.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	1071312	rs4807506	C	T	1667.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	1073409	rs2074441	C	G	3540.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	1074000	rs2074442	A	T	3124.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.868;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	1074064	rs12610818	C	G	3300.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	1074252	rs11084881	T	G	6360.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	1077985	rs7251797	A	G	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	1080189	rs2074453	G	C	18808.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:1,723:1.00:724
chr19	1080311	rs2074454	G	C	14353.77	.	AC=2;AF=1.00;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr19	1081120	rs8113708	A	G	2319.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	1081617	rs10404947	A	G	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	1090020	rs61585798	TG	T	934.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=28.33;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1090803	rs3787016	A	G	6915.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	1094004	rs12459404	G	A	7123.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	1095061	rs2074445	C	T	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	1095122	rs2074446	C	G	2370.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	1095151	rs10416031	A	G	2960.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	1095352	rs17554924	C	G	9272.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.37;SOR=1.032;set=HC	GT:AD:AF:DP	1/1:0,209:1.00:209
chr19	1095355	rs17554917	C	T	9223.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	1095430	rs17554909	T	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	1108765	rs147525230	G	A	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	1147431	rs56808651	T	C	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.89;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	1222034	.	G	A	5108.77	.	AC=2;AF=1.00;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	1244200	rs76660329	G	C	7377.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	1268178	rs12975875	G	A	167.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	1270231	rs56378951	GC	G	2359.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:4,91:0.96:95
chr19	1271274	rs12609287	C	T	9798.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:1,372:1.00:373
chr19	1271529	rs4807050	C	T	1961.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	1272040	rs12488	T	C	5563.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	1274539	rs8108009	T	C	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1277070	rs72979542	G	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr19	1277275	rs757292	G	C	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	1354983	rs10555657	AGCG	A	1176.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	1357082	rs713042	T	C	3211.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	1358726	rs2285972	C	T	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	1360082	rs8109377	G	A	4195.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	1360575	rs3826942	G	A	6490.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	1364139	rs10570720	ACACT	A	14389.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	1366422	rs2668418	C	G	2587.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	1367226	rs11668809	G	A	4880.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.915;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	1371354	rs2668424	T	C	8282.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	1388538	rs1142530	C	T	2177.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	1389064	rs7258846	G	T	16558.77	.	AC=2;AF=1.00;AN=2;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.75;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,619:1.00:619
chr19	1389324	rs66919466	ACT	A	9976.73	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	1389517	rs11666067	C	A	10008.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr19	1397443	rs17851582	G	A	5007.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	1399056	rs55776826	C	T	10840.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	1407618	.	A	AGCC	480.73	.	AC=1;AF=0.500;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	1454985	rs35774440	AC	A	140.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	1483945	.	G	GGGGGGC	1578.73	.	AC=2;AF=1.00;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1488147	rs4807120	C	T	8184.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr19	1508738	rs265296	G	A	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	1510661	rs265291	A	G	1754.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	1526931	rs2656858	A	C	9039.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.03;QD=26.59;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,340:1.00:340
chr19	1527051	rs11288093	CG	C	1137.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;QD=29.17;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	1527806	rs7254791	G	A	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	1528149	rs139924905	C	CGGCGTGGGGTCCCT	4724.73	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	1528231	rs2668408	T	C	6715.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	1528780	rs2656861	A	C	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	1529527	rs2668409	G	C	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	1529550	rs2656863	A	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	1530015	rs2668410	C	G	324.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	1533868	.	TGTGGGGGCGAGGG	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=4;HapScore=1;MGOF=11;MMLQ=23;MQ=60.0;NF=10;NR=11;PP=2965;QD=20;SC=GGGTGCTGGGTGTGGGGGCGA;SbPval=0.6;Source=Platypus;TC=23;TCF=11;TCR=12;TR=21;WE=1533891;WS=1533858;set=Platypus	GT:AD:AF:DP	1/1:2,21:0.91:23
chr19	1533869	rs61257352	GT	G	2028.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.27;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	1533871	rs201797915	GGGGGCGAGGGGT	G	2029.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.29;SOR=1.562;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	1533883	.	T	G	650	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=8;HapScore=1;MGOF=11;MMLQ=23;MQ=60.0;NF=28;NR=11;PP=650;QD=17.5582362192;SC=GGGCGAGGGGTGGGGACGCCC;SbPval=0.65;Source=Platypus;TC=46;TCF=32;TCR=14;TR=39;WE=1533891;WS=1533858;set=Platypus	GT:AD:AF:DP	1/1:7,39:0.85:46
chr19	1533972	rs11084897	C	G	2624.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	1534042	rs10853954	T	C	2169.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	1534154	.	GA	G	213.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.729;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.824;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.68;ReadPosRankSum=-0.063;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	1534156	.	A	G	130.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.021;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.399;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:18,14:0.44:32
chr19	1534191	rs10775585	C	T	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.99;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	1534198	rs12608783	A	G	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=2.030;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	1534215	rs11084899	T	C	1120.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	1535084	rs12984316	G	A	4112.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	1535193	rs58035688	GCCC	G	17056.73	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	1535205	rs265282	G	C	17401.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	1535291	rs12462146	G	A	6121.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	1535349	rs265281	G	A	2790.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	1555434	rs200001023	A	AC	1771.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:4,63:0.94:67
chr19	1575410	.	T	TA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.761;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.642;QD=1.67;ReadPosRankSum=1.002;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:46,18:0.28:64
chr19	1578371	rs371220154	GCTC	G	284.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=4.591;QD=2.01;ReadPosRankSum=-0.692;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:124,18:0.13:142
chr19	1605501	rs58213078	CG	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.22;ReadPosRankSum=-0.414;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr19	1619339	rs8140	T	C	1391.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.85;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	1783261	rs2385387	C	T	2878.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	1784890	rs3764605	A	G	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	1784944	rs3764606	A	G	1761.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.53;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	1785772	rs8110462	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	1790737	rs199632977	C	T	9077.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr19	1795783	.	T	TAC	508.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.327;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=0.696;QD=8.21;ReadPosRankSum=0.214;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:29,33:0.53:62
chr19	1802129	rs79891569	C	T	350.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	1806210	rs7252063	A	C	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	1809836	rs8107742	T	C	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	1810605	rs716993	T	C	5882.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	1811547	rs12609187	A	G	9145.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr19	1817134	.	C	CCCAGATGGGG	2170.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	1818459	rs1610106	A	G	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	1818952	rs893538	C	G	1864.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	1819234	rs113598561	ACT	A	1493.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	1821637	rs4807145	A	G	3452.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	1825786	rs59277540	T	TA	276.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.75;ReadPosRankSum=1.065;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:16,25:0.61:41
chr19	1848243	rs12984809	A	G	336.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.05;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	1863587	.	CGGAGGA	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.41;ReadPosRankSum=1.068;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	1863628	rs112570276	A	C	224.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	1880950	rs4807160	T	C	3513.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	1880972	.	C	T	3189.77	.	AC=2;AF=1.00;AN=2;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	1908694	rs4806818	C	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	1914795	rs11666645	C	T	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	1914940	rs11084918	A	G	2601.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	1915118	rs10853957	A	C	672.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	1918023	rs10415845	T	C	1334.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	1918760	rs376128461	CA	C	200.76	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.98;MQRankSum=0.612;QD=11.15;ReadPosRankSum=-0.093;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr19	1923280	.	G	C	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=2.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=-1.359;SOR=1.001;set=HC	GT:AD:AF:DP	0/1:109,37:0.25:146
chr19	1924050	rs4807170	T	C	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	1924076	rs7255232	TC	CT	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	1952841	rs2396366	T	C	5610.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	1953637	rs35628322	C	T	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	1954126	rs34622118	C	CA	6948.73	.	AC=2;AF=1.00;AN=2;DB;DP=163;MQ=60.07;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	1954128	rs34797288	T	C	6957.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	2015540	.	GGGCGGCGGCGGC	G	284.74	.	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.64;QD=35.59;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	2037846	rs1064543	A	C	296.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	2040231	rs377048089	C	T	1482.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	2042746	rs75160224	G	A	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	2098651	rs118089752	G	A	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	2099362	rs1051767	C	T	5647.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	2113467	rs146083008	G	A	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	2128986	.	CG	AG	955	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=15;MMLQ=23;MQ=59.37;NF=17,17;NR=5,5;PP=613,955;QD=29.4441460249;SC=GGCCCGCCCCCGCCGCTCCGA;SbPval=0.83;Source=Platypus;TC=29;TCF=20;TCR=9;TR=22,22;WE=2128997;WS=2128976;set=Platypus	GT:AD:AF:DP	0/1:7,22:0.76:29
chr19	2128986	.	CG	C	955	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=1.0000,1.0000;HP=4;HapScore=1;MGOF=15;MMLQ=23;MQ=59.37;NF=17,17;NR=5,5;PP=613,955;QD=29.4441460249;SC=GGCCCGCCCCCGCCGCTCCGA;SbPval=0.83;Source=Platypus;TC=29;TCF=20;TCR=9;TR=22,22;WE=2128997;WS=2128976;set=Platypus	GT:AD:AF:DP	0/1:1,22:0.96:23
chr19	2128989	.	C	A	651	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=1;MGOF=15;MMLQ=28;MQ=59.37;NF=18;NR=5;PP=651;QD=29.816139676;SC=CCGCCCCCGCCGCTCCGACAC;SbPval=0.85;Source=Platypus;TC=29;TCF=20;TCR=9;TR=23;WE=2128997;WS=2128976;set=Platypus	GT:AD:AF:DP	1/1:6,23:0.79:29
chr19	2129473	rs758287	TC	CG	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	2137870	rs2240658	C	T	2481.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	2138654	rs25672	T	G	4997.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	2138848	rs12980238	C	T	1260.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	2226772	rs2302061	G	C	13497.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr19	2244903	rs6510652	T	G	1510.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	2246652	rs2074861	G	A	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	2249477	rs10407022	G	T	5009.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	2250528	rs8112524	G	A	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	2251512	rs7252789	T	A	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	2251817	rs10417628	T	C	11577.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr19	2253590	rs3746158	C	T	5837.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	2255336	rs886363	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	2271282	rs2074457	T	C	1252.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	2271323	rs2523175	A	G	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:1,97:0.99:98
chr19	2271577	rs28384674	CT	C	3241.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	2271741	rs2074458	G	A	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	2321854	rs886881	C	G	5893.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	2337377	rs3752204	C	G	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	2339958	rs1609752	T	C	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr19	2340050	rs1609753	C	T	6037.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	2340154	rs5826760	G	GC	5564.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	2341059	rs11880345	GT	AC	8520.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	2343142	rs3746289	G	A	1367.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	2353150	rs1128402	C	A	5758.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	2363776	.	C	CTGTG	232.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	2363778	rs7255676	C	G	241.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	2363787	rs7256144	A	T	275.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.40;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	2363805	rs4807241	T	C	185.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	2398849	rs10407225	A	G	4708.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	2405304	rs78369878	A	T	1297.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	2405559	rs7254110	A	G	13343.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,508:1.00:508
chr19	2405641	rs4807260	C	T	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	2410332	rs3848635	T	C	8029.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	2410442	rs76437746	G	A	8401.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr19	2413775	rs10153477	C	T	6224.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.42;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	2413911	rs10153474	G	A	11568.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr19	2413961	rs10153475	G	C	11839.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.283;ClippingRankSum=0.000;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.67;ReadPosRankSum=-0.610;SOR=0.260;set=HC	GT:AD:AF:DP	1/1:1,443:1.00:444
chr19	2416796	rs45546534	A	G	4813.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	2417991	rs78031006	C	T	4246.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	2424334	rs74381138	C	G	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	2424938	rs7343178	A	G	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	2426198	.	G	GGGTCATGGGGATGCATTTTGGTACCACCCTTTGTTCCAA	804.73	.	AC=2;AF=1.00;AN=2;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	2426828	rs6945	G	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	2427152	rs12609742	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	2427204	rs113881095	CT	C	4116.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	2432555	rs736705	A	G	14742.77	.	AC=2;AF=1.00;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	1/1:0,570:1.00:570
chr19	2433770	.	AC	A	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=424;ExcessHet=3.0103;FS=6.451;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-10.888;QD=0.21;ReadPosRankSum=-0.391;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:374,42:0.10:416
chr19	2433890	rs11084940	A	G	19449.77	.	AC=2;AF=1.00;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr19	2434551	rs2304241	A	G	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	2438119	rs1865111	C	T	3708.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	2444363	rs11668494	A	G	10503.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr19	2514966	rs67860726	CAG	C	1029.73	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr19	2520716	rs1133692	T	C	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.33;SOR=0.833;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	2520791	rs3764585	C	A	1382.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	2538074	rs71337145	C	CAAACA	1536.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.20;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	2575984	.	C	CAG	2976	.	AC=2;AF=1.00;AN=2;BRF=0.5;FR=1.0000;HP=2;HapScore=1;MGOF=57;MMLQ=28;MQ=56.38;NF=103;NR=42;PP=2976;QD=20;SC=CAGGCAGACACACACATGCTC;SbPval=0.51;Source=Platypus;TC=145;TCF=103;TCR=42;TR=145;WE=2575992;WS=2575983;set=Platypus	GT:AD:AF:DP	1/1:0,145:1.00:145
chr19	2576075	.	GCAGACACACACA	G	2976	.	AC=2;AF=1.00;AN=2;BRF=0.43;FR=1.0000;HP=1;HapScore=1;MGOF=8;MMLQ=25;MQ=58.38;NF=58;NR=227;PP=2976;QD=20;SC=ACGCAGACATGCAGACACACA;SbPval=0.66;Source=Platypus;TC=323;TCF=72;TCR=251;TR=285;WE=2576094;WS=2576065;set=Platypus	GT:AD:AF:DP	1/1:38,285:0.88:323
chr19	2576272	rs1029753	T	C	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	2643563	rs8101531	C	T	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.153;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=17.995;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=-6.831;QD=1.32;ReadPosRankSum=-5.315;SOR=2.118;set=HC	GT:AD:AF:DP	0/1:161,29:0.15:190
chr19	2717880	rs7343093	A	G	3243.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	2732986	rs759073	T	C	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	2790394	rs1736176	G	A	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	2796021	rs1736180	G	A	5445.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	2807375	rs1640274	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	2810248	rs1736184	G	A	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	2811788	.	T	C	911	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=4;HapScore=1;MGOF=12;MMLQ=23;MQ=57.82;NF=16;NR=42;PP=911;QD=16.3064002163;SC=ACGCGGGGACTGGGGACAGGG;SbPval=0.64;Source=Platypus;TC=61;TCF=18;TCR=43;TR=58;WE=2811796;WS=2811778;set=Platypus	GT:AD:AF:DP	1/1:3,58:0.95:61
chr19	2812153	rs941407	A	G	7951.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	2813000	rs1736185	A	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	2819965	rs2741993	A	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	2820105	rs2537856	G	A	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	2823257	rs6510702	CT	AC	1318.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	2823269	rs6510704	G	A	637.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	2833576	rs8107668	G	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	2833617	rs8107771	G	A	1805.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	2834808	rs8102063	T	C	9256.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	2841360	rs1006717	G	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	2841695	rs10412693	G	T	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	2841718	rs11667713	C	T	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.42;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	2851678	rs11880407	A	T	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	2853566	rs10412087	A	G	9904.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	2867583	rs8104536	C	A	307.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	2873439	rs9304900	C	T	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	2878397	rs11084965	A	G	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	2896818	rs8100809	C	T	6311.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	2896948	rs8104326	T	C	6752.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.57;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	2896953	rs8101379	A	G	6641.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	2897133	rs8103080	G	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	2900865	rs10420989	G	A	387.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	2900930	rs12981209	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	2901114	rs11279103	CGCCGAAGTCT	C	2779.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	2915738	rs2043336	T	A	5378.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	2916048	rs2043335	T	A	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	2917186	rs2288959	T	C	4413.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	2917612	rs10410539	T	C	6694.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	2933480	rs3786948	C	T	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	2934282	rs3746073	T	C	4793.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	2936443	rs7251272	A	G	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	2936623	rs4807371	C	T	2362.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	2978135	rs445657	G	C	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,114:0.99:115
chr19	2989810	rs504199	G	T	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	2991814	rs428113	T	C	5486.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	2993427	rs435806	T	C	5049.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	2993946	rs35271493	G	A	1027.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.34;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	2994107	rs34438430	C	CT	976.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	2994814	rs439808	T	C	3267.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	2994837	rs401886	A	G	3370.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	2994885	rs11084986	G	T	2209.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	3000822	rs35046512	C	CT	315.37	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.000;QD=9.56;ReadPosRankSum=1.133;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr19	3006236	rs3050847	A	AAT	4132.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	3009788	rs216284	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	3014647	rs1844880	C	A	4891.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	3045627	rs112501424	C	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	3053802	rs425485	T	C	3377.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.966;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	3054089	rs2302301	C	T	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	3056285	rs58280427	G	C	913.78	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.43;ReadPosRankSum=0.669;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:2,37:0.95:39
chr19	3061344	rs62125457	G	A	449.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	3113305	rs1682811	G	C	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	3115124	rs10407783	C	T	5777.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	3119184	rs308046	T	G	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	3119405	rs370286	T	G	5814.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.934;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.55;ReadPosRankSum=-0.705;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:2,217:0.99:219
chr19	3136692	rs411210	T	C	1005.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	3148819	rs8113569	G	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	3149990	rs170159	G	C	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	3150238	rs310680	A	G	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	3155736	rs2074864	T	C	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	3186085	rs11551095	G	T	3773.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	3207348	rs312069	G	C	7213.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	3224896	rs17852497	G	C	8804.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	3273818	rs312928	T	C	3613.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	3278206	rs11879556	G	A	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	3366532	.	CG	C	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=0.000;QD=1.62;ReadPosRankSum=-0.748;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr19	3381645	rs67426967	GC	G	14089.73	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr19	3382274	rs2074944	C	T	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	3448869	rs4807473	A	G	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	3452683	rs8105687	A	G	10689.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	3539444	rs7258234	T	G	1577.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	3543478	.	GC	G	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.84;ReadPosRankSum=0.741;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	3544609	rs143698298	GAA	G	1341.73	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	3544628	rs72976620	G	A	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	3557005	rs1715092	A	G	459.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	3595794	rs4523	A	G	5720.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	3610502	rs740349	G	A	546.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	3611146	rs2074786	A	G	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	3611186	rs758016	C	T	7003.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=0.000;QD=43.23;ReadPosRankSum=0.686;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:2,160:0.99:162
chr19	3611190	rs758017	C	A	7059.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.893;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.91;MQRankSum=0.000;QD=42.79;ReadPosRankSum=0.899;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:2,163:0.99:165
chr19	3611765	rs2369188	A	G	6499.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	3611972	rs2158935	G	A	13181.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr19	3612914	rs6510763	T	C	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	3613346	rs2074789	G	A	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	3613400	rs2240504	C	G	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	3613422	rs2074790	G	A	5681.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	3613596	rs57918402	A	G	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	3614403	rs7255692	T	C	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	3623229	rs7252821	A	T	692.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	3623505	rs7252742	C	T	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	3623534	rs7253265	A	G	2825.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	3626476	rs4806945	T	C	1791.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	3633273	rs542690	G	C	2539.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	3637395	rs10408855	T	C	14631.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr19	3638041	rs1879038	G	C	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	3641672	rs3815338	C	T	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	3645947	rs12460780	G	A	9656.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.860;set=HC	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	3647440	rs4806948	A	G	3551.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	3653525	rs2074957	C	T	6200.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	3656582	rs149695438	G	A	3049.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	3656652	rs10432303	G	A	1095.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	3660944	rs3826944	G	A	14084.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr19	3667461	rs7257360	T	C	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	3722079	rs113181248	TGCGTCCGC	T	1654.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	3728275	rs1985864	C	G	2909.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	3728609	rs2067019	G	A	11260.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	3730041	rs7258176	C	T	10442.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.897;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	3738649	rs599587	A	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	3738971	rs600986	A	G	5176.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	3740658	rs10416362	T	G	2299.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	3751403	.	C	G	1187.77	.	AC=2;AF=1.00;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	3779934	rs12610723	A	C	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	3784757	rs2074976	T	G	4799.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	3785223	rs4807509	T	G	2122.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	3789138	rs74479793	C	T	526.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	3811457	rs10413220	G	C	976.94	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:9,50:0.85:59
chr19	3819275	rs2301840	A	T	1803.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	3820191	rs2301843	C	T	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	3820293	rs2301844	A	G	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	3820305	rs2301845	T	G	2951.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	3820389	rs2301846	A	C	1559.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	3820441	rs2301847	A	G	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	3822008	rs28510805	C	G	1827.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	3823237	rs2240231	G	A	8242.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	3831198	rs12461577	A	G	1435.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	3831449	rs2240232	G	A	2646.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	3831525	rs2240233	C	A	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:1,158:0.99:159
chr19	3831765	rs2240235	G	A	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	3833572	rs56713158	TA	T	1441.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=1.098;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.443;QD=12.12;ReadPosRankSum=0.654;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:20,99:0.83:119
chr19	3869128	rs35860262	C	T	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	3908201	rs3810373	T	C	3194.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	3910894	rs140799527	C	T	10986.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr19	3910933	rs4807527	G	A	8707.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	3911012	rs4807528	T	A	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	3918721	rs11667520	A	G	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	3920616	rs8108660	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.72;QD=25.69;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	3938647	rs144105210	C	T	5659.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	3938782	rs12459191	C	T	4539.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	3938841	rs372800507	TG	T	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=-0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=2.423;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	3958324	rs3745980	C	G	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	3958397	rs7255123	A	G	4255.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	3963724	rs2278437	G	A	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	3969505	rs2304194	G	A	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	3977486	rs36527	A	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	3979408	rs36526	A	G	7085.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	3980824	rs36525	A	G	4534.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	4024020	rs2028827	G	A	10403.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.782;set=HC	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	4028067	rs4520954	C	T	8601.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.31;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	4028783	rs2289863	C	T	12545.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	4032949	rs895333	A	G	3920.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	4033244	rs749449	G	C	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	4033462	rs7255988	T	C	11594.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr19	4033614	rs12460140	G	A	7507.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr19	4037525	rs2305106	C	T	10217.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	4042077	rs4410205	C	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	4097203	rs10681431	T	TA	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=0.000;QD=3.06;ReadPosRankSum=0.789;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:17,13:0.43:30
chr19	4101062	rs10250	G	T	2331.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	4117705	rs350890	T	C	2576.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	4123566	.	TCCC	T	2742	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=7;HapScore=3;MGOF=28;MMLQ=23;MQ=58.35;NF=0;NR=34;PP=2742;QD=20;SC=TGCCCCGTCCTCCCCCGAGGG;SbPval=1.0;Source=Platypus;TC=91;TCF=13;TCR=78;TR=34;WE=4123595;WS=4123559;set=Platypus	GT:AD:AF:DP	0/1:57,34:0.37:91
chr19	4169998	rs350852	G	A	631.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	4170378	rs350851	G	A	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	4174950	rs350845	A	G	4163.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:2,164:0.99:166
chr19	4177051	rs350844	A	G	2348.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	4177331	rs350843	A	C	895.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	4180690	rs7260071	T	G	3866.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	4180836	rs352493	C	T	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr19	4198169	rs28615978	C	T	1776.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	4199839	rs6510793	A	C	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	4202683	rs352513	T	C	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	4207161	rs34976536	A	T	669.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4208082	rs2240670	T	C	5400.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	4210035	rs75403641	T	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.791;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	4210401	rs60239405	C	CA	3887.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	4210465	rs12710072	A	G	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.03;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	4212808	rs58559746	C	A	1111.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	4216318	rs45510899	G	T	5568.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	4216910	rs10413818	G	A	2862.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	4217207	rs353693	T	G	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	4219541	rs79297355	A	T	6554.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	4280207	rs56261530	G	C	9320.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr19	4292480	rs57181230	C	T	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4292597	rs888932	C	T	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	4292961	rs11287595	CT	C	1864.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.899;QD=11.95;ReadPosRankSum=-0.215;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:28,128:0.82:156
chr19	4294623	rs58237134	C	A	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	4294807	rs78320454	G	A	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:1,149:0.99:150
chr19	4297833	rs112566570	G	A	963.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	4297855	rs112590213	TA	T	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=1.190;QD=9.62;ReadPosRankSum=-0.963;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:10,41:0.80:51
chr19	4302504	rs888933	C	G	4740.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	4304774	rs17523436	G	A	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.99;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4304855	rs62129299	A	G	31.29	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	4306311	rs4807578	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	4308098	rs11669091	T	C	1809.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	4308128	rs73919830	C	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	4310327	rs11879976	C	T	3061.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	4325115	rs2002349	G	A	944.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.55;QD=25.53;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	4325133	rs5826839	CA	C	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.02;ReadPosRankSum=1.969;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr19	4325327	rs10411394	G	A	7131.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	4325433	rs1138253	G	A	6886.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	4328860	rs11882358	T	C	7984.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	4333711	rs7247504	C	T	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	4352763	rs11668153	C	T	744.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	4352838	rs11668187	C	G	1963.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.080;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.54;ReadPosRankSum=1.640;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:1,73:0.99:74
chr19	4352959	rs11882587	A	G	4122.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	4353841	rs7246177	T	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	4355035	rs2041772	A	G	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.64;SOR=3.690;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	4355054	rs2041773	A	G	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.84;SOR=4.528;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	4355203	rs2041774	G	A	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	4357555	rs4807583	A	G	7912.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	4363289	rs62129346	C	T	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	4400314	rs62129356	C	T	6019.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	4402659	rs200677191	G	GGCGGCAGCA	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=62.62;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	4406160	rs243342	G	A	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	4408751	rs243347	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	4409756	rs2230636	A	G	7102.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	4417845	rs34080966	T	C	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	4423419	rs11668886	C	T	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.60;SOR=1.234;set=HC	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	4429007	rs62130978	C	T	1683.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	4442336	rs9352	C	T	3475.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	4442529	rs243382	T	C	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	4442999	rs243383	T	G	5028.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	4446995	rs243389	C	T	3543.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	4453324	rs376965	TG	CC	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	4454083	rs1127888	C	T	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.971;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	4457496	rs10425328	CG	GC	3025.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	4457518	rs56153949	C	G	4006.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	4457791	rs149835255	TTA	T	2908.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.78;SOR=3.716;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	4457798	rs56254866	A	T	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.896;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.26;ReadPosRankSum=-0.596;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr19	4472322	rs61606737	C	T	5549.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	4472460	rs182316418	G	T,GT	291.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.193;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=19.45;ReadPosRankSum=1.043;SOR=1.739;set=HC	GT:AD:AF:DP	1/2:1,9,5:0.60,0.33:15
chr19	4472484	.	G	GAGGC	322.75	.	AC=2;AF=1.00;AN=2;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	4472503	rs189053880	C	A	254.80	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	4475362	rs2288932	T	G	6264.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr19	4488632	rs10422594	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	4488926	rs10421685	G	A	5444.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=26.69;SOR=1.004;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	4489013	.	T	C	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-4.237;QD=0.79;ReadPosRankSum=0.366;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:36,4:0.10:40
chr19	4489014	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-4.237;QD=0.79;ReadPosRankSum=0.390;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:36,4:0.10:40
chr19	4489021	.	A	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-4.117;QD=0.84;ReadPosRankSum=0.369;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:34,4:0.11:38
chr19	4491476	rs11878416	G	C	1134.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	4493708	rs892161	A	G	5026.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	4496198	rs2288930	A	G	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	4498212	rs2288927	A	C	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	4498245	rs2288926	A	G	1292.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	4498700	rs10406139	A	T	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	4499632	rs72100503	AAGCTGGCCGGGGAGG	A	3823.73	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	4502287	rs7254167	G	T	582.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	4508945	rs8105775	A	G	7703.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	4509059	rs4991027	C	T	1777.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	4510377	.	C	CAA	719	.	AC=2;AF=1.00;AN=2;BRF=0.18;FR=1.0000;HP=11;HapScore=4;MGOF=7;MMLQ=25;MQ=58.99;NF=19;NR=6;PP=719;QD=29.12;SC=GACTCTGTCTCAAAAAAAAAA;SbPval=0.96;Source=Platypus;TC=87;TCF=50;TCR=37;TR=25;WE=4510397;WS=4510367;set=Platypus	GT:AD:AF:DP	1/1:62,25:0.29:87
chr19	4510387	.	AAC	A	233	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=10;HapScore=4;MGOF=7;MMLQ=24;MQ=59.78;NF=18;NR=6;PP=233;QD=10.0833333333;SC=CAAAAAAAAAAACAAAACAGT;SbPval=0.96;Source=Platypus;TC=90;TCF=50;TCR=40;TR=24;WE=4510397;WS=4510367;set=Platypus	GT:AD:AF:DP	0/1:66,24:0.27:90
chr19	4510389	rs8105610	C	A	1549.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.20;MQRankSum=0.524;QD=18.67;ReadPosRankSum=-0.410;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:9,74:0.89:83
chr19	4510723	rs78776990	G	A	10413.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr19	4511140	rs7255715	C	G	15713.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr19	4511341	rs74202324	T	C	3195.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.610;ClippingRankSum=0.000;DB;DP=860;ExcessHet=3.0103;FS=7.501;MLEAC=1;MLEAF=0.500;MQ=56.92;MQRankSum=-6.241;QD=3.73;ReadPosRankSum=-7.589;SOR=1.024;set=HC	GT:AD:AF:DP	0/1:656,200:0.23:856
chr19	4511350	rs7259721	T	A	26198.77	.	AC=2;AF=1.00;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	1/1:0,854:1.00:854
chr19	4511453	rs7255187	G	A	24177.77	.	AC=2;AF=1.00;AN=2;DB;DP=890;set=Intersection	GT:AD:AF:DP	1/1:0,886:1.00:886
chr19	4511525	rs7256712	A	G	27064.77	.	AC=2;AF=1.00;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	1/1:0,1023:1.00:1023
chr19	4511647	rs7256387	C	G	8858.77	.	AC=1;AF=0.500;AN=2;DB;DP=1117;set=Intersection	GT:AD:AF:DP	0/1:684,432:0.39:1116
chr19	4511725	rs73920825	T	C	14441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.327;ClippingRankSum=0.000;DB;DP=1079;ExcessHet=3.0103;FS=2.550;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-10.297;QD=13.38;ReadPosRankSum=0.889;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:684,395:0.37:1079
chr19	4511725	.	TTGGATGGCCCCT	CTGGACGGCCCCC,CTGGACGGCCCCT	2934	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=5;HapScore=1;MGOF=25;MMLQ=27;MQ=54.53;NF=209,226;NR=120,197;PP=2934,511;QD=20;SC=CCAGGCCCCCTTGGATGGCCC;SbPval=0.94;Source=Platypus;TC=518;TCF=269;TCR=249;TR=329,423;WE=4511745;WS=4511715;set=Platypus	GT:AF:DP	0/1:0.64:518
chr19	4511730	rs62115190	T	C	14248.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947;ClippingRankSum=0.000;DB;DP=1067;ExcessHet=3.0103;FS=3.372;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-10.591;QD=13.35;ReadPosRankSum=5.342;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:684,383:0.36:1067
chr19	4511737	rs57610751	T	C	10101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715;ClippingRankSum=0.000;DB;DP=1046;ExcessHet=3.0103;FS=2.780;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=2.841;QD=9.66;ReadPosRankSum=15.294;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:754,292:0.28:1046
chr19	4511860	.	G	A	2962	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=1;HapScore=1;MMLQ=21;MQ=58.44;NF=151;NR=239;PP=2962;QD=20;SC=CTGCCCCCATGAGCCCAGTAG;SbPval=0.87;Source=Platypus;TC=1015;TCF=479;TCR=536;TR=390;WE=4511868;WS=4511842;set=Platypus	GT:AD:AF:DP	1/0:625,390:0.38:1015
chr19	4512514	rs7259625	G	C	17992.77	.	AC=2;AF=1.00;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	1/1:3,680:1.00:683
chr19	4512748	rs112063407	T	C	19741.77	.	AC=2;AF=1.00;AN=2;DB;DP=745;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,743:1.00:743
chr19	4513143	rs4807595	CA	TG	11665.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	4513559	rs4807597	A	G	9334.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr19	4525046	rs1610090	A	G	5834.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	4525149	rs142219459	G	A	2948.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.838;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	4529622	.	T	TACACAC,TAC	491.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=13;set=Intersection	GT:AF:DP	1/1:0.91:11
chr19	4550698	rs2043328	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	4556816	rs62115778	C	A	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	4557056	rs10422881	A	C	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	4557299	rs17434453	C	T	5699.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	4557437	rs11673058	C	T	1167.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	4665115	rs11880911	G	C	860.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	4670236	rs10401515	C	G	11444.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr19	4670313	rs2270090	C	G	4488.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	4720031	rs3833278	C	CCCT	2548.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	4720042	rs11672100	G	T	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	4720052	rs3833277	G	GC	2243.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	4772202	rs3760955	A	C	7455.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	4772343	rs3760954	T	C	8405.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr19	4839679	rs72121413	C	CT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.888;ClippingRankSum=-0.000;DB;DP=30;ExcessHet=3.0103;FS=2.187;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.58;ReadPosRankSum=-0.114;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	4844665	rs36066928	TC	T	1539.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	4847713	rs9973235	A	G	1606.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	4847874	rs9304915	A	G	4467.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.740;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	4852106	rs2271058	A	G	22224.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:4,835:1.00:839
chr19	4852137	rs1055919	C	T	21426.77	.	AC=2;AF=1.00;AN=2;DB;DP=807;set=Intersection	GT:AD:AF:DP	1/1:0,802:1.00:802
chr19	4859937	rs8289	T	C	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.97;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	4890914	rs2656938	A	G	135.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	4896948	rs35308440	C	CT	1028.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.331;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=-1.265;SOR=1.414;set=HC	GT:AD:AF:DP	1/1:9,61:0.87:70
chr19	4902754	rs2779168	G	A	5651.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	4909629	rs8103849	C	G	3077.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	4910889	rs2261988	G	T	6570.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	4910924	rs2261986	C	T	7030.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	4945974	rs2250978	T	C	426.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.40;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	4950831	.	T	A	4148.77	.	AC=2;AF=1.00;AN=2;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr19	4954644	rs2307207	C	T	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	4954679	rs55946225	G	GC	3002.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	4960583	rs66972926	CTG	C	6307.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	5041049	rs11878982	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	5041178	rs2240678	T	C	6832.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	5047691	rs2620818	G	A	4408.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	5082574	rs10469326	C	T	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	5111994	rs2613736	A	G	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	5132051	rs2620839	G	A	1862.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	5135392	rs2620836	A	G	8865.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	5137122	rs12972454	C	T	1360.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	5137941	rs74172690	C	T	7835.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	5214697	rs4807697	A	G	10386.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr19	5239175	.	GGA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=4.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.95;ReadPosRankSum=0.661;SOR=1.927;set=HC	GT:AD:AF:DP	0/1:23,5:0.18:28
chr19	5600370	rs2285969	A	G	5798.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	5661896	.	AT	A	219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.632;QD=2.47;ReadPosRankSum=-1.267;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr19	5667204	rs148831822	AC	A	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.742;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.95;ReadPosRankSum=-1.023;SOR=0.503;set=HC	GT:AD:AF:DP	0/1:139,24:0.15:163
chr19	5684775	rs35832694	G	A	1410.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	5691987	rs3835296	T	TCAGTTCTGGCCCAGACAGGGCCTGACATC	2700.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	5696245	rs4073993	A	G	5303.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	5707204	rs945828	T	C	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	5727414	rs5826899	C	CT	2140.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	5753572	.	C	CA	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.019;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.03;ReadPosRankSum=-0.862;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	5787214	.	TG	CA	2157	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=2;HapScore=1;MGOF=38;MMLQ=28;MQ=50.48;NF=13;NR=3;PP=2157;QD=138.154242179;SC=TGGTGGGAGATGGTGGGAGGT;SbPval=0.98;Source=Platypus;TC=58;TCF=33;TCR=25;TR=16;WE=5787263;WS=5787204;set=Platypus	GT:AD:AF:DP	1/0:42,16:0.28:58
chr19	5787245	.	G	C	787	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=1;MGOF=38;MMLQ=22;MQ=50.44;NF=6;NR=9;PP=787;QD=54.7847475031;SC=GGTGGGAGGTGGTGGGAGACA;SbPval=0.08;Source=Platypus;TC=55;TCF=35;TCR=20;TR=15;WE=5787263;WS=5787204;set=Platypus	GT:AD:AF:DP	0/1:40,15:0.27:55
chr19	5831724	rs112313064	T	C	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.64;QD=29.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	5832209	rs778805	G	A	9086.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	5866585	rs778982	C	T	3481.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	5866654	rs778983	A	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr19	5866736	rs57100281	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.61;QD=25.67;SOR=3.014;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	5866816	rs28541500	G	A	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.42;QD=30.16;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	5867191	rs10412834	G	A	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	5867748	rs778971	G	T	7866.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr19	5892317	rs1626918	C	T	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	5892382	rs1678867	C	T	1184.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	5892486	rs1628564	C	T	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	5892568	rs1629368	G	T	4024.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	5892585	rs60236148	G	A	4060.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	5892770	rs1631032	C	T	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	5903807	rs8108064	G	T	5357.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	5905141	rs10406399	G	A	368.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	5908969	rs10404195	G	A	7387.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr19	5928185	rs274793	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	6026288	rs34910462	GA	G	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.33;ReadPosRankSum=1.032;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:86,21:0.20:107
chr19	6141471	rs10853992	C	A	1657.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	6141758	rs9304926	G	T	1016.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	6141809	rs9304927	G	A	563.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	6147743	rs9304929	G	C	2203.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	6151549	rs10422296	T	C	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	6151703	rs7252466	C	T	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	6156483	rs4807840	T	C	8403.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,324:1.00:324
chr19	6161110	.	C	CAAAA	1022.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.28;QD=26.91;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:4,34:0.89:38
chr19	6190807	.	CACAT	C	48.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.44;ReadPosRankSum=-1.424;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:16,4:0.20:20
chr19	6190809	rs72157010	CAT	C	432.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr19	6190823	rs72359890	TACACACACAC	T	665.19	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,15:0.88:17
chr19	6279833	.	TCGCCGCCGC	T	722.73	.	AC=2;AF=1.00;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	6279895	.	G	GCGC	1383.80	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr19	6312290	rs72981971	T	C	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	6361845	rs57445020	G	GC	6908.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	6364742	.	G	GT	346.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=6.053;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.683;QD=3.94;ReadPosRankSum=-0.176;SOR=0.275;set=HC	GT:AD:AF:DP	0/1:55,33:0.38:88
chr19	6415443	rs1616305	T	C	14553.77	.	AC=2;AF=1.00;AN=2;DB;DP=564;set=Intersection	GT:AD:AF:DP	1/1:2,559:1.00:561
chr19	6415795	rs8103311	T	C	1931.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	6417855	rs2258496	G	A	9847.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr19	6419275	rs2305059	A	G	4906.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	6426271	rs66673060	CCAGCCT	C	838.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.02;QD=41.94;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	6436304	rs2860182	TC	CT	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	6469042	rs150679157	CT	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.97;ReadPosRankSum=-0.970;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:126,43:0.25:169
chr19	6475163	rs12976944	A	C	6096.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	6475613	rs3745571	T	C	9728.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	6477256	rs348398	G	T	4034.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	6477324	rs348399	G	C	4444.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	6495064	rs446199	C	G	288.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	6585921	rs453462	G	C	304.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	6589960	rs11361927	CT	C	2670.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	6665020	rs344560	T	C	17826.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,663:1.00:663
chr19	6678474	rs11569565	G	A	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	6679360	rs344555	T	C	3419.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	6685304	rs2241393	G	C	243.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	6689309	rs370834365	CCT	C	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.187;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=4.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=1.141;SOR=1.417;set=HC	GT:AD:AF:DP	0/1:82,18:0.18:100
chr19	6689371	.	C	CCTCT	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.69;MQRankSum=0.000;QD=12.62;ReadPosRankSum=-1.491;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chr19	6696342	rs2287848	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	6696496	rs2287847	T	C	12506.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr19	6696557	rs2287846	C	G	14695.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr19	6696597	rs2287845	G	A	11305.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr19	6696691	rs2355315	G	T	6273.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=1.677;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	6696699	rs2253756	G	A	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.16;SOR=1.680;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	6696789	rs2355316	G	A	1549.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	6697214	rs5826946	AT	A	421.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	6697406	rs423490	A	G	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr19	6697829	rs366510	G	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	6702042	rs433594	A	G	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	6702157	rs428453	C	G	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	6702246	rs432823	T	C	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	6702598	rs406514	G	A	6919.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	6708107	rs10659507	T	TTCTC	3816.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.37;SOR=3.109;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	6709848	rs2230204	C	T	3968.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	6710572	rs189367	G	A	603.79	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.982;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=6.214;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.16;ReadPosRankSum=2.563;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:2,22:0.92:24
chr19	6710584	rs112132860	GGA	G	976.75	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.241;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.387;QD=30.52;ReadPosRankSum=-0.475;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr19	6731057	rs2279624	T	C	3823.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	6731766	rs1702375	C	A	585.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	6732018	rs2291666	C	T	10515.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	6733517	rs339395	A	G	3498.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	6737481	rs340138	T	C	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr19	6737509	rs339401	G	A	12777.77	.	AC=2;AF=1.00;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr19	6739934	rs344633	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	6743399	rs381897	A	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	6743405	rs2277986	A	G	1077.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.45;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	6744762	rs339405	A	C	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	6745995	rs149788098	C	T	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	6754774	rs168129	C	A	8394.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	6760566	.	CA	C	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.66;ReadPosRankSum=1.478;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:25,14:0.36:39
chr19	6820951	rs164016	C	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	6825032	rs12979659	T	C	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	6828040	rs164022	G	C	5260.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	6832060	rs625828	T	A	1668.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	6833072	rs308200	C	T	312.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	6833162	rs78698684	CT	C	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.032;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:29,13:0.31:42
chr19	6833777	rs186295	A	G	2092.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	6833989	rs308199	G	T	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	6836271	rs308196	A	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	6836836	rs308194	G	A	1853.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	6836844	rs6146454	GACACACACACACACACACACAC	G	1816.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	6908675	rs34044572	C	CT,CTT	1397.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.795;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.28;ReadPosRankSum=-1.503;SOR=0.477;set=HC	GT:AD:AF:DP	1/2:37,62,37:0.46,0.27:136
chr19	6921697	rs3217675	G	GT	2108.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:1,88:0.99:89
chr19	6921868	rs7256147	G	A	1227.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	6924672	rs2290634	A	G	7045.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	6935033	rs11666741	C	A	7069.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	6960834	rs459883	A	C	873.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	6961182	rs460698	G	A	831.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	6974564	rs466123	C	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	6977211	rs4807919	A	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	6977409	rs7255801	C	T	4709.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	6980939	rs2035972	T	C	1122.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	6981582	rs2035971	A	T	2196.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	6981849	rs1874003	T	C	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	6981885	rs1874002	T	C	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	6984708	rs7247453	G	A	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	6984927	rs34752448	T	C	690.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	6988662	rs8107779	T	C	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	6988791	rs8103492	G	C	3399.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.56;SOR=0.757;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	6988914	rs1466715	A	G	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	6990671	rs73920279	G	A	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	6990702	rs12972391	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	6991010	rs8108538	C	T	1006.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	7005905	rs62126094	T	A	252.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.11;QD=28.09;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	7011766	rs6510942	T	C	134.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.47;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	7074872	rs2967648	G	A	750.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	7116963	rs1051690	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	7122511	rs34073323	AT	A	2186.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	7150418	rs2252673	C	G	414.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	7166043	.	TA	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-1.006;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:43,18:0.30:61
chr19	7293898	rs7508518	G	C	455.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	7427607	rs11260007	T	C	2666.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	7507010	.	CCCTT	C	947.73	.	AC=2;AF=1.00;AN=2;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.10;QD=39.49;SOR=2.124;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	7531690	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.762;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.529;QD=1.74;ReadPosRankSum=0.616;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:19,9:0.32:28
chr19	7538117	rs11880140	A	G	4614.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	7538314	rs138733805	C	T	1298.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	7568966	rs113706007	A	ATCTCTCTCTCTC	2200.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;QD=43.15;SOR=0.883;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	7569282	rs484870	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	7570729	rs683729	G	A	2027.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	7570978	rs685034	T	C	9208.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	7571094	rs3826735	G	T	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:3,75:0.96:78
chr19	7584223	rs11555037	A	G	21675.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,817:1.00:817
chr19	7593589	rs612862	C	T	5205.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	7594159	rs625910	G	A	5701.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	7595121	rs11880842	C	T	1478.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	7606737	rs492092	G	C	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	7607023	rs577866	T	C	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	7607564	rs620744	T	C	3843.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	7625864	rs35902090	G	GC	7416.73	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:6,256:0.98:262
chr19	7626013	rs11307097	AC	A	9713.73	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	7626669	rs2303178	G	A	8586.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:2,325:0.99:327
chr19	7670033	rs56244737	G	GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGT	3959.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.97;QD=44.00;SOR=1.042;set=HC	GT:AD:AF:DP	1/2:0,38,52:0.42,0.58:90
chr19	7671042	.	A	ACCC	210.80	.	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.16;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	7675917	rs747569	C	G	5690.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	7678127	rs794088	C	T	125.90	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	7684450	rs143149642	GGGGGGAT	G	3303.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	7692058	rs794084	G	A	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.11;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	7692060	rs4134827	G	A	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	7694393	rs4134809	G	A	14727.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,550:1.00:550
chr19	7695620	rs11260004	T	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	7696294	rs376677773	GT	G	153.87	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	7697168	rs2279042	C	T	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	7697779	rs56272042	T	C	8087.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=43.48;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	7697787	rs56262542	T	C	7762.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=44.87;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	7697885	rs78473084	TGA	T	1646.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	7698226	rs151032321	C	CTAAT	4732.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=44.23;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	7698320	rs1862514	C	T	2988.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;QD=26.22;SOR=0.965;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	7703490	.	T	TA	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=-0.066;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:11,11:0.50:22
chr19	7703605	rs8104339	C	T	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	7704815	rs138165596	TATGTGTGTGC	T	1723.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	7708214	rs2303115	G	A	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.41;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	7710040	rs929807	T	C	6638.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	7710210	rs889187	A	G	3096.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	7710269	rs710951	A	G	1413.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	7711221	rs10001	T	C	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	7712277	rs6791	A	G	5053.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	7712425	rs34976997	G	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	7712474	rs794074	G	A	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	7712585	rs794073	T	G	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	7735089	rs10402265	G	C	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	7735318	rs112669651	AGATGATGAT	A	1002.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=2.400;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	7743821	rs72996468	A	G	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	7743879	rs4804766	C	T	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.32;SOR=1.225;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	7744075	rs112807024	ACC	A	843.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	7747129	rs80109157	G	C	992.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	7747293	rs6952	T	G	3617.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	7754912	rs4996980	G	A	3340.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.76;SOR=2.271;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	7754917	rs4996979	T	C	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.76;SOR=2.055;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	7754942	rs4996978	A	C	3297.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	7754964	rs4996977	T	C	8690.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.74;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	7754968	rs4996976	A	G	9169.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=1.096;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	7754971	rs4996975	C	T	9219.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.54;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	7755056	rs2228138	G	A	9139.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	7755083	rs1042429	C	T	8820.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr19	7755159	rs4996973	A	G	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	7755213	rs4996972	C	T	6846.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	7755285	rs28364072	A	G	11941.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	7755469	rs2277995	T	C	5613.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.86;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	7755472	rs74927160	G	T	5518.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.61;SOR=2.613;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	7755478	rs75584211	TG	CA	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.77;SOR=2.792;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	7755482	rs77121754	A	G	4831.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.02;SOR=2.768;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	7755485	rs76013233	GC	AT	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.52;SOR=3.000;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	7755518	rs2277994	A	G	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	7761472	rs35446135	G	A	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	7761494	rs35085623	CTT	C	1672.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	7761667	rs66479741	A	G	8117.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	7761812	rs2277989	A	G	9328.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr19	7762380	rs113716290	TCCCCTGCAA	T	5726.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	7762653	rs35652200	CTA	C	1496.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:2,56:0.97:58
chr19	7763045	rs7249320	C	A	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	7764157	rs12984870	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	7764363	rs61499635	GTTTTT	G	3112.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr19	7764436	rs12980031	G	T	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	7764545	rs3214456	G	GC	1591.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	7764741	rs2287867	G	A	2450.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	7764772	rs2287868	T	C	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	7794605	rs2277997	T	C	6755.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:3,254:0.99:257
chr19	7795813	rs6603117	G	A	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	7796235	rs12978097	C	T	3217.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	7796366	rs12978401	C	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	7796497	rs11260026	C	G	4972.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	7830662	.	A	G	2965	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=3;HapScore=1;MGOF=1;MMLQ=23;MQ=54.45;NF=68;NR=87;PP=2965;QD=20;SC=GAGCTGACCCAGCTGAAGGCT;SbPval=0.54;Source=Platypus;TC=155;TCF=68;TCR=87;TR=155;WE=7830670;WS=7830652;set=Platypus	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	7830936	.	GGA	CCG	880	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=51.45;NF=21;NR=10;PP=880;QD=30.4344475762;SC=AGGAGCTGACGGAGCTGAAGG;SbPval=0.85;Source=Platypus;TC=40;TCF=23;TCR=17;TR=31;WE=7830946;WS=7830926;set=Platypus	GT:AD:AF:DP	1/1:9,31:0.78:40
chr19	7831166	rs868875	A	G	2079.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	7831226	rs868876	A	T	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	7831429	rs475896	C	G	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	7831628	rs2277998	G	A	12783.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr19	7831700	rs562607	G	C	5697.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	7833690	rs3745376	G	T	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	7833940	rs67057658	G	A	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	7833982	rs1045997	C	T	813.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	7916475	rs2452012	T	C	12674.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr19	7916620	rs580790	A	G	3635.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	7918103	rs526464	A	G	10090.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr19	7928462	rs10410459	T	C	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:0,251:1.00:251
chr19	7935634	rs73500091	A	G	1886.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=26.57;SOR=1.852;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	7938306	rs58971992	A	AG	3178.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	7944348	rs56796931	TC	T	6158.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	7963914	rs524029	A	C	12639.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr19	7963949	rs2042919	A	G	8135.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	7963976	rs2115108	T	C	6580.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	7964727	rs3745382	G	A	8868.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	7965339	rs3745383	C	T	9116.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	7969486	rs3810211	C	T	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	7970635	rs4804833	A	G	5594.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	7975464	rs11879199	A	C	14060.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr19	7976116	rs10412007	T	C	8928.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr19	7976529	rs2303700	T	C	772.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	7986638	rs475002	C	G	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	7990155	rs150061390	G	C	4377.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	7992249	rs34491552	TG	T	675.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	7995906	rs4804240	G	A	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	7995918	rs4804241	C	A	4519.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	7997870	rs4804243	C	A	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	7999874	rs9677009	C	T	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	8000045	rs35989631	C	T	1337.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=24.77;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	8000052	rs34802817	C	CTT	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.199;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=16.83;ReadPosRankSum=-0.341;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:4,21:0.84:25
chr19	8000104	rs3745387	A	G	656.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	8000146	rs3745388	A	G	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	8028544	rs14394	A	G	7613.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	8032680	rs1077340	C	T	7640.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	8045862	rs75461160	G	A	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	8046239	rs145288081	CT	C	200.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.887;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.157;QD=16.73;ReadPosRankSum=-1.534;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	8122767	rs2303165	T	C	8193.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	8137850	.	C	CGTGT,CGTGTGT	1033.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.202;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.639;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.25;MQRankSum=0.535;QD=26.51;ReadPosRankSum=0.293;SOR=1.148;set=HC	GT:AD:AF:DP	1/2:7,15,17:0.38,0.44:39
chr19	8137902	rs7254691	C	T	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.07;QD=45.02;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	8137908	rs28657412	C	T	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=42.52;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	8138054	rs7257948	C	A	7596.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	8145921	rs2303168	C	T	3257.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	8146114	rs2303169	T	C	1203.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	8146510	rs35618038	G	A	544.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr19	8148301	rs17202517	G	A	9313.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	8159362	rs7245429	G	T	2453.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	8159409	rs7245552	G	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	8160334	rs12608849	G	A	5269.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	8160517	rs10413994	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	8160812	rs10404258	C	T	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	8165868	rs56182050	G	A	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	8167830	rs12986396	A	G	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	8167873	rs56921504	A	G	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	8168326	rs3865463	G	A	217.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	8171252	rs2126971	A	G	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	8174650	rs3813779	A	G	4072.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	8174724	rs11672038	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	8176463	rs11260057	A	G	6433.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	8176919	rs4804264	C	T	5077.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.77;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	8176945	rs4804063	T	C	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.25;SOR=0.796;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	8176947	rs146679363	T	C	9868.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.66;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	8181483	rs1038081	C	T	5344.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	8186281	rs57957109	A	AG	3637.73	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	8188239	.	G	GA	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-1.453;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:54,13:0.19:67
chr19	8188250	rs10419582	G	A	1017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=4.801;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.90;ReadPosRankSum=-1.042;SOR=1.211;set=HC	GT:AD:AF:DP	0/1:11,53:0.83:64
chr19	8188935	rs4804064	G	A	3915.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	8188999	rs4804269	T	A	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	8190674	rs368396188	CA	C	382.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.196;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:6,30:0.83:36
chr19	8191184	rs35025963	C	T	3648.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.06;SOR=0.910;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	8191238	rs10906993	C	T	6800.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.32;SOR=0.758;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	8191248	rs10906994	A	G	6727.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	8191323	rs7260558	T	C	4522.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	8196073	rs67775982	G	A	1273.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	8196222	rs3813777	T	C	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	8196444	rs4804271	C	T	5588.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	8198144	rs112342830	A	AT	814.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	8206559	rs72993508	G	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.93;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	8206568	rs72993510	G	A	1648.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.28;SOR=3.556;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	8206748	rs12162233	G	A	11925.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	8207070	rs12162237	G	A	5779.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	8209926	rs899208	T	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	8210564	rs34627807	CA	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.136;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=6.435;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.081;SOR=2.712;set=HC	GT:AD:AF:DP	0/1:7,15:0.68:22
chr19	8210608	rs56025743	C	A	1938.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	8212163	rs56243829	C	T	12274.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,452:1.00:452
chr19	8315847	rs379983	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	8319194	rs12976441	A	C	291.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	8319206	.	C	CAAAAAAAA	358	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=20;HapScore=3;MGOF=6;MMLQ=24;MQ=47.65;NF=3;NR=0;PP=358;QD=120.333333333;SC=TACTCTGTCTCAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=19;TCF=14;TCR=5;TR=3;WE=8319214;WS=8319184;set=Platypus	GT:AD:AF:DP	1/1:16,3:0.16:19
chr19	8321946	rs36247	T	C	2363.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	8326904	rs36259	G	A	7361.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr19	8367033	rs250510	T	C	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	8370120	rs2232778	T	C	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	8381595	rs3214554	CCT	C	2438.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	8386306	rs2241592	G	A	2444.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	8386701	rs2241590	G	A	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	8387207	rs1057232	G	A	1426.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	8387619	rs4147653	TAGCCTCTG	T	3326.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	8389520	rs1019757	C	T	6403.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	8389723	rs2972571	T	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	8397700	rs145917648	AAAAAT	A	781.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	8398597	rs2913954	G	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	8398714	rs2009733	A	G	2665.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	8398975	rs2913955	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	8399628	rs710949	A	G	1065.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	8399709	rs890852	C	A	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	8399799	rs890851	G	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	8399849	rs890850	C	A	3152.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	8400749	rs2913956	C	A	316.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	8402645	rs2913958	A	T	7409.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:3,278:0.99:281
chr19	8436164	rs1044250	C	T	4384.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	8454098	rs35526858	C	CA	121.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=13.53;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	8454318	rs28364584	T	C	320.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.91;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8495765	rs2303180	G	A	1916.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	8495887	rs2303179	T	A	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	8503345	rs34099346	G	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	8503574	rs11259981	A	G	406.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	8528310	rs8102587	A	G	1889.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.62;SOR=1.362;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	8533504	rs7258281	T	C	3048.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.50;SOR=1.410;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	8533509	rs59319088	C	T	3097.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.02;SOR=1.308;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	8536373	rs12973706	A	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	8548175	rs1599871	A	C	1372.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	8551094	rs2230647	T	C	8309.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	8551852	rs11669139	A	G	3228.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	8553630	rs6992	C	T	3757.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	8555886	rs2303110	G	C	13087.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr19	8563456	rs2910435	C	G	3654.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	8564523	.	T	G	2965	.	AC=2;AF=1.00;AN=2;BRF=0.19;FR=1.0000;HP=4;HapScore=1;MGOF=29;MMLQ=22;MQ=59.9;NF=128;NR=103;PP=2965;QD=20;SC=GGGGCCTTCTTGGGGTGCTCG;SbPval=0.55;Source=Platypus;TC=231;TCF=128;TCR=103;TR=231;WE=8564531;WS=8564513;set=Platypus	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	8575765	rs3111564	C	G	1168.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.22;SOR=2.191;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	8587195	rs139911601	C	T	5822.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	8591233	.	GTC	G	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=2.382;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=2.410;QD=1.24;ReadPosRankSum=0.595;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr19	8601051	rs369541772	GTC	G	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.517;QD=1.85;ReadPosRankSum=-0.502;SOR=0.295;set=HC	GT:AD:AF:DP	0/1:93,21:0.18:114
chr19	8645786	rs7252299	A	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	8646014	rs369050914	CTTTTTTTTTT	C	518.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.90;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	8660890	rs28433973	G	A	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	8662350	rs7248483	C	T	485.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.57;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	8668885	rs36044688	CT	C	502.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.075;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.22;ReadPosRankSum=-0.981;SOR=1.108;set=HC	GT:AD:AF:DP	1/1:1,30:0.97:31
chr19	8669873	rs7260282	T	C	3355.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.63;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	8669931	rs7255721	G	C	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	8808373	rs4804079	G	T	6049.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	8808900	rs10410943	A	G	6725.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,260:1.00:261
chr19	8808942	rs2340550	A	G	6680.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	8923117	rs250315	A	G	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	8932092	rs2910347	G	A	1679.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	8953801	rs2969292	T	C	3306.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	8953922	rs2972588	C	T	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	8961772	rs2972591	A	G	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	8961981	rs1035442	C	G	10062.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	8962434	.	C	CTTTTTTT	179.79	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=35.96;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	8962461	rs1964289	G	C	143.81	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	8982084	rs3752139	C	G	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=3.784;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	8987133	rs3764555	T	C	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	8987348	rs150904213	A	AAG	512.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.86;QD=32.05;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	8992971	.	T	G	70.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.339;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-4.252;QD=2.62;ReadPosRankSum=-0.959;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr19	8992972	.	A	G	112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.212;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=5.444;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-4.252;QD=4.18;ReadPosRankSum=-0.862;SOR=2.187;set=HC	GT:AD:AF:DP	0/1:23,4:0.15:27
chr19	8992980	.	C	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.626;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=11.155;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-4.908;QD=6.25;ReadPosRankSum=-2.117;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr19	8992981	.	T	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.152;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=11.155;MLEAC=1;MLEAF=0.500;MQ=57.53;MQRankSum=-4.908;QD=6.25;ReadPosRankSum=-2.165;SOR=3.258;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr19	8992988	rs371102230	G	A	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.223;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=11.800;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-5.397;QD=6.06;ReadPosRankSum=-1.700;SOR=3.567;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chr19	8992993	rs114497462	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.060;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=11.781;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-5.491;QD=5.96;ReadPosRankSum=-0.965;SOR=3.737;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	8992996	.	T	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.868;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=11.781;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-5.491;QD=5.77;ReadPosRankSum=-0.894;SOR=3.737;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	8992997	.	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=11.781;MLEAC=1;MLEAF=0.500;MQ=57.23;MQRankSum=-5.491;QD=5.77;ReadPosRankSum=-0.849;SOR=3.737;set=HC	GT:AD:AF:DP	0/1:25,7:0.22:32
chr19	8993017	rs111468097	G	T	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.751;MLEAC=1;MLEAF=0.500;MQ=57.62;MQRankSum=-4.967;QD=2.77;ReadPosRankSum=0.332;SOR=1.251;set=HC	GT:AD:AF:DP	0/1:35,6:0.15:41
chr19	8993020	.	T	C	113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=57.73;MQRankSum=-5.120;QD=2.65;ReadPosRankSum=0.491;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:37,6:0.14:43
chr19	8993033	.	T	G	287.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.701;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=10.368;MLEAC=1;MLEAF=0.500;MQ=56.90;MQRankSum=-6.920;QD=5.76;ReadPosRankSum=-1.546;SOR=2.405;set=HC	GT:AD:AF:DP	0/1:39,11:0.22:50
chr19	8993036	.	G	T	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=10.099;MLEAC=1;MLEAF=0.500;MQ=56.96;MQRankSum=-6.994;QD=5.58;ReadPosRankSum=-1.765;SOR=2.321;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr19	8993041	.	A	G	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=10.141;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-7.279;QD=5.00;ReadPosRankSum=-1.884;SOR=2.336;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr19	8993048	.	C	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=7.955;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-7.496;QD=4.63;ReadPosRankSum=-1.668;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:48,10:0.17:58
chr19	8994113	rs2009979	T	C	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	8994285	rs752410	T	A	2289.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	8994373	rs873869	A	G	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	8995853	rs11672574	T	C	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	8997415	.	G	A	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;ClippingRankSum=0.000;DP=101;ExcessHet=3.0103;FS=5.103;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-8.812;QD=1.02;ReadPosRankSum=-3.557;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:91,10:0.10:101
chr19	8997421	.	A	C	166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=4.658;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-9.296;QD=1.52;ReadPosRankSum=-2.623;SOR=0.563;set=HC	GT:AD:AF:DP	0/1:99,11:0.10:110
chr19	8997424	.	G	A	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.161;MLEAC=1;MLEAF=0.500;MQ=58.48;MQRankSum=-9.622;QD=1.48;ReadPosRankSum=-2.839;SOR=0.440;set=HC	GT:AD:AF:DP	0/1:102,13:0.11:115
chr19	8997454	rs76629162	G	A	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.51;MQRankSum=-10.598;QD=1.97;ReadPosRankSum=1.363;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:142,19:0.12:161
chr19	8997463	rs73001893	C	T	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-12.038;QD=1.57;ReadPosRankSum=1.823;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:158,19:0.11:177
chr19	8997472	rs113387108	C	T	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-12.316;QD=1.36;ReadPosRankSum=1.482;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:166,19:0.10:185
chr19	8997481	.	C	A	188.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242;ClippingRankSum=0.000;DP=192;ExcessHet=3.0103;FS=2.062;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-12.491;QD=0.98;ReadPosRankSum=-0.343;SOR=1.027;set=HC	GT:AD:AF:DP	0/1:174,18:0.09:192
chr19	8997482	.	C	T	194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.605;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-12.591;QD=1.00;ReadPosRankSum=-0.524;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:177,18:0.09:195
chr19	8997499	.	G	A	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.606;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=5.038;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-13.067;QD=0.20;ReadPosRankSum=-4.003;SOR=1.366;set=HC	GT:AD:AF:DP	0/1:195,17:0.08:212
chr19	8998532	rs57902801	T	C	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	8998830	.	G	C	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.375;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=13.165;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-7.624;QD=1.81;ReadPosRankSum=-0.159;SOR=3.324;set=HC	GT:AD:AF:DP	0/1:61,8:0.12:69
chr19	8998832	.	AT	A	114.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.959;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=13.057;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-7.508;QD=1.71;ReadPosRankSum=-0.223;SOR=3.287;set=HC	GT:AD:AF:DP	0/1:59,8:0.12:67
chr19	8998834	.	T	G	129.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.568;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=10.267;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-7.449;QD=1.97;ReadPosRankSum=-0.344;SOR=3.198;set=HC	GT:AD:AF:DP	0/1:58,8:0.12:66
chr19	8998837	.	T	TGA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.592;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=13.290;MLEAC=1;MLEAF=0.500;MQ=58.77;MQRankSum=-7.086;QD=2.21;ReadPosRankSum=-1.023;SOR=3.368;set=HC	GT:AD:AF:DP	0/1:52,8:0.13:60
chr19	8998839	.	GAC	G	141.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=10.543;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-7.381;QD=2.53;ReadPosRankSum=-1.165;SOR=2.998;set=HC	GT:AD:AF:DP	0/1:49,7:0.12:56
chr19	8998851	.	T	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.086;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=5.182;MLEAC=1;MLEAF=0.500;MQ=58.83;MQRankSum=-6.886;QD=1.85;ReadPosRankSum=-1.381;SOR=2.244;set=HC	GT:AD:AF:DP	0/1:44,5:0.10:49
chr19	8998857	.	G	T	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.402;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.162;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-6.588;QD=1.11;ReadPosRankSum=-2.247;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr19	8998863	.	G	A	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=5.218;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-6.588;QD=1.17;ReadPosRankSum=-2.591;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:40,5:0.11:45
chr19	8999383	rs79909361	A	G	3421.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-7.668;QD=11.72;ReadPosRankSum=0.570;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:197,95:0.33:292
chr19	8999386	rs77049866	A	G	3554.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-7.562;QD=11.73;ReadPosRankSum=-0.247;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:200,103:0.34:303
chr19	8999429	.	G	T	2394.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DP=382;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=-1.703;QD=6.29;ReadPosRankSum=2.263;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:301,80:0.21:381
chr19	8999438	rs77891947	A	T	5708.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=9.304;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-5.896;QD=14.87;ReadPosRankSum=1.967;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:232,152:0.40:384
chr19	8999441	rs80293661	G	A	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.867;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=13.008;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-5.947;QD=5.20;ReadPosRankSum=1.152;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:318,72:0.18:390
chr19	8999443	.	T	C	2028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DP=392;ExcessHet=3.0103;FS=13.008;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-5.947;QD=5.20;ReadPosRankSum=1.412;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:318,72:0.18:390
chr19	8999449	rs76798407	G	T	5566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=6.671;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-6.117;QD=14.20;ReadPosRankSum=2.470;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:240,152:0.39:392
chr19	8999453	rs11085765	C	T	4971.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:161,232:0.59:393
chr19	8999478	rs73493659	T	C	3681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=8.723;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-6.273;QD=9.51;ReadPosRankSum=0.445;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:252,135:0.35:387
chr19	8999497	.	G	GACCA	1823.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DP=364;ExcessHet=3.0103;FS=16.004;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-10.129;QD=5.48;ReadPosRankSum=2.406;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:257,76:0.23:333
chr19	8999498	.	GCTTT	G	1019.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.609;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=10.021;MLEAC=1;MLEAF=0.500;MQ=58.72;MQRankSum=-10.807;QD=3.13;ReadPosRankSum=2.078;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:282,44:0.13:326
chr19	8999502	.	T	TCCGA	301.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=7.497;ClippingRankSum=0.000;DP=328;ExcessHet=3.0103;FS=73.162;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-0.891;QD=0.93;ReadPosRankSum=0.727;SOR=6.520;set=HC	GT:AD:AF:DP	0/1:296,30:0.09:326
chr19	8999511	rs79907258	G	A	2278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.892;ClippingRankSum=0.000;DB;DP=318;ExcessHet=3.0103;FS=55.169;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-9.884;QD=7.21;ReadPosRankSum=0.337;SOR=2.825;set=HC	GT:AD:AF:DP	0/1:243,73:0.23:316
chr19	8999512	.	G	C	175.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.716;ClippingRankSum=0.000;DP=318;ExcessHet=3.0103;FS=61.063;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-1.211;QD=0.56;ReadPosRankSum=0.605;SOR=6.154;set=HC	GT:AD:AF:DP	0/1:290,26:0.08:316
chr19	8999517	.	T	A	1009.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.259;ClippingRankSum=0.000;DP=306;ExcessHet=3.0103;FS=8.666;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-10.827;QD=3.32;ReadPosRankSum=-1.842;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:261,43:0.14:304
chr19	8999518	rs77650227	A	G	2227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.847;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=44.225;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-10.271;QD=7.38;ReadPosRankSum=-0.943;SOR=2.611;set=HC	GT:AD:AF:DP	0/1:234,68:0.23:302
chr19	8999522	.	G	A	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.182;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=52.953;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-1.364;QD=0.16;ReadPosRankSum=0.505;SOR=5.857;set=HC	GT:AD:AF:DP	0/1:277,22:0.07:299
chr19	8999530	.	C	T	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.270;ClippingRankSum=0.000;DP=284;ExcessHet=3.0103;FS=55.444;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-1.346;QD=0.43;ReadPosRankSum=0.181;SOR=5.943;set=HC	GT:AD:AF:DP	0/1:259,23:0.08:282
chr19	8999531	.	A	G	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.593;ClippingRankSum=0.000;DP=285;ExcessHet=3.0103;FS=30.926;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-10.961;QD=5.77;ReadPosRankSum=-1.968;SOR=2.261;set=HC	GT:AD:AF:DP	0/1:227,56:0.20:283
chr19	8999538	rs78334969	T	C	1417.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.960;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=37.949;MLEAC=1;MLEAF=0.500;MQ=58.65;MQRankSum=-11.659;QD=5.12;ReadPosRankSum=-1.517;SOR=2.768;set=HC	GT:AD:AF:DP	0/1:229,48:0.17:277
chr19	8999539	rs76810971	T	C	1372.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.655;ClippingRankSum=0.000;DB;DP=278;ExcessHet=3.0103;FS=35.706;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-11.761;QD=4.99;ReadPosRankSum=-1.517;SOR=2.704;set=HC	GT:AD:AF:DP	0/1:228,47:0.17:275
chr19	8999540	rs75422108	G	A	1201.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.729;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=31.469;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-11.528;QD=4.43;ReadPosRankSum=-2.037;SOR=2.542;set=HC	GT:AD:AF:DP	0/1:227,44:0.16:271
chr19	8999554	.	CC	GT	886.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.838;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=29.027;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-11.179;QD=3.69;ReadPosRankSum=-3.131;SOR=2.747;set=HC	GT:AD:AF:DP	0/1:205,35:0.15:240
chr19	8999560	rs77501519	TG	CA	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.891;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=22.658;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.54;MQRankSum=-11.627;QD=3.18;ReadPosRankSum=-3.163;SOR=2.541;set=HC	GT:AD:AF:DP	0/1:199,32:0.14:231
chr19	8999564	.	C	T	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.236;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=18.751;MLEAC=1;MLEAF=0.500;MQ=58.49;MQRankSum=-11.268;QD=2.92;ReadPosRankSum=-3.309;SOR=2.295;set=HC	GT:AD:AF:DP	0/1:192,29:0.13:221
chr19	8999575	.	C	T	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.931;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=24.064;MLEAC=1;MLEAF=0.500;MQ=58.62;MQRankSum=-10.385;QD=2.61;ReadPosRankSum=-3.613;SOR=2.864;set=HC	GT:AD:AF:DP	0/1:167,25:0.13:192
chr19	8999580	.	T	G	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.909;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=15.608;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-9.234;QD=2.09;ReadPosRankSum=-2.905;SOR=2.401;set=HC	GT:AD:AF:DP	0/1:165,20:0.11:185
chr19	8999588	.	A	T	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.920;ClippingRankSum=0.000;DP=172;ExcessHet=3.0103;FS=16.934;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-9.433;QD=1.75;ReadPosRankSum=-2.236;SOR=2.645;set=HC	GT:AD:AF:DP	0/1:152,18:0.11:170
chr19	8999590	.	A	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.752;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=10.738;MLEAC=1;MLEAF=0.500;MQ=58.90;MQRankSum=-9.439;QD=1.07;ReadPosRankSum=-1.249;SOR=2.177;set=HC	GT:AD:AF:DP	0/1:151,14:0.08:165
chr19	8999596	.	C	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.403;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=19.894;MLEAC=1;MLEAF=0.500;MQ=58.97;MQRankSum=-9.528;QD=1.28;ReadPosRankSum=-1.875;SOR=3.291;set=HC	GT:AD:AF:DP	0/1:144,15:0.09:159
chr19	8999598	.	C	T	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.312;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=17.450;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-9.206;QD=1.08;ReadPosRankSum=-1.674;SOR=3.148;set=HC	GT:AD:AF:DP	0/1:142,14:0.09:156
chr19	8999675	rs11085766	A	C	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	9000169	.	CA	TG	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;ClippingRankSum=0.000;DP=162;ExcessHet=3.0103;FS=7.667;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=-12.320;QD=3.13;ReadPosRankSum=-4.946;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:139,23:0.14:162
chr19	9000185	.	A	G	845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=20.171;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-13.204;QD=4.60;ReadPosRankSum=-3.485;SOR=2.285;set=HC	GT:AD:AF:DP	0/1:152,32:0.17:184
chr19	9000187	.	C	T	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=22.518;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-13.315;QD=5.15;ReadPosRankSum=-3.055;SOR=2.411;set=HC	GT:AD:AF:DP	0/1:155,32:0.17:187
chr19	9000194	.	G	A	1028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.014;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=31.241;MLEAC=1;MLEAF=0.500;MQ=58.03;MQRankSum=-13.721;QD=5.20;ReadPosRankSum=-2.463;SOR=2.784;set=HC	GT:AD:AF:DP	0/1:161,37:0.19:198
chr19	9000205	.	CA	AG	1091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=195;ExcessHet=3.0103;FS=34.173;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-13.575;QD=5.63;ReadPosRankSum=-2.430;SOR=2.952;set=HC	GT:AD:AF:DP	0/1:156,38:0.20:194
chr19	9000326	rs35743385	G	C	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	9001822	rs12976111	A	G	9172.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.10;SOR=0.772;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	9001833	rs12976122	A	G	9001.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.69;SOR=0.745;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	9001833	.	ATG	GTA	2947	.	AC=2;AF=1.00;AN=2;BRF=0.21;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=21;MQ=60.0;NF=93;NR=77;PP=2947;QD=20;SC=GTACTCACTCATGGGTCCAGA;SbPval=0.57;Source=Platypus;TC=171;TCF=93;TCR=78;TR=170;WE=9001843;WS=9001812;set=Platypus	GT:AD:AF:DP	1/1:1,170:0.99:171
chr19	9001835	rs12985778	G	A	8934.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.67;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	9001986	rs12461757	C	A	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	9002113	rs12462672	A	G	1072.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	9002493	rs77972891	T	C	3973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.233;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=4.256;MLEAC=1;MLEAF=0.500;MQ=57.46;MQRankSum=-11.973;QD=15.58;ReadPosRankSum=0.040;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:147,108:0.42:255
chr19	9002504	rs78327556	T	C	3862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.350;ClippingRankSum=0.000;DB;DP=258;ExcessHet=3.0103;FS=6.834;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-12.033;QD=14.97;ReadPosRankSum=2.372;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:154,104:0.40:258
chr19	9002519	rs150783178	G	C	3674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.916;ClippingRankSum=0.000;DB;DP=263;ExcessHet=3.0103;FS=8.901;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-12.350;QD=13.97;ReadPosRankSum=4.234;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:164,99:0.38:263
chr19	9002576	rs80214581	T	C	1596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.066;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=14.347;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=-14.894;QD=6.14;ReadPosRankSum=-2.587;SOR=1.516;set=HC	GT:AD:AF:DP	0/1:202,58:0.22:260
chr19	9002587	rs201053591	C	T	1374.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.338;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=14.746;MLEAC=1;MLEAF=0.500;MQ=58.06;MQRankSum=-15.391;QD=5.41;ReadPosRankSum=-4.446;SOR=1.640;set=HC	GT:AD:AF:DP	0/1:208,46:0.18:254
chr19	9002597	.	C	T	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.730;ClippingRankSum=0.000;DP=240;ExcessHet=3.0103;FS=22.052;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-15.427;QD=1.90;ReadPosRankSum=-3.195;SOR=2.499;set=HC	GT:AD:AF:DP	0/1:214,26:0.11:240
chr19	9002612	.	TG	GA	110.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.097;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=27.003;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-15.119;QD=0.48;ReadPosRankSum=-3.094;SOR=3.804;set=HC	GT:AD:AF:DP	0/1:216,14:0.06:230
chr19	9003618	rs11085776	C	T	3949.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:4,159:0.98:163
chr19	9003706	rs11085778	T	G	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	9003749	rs11085779	G	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	9005041	rs62118260	T	C	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	9005674	rs4804091	G	A	3136.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	9005719	rs4804375	A	G	2212.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	9006370	rs79341062	A	G	806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=11.416;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-8.128;QD=3.79;ReadPosRankSum=-2.002;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:160,53:0.25:213
chr19	9006463	rs11668219	C	G	5656.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	9009205	.	C	A	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.707;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.89;MQRankSum=-6.883;QD=1.79;ReadPosRankSum=0.000;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:43,6:0.12:49
chr19	9009206	.	A	T	81.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.519;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.97;MQRankSum=-7.028;QD=1.60;ReadPosRankSum=0.188;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:45,6:0.12:51
chr19	9009211	.	A	G	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-7.829;QD=3.54;ReadPosRankSum=-1.208;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:54,9:0.14:63
chr19	9009215	.	C	T	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=57.71;MQRankSum=-8.323;QD=2.84;ReadPosRankSum=-1.057;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:61,10:0.14:71
chr19	9009218	.	T	A	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.554;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=1.691;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-8.736;QD=2.20;ReadPosRankSum=-0.532;SOR=1.162;set=HC	GT:AD:AF:DP	0/1:68,10:0.13:78
chr19	9009223	.	A	G	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.150;ClippingRankSum=0.000;DP=93;ExcessHet=3.0103;FS=5.588;MLEAC=1;MLEAF=0.500;MQ=58.24;MQRankSum=-9.508;QD=1.78;ReadPosRankSum=0.228;SOR=1.703;set=HC	GT:AD:AF:DP	0/1:82,10:0.11:92
chr19	9009228	rs36189670	G	T	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.237;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=58.11;MQRankSum=-9.709;QD=1.55;ReadPosRankSum=-0.828;SOR=1.260;set=HC	GT:AD:AF:DP	0/1:84,12:0.12:96
chr19	9009239	.	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=3.783;MLEAC=1;MLEAF=0.500;MQ=57.83;MQRankSum=-10.816;QD=3.05;ReadPosRankSum=-1.159;SOR=0.342;set=HC	GT:AD:AF:DP	0/1:102,17:0.14:119
chr19	9009244	.	T	C	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=3.780;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-11.405;QD=2.52;ReadPosRankSum=-0.245;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:115,17:0.13:132
chr19	9009254	rs375943736	A	G	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.251;MLEAC=1;MLEAF=0.500;MQ=58.36;MQRankSum=-12.499;QD=1.64;ReadPosRankSum=1.264;SOR=0.415;set=HC	GT:AD:AF:DP	0/1:141,17:0.11:158
chr19	9009570	rs80323209	G	A	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=4.171;MLEAC=1;MLEAF=0.500;MQ=59.10;MQRankSum=-6.865;QD=4.74;ReadPosRankSum=-1.898;SOR=1.363;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr19	9009581	.	C	T	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.739;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.99;MQRankSum=-7.066;QD=2.53;ReadPosRankSum=-2.148;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:71,12:0.14:83
chr19	9009582	rs200548160	A	G	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.376;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-7.596;QD=2.44;ReadPosRankSum=-1.502;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:75,11:0.13:86
chr19	9010688	.	A	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.217;ClippingRankSum=0.000;DP=301;ExcessHet=3.0103;FS=21.751;MLEAC=1;MLEAF=0.500;MQ=59.43;MQRankSum=-15.517;QD=0.13;ReadPosRankSum=-0.236;SOR=2.657;set=HC	GT:AD:AF:DP	0/1:278,22:0.07:300
chr19	9010693	.	C	G	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.053;ClippingRankSum=0.000;DP=303;ExcessHet=3.0103;FS=21.843;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-15.570;QD=0.11;ReadPosRankSum=-0.914;SOR=2.710;set=HC	GT:AD:AF:DP	0/1:280,22:0.07:302
chr19	9010694	.	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.138;ClippingRankSum=0.000;DP=302;ExcessHet=3.0103;FS=21.763;MLEAC=1;MLEAF=0.500;MQ=59.49;MQRankSum=-15.462;QD=0.13;ReadPosRankSum=-0.544;SOR=2.610;set=HC	GT:AD:AF:DP	0/1:280,21:0.07:301
chr19	9012813	rs4992696	G	A	515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.595;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=10.090;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-11.230;QD=2.20;ReadPosRankSum=-2.846;SOR=1.629;set=HC	GT:AD:AF:DP	0/1:207,27:0.12:234
chr19	9012816	rs4992695	G	T	539.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.046;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=9.618;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-11.453;QD=2.28;ReadPosRankSum=-2.847;SOR=1.563;set=HC	GT:AD:AF:DP	0/1:208,29:0.12:237
chr19	9012819	rs4992694	T	A	1738.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.887;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=6.772;MLEAC=1;MLEAF=0.500;MQ=57.10;MQRankSum=-15.488;QD=6.93;ReadPosRankSum=-4.502;SOR=1.173;set=HC	GT:AD:AF:DP	0/1:199,52:0.21:251
chr19	9012823	rs4992693	T	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.031;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=6.616;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-9.960;QD=2.41;ReadPosRankSum=-2.644;SOR=1.221;set=HC	GT:AD:AF:DP	0/1:235,37:0.14:272
chr19	9012825	.	AT	TC	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=2.965;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-8.385;QD=0.77;ReadPosRankSum=-2.818;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:263,22:0.08:285
chr19	9012832	.	T	G	411.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719;ClippingRankSum=0.000;DP=332;ExcessHet=3.0103;FS=4.081;MLEAC=1;MLEAF=0.500;MQ=57.05;MQRankSum=-9.656;QD=1.25;ReadPosRankSum=-4.797;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:292,38:0.12:330
chr19	9012840	rs4992692	G	A	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;ClippingRankSum=0.000;DB;DP=390;ExcessHet=3.0103;FS=2.389;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-11.945;QD=7.19;ReadPosRankSum=-7.561;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:267,115:0.30:382
chr19	9012894	.	A	AG	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949;ClippingRankSum=0.000;DP=434;ExcessHet=3.0103;FS=22.206;MLEAC=1;MLEAF=0.500;MQ=56.56;MQRankSum=-8.565;QD=0.48;ReadPosRankSum=-2.834;SOR=2.895;set=HC	GT:AD:AF:DP	0/1:394,34:0.08:428
chr19	9012897	.	AG	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0.000;DP=410;ExcessHet=3.0103;FS=25.391;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-9.302;QD=0.52;ReadPosRankSum=-4.512;SOR=2.887;set=HC	GT:AD:AF:DP	0/1:373,34:0.08:407
chr19	9012905	.	T	TG	3529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978;ClippingRankSum=0.000;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.97;MQRankSum=-10.898;QD=9.57;ReadPosRankSum=5.249;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:265,104:0.28:369
chr19	9012908	rs77209900	A	G	202.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.210;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=44.937;MLEAC=1;MLEAF=0.500;MQ=57.28;MQRankSum=-8.986;QD=0.55;ReadPosRankSum=-5.811;SOR=3.401;set=HC	GT:AD:AF:DP	0/1:340,30:0.08:370
chr19	9012909	.	G	A	199.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.301;ClippingRankSum=0.000;DP=371;ExcessHet=3.0103;FS=44.849;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-8.938;QD=0.54;ReadPosRankSum=-6.043;SOR=3.401;set=HC	GT:AD:AF:DP	0/1:337,30:0.08:367
chr19	9012910	.	GT	G	3516.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DP=370;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-11.000;QD=9.58;ReadPosRankSum=5.852;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:263,104:0.28:367
chr19	9012913	.	G	A	222.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.073;ClippingRankSum=0.000;DP=363;ExcessHet=3.0103;FS=45.099;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-8.841;QD=0.62;ReadPosRankSum=-6.529;SOR=3.400;set=HC	GT:AD:AF:DP	0/1:331,30:0.08:361
chr19	9012918	rs75899847	C	T	3459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.428;MLEAC=1;MLEAF=0.500;MQ=57.27;MQRankSum=-10.455;QD=9.94;ReadPosRankSum=6.113;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:247,101:0.29:348
chr19	9012930	rs76135098	C	T	3112.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.513;MLEAC=1;MLEAF=0.500;MQ=58.13;MQRankSum=-12.583;QD=10.62;ReadPosRankSum=4.838;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:200,93:0.32:293
chr19	9012937	.	A	G	3213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022;ClippingRankSum=0.000;DP=276;ExcessHet=3.0103;FS=1.563;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-12.360;QD=11.73;ReadPosRankSum=3.977;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:185,89:0.32:274
chr19	9012947	.	G	A	3172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=1.658;MLEAC=1;MLEAF=0.500;MQ=58.50;MQRankSum=-11.410;QD=12.95;ReadPosRankSum=1.910;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:160,85:0.35:245
chr19	9012958	rs76003547	T	C	1350.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:126,70:0.36:196
chr19	9012977	rs78271560	A	G	1465.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.567;MLEAC=1;MLEAF=0.500;MQ=58.63;MQRankSum=-8.301;QD=11.92;ReadPosRankSum=-3.049;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:79,44:0.36:123
chr19	9012982	.	GA	AC	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.46;MQRankSum=-7.976;QD=13.25;ReadPosRankSum=-4.449;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:68,39:0.36:107
chr19	9012995	rs372792987	G	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=-8.851;QD=7.94;ReadPosRankSum=-4.382;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:59,23:0.28:82
chr19	9012999	.	C	CT	552.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-8.334;QD=7.68;ReadPosRankSum=-4.138;SOR=0.443;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr19	9013000	.	A	AAAT	498.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.627;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-8.223;QD=7.12;ReadPosRankSum=-4.501;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr19	9018458	rs138331829	A	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=5.265;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-10.289;QD=0.62;ReadPosRankSum=-5.738;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:91,17:0.16:108
chr19	9018476	rs112059772	G	A	537.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.586;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=7.749;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-10.866;QD=4.01;ReadPosRankSum=-2.111;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:111,23:0.17:134
chr19	9018479	rs111639147	G	T	531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=7.603;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-11.035;QD=3.85;ReadPosRankSum=-1.414;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:115,23:0.17:138
chr19	9018508	rs74488264	T	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=6.068;MLEAC=1;MLEAF=0.500;MQ=57.68;MQRankSum=-10.916;QD=0.58;ReadPosRankSum=3.088;SOR=0.949;set=HC	GT:AD:AF:DP	0/1:125,22:0.15:147
chr19	9018539	.	CA	TG	380.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.097;ClippingRankSum=0.000;DP=159;ExcessHet=3.0103;FS=5.975;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-10.937;QD=2.39;ReadPosRankSum=0.848;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:137,22:0.14:159
chr19	9018573	.	ATT	GGG	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.473;ClippingRankSum=0.000;DP=136;ExcessHet=3.0103;FS=7.700;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-10.454;QD=1.45;ReadPosRankSum=-3.580;SOR=1.774;set=HC	GT:AD:AF:DP	0/1:121,15:0.11:136
chr19	9018577	.	A	G	156.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.917;ClippingRankSum=0.000;DP=130;ExcessHet=3.0103;FS=4.645;MLEAC=1;MLEAF=0.500;MQ=58.29;MQRankSum=-9.862;QD=1.21;ReadPosRankSum=-2.992;SOR=1.613;set=HC	GT:AD:AF:DP	0/1:119,11:0.08:130
chr19	9019348	.	A	G	656.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.245;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=9.080;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-6.137;QD=4.08;ReadPosRankSum=0.018;SOR=1.619;set=HC	GT:AD:AF:DP	0/1:135,26:0.16:161
chr19	9019352	.	T	C	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.066;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=7.454;MLEAC=1;MLEAF=0.500;MQ=58.82;MQRankSum=-6.026;QD=4.27;ReadPosRankSum=-0.105;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:130,26:0.17:156
chr19	9019353	.	G	T	671.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=7.473;MLEAC=1;MLEAF=0.500;MQ=58.81;MQRankSum=-5.980;QD=4.36;ReadPosRankSum=-0.206;SOR=1.558;set=HC	GT:AD:AF:DP	0/1:128,26:0.17:154
chr19	9019371	.	A	C	423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.956;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=19.420;MLEAC=1;MLEAF=0.500;MQ=58.79;MQRankSum=-5.917;QD=3.56;ReadPosRankSum=1.342;SOR=3.356;set=HC	GT:AD:AF:DP	0/1:101,18:0.15:119
chr19	9019374	.	A	G	429.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.323;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=19.595;MLEAC=1;MLEAF=0.500;MQ=58.69;MQRankSum=-5.656;QD=3.91;ReadPosRankSum=0.722;SOR=3.296;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr19	9019376	.	A	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.044;ClippingRankSum=0.000;DP=114;ExcessHet=3.0103;FS=19.637;MLEAC=1;MLEAF=0.500;MQ=58.70;MQRankSum=-5.686;QD=4.24;ReadPosRankSum=0.666;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:93,18:0.16:111
chr19	9019377	.	A	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.182;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=19.594;MLEAC=1;MLEAF=0.500;MQ=58.71;MQRankSum=-5.715;QD=4.20;ReadPosRankSum=0.592;SOR=3.320;set=HC	GT:AD:AF:DP	0/1:94,18:0.16:112
chr19	9019378	.	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.941;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=22.107;MLEAC=1;MLEAF=0.500;MQ=58.59;MQRankSum=-6.005;QD=4.20;ReadPosRankSum=0.088;SOR=3.457;set=HC	GT:AD:AF:DP	0/1:93,19:0.17:112
chr19	9019605	rs12981679	C	G	2031.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	9020154	rs11882881	A	G	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	9024758	rs1862463	T	C	2251.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	9024994	rs67631215	C	T	3059.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	9025536	.	G	T	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=4.941;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=-7.317;QD=1.27;ReadPosRankSum=-3.484;SOR=1.907;set=HC	GT:AD:AF:DP	0/1:49,6:0.11:55
chr19	9025539	.	T	C	54.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;ClippingRankSum=0.000;DP=58;ExcessHet=3.0103;FS=4.960;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-7.452;QD=0.96;ReadPosRankSum=-3.082;SOR=1.990;set=HC	GT:AD:AF:DP	0/1:51,6:0.11:57
chr19	9025542	.	T	G	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.550;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=7.412;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-8.032;QD=1.10;ReadPosRankSum=-2.391;SOR=2.356;set=HC	GT:AD:AF:DP	0/1:59,7:0.11:66
chr19	9025545	.	A	C	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.371;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=7.429;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-8.398;QD=0.93;ReadPosRankSum=-1.592;SOR=2.400;set=HC	GT:AD:AF:DP	0/1:65,7:0.10:72
chr19	9025546	.	G	C	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.147;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=7.475;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-8.458;QD=1.41;ReadPosRankSum=-1.492;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:66,7:0.10:73
chr19	9025549	.	A	G	90.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.887;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=9.785;MLEAC=1;MLEAF=0.500;MQ=59.58;MQRankSum=-8.747;QD=1.16;ReadPosRankSum=-1.466;SOR=2.690;set=HC	GT:AD:AF:DP	0/1:70,8:0.10:78
chr19	9025551	.	T	G	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.865;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=7.199;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-8.861;QD=1.51;ReadPosRankSum=-1.148;SOR=2.619;set=HC	GT:AD:AF:DP	0/1:72,8:0.10:80
chr19	9025556	.	G	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=9.845;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-9.139;QD=1.28;ReadPosRankSum=-1.141;SOR=2.917;set=HC	GT:AD:AF:DP	0/1:76,9:0.11:85
chr19	9025561	.	G	T	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.186;ClippingRankSum=0.000;DP=92;ExcessHet=3.0103;FS=12.557;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-9.462;QD=3.74;ReadPosRankSum=-0.467;SOR=3.154;set=HC	GT:AD:AF:DP	0/1:82,9:0.10:91
chr19	9025562	.	C	A	334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.617;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=12.747;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-9.568;QD=3.60;ReadPosRankSum=-0.280;SOR=3.292;set=HC	GT:AD:AF:DP	0/1:84,9:0.10:93
chr19	9025568	.	G	A	499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=5.612;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-11.028;QD=4.00;ReadPosRankSum=-3.710;SOR=0.305;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr19	9025584	rs77811999	T	G	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=9.865;MLEAC=1;MLEAF=0.500;MQ=58.47;MQRankSum=-11.423;QD=3.51;ReadPosRankSum=-3.333;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr19	9025604	rs200791776	A	G	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=8.843;MLEAC=1;MLEAF=0.500;MQ=58.60;MQRankSum=-10.735;QD=5.13;ReadPosRankSum=-3.301;SOR=0.389;set=HC	GT:AD:AF:DP	0/1:141,65:0.32:206
chr19	9025669	rs200046834	G	A	650.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.358;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=59.967;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-10.404;QD=3.24;ReadPosRankSum=-2.747;SOR=5.259;set=HC	GT:AD:AF:DP	0/1:171,30:0.15:201
chr19	9025671	.	G	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.379;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=64.002;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-9.774;QD=3.29;ReadPosRankSum=-2.087;SOR=6.407;set=HC	GT:AD:AF:DP	0/1:170,26:0.13:196
chr19	9025673	.	G	T	542.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.307;ClippingRankSum=0.000;DP=196;ExcessHet=3.0103;FS=60.687;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-10.011;QD=2.77;ReadPosRankSum=-1.971;SOR=6.310;set=HC	GT:AD:AF:DP	0/1:171,25:0.13:196
chr19	9025676	.	GGC	G	485.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.223;ClippingRankSum=0.000;DP=193;ExcessHet=3.0103;FS=60.671;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-9.923;QD=2.52;ReadPosRankSum=-2.578;SOR=6.282;set=HC	GT:AD:AF:DP	0/1:168,25:0.13:193
chr19	9025679	.	A	AAG	515.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=8.786;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=60.691;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-10.959;QD=2.76;ReadPosRankSum=-2.893;SOR=6.274;set=HC	GT:AD:AF:DP	0/1:162,25:0.13:187
chr19	9025682	.	G	A	398.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.125;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=51.068;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=-10.800;QD=2.17;ReadPosRankSum=-2.535;SOR=5.869;set=HC	GT:AD:AF:DP	0/1:163,21:0.11:184
chr19	9025686	.	A	G	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.070;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=42.096;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-10.397;QD=1.82;ReadPosRankSum=-2.941;SOR=5.476;set=HC	GT:AD:AF:DP	0/1:152,18:0.11:170
chr19	9025689	.	A	T	260.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.507;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=36.389;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-10.595;QD=1.53;ReadPosRankSum=-2.558;SOR=5.208;set=HC	GT:AD:AF:DP	0/1:154,16:0.09:170
chr19	9025691	.	G	A	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.167;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=30.249;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=-9.905;QD=1.05;ReadPosRankSum=-1.736;SOR=4.794;set=HC	GT:AD:AF:DP	0/1:153,13:0.08:166
chr19	9025826	rs7256118	T	A	849.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	9028242	rs199790313	T	C	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.668;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=7.304;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-12.637;QD=0.80;ReadPosRankSum=-2.875;SOR=1.108;set=HC	GT:AD:AF:DP	0/1:157,16:0.09:173
chr19	9028245	rs200670536	G	T	128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=7.282;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-13.075;QD=0.70;ReadPosRankSum=-3.070;SOR=1.107;set=HC	GT:AD:AF:DP	0/1:169,16:0.09:185
chr19	9028373	rs56396897	G	A	9659.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	9028432	rs10411029	C	T	6564.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	9048342	rs10854118	C	T	3199.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	9049726	rs11670328	G	A	3687.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	9056982	rs11670318	G	A	7070.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	9057408	rs1423051	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	9057687	rs1895364	A	G	4503.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	9057721	rs2216662	C	T	4114.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	9058907	rs1833777	G	C	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	9058942	rs1833778	C	T	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	9059808	rs7508222	A	G	4583.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	9060605	rs2194168	G	A	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	9060656	rs2216663	C	T	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	9060812	rs1820099	T	C	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	9062544	rs2547063	T	G	2974.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	9063678	rs2547064	T	G	7747.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	9063935	rs2252675	G	A	5327.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	9064271	rs117784188	C	G	6784.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	9064277	rs117968098	A	G	6796.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.85;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	9065632	rs1867691	T	C	4015.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	9070194	rs1344572	A	G	12209.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	9070225	rs1559172	G	C	10558.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	9070837	rs2547067	G	A	5138.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	9071763	rs10422567	T	A	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	9072313	rs2121133	A	G	2997.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	9072742	rs2591590	T	C	4089.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	9074950	rs2591591	G	T	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	9075217	rs2547068	T	A	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	9075346	rs2591592	T	A	2279.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	9075584	rs2547069	T	A	1939.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	9075635	rs2547070	G	A	1393.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	9075737	rs2547071	T	C	2210.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	9075969	rs2591593	C	T	2527.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	9076083	rs2547072	G	A	3442.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	9076163	rs2547073	C	T	4053.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	9076278	rs953551	G	A	9023.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	9076728	rs2591594	C	T	5886.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	9076858	rs2547074	C	T	2860.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	9076929	rs2547075	T	G	3192.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	9076950	rs2547076	C	A	3453.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	9076991	rs2591595	C	T	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	9077060	rs2591596	C	T	3718.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	9077264	rs1862461	T	G	5399.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	9077436	rs1862462	G	A	5068.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	9077803	rs2591597	T	C	2123.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:1,82:0.99:83
chr19	9077902	rs2547077	A	G	1546.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	9077984	rs2547078	T	C	351.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr19	9080337	.	G	GAAA	116.37	.	AC=2;AF=1.00;ALERT;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.63;QD=29.09;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	9080338	.	G	GAAA	116.37	.	AC=2;AF=1.00;ALERT;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.63;QD=29.09;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	9080341	rs3964319	G	A	123.56	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.79;QD=30.89;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	9080348	.	A	AAAGGGAGAG	114.52	.	AC=2;AF=1.00;AN=2;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.71;QD=28.63;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	9080462	rs2547065	C	G	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.895;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	9083124	rs12608495	G	A	4786.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	9087615	rs1596798	T	A	5662.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	9088661	rs117838005	A	G	3484.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr19	9212864	rs4804399	A	C	1379.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	9213132	rs12610094	A	G	7590.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:2,298:0.99:300
chr19	9213651	rs62621389	C	T	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	9225287	rs28716093	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.906;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	9225387	rs58243883	G	GA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.399;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.445;QD=1.59;ReadPosRankSum=-1.306;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr19	9225940	rs7246969	G	A	4773.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	9225973	rs7246980	G	A	4432.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	9226017	rs2217657	C	G	4594.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	9226540	rs36095111	A	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	9236698	rs111867493	G	GATGGT	1082.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	9236886	rs10424352	A	G	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=25.77;SOR=0.958;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	9236916	rs75266995	AG	A	8672.73	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	9237435	rs10407484	A	G	4652.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	9237542	rs10414255	T	C	4314.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	9237736	.	C	CT	605.73	.	AC=2;AF=1.00;AN=2;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.57;QD=37.86;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	9237739	.	C	CTTTTT	608.73	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.48;QD=38.05;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	9237746	.	T	TTC	623.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.95;QD=38.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	9296664	rs56246934	T	C	4923.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	9325116	rs5020278	G	A	9886.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	9325252	rs61729907	G	A	7106.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	9346319	rs34854496	CCTT	C	20019.73	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr19	9346427	rs1968136	T	C	10011.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	9346762	rs2015157	T	G	5577.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	9362343	rs2240927	C	T	11134.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	9362443	rs2240928	C	T	4801.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	9415942	.	TAC	T	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=142;ExcessHet=3.0103;FS=2.315;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=4.631;QD=1.81;ReadPosRankSum=-2.598;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:88,17:0.16:105
chr19	9435294	rs35401044	AC	A	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.630;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=7.384;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=0.705;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	9435320	rs368039177	GA	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.674;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=-0.815;SOR=1.429;set=HC	GT:AD:AF:DP	0/1:48,18:0.27:66
chr19	9461556	.	G	A	326.77	.	AC=1;AF=0.500;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	0/1:23,18:0.44:41
chr19	9582092	rs3068759	TAAAA	T	499.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;MQRankSum=0.436;QD=16.12;ReadPosRankSum=-0.100;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:3,28:0.90:31
chr19	9582164	rs5827059	G	GA	168.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	9646739	rs888872	C	G	793.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	9673271	rs147918159	CTCT	C	2895.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	9729934	.	A	AAAAT	1272.50	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:2,29:0.94:31
chr19	9771286	rs111723152	G	GA	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.038;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.923;QD=0.44;ReadPosRankSum=0.702;SOR=1.379;set=HC	GT:AD:AF:DP	0/1:105,23:0.18:128
chr19	9868686	rs79195449	T	A	9347.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	9958878	rs2010457	A	G	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	9964823	rs8111802	A	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	10071063	rs10406152	T	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	10071634	rs918542	T	C	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	10073744	rs35427045	C	A	1100.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	10083510	.	C	CAA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=0.682;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chr19	10097443	.	TA	T	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.834;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=3.039;QD=1.62;ReadPosRankSum=1.336;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:93,30:0.24:123
chr19	10108908	rs143525824	GCA	G	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=2.154;QD=2.01;ReadPosRankSum=-0.172;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:49,11:0.18:60
chr19	10112148	rs12980478	T	A	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	10112346	rs2287803	T	C	10132.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	10114252	rs61742765	C	G	5678.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	10114740	rs62104337	T	A	3751.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	10116076	rs11085529	G	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	10116375	rs2303099	G	T	9615.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	10116703	rs11085530	A	G	7481.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	10120887	rs8108121	C	G	3689.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:9,184:0.95:193
chr19	10129262	rs1644733	T	C	564.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	10131849	rs35664342	C	CT	710.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.130;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=5.713;MLEAC=2;MLEAF=1.000;MQ=64.34;MQRankSum=2.413;QD=20.90;ReadPosRankSum=0.170;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:5,29:0.85:34
chr19	10131866	rs2016307	A	T	2136.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=66.27;QD=33.92;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:1,62:0.98:63
chr19	10131999	rs1644731	T	C	8019.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	10132290	rs747574	C	T	17223.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr19	10149131	rs17210660	G	T	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	10149207	rs57198581	G	A	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	10149223	rs16997792	A	G	577.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	10160578	rs11085554	C	T	4417.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	10165844	rs60321046	G	A	9356.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.98;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	10165854	rs56717463	T	C	9687.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.25;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	10165932	rs8113341	A	G	7711.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr19	10166114	rs10426597	A	G	2424.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	10166233	rs10405132	C	T	17944.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.78;SOR=1.007;set=HC	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	10166243	rs10403535	G	T	20706.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.22;SOR=1.008;set=HC	GT:AD:AF:DP	1/1:0,448:1.00:448
chr19	10166253	rs10411594	T	C	21837.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.57;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	10169245	rs1993466	A	G	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	10169261	rs11667703	C	T	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	10169278	rs4552116	T	G	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:1,194:0.99:195
chr19	10169477	rs11667515	G	A	6248.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	10192425	rs112439574	G	GGAA	2485.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.401;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.200;MLEAC=2;MLEAF=1.000;MQ=61.86;MQRankSum=0.922;QD=37.10;ReadPosRankSum=0.455;SOR=0.542;set=HC	GT:AD:AF:DP	1/1:3,64:0.96:67
chr19	10218030	rs1551570	C	T	235.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	10218434	rs55752217	C	T	6557.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	10218524	rs2305791	C	G	4895.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	10221151	rs2305792	C	G	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	10222558	rs2010353	G	T	791.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	10224526	rs3745600	C	T	12313.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr19	10225777	rs7401	A	G	4964.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.896;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	10226052	rs2305795	G	A	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	10226256	rs7710	A	G	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=24.97;SOR=2.597;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	10226340	rs71188883	GTGCC	G	16147.73	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	10229240	rs61403454	CA	C	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.708;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.46;ReadPosRankSum=0.859;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:10,42:0.81:52
chr19	10229297	rs11667630	C	A	3426.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	10229521	rs2290687	C	T	6344.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.42;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	10229726	rs149991692	TGGCAGTCCTCACTCACCTCCC	T	5005.73	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	10251747	rs2290684	A	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	10265312	rs721186	T	C	7606.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	10334443	rs2116941	A	C	168.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	10363455	rs35087032	C	CT	2603.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	10370542	rs11115	C	T	8313.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	10394792	rs1799969	G	A	12167.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr19	10395683	rs5498	A	G	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	10402131	rs901886	T	C	7689.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	10402938	rs1056538	G	A	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	10403368	rs2228615	G	A	10636.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr19	10403947	rs2569702	T	C	4511.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr19	10404227	rs2569703	C	G	2611.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	10405906	rs34124276	C	CT	2247.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	10407169	rs710845	G	C	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	10416777	rs35251981	A	ATAT	330.73	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	10418838	rs35063123	G	A	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	10419468	rs55905227	C	T	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	10425986	rs368835	A	G	276.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	10425992	rs138235551	TGG	T	344.74	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=49.25;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	10425995	.	G	GTTTTT	309.75	.	AC=2;AF=1.00;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.72;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	10426024	rs1124765	T	G	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	10426422	rs378395	A	C	4993.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	10426628	rs395782	T	C	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	10428790	rs12459144	C	T	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	10429120	rs281427	T	C	1439.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	10431300	rs34942709	A	AG	2549.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	10432334	rs12983649	T	G	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:3,199:0.99:202
chr19	10444826	rs2278442	G	A	9808.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	10625067	rs6511701	A	C	8397.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	10659804	rs35786570	C	CT	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.950;QD=0.55;ReadPosRankSum=-0.580;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:68,15:0.18:83
chr19	10665691	rs10419405	T	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	10665912	rs6146467	C	CCCGCCCTGCCCGCAGCGCACCTGGCT	7892.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr19	10666112	rs12459941	G	A	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	10668452	rs3745255	A	G	11061.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr19	10669032	rs892084	T	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	10670184	rs3826709	C	G	8374.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	10671664	rs7259124	T	C	5593.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	10671841	.	C	G	2178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.416;ClippingRankSum=0.000;DP=514;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=-0.451;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:365,144:0.28:509
chr19	10679240	rs1968445	C	G	6135.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	10683602	rs2304163	C	T	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	10685509	rs2304162	G	A	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	10685859	rs1560712	G	C	3222.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	10687757	rs7252007	T	C	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	10689518	rs73018654	G	A	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	10689691	.	CT	C	222.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.817;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=10.61;ReadPosRankSum=0.422;SOR=0.527;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr19	10690557	rs10426276	G	C	2998.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	10692000	rs1045361	T	C	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	10692117	rs2304161	T	C	8267.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr19	10692129	rs2304160	G	A	8395.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr19	10694239	rs11085739	A	G	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.82;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	10694244	rs11085740	C	T	2094.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.866;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	10738639	rs3087969	C	T	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	10741622	rs12710257	A	G	1116.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	10741681	rs60016481	C	CA	1173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.671;QD=9.95;ReadPosRankSum=0.444;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:32,86:0.73:118
chr19	10741907	rs12972963	A	G	15481.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,601:1.00:601
chr19	10742170	rs2288904	A	G	4611.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	10742287	rs1560711	C	T	7088.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	10742443	rs1560710	C	T	9720.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	10742463	rs1560709	G	T	9602.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr19	10745764	rs2163832	T	C	7956.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	10748820	rs3859514	T	C	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr19	10751769	rs111569642	G	GA	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chr19	10752968	rs10405617	A	G	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	10793749	rs2738039	A	G	1196.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	10794630	rs2229383	G	T	10262.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	10794793	rs892087	C	T	1254.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	10818092	rs892085	G	A	8372.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr19	10824435	rs35323929	CT	C	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.63;ReadPosRankSum=0.423;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	10883126	rs3826803	C	G	3489.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	10912831	.	C	T	887.77	.	AC=2;AF=1.00;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	10970558	rs8100581	A	G	1503.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	11038843	rs892010	G	C	1470.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	11136304	rs186362541	T	C	2837.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	11151954	rs200002796	G	C	2820.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	11168896	rs8104480	A	G	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	11170839	rs7275	T	C	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	11221454	rs2738442	T	C	13584.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.85;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,506:1.00:506
chr19	11227814	.	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=4.652;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=-0.586;QD=1.85;ReadPosRankSum=-0.530;SOR=0.552;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	11257756	.	CA	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-0.113;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	11258584	.	CA	C	311.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DP=175;ExcessHet=3.0103;FS=7.329;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.144;QD=2.56;ReadPosRankSum=-0.736;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:68,54:0.44:122
chr19	11285390	rs440677	G	A	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	11288976	rs139114831	A	AG	577.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	11303422	rs12972022	G	A	5845.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	11303469	rs7254270	C	A	8609.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.327;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=6.026;MLEAC=2;MLEAF=1.000;MQ=59.96;MQRankSum=-0.112;QD=23.27;ReadPosRankSum=1.075;SOR=0.071;set=HC	GT:AD:AF:DP	1/1:3,367:0.99:370
chr19	11303554	rs17616661	A	G	11752.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr19	11303943	rs3745681	A	G	6398.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr19	11304404	rs755237	C	T	13837.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr19	11304498	rs755238	C	T	8915.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr19	11305161	rs754529	A	G	5243.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	11305245	rs754528	T	C	5725.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	11310920	rs8101345	C	T	531.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	11319236	rs12461903	T	C	2126.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	11319636	rs117328686	G	A	7840.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	11326629	rs10403991	C	A	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	11333787	rs3810309	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	11363146	rs8113582	A	T	3197.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	11406963	rs12461865	G	A	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	11408912	rs17001344	T	C	5633.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	11409684	rs422496	A	G	4853.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	11411868	rs420703	C	A	1705.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:2,66:0.97:68
chr19	11422777	rs192026480	T	C	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	11422998	rs56982210	TA	T	468.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=6.787;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=0.832;QD=11.16;ReadPosRankSum=-0.331;SOR=1.741;set=HC	GT:AD:AF:DP	1/1:7,35:0.83:42
chr19	11436302	rs56363898	A	AG	1975.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	11459665	rs78738753	G	GA	9914.73	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	11488725	rs142094773	G	A	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.61;SOR=1.196;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	11495343	.	T	TTC	1075.86	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.373;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.17;MQRankSum=0.565;QD=21.10;ReadPosRankSum=0.644;SOR=1.532;set=HC	GT:AD:AF:DP	1/1:6,45:0.88:51
chr19	11508177	rs2291516	G	A	7584.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	11517666	rs5827125	AT	A	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.650;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.64;ReadPosRankSum=-1.437;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,5:0.56:9
chr19	11526765	rs167479	G	T	1741.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	11534503	rs57892201	TG	T	1159.37	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:9,55:0.86:64
chr19	11541712	rs34094	T	C	8782.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr19	11547022	rs143936796	GTCC	G	9529.73	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	11558240	rs186375	T	C	16451.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	11558275	rs11557488	G	A	17919.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.46;QD=40.18;SOR=0.730;set=HC	GT:AD:AF:DP	1/1:0,446:1.00:446
chr19	11558340	.	AGAGGAG	A,AGAG	8078.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=302;set=Intersection	GT:AF:DP	1/2:0.10,0.90:210
chr19	11565284	rs35334288	TTC	T	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.548;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-0.110;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:31,6:0.16:37
chr19	11624491	rs4804168	C	G	2486.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	11708361	rs11551815	C	T	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	11708464	rs72997090	G	C	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	11725761	rs5827132	AT	A	210.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=59.61;MQRankSum=-0.303;QD=8.43;ReadPosRankSum=-1.480;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:5,20:0.80:25
chr19	11725823	rs1969533	A	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.06;QD=42.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	11725826	rs3923752	A	G	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.06;QD=42.41;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	11727384	rs4411616	G	C	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	11727503	rs4545929	T	C	1550.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	11728802	rs4804611	A	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	11891003	rs799193	G	A	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	11943697	rs400106	G	A	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=306;MQ=59.86;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	12024011	.	C	CA	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.12;ReadPosRankSum=-0.900;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	12058536	rs4804175	C	T	576.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	12088380	.	A	G	124.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.606;SOR=0.268;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	12157334	rs4804176	T	G	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	12187621	rs79709447	T	C	4760.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	12204632	rs199664949	G	GT	39.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.040;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:63,15:0.19:78
chr19	12222381	rs1866382	C	G	3273.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	12246403	rs181452303	G	A	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	12256358	rs12972621	T	G	13377.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:1,489:1.00:490
chr19	12502457	rs4804669	A	G	12150.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,468:1.00:468
chr19	12541532	rs10422063	C	A	21111.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr19	12541547	rs10402252	T	G	20657.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:0,476:1.00:476
chr19	12542772	rs1134389	C	T	4967.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	12542848	rs4804692	G	C	1489.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=43.82;SOR=7.112;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	12542851	rs4804693	AT	GC	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=44.14;SOR=7.054;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	12542891	rs140908232	G	A	486.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=32.45;SOR=3.126;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	12542904	rs78266625	C	T	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.31;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	12543333	rs3979432	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	12551616	rs35084134	C	G	3646.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	12551715	rs11881297	A	C	15409.77	.	AC=2;AF=1.00;AN=2;DB;DP=586;set=Intersection	GT:AD:AF:DP	1/1:0,584:1.00:584
chr19	12574740	rs60000717	CAAA	C	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=0.926;SOR=0.910;set=HC	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	12576049	rs7259240	G	A	6690.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	12576573	rs10404972	G	A	841.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	12576612	.	TATTG	T	669.73	.	AC=2;AF=1.00;AN=2;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.60;QD=41.86;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	12662318	rs79749579	G	GC	7469.73	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:1,234:1.00:235
chr19	12720024	rs74777066	G	A	2117.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	12787002	rs34820996	G	GAGAC	2230.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	12810279	rs9467	A	T	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.22;ReadPosRankSum=2.450;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,4:0.50:8
chr19	12876278	rs1205169	C	A	5502.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;MQ=59.93;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	12876964	rs897804	G	C	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	12908142	.	C	CTTT	126.92	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=15.87;ReadPosRankSum=-0.319;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,6:0.75:8
chr19	12911285	rs10427027	T	C	565.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	12917761	rs55668927	A	T	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	12936617	rs13628	C	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	12939792	rs1466306	T	C	2025.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	12939858	rs10423639	AA	CC	1276.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	12958360	rs2290689	T	C	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	12958697	rs2290688	T	C	5493.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	12962648	rs7250751	A	G	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	12963143	rs1078264	T	C	4766.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	12963285	rs2077544	C	T	840.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	12975599	rs2242512	G	A	2521.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	12976481	rs150724539	AAAC	A	7207.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr19	12978917	.	A	ATTTTTTTTTTT	150	.	AC=2;AF=1.00;AN=2;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.50;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	12981477	.	C	CAA	658.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.461;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=4.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=-1.442;SOR=2.925;set=HC	GT:AD:AF:DP	0/1:8,35:0.81:43
chr19	12985576	rs11085822	A	G	13734.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr19	12989560	rs2293682	G	A	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	12996740	rs2072597	A	G	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	13029188	rs2965214	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	13030939	.	AT	ACACACACACACACACT,A	1149.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DP=19;set=Intersection	GT:AF:DP	1/1:1.00:19
chr19	13030940	rs8104603	T	A	1158.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=38.63;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	13031210	rs2967897	T	C	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	13039284	rs2293683	A	G	7062.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	13044544	rs2974750	C	A	1608.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=18.899;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.08;ReadPosRankSum=-1.108;SOR=1.500;set=HC	GT:AD:AF:DP	1/1:4,85:0.96:89
chr19	13068122	.	C	G	161.80	.	AC=2;AF=1.00;AN=2;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	13249260	rs141874584	AAC	A	2619.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	13260225	rs142737763	CA	C	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=9.167;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.938;QD=3.88;ReadPosRankSum=0.861;SOR=1.991;set=HC	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	13260256	rs61378403	G	A	1341.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.166;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.555;QD=17.89;ReadPosRankSum=2.228;SOR=0.616;set=HC	GT:AD:AF:DP	1/1:9,66:0.88:75
chr19	13318994	rs376408077	GGGAGGAGGA	G	220.79	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=36.80;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	13319693	rs16051	A	G	5653.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.083;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=11.620;MLEAC=2;MLEAF=1.000;MQ=59.90;MQRankSum=-0.176;QD=23.76;ReadPosRankSum=2.861;SOR=3.143;set=HC	GT:AD:AF:DP	1/1:9,229:0.96:238
chr19	13319989	rs10413221	T	C	2259.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	13320002	rs2304093	C	G	2347.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	13322822	rs3217380	AG	A	1175.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	13323124	rs16048	T	G	3867.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:2,141:0.99:143
chr19	13323606	rs72995963	G	A	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	13323641	rs140435495	T	TAC	238.74	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	13338180	rs143245670	AAAG	A	1835.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.439;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.44;MQRankSum=-2.944;QD=15.55;ReadPosRankSum=-0.958;SOR=0.638;set=HC	GT:AD:AF:DP	1/1:12,106:0.90:118
chr19	13339405	rs34941295	TAG	T	336.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=5.102;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.31;ReadPosRankSum=1.076;SOR=2.235;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	13339438	.	A	G	282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.783;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-0.460;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:27,15:0.36:42
chr19	13341037	rs16042	G	A	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	13345657	rs3765012	C	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	13355900	rs16039	T	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	13356150	rs16035	T	G	5221.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	13373477	rs16031	A	G	649.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	13409390	rs16025	C	T	10289.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr19	13409472	rs16023	T	A	6337.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr19	13409696	rs16022	C	G	2663.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	13410235	rs12985136	G	T	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	13411482	rs16018	G	A	2597.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	13423688	rs10407951	A	T	251.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	13440982	rs3764665	C	T	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	13443770	rs16008	T	C	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	13445144	rs2306348	C	T	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	13445208	rs2248069	C	T	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.93;SOR=0.831;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	13445375	rs2306347	T	G	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.14;QD=24.64;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	13445407	rs138143360	TTGTG	T	269.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.79;QD=38.54;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	13616693	rs16003	C	T	2707.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.84;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	13865070	rs378189	C	T	2991.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	13866793	rs392725	A	G	1026.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	13866866	rs417186	T	G	3205.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	13866957	rs2910225	T	C	10422.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	13868117	rs693151	A	G	1071.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	13868669	rs6511886	G	A	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	13870153	rs371671	C	A	906.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	13875258	.	C	G	157	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=1;HapScore=2;MGOF=8;MMLQ=23;MQ=60.0;NF=9;NR=2;PP=157;QD=17.4337465952;SC=TGGAATCCGCCTCCTGGGAAC;SbPval=0.56;Source=Platypus;TC=12;TCF=10;TCR=2;TR=11;WE=13875266;WS=13875256;set=Platypus	GT:AD:AF:DP	1/1:1,11:0.92:12
chr19	13875539	.	AGCGGGGCGGCGGGGCGGCGGGGCGGCGGGGCGGCGGGGCG	A	984	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=1;HapScore=1;MGOF=7;MMLQ=22;MQ=57.24;NF=1;NR=0;PP=984;QD=994.0;SC=ATGAAGGTGCAGCGGGGCGGC;SbPval=0.34;Source=Platypus;TC=9;TCF=3;TCR=6;TR=1;WE=13875586;WS=13875529;set=Platypus	GT:AD:AF:DP	1/1:8,1:0.11:9
chr19	13875626	rs2922288	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	13899041	.	CTTTTTT	C,CT	1619.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.50;MQRankSum=0.545;QD=32.39;ReadPosRankSum=-0.542;SOR=1.432;set=HC	GT:AD:AF:DP	1/2:2,36,12:0.72,0.24:50
chr19	13899980	rs4926171	A	T	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	13988040	rs897790	C	T	5836.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	13988416	rs2016163	A	G	12472.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr19	13993457	rs2242130	C	T	499.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	13996587	rs3803894	G	A	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	13996647	rs3803893	T	C	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	14000170	rs3803892	T	C	7117.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:1,265:1.00:266
chr19	14000400	rs3803891	A	G	9649.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr19	14000870	rs2305775	C	T	11077.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr19	14003896	rs11085875	C	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	14015711	rs6511898	C	A	5373.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.944;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	14015815	rs6511899	T	C	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	14020573	rs12971500	T	C	7379.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr19	14023495	rs8111764	T	C	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	14029269	rs2305776	A	C	7503.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr19	14030689	rs10410239	T	C	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	14037768	rs750580	C	T	16457.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr19	14038102	rs10405523	G	A	3830.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	14049143	rs79805695	G	C	6008.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:2,241:0.99:243
chr19	14049191	rs74933767	G	A	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	14065534	rs1056142	A	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	14070706	rs141180609	A	AGGTGGGCCCAGGGCGGGCAG	5477.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.668;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=9.546;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=62.25;ReadPosRankSum=0.658;SOR=5.622;set=HC	GT:AD:AF:DP	1/1:2,86:0.98:88
chr19	14091543	rs146048336	T	TGCATCCTCTCTGGGGTGGGCTC	5054.73	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	14104251	rs12459114	G	A	612.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	14139004	rs1982632	A	G	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	14200896	.	C	CG	111	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=1;HapScore=2;MGOF=1;MMLQ=22;MQ=60.53;NF=3;NR=0;PP=111;QD=44.0;SC=TGTGGCGGCGCCGGCGGGGCC;SbPval=1.0;Source=Platypus;TC=4;TCF=4;TCR=0;TR=3;WE=14200904;WS=14200886;set=Platypus	GT:AD:AF:DP	1/1:1,3:0.75:4
chr19	14294288	rs61051191	GC	G	4070.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:2,138:0.99:140
chr19	14492265	rs2302997	T	C	10239.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.83;QD=45.11;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	14492272	rs2302996	T	C	10561.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.97;QD=43.64;SOR=1.123;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	14499357	rs2302094	T	A	1319.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	14499410	rs2302092	G	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	14508223	rs10412108	A	G	2273.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	14508964	rs7508244	T	C	7026.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr19	14561722	rs8107892	A	G	2006.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	14627050	rs4926222	G	A	3080.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	14655812	rs73002853	T	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	14655865	rs7252966	T	C	4031.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	14674235	rs891089	C	T	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	14682804	rs9543	G	C	1520.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	14719854	rs10404194	T	C	2612.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	14720026	rs11085899	C	T	2349.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	14721019	rs6511944	C	T	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	14743902	rs2045912	C	T	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	14744181	rs899217	T	A	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.18;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr19	14752325	rs8102646	C	T	8134.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	14754831	rs71166776	GT	G	232.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=12.93;ReadPosRankSum=0.253;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chr19	14769339	rs4606855	C	G	1958.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.48;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	14779550	rs4239642	C	A	384.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	14804183	rs10407394	A	G	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	14805719	rs3850141	T	C	2242.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	14806017	rs3813144	G	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	14817062	rs4808319	G	A	2728.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	14817145	rs4809215	G	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	14817548	rs6511961	T	A	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	14819310	rs34925577	C	CAG	2526.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	14826849	rs4078586	T	C	3703.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	14827076	.	C	CT	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.613;ClippingRankSum=0.000;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=2.025;QD=0.37;ReadPosRankSum=2.045;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:147,30:0.17:177
chr19	14829749	rs3764626	C	T	5731.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	14846897	rs1859257	T	A	8405.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr19	14857179	rs1029476	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	14857187	.	C	CT	1012.73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=32.67;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	14857891	rs10403842	A	G	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	14862430	rs2524383	C	G	12877.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr19	14862517	rs3752189	A	G	6801.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	14866698	rs28420691	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	14866974	rs2253472	T	C	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;MQ=60.05;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	14867186	rs2524386	G	A	3030.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	14875201	rs7253782	G	T	2329.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	14884946	rs2302090	A	G	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	14910438	rs10415312	C	T	9628.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,358:1.00:358
chr19	14910573	rs10415562	C	T	5901.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	14992178	rs60445901	C	CTATT	1440.73	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr19	15052983	rs3044711	T	TATC	13230.73	.	AC=2;AF=1.00;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	15131213	rs7248834	G	T	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	15132545	rs736737	T	C	5175.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	15132574	rs757463	C	G	5368.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	15133762	rs8111625	G	C	13441.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.328;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.41;ReadPosRankSum=-1.139;SOR=0.290;set=HC	GT:AD:AF:DP	1/1:1,508:1.00:509
chr19	15198263	rs8105277	A	G	15222.77	.	AC=2;AF=1.00;AN=2;DB;DP=583;set=Intersection	GT:AD:AF:DP	1/1:0,579:1.00:579
chr19	15198292	rs8104843	C	G	15879.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr19	15198507	rs8108721	T	C	10185.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	15198631	rs8105737	A	C	6215.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	15198764	rs12975625	T	C	6023.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	15223466	rs4808977	A	G	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	15224225	rs8109071	G	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	15224265	rs8109089	G	C	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	15226611	rs2074261	C	A	8973.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr19	15226970	rs2074262	G	A	12812.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	15227030	rs2074263	G	A	17197.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr19	15227798	rs12972958	G	C	5600.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	15233581	rs2074265	C	A	6957.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:242,323:0.57:565
chr19	15233631	rs2074266	G	A	9159.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:318,432:0.58:750
chr19	15235913	.	C	A	553.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.765;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=3.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.19;ReadPosRankSum=-0.478;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:45,32:0.42:77
chr19	15235932	rs4141356	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:24,37:0.61:61
chr19	15271771	rs1044009	G	A	1489.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:127,79:0.38:206
chr19	15273221	rs757472	T	C	2899.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=1.473;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	15273231	rs4809028	A	G	2887.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.574;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	15273248	rs4809029	A	C	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	15273381	rs4809030	A	G	5885.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	15276007	rs2886698	C	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:48,36:0.43:84
chr19	15276055	rs2074617	C	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr19	15276143	rs2074618	C	T	15123.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr19	15276919	rs2074619	G	A	16171.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.47;SOR=1.509;set=HC	GT:AD:AF:DP	1/1:0,372:1.00:372
chr19	15276923	rs10416777	C	T	15891.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.93;SOR=1.489;set=HC	GT:AD:AF:DP	1/1:0,346:1.00:346
chr19	15277006	rs45591935	T	C	2907.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.40;SOR=2.973;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	15277009	rs62113791	CA	TG	2874.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.37;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	15277938	rs1548554	C	T	6245.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	15278057	rs1548555	A	G	15331.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,567:1.00:567
chr19	15281386	rs2074620	C	A	3687.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:302,188:0.38:490
chr19	15285052	rs1044006	T	C	5891.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	15285272	rs10422818	T	C	9706.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr19	15285382	rs71168591	ATTTT	A	2041.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.25;QD=37.12;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:1,54:0.98:55
chr19	15292088	rs7257550	G	C	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:8,19:0.70:27
chr19	15292366	rs11669982	C	T	1655.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:48,67:0.58:115
chr19	15292437	rs1043997	T	C	3993.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:143,191:0.57:334
chr19	15294991	rs2074616	C	T	1400.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:63,65:0.51:128
chr19	15300069	rs10423702	T	C	14349.77	.	AC=1;AF=0.500;AN=2;DB;DP=1249;set=Intersection	GT:AD:AF:DP	0/1:553,693:0.56:1246
chr19	15302844	rs1043994	T	C	7842.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:268,365:0.58:633
chr19	15303225	rs3815188	G	A	6673.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:204,314:0.61:518
chr19	15471856	rs4809184	T	C	15470.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr19	15485350	rs4809185	C	T	21131.77	.	AC=2;AF=1.00;AN=2;DB;DP=787;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr19	15508130	rs7247749	G	A	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.803;set=HC	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	15508362	rs2058322	G	C	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	15511205	.	CT	C	107.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331;ClippingRankSum=0.000;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=3.282;QD=0.55;ReadPosRankSum=-0.358;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:156,40:0.20:196
chr19	15539439	rs887898	A	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	15540830	rs141499743	C	T	4707.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:172,220:0.56:392
chr19	15549255	rs1005953	C	T	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chr19	15549939	rs929613	C	T	5366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=750;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=2.589;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:399,280:0.41:679
chr19	15563386	rs370634744	TG	T	581.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.273;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.887;QD=10.39;ReadPosRankSum=-0.046;SOR=1.067;set=HC	GT:AD:AF:DP	0/1:20,36:0.64:56
chr19	15569592	rs4809193	C	G	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,19:0.39:49
chr19	15569596	rs34234014	A	AC	328.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr19	15570931	rs3764566	G	A	2174.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:113,106:0.48:219
chr19	15574858	rs78677793	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.29;ReadPosRankSum=0.471;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:73,49:0.40:122
chr19	15575173	rs371577799	TG	T	279.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.385;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.411;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.132;QD=7.17;ReadPosRankSum=-0.705;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:21,18:0.46:39
chr19	15586672	rs892145	A	T	6544.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:195,300:0.61:495
chr19	15587185	rs733731	C	T	11437.77	.	AC=1;AF=0.500;AN=2;DB;DP=988;set=Intersection	GT:AD:AF:DP	0/1:442,544:0.55:986
chr19	15587345	rs3813135	T	C	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:91,124:0.58:215
chr19	15648108	.	T	TA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=0.621;SOR=1.127;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr19	15648148	rs4310987	C	T	2229.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	15648715	rs11666601	G	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr19	15651539	rs201608860	GCC	G	3705.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.403;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=8.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=-0.046;SOR=1.460;set=HC	GT:AD:AF:DP	0/1:91,96:0.51:187
chr19	15651548	rs372183725	AAT	A	3681.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=3.366;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=6.001;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.57;ReadPosRankSum=-0.140;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:86,93:0.52:179
chr19	15651551	rs372614865	T	G	3572.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=9.798;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=6.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.19;ReadPosRankSum=0.164;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:85,92:0.52:177
chr19	15651553	rs62113202	C	G	3578.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=3.686;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.93;ReadPosRankSum=-0.162;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:81,90:0.53:171
chr19	15651556	.	G	GAGC	3539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.678;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=5.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.32;ReadPosRankSum=-0.627;SOR=1.186;set=HC	GT:AD:AF:DP	0/1:77,89:0.54:166
chr19	15651560	rs62113205	C	G	3311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.989;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.795;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.93;ReadPosRankSum=-1.347;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:70,81:0.54:151
chr19	15651562	rs139932061	CG	C	3152.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:69,78:0.53:147
chr19	15651564	rs60465772	A	T	3039.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-4.112;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.11;ReadPosRankSum=-1.474;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:66,78:0.54:144
chr19	15651568	rs55832992	C	A	2880.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.283;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.34;ReadPosRankSum=-0.352;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:66,69:0.51:135
chr19	15654703	rs139862685	G	A	732.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:16,33:0.67:49
chr19	15658803	.	AGAGGGAGAGAGTGTGTGTGT	A	931.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0.000;DP=235;ExcessHet=3.0103;FS=1.088;MLEAC=1;MLEAF=0.500;MQ=61.94;MQRankSum=0.367;QD=6.56;ReadPosRankSum=1.894;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:85,57:0.40:142
chr19	15730498	rs55848814	G	GC	13818.73	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	15739084	rs4239613	T	C	3373.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:231,155:0.40:386
chr19	15739274	rs2056820	C	T	11066.77	.	AC=1;AF=0.500;AN=2;DB;DP=1261;set=Intersection	GT:AD:AF:DP	0/1:710,549:0.44:1259
chr19	15739315	rs2056821	T	C	10515.77	.	AC=1;AF=0.500;AN=2;DB;DP=1234;set=Intersection	GT:AD:AF:DP	0/1:717,516:0.42:1233
chr19	15739597	rs2056822	A	C	8762.77	.	AC=1;AF=0.500;AN=2;DB;DP=1159;set=Intersection	GT:AD:AF:DP	0/1:677,477:0.41:1154
chr19	15739992	rs2239366	T	C	1167.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:92,53:0.37:145
chr19	15740220	rs4239614	C	T	7917.77	.	AC=1;AF=0.500;AN=2;DB;DP=934;set=Intersection	GT:AD:AF:DP	0/1:525,407:0.44:932
chr19	15740268	rs2239367	C	G	6171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.002;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=1.191;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.35;ReadPosRankSum=-1.178;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:230,172:0.43:402
chr19	15740275	rs2283605	G	A	6050.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=3.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.58;ReadPosRankSum=-1.296;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:209,156:0.43:365
chr19	15769992	rs2460817	A	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chr19	15770018	rs68106141	T	C	1919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=1.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.74;ReadPosRankSum=-0.377;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:71,51:0.42:122
chr19	15770018	.	TCC	CCT	1258	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=5;HapScore=1;MGOF=5;MMLQ=25;MQ=60.0;NF=31;NR=9;PP=1258;QD=32.7866968716;SC=AGTTTCCACCTCCCTCCCCAA;SbPval=0.75;Source=Platypus;TC=106;TCF=77;TCR=29;TR=40;WE=15770028;WS=15770008;set=Platypus	GT:AD:AF:DP	1/0:66,40:0.38:106
chr19	15770020	rs2460819	C	T	1919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.551;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.61;ReadPosRankSum=-0.355;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:71,52:0.42:123
chr19	15784061	rs7254013	C	A	5444.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:173,252:0.59:425
chr19	15784116	rs7253210	G	A	5493.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:179,255:0.59:434
chr19	15784167	rs7254627	A	G	3689.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:126,164:0.57:290
chr19	15784195	rs10414690	G	C	4902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=235;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.04;ReadPosRankSum=2.456;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:107,126:0.54:233
chr19	15784200	rs55794585	C	T	4889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.488;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.54;ReadPosRankSum=2.253;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:104,123:0.54:227
chr19	15784214	rs56398124	C	T	4248.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:84,108:0.56:192
chr19	15784285	rs56205003	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:73,65:0.47:138
chr19	15784319	rs56124328	G	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:76,83:0.52:159
chr19	15784377	rs16995376	C	T	8911.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.172;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=1.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=22.11;ReadPosRankSum=0.216;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:178,225:0.56:403
chr19	15784386	rs16995378	C	T	5221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;ClippingRankSum=0.000;DB;DP=454;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.63;ReadPosRankSum=2.074;SOR=0.861;set=HC	GT:AD:AF:DP	0/1:209,240:0.53:449
chr19	15784617	.	A	G	2257	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=1;MGOF=17;MMLQ=27;MQ=59.98;NF=39;NR=95;PP=2257;QD=17.1027702429;SC=TCAGTGAGCTAGGTATTGATG;SbPval=0.45;Source=Platypus;TC=228;TCF=64;TCR=164;TR=134;WE=15784625;WS=15784607;set=Platypus	GT:AD:AF:DP	0/1:94,134:0.59:228
chr19	15784660	.	A	G	1382	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=1;MGOF=38;MMLQ=28;MQ=59.73;NF=15;NR=58;PP=1382;QD=19.4078248294;SC=GAGAAGCAAGAGAGATGGCTC;SbPval=0.3;Source=Platypus;TC=116;TCF=20;TCR=96;TR=73;WE=15784668;WS=15784650;set=Platypus	GT:AD:AF:DP	0/1:43,73:0.63:116
chr19	15789034	rs28416595	C	A	5018.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:194,240:0.55:434
chr19	15789098	rs609636	A	G	6607.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:233,303:0.57:536
chr19	15789140	rs609290	A	G	5244.77	.	AC=1;AF=0.500;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	0/1:207,243:0.54:450
chr19	15791180	rs8100667	C	T	8627.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:293,395:0.57:688
chr19	15793062	rs7253816	G	A	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.138;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.98;MQRankSum=4.148;QD=15.10;ReadPosRankSum=0.875;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:56,39:0.41:95
chr19	15793068	rs7254785	C	T	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.20;MQRankSum=3.981;QD=14.21;ReadPosRankSum=1.314;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:64,42:0.40:106
chr19	15793069	rs10415700	G	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:43,65:0.60:108
chr19	15793235	rs2285888	T	C	8830.77	.	AC=1;AF=0.500;AN=2;DB;DP=790;set=Intersection	GT:AD:AF:DP	0/1:361,427:0.54:788
chr19	15795842	rs2018030	C	T	3628.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:64,156:0.71:220
chr19	15806703	rs695149	A	C	6396.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:158,271:0.63:429
chr19	15807062	rs687774	C	T	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:106,146:0.58:252
chr19	15807157	rs688231	A	G	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=398;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:227,169:0.43:396
chr19	15807175	rs688256	G	C	7124.77	.	AC=1;AF=0.500;AN=2;DB;DP=461;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:250,209:0.46:459
chr19	15807212	rs596252	T	G	4646.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:247,239:0.49:486
chr19	15807305	rs688755	T	C	3107.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:107,135:0.56:242
chr19	15807830	rs593421	T	C	5740.77	.	AC=1;AF=0.500;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	0/1:243,274:0.53:517
chr19	15807884	rs593818	A	G	7468.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:301,359:0.54:660
chr19	15807984	rs594255	G	A	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:102,109:0.52:211
chr19	15838972	rs4569397	T	A	10675.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:359,483:0.57:842
chr19	15839081	rs2067083	C	T	10191.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:352,474:0.57:826
chr19	15839910	rs10426009	G	A	1058.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr19	15852223	rs1966357	A	C	5269.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:151,230:0.60:381
chr19	15852363	rs11670007	G	A	13528.77	.	AC=1;AF=0.500;AN=2;DB;DP=1114;set=Intersection	GT:AD:AF:DP	0/1:474,636:0.57:1110
chr19	15852544	rs11670326	C	T	8769.77	.	AC=1;AF=0.500;AN=2;DB;DP=756;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:351,402:0.53:753
chr19	15853150	rs16980824	C	T	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:133,146:0.52:279
chr19	15881751	rs8112713	A	C	8829.77	.	AC=1;AF=0.500;AN=2;DB;DP=754;set=Intersection	GT:AD:AF:DP	0/1:343,408:0.54:751
chr19	15881953	rs4807986	A	G	7684.77	.	AC=1;AF=0.500;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	0/1:255,341:0.57:596
chr19	15884810	rs10421246	A	T	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:128,167:0.57:295
chr19	15890388	rs7259595	A	G	1081.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr19	15890517	rs11669449	A	C	6954.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:249,320:0.56:569
chr19	15890625	rs11673423	C	G	8844.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:270,421:0.61:691
chr19	15890771	rs56317414	T	G	2244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.94;ReadPosRankSum=2.375;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:32,58:0.64:90
chr19	15890777	rs55926517	G	T	2198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.15;ReadPosRankSum=1.938;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:28,53:0.65:81
chr19	15890800	rs56180406	A	G	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr19	15905941	rs56117700	T	C	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.508;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.47;MQRankSum=-1.334;QD=13.34;ReadPosRankSum=0.689;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:29,32:0.52:61
chr19	15918455	rs61739573	G	A	8305.77	.	AC=1;AF=0.500;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	0/1:254,370:0.59:624
chr19	15932941	rs3761012	A	G	2725.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:137,129:0.48:266
chr19	15933059	rs3761013	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:68,69:0.50:137
chr19	15933155	rs367984219	A	AT	401.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.421;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.57;ReadPosRankSum=1.245;SOR=0.370;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	15934599	rs2285881	C	G	4268.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:208,217:0.51:425
chr19	15934656	rs10411865	A	G	4101.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:151,196:0.56:347
chr19	15989405	rs1126433	C	T	433.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.77;QD=28.92;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	15990048	rs3093198	A	G	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	15996820	rs2074900	G	A	2098.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:110,97:0.47:207
chr19	15997136	rs3093159	A	AC	2640.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-1.826;QD=7.98;ReadPosRankSum=0.662;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:197,134:0.40:331
chr19	16024538	rs1060467	A	G	3057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.950;ClippingRankSum=0.000;DB;DP=499;ExcessHet=3.0103;FS=16.815;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=-2.484;SOR=1.791;set=HC	GT:AD:AF:DP	0/1:303,195:0.39:498
chr19	16024662	rs1064796	G	C	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:218,182:0.46:400
chr19	16025176	rs1060463	C	T	2049.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:147,107:0.42:254
chr19	16025312	rs12985248	T	G	2018.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:139,97:0.41:236
chr19	16033379	rs4808409	G	T	1768.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:139,88:0.39:227
chr19	16034519	rs3746152	T	A	4289.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:121,184:0.60:305
chr19	16034714	rs8104361	A	G	25506.77	.	AC=2;AF=1.00;AN=2;DB;DP=953;set=Intersection	GT:AD:AF:DP	1/1:0,951:1.00:951
chr19	16035517	rs3746156	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:73,51:0.41:124
chr19	16038334	rs2219358	G	A	3628.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:247,171:0.41:418
chr19	16038390	rs2305803	G	T	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:75,54:0.42:129
chr19	16040292	rs3765070	A	G	2341.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:100,112:0.53:212
chr19	16040473	rs4808414	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:85,62:0.42:147
chr19	16045141	rs2305801	T	C	22835.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:0,842:1.00:842
chr19	16059846	rs117192411	C	G	8330.77	.	AC=1;AF=0.500;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	0/1:220,353:0.62:573
chr19	16060827	rs1594685	T	G	4131.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	16145560	rs73004880	T	C	7215.77	.	AC=1;AF=0.500;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	0/1:236,331:0.58:567
chr19	16186772	rs7260235	G	A	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	16186813	.	AC	A	67.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.255;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.90;ReadPosRankSum=-0.365;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:63,12:0.16:75
chr19	16186815	rs10633690	C	CCA	1178.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:43,32:0.43:75
chr19	16192898	rs3826722	A	G	2847.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.44;ReadPosRankSum=-1.138;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:95,134:0.59:229
chr19	16192958	rs3786577	A	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:57,81:0.59:138
chr19	16197377	rs2303150	C	T	1988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=3.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=0.484;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:73,97:0.57:170
chr19	16197421	rs2303149	A	G	2920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.427;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.01;ReadPosRankSum=1.229;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:70,76:0.52:146
chr19	16197423	rs11666144	C	T	2917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.620;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.40;ReadPosRankSum=1.006;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:68,75:0.52:143
chr19	16197432	rs11666147	C	T	2634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.246;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=20.42;ReadPosRankSum=0.275;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:62,67:0.52:129
chr19	16228970	rs2233145	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:200,117:0.37:317
chr19	16229236	rs1862603	A	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,47:0.65:72
chr19	16236557	rs10416989	G	A	5061.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	16238279	rs1043308	C	T	5634.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=1.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=0.994;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:238,281:0.54:519
chr19	16254422	rs4321304	T	C	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	16254694	rs2446366	A	G	4344.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.15;SOR=1.281;set=HC	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	16259460	rs285290	C	T	4741.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr19	16263227	rs377547783	CA	C	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.790;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.54;ReadPosRankSum=-1.107;SOR=1.267;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr19	16265494	rs111524	G	A	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	16268207	rs5827321	TA	T	24153.73	.	AC=2;AF=1.00;AN=2;DB;DP=1054;set=Intersection	GT:AD:AF:DP	1/1:2,994:1.00:996
chr19	16275515	rs6512086	A	G	10129.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	16283852	.	TACACACACACACAC	T	1637.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DP=122;ExcessHet=3.0103;FS=2.554;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.479;QD=16.54;ReadPosRankSum=0.154;SOR=1.122;set=HC	GT:AD:AF:DP	0/1:52,47:0.47:99
chr19	16308786	.	T	TCGCTGCCGCCGCCACCGCCCTCGGC	5157.73	.	AC=2;AF=1.00;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	16318781	rs2290657	C	T	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	16321047	rs7258138	T	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	16321073	rs68150030	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	16337423	rs2305939	T	C	13366.77	.	AC=2;AF=1.00;AN=2;DB;DP=493;set=Intersection	GT:AD:AF:DP	1/1:0,491:1.00:491
chr19	16338274	rs2305938	C	T	8415.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr19	16338532	rs2124904	G	A	11101.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr19	16344513	rs112921428	G	T	2975.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:148,140:0.49:288
chr19	16344528	rs2279060	C	G	6067.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	16345099	rs897774	T	C	8701.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	16435717	rs8106384	T	C	18564.77	.	AC=2;AF=1.00;AN=2;DB;DP=721;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,720:1.00:720
chr19	16436262	rs3745318	T	C	4978.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	16514771	rs873636	A	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:108,90:0.45:198
chr19	16539347	rs71178694	G	GAAGA	2080.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.581;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.205;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.38;ReadPosRankSum=1.692;SOR=1.012;set=HC	GT:AD:AF:DP	0/1:39,50:0.56:89
chr19	16539354	rs374317214	GACAGA	G	1654.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.285;QD=13.79;ReadPosRankSum=-0.916;SOR=0.900;set=HC	GT:AD:AF:DP	0/1:74,46:0.38:120
chr19	16539366	rs368177133	AG	A	1781.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=3.037;QD=13.60;ReadPosRankSum=-1.719;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:78,53:0.40:131
chr19	16582785	rs7252649	G	T	490.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr19	16591464	rs9305079	G	A	3892.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:180,192:0.52:372
chr19	16593189	rs138347151	CAACAA	C	2520.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:40,64:0.62:104
chr19	16593203	rs75847259	A	G	2814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.016;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=1.930;QD=21.82;ReadPosRankSum=-2.116;SOR=0.637;set=HC	GT:AD:AF:DP	0/1:48,81:0.63:129
chr19	16593415	rs8100755	G	A	3543.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:151,157:0.51:308
chr19	16594967	rs10413787	A	G	776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=5.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.85;ReadPosRankSum=-0.140;SOR=1.850;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chr19	16594979	rs7252242	C	T	665.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.185;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=8.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.64;ReadPosRankSum=-0.850;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr19	16596142	.	C	CT	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=6.411;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.69;ReadPosRankSum=2.098;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:60,14:0.19:74
chr19	16601154	rs3810196	T	C	3516.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:137,156:0.53:293
chr19	16601194	rs3810198	C	T	6191.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:264,293:0.53:557
chr19	16601411	rs79268770	A	T	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:294,188:0.39:482
chr19	16606742	rs3810199	G	C	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:96,127:0.57:223
chr19	16606766	rs3810200	G	C	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:85,101:0.54:186
chr19	16612368	rs201607227	AT	A	45.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=4.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.30;ReadPosRankSum=-1.271;SOR=0.294;set=HC	GT:AD:AF:DP	0/1:123,29:0.19:152
chr19	16613797	.	C	CA	560.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.526;ClippingRankSum=0.000;DP=234;ExcessHet=3.0103;FS=0.721;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.663;QD=2.57;ReadPosRankSum=-0.427;SOR=0.597;set=HC	GT:AD:AF:DP	0/1:156,62:0.28:218
chr19	16620450	rs147614229	C	T	5873.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:485,302:0.38:787
chr19	16631147	rs74909346	G	A	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:284,188:0.40:472
chr19	16631322	rs2303119	T	C	2121.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:195,120:0.38:315
chr19	16631776	rs8111801	G	C	5348.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:382,271:0.42:653
chr19	16633950	rs1043481	T	C	4824.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr19	16639121	rs12459056	C	G	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:151,75:0.33:226
chr19	16641561	rs77142035	C	T	8467.77	.	AC=1;AF=0.500;AN=2;DB;DP=1022;set=Intersection	GT:AD:AF:DP	0/1:590,430:0.42:1020
chr19	16652908	rs117078420	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:26,36:0.58:62
chr19	16653249	rs45528635	G	A	2829.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:200,149:0.43:349
chr19	16665857	rs731617	C	T	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:61,56:0.48:117
chr19	16666101	rs2287869	G	C	4620.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:186,228:0.55:414
chr19	16771969	rs142570025	C	T	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.056;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=5.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.65;ReadPosRankSum=-1.256;SOR=1.699;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr19	16797240	rs2249827	A	G	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.707;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	16798927	rs2547112	T	C	45997.77	.	AC=2;AF=1.00;AN=2;DB;DP=1763;set=Intersection	GT:AD:AF:DP	1/1:0,1758:1.00:1758
chr19	16842052	rs8107776	G	T	3157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.226;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=-0.516;SOR=0.546;set=HC	GT:AD:AF:DP	0/1:95,148:0.61:243
chr19	16855265	rs812847	A	G	6467.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.93;ReadPosRankSum=-0.136;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:241,301:0.56:542
chr19	16860105	rs706764	G	A	26151.77	.	AC=2;AF=1.00;AN=2;DB;DP=984;set=Intersection	GT:AD:AF:DP	1/1:0,982:1.00:982
chr19	16860882	rs61746179	G	A	8827.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:266,381:0.59:647
chr19	16872940	rs773852	G	A	6561.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:165,287:0.63:452
chr19	16876099	rs4808526	T	C	6553.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	16899838	rs2608737	A	T	3126.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	16905474	rs2431802	G	T	1210.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	16923494	rs773894	C	G	8450.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=1.518;set=HC	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	16957638	rs2241377	A	C	1436.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:1,47:0.98:48
chr19	16976117	rs10625481	A	AC	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.115;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.021;MLEAC=1;MLEAF=0.500;MQ=61.78;MQRankSum=1.667;QD=14.80;ReadPosRankSum=0.928;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	16976286	rs773911	A	G	5290.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	16988456	rs2303090	A	G	5037.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	16988476	rs2258663	T	C	3804.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	17006714	.	GCA	G	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=1.061;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=3.201;QD=1.53;ReadPosRankSum=1.029;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:88,17:0.16:105
chr19	17011950	rs77345177	A	AC	19306.73	.	AC=2;AF=1.00;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	1/1:0,542:1.00:542
chr19	17025292	rs706761	G	A	6718.77	.	AC=1;AF=0.500;AN=2;DB;DP=917;set=Intersection	GT:AD:AF:DP	0/1:564,351:0.38:915
chr19	17056294	rs8100610	G	C	3485.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:115,153:0.57:268
chr19	17062644	rs8108234	T	C	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:51,56:0.52:107
chr19	17068524	rs1457091	G	A	1446.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:31,58:0.65:89
chr19	17068621	rs1457090	C	G	5714.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:185,263:0.59:448
chr19	17100552	rs1973093	A	G	25540.77	.	AC=2;AF=1.00;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	1/1:0,998:1.00:998
chr19	17100731	rs8101816	A	G	6908.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	17107910	rs117521081	C	T	25301.77	.	AC=2;AF=1.00;AN=2;DB;DP=950;set=Intersection	GT:AD:AF:DP	1/1:1,945:1.00:946
chr19	17111297	rs4808551	A	G	6603.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	17111411	rs4808064	A	G	9014.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chr19	17119560	rs897768	T	C	4022.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	17166981	rs2278997	G	A	1036.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	17169758	rs2305757	G	C	7059.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	17170540	rs1551552	GG	AT	3557.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	17170885	rs1130222	C	T	13913.77	.	AC=2;AF=1.00;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr19	17171035	.	TAA	T	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=6.69;ReadPosRankSum=0.956;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:73,49:0.40:122
chr19	17173487	rs3816550	A	G	13552.77	.	AC=2;AF=1.00;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr19	17179789	rs2305754	G	A	5274.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	17186127	rs2305752	A	C	63447.77	.	AC=2;AF=1.00;AN=2;DB;DP=1403;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=0.977;set=HC	GT:AD:AF:DP	1/1:0,1400:1.00:1400
chr19	17186136	rs2305751	C	A	66371.77	.	AC=2;AF=1.00;AN=2;DB;DP=1550;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,1547:1.00:1547
chr19	17283383	rs11463235	A	AG	3910.73	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,111:0.99:112
chr19	17311226	rs117099942	G	A	1598.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:39,64:0.62:103
chr19	17316697	rs12327728	C	G	5990.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr19	17321786	.	CTT	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.032;ClippingRankSum=-0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=0.277;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	17326567	rs388484	A	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr19	17330060	rs414528	T	C	20190.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;MQ=60.01;set=Intersection	GT:AD:AF:DP	1/1:0,786:1.00:786
chr19	17330525	rs200419019	A	G	2247.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:82,102:0.55:184
chr19	17374726	rs8112782	G	C	4309.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:182,190:0.51:372
chr19	17382505	rs10420922	A	T	4215.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:101,187:0.65:288
chr19	17392483	rs7246262	C	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	17392894	rs8100241	G	A	1948.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:137,97:0.41:234
chr19	17393015	rs1864116	C	T	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	17393504	rs1864113	G	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	17393530	rs8108174	T	A	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:51,42:0.45:93
chr19	17393925	rs56069439	C	A	1583.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr19	17394124	rs2363956	T	G	5358.77	.	AC=1;AF=0.500;AN=2;DB;DP=687;set=Intersection	GT:AD:AF:DP	0/1:412,275:0.40:687
chr19	17394504	rs891017	A	C	60081.77	.	AC=2;AF=1.00;AN=2;DB;DP=2250;set=Intersection	GT:AD:AF:DP	1/1:1,2243:1.00:2244
chr19	17395003	rs11086065	A	G	12353.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:1,442:1.00:443
chr19	17395055	rs11882562	C	G	6366.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	17395182	rs4808614	G	T	1260.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	17395192	rs60208686	CT	C	857.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	17396549	rs751599	T	C	9215.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	17396761	rs891018	T	C	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	17397481	rs1465581	G	T	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.970;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.571;QD=5.84;ReadPosRankSum=0.507;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:123,49:0.28:172
chr19	17397483	rs367668712	G	T	2023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.367;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.972;QD=11.70;ReadPosRankSum=1.169;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:90,83:0.48:173
chr19	17397493	rs371454519	G	T	1286.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=2.698;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.971;QD=6.70;ReadPosRankSum=1.665;SOR=0.513;set=HC	GT:AD:AF:DP	0/1:112,80:0.42:192
chr19	17397495	.	GTGTGTT	G	678.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.890;ClippingRankSum=0.000;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=-1.536;QD=4.71;ReadPosRankSum=-1.417;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:105,39:0.27:144
chr19	17397497	.	GTGTT	G	1822.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.666;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=1.106;QD=13.21;ReadPosRankSum=0.252;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:63,75:0.54:138
chr19	17397700	rs10401700	A	C	1718.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	17403414	rs113634768	C	G	1389.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:37,56:0.60:93
chr19	17416590	rs3217329	CT	C	4866.73	.	AC=1;AF=0.500;AN=2;DB;DP=402;MQ=60.16;set=Intersection	GT:AD:AF:DP	0/1:154,246:0.61:400
chr19	17417080	rs11548548	C	T	4466.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:204,217:0.52:421
chr19	17424932	rs2288463	A	G	2058.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:79,91:0.54:170
chr19	17424947	rs12327712	T	G	2203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.477;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=-0.018;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:77,99:0.56:176
chr19	17434587	rs12977101	T	G	271.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.480;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=-0.774;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:17,16:0.48:33
chr19	17435851	rs755124	G	T	6050.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:207,276:0.57:483
chr19	17435884	rs755123	T	C	7071.77	.	AC=1;AF=0.500;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	0/1:255,339:0.57:594
chr19	17438642	rs8102944	A	G	10773.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:362,488:0.57:850
chr19	17438923	rs113207944	C	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:105,50:0.32:155
chr19	17438930	.	G	GGCGAGGCCCCGCCCCCT	2253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.454;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=4.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.69;ReadPosRankSum=-0.048;SOR=1.117;set=HC	GT:AD:AF:DP	0/1:95,40:0.30:135
chr19	17439320	rs76655932	C	T	2967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.297;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=0.958;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=0.000;QD=11.33;ReadPosRankSum=-1.228;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:122,140:0.53:262
chr19	17441093	rs75616124	G	T	5930.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:202,266:0.57:468
chr19	17441909	rs61734355	T	G	9822.77	.	AC=1;AF=0.500;AN=2;DB;DP=803;set=Intersection	GT:AD:AF:DP	0/1:339,461:0.58:800
chr19	17443891	rs79771034	G	A	7792.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:210,358:0.63:568
chr19	17448961	rs1864112	A	C	30483.77	.	AC=1;AF=0.500;AN=2;DB;DP=2734;set=Intersection	GT:AD:AF:DP	0/1:1245,1485:0.54:2730
chr19	17449157	rs75326392	C	G	14060.77	.	AC=1;AF=0.500;AN=2;DB;DP=1327;set=Intersection	GT:AD:AF:DP	0/1:667,655:0.50:1322
chr19	17449602	rs75211789	C	T	18299.77	.	AC=1;AF=0.500;AN=2;DB;DP=1558;set=Intersection	GT:AD:AF:DP	0/1:702,853:0.55:1555
chr19	17449699	rs45541332	A	G	8813.77	.	AC=1;AF=0.500;AN=2;DB;DP=685;set=Intersection	GT:AD:AF:DP	0/1:315,367:0.54:682
chr19	17450016	rs3810206	T	C	6662.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:285,327:0.53:612
chr19	17451736	rs75893526	C	T	2139.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:70,93:0.57:163
chr19	17452527	rs919333	G	T	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:46,52:0.53:98
chr19	17471723	.	CT	C	127.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=5.632;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.548;QD=1.49;ReadPosRankSum=0.156;SOR=0.261;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr19	17488141	rs10417806	A	C	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:85,93:0.52:178
chr19	17502698	rs2278235	G	A	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	17514440	rs919265	G	C	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	17514646	rs113321277	T	TGGG	31057.73	.	AC=2;AF=1.00;AN=2;DB;DP=741;set=Intersection	GT:AD:AF:DP	1/1:2,708:1.00:710
chr19	17516400	rs111617488	A	AGCTGAAAG	17199.73	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	17531450	rs2303680	G	A	10374.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,383:1.00:383
chr19	17531990	rs10679842	C	CT,CTT	2123.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.795;ClippingRankSum=0.000;DB;DP=344;ExcessHet=3.0103;FS=1.820;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=11.86;ReadPosRankSum=1.313;SOR=1.371;set=HC	GT:AD:AF:DP	1/2:40,57,82:0.32,0.46:179
chr19	17533126	rs2303678	A	G	2544.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:195,128:0.40:323
chr19	17534693	rs2288408	T	C	10869.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	17534898	rs13345062	C	T	4259.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:131,191:0.59:322
chr19	17535472	rs35944915	G	A	3317.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:160,161:0.50:321
chr19	17535546	rs4808636	C	T	7420.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	17535658	rs4808637	A	C	24562.77	.	AC=2;AF=1.00;AN=2;DB;DP=939;set=Intersection	GT:AD:AF:DP	1/1:0,935:1.00:935
chr19	17535867	rs201974585	CCTCACTGCATCCTGGGGCCACCCCCA	C	3572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=6.022;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=3.095;QD=21.14;ReadPosRankSum=-2.842;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:76,93:0.55:169
chr19	17544165	rs10415889	C	T	7524.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	17544244	rs34189069	C	T	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:179,92:0.34:271
chr19	17547292	rs4808641	A	G	6802.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	17556054	rs3810209	A	G	11892.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr19	17559076	rs4808643	T	C	8301.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	17571200	rs12984622	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	17571489	rs150719211	C	T	3537.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:281,181:0.39:462
chr19	17571766	rs890839	A	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	17597830	rs12979251	G	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	17611261	rs3746318	G	A	20762.77	.	AC=2;AF=1.00;AN=2;DB;DP=862;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr19	17611490	rs11879407	T	G	25869.77	.	AC=2;AF=1.00;AN=2;DB;DP=986;set=Intersection	GT:AD:AF:DP	1/1:2,980:1.00:982
chr19	17612251	rs11668681	T	C	13077.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,503:1.00:503
chr19	17622614	rs11086075	C	T	4956.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	17628587	rs6743	A	G	26847.77	.	AC=2;AF=1.00;AN=2;DB;DP=1055;set=Intersection	GT:AD:AF:DP	1/1:0,1053:1.00:1053
chr19	17628737	rs8104468	T	C	6665.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr19	17643065	rs12984143	T	C	9346.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	17644224	rs66723561	CAA	C	876.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.31;QD=24.35;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:3,33:0.92:36
chr19	17648350	rs8107859	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	17651370	rs11878663	A	G	10536.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	17660300	rs11666267	G	A	16094.77	.	AC=2;AF=1.00;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr19	17666636	rs7259723	C	T	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	17679597	rs3848645	A	G	7952.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,264:1.00:265
chr19	17691751	rs891184	C	T	2226.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:163,108:0.40:271
chr19	17692324	rs8100092	T	G	8522.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	17721045	rs140453033	C	A	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:49,62:0.56:111
chr19	17728502	rs2287851	T	C	4694.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:131,212:0.62:343
chr19	17728754	rs139040835	C	T	645.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:51,30:0.37:81
chr19	17729148	rs2287849	C	T	2654.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:75,101:0.57:176
chr19	17729672	rs56145097	T	TG	8425.73	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:308,410:0.57:718
chr19	17729787	rs56257446	T	G	3773.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:127,167:0.57:294
chr19	17734488	rs10419420	A	G	2255.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	17737435	rs12610816	A	G	2999.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:108,142:0.57:250
chr19	17737650	rs12609205	G	A	4912.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:134,218:0.62:352
chr19	17738466	rs3810441	T	C	3217.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:102,140:0.58:242
chr19	17738850	rs56388321	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:35,40:0.53:75
chr19	17741047	rs10413821	A	G	3077.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:112,147:0.57:259
chr19	17744075	rs71162163	G	GC	2848.73	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:118,110:0.48:228
chr19	17746940	rs77267738	C	T	3781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.202;ClippingRankSum=0.000;DB;DP=304;ExcessHet=3.0103;FS=0.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=0.435;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:125,177:0.59:302
chr19	17746947	rs4239634	A	G	10451.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=37.33;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	17750183	rs11882798	T	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:73,90:0.55:163
chr19	17750207	rs11879994	C	A	2140.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:66,99:0.60:165
chr19	17760232	rs11665838	C	T	3233.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:253,163:0.39:416
chr19	17760561	rs11665951	C	T	1269.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	17763392	rs1159365	A	G	15906.77	.	AC=2;AF=1.00;AN=2;DB;DP=600;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr19	17766900	rs34752754	C	T	8074.77	.	AC=1;AF=0.500;AN=2;DB;DP=646;set=Intersection	GT:AD:AF:DP	0/1:275,369:0.57:644
chr19	17768818	rs1157615	A	G	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:44,37:0.46:81
chr19	17769166	rs7258943	C	T	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	17774512	rs12151017	C	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:19,29:0.60:48
chr19	17777431	rs10424761	A	G	6455.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	17777508	rs9305092	C	G	4354.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	17778832	rs7248783	A	G	21004.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.85;SOR=1.436;set=HC	GT:AD:AF:DP	1/1:0,570:1.00:570
chr19	17778832	.	AAG	GAA,GAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=174,341;NR=108,191;PP=2944,2962;QD=20;SC=AGGGAAAGACAAGCTTAGAGA;SbPval=0.36;Source=Platypus;TC=540;TCF=349;TCR=191;TR=282,532;WE=17778842;WS=17778822;set=Platypus	GT:AF:DP	0/1:0.52:540
chr19	17778834	rs181028626	G	A	7289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=0.542;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.40;ReadPosRankSum=-1.120;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:263,325:0.55:588
chr19	17779041	rs111451373	TGCCGCTCA	T	11044.73	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:221,284:0.56:505
chr19	17786766	rs112409090	GAGAC	G	920.73	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:55,27:0.33:82
chr19	17799246	rs140985715	T	TG	2422.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.541;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.844;QD=8.50;ReadPosRankSum=0.129;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:175,110:0.39:285
chr19	17881171	rs12327667	G	A	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:2,237:0.99:239
chr19	17881552	rs3746197	C	T	2264.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	17885270	rs2287859	A	G	4698.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	17885308	rs2287858	G	A	3904.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	17885325	rs2287857	A	C	3275.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	17885336	rs2287856	C	T	2675.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	17886940	rs2287854	G	A	10674.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	17887024	rs2287853	T	C	14739.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr19	17888787	rs4808690	G	A	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	17892193	rs2287852	G	C	13231.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,481:1.00:481
chr19	17892478	rs2042299	A	G	5474.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	17892591	rs2042298	A	G	13685.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr19	17892796	rs67498129	CTTTTTTTTTTTTTTTT	C	2115.73	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	17898717	rs265553	G	A	1017.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:84,55:0.40:139
chr19	17922795	rs36686	G	A	13837.77	.	AC=1;AF=0.500;AN=2;DB;DP=1156;set=Intersection	GT:AD:AF:DP	0/1:504,649:0.56:1153
chr19	17931077	rs10410852	A	G	188.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	17937429	rs3008	A	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:87,60:0.41:147
chr19	17941294	rs2302603	T	C	1633.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:69,74:0.52:143
chr19	17942005	rs3212774	A	G	5219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.883;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=1.177;QD=12.86;ReadPosRankSum=-1.060;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:171,235:0.58:406
chr19	17948732	rs3212752	T	C	16735.77	.	AC=1;AF=0.500;AN=2;DB;DP=1471;set=Intersection	GT:AD:AF:DP	0/1:653,810:0.55:1463
chr19	17955001	rs3212713	C	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.880;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-0.511;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:24,20:0.45:44
chr19	17955001	.	CCC	TCT	591	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=3;HapScore=3;MGOF=11;MMLQ=27;MQ=60.0;NF=14;NR=4;PP=591;QD=35.8037708257;SC=CCCACACAGCCCCATCCTTCC;SbPval=0.69;Source=Platypus;TC=39;TCF=29;TCR=10;TR=18;WE=17955011;WS=17954991;set=Platypus	GT:AD:AF:DP	0/1:21,18:0.46:39
chr19	17955003	rs3212712	C	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=-0.797;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:24,21:0.47:45
chr19	17955021	rs3212711	G	A	573.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:29,28:0.49:57
chr19	17958777	rs7254346	T	C	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:95,142:0.60:237
chr19	17959012	rs13345965	C	T	1201.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:21,49:0.70:70
chr19	17994393	rs73520742	T	G	1687.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:106,76:0.42:182
chr19	17994635	rs55910163	C	T	1646.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:127,87:0.41:214
chr19	18001686	rs4808708	G	A	4688.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	18001839	rs4808709	A	G	9255.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr19	18004393	rs35036312	G	A	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	18047283	rs4808722	T	G	6602.77	.	AC=1;AF=0.500;AN=2;DB;DP=539;set=Intersection	GT:AD:AF:DP	0/1:237,302:0.56:539
chr19	18053340	rs4808105	T	C	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:17,18:0.51:35
chr19	18092442	rs11666833	G	A	2548.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:104,114:0.52:218
chr19	18108956	rs4808732	C	G	6853.77	.	AC=1;AF=0.500;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	0/1:298,333:0.53:631
chr19	18110890	rs4808110	C	T	1424.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:82,70:0.46:152
chr19	18110994	rs4808733	T	C	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	18112361	rs113540008	C	T	1267.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:112,68:0.38:180
chr19	18172043	rs67773732	G	GT	340.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=14.569;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.826;QD=4.48;ReadPosRankSum=1.461;SOR=0.057;set=HC	GT:AD:AF:DP	0/1:41,35:0.46:76
chr19	18182266	rs2045386	G	A	399.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr19	18218444	rs62123561	A	G	3865.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:262,199:0.43:461
chr19	18232754	rs11086090	G	T	3326.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:293,180:0.38:473
chr19	18232778	rs273483	A	G	10181.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr19	18233279	rs273486	C	G	881.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	18233283	rs55849352	C	CG	337.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	18234005	rs12611216	G	A	9063.77	.	AC=1;AF=0.500;AN=2;DB;DP=1028;set=Intersection	GT:AD:AF:DP	0/1:556,470:0.46:1026
chr19	18234441	rs740691	C	T	4569.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:171,215:0.56:386
chr19	18234567	rs740692	G	T	586.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:32,23:0.42:55
chr19	18235352	rs123202	T	G	6824.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	18235424	rs123203	T	C	15663.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr19	18242669	rs3826967	G	C	1120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.513;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.05;ReadPosRankSum=0.922;SOR=1.645;set=HC	GT:AD:AF:DP	0/1:47,46:0.49:93
chr19	18242675	rs273497	C	T	3624.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.19;SOR=5.610;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	18245512	rs2270623	C	T	10034.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.791;ClippingRankSum=0.000;DB;DP=905;ExcessHet=3.0103;FS=0.524;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.14;ReadPosRankSum=-0.812;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:411,490:0.54:901
chr19	18245807	rs12983325	C	T	4486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;ClippingRankSum=0.000;DB;DP=361;ExcessHet=3.0103;FS=0.817;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=-0.170;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:149,209:0.58:358
chr19	18245813	rs273499	T	C	12561.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.84;SOR=1.037;set=HC	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	18248146	rs541225	T	C	35884.77	.	AC=2;AF=1.00;AN=2;DB;DP=1404;set=Intersection	GT:AD:AF:DP	1/1:0,1401:1.00:1401
chr19	18252829	rs613339	A	G	6598.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	18255359	rs8108738	G	A	5133.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:189,231:0.55:420
chr19	18255593	rs11086092	A	G	3450.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:198,169:0.46:367
chr19	18256418	rs11305984	TC	T	5025.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	18257750	rs2072490	C	T	6639.77	.	AC=1;AF=0.500;AN=2;DB;DP=629;set=Intersection	GT:AD:AF:DP	0/1:307,321:0.51:628
chr19	18257875	rs273279	C	T	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:40,51:0.56:91
chr19	18258459	rs1566030	A	G	4944.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	18272190	rs2241088	A	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	18273047	rs1011320	T	C	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	18273410	rs2006885	A	G	3159.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	18276856	rs4808755	T	C	1012.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	18277206	rs3730179	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.399;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=8.060;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.70;ReadPosRankSum=2.056;SOR=1.802;set=HC	GT:AD:AF:DP	0/1:24,27:0.53:51
chr19	18279638	rs273269	T	C	21900.77	.	AC=2;AF=1.00;AN=2;DB;DP=849;set=Intersection	GT:AD:AF:DP	1/1:0,843:1.00:843
chr19	18279816	rs3746187	A	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:128,95:0.43:223
chr19	18280044	rs112813367	C	T	2776.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:90,129:0.59:219
chr19	18284651	rs2241089	G	T	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:277,218:0.44:495
chr19	18285751	rs2241090	G	C	1627.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:106,74:0.41:180
chr19	18286546	rs200373	T	A	1354.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:93,69:0.43:162
chr19	18288069	rs7125	A	G	5127.77	.	AC=1;AF=0.500;AN=2;DB;DP=728;set=Intersection	GT:AD:AF:DP	0/1:442,282:0.39:724
chr19	18305578	rs16982263	G	C	1170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.010;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.417;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-2.357;SOR=0.830;set=HC	GT:AD:AF:DP	0/1:77,58:0.43:135
chr19	18306751	rs62120383	G	A	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:224,172:0.43:396
chr19	18306990	rs17683509	G	C	7879.77	.	AC=1;AF=0.500;AN=2;DB;DP=933;set=Intersection	GT:AD:AF:DP	0/1:533,399:0.43:932
chr19	18308508	rs8109807	C	T	1163.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:91,66:0.42:157
chr19	18309365	rs2271882	A	G	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:36,31:0.46:67
chr19	18311111	rs3803919	A	G	4695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;ClippingRankSum=0.000;DB;DP=663;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.81;ReadPosRankSum=4.475;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:353,248:0.41:601
chr19	18311199	rs1046565	A	G	7310.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:468,375:0.44:843
chr19	18322095	rs12611244	G	A	2130.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:132,95:0.42:227
chr19	18329240	rs1042050	T	C	6882.77	.	AC=1;AF=0.500;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	0/1:486,351:0.42:837
chr19	18329784	rs2229228	C	T	1366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.76;ReadPosRankSum=-0.889;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:60,67:0.53:127
chr19	18331357	rs5827400	AC	A	3742.73	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:165,155:0.48:320
chr19	18331859	.	T	TCCGCCAGGCCCCGCCCCACC	562.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.93;ReadPosRankSum=1.388;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chr19	18337260	rs4808768	G	A	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:28,18:0.39:46
chr19	18344273	rs35421958	AC	A	13859.73	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:2,471:1.00:473
chr19	18368529	rs61740687	C	T	5595.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:181,262:0.59:443
chr19	18368810	rs999813	G	T	17757.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr19	18369120	rs2891654	G	A	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	0/1:219,163:0.43:382
chr19	18369148	rs199647290	C	CCCA	7568.73	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:140,190:0.58:330
chr19	18369369	rs112818372	T	C	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:45,59:0.57:104
chr19	18375531	rs113185969	G	A	10953.77	.	AC=1;AF=0.500;AN=2;DB;DP=859;set=Intersection	GT:AD:AF:DP	0/1:364,494:0.58:858
chr19	18375608	rs8102923	G	A	7028.77	.	AC=1;AF=0.500;AN=2;DB;DP=772;set=Intersection	GT:AD:AF:DP	0/1:443,327:0.42:770
chr19	18375815	rs8103177	G	A	10359.77	.	AC=1;AF=0.500;AN=2;DB;DP=1051;set=Intersection	GT:AD:AF:DP	0/1:547,499:0.48:1046
chr19	18375846	rs2277921	G	A	8995.77	.	AC=1;AF=0.500;AN=2;DB;DP=880;set=Intersection	GT:AD:AF:DP	0/1:459,418:0.48:877
chr19	18375882	rs12608777	G	C	6479.77	.	AC=1;AF=0.500;AN=2;DB;DP=718;set=Intersection	GT:AD:AF:DP	0/1:395,321:0.45:716
chr19	18376407	rs8110972	T	A	5379.77	.	AC=1;AF=0.500;AN=2;DB;DP=627;set=Intersection	GT:AD:AF:DP	0/1:353,272:0.44:625
chr19	18376517	rs61740752	C	T	4479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.539;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.34;ReadPosRankSum=-2.670;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:380,230:0.38:610
chr19	18376522	rs2277922	T	G	20018.77	.	AC=2;AF=1.00;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr19	18377274	rs3746186	A	G	3011.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:194,153:0.44:347
chr19	18377496	rs8104533	C	G	8869.77	.	AC=1;AF=0.500;AN=2;DB;DP=1162;set=Intersection	GT:AD:AF:DP	0/1:692,466:0.40:1158
chr19	18377647	rs8103906	G	C	11198.77	.	AC=2;AF=1.00;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr19	18377761	rs12609001	A	G	3239.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:289,169:0.37:458
chr19	18378219	rs1469023	A	G	12962.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:1,478:1.00:479
chr19	18391171	rs7249	C	T	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chr19	18392873	rs7247222	C	A	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:121,94:0.44:215
chr19	18420704	rs2227270	C	A	2083.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:160,107:0.40:267
chr19	18423402	rs2232968	T	C	25014.77	.	AC=2;AF=1.00;AN=2;DB;DP=957;set=Intersection	GT:AD:AF:DP	1/1:0,953:1.00:953
chr19	18423638	rs2232967	C	G	1902.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:59,73:0.55:132
chr19	18426950	rs2232965	T	C	3554.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	18451381	rs7251555	A	T	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr19	18451661	rs4808784	C	T	482.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:31,23:0.43:54
chr19	18453629	rs66732430	G	A	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:93,65:0.41:158
chr19	18453813	rs113926271	C	CT	364.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.294;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:48,33:0.41:81
chr19	18466840	rs34068189	C	T	2899.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:261,156:0.37:417
chr19	18497024	rs1059519	G	C	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr19	18499422	rs1058587	C	G	20523.77	.	AC=2;AF=1.00;AN=2;DB;DP=758;set=Intersection	GT:AD:AF:DP	1/1:0,753:1.00:753
chr19	18499780	rs1227733	A	G	11610.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.81;SOR=1.356;set=HC	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	18499784	rs1055150	C	G	11359.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.383;set=HC	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	18502728	rs6512264	C	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	18502835	rs6512265	G	A	5425.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	18503093	rs6512266	T	G	1990.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	18541579	rs11395316	G	GA	12355.73	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr19	18544498	rs2544723	A	C	3808.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.34;SOR=2.861;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	18544501	rs62122438	C	T	4099.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.06;SOR=2.732;set=HC	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	18544505	rs2544724	G	C	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.53;SOR=2.376;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	18544677	rs78783575	G	GC	7937.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	18572355	rs117956919	C	T	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:87,66:0.43:153
chr19	18650278	rs7247733	T	C	13142.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr19	18652844	rs10854166	A	G	9091.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	18675612	rs62137086	T	G	14033.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr19	18675854	rs10692700	G	GGGC	18947.73	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr19	18679075	rs5827417	CA	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.528;SOR=1.296;set=HC	GT:AD:AF:DP	0/1:48,31:0.39:79
chr19	18679155	rs1468475	C	T	14270.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr19	18679379	rs7648	C	G	29632.77	.	AC=2;AF=1.00;AN=2;DB;DP=1096;set=Intersection	GT:AD:AF:DP	1/1:0,1095:1.00:1095
chr19	18684563	rs2302055	C	T	13394.77	.	AC=2;AF=1.00;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	1/1:0,506:1.00:506
chr19	18685964	rs6554	G	T	7364.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr19	18699489	rs10415257	T	C	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.09;ReadPosRankSum=0.862;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	18699990	rs2074174	T	C	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:295,232:0.44:527
chr19	18700047	rs2074175	A	G	8112.77	.	AC=1;AF=0.500;AN=2;DB;DP=1022;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:604,414:0.41:1018
chr19	18701499	rs7258589	C	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chr19	18703077	rs3170474	T	C	493.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:26,25:0.49:51
chr19	18704528	rs7256319	C	T	1314.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr19	18707878	rs7247346	A	C	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:93,67:0.42:160
chr19	18709175	rs35521276	C	T	1951.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr19	18709768	rs8108207	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:51,41:0.45:92
chr19	18731439	rs7258375	C	G	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:82,68:0.45:150
chr19	18857939	rs373778758	AC	A	396.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.253;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.007;QD=1.98;ReadPosRankSum=-0.679;SOR=0.231;set=HC	GT:AD:AF:DP	0/1:162,38:0.19:200
chr19	18876208	rs79054960	C	G	12772.77	.	AC=1;AF=0.500;AN=2;DB;DP=1180;set=Intersection	GT:AD:AF:DP	0/1:558,618:0.53:1176
chr19	18897526	rs5827423	A	AG	8018.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	18942888	rs4808161	C	G	4304.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	18956699	rs59045002	G	A	1023.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:80,44:0.35:124
chr19	18971322	rs757115	T	C	1112.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:58,45:0.44:103
chr19	18974200	rs2238658	A	G	3695.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:110,165:0.60:275
chr19	18979324	rs11673194	A	C	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	18980172	rs4808863	G	A	699.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.781;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.44;ReadPosRankSum=-0.084;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:53,41:0.44:94
chr19	18980213	rs4808864	A	G	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	18993503	rs62138063	C	T	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.40;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	19006648	rs113536478	A	G	683.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.66;ReadPosRankSum=2.349;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:20,34:0.63:54
chr19	19006666	rs3746263	G	C	1869.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	19014248	rs55988241	C	T	4502.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:149,209:0.58:358
chr19	19016785	rs73003085	G	A	7575.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:216,348:0.62:564
chr19	19017862	rs10330	G	A	3544.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:95,165:0.63:260
chr19	19019800	rs73003090	G	A	6474.77	.	AC=1;AF=0.500;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	0/1:227,305:0.57:532
chr19	19021970	rs1468461	T	C	6826.77	.	AC=1;AF=0.500;AN=2;DB;DP=520;set=Intersection	GT:AD:AF:DP	0/1:211,309:0.59:520
chr19	19030689	rs2231993	C	G	8172.77	.	AC=1;AF=0.500;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	0/1:293,396:0.57:689
chr19	19032637	rs2231997	T	C	10075.77	.	AC=1;AF=0.500;AN=2;DB;DP=857;set=Intersection	GT:AD:AF:DP	0/1:367,487:0.57:854
chr19	19033089	rs2158004	G	A	2639.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:90,121:0.57:211
chr19	19033387	rs2106660	G	A	10904.77	.	AC=1;AF=0.500;AN=2;DB;DP=912;set=Intersection	GT:AD:AF:DP	0/1:395,515:0.57:910
chr19	19035159	rs5827425	CT	C	2878.73	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:83,94:0.53:177
chr19	19035370	rs1476505	G	C	7377.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:245,336:0.58:581
chr19	19037053	rs2301661	T	C	15201.77	.	AC=1;AF=0.500;AN=2;DB;DP=1240;set=Intersection	GT:AD:AF:DP	0/1:525,714:0.58:1239
chr19	19037294	rs2301662	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr19	19039908	rs62138076	G	A	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:107,148:0.58:255
chr19	19040312	rs1059240	G	C	8914.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	19049194	rs11540741	G	A	4104.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:293,213:0.42:506
chr19	19049198	rs1064351	G	A	6392.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:216,309:0.59:525
chr19	19105773	rs3180770	G	A	11687.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr19	19120591	rs55722325	A	T	703.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr19	19135319	rs6511010	A	G	2717.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	19136541	rs4808907	C	T	27238.77	.	AC=2;AF=1.00;AN=2;DB;DP=1004;set=Intersection	GT:AD:AF:DP	1/1:0,1003:1.00:1003
chr19	19145193	rs2269806	G	A	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	19150183	rs12979565	C	T	5273.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	19151692	rs8104799	T	C	16293.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,620:1.00:620
chr19	19153801	rs3214143	G	GC	1981.73	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	19168183	rs7258637	C	T	1356.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	19212823	.	G	GT	697.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.620;ClippingRankSum=0.000;DP=185;ExcessHet=3.0103;FS=1.945;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.247;QD=5.49;ReadPosRankSum=-1.966;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:68,59:0.46:127
chr19	19215612	rs56247515	T	TA	1917.73	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:43,59:0.58:102
chr19	19230868	rs756791	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	19243843	rs10414676	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	19245771	rs3746259	A	G	5152.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:1,197:0.99:198
chr19	19256870	rs2238663	G	A	235.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,12:0.41:29
chr19	19267802	rs7256766	A	G	413.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:21,20:0.49:41
chr19	19267990	rs7257072	C	T	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.96;ReadPosRankSum=-1.224;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:119,89:0.43:208
chr19	19348947	rs12981871	T	C	3106.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	19359500	rs10423874	C	G	4358.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:117,197:0.63:314
chr19	19359854	.	TTGTGTGTG	TTGTGTGTGTG,T	112.90	.	AC=2,0;AF=1.00,0.00;AN=2;DP=41;set=Intersection	GT:AF:DP	1/1:1.00:5
chr19	19369435	rs2074295	A	G	15710.77	.	AC=1;AF=0.500;AN=2;DB;DP=1352;set=Intersection	GT:AD:AF:DP	0/1:599,746:0.55:1345
chr19	19372150	rs7257875	C	T	8195.77	.	AC=1;AF=0.500;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	0/1:269,367:0.58:636
chr19	19372185	rs10422893	G	C	13710.77	.	AC=1;AF=0.500;AN=2;DB;DP=1070;set=Intersection	GT:AD:AF:DP	0/1:453,615:0.58:1068
chr19	19375372	rs72999053	G	A	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:24,16:0.40:40
chr19	19378671	rs998732	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:35,64:0.65:99
chr19	19380596	rs72999063	G	T	1908.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:80,87:0.52:167
chr19	19380646	rs2074299	T	C	1546.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:52,65:0.56:117
chr19	19380685	rs72999068	A	G	2068.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:60,91:0.60:151
chr19	19381728	rs2074302	G	C	5063.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:156,229:0.59:385
chr19	19381755	rs2074303	C	T	7774.77	.	AC=1;AF=0.500;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	0/1:240,350:0.59:590
chr19	19387356	rs2010506	C	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,21:0.57:37
chr19	19387743	rs2074550	A	C	4176.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:131,194:0.60:325
chr19	19388057	rs2074551	G	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.139;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=6.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=19.91;ReadPosRankSum=-0.371;SOR=3.056;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	19388060	rs4808191	C	T	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.100;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=9.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=29.22;ReadPosRankSum=-1.611;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	19390185	rs11555053	G	A	919.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:23,38:0.62:61
chr19	19408209	rs143856162	A	ATTCTGGGCAGGAGCAGTTCTGGCC	5522.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=10.506;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=3.635;QD=19.18;ReadPosRankSum=2.410;SOR=1.238;set=HC	GT:AD:AF:DP	0/1:142,146:0.51:288
chr19	19413092	rs17751061	C	T	4754.77	.	AC=1;AF=0.500;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	0/1:204,236:0.54:440
chr19	19413381	rs2315022	A	G	1038.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	19413393	rs2315023	C	T	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:17,28:0.62:45
chr19	19431423	rs3934667	T	G	877.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:152,80:0.34:232
chr19	19431963	rs12460764	G	T	5079.77	.	AC=1;AF=0.500;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	0/1:444,266:0.37:710
chr19	19446936	rs769267	G	A	2472.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:214,132:0.38:346
chr19	19447933	rs34414052	G	GT	2827.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;ClippingRankSum=0.000;DB;DP=535;ExcessHet=3.0103;FS=0.526;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.025;QD=5.87;ReadPosRankSum=0.273;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:263,219:0.45:482
chr19	19449603	rs2074089	G	A	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:239,183:0.43:422
chr19	19449686	rs2074090	G	T	4666.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:267,229:0.46:496
chr19	19451591	rs2965190	A	G	1817.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:163,99:0.38:262
chr19	19453521	rs2965191	T	G	3595.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.179;ClippingRankSum=0.000;DB;DP=613;ExcessHet=3.0103;FS=5.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=2.566;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:387,211:0.35:598
chr19	19453560	rs2301669	C	A	3717.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:390,205:0.34:595
chr19	19453742	rs2965192	A	G	4349.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	19454828	rs2965193	G	A	1939.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:127,96:0.43:223
chr19	19545990	rs2916076	T	C	3449.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:116,159:0.58:275
chr19	19547086	rs2916077	T	C	6684.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	19606443	rs3067692	T	TAA	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.717;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.38;ReadPosRankSum=-0.819;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:20,16:0.44:36
chr19	19606481	rs113249403	TA	T	1105.73	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:55,50:0.48:105
chr19	19606634	rs1047361	G	A	4241.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:109,180:0.62:289
chr19	19613381	rs892022	G	A	4385.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:139,180:0.56:319
chr19	19615981	rs111762799	T	TG	1034.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:23,41:0.64:64
chr19	19616026	rs3752151	T	C	2432.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:51,100:0.66:151
chr19	19625547	rs7250893	A	G	7830.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:273,353:0.56:626
chr19	19626734	rs80007081	A	G	3951.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:201,186:0.48:387
chr19	19626769	rs17684164	C	T	6467.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:281,303:0.52:584
chr19	19626781	rs77254326	T	G	7265.77	.	AC=1;AF=0.500;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	0/1:286,347:0.55:633
chr19	19637930	rs7251447	A	G	3623.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	19638218	rs75525243	G	A	4450.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:95,190:0.67:285
chr19	19638743	rs45631651	A	G	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:51,101:0.66:152
chr19	19643343	rs113527843	A	T	5085.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:167,227:0.58:394
chr19	19643636	rs8100927	C	G	9731.77	.	AC=1;AF=0.500;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	0/1:402,450:0.53:852
chr19	19646272	rs2304098	T	C	11837.77	.	AC=1;AF=0.500;AN=2;DB;DP=1022;set=Intersection	GT:AD:AF:DP	0/1:445,575:0.56:1020
chr19	19648346	rs1054930	G	C	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:28,45:0.62:73
chr19	19649327	rs11670761	G	C	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:28,30:0.52:58
chr19	19651140	rs4808970	A	G	7701.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:218,338:0.61:556
chr19	19652157	rs76790018	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:21,30:0.59:51
chr19	19653524	rs34067609	G	A	4131.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:69,102:0.60:171
chr19	19653525	rs10664406	A	AAG	4122.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:69,104:0.60:173
chr19	19654117	rs7252453	G	C	5096.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:218,216:0.50:434
chr19	19654189	rs45556231	G	A	14912.77	.	AC=1;AF=0.500;AN=2;DB;DP=1256;set=Intersection	GT:AD:AF:DP	0/1:563,691:0.55:1254
chr19	19655670	rs11669558	C	T	12340.77	.	AC=1;AF=0.500;AN=2;DB;DP=1001;set=Intersection	GT:AD:AF:DP	0/1:437,562:0.56:999
chr19	19656615	rs61744761	C	T	7147.77	.	AC=1;AF=0.500;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	0/1:250,322:0.56:572
chr19	19735257	rs1266503	G	T	21627.77	.	AC=2;AF=1.00;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	1/1:0,818:1.00:818
chr19	19740729	rs880090	C	G	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:32,28:0.47:60
chr19	19750822	rs45458192	C	T	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:60,25:0.29:85
chr19	19750824	rs11298700	AG	A	822.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr19	19751456	rs2043293	C	A	2600.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	19753292	rs7248885	G	A	3408.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:198,173:0.47:371
chr19	19754149	rs4808975	G	C	2751.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:97,126:0.57:223
chr19	19756662	rs10405234	T	C	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:154,186:0.55:340
chr19	19758190	rs892035	T	C	12172.77	.	AC=2;AF=1.00;AN=2;DB;DP=487;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=25.00;SOR=1.283;set=HC	GT:AD:AF:DP	1/1:0,487:1.00:487
chr19	19765568	rs2288867	C	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:61,118:0.66:179
chr19	19770329	rs10403579	T	C	1053.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:37,46:0.55:83
chr19	19772722	rs919778	G	A	677.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:34,32:0.48:66
chr19	19773923	rs884480	G	A	7437.77	.	AC=1;AF=0.500;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	0/1:269,342:0.56:611
chr19	19822049	rs7246866	T	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	19824850	rs11085270	T	G	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:157,159:0.50:316
chr19	19825432	rs112215404	C	T	717.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:55,36:0.40:91
chr19	19843551	rs247774	A	G	5128.77	.	AC=1;AF=0.500;AN=2;DB;DP=521;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:275,243:0.47:518
chr19	19868879	rs247782	A	C	1845.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:110,89:0.45:199
chr19	19976701	rs2304169	A	T	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:145,104:0.42:249
chr19	19991082	.	GT	G	171.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.505;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=1.830;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=2.73;ReadPosRankSum=-0.829;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:40,23:0.37:63
chr19	20045740	.	G	C	1112.77	.	AC=1;AF=0.500;AN=2;DP=97;set=Intersection	GT:AD:AF:DP	0/1:51,46:0.47:97
chr19	20117685	rs2075090	G	A	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	0/1:190,234:0.55:424
chr19	20150075	rs2286920	A	G	2061.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:164,110:0.40:274
chr19	20150125	rs2286921	T	C	3901.77	.	AC=1;AF=0.500;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	0/1:282,202:0.42:484
chr19	20150175	rs2286922	G	C	20583.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,599:1.00:599
chr19	20150247	rs2286923	A	C	2603.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:216,136:0.39:352
chr19	20150380	rs2335896	T	C	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:33,27:0.45:60
chr19	20295146	rs1097510	G	A	3960.77	.	AC=1;AF=0.500;AN=2;DB;DP=636;set=Intersection	GT:AD:AF:DP	0/1:406,218:0.35:624
chr19	20296738	rs836897	C	G	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:95,92:0.49:187
chr19	20297019	rs149807694	T	TTTTA	1349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.379;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=10.048;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=4.768;SOR=0.072;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr19	20369503	rs8103002	C	G	5080.77	.	AC=1;AF=0.500;AN=2;DB;DP=669;set=Intersection	GT:AD:AF:DP	0/1:411,257:0.38:668
chr19	20414254	rs10425483	A	G	3178.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:243,164:0.40:407
chr19	20415575	rs73000781	C	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:41,32:0.44:73
chr19	20727932	rs33926	G	A	9117.77	.	AC=1;AF=0.500;AN=2;DB;DP=1141;set=Intersection	GT:AD:AF:DP	0/1:671,465:0.41:1136
chr19	20735138	.	G	GA	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=3.606;QD=0.63;ReadPosRankSum=0.215;SOR=0.414;set=HC	GT:AD:AF:DP	0/1:105,29:0.22:134
chr19	20735166	rs2562638	A	T	2499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=2.739;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.797;QD=8.45;ReadPosRankSum=2.343;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:170,126:0.43:296
chr19	20736677	rs2562632	A	G	8205.77	.	AC=1;AF=0.500;AN=2;DB;DP=972;set=Intersection	GT:AD:AF:DP	0/1:548,417:0.43:965
chr19	20748522	rs12979592	C	A	11779.77	.	AC=1;AF=0.500;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	0/1:448,546:0.55:994
chr19	20806770	rs34554673	T	TCA	3353.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:53,84:0.61:137
chr19	20806824	rs10409289	T	C	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:70,90:0.56:160
chr19	20808149	rs1991528	A	G	6205.77	.	AC=1;AF=0.500;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	0/1:225,279:0.55:504
chr19	20808515	rs1968385	T	A	2866.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:87,124:0.59:211
chr19	20844340	rs3217340	G	GAAGT	28022.73	.	AC=2;AF=1.00;AN=2;DB;DP=639;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr19	20973551	.	T	TA	4325.73	.	AC=1;AF=0.500;AN=2;DP=305;set=Intersection	GT:AD:AF:DP	0/1:180,119:0.40:299
chr19	20973560	rs377604472	GAAA	G,GAAAA	7274.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=277;set=Intersection	GT:AF:DP	1/2:0.61,0.34:244
chr19	20973570	rs114136404	G	A	2206.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:154,94:0.38:248
chr19	20976654	rs10413187	C	A	6793.77	.	AC=1;AF=0.500;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	0/1:376,336:0.47:712
chr19	20976742	rs1808542	A	G	13066.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chr19	20976792	rs112261769	CT	C	2829.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:131,96:0.42:227
chr19	20976807	.	T	TTTTTTTG	1284.73	.	AC=1;AF=0.500;AN=2;DP=175;set=Intersection	GT:AD:AF:DP	0/1:66,41:0.38:107
chr19	20988637	rs6511163	G	A	5446.77	.	AC=1;AF=0.500;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	0/1:168,246:0.59:414
chr19	20988712	rs366949	G	A	5629.77	.	AC=1;AF=0.500;AN=2;DB;DP=750;set=Intersection	GT:AD:AF:DP	0/1:454,294:0.39:748
chr19	20988924	rs432839	G	T	4551.77	.	AC=1;AF=0.500;AN=2;DB;DP=553;set=Intersection	GT:AD:AF:DP	0/1:327,220:0.40:547
chr19	20988968	rs383038	T	C	4963.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:295,244:0.45:539
chr19	21106262	rs115179708	G	T	7821.77	.	AC=1;AF=0.500;AN=2;DB;DP=1030;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:615,412:0.40:1027
chr19	21106322	rs73003496	C	T	5300.77	.	AC=1;AF=0.500;AN=2;DB;DP=656;set=Intersection	GT:AD:AF:DP	0/1:385,267:0.41:652
chr19	21125373	rs11669186	T	A	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	21125401	rs11669193	T	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	21125412	rs11669194	T	C	241.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr19	21125524	rs11672995	A	G	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-1.286;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:122,96:0.44:218
chr19	21129039	rs55721150	T	A	383.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.72;ReadPosRankSum=-0.698;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,21:0.48:44
chr19	21129230	rs11085409	G	C	1150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.236;QD=12.24;ReadPosRankSum=-0.925;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:56,38:0.40:94
chr19	21129244	rs202002566	T	TG	895.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.989;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.316;QD=12.98;ReadPosRankSum=0.384;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:43,26:0.38:69
chr19	21129245	.	T	TCTTG	904.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=2.345;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.71;ReadPosRankSum=0.660;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:42,24:0.36:66
chr19	21129326	rs143643694	TGTCA	T	241.73	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,8:0.30:27
chr19	21131571	rs56321708	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:97,40:0.29:137
chr19	21131664	rs56231962	G	T	2044.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:210,113:0.35:323
chr19	21131850	rs56393308	C	G	4191.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:164,116:0.41:280
chr19	21131870	rs11665978	G	C	4714.77	.	AC=1;AF=0.500;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	0/1:181,143:0.44:324
chr19	21132129	rs11670246	T	C	6964.77	.	AC=1;AF=0.500;AN=2;DB;DP=826;set=Intersection	GT:AD:AF:DP	0/1:481,343:0.42:824
chr19	21132211	rs11665995	A	T	6511.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:491,335:0.41:826
chr19	21132394	rs11666887	C	T	6113.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:438,312:0.42:750
chr19	21132751	rs56207286	A	T	5767.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:333,272:0.45:605
chr19	21133129	rs56137123	T	C	1149.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:94,55:0.37:149
chr19	21133225	rs59182323	TATAAAA	T	268.73	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,8:0.44:18
chr19	21133243	rs56339351	G	A	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chr19	21133269	.	C	A	22	.	AC=1;AF=0.500;AN=2;BRF=0.08;FR=0.5000;HP=1;HapScore=2;MGOF=40;MMLQ=28;MQ=60.0;NF=0;NR=3;PP=22;QD=18.9237375157;SC=AATGTGAAGACTATGGCAAAG;SbPval=1.0;Source=Platypus;TC=8;TCF=0;TCR=8;TR=3;WE=21133277;WS=21133259;set=Platypus	GT:AD:AF:DP	1/0:5,3:0.38:8
chr19	21203552	rs2081054	C	T	24153.77	.	AC=2;AF=1.00;AN=2;DB;DP=878;set=Intersection	GT:AD:AF:DP	1/1:0,876:1.00:876
chr19	21205531	rs7252588	C	T	2133.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:66,95:0.59:161
chr19	21216536	rs3760839	G	A	2698.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	21217211	rs1470020	A	G	991.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	21281765	rs34494287	T	TA	2895.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=462;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=0.000;QD=8.27;ReadPosRankSum=3.556;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:149,201:0.57:350
chr19	21299774	rs36125838	T	TATA	22503.73	.	AC=2;AF=1.00;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	1/1:0,501:1.00:501
chr19	21300462	rs2884554	A	G	23466.77	.	AC=2;AF=1.00;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	1/1:0,869:1.00:869
chr19	21326358	rs17445374	A	G	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:163,246:0.60:409
chr19	21349311	rs7256576	C	T	11284.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	21350520	rs113788883	TA	T	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.449;ClippingRankSum=0.000;DB;DP=1150;ExcessHet=3.0103;FS=0.717;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=4.531;QD=0.17;ReadPosRankSum=-1.148;SOR=0.642;set=HC	GT:AD:AF:DP	0/1:829,167:0.17:996
chr19	21476107	rs62620702	T	C	5338.77	.	AC=1;AF=0.500;AN=2;DB;DP=771;set=Intersection	GT:AD:AF:DP	0/1:476,292:0.38:768
chr19	21477379	rs504280	C	T	8078.77	.	AC=1;AF=0.500;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	0/1:261,369:0.59:630
chr19	21477431	rs1781873	T	C	4550.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:316,228:0.42:544
chr19	21491951	rs685844	T	A	6149.77	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:198,268:0.58:466
chr19	21492062	rs547516	G	A	40260.77	.	AC=2;AF=1.00;AN=2;DB;DP=1552;set=Intersection	GT:AD:AF:DP	1/1:0,1549:1.00:1549
chr19	21493246	.	C	CA	535	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=11;HapScore=1;MGOF=9;MMLQ=26;MQ=59.31;NF=44;NR=4;PP=535;QD=11.3333333333;SC=AACTCTGTCTCAAAAAAAAAA;SbPval=0.72;Source=Platypus;TC=126;TCF=113;TCR=13;TR=48;WE=21493266;WS=21493235;set=Platypus	GT:AD:AF:DP	1/1:78,48:0.38:126
chr19	21493258	rs669560	T	A	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.74;ReadPosRankSum=-0.455;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:17,71:0.81:88
chr19	21493278	.	T	TA	130.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;ClippingRankSum=0.000;DP=218;ExcessHet=3.0103;FS=11.357;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=0.000;QD=0.64;ReadPosRankSum=-1.390;SOR=2.138;set=HC	GT:AD:AF:DP	0/1:163,42:0.20:205
chr19	21541806	rs2012013	T	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:156,115:0.42:271
chr19	21544503	rs12981775	C	T	1784.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:111,85:0.43:196
chr19	21544514	rs12981564	A	G	2278.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:129,110:0.46:239
chr19	21544571	rs1142653	G	A	3230.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:221,166:0.43:387
chr19	21544714	rs12982282	C	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;MQ=59.97;set=Intersection	GT:AD:AF:DP	0/1:85,63:0.43:148
chr19	21558031	.	G	GTGTT	2989	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=6;HapScore=1;MGOF=15;MMLQ=28;MQ=59.99;NF=153;NR=213;PP=2989;QD=20;SC=GTGTGTGTGTGTTTTTCAGGG;SbPval=0.19;Source=Platypus;TC=548;TCF=193;TCR=355;TR=366;WE=21558039;WS=21558020;set=Platypus	GT:AD:AF:DP	1/0:182,366:0.67:548
chr19	21558311	rs2914645	C	T	1706.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	21558818	rs376940300	CA	C	516.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=6.693;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=0.053;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:259,82:0.24:341
chr19	21560141	rs1875256	G	A	1951.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	21560314	rs112058265	G	GCACA	5278.73	.	AC=1;AF=0.500;AN=2;DB;DP=427;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:190,157:0.45:347
chr19	21561508	rs145776873	TCTC	T	1348.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:14,34:0.71:48
chr19	21580012	rs62110379	T	G	10690.77	.	AC=1;AF=0.500;AN=2;DB;DP=883;set=Intersection	GT:AD:AF:DP	0/1:366,514:0.58:880
chr19	21587918	rs7254059	G	T	10132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.295;ClippingRankSum=0.000;DB;DP=1016;ExcessHet=3.0103;FS=1.118;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-2.627;QD=10.01;ReadPosRankSum=-0.233;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:511,501:0.50:1012
chr19	21588165	rs2650847	G	A	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:114,55:0.33:169
chr19	21588692	rs1055753	T	C	1652.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=4.820;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.62;ReadPosRankSum=-1.201;SOR=0.442;set=HC	GT:AD:AF:DP	0/1:126,91:0.42:217
chr19	21606429	rs4621113	G	T	3803.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:326,190:0.37:516
chr19	21607252	rs142288436	TA	AG	8359.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.555;ClippingRankSum=0.000;DB;DP=1098;ExcessHet=3.0103;FS=1.964;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-12.041;QD=7.66;ReadPosRankSum=5.627;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:780,311:0.29:1091
chr19	21607296	.	G	A	5347.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.973;ClippingRankSum=0.000;DP=1050;ExcessHet=3.0103;FS=4.606;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-16.237;QD=5.13;ReadPosRankSum=-8.329;SOR=1.062;set=HC	GT:AD:AF:DP	0/1:861,182:0.17:1043
chr19	21607305	.	T	C	3401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.769;ClippingRankSum=0.000;DP=1030;ExcessHet=3.0103;FS=5.111;MLEAC=1;MLEAF=0.500;MQ=59.42;MQRankSum=-18.010;QD=3.32;ReadPosRankSum=-9.203;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:884,140:0.14:1024
chr19	21607321	.	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.901;ClippingRankSum=0.000;DP=959;ExcessHet=3.0103;FS=6.843;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-23.119;QD=0.22;ReadPosRankSum=-7.908;SOR=1.810;set=HC	GT:AD:AF:DP	0/1:899,54:0.06:953
chr19	21607878	rs34723025	ATAAT	A	11188.73	.	AC=1;AF=0.500;AN=2;DB;DP=511;set=Intersection	GT:AD:AF:DP	0/1:213,285:0.57:498
chr19	21688495	rs73017722	C	T	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:319,212:0.40:531
chr19	21688602	rs10420016	C	G	35089.77	.	AC=2;AF=1.00;AN=2;DB;DP=1381;set=Intersection	GT:AD:AF:DP	1/1:0,1338:1.00:1338
chr19	21712415	rs35176838	T	TTC	12635.73	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:292,395:0.57:687
chr19	21719401	rs35782355	T	C	1828.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:133,84:0.39:217
chr19	21720803	rs2562473	C	T	3975.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:105,175:0.62:280
chr19	21736788	rs2562502	T	C	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	21838002	rs7351091	G	T	3724.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.76;QD=26.42;SOR=0.926;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	21838113	rs34320073	A	AGAT	4835.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	21838146	rs7351088	C	T	4563.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=44.74;SOR=0.732;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	21838146	.	CA	TG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=2;HapScore=1;MGOF=38;MMLQ=28;MQ=60.61;NF=39;NR=43;PP=2947;QD=20;SC=TGATAACTACCAAGAGCAATA;SbPval=0.57;Source=Platypus;TC=83;TCF=40;TCR=43;TR=82;WE=21838155;WS=21838136;set=Platypus	GT:AD:AF:DP	1/1:1,82:0.99:83
chr19	21838147	rs7351087	A	G	4563.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=44.31;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	21838240	rs6511279	C	A	3695.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	21838351	rs7508059	A	G	10668.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr19	21838492	rs6511280	C	G	13365.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr19	21838565	rs6511281	T	C	28070.77	.	AC=2;AF=1.00;AN=2;DB;DP=1064;set=Intersection	GT:AD:AF:DP	1/1:0,1062:1.00:1062
chr19	21838657	rs7508494	G	A	30667.77	.	AC=2;AF=1.00;AN=2;DB;DP=1147;set=Intersection	GT:AD:AF:DP	1/1:0,1142:1.00:1142
chr19	21838785	rs10422946	C	T	20685.77	.	AC=2;AF=1.00;AN=2;DB;DP=763;set=Intersection	GT:AD:AF:DP	1/1:0,759:1.00:759
chr19	21838830	rs10422804	A	C	22848.77	.	AC=2;AF=1.00;AN=2;DB;DP=866;set=Intersection	GT:AD:AF:DP	1/1:2,862:1.00:864
chr19	21909948	rs7246400	G	A	9447.77	.	AC=1;AF=0.500;AN=2;DB;DP=745;set=Intersection	GT:AD:AF:DP	0/1:325,417:0.56:742
chr19	21948748	rs11085493	T	C	3148.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	21950337	rs10412066	G	C	7412.77	.	AC=1;AF=0.500;AN=2;DB;DP=936;set=Intersection	GT:AD:AF:DP	0/1:553,380:0.41:933
chr19	21950402	rs6511291	T	C	5591.77	.	AC=1;AF=0.500;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	0/1:209,253:0.55:462
chr19	22115982	rs807958	A	G	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.94;QD=41.18;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	22115990	rs807957	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.21;QD=43.58;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	22116050	rs140860406	C	CA	255.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.047;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=1.412;MLEAC=1;MLEAF=0.500;MQ=54.62;MQRankSum=-1.304;QD=6.73;ReadPosRankSum=0.495;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	22153495	rs2359812	A	T	9126.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	22154954	rs2214301	C	T	13831.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr19	22157302	rs10419899	G	A	21054.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:0,781:1.00:781
chr19	22171880	rs4574045	C	T	2415.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.37;SOR=4.671;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	22193451	rs2040654	C	G	10707.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,413:1.00:413
chr19	22235307	rs415291	C	G	9650.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	22235491	rs387343	T	G	24363.77	.	AC=2;AF=1.00;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	1/1:0,936:1.00:936
chr19	22235526	rs387315	T	C	18236.77	.	AC=2;AF=1.00;AN=2;DB;DP=708;set=Intersection	GT:AD:AF:DP	1/1:0,707:1.00:707
chr19	22235577	rs408312	C	T	8821.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr19	22235620	rs423926	G	C	4575.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	22363826	rs7252593	G	C	6772.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.373;ClippingRankSum=0.000;DB;DP=1332;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-3.278;QD=5.14;ReadPosRankSum=-5.924;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:1036,281:0.21:1317
chr19	22363844	rs7252604	G	A	2148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.255;ClippingRankSum=0.000;DB;DP=1275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.23;MQRankSum=-6.975;QD=1.69;ReadPosRankSum=-12.566;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:1094,174:0.14:1268
chr19	22363861	rs7253392	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.593;ClippingRankSum=0.000;DB;DP=1166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.29;MQRankSum=-12.203;QD=0.08;ReadPosRankSum=-11.768;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:1090,72:0.06:1162
chr19	22364233	rs12986319	C	T	3070.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:228,159:0.41:387
chr19	22469233	rs808373	G	C	12375.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr19	22585517	rs35315232	A	C	14045.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	22585521	.	CTT	C,CT	4674.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.379;ClippingRankSum=0.000;DP=375;ExcessHet=3.0103;FS=1.348;MLEAC=1,1;MLEAF=0.500,0.500;MQ=50.85;MQRankSum=-8.891;QD=13.43;ReadPosRankSum=1.384;SOR=0.873;set=HC	GT:AD:AF:DP	1/2:45,76,227:0.22,0.65:348
chr19	22586073	rs56768795	C	A	5063.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=45.21;SOR=3.952;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	22586074	.	A	AC	662.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=10.04;ReadPosRankSum=0.208;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:14,52:0.79:66
chr19	22586075	.	A	AC	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=4.107;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.667;SOR=0.287;set=HC	GT:AD:AF:DP	0/1:52,14:0.21:66
chr19	22586084	rs113181884	A	C	6142.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.57;QD=37.69;SOR=6.518;set=HC	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	22586192	rs1368476	A	G	11713.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr19	22605103	rs11669353	G	C	16925.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,653:1.00:653
chr19	22605120	rs11669356	G	T	14090.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr19	22782955	rs3214614	CT	C	320.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:24,22:0.48:46
chr19	22784679	rs115581662	G	A	632.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	22784843	rs11670104	T	G	7972.77	.	AC=1;AF=0.500;AN=2;DB;DP=770;set=Intersection	GT:AD:AF:DP	0/1:380,390:0.51:770
chr19	22785134	rs11670207	T	C	7105.77	.	AC=1;AF=0.500;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	0/1:256,343:0.57:599
chr19	22785453	rs60588450	G	A	5742.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:193,257:0.57:450
chr19	22786020	rs2304141	G	T	3089.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:135,136:0.50:271
chr19	22786126	rs2304143	T	A	9301.77	.	AC=1;AF=0.500;AN=2;DB;DP=815;set=Intersection	GT:AD:AF:DP	0/1:369,440:0.54:809
chr19	22786284	rs141668737	G	GC	6473.73	.	AC=1;AF=0.500;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	0/1:265,273:0.51:538
chr19	22836873	rs61144086	G	GA	2184.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217;ClippingRankSum=0.000;DB;DP=708;ExcessHet=3.0103;FS=3.576;MLEAC=1;MLEAF=0.500;MQ=58.39;MQRankSum=-14.555;QD=3.83;ReadPosRankSum=-0.252;SOR=0.969;set=HC	GT:AD:AF:DP	0/1:383,187:0.33:570
chr19	22846788	rs11672238	C	A	2580.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:229,133:0.37:362
chr19	22869486	rs71357917	C	T	4700.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:198,220:0.53:418
chr19	22937148	rs4933033	G	A	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=8.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.30;ReadPosRankSum=0.000;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:15,14:0.48:29
chr19	22939224	rs17172927	G	A	6408.77	.	AC=1;AF=0.500;AN=2;DB;DP=781;set=Intersection	GT:AD:AF:DP	0/1:454,324:0.42:778
chr19	22941191	rs11667397	T	A	4206.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:312,210:0.40:522
chr19	22942325	rs7255780	G	C	1290.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:162,76:0.32:238
chr19	22952249	rs11669602	C	T	1591.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:86,70:0.45:156
chr19	22952946	rs12980509	T	C	718.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:33,34:0.51:67
chr19	23159486	rs289318	T	C	6507.77	.	AC=1;AF=0.500;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	0/1:531,335:0.39:866
chr19	23169954	rs289302	G	A	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:144,123:0.46:267
chr19	23328940	rs7247102	G	A	8824.77	.	AC=1;AF=0.500;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	0/1:248,389:0.61:637
chr19	23406165	rs2885604	T	C	10045.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr19	23406801	rs8110795	G	C	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:97,76:0.44:173
chr19	23413937	rs7256859	A	G	10607.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr19	23414167	rs4932841	T	G	9256.77	.	AC=1;AF=0.500;AN=2;DB;DP=819;set=Intersection	GT:AD:AF:DP	0/1:383,433:0.53:816
chr19	23433107	rs10405424	G	C	8551.77	.	AC=1;AF=0.500;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	0/1:266,385:0.59:651
chr19	23542290	rs428549	AG	GC	4781.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;JOINED;set=Intersection	GT:AD:AF:DP	0/1:158,129:0.45:287
chr19	23542697	rs1821845	G	C	9712.77	.	AC=1;AF=0.500;AN=2;DB;DP=766;set=Intersection	GT:AD:AF:DP	0/1:331,427:0.56:758
chr19	23543834	rs7255296	C	T	7468.77	.	AC=1;AF=0.500;AN=2;DB;DP=907;set=Intersection	GT:AD:AF:DP	0/1:530,374:0.41:904
chr19	23543873	rs141572875	G	A	9470.77	.	AC=1;AF=0.500;AN=2;DB;DP=974;set=Intersection	GT:AD:AF:DP	0/1:513,457:0.47:970
chr19	23545004	rs296092	G	A	6644.77	.	AC=1;AF=0.500;AN=2;DB;DP=893;set=Intersection	GT:AD:AF:DP	0/1:546,341:0.38:887
chr19	23545530	.	G	GA	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298;ClippingRankSum=0.000;DP=268;ExcessHet=3.0103;FS=1.474;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=3.152;QD=0.49;ReadPosRankSum=-0.846;SOR=0.556;set=HC	GT:AD:AF:DP	0/1:186,36:0.16:222
chr19	23837365	rs4380159	A	C	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr19	23845038	rs10418600	T	G	4773.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.915;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=5.384;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=41.88;ReadPosRankSum=1.507;SOR=1.860;set=HC	GT:AD:AF:DP	1/1:1,113:0.99:114
chr19	23845042	rs10418602	T	C	4541.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.82;SOR=2.184;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	23869684	rs4020520	G	A	4173.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	23869823	rs2364624	T	G	12128.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	23869941	rs2364625	A	G	6063.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	23926332	rs10405811	G	A	523.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	23927252	rs1818990	C	T	14083.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,533:1.00:533
chr19	23927468	rs1818989	A	G	4250.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	23928102	rs7248674	C	G	4422.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	23941459	rs6417220	G	A	6164.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	29567134	rs1549944	T	C	3297.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.438;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:59,148:0.71:207
chr19	29704002	rs11666764	T	C	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.04;QD=45.50;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	29704010	rs8100724	A	C	11158.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=43.25;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr19	30019505	rs35111102	C	T	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr19	30020678	rs35700860	T	C	1101.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:136,63:0.32:199
chr19	30097268	rs2303754	C	G	3734.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.825;set=HC	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	30099457	rs1465585	A	G	4092.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	30102856	rs2288477	A	G	4410.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:95,199:0.68:294
chr19	30102951	rs8103310	G	A	1494.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:210,89:0.30:299
chr19	30103153	rs4804893	A	G	1100.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:22,42:0.66:64
chr19	30106130	rs72228837	CT	C	688.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.062;QD=8.20;ReadPosRankSum=0.448;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:24,60:0.71:84
chr19	30193721	rs10424582	G	A	9454.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr19	30303714	rs3218029	T	TC	4209.73	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:44,158:0.78:202
chr19	30311542	rs34022336	G	GT	542.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.08;ReadPosRankSum=-1.407;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:15,34:0.69:49
chr19	30314459	rs4805483	A	G	786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.432;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.78;ReadPosRankSum=0.362;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:58,58:0.50:116
chr19	30414572	rs3745643	C	G	898.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:76,44:0.37:120
chr19	30414587	rs3745642	G	T	951.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:93,51:0.35:144
chr19	30433618	rs117820971	C	T	445.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.476;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:87,28:0.24:115
chr19	30433668	rs1990903	C	T	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:16,44:0.73:60
chr19	30500118	rs3840928	GTGA	G	8817.73	.	AC=1;AF=0.500;AN=2;DB;DP=739;set=Intersection	GT:AD:AF:DP	0/1:203,420:0.67:623
chr19	30500143	.	TGAC	T	2990	.	AC=1;AF=0.500;AN=2;BRF=0.22;FR=0.5000;HP=1;HapScore=1;MGOF=9;MMLQ=23;MQ=60.41;NF=41;NR=210;PP=2990;QD=20;SC=ATGATGATGATGACGACGACG;SbPval=0.8;Source=Platypus;TC=519;TCF=104;TCR=415;TR=251;WE=30500153;WS=30500130;set=Platypus	GT:AD:AF:DP	1/0:268,251:0.48:519
chr19	30503162	rs16963628	G	A	545.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.805;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=0.563;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:95,33:0.26:128
chr19	30505697	rs75312381	T	C	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:10,27:0.73:37
chr19	31038995	rs1469705	T	C	8157.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr19	31039256	rs111707808	C	T	2192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.858;ClippingRankSum=0.000;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.718;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:312,131:0.30:443
chr19	31039669	rs77238711	C	T	1057.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.146;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=3.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.21;ReadPosRankSum=-0.366;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:188,63:0.25:251
chr19	31048232	rs12489	G	A	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:17,25:0.60:42
chr19	31769763	rs12461253	G	A	1759.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:198,94:0.32:292
chr19	31840190	rs71173962	AG	A	2447.73	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	31930388	rs8103449	A	T	2435.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	31930590	.	AGAG	A	1226.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.498;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr19	31930594	.	A	AT	1226.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.544;ClippingRankSum=0.000;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=0.675;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:95,38:0.29:133
chr19	32083696	rs7245697	T	C	13114.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr19	32102190	rs150081063	CA	C	1365.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr19	32873698	rs2270399	A	G	3572.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:65,157:0.71:222
chr19	32930069	rs6510249	G	A	4947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.533;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.953;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.51;ReadPosRankSum=0.817;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:88,231:0.72:319
chr19	32954725	rs1544511	G	A	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:20,69:0.78:89
chr19	32955406	rs7252536	A	T	122.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chr19	33072069	rs10402931	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	33072085	rs10405535	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	33072118	rs11084660	C	G	332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.16;ReadPosRankSum=0.993;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:34,20:0.37:54
chr19	33072266	rs10411464	T	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	33076973	rs10500262	T	A	3700.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	33098632	rs2302970	G	C	3436.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	33098870	rs2903755	C	T	5086.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=1.837;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	33098875	rs2868150	T	C	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.96;SOR=1.992;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	33106390	rs614370	T	G	1365.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.39;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	33106621	rs405858	C	T	9043.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	33110149	rs28615461	T	C	1257.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	33110204	rs2287669	T	C	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.97;SOR=1.188;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	33117666	rs6510271	T	C	6547.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	33117842	rs6510272	C	A	5510.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	33117884	rs6510273	T	C	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	33119883	rs6510274	A	G	1702.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	33130496	rs11084666	T	C	1548.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	33131112	rs3760943	G	A	2857.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:2,97:0.98:99
chr19	33131336	rs10416829	T	C	15637.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr19	33133936	rs3841621	CG	C	1740.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	33134425	rs259229	G	A	5922.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	33134635	rs259228	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	33135458	rs259225	C	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	33137629	rs259220	T	A	3166.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	33149768	rs259251	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	33150043	rs199904012	TTC	T	288.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.274;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.129;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-0.175;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:29,30:0.51:59
chr19	33167455	rs259290	G	T	2482.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	33167879	rs259291	G	A	1693.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	33291456	rs117792586	A	G	71.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.851;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=2.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.05;ReadPosRankSum=-0.709;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:28,7:0.20:35
chr19	33308875	.	C	CA	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DP=226;ExcessHet=3.0103;FS=1.589;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.804;QD=0.80;ReadPosRankSum=0.081;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:163,44:0.21:207
chr19	33321717	rs3214460	A	G	2794.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	33349488	rs2287879	T	C	2266.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	33351136	rs149966208	C	T	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	33351376	rs5827823	C	CA	403.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=5.299;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.24;ReadPosRankSum=0.392;SOR=0.135;set=HC	GT:AD:AF:DP	0/1:16,33:0.67:49
chr19	33390796	rs10418340	G	A	12542.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr19	33406442	rs7246178	A	G	3806.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr19	33406484	rs7260149	G	T	3556.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.34;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr19	33406493	rs35219657	G	C	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.88;SOR=2.365;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	33406549	rs7246326	A	G	936.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	33409048	rs59487918	GC	G	1038.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	33409054	rs2278402	G	A	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=43.66;SOR=3.442;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	33409061	rs2278403	G	C	1121.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.40;QD=41.55;SOR=3.180;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	33409413	rs2278404	G	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	33414420	rs4805825	A	G	14122.77	.	AC=2;AF=1.00;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr19	33418037	rs141452719	CCCAT	C	1188.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	33428423	rs2304100	G	T	293.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	33430816	rs12461782	T	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.44;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	33439158	rs12710001	T	C	610.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	33444453	rs75223967	T	G	8852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.136;QD=20.21;ReadPosRankSum=0.407;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:171,267:0.61:438
chr19	33444456	rs2944021	A	G	2900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771;ClippingRankSum=0.000;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.842;QD=6.39;ReadPosRankSum=2.758;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:285,169:0.37:454
chr19	33444511	rs80283382	T	C	6887.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.35;ReadPosRankSum=-0.978;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:281,326:0.54:607
chr19	33444556	rs73579706	T	C	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:292,193:0.40:485
chr19	33444576	rs74504201	C	T	2012.77	.	AC=1;AF=0.500;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	0/1:295,131:0.31:426
chr19	33444588	rs73035551	T	G	1362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=50.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-10.990;SOR=2.360;set=HC	GT:AD:AF:DP	0/1:265,98:0.27:363
chr19	33444707	rs10411735	C	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.08;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	33444773	rs34154748	CTT	C	300.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=18.80;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:4,12:0.75:16
chr19	33462564	rs34358164	TA	T	3405.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.177;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=2.233;QD=9.65;ReadPosRankSum=-0.109;SOR=0.879;set=HC	GT:AD:AF:DP	0/1:81,272:0.77:353
chr19	33462938	rs751732	C	T	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	33467357	rs2304102	G	A	4027.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	33467620	rs7247715	T	C	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	33486810	rs4805026	A	G	3931.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	33490480	rs74603434	G	A	227.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.810;MLEAC=1;MLEAF=0.500;MQ=58.28;MQRankSum=-8.614;QD=3.00;ReadPosRankSum=-1.772;SOR=1.227;set=HC	GT:AD:AF:DP	0/1:65,11:0.14:76
chr19	33490487	.	C	T	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;ClippingRankSum=0.000;DP=78;ExcessHet=3.0103;FS=4.568;MLEAC=1;MLEAF=0.500;MQ=57.92;MQRankSum=-7.843;QD=3.18;ReadPosRankSum=-0.389;SOR=1.418;set=HC	GT:AD:AF:DP	0/1:66,12:0.15:78
chr19	33490585	rs78615454	G	A	316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.38;MQRankSum=-7.119;QD=1.82;ReadPosRankSum=1.277;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:139,35:0.20:174
chr19	33512632	rs34594918	CA	C	6720.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=997;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=1.869;QD=6.96;ReadPosRankSum=-0.941;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:704,261:0.27:965
chr19	33517515	rs28626308	C	T	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=1.206;MLEAC=1;MLEAF=0.500;MQ=59.54;MQRankSum=0.457;QD=3.47;ReadPosRankSum=-0.111;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:171,56:0.25:227
chr19	33572089	rs28372855	G	C	456.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:20,22:0.52:42
chr19	33579018	.	CTT	C	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.460;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-2.093;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	33579128	rs7259333	T	C	3688.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.09;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	33584176	rs35647730	C	CT	719.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:4,40:0.91:44
chr19	33584479	rs12460195	G	A	5261.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	33584491	rs12460349	C	T	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=-1.053;SOR=0.677;set=HC	GT:AD:AF:DP	0/1:121,30:0.20:151
chr19	33585219	rs58636263	CT	C	1152.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.667;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=3.042;MLEAC=2;MLEAF=1.000;MQ=60.27;MQRankSum=0.717;QD=13.25;ReadPosRankSum=0.838;SOR=0.277;set=HC	GT:AD:AF:DP	1/1:10,77:0.89:87
chr19	33586739	rs13345542	G	C	8511.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr19	33588775	rs142991180	T	C	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:31,63:0.67:94
chr19	33592301	rs10410778	C	A	706.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	33597816	rs10408093	T	C	5435.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	33597930	rs3760893	C	A	804.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	33600764	rs2287679	T	C	7173.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr19	33602757	rs10420258	C	T	4215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.476;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-1.240;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:84,196:0.70:280
chr19	33602856	rs3786934	A	G	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=0.056;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:96,39:0.29:135
chr19	33602881	rs3786933	C	T	2297.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	33603288	rs3837972	AC	A	1592.73	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:12,56:0.82:68
chr19	33604531	rs8103733	C	T	285.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:22,12:0.35:34
chr19	33605300	rs10416265	A	G	9058.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr19	33605312	rs10421769	T	C	8376.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr19	33608733	rs2287681	C	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:13,27:0.68:40
chr19	33609082	rs35859593	A	AT	87.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=2.550;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	33610060	rs8113398	A	G	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chr19	33617583	rs6510356	C	T	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:175,70:0.29:245
chr19	33620855	rs59303077	G	GA	327.90	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=4.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.71;ReadPosRankSum=-0.293;SOR=1.315;set=HC	GT:AD:AF:DP	0/1:5,23:0.82:28
chr19	33620897	rs3826906	G	A	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:14,27:0.66:41
chr19	33620993	rs35506888	T	TCC	7632.73	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr19	33628438	rs10402746	C	T	355.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr19	33635761	rs3848596	C	T	3312.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:58,149:0.72:207
chr19	33635853	rs3848597	G	A	3428.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:52,98:0.65:150
chr19	33635877	rs3848598	T	C	2978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.13;ReadPosRankSum=0.655;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:39,75:0.66:114
chr19	33635887	rs3848599	T	G	4157.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.37;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	33635991	rs10410058	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:17,24:0.59:41
chr19	33636010	rs10411610	C	T	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.444;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=3.093;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.54;ReadPosRankSum=-0.914;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,28:0.70:40
chr19	33642273	rs12327849	A	C	2776.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	33647379	rs11881580	T	C	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.593;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.142;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.53;ReadPosRankSum=0.113;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:106,53:0.33:159
chr19	33651233	rs3909410	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:111,50:0.31:161
chr19	33663189	rs10422125	T	G	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:21,52:0.71:73
chr19	33665038	rs79215236	G	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:120,48:0.29:168
chr19	33665188	rs4805855	C	G	1153.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:100,63:0.39:163
chr19	33665205	rs4805856	A	G	773.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:80,43:0.35:123
chr19	33666154	rs200092325	A	AAAACAAAC	779.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.14;MQRankSum=4.686;QD=11.30;ReadPosRankSum=-1.510;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:49,20:0.29:69
chr19	33685836	rs60145560	T	C	728.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chr19	33695830	rs11666900	G	A	1740.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:39,68:0.64:107
chr19	33696708	rs2112800	T	C	4629.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:115,210:0.65:325
chr19	33698291	rs3745974	T	C	4623.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:75,194:0.72:269
chr19	33698655	rs376080905	C	CGG	1157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=1.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.44;ReadPosRankSum=2.298;SOR=0.320;set=HC	GT:AD:AF:DP	0/1:23,31:0.57:54
chr19	33699664	rs57394649	T	TA	1013.73	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:29,44:0.60:73
chr19	33700445	rs2303093	C	T	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:47,70:0.60:117
chr19	33703103	rs11669156	C	T	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:63,91:0.59:154
chr19	33703706	rs11673535	A	G	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:13,28:0.68:41
chr19	33792631	rs34529039	C	A	783.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:78,34:0.30:112
chr19	33882222	rs17569	G	A	8243.77	.	AC=1;AF=0.500;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	0/1:143,377:0.72:520
chr19	33953831	rs75449530	T	C	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	34288176	.	TGTGTGTGTGTGTGC	T	32.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.187;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=4.462;MLEAC=1;MLEAF=0.500;MQ=62.71;MQRankSum=-1.315;QD=0.44;ReadPosRankSum=1.322;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:65,9:0.12:74
chr19	34288178	.	TGTGTGTGTGTGC	T	790.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.024;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=8.478;MLEAC=1;MLEAF=0.500;MQ=62.71;MQRankSum=3.072;QD=10.54;ReadPosRankSum=1.707;SOR=1.925;set=HC	GT:AD:AF:DP	0/1:39,36:0.48:75
chr19	34288202	rs1139231	C	T	2648.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr19	34302673	.	C	CT	525.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.360;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:127,59:0.32:186
chr19	34304260	rs60235724	A	AT	2883.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	34513913	rs10418860	C	T	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:143,75:0.34:218
chr19	34584137	rs574004	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,103:0.72:144
chr19	34706440	rs57270694	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:76,38:0.33:114
chr19	34710532	rs2297521	A	G	313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-1.018;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chr19	34710807	rs2599557	A	C	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,17:0.30:56
chr19	34712654	rs536367	C	T	401.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.070;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=1.722;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:100,31:0.24:131
chr19	34712736	rs537252	T	C	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr19	34717280	.	CT	C	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.89;ReadPosRankSum=1.393;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	34824582	rs35956890	G	GT	314.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.949;QD=4.63;ReadPosRankSum=0.017;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:38,30:0.44:68
chr19	34872355	.	G	GT	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.925;ClippingRankSum=0.000;DP=358;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=0.458;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:275,67:0.20:342
chr19	34885006	rs8108038	A	G	5648.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	34890322	rs2301263	G	A	2568.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	34904539	rs9653103	C	G	646.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	34922865	rs3217243	T	TGTATAAA	2619.73	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	34942872	rs2161472	A	T	1078.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.250;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.10;ReadPosRankSum=0.420;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:24,43:0.64:67
chr19	34954873	rs10412944	C	G	438.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	34959812	rs7258977	A	G	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	34959979	rs7259160	A	G	2174.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	34971763	rs7257588	T	C	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr19	34971846	rs4344866	C	T	9306.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	34971998	rs7248705	G	A	6097.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr19	34972146	rs7248847	G	C	9319.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr19	34972892	rs12609305	A	C	400.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.57;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	34973413	rs1465433	T	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	34973476	rs8107479	G	A	700.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	34981505	rs4321301	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	34985466	rs11671685	C	T	3429.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	34986767	rs35126035	A	C	4407.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.38;SOR=2.258;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	34986776	rs35570240	G	A	4118.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.29;SOR=2.380;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	35036089	rs7259820	G	A	2065.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	35174227	rs66509108	G	A	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	35175592	rs10425561	G	A	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	35175749	rs10401309	C	G	9998.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	35233027	rs10426376	C	T	273.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	35487125	rs67018685	G	A	5920.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:140,276:0.66:416
chr19	35491326	rs3072398	A	AGCCCT	1030.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;MQ=61.72;set=Intersection	GT:AD:AF:DP	1/1:2,26:0.93:28
chr19	35500919	rs11084797	T	C	14119.77	.	AC=1;AF=0.500;AN=2;DB;DP=938;set=Intersection	GT:AD:AF:DP	0/1:287,646:0.69:933
chr19	35502352	rs140658050	CCT	C	832.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.053;ClippingRankSum=0.000;DB;DP=943;ExcessHet=3.0103;FS=1.854;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=2.830;QD=0.95;ReadPosRankSum=-0.227;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:768,106:0.12:874
chr19	35504627	rs7251988	C	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,22:0.79:28
chr19	35506622	rs2290648	G	T	713.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:27,33:0.55:60
chr19	35506729	rs2290647	G	A	3216.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:89,152:0.63:241
chr19	35510102	rs2290646	G	C	5697.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:146,262:0.64:408
chr19	35510504	rs68162641	A	G	2326.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:42,95:0.69:137
chr19	35513050	rs66984916	G	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:22,28:0.56:50
chr19	35513746	rs58690566	T	G	1633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.21;ReadPosRankSum=-0.477;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:42,73:0.63:115
chr19	35513896	rs4806072	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.009;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.835;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=0.327;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:161,64:0.28:225
chr19	35514545	rs3761075	A	G	538.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr19	35524824	rs55742440	T	C	7034.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:158,312:0.66:470
chr19	35524939	rs67701503	C	A	11349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.00;ReadPosRankSum=1.766;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:166,288:0.63:454
chr19	35524944	rs67486287	G	C	11254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=0.545;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.41;ReadPosRankSum=2.084;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:161,282:0.64:443
chr19	35530690	rs28365105	C	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:27,58:0.68:85
chr19	35532909	rs68093093	C	T	4663.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:93,202:0.68:295
chr19	35533550	rs11399986	A	AC	3993.73	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr19	35541278	rs12463218	G	A	439.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr19	35541330	rs57035236	TA	T	2267.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	35551225	rs3830343	G	GC	3330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;ClippingRankSum=0.000;DB;DP=573;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.569;QD=6.07;ReadPosRankSum=-0.397;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:391,158:0.29:549
chr19	35556300	rs2305746	A	G	7918.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,292:1.00:292
chr19	35556640	rs1688031	T	C	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:87,63:0.42:150
chr19	35556659	rs1672991	A	G	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	35556744	rs1688030	T	C	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	35557260	rs1042328	T	G	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:68,28:0.29:96
chr19	35577870	rs7250814	G	A	11749.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,438:1.00:438
chr19	35590180	rs1687994	T	A	7693.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr19	35597215	rs10422803	C	A	554.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	35597352	rs2445826	T	C	4358.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	35597462	rs10424084	A	G	17249.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,646:1.00:646
chr19	35597620	rs10423723	C	T	11076.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	35597729	rs7258700	C	T	4423.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	35602014	rs4806085	T	C	11039.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr19	35602338	rs11665663	T	C	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	35602445	rs199877070	TGGG	T	1294.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	35609972	rs10543115	GGAC	G	5357.73	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:72,132:0.65:204
chr19	35609981	rs10426785	C	T	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:78,144:0.65:222
chr19	35610245	rs2278994	A	G	4042.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:83,182:0.69:265
chr19	35612168	rs1688016	T	A	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.817;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	35612286	rs2290650	A	G	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	35613623	rs1688017	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	35614272	.	ATG	A,GTG	8177.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.89;SOR=0.827;set=HC	GT:AD:AF:DP	1/2:0,30,175:0.15,0.85:205
chr19	35614274	rs937089	G	A	5387.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.792;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=2.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.28;ReadPosRankSum=-0.040;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:31,174:0.85:205
chr19	35614336	rs1672974	T	C	7618.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	35615995	rs14358	C	T	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	35616016	rs1048690	G	A	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	35616086	rs11084800	C	T	6836.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	35616220	rs148964366	C	T	1540.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:177,87:0.33:264
chr19	35616315	rs12610146	GC	AT	10562.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	35616464	rs12976269	G	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr19	35616562	rs12978414	C	G	18070.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,668:1.00:668
chr19	35616663	rs1630545	A	G	21807.77	.	AC=2;AF=1.00;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	1/1:1,841:1.00:842
chr19	35616692	rs1672976	C	T	18590.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr19	35616953	rs1632457	T	C	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	35617122	rs937087	A	G	11698.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr19	35617270	rs1319969	T	C	8013.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr19	35617639	rs1687998	C	G	3120.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr19	35622492	rs1688001	C	T	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	35622695	rs1673007	A	G	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.46;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	35632165	rs151269496	TCTGGCCCCGCCTCTCCCTGGCCCCGCCTCTCCCTAGCCCCCCTCTCC	T	7871.73	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	35632634	rs12461849	G	A	5306.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	35633236	rs1687986	G	A	4854.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	35633503	rs1673004	C	G	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	35642651	rs36072726	G	T	1581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.36;ReadPosRankSum=0.821;SOR=0.863;set=HC	GT:AD:AF:DP	0/1:34,69:0.67:103
chr19	35649324	rs1633915	C	G	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:69,128:0.65:197
chr19	35651531	rs1617607	A	G	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:54,64:0.54:118
chr19	35655151	rs1672994	T	C	4125.77	.	AC=1;AF=0.500;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	0/1:76,170:0.69:246
chr19	35657351	rs8106303	A	C	794.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:21,33:0.61:54
chr19	35660450	rs2285515	T	C	2014.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.26;ReadPosRankSum=-0.829;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:55,97:0.64:152
chr19	35660508	rs12110	G	A	1759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=4.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.97;ReadPosRankSum=-0.679;SOR=0.378;set=HC	GT:AD:AF:DP	0/1:44,82:0.65:126
chr19	35660546	rs1046294	T	C	1251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.217;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=7.020;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.32;ReadPosRankSum=0.224;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:33,61:0.65:94
chr19	35718820	rs111363505	C	T	2065.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:55,84:0.60:139
chr19	35718938	rs564117	C	T	2685.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:325,152:0.32:477
chr19	35719020	rs541169	C	T	5020.77	.	AC=1;AF=0.500;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	0/1:461,271:0.37:732
chr19	35719076	rs75397987	C	T	10104.77	.	AC=1;AF=0.500;AN=2;DB;DP=730;set=Intersection	GT:AD:AF:DP	0/1:273,453:0.62:726
chr19	35719106	rs565791	A	G	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	0/1:418,226:0.35:644
chr19	35719257	rs11673347	G	A	1184.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:133,67:0.34:200
chr19	35741456	rs2073900	T	C	12621.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:0,486:1.00:486
chr19	35752917	rs2073899	G	A	3390.77	.	AC=1;AF=0.500;AN=2;DB;DP=690;set=Intersection	GT:AD:AF:DP	0/1:479,209:0.30:688
chr19	35757250	rs916147	G	A	11814.77	.	AC=1;AF=0.500;AN=2;DB;DP=795;set=Intersection	GT:AD:AF:DP	0/1:258,535:0.67:793
chr19	35758275	rs142507475	G	GGGA	16306.73	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr19	35760167	rs2515621	G	C	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chr19	35761519	rs28365133	A	G	2512.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:267,134:0.33:401
chr19	35769518	rs34832786	T	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:76,32:0.30:108
chr19	35769561	rs28365136	T	G	1099.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:169,69:0.29:238
chr19	35770064	rs2280747	C	T	1891.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:228,105:0.32:333
chr19	35770174	rs12742	A	G	541.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:102,35:0.26:137
chr19	35785147	rs56138004	C	T	1703.77	.	AC=1;AF=0.500;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	0/1:217,101:0.32:318
chr19	35785378	rs55976703	C	T	1477.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:41,61:0.60:102
chr19	35793589	rs1126770	C	T	6408.77	.	AC=1;AF=0.500;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	0/1:138,285:0.67:423
chr19	35800720	rs10411883	G	C	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:16,45:0.74:61
chr19	35801221	rs73031732	G	C	727.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:11,27:0.71:38
chr19	35835940	rs45453699	C	T	2220.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.821;ClippingRankSum=0.000;DB;DP=518;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.30;ReadPosRankSum=0.002;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:377,140:0.27:517
chr19	35836751	rs4805119	A	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:15,56:0.79:71
chr19	35836859	rs4805120	A	G	537.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chr19	35837428	rs12985354	G	A	1622.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:48,74:0.61:122
chr19	35837694	rs73031792	C	T	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:2,14:0.88:16
chr19	35843086	rs2301151	G	A	10845.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	35849926	rs79251979	G	A	8041.77	.	AC=1;AF=0.500;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	0/1:271,359:0.57:630
chr19	35850672	rs142125121	T	C	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=2.285;MLEAC=1;MLEAF=0.500;MQ=45.62;MQRankSum=-0.284;QD=1.82;ReadPosRankSum=-0.701;SOR=0.406;set=HC	GT:AD:AF:DP	0/1:124,25:0.17:149
chr19	35899055	.	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=3.232;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=2.259;SOR=0.292;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr19	35899217	rs112268455	G	C	722.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr19	35940721	rs117215242	G	C	7442.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:169,328:0.66:497
chr19	35978299	rs7976	C	T	2644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.11;ReadPosRankSum=-0.275;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:55,120:0.69:175
chr19	35978458	rs17638216	G	A	3029.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:41,129:0.76:170
chr19	35978567	rs62111717	T	C	3624.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:83,162:0.66:245
chr19	35979696	rs10410228	C	T	1640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.52;ReadPosRankSum=1.941;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:50,81:0.62:131
chr19	35991043	rs11666154	G	T	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:47,86:0.65:133
chr19	35991373	rs2293695	C	T	2552.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:59,117:0.66:176
chr19	35991437	.	G	C	396.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=1.910;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-1.810;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:80,26:0.25:106
chr19	35991442	rs909072	T	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:1,96:0.99:97
chr19	35992691	rs8100640	A	G	11959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=821;ExcessHet=3.0103;FS=1.166;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.57;ReadPosRankSum=1.319;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:273,548:0.67:821
chr19	35993919	rs8107732	A	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:28,72:0.72:100
chr19	35994126	rs8106676	G	A	131.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	35994376	rs149163465	GTT	G	489.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=10.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.65;ReadPosRankSum=1.446;SOR=2.038;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	35994384	rs3829678	T	G	498.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.143;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=10.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.25;ReadPosRankSum=1.790;SOR=2.038;set=HC	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	35994390	rs3829677	T	G	495.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.41;ReadPosRankSum=2.022;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:2,12:0.86:14
chr19	35998495	rs78446490	C	T	599.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr19	36004106	rs4806163	A	G	15113.77	.	AC=1;AF=0.500;AN=2;DB;DP=987;set=Intersection	GT:AD:AF:DP	0/1:319,667:0.68:986
chr19	36050969	rs2733743	A	G	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr19	36105917	rs34572637	A	G	1329.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=-0.398;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:244,93:0.28:337
chr19	36113658	rs2285414	A	G	1381.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:173,81:0.32:254
chr19	36122441	rs2285415	G	A	274.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr19	36133982	rs3214104	TG	T	696.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,29:0.34:86
chr19	36135279	rs3835005	C	CT	1624.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.932;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=1.218;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.66;ReadPosRankSum=0.868;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:155,57:0.27:212
chr19	36145409	.	C	CA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.934;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.782;QD=1.17;ReadPosRankSum=-0.537;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:92,27:0.23:119
chr19	36168663	rs10413852	G	C	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chr19	36168914	rs2285421	T	C	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.564;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=1.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-1.244;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:215,72:0.25:287
chr19	36206986	rs2234371	G	A	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=356;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.232;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:260,96:0.27:356
chr19	36207510	rs1052491	G	A	17388.77	.	AC=1;AF=0.500;AN=2;DB;DP=1121;set=Intersection	GT:AD:AF:DP	0/1:333,783:0.70:1116
chr19	36214630	rs201534623	G	A	452.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:46,23:0.33:69
chr19	36214632	rs11373774	A	AG	2653.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	36216056	rs3848662	G	T	1641.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=-2.017;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:261,102:0.28:363
chr19	36217884	rs34515466	CA	C	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=-0.000;DB;DP=17;ExcessHet=3.0103;FS=3.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.10;ReadPosRankSum=1.040;SOR=2.030;set=HC	GT:AD:AF:DP	0/1:9,8:0.47:17
chr19	36221051	rs2242520	G	A	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:220,94:0.30:314
chr19	36223111	rs61351824	C	G	10378.77	.	AC=1;AF=0.500;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	0/1:295,491:0.62:786
chr19	36224705	rs231591	A	G	1417.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.582;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:199,88:0.31:287
chr19	36228954	rs2242522	G	T	4706.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:113,203:0.64:316
chr19	36230174	rs12459634	T	C	1039.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:96,56:0.37:152
chr19	36235431	rs3761087	A	G	1690.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;ClippingRankSum=0.000;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.67;ReadPosRankSum=-2.404;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:198,100:0.34:298
chr19	36235928	rs2293686	A	C	565.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:40,27:0.40:67
chr19	36236120	rs231597	A	G	19050.77	.	AC=2;AF=1.00;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr19	36236909	rs10402601	G	C	1166.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.730;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.511;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.92;ReadPosRankSum=0.672;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:163,74:0.31:237
chr19	36237245	rs2293688	C	G	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:170,94:0.36:264
chr19	36239484	rs3746277	A	G	468.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr19	36243089	rs170758	T	C	7887.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	36243190	rs231244	T	C	872.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=4.313;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=2.705;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:176,61:0.26:237
chr19	36243813	rs231243	G	A	14262.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,527:1.00:527
chr19	36246418	rs11549030	C	G	676.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:43,34:0.44:77
chr19	36253317	rs807479	C	T	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:119,61:0.34:180
chr19	36257932	rs35876904	CCT	C	554.73	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr19	36258937	rs5827939	AG	A	10421.73	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr19	36259480	rs113059159	C	CT	205.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.158;SOR=0.362;set=HC	GT:AD:AF:DP	0/1:91,29:0.24:120
chr19	36273534	rs2291067	G	A	1772.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:172,93:0.35:265
chr19	36275074	rs62112163	G	A	891.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.517;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-0.564;SOR=1.008;set=HC	GT:AD:AF:DP	0/1:128,54:0.30:182
chr19	36276086	rs2239949	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.42;ReadPosRankSum=2.140;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:133,42:0.24:175
chr19	36279862	rs59882609	AG	A	1440.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	36290977	rs3761097	C	T	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:72,41:0.36:113
chr19	36302921	rs12462360	T	C	3538.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:65,159:0.71:224
chr19	36303664	rs3848666	G	C	3953.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:75,183:0.71:258
chr19	36321910	rs731934	G	A	4084.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:58,179:0.76:237
chr19	36322270	rs2071327	C	T	7918.77	.	AC=1;AF=0.500;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	0/1:135,349:0.72:484
chr19	36322509	rs466452	G	A	1364.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.684;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=1.768;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.791;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:192,81:0.30:273
chr19	36342212	rs3814995	C	T	1829.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:256,106:0.29:362
chr19	36351768	rs60849332	G	A	6182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=1.220;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:133,278:0.68:411
chr19	36351935	rs35854130	G	T	7813.77	.	AC=1;AF=0.500;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	0/1:152,340:0.69:492
chr19	36355595	rs382789	A	G	3450.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	36435936	rs144984680	CT	C	347.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:14,12:0.46:26
chr19	36486445	rs7249826	G	C	4925.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.37;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	36497358	rs2285422	C	G	3421.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	36536938	rs7258807	A	G	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr19	36549690	rs11538454	C	T	1135.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:114,60:0.34:174
chr19	36558113	rs12608517	T	C	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:18,33:0.65:51
chr19	36564653	rs11669890	C	T	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:113,48:0.30:161
chr19	36575645	rs2301734	G	A	1192.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.15;ReadPosRankSum=0.189;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:128,66:0.34:194
chr19	36577550	rs2301735	G	A	2619.77	.	AC=1;AF=0.500;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	0/1:44,117:0.73:161
chr19	36584904	rs2301737	C	T	419.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=1.739;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=1.180;SOR=0.932;set=HC	GT:AD:AF:DP	0/1:89,29:0.25:118
chr19	36590329	rs2285745	T	C	2920.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:59,124:0.68:183
chr19	36595436	rs1008328	A	C	2620.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:277,137:0.33:414
chr19	36602097	rs2075472	C	T	197.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:31,12:0.28:43
chr19	36602450	rs2075473	G	A	13068.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:265,576:0.68:841
chr19	36605552	rs2231566	G	A	2940.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:70,132:0.65:202
chr19	36631940	.	G	GGGC	1418.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744;ClippingRankSum=0.000;DP=169;ExcessHet=3.0103;FS=10.604;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=3.483;QD=9.85;ReadPosRankSum=-0.183;SOR=0.235;set=HC	GT:AD:AF:DP	0/1:101,43:0.30:144
chr19	36640769	rs14100	T	C	3512.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	36642310	rs2008683	T	C	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	36642554	rs2285598	C	G	2177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=13.609;MLEAC=1;MLEAF=0.500;MQ=62.60;MQRankSum=13.774;QD=9.59;ReadPosRankSum=0.557;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:162,65:0.29:227
chr19	36642561	.	G	GC	2326.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DP=247;ExcessHet=3.0103;FS=17.142;MLEAC=1;MLEAF=0.500;MQ=62.49;MQRankSum=13.508;QD=9.82;ReadPosRankSum=0.853;SOR=0.171;set=HC	GT:AD:AF:DP	0/1:167,70:0.30:237
chr19	36642562	rs2285599	A	C	2338.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=6.641;ClippingRankSum=0.000;DB;DP=252;ExcessHet=3.0103;FS=16.285;MLEAC=1;MLEAF=0.500;MQ=62.44;MQRankSum=13.528;QD=9.66;ReadPosRankSum=1.079;SOR=0.189;set=HC	GT:AD:AF:DP	0/1:171,71:0.29:242
chr19	36642884	rs17879437	T	C	533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=4.605;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.21;ReadPosRankSum=-2.197;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:44,30:0.41:74
chr19	36674305	rs4805162	A	G	1905.77	.	AC=1;AF=0.500;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	0/1:259,111:0.30:370
chr19	36685310	rs2287897	C	T	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.014;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.01;ReadPosRankSum=0.934;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr19	36685316	rs2287898	T	C	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.88;ReadPosRankSum=0.299;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:47,20:0.30:67
chr19	36686205	rs56206115	G	A	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	36727365	rs2070132	G	A	5814.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:131,258:0.66:389
chr19	36728290	rs4806293	A	G	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=0.973;SOR=0.205;set=HC	GT:AD:AF:DP	0/1:38,11:0.22:49
chr19	36896668	rs142442911	GTAAT	G	319.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;MQ=60.36;set=Intersection	GT:AD:AF:DP	0/1:17,10:0.37:27
chr19	36900778	rs2271842	A	C	291.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=1.263;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.63;ReadPosRankSum=0.717;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr19	36940760	rs2967532	G	T	7793.77	.	AC=1;AF=0.500;AN=2;DB;DP=525;set=Intersection	GT:AD:AF:DP	0/1:167,355:0.68:522
chr19	36940965	rs2912441	A	G	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	36963637	rs2967539	C	T	302.28	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:1,12:0.92:13
chr19	36964376	rs2967540	C	T	5149.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:114,229:0.67:343
chr19	36967352	rs150830509	T	TTTTC	942.73	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	36981218	rs2967473	G	A	4240.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	37004938	rs2967505	T	C	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:53,103:0.66:156
chr19	37038092	rs2278168	T	C	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.649;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=-0.975;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:117,44:0.27:161
chr19	37039069	rs2912444	A	C	11959.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr19	37063218	rs11448179	C	CA	1637.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.472;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.096;QD=5.81;ReadPosRankSum=0.239;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:158,124:0.44:282
chr19	37064240	rs2967442	A	G	3485.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	37064267	rs3096618	C	T	2515.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.215;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=1.518;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:44,117:0.73:161
chr19	37065732	rs2912406	A	C	622.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.348;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:75,37:0.33:112
chr19	37065914	rs3108597	G	A	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:7,11:0.61:18
chr19	37068081	rs2912410	G	C	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	37068235	rs3108598	T	C	1434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.07;ReadPosRankSum=-0.748;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:32,70:0.69:102
chr19	37117302	rs3108171	A	G	1537.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:155,81:0.34:236
chr19	37118439	rs61732180	C	T	1336.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:171,82:0.32:253
chr19	37128584	.	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.72;MQRankSum=0.842;QD=2.38;ReadPosRankSum=0.350;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	37134864	rs62112477	C	T	68.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:8,4:0.33:12
chr19	37147330	rs12981751	T	G	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.882;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=-2.141;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:100,23:0.19:123
chr19	37185813	rs36094586	CT	C	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.640;ClippingRankSum=-0.000;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.73;ReadPosRankSum=0.786;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	37203249	rs1830031	T	C	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chr19	37210529	rs3108200	A	G	1243.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:187,73:0.28:260
chr19	37210805	rs3108201	C	T	1883.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=1.985;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=1.862;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:315,117:0.27:432
chr19	37239278	rs11672680	C	A	5876.77	.	AC=1;AF=0.500;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	0/1:145,257:0.64:402
chr19	37241141	rs1673082	A	G	9781.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	37241781	rs2462576	G	A	286.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr19	37310344	rs3745775	T	C	2733.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:70,124:0.64:194
chr19	37314254	rs140609486	G	A	1104.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:158,70:0.31:228
chr19	37440363	rs17242235	G	A	180.79	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr19	37689998	rs12459637	C	T	3048.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:58,134:0.70:192
chr19	37690420	rs1234250	C	T	2918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.617;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.75;ReadPosRankSum=1.288;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:94,135:0.59:229
chr19	37721404	.	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.595;ClippingRankSum=0.000;DP=186;ExcessHet=3.0103;FS=1.782;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-0.672;SOR=0.465;set=HC	GT:AD:AF:DP	0/1:113,39:0.26:152
chr19	37733771	rs12974332	A	C	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:47,71:0.60:118
chr19	37854580	rs3745764	C	T	4378.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:149,201:0.57:350
chr19	37864925	rs61161652	A	AC	2019.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	37958973	rs35295578	GT	G	492.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.940;QD=6.57;ReadPosRankSum=-1.171;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:34,41:0.55:75
chr19	38024271	rs12977460	T	G	2698.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=0.393;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:39,121:0.76:160
chr19	38028813	rs369737171	AT	A	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=4.170;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.944;QD=4.76;ReadPosRankSum=-0.908;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:17,21:0.55:38
chr19	38056087	rs45542635	C	T	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:107,51:0.32:158
chr19	38056763	rs8111790	C	G	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,38:0.35:108
chr19	38077474	rs2306201	G	A	276.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:57,19:0.25:76
chr19	38077661	rs8111055	G	A	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:126,63:0.33:189
chr19	38090759	rs17305228	C	G	232.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr19	38135403	rs2972458	T	C	3785.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	38135444	rs71298747	C	CAAAAAG	13089.73	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr19	38184262	rs17246792	C	T	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr19	38189440	rs958305	T	C	11508.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr19	38189616	rs2075284	T	C	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	38190845	rs5827990	GT	G	467.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	38198610	rs7255313	G	A	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:48,16:0.25:64
chr19	38202516	rs2909097	A	C	4903.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	38229378	rs1291	G	A	6221.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	38229824	rs3095726	T	C	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	38230720	rs3752365	C	G	2969.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:69,129:0.65:198
chr19	38315254	.	G	A	2443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.985;ClippingRankSum=0.000;DP=506;ExcessHet=3.0103;FS=1.216;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=1.206;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:357,146:0.29:503
chr19	38377409	rs7252765	A	T	3959.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.89;SOR=1.560;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr19	38383767	rs140149327	T	G	1174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=1.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=3.381;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:224,75:0.25:299
chr19	38621473	rs861304	G	A	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	38633159	rs2304132	C	T	1486.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:25,59:0.70:84
chr19	38652993	rs332864	C	T	654.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:117,43:0.27:160
chr19	38696708	rs74573108	G	A	1051.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.37;ReadPosRankSum=2.841;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:18,27:0.60:45
chr19	38696714	rs10419131	T	C	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.60;ReadPosRankSum=1.990;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:16,30:0.65:46
chr19	38702777	rs2288906	C	T	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:167,74:0.31:241
chr19	38708329	rs2304174	A	C	1972.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:27,73:0.73:100
chr19	38708398	rs2304175	A	C	2370.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:33,103:0.76:136
chr19	38709532	rs2288907	C	G	9400.77	.	AC=1;AF=0.500;AN=2;DB;DP=647;set=Intersection	GT:AD:AF:DP	0/1:227,419:0.65:646
chr19	38709552	rs2288909	C	T	11684.77	.	AC=1;AF=0.500;AN=2;DB;DP=814;set=Intersection	GT:AD:AF:DP	0/1:288,526:0.65:814
chr19	38709568	rs2255456	C	T	13865.77	.	AC=1;AF=0.500;AN=2;DB;DP=966;set=Intersection	GT:AD:AF:DP	0/1:332,634:0.66:966
chr19	38747005	.	C	G	136.77	.	AC=1;AF=0.500;AN=2;DP=23;set=Intersection	GT:AD:AF:DP	0/1:15,8:0.35:23
chr19	38794895	rs2304176	T	C	995.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:137,59:0.30:196
chr19	38795550	rs147127327	G	GAAGAAGGAGAAGGGC	2345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.433;ClippingRankSum=0.000;DB;DP=218;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.051;QD=12.54;ReadPosRankSum=1.399;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:130,57:0.30:187
chr19	38798028	rs79603054	C	T	2239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=1.847;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.56;ReadPosRankSum=1.701;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:269,134:0.33:403
chr19	38798086	rs3178327	T	C	3584.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:410,208:0.34:618
chr19	38800176	rs11556992	G	A	808.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:98,46:0.32:144
chr19	38810744	rs142888784	C	G	1769.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr19	38817110	rs7250755	A	G	2385.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	38817201	.	AG	A	2997.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DP=443;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.291;QD=6.78;ReadPosRankSum=0.449;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:311,131:0.30:442
chr19	38826656	rs59898212	G	C	48.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=2.310;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=1.334;SOR=0.194;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr19	38826947	rs56849284	T	C	601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=1.900;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:95,39:0.29:134
chr19	38847431	rs2286475	T	C	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:118,65:0.36:183
chr19	38848861	rs8106895	C	G	920.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.727;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=0.653;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.53;ReadPosRankSum=-0.371;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:88,53:0.38:141
chr19	38850246	rs60071299	G	A	431.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.314;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.54;ReadPosRankSum=-1.280;SOR=1.002;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr19	38852453	rs3745954	C	T	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	0/1:540,257:0.32:797
chr19	38858433	rs2302186	C	T	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.83;ReadPosRankSum=0.226;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:108,36:0.25:144
chr19	38861333	rs1052375	G	A	5214.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:92,236:0.72:328
chr19	38865636	rs12608599	G	C	629.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=-0.032;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:80,39:0.33:119
chr19	38867121	rs2302227	G	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,26:0.38:68
chr19	38876352	rs56854837	G	A	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:216,106:0.33:322
chr19	38876464	rs11083455	C	G	335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.074;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=2.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.818;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:78,22:0.22:100
chr19	38877052	.	A	G	2548.77	.	AC=1;AF=0.500;AN=2;DP=418;set=Intersection	GT:AD:AF:DP	0/1:277,138:0.33:415
chr19	38877997	rs62123482	G	T	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:42,99:0.70:141
chr19	38882781	rs12609878	T	G	1202.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:129,68:0.35:197
chr19	38884909	rs79210197	A	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr19	38893856	rs3745957	G	C	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.34;ReadPosRankSum=0.910;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:130,35:0.21:165
chr19	38893924	rs3745958	A	G	519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.033;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:184,47:0.20:231
chr19	38893935	rs3745959	C	T	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.029;ClippingRankSum=0.000;DB;DP=232;ExcessHet=3.0103;FS=1.251;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.69;ReadPosRankSum=-0.545;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:182,50:0.22:232
chr19	38899501	.	CAAG	C	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.093;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-0.592;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:81,13:0.14:94
chr19	38935280	rs2229139	A	G	12884.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr19	38935350	rs35018208	T	TC	18697.73	.	AC=2;AF=1.00;AN=2;DB;DP=759;set=Intersection	GT:AD:AF:DP	1/1:2,736:1.00:738
chr19	38939408	rs10406027	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	38939505	rs4476278	T	C	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	38942714	rs4802469	G	A	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	38943728	rs12460768	G	A	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	38945851	rs7254832	T	C	4025.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	38946182	rs2288888	G	A	14971.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:2,557:1.00:559
chr19	38946215	rs2288889	G	C	9589.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr19	38948356	rs2071085	T	C	9196.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	38948420	rs73044990	C	G	2011.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:72,91:0.56:163
chr19	38949904	rs3745847	C	T	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	38950947	rs2304147	C	T	5184.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr19	38953996	rs2304148	A	G	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	38956803	rs2228069	G	A	10780.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr19	38993391	.	T	TGGGGCA,TGGGGCAGGGGCAGGGGCA	1583.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.183;ClippingRankSum=0.000;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=43.99;ReadPosRankSum=1.542;SOR=5.784;set=HC	GT:AD:AF:DP	1/2:1,28,7:0.78,0.19:36
chr19	38996871	rs73030989	C	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:49,93:0.65:142
chr19	39026738	.	C	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=1.359;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.410;SOR=1.070;set=HC	GT:AD:AF:DP	0/1:93,14:0.13:107
chr19	39051680	.	TA	T	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=8.446;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.609;QD=1.24;ReadPosRankSum=2.503;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:58,23:0.28:81
chr19	39105184	.	G	A	480.77	.	AC=1;AF=0.500;AN=2;DP=88;set=Intersection	GT:AD:AF:DP	0/1:62,26:0.30:88
chr19	39138608	rs2303040	T	C	691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=5.519;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.09;ReadPosRankSum=0.507;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:9,34:0.79:43
chr19	39191383	rs2112649	G	C	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,221:1.00:222
chr19	39191544	rs73038909	G	A	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=1.338;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:44,10:0.19:54
chr19	39196736	rs11553600	G	A	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:174,83:0.32:257
chr19	39196745	rs3745859	C	T	4242.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:87,190:0.69:277
chr19	39212392	rs77822825	C	T	2063.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:278,121:0.30:399
chr19	39214633	rs139575917	C	T	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:280,130:0.32:410
chr19	39215333	rs3786851	C	T	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr19	39219050	.	G	GCTCCTCCTCCTC	955.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.040;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:25,35:0.58:60
chr19	39219780	rs1136956	T	C	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:228,97:0.30:325
chr19	39221715	rs141208726	CCCATGCCCCA	C	968.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=5.037;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.547;QD=7.23;ReadPosRankSum=0.508;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chr19	39224413	rs4801861	A	G	11153.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:2,428:1.00:430
chr19	39226648	.	AGGTCTCGGG	A	187.87	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	39227107	rs202243527	TTTGACCAAGCCCCAGGGCAGG	T	3102.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.80;ReadPosRankSum=2.775;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:75,90:0.55:165
chr19	39228244	rs73038948	T	C	2319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.810;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.15;ReadPosRankSum=-1.818;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:406,153:0.27:559
chr19	39228868	rs34488364	G	GCA	231.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	39232968	rs35341175	C	CA	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.46;ReadPosRankSum=-1.077;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:78,20:0.20:98
chr19	39233146	rs936524	A	G	5275.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	39234511	rs4802775	C	T	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chr19	39279713	rs4802853	A	G	125.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	39281540	rs147201724	T	A	111.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=27.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	39294466	rs11881973	C	A	2941.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=1.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.99;ReadPosRankSum=-1.382;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:47,137:0.74:184
chr19	39297007	rs74176466	C	CA	496.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,33:0.62:53
chr19	39299263	.	C	CA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.81;ReadPosRankSum=0.492;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:10,7:0.41:17
chr19	39306425	rs2075588	A	C	6493.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:127,297:0.70:424
chr19	39307612	rs45561337	C	G	2255.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.286;ClippingRankSum=0.000;DB;DP=489;ExcessHet=3.0103;FS=1.213;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=-0.019;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:340,146:0.30:486
chr19	39307925	rs2287953	C	T	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:26,62:0.70:88
chr19	39322087	rs9419	T	G	1885.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:255,110:0.30:365
chr19	39327569	rs73040183	C	A	1463.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:35,63:0.64:98
chr19	39328145	rs2278010	A	C	912.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.502;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.231;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:202,59:0.23:261
chr19	39334811	rs2278011	T	A	232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.809;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=1.134;SOR=0.302;set=HC	GT:AD:AF:DP	0/1:77,20:0.21:97
chr19	39334830	rs2278012	C	T	174.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.117;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=6.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.50;ReadPosRankSum=0.340;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:54,16:0.23:70
chr19	39338125	rs862454	G	A	2088.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:167,113:0.40:280
chr19	39338142	rs862455	A	G	1801.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:154,98:0.39:252
chr19	39360720	rs8110393	G	A	5444.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:115,214:0.65:329
chr19	39361658	rs8100220	G	C	3907.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:99,169:0.63:268
chr19	39364415	rs6508823	C	T	344.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:20,17:0.46:37
chr19	39366899	rs1529713	A	G	4317.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:97,201:0.67:298
chr19	39367111	rs1001413	T	C	3686.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:68,155:0.70:223
chr19	39370217	rs45496398	G	C	12657.77	.	AC=1;AF=0.500;AN=2;DB;DP=829;set=Intersection	GT:AD:AF:DP	0/1:244,581:0.70:825
chr19	39370456	rs45625332	T	G	850.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.686;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=9.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.47;ReadPosRankSum=-0.101;SOR=2.091;set=HC	GT:AD:AF:DP	0/1:21,34:0.62:55
chr19	39385532	rs10410544	T	C	4890.77	.	AC=1;AF=0.500;AN=2;DB;DP=874;set=Intersection	GT:AD:AF:DP	0/1:592,281:0.32:873
chr19	39398005	.	C	T	2874.77	.	AC=1;AF=0.500;AN=2;DP=487;set=Intersection	GT:AD:AF:DP	0/1:327,159:0.33:486
chr19	39400054	rs11404115	T	TA	1789.73	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:89,62:0.41:151
chr19	39402455	rs76973734	C	G	1158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=0.649;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:114,67:0.37:181
chr19	39407014	rs4801945	C	A	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:115,44:0.28:159
chr19	39408360	rs7508411	A	G	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=-1.268;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:67,26:0.28:93
chr19	39408688	rs4803034	C	G	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.228;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:199,66:0.25:265
chr19	39409236	rs11083489	C	A	455.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:79,29:0.27:108
chr19	39409637	rs12459197	C	T	142.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	39416887	rs11544093	C	T	2418.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-1.268;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:333,148:0.31:481
chr19	39421388	rs730078	A	G	841.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:107,43:0.29:150
chr19	39433136	rs77963530	C	CA	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,13:0.35:37
chr19	39433299	rs8113389	A	G	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=465;set=Intersection	GT:AD:AF:DP	0/1:310,153:0.33:463
chr19	39433497	rs11313800	GT	G	555.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:54,18:0.25:72
chr19	39433499	rs57290038	T	G	564.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.031;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.95;ReadPosRankSum=0.723;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr19	39435485	rs10416055	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:14,10:0.42:24
chr19	39435933	rs11672849	C	G	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.722;QD=3.21;ReadPosRankSum=-2.842;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:88,29:0.25:117
chr19	39437258	rs10568003	TCA	T	3619.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=0.861;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.640;QD=9.31;ReadPosRankSum=1.242;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:283,106:0.27:389
chr19	39437270	rs2278412	G	A	3663.77	.	AC=1;AF=0.500;AN=2;DB;DP=384;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:273,111:0.29:384
chr19	39440918	rs2304117	T	C	607.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.956;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.229;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=0.790;SOR=1.042;set=HC	GT:AD:AF:DP	0/1:120,44:0.27:164
chr19	39440966	rs2304118	T	C	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.965;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=4.245;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.44;ReadPosRankSum=2.447;SOR=1.204;set=HC	GT:AD:AF:DP	0/1:90,27:0.23:117
chr19	39443577	rs12608890	A	T	795.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,36:0.39:92
chr19	39517715	rs57724551	C	T	330.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:27,15:0.36:42
chr19	39589189	rs55878600	C	T	3708.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:74,165:0.69:239
chr19	39589334	rs560364	G	A	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	39589518	rs190998143	T	C	831.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.420;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=6.050;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.70;ReadPosRankSum=1.586;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:82,26:0.24:108
chr19	39589520	rs371296886	CACCAGTCGGGGAAGGATGGGGTTGGAGGGAGGG	C	718.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=4.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.67;ReadPosRankSum=1.872;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:127,27:0.18:154
chr19	39589548	rs57824661	G	A	2838.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.009;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=5.708;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.99;ReadPosRankSum=-0.216;SOR=1.385;set=HC	GT:AD:AF:DP	0/1:27,115:0.81:142
chr19	39590853	rs142348602	G	GC	4505.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.53;ReadPosRankSum=-0.780;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:91,166:0.65:257
chr19	39590955	rs8110736	G	A	5916.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:148,278:0.65:426
chr19	39591748	rs11673089	G	A	8771.77	.	AC=1;AF=0.500;AN=2;DB;DP=544;set=Intersection	GT:AD:AF:DP	0/1:160,383:0.71:543
chr19	39592138	rs1313617	C	T	2157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-1.945;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:339,137:0.29:476
chr19	39664664	rs199570847	T	TGCCCTGCC	785.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=2.369;QD=12.28;ReadPosRankSum=0.707;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:41,23:0.36:64
chr19	39665793	rs143360302	G	C	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr19	39666112	rs10417035	A	G	1439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.087;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=6.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.042;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:240,91:0.27:331
chr19	39687592	rs12462614	T	C	155.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=0.801;SOR=1.030;set=HC	GT:AD:AF:DP	0/1:21,10:0.32:31
chr19	39688815	rs12610064	C	T	957.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-1.715;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:144,60:0.29:204
chr19	39688901	rs12610093	G	T	881.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:106,52:0.33:158
chr19	39689943	rs12610530	G	A	616.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:55,31:0.36:86
chr19	39691136	rs11672471	C	A	1343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.802;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.446;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:228,81:0.26:309
chr19	39691216	rs11672475	A	T	2339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=597;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.308;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:440,155:0.26:595
chr19	39691239	rs11672479	A	G	2734.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-2.152;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:533,189:0.26:722
chr19	39760069	rs30481	G	C	8883.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr19	39760191	rs8103362	A	G	2985.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.118;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=1.252;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-2.072;QD=4.01;ReadPosRankSum=-0.441;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:543,201:0.27:744
chr19	39760336	rs58736064	T	G	1946.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:223,109:0.33:332
chr19	39760435	rs59746524	T	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.657;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=2.271;MLEAC=1;MLEAF=0.500;MQ=50.64;MQRankSum=-6.739;QD=1.40;ReadPosRankSum=-0.791;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:102,16:0.14:118
chr19	39888449	rs519575	C	T	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:121,50:0.29:171
chr19	39914308	rs31725	C	T	4770.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:129,225:0.64:354
chr19	39914748	rs31726	G	A	13266.77	.	AC=1;AF=0.500;AN=2;DB;DP=847;set=Intersection	GT:AD:AF:DP	0/1:261,578:0.69:839
chr19	39915637	rs31727	G	A	3763.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:107,159:0.60:266
chr19	39915758	rs31728	C	G	6067.77	.	AC=1;AF=0.500;AN=2;DB;DP=473;set=Intersection	GT:AD:AF:DP	0/1:171,300:0.64:471
chr19	39916110	rs16746	GGGA	G	1494.73	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr19	39924129	rs566130	T	C	7647.77	.	AC=1;AF=0.500;AN=2;DB;DP=466;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:128,335:0.72:463
chr19	39926509	rs17628	A	C	7828.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:181,376:0.68:557
chr19	39926521	rs17626	G	A	7070.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:148,320:0.68:468
chr19	39932066	rs1865091	T	C	576.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	39936502	rs1932	G	A	6063.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:124,275:0.69:399
chr19	39936693	rs2116932	C	T	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr19	39944082	rs1130180	C	T	2157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-1.749;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:67,105:0.61:172
chr19	39948871	rs374640896	CCCACCA	C,CCCA	8621.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=339;set=Intersection	GT:AF:DP	1/2:0.73,0.27:241
chr19	39948913	.	ACCTCCT	A	2995	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=4;HapScore=1;MGOF=26;MMLQ=26;MQ=59.2;NF=5;NR=215;PP=2995;QD=20;SC=CACCACCACCACCTCCTCTTC;SbPval=1.0;Source=Platypus;TC=375;TCF=43;TCR=332;TR=220;WE=39948926;WS=39948903;set=Platypus	GT:AD:AF:DP	0/1:155,220:0.59:375
chr19	39955533	rs2304217	G	A	4351.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:113,193:0.63:306
chr19	39957232	rs57236251	TGG	T	5668.73	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:127,251:0.66:378
chr19	39957472	rs8103333	C	T	1625.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:31,61:0.66:92
chr19	39971432	rs2304220	G	C	3436.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:54,144:0.73:198
chr19	39971622	rs2304221	C	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:4,11:0.73:15
chr19	39976464	rs4803245	C	G	4069.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:96,178:0.65:274
chr19	39976734	rs4803247	G	A	966.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chr19	39976969	rs1865094	T	C	4257.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:97,196:0.67:293
chr19	39977173	rs8112528	G	A	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,56:0.65:86
chr19	39978610	rs74178079	GTGTA	G	2545.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:41,65:0.61:106
chr19	39990245	rs3212275	G	C	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:68,150:0.69:218
chr19	39991237	rs2304223	C	G	7325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.618;ClippingRankSum=0.000;DB;DP=602;ExcessHet=3.0103;FS=0.530;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-0.017;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:242,359:0.60:601
chr19	39993415	rs2278440	C	T	2026.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:48,91:0.65:139
chr19	39993560	rs8107127	T	G	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:17,26:0.60:43
chr19	39993591	rs8106337	C	G	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chr19	39994711	rs1110627	T	C	2279.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:46,104:0.69:150
chr19	39996027	rs2304214	C	T	7784.77	.	AC=1;AF=0.500;AN=2;DB;DP=535;set=Intersection	GT:AD:AF:DP	0/1:178,355:0.67:533
chr19	40023308	rs1123301	A	G	6581.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:159,284:0.64:443
chr19	40030704	rs7252027	C	T	4638.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:102,209:0.67:311
chr19	40093111	rs3764843	C	A	3350.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	40096089	rs2233707	T	C	1209.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr19	40096127	rs2233709	C	T	302.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr19	40149297	rs1860134	T	A	5676.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	40149330	rs997104	G	C	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:92,56:0.38:148
chr19	40170053	rs8103033	G	A	769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.239;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.79;ReadPosRankSum=-0.301;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:88,45:0.34:133
chr19	40174119	rs1126159	C	T	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=2.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.81;ReadPosRankSum=-0.688;SOR=0.940;set=HC	GT:AD:AF:DP	0/1:168,65:0.28:233
chr19	40174236	rs7258833	G	A	2991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;ClippingRankSum=0.000;DB;DP=625;ExcessHet=3.0103;FS=1.922;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.79;ReadPosRankSum=0.372;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:440,184:0.29:624
chr19	40197924	rs4830	T	C	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:158,65:0.29:223
chr19	40199914	rs10755	C	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.497;SOR=0.736;set=HC	GT:AD:AF:DP	0/1:176,53:0.23:229
chr19	40224833	rs375867	A	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:39,22:0.36:61
chr19	40224869	rs391646	T	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:57,46:0.45:103
chr19	40224887	rs391660	T	C	1968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.519;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.27;ReadPosRankSum=0.841;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:68,53:0.44:121
chr19	40224894	rs2074927	C	T	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.24;ReadPosRankSum=1.845;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:83,56:0.40:139
chr19	40224901	rs453827	G	A	2129.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.266;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.657;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=2.090;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:90,58:0.39:148
chr19	40224986	rs384138	A	G	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:200,114:0.36:314
chr19	40225168	rs399641	T	A	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:49,24:0.33:73
chr19	40225646	rs17608	G	A	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:184,87:0.32:271
chr19	40225790	rs76370710	C	T	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr19	40318086	rs12977762	A	G	22549.77	.	AC=2;AF=1.00;AN=2;DB;DP=703;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.17;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,701:1.00:701
chr19	40318086	.	AG	GA,GG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=28;MQ=60.0;NF=103,345;NR=88,314;PP=2375,2962;QD=12.7144914914;SC=GCAGGGGTCAAGGTCATCAGG;SbPval=0.58;Source=Platypus;TC=662;TCF=347;TCR=315;TR=191,659;WE=40318095;WS=40318076;set=Platypus	GT:AF:DP	0/1:0.29:662
chr19	40318087	rs56110449	G	A	3654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.205;ClippingRankSum=0.000;DB;DP=700;ExcessHet=3.0103;FS=1.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-0.495;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:488,210:0.30:698
chr19	40327312	rs3760924	A	G	1883.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:42,85:0.67:127
chr19	40328327	rs649908	C	A	1044.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:10,46:0.82:56
chr19	40328615	rs616650	C	T	1212.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	40337080	rs11881344	C	T	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:34,11:0.24:45
chr19	40362573	rs10422312	A	G	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.00;SOR=9.308;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	40363020	rs741143	G	A	2360.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:226,122:0.35:348
chr19	40363926	rs3746013	C	G	3113.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:323,170:0.34:493
chr19	40364280	rs113103150	G	A	4782.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:65,202:0.76:267
chr19	40366362	rs3855679	G	C	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	40366603	rs3061825	G	GGC	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:43,18:0.30:61
chr19	40366716	rs112657897	G	A	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:11,6:0.35:17
chr19	40367862	rs6508920	T	C	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	40368274	.	C	A	3619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602;ClippingRankSum=0.000;DP=230;ExcessHet=3.0103;FS=53.288;MLEAC=1;MLEAF=0.500;MQ=49.39;MQRankSum=-10.126;QD=18.19;ReadPosRankSum=0.268;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:94,105:0.53:199
chr19	40368280	rs62106924	A	G	4194.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=34.343;MLEAC=1;MLEAF=0.500;MQ=50.92;MQRankSum=-11.646;QD=15.42;ReadPosRankSum=0.562;SOR=0.438;set=HC	GT:AD:AF:DP	0/1:132,140:0.51:272
chr19	40368391	rs76288738	G	A	1973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=4.680;MLEAC=1;MLEAF=0.500;MQ=55.84;MQRankSum=-3.947;QD=3.95;ReadPosRankSum=1.406;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:362,138:0.28:500
chr19	40368395	rs28472548	C	T	7712.77	.	AC=1;AF=0.500;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	0/1:132,355:0.73:487
chr19	40368478	rs77170940	G	A	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.384;ClippingRankSum=0.000;DB;DP=231;ExcessHet=3.0103;FS=25.407;MLEAC=1;MLEAF=0.500;MQ=57.54;MQRankSum=-9.737;QD=0.29;ReadPosRankSum=-8.460;SOR=2.786;set=HC	GT:AD:AF:DP	0/1:205,26:0.11:231
chr19	40368498	rs12610683	AA	CC	7212.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	40368520	rs36079378	G	C	3336.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	40373869	.	T	C	805.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.911;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=46.44;MQRankSum=-1.922;QD=40.29;ReadPosRankSum=0.000;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:2,18:0.90:20
chr19	40373889	.	CCA	TTG	993.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.70;MQRankSum=-2.776;QD=23.11;ReadPosRankSum=4.803;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr19	40373908	.	C	G	1048.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.971;MLEAC=1;MLEAF=0.500;MQ=47.66;MQRankSum=-4.404;QD=14.57;ReadPosRankSum=2.369;SOR=0.461;set=HC	GT:AD:AF:DP	0/1:41,31:0.43:72
chr19	40374023	.	C	T	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.804;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=9.086;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-1.498;QD=4.45;ReadPosRankSum=-1.313;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:60,13:0.18:73
chr19	40374025	.	A	C	324.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.008;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=6.897;MLEAC=1;MLEAF=0.500;MQ=46.53;MQRankSum=-2.216;QD=4.64;ReadPosRankSum=-0.493;SOR=1.867;set=HC	GT:AD:AF:DP	0/1:58,12:0.17:70
chr19	40374034	rs138587194	A	G	1686.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.29;QD=29.08;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	40376880	rs75009537	T	C	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.40;QD=29.45;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	40376881	rs74819672	G	C	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.723;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=14.471;MLEAC=1;MLEAF=0.500;MQ=49.40;MQRankSum=-3.755;QD=3.75;ReadPosRankSum=0.974;SOR=3.767;set=HC	GT:AD:AF:DP	0/1:29,8:0.22:37
chr19	40384518	rs149161739	T	C	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=26.30;SOR=5.670;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	40384605	rs143306165	A	G	85.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.24;QD=28.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	40384623	rs151293840	A	G	83.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.24;QD=27.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	40389581	rs143411450	G	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.848;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=1.067;MLEAC=1;MLEAF=0.500;MQ=52.67;MQRankSum=-5.724;QD=8.65;ReadPosRankSum=2.988;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:45,25:0.36:70
chr19	40389600	.	C	G	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=2.264;MLEAC=1;MLEAF=0.500;MQ=50.40;MQRankSum=-3.088;QD=0.30;ReadPosRankSum=-0.109;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:111,17:0.13:128
chr19	40392359	rs56242719	T	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.31;QD=26.03;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	40392482	rs62108883	A	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=6.107;MLEAC=1;MLEAF=0.500;MQ=51.43;MQRankSum=-2.643;QD=4.65;ReadPosRankSum=-0.362;SOR=1.265;set=HC	GT:AD:AF:DP	0/1:20,9:0.31:29
chr19	40392496	rs143680639	C	T	44.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=4.170;MLEAC=1;MLEAF=0.500;MQ=52.21;MQRankSum=-1.796;QD=1.40;ReadPosRankSum=0.572;SOR=1.206;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr19	40392585	rs79253448	T	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:23,15:0.39:38
chr19	40396323	rs369105601	C	G	266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.94;MQRankSum=-0.320;QD=16.67;ReadPosRankSum=-0.586;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:3,13:0.81:16
chr19	40405899	rs7507507	G	T	991.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.890;MLEAC=1;MLEAF=0.500;MQ=55.31;MQRankSum=-5.814;QD=13.77;ReadPosRankSum=0.127;SOR=1.307;set=HC	GT:AD:AF:DP	0/1:44,28:0.39:72
chr19	40405903	rs199846896	A	AGCCC	1135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.845;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=8.583;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-6.094;QD=15.35;ReadPosRankSum=0.584;SOR=1.718;set=HC	GT:AD:AF:DP	0/1:47,27:0.36:74
chr19	40405905	.	C	G	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.573;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=7.958;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-7.113;QD=15.52;ReadPosRankSum=0.106;SOR=1.560;set=HC	GT:AD:AF:DP	0/1:49,30:0.38:79
chr19	40405912	rs45494494	T	C	1211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.040;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=5.518;MLEAC=1;MLEAF=0.500;MQ=55.37;MQRankSum=-6.839;QD=13.62;ReadPosRankSum=-1.262;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:52,37:0.42:89
chr19	40408128	rs4803310	C	T	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,102:0.68:149
chr19	40408857	rs4802064	T	C	5662.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:124,268:0.68:392
chr19	40519585	.	G	A	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=1.725;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.29;ReadPosRankSum=-1.571;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chr19	40556103	.	CAA	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=3.424;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.70;ReadPosRankSum=-0.263;SOR=2.179;set=HC	GT:AD:AF:DP	0/1:5,6:0.55:11
chr19	40590499	rs71889243	CT	C	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=2.474;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=-0.572;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chr19	40719076	rs1129156	T	C	3335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DB;DP=682;ExcessHet=3.0103;FS=0.567;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.90;ReadPosRankSum=-1.509;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:470,211:0.31:681
chr19	40720079	rs3746005	C	T	1840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.351;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.591;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.967;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:299,113:0.27:412
chr19	40721877	rs8106744	G	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	40723747	rs73933218	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:65,37:0.36:102
chr19	40742320	rs2304189	T	C	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=2.611;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.80;ReadPosRankSum=-0.442;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:143,63:0.31:206
chr19	40743739	.	G	A	192	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=3;MMLQ=27;MQ=60.0;NF=13;NR=0;PP=192;QD=17.4439394267;SC=GGAGCCTGGCGAATGAGGGCA;SbPval=1.0;Source=Platypus;TC=38;TCF=35;TCR=3;TR=13;WE=40743747;WS=40743729;set=Platypus	GT:AD:AF:DP	1/0:25,13:0.34:38
chr19	40744697	rs3730051	T	C	8963.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:146,397:0.73:543
chr19	40761212	rs3730256	G	A	1117.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:109,57:0.34:166
chr19	40770982	rs3730050	T	C	40.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	40788442	rs73933241	T	G	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.46;ReadPosRankSum=-1.893;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:29,16:0.36:45
chr19	40788641	rs11880261	T	C	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.87;ReadPosRankSum=-0.890;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:38,26:0.41:64
chr19	40839664	rs8103796	A	C	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	40854331	rs10414431	A	T	7648.77	.	AC=1;AF=0.500;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	0/1:145,330:0.69:475
chr19	40854432	rs11667768	C	T	8215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412;ClippingRankSum=0.000;DB;DP=922;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.94;ReadPosRankSum=1.198;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:652,267:0.29:919
chr19	40854454	rs11667774	C	G	7809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.603;ClippingRankSum=0.000;DB;DP=844;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.29;ReadPosRankSum=0.692;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:602,239:0.28:841
chr19	40875800	rs3745198	C	G	696.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.025;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.54;ReadPosRankSum=-2.768;SOR=0.814;set=HC	GT:AD:AF:DP	0/1:52,21:0.29:73
chr19	40875810	rs3745199	C	G	728.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.78;ReadPosRankSum=0.277;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:60,23:0.28:83
chr19	40883844	rs45469694	A	C	15955.77	.	AC=2;AF=1.00;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	1/1:4,610:0.99:614
chr19	40884160	rs4635	G	A	16897.77	.	AC=2;AF=1.00;AN=2;DB;DP=632;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr19	40886223	rs56237517	G	A	6924.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:145,310:0.68:455
chr19	40900865	rs268674	C	T	7865.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	40901604	rs268672	A	G	5074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=1.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.29;ReadPosRankSum=-1.218;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:64,129:0.67:193
chr19	40901614	rs268671	A	G	5215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=2.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.44;ReadPosRankSum=-2.604;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:67,138:0.67:205
chr19	40928944	rs4150992	A	G	6537.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:177,311:0.64:488
chr19	40929363	rs268687	T	C	2717.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:72,128:0.64:200
chr19	40929553	rs268686	G	C	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:9,25:0.74:34
chr19	40947305	rs7259644	A	T	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr19	40947373	rs10560834	GGATC	G	4115.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:30,102:0.77:132
chr19	40957441	rs373095840	CTT	C	616.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.819;QD=12.85;ReadPosRankSum=-1.480;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:16,32:0.67:48
chr19	40964312	rs1061197	G	A	4789.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:58,212:0.79:270
chr19	40978453	rs34004825	G	A	3192.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:81,147:0.64:228
chr19	41007751	rs45533937	C	T	743.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:17,32:0.65:49
chr19	41007797	rs75996882	GTC	G	1387.73	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:84,40:0.32:124
chr19	41008049	rs814526	A	G	1420.77	.	AC=1;AF=0.500;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	0/1:162,78:0.33:240
chr19	41010047	rs843779	C	G	85.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=2.967;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.55;ReadPosRankSum=0.804;SOR=1.125;set=HC	GT:AD:AF:DP	0/1:133,24:0.15:157
chr19	41012190	rs7258094	C	T	1302.77	.	AC=1;AF=0.500;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	0/1:142,73:0.34:215
chr19	41025243	rs814538	G	A	560.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:72,34:0.32:106
chr19	41030500	rs34804421	G	A	7767.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:168,348:0.67:516
chr19	41034912	rs1461008	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:111,51:0.31:162
chr19	41038574	rs814501	G	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=286;ExcessHet=3.0103;FS=2.163;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.890;SOR=0.852;set=HC	GT:AD:AF:DP	0/1:199,87:0.30:286
chr19	41040334	rs1165858	G	A	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.416;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.10;ReadPosRankSum=0.763;SOR=0.425;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr19	41062902	rs34510741	AC	A	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.598;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=5.604;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.71;ReadPosRankSum=1.459;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:49,15:0.23:64
chr19	41082993	rs35684786	GC	G	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.223;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.590;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.665;QD=3.97;ReadPosRankSum=0.785;SOR=1.436;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr19	41083854	rs61373446	TACAC	T	894.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.287;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.11;ReadPosRankSum=-0.974;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chr19	41103082	.	G	A	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-0.633;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr19	41114065	rs2303728	G	T	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:79,166:0.68:245
chr19	41117624	rs2278246	T	C	1397.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:26,53:0.67:79
chr19	41117869	rs1131620	A	G	4848.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:119,220:0.65:339
chr19	41118056	rs1051303	A	G	4356.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:102,191:0.65:293
chr19	41122671	rs10403963	C	T	1636.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:20,66:0.77:86
chr19	41123093	rs59030801	A	AG	6955.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	41128162	rs12979249	C	T	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	41128309	rs10880	C	T	3460.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:79,157:0.67:236
chr19	41129079	rs11376199	C	CT	911.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=1.838;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.18;ReadPosRankSum=0.456;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:54,73:0.57:127
chr19	41129842	rs7367	C	T	5494.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:106,246:0.70:352
chr19	41131675	rs2278242	C	G	758.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:31,33:0.52:64
chr19	41132022	rs2278243	C	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:22,29:0.57:51
chr19	41133844	rs41512448	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:21,27:0.56:48
chr19	41173880	rs2604901	C	T	3536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.314;ClippingRankSum=0.000;DB;DP=430;ExcessHet=3.0103;FS=0.406;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=7.417;QD=8.89;ReadPosRankSum=0.949;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:288,110:0.28:398
chr19	41173892	rs141662737	CTGCTGT	C	1538.73	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:320,106:0.25:426
chr19	41175996	rs149436869	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:43,26:0.38:69
chr19	41192610	rs112258640	T	TTGAG	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=0.741;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chr19	41206208	rs2246095	A	G	1649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.766;ClippingRankSum=0.000;DB;DP=371;ExcessHet=3.0103;FS=6.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.48;ReadPosRankSum=-1.124;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:260,108:0.29:368
chr19	41209477	rs11538385	C	T	571.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:82,35:0.30:117
chr19	41211056	rs3865452	T	C	1369.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:32,64:0.67:96
chr19	41219781	.	C	CA	139.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=6.913;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.644;QD=3.41;ReadPosRankSum=-1.205;SOR=0.095;set=HC	GT:AD:AF:DP	0/1:25,16:0.39:41
chr19	41250733	rs138724383	G	T	631.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:37,32:0.46:69
chr19	41251180	rs2369302	T	G	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:17,51:0.75:68
chr19	41255500	rs2254343	C	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr19	41257176	rs1457141	G	C	1409.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:23,58:0.72:81
chr19	41265201	rs736625	C	T	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr19	41269076	rs2305797	T	C	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:47,105:0.69:152
chr19	41283365	rs2233159	C	G	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.91;SOR=1.296;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	41306362	rs11547373	G	A	317.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:12,16:0.57:28
chr19	41313202	rs3736329	C	A	8584.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:150,377:0.72:527
chr19	41316355	rs41530251	T	C	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:46,80:0.63:126
chr19	41316370	rs11552615	T	C	1664.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:37,66:0.64:103
chr19	41324832	rs2545773	T	C	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=9.779;MLEAC=1;MLEAF=0.500;MQ=52.57;MQRankSum=-4.704;QD=8.27;ReadPosRankSum=-0.035;SOR=3.426;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr19	41332171	rs78011401	C	T	3558.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:84,159:0.65:243
chr19	41349640	rs7248240	G	C	2520.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:67,107:0.61:174
chr19	41350664	rs1809810	A	T	4466.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.98;QD=26.12;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	41354606	rs4986892	G	T	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.176;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=1.162;MLEAC=1;MLEAF=0.500;MQ=59.04;MQRankSum=-11.624;QD=1.16;ReadPosRankSum=6.725;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:283,54:0.16:337
chr19	41354661	rs79584535	T	C	610.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=5.410;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-7.823;QD=3.39;ReadPosRankSum=-2.761;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:136,44:0.24:180
chr19	41354688	rs148803816	AA	GG	342.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-5.230;QD=3.65;ReadPosRankSum=-4.306;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:79,15:0.16:94
chr19	41354696	.	C	G	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=3.650;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-5.202;QD=1.07;ReadPosRankSum=-3.852;SOR=1.381;set=HC	GT:AD:AF:DP	0/1:71,8:0.10:79
chr19	41354700	.	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.833;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-6.681;QD=0.83;ReadPosRankSum=-2.459;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:67,3:0.04:70
chr19	41354712	rs8192725	A	G	791.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:20,32:0.62:52
chr19	41355849	rs2302990	A	G	770.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712;ClippingRankSum=0.000;DB;DP=323;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.66;MQRankSum=-11.766;QD=2.40;ReadPosRankSum=4.784;SOR=0.721;set=HC	GT:AD:AF:DP	0/1:250,71:0.22:321
chr19	41355896	rs376970015	T	C	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=2.767;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-15.949;QD=1.70;ReadPosRankSum=-5.741;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:209,50:0.19:259
chr19	41356281	rs1137115	T	C	9829.77	.	AC=1;AF=0.500;AN=2;DB;DP=592;MQ=59.93;set=Intersection	GT:AD:AF:DP	0/1:162,429:0.73:591
chr19	41381647	rs12460590	A	C	4948.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	41382607	rs2316206	AG	CA	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.66;QD=44.38;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	41382612	rs2316208	CG	TA	2936.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=57.51;QD=45.89;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	41382645	rs3865455	G	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.62;QD=43.59;SOR=3.086;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	41382653	rs2388869	A	G	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.49;QD=47.69;SOR=3.026;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	41382655	rs2316210	T	G	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.62;QD=45.45;SOR=2.774;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	41382665	rs3852869	G	A	1366.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.15;QD=44.09;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	41383153	rs2261144	A	G	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	41383344	rs2302988	T	C	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	41383378	rs16958956	C	A	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	41383799	rs3869579	G	A	8754.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:2,334:0.99:336
chr19	41384637	rs4079367	C	T	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr19	41384675	rs4079366	T	C	10717.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	41386136	rs4142867	A	C	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	41386282	rs3815705	G	C	3998.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr19	41386420	rs56081734	A	C	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr19	41386486	rs3815708	CA	AG	8004.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=55.26;QD=44.72;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	41386494	rs3815710	A	C	7324.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.71;QD=45.21;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	41386527	rs58798281	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	41386544	rs71337574	C	G	2390.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.50;QD=43.47;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	41386547	rs74219554	G	C	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.13;QD=45.62;SOR=3.215;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr19	41387620	rs10425150	A	G	2108.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.46;QD=30.13;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	41387647	rs10425169	A	G	3065.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.39;QD=43.80;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	41387656	rs10425176	A	T	3090.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.98;QD=44.15;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	41387669	rs10425185	A	G	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	41397370	rs3852870	A	C	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	41397806	rs8106551	C	A	1330.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	41400906	rs10626476	C	CAGAG	3484.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	41400913	rs140473451	AAAAC	A	2657.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	41401950	rs4803398	G	C	2474.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.059;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=3.912;MLEAC=2;MLEAF=1.000;MQ=57.89;MQRankSum=-0.400;QD=25.78;ReadPosRankSum=1.575;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr19	41402162	rs3956342	T	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	41402579	rs6508953	A	G	10372.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:2,385:0.99:387
chr19	41403129	rs10574908	CA	C	732.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.742;QD=7.33;ReadPosRankSum=-1.749;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:26,74:0.74:100
chr19	41403325	rs7252852	T	C	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr19	41403982	rs11083583	G	GT	5415.73	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:4,200:0.98:204
chr19	41404196	rs10419393	A	G	3496.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	41405962	rs4803400	T	G	18336.77	.	AC=2;AF=1.00;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	1/1:0,688:1.00:688
chr19	41414363	rs8100418	A	T	13208.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,542:1.00:544
chr19	41414481	rs72480748	G	A	15473.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr19	41415112	rs3844442	T	A	2809.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	41416750	rs10419589	T	C	1256.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.65;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	41416831	rs146260021	A	AT	248.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=19.13;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	41442597	rs73038469	G	A	1767.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	41447479	rs34151237	T	G	1371.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=51.31;QD=44.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr19	41447486	rs34013487	C	G	1231.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.63;QD=43.99;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	41447492	rs73038475	T	C	1173.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.91;QD=43.47;SOR=1.528;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	41447928	rs3865460	G	A	12998.77	.	AC=2;AF=1.00;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	1/1:0,495:1.00:495
chr19	41512841	rs3745274	G	T	798.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:19,36:0.65:55
chr19	41515263	rs2279343	A	G	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.819;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=17.841;MLEAC=1;MLEAF=0.500;MQ=54.70;MQRankSum=-7.582;QD=4.89;ReadPosRankSum=-3.325;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr19	41515702	rs2279345	T	C	1068.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:20,41:0.67:61
chr19	41518773	rs8192719	C	T	6614.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:204,304:0.60:508
chr19	41558800	rs11083604	T	C	827.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.639;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-0.409;QD=5.27;ReadPosRankSum=-0.209;SOR=0.759;set=HC	GT:AD:AF:DP	0/1:108,49:0.31:157
chr19	41558878	rs56156262	G	A	1264.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:119,71:0.37:190
chr19	41564417	rs12978001	C	A	701.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:40,32:0.44:72
chr19	41622107	rs3833221	G	GC	1738.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.336;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=1.023;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=-0.234;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:246,73:0.23:319
chr19	41622189	rs305968	G	A	2091.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.221;ClippingRankSum=0.000;DB;DP=571;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=1.710;QD=3.69;ReadPosRankSum=2.211;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:422,145:0.26:567
chr19	41622615	rs12975986	C	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:37,26:0.41:63
chr19	41626438	rs34650210	CT	C	384.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.52;ReadPosRankSum=0.392;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:28,31:0.53:59
chr19	41628677	rs305975	T	G	3083.77	.	AC=1;AF=0.500;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	0/1:394,180:0.31:574
chr19	41631415	rs137939255	C	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.084;SOR=0.055;set=HC	GT:AD:AF:DP	0/1:58,13:0.18:71
chr19	41631417	rs144315434	T	C	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.977;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.99;MQRankSum=0.834;QD=9.83;ReadPosRankSum=-0.669;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:46,30:0.39:76
chr19	41700493	rs338599	G	C	13551.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,507:1.00:507
chr19	41703503	rs338595	G	A	63.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:14,5:0.26:19
chr19	41703660	rs338594	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.799;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:62,16:0.21:78
chr19	41704304	rs338593	T	C	1410.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:124,74:0.37:198
chr19	41704832	rs338592	A	G	6102.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	41707094	rs1628289	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:46,24:0.34:70
chr19	41711755	rs338586	G	T	383.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,18:0.42:43
chr19	41711815	rs338585	G	A	1089.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:72,52:0.42:124
chr19	41712113	rs338584	C	G	183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.469;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.22;ReadPosRankSum=-0.058;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr19	41712424	rs338583	A	G	2209.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:294,129:0.30:423
chr19	41725271	rs10411012	A	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:46,22:0.32:68
chr19	41727197	rs2271546	C	T	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:111,47:0.30:158
chr19	41727231	rs3830504	GGGTCAA	G	512.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.12;ReadPosRankSum=-1.780;SOR=0.345;set=HC	GT:AD:AF:DP	0/1:55,17:0.24:72
chr19	41743861	rs7249222	A	G	26699.77	.	AC=2;AF=1.00;AN=2;DB;DP=996;set=Intersection	GT:AD:AF:DP	1/1:0,995:1.00:995
chr19	41748753	rs2304234	T	C	4570.77	.	AC=1;AF=0.500;AN=2;DB;DP=760;set=Intersection	GT:AD:AF:DP	0/1:502,253:0.34:755
chr19	41759474	rs73045223	C	T	2472.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;ClippingRankSum=0.000;DB;DP=526;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.70;ReadPosRankSum=0.472;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:372,154:0.29:526
chr19	41759631	rs3835078	ACCC	A	2622.73	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:50,69:0.58:119
chr19	41759637	rs116056574	C	T	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:60,67:0.53:127
chr19	41811730	rs12745	T	C	6772.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	41858876	rs1800471	C	G	3997.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	0/1:82,186:0.69:268
chr19	41858921	rs1800470	G	A	807.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:129,51:0.28:180
chr19	41863777	rs11668109	A	C	3423.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	41863994	rs73931466	A	G	2631.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:57,117:0.67:174
chr19	41869392	rs2241714	T	C	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	41869468	rs2241713	G	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:77,54:0.41:131
chr19	41869487	rs3217387	C	CA	3841.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	41903675	rs892043	A	G	792.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	41937095	rs17318596	G	A	18737.77	.	AC=2;AF=1.00;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	1/1:0,718:1.00:718
chr19	41939297	rs1043413	C	G	6317.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	41944237	rs2231940	T	C	6407.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	41945837	rs13346603	T	A	8072.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	41945848	rs13344547	G	T	8203.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	41945904	rs13344563	G	C	5237.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	41949870	rs3745286	T	C	461.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr19	42027500	rs4803475	A	G	10157.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	42027514	rs4803476	T	A	9806.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	42083849	rs714106	C	A	6374.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	42085873	rs2302188	A	G	5064.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	42092815	rs3745936	T	A	10369.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	42125660	rs1041994	T	C	2182.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	42125889	rs148066216	T	A	4208.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:106,186:0.64:292
chr19	42126448	rs9967607	T	C	3997.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	42127907	rs4803488	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	42128202	rs8111279	G	A	4300.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	42132314	rs1126454	G	C	5389.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	42188032	rs34670266	GC	G	6245.73	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr19	42190859	rs8102488	A	T	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	42212753	rs111973464	A	AGCACAGAGACTG	9549.73	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	42213744	rs10402825	T	C	16910.77	.	AC=2;AF=1.00;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	1/1:0,648:1.00:648
chr19	42213772	rs12971352	A	G	24528.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.55;QD=43.26;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,567:1.00:567
chr19	42213782	rs28683503	T	C	24149.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.29;QD=43.99;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,549:1.00:549
chr19	42213868	rs34155934	A	G	20430.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.39;QD=44.51;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr19	42213872	rs35091611	T	C	20396.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.79;QD=44.44;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,459:1.00:459
chr19	42221607	rs7249230	A	G	14861.77	.	AC=2;AF=1.00;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr19	42260569	rs1805223	G	A	3639.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;ClippingRankSum=0.000;DB;DP=796;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=59.56;MQRankSum=1.727;QD=4.58;ReadPosRankSum=0.858;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:565,229:0.29:794
chr19	42265866	rs28547939	C	G	2182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.40;ReadPosRankSum=1.320;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:193,67:0.26:260
chr19	42265889	rs11548735	G	T	2694.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=0.445;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.19;ReadPosRankSum=-0.380;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:235,94:0.29:329
chr19	42312933	rs3752172	G	A	2635.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=-0.388;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:394,163:0.29:557
chr19	42341407	rs35476281	G	C	546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.565;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.558;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.93;ReadPosRankSum=0.737;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:103,36:0.26:139
chr19	42342319	rs2290695	A	G	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr19	42342822	rs7252877	T	A	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.222;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=5.842;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.81;ReadPosRankSum=0.108;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	42342923	rs10414356	T	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:60,89:0.60:149
chr19	42343155	rs4130852	G	T	2478.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:65,99:0.60:164
chr19	42343526	rs3922888	G	T	2173.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:29,86:0.75:115
chr19	42354629	rs2305809	T	C	6293.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:121,270:0.69:391
chr19	42400789	rs79725225	C	T	2440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.233;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=6.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.83;ReadPosRankSum=0.461;SOR=1.386;set=HC	GT:AD:AF:DP	0/1:46,99:0.68:145
chr19	42485768	rs34578730	C	T	3344.77	.	AC=1;AF=0.500;AN=2;DB;DP=660;set=Intersection	GT:AD:AF:DP	0/1:458,202:0.31:660
chr19	42489516	rs2217342	A	C	5844.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	42497653	.	G	GCACA	72.86	.	AC=2;AF=1.00;AN=2;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.04;QD=14.57;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	42736267	rs851609	A	G	3555.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	42793590	rs3826706	G	A	3411.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	42799049	rs1052023	C	T	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=536;set=Intersection	GT:AD:AF:DP	0/1:365,169:0.32:534
chr19	42848764	rs874002	A	G	5273.77	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:131,247:0.65:378
chr19	42861475	rs73033434	G	A	348.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr19	42891689	.	C	CG	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.131;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr19	43433570	rs2074857	A	C	3884.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:83,166:0.67:249
chr19	43433805	rs1065178	A	G	5318.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:138,228:0.62:366
chr19	43439793	rs7245978	G	A	12583.77	.	AC=2;AF=1.00;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	1/1:0,454:1.00:454
chr19	43448156	rs55931787	G	A	969.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:54,42:0.44:96
chr19	43519362	rs11083680	C	T	9072.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,331:1.00:331
chr19	43519442	rs10414166	T	C	12279.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	43530379	rs2526716	A	G	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr19	43530390	rs2736151	C	T	2454.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	43530640	rs60941975	GT	G	3549.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	43575874	rs3746096	T	C	892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.850;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.068;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:151,55:0.27:206
chr19	43674107	rs75994827	A	C	570.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:69,30:0.30:99
chr19	43674405	rs59577450	AT	A	371.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr19	43689004	rs2302112	G	A	2919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635;ClippingRankSum=0.000;DB;DP=672;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.543;QD=4.38;ReadPosRankSum=0.527;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:478,188:0.28:666
chr19	43690506	rs8107936	G	C	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr19	43690667	rs12610783	CT	TC	3041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.64;MQRankSum=-3.034;QD=25.56;ReadPosRankSum=-1.138;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:42,77:0.65:119
chr19	43690678	rs12610809	G	A	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.07;MQRankSum=-3.213;QD=26.10;ReadPosRankSum=-0.517;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:37,62:0.63:99
chr19	43690700	rs12609374	T	C	1504.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr19	43708853	.	A	C	200	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=7;HapScore=2;MGOF=54;MMLQ=30;MQ=55.12;NF=2;NR=4;PP=200;QD=39.1285354245;SC=TCTTCCCCCCACGATGACTGT;SbPval=0.65;Source=Platypus;TC=6;TCF=2;TCR=4;TR=6;WE=43708861;WS=43708843;set=Platypus	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	43708926	rs11673307	G	T	1687.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.19;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	43708968	rs11669435	T	C	2011.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=24.53;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	43708978	rs67183694	TC	T	1960.73	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr19	43709072	rs56700032	G	A	436.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr19	43772270	rs3746296	G	T	4654.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:87,207:0.70:294
chr19	43857873	rs45441892	G	C	3812.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	43858317	rs4803613	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr19	43858578	rs77156507	G	A	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:59,109:0.65:168
chr19	43859549	rs1962260	T	C	1124.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	43860048	rs117850879	G	T	1535.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:30,40:0.57:70
chr19	43860053	rs71350665	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:36,29:0.45:65
chr19	43860192	rs71337594	T	G	654.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.50;QD=31.18;SOR=6.184;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	43860251	rs199668750	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.17;QD=42.18;SOR=5.549;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	43860255	rs200662237	T	G	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.11;QD=45.20;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	43864548	rs10425835	C	A	6573.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	43865499	rs71339512	T	C	3480.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.45;QD=26.57;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	43865840	rs28464741	G	T	3126.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.393;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.89;MQRankSum=7.842;QD=25.42;ReadPosRankSum=0.712;SOR=1.052;set=HC	GT:AD:AF:DP	1/1:2,121:0.98:123
chr19	43883124	rs4803622	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	43883313	rs4803623	C	G	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.92;QD=28.04;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	43883366	.	G	A	682.77	.	AC=1;AF=0.500;AN=2;DP=79;set=Intersection	GT:AD:AF:DP	0/1:47,32:0.41:79
chr19	43920443	rs3810375	C	G	3463.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:68,140:0.67:208
chr19	43969757	rs2259013	A	G	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:46,125:0.73:171
chr19	43979589	rs1055099	G	T	6615.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr19	43982338	rs3746004	G	A	417.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:61,26:0.30:87
chr19	43982467	rs2682543	A	G	600.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	43983740	rs1133929	T	C	882.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=14.71;SOR=3.841;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	43991217	rs138387298	C	T	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.912;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-1.517;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:170,48:0.22:218
chr19	43999256	.	A	G	355	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=2;HapScore=2;MGOF=89;MMLQ=22;MQ=55.82;NF=19;NR=9;PP=355;QD=13.9204004481;SC=TGGACTCCTGAGTCTGAGGGA;SbPval=0.08;Source=Platypus;TC=80;TCF=39;TCR=41;TR=28;WE=43999264;WS=43999250;set=Platypus	GT:AD:AF:DP	0/1:52,28:0.35:80
chr19	43999271	.	G	GA	2970	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=3;HapScore=1;MGOF=31;MMLQ=27;MQ=55.8;NF=15;NR=32;PP=2970;QD=20;SC=GAGGGAGGAGGGGCTGGGGCC;SbPval=0.42;Source=Platypus;TC=51;TCF=15;TCR=36;TR=47;WE=43999300;WS=43999261;set=Platypus	GT:AD:AF:DP	1/0:4,47:0.92:51
chr19	43999292	.	G	GGTCTGAGGGAGGAGGAGACTCGGGGCAGGACCCCTGA	3748.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.163;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;MQRankSum=3.792;QD=56.80;ReadPosRankSum=0.589;SOR=1.061;set=HC	GT:AD:AF:DP	1/1:4,62:0.94:66
chr19	43999634	rs1125030	A	C	8359.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr19	44001345	rs7257767	C	T	2413.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.681;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.608;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.63;ReadPosRankSum=-0.247;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:54,111:0.67:165
chr19	44001891	rs2682549	T	C	3390.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	44012005	.	GGCC	AGCC,AGCT	1156	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.25;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=19;MMLQ=25;MQ=56.74;NF=41,8;NR=27,6;PP=1156,52;QD=17.511341361;SC=CAGGAGTCCAGGCCCCCAGCC;SbPval=0.61;Source=Platypus;TC=71;TCF=42;TCR=29;TR=68,14;WE=44012016;WS=44011995;set=Platypus	GT:AF:DP	0/1:0.96:71
chr19	44012005	.	G	GGCCCCCAGCCCCTCCTCCCTCAGACCCAGGAGTCCAA	1273.73	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,0:0:0
chr19	44012008	.	C	CCCCAGCCCCTCCTCCCTCAGACCCAGGAGTCCAAGCT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.44;MQRankSum=-0.715;QD=1.86;ReadPosRankSum=-5.226;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:55,11:0.17:66
chr19	44012880	rs2682578	A	G	2431.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr19	44031370	rs3810380	C	T	630.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:72,31:0.30:103
chr19	44047493	rs367748545	CGT	C,CGTGT	295.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.044;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=-0.125;SOR=0.941;set=HC	GT:AD:AF:DP	1/2:4,9,10:0.39,0.43:23
chr19	44047550	rs3547	T	C	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	44047826	rs2682557	T	A	4253.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	44049861	rs25478	G	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:69,34:0.33:103
chr19	44055644	rs3213368	G	A	3527.77	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:47,152:0.76:199
chr19	44055726	rs25487	T	C	9932.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr19	44055898	rs25486	C	T	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;MQ=60.08;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	44057574	rs1799782	G	A	923.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:127,53:0.29:180
chr19	44079687	rs3213245	G	A	3318.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	44081288	rs2682585	A	G	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	44081499	rs2682586	A	G	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	44082945	rs304731	T	C	3837.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.42;SOR=0.909;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	44098903	rs304726	T	A	1800.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	44098963	rs304725	C	G	926.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:88,49:0.36:137
chr19	44111524	rs146070175	TAC	T	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.349;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=-0.411;QD=1.95;ReadPosRankSum=0.436;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:113,22:0.16:135
chr19	44111568	rs35296355	TAC	T	2604.73	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:187,153:0.45:340
chr19	44117582	rs10410000	T	C	5891.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:123,248:0.67:371
chr19	44118188	rs3815422	A	C	10595.77	.	AC=1;AF=0.500;AN=2;DB;DP=724;set=Intersection	GT:AD:AF:DP	0/1:243,479:0.66:722
chr19	44118353	rs2302421	G	A	11616.77	.	AC=1;AF=0.500;AN=2;DB;DP=720;set=Intersection	GT:AD:AF:DP	0/1:213,505:0.70:718
chr19	44118680	rs1860149	A	G	588.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr19	44130453	rs3746003	G	A	10883.77	.	AC=1;AF=0.500;AN=2;DB;DP=681;set=Intersection	GT:AD:AF:DP	0/1:202,475:0.70:677
chr19	44131297	rs407049	T	C	7456.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	44156472	rs2302524	T	C	3396.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:70,156:0.69:226
chr19	44159489	rs3786953	G	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:60,21:0.26:81
chr19	44248878	rs346532	A	G	103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=0.000;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr19	44254972	rs164070	C	T	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:48,26:0.35:74
chr19	44268555	rs12611024	C	T	137.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=63.66;MQRankSum=3.470;QD=6.26;ReadPosRankSum=-2.362;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr19	44268654	rs12609587	T	C	685.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr19	44268678	rs12611034	C	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.578;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=3.770;QD=8.83;ReadPosRankSum=-0.240;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:48,22:0.31:70
chr19	44268730	rs145810077	TGTC	T	417.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:38,15:0.28:53
chr19	44273516	rs347519	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.484;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=5.754;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=2.607;SOR=1.473;set=HC	GT:AD:AF:DP	0/1:77,21:0.21:98
chr19	44274041	rs2306799	G	A	922.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:102,50:0.33:152
chr19	44276370	rs3760979	A	G	272.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:49,17:0.26:66
chr19	44278779	rs649540	T	G	3816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;ClippingRankSum=0.000;DB;DP=296;ExcessHet=3.0103;FS=3.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.89;ReadPosRankSum=-1.535;SOR=0.500;set=HC	GT:AD:AF:DP	0/1:185,111:0.38:296
chr19	44278779	.	TAG	GAA	2458	.	AC=1;AF=0.500;AN=2;BRF=0.23;FR=0.5000;HP=2;HapScore=1;MGOF=1;MMLQ=20;MQ=59.99;NF=47;NR=42;PP=2458;QD=28.218740167;SC=CAGCTGCCGGTAGGGGGCCAA;SbPval=0.41;Source=Platypus;TC=273;TCF=134;TCR=139;TR=89;WE=44278789;WS=44278769;set=Platypus	GT:AD:AF:DP	1/0:184,89:0.33:273
chr19	44278781	rs563995	G	A	3816.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=3.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.07;ReadPosRankSum=-1.146;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:185,107:0.37:292
chr19	44280837	rs514328	G	A	2333.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	44280869	.	A	AT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.121;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=1.269;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.10;ReadPosRankSum=0.803;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr19	44280980	rs35773079	T	G	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,9:0.38:24
chr19	44302624	rs349053	T	C	8246.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:150,369:0.71:519
chr19	44303066	rs11547806	C	G	2135.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:25,94:0.79:119
chr19	44306358	.	A	AGCCCCTCCTCCCTC	743.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DP=171;ExcessHet=3.0103;FS=2.160;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-4.171;QD=4.51;ReadPosRankSum=-0.432;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:148,17:0.10:165
chr19	44306359	.	A	AGACCCAGGAGTCCAGGCCCCCAG	737.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.702;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=10.171;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=-3.871;QD=4.34;ReadPosRankSum=-1.296;SOR=1.304;set=HC	GT:AD:AF:DP	0/1:150,20:0.12:170
chr19	44306389	rs72214885	GCCCCCA	G	7968.73	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:78,197:0.72:275
chr19	44306482	rs11879355	C	T	2559.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;MQ=60.04;set=Intersection	GT:AD:AF:DP	0/1:367,156:0.30:523
chr19	44306576	rs62116993	G	T	1357.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:195,83:0.30:278
chr19	44351107	rs10421861	G	A	994.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:25,45:0.64:70
chr19	44351166	rs79626467	GGGAGAT	G	4761.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:77,122:0.61:199
chr19	44351694	rs2195980	C	T	11757.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,448:1.00:448
chr19	44351836	rs957569	G	A	7202.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr19	44352639	rs1061768	G	A	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.942;ClippingRankSum=0.000;DB;DP=246;ExcessHet=3.0103;FS=2.512;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=-0.516;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:176,69:0.28:245
chr19	44352665	rs2356437	T	C	7988.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.41;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	44352665	.	TG	CA,CG	1710	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.19;FR=0.5000,0.5000;HP=1;HapScore=1;MGOF=12;MMLQ=25;MQ=60.0;NF=50,75;NR=69,105;PP=1710,586;QD=14.819057772;SC=GACCTTTACTTGTGGCTCAAA;SbPval=0.5;Source=Platypus;TC=180;TCF=75;TCR=105;TR=119,180;WE=44352674;WS=44352655;set=Platypus	GT:AF:DP	0/1:0.66:180
chr19	44352666	rs1061769	G	A	3214.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=204;ExcessHet=3.0103;FS=0.564;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.76;ReadPosRankSum=1.362;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:65,139:0.68:204
chr19	44352688	rs2883946	G	A	2497.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:47,106:0.69:153
chr19	44376681	rs1050054	G	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.27;ReadPosRankSum=-0.583;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:82,26:0.24:108
chr19	44377357	rs239942	C	T	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr19	44377669	rs12977303	G	A	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:178,92:0.34:270
chr19	44417575	rs417699	A	G	2066.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:284,120:0.30:404
chr19	44418077	rs407731	C	T	2451.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:217,131:0.38:348
chr19	44418343	rs406968	C	T	1299.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=2.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-0.763;SOR=0.774;set=HC	GT:AD:AF:DP	0/1:216,81:0.27:297
chr19	44418544	rs425221	A	G	1970.77	.	AC=1;AF=0.500;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	0/1:232,112:0.33:344
chr19	44418680	rs388685	G	C	3911.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:258,115:0.31:373
chr19	44418693	rs388706	T	C	3972.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:268,122:0.31:390
chr19	44418824	rs399098	C	T	1492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=322;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.302;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:232,90:0.28:322
chr19	44419030	rs420242	A	G	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr19	44422982	rs423320	G	A	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.642;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=0.318;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:98,53:0.35:151
chr19	44423195	rs423752	G	A	163.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,11:0.28:40
chr19	44423981	rs384329	T	C	1142.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:134,61:0.31:195
chr19	44426265	rs413093	A	G	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr19	44426467	rs57712519	T	TG	356.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr19	44469577	rs451601	T	G	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	44470189	rs454301	T	A	16198.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr19	44470420	rs439676	T	C	10992.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr19	44470548	rs453640	A	G	13898.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr19	44470663	rs435590	G	C	21254.77	.	AC=2;AF=1.00;AN=2;DB;DP=801;set=Intersection	GT:AD:AF:DP	1/1:0,796:1.00:796
chr19	44471072	rs137927960	C	T	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=1.452;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.23;ReadPosRankSum=0.509;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:157,37:0.19:194
chr19	44471209	rs365745	T	A	4048.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:83,177:0.68:260
chr19	44471252	rs61734609	T	C	1980.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:255,112:0.31:367
chr19	44471323	rs366111	G	A	5319.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:95,234:0.71:329
chr19	44471632	rs56887248	CT	C	278.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.489;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=-1.361;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:12,25:0.68:37
chr19	44500478	rs398235	A	T	6297.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	44500761	rs448921	G	A	15963.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr19	44501116	rs388812	A	G	14097.77	.	AC=2;AF=1.00;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr19	44501227	rs388471	A	G	10280.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,370:1.00:370
chr19	44501627	rs35292176	T	C	1288.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	44503379	rs452554	C	T	2318.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	44503541	rs11314755	TA	T	1753.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	44503557	.	C	A	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.264;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=0.621;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:32,14:0.30:46
chr19	44503569	rs7252394	G	A	1028.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	44503607	rs7253205	T	C	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr19	44511202	rs2356549	A	T	13029.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr19	44511223	rs424147	T	G	13549.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr19	44511389	rs2191566	G	T	3563.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	44530390	rs8101750	T	C	4097.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	44530444	rs3830527	GAC	G	2034.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	44535999	rs7258517	G	T	8488.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr19	44564401	rs12610472	T	C	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr19	44564981	rs3826941	G	A	13136.77	.	AC=2;AF=1.00;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	1/1:2,487:1.00:489
chr19	44565125	rs4502339	A	G	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	44570393	rs6509138	C	A	5857.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr19	44570551	rs4375771	G	A	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	44571154	rs4433920	T	C	9061.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:1,327:1.00:328
chr19	44580440	rs201907991	CT	C	526.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=2.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.249;SOR=0.480;set=HC	GT:AD:AF:DP	0/1:126,66:0.34:192
chr19	44580758	rs57895932	T	C	1048.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	44585159	rs4803674	T	A	11045.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr19	44586076	rs4553729	T	C	6517.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr19	44589999	rs139900131	TCTC	T	14552.73	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	44590558	rs7255701	C	T	7192.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr19	44591360	rs8113249	G	A	1851.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:42,80:0.66:122
chr19	44604914	rs62115526	T	C	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:112,210:0.65:322
chr19	44610665	rs2068061	A	G	6299.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:149,279:0.65:428
chr19	44610798	rs4239529	A	T	5801.77	.	AC=1;AF=0.500;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	0/1:140,253:0.64:393
chr19	44611066	rs7508149	T	C	10716.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:243,476:0.66:719
chr19	44611420	rs4508518	A	G	10275.77	.	AC=1;AF=0.500;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	0/1:177,440:0.71:617
chr19	44612005	rs3746321	A	G	5919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=1.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.19;ReadPosRankSum=-0.909;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:75,151:0.67:226
chr19	44612014	rs3200505	A	T	5951.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.965;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=-1.993;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:69,152:0.69:221
chr19	44612231	rs3746319	A	G	3111.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:59,135:0.70:194
chr19	44634903	rs10413195	A	G	1181.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:15,44:0.75:59
chr19	44653084	rs113757822	G	A	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:211,86:0.29:297
chr19	44662274	rs35483237	T	TA	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=1.306;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=-3.062;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:65,18:0.22:83
chr19	44676148	rs2232801	G	C	6427.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr19	44677233	rs12459795	A	G	4028.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	44721699	rs9304640	C	T	10526.77	.	AC=2;AF=1.00;AN=2;DB;DP=394;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	44739303	rs2279073	T	C	7275.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	44739399	rs2279072	T	C	7517.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	44764064	rs1233444	A	G	6642.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr19	44769974	rs12462723	C	T	2085.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr19	44778405	rs1233428	A	C	8644.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr19	44782962	.	C	CT	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.766;QD=1.94;ReadPosRankSum=1.588;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr19	44792701	rs2125579	T	G	8179.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chr19	44792969	rs2609908	G	A	3970.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	44807359	rs67283809	GAT	G	911.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	44831570	rs112830799	C	G	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:34,10:0.23:44
chr19	44832684	rs2609880	T	G	14059.77	.	AC=2;AF=1.00;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	1/1:0,530:1.00:530
chr19	44832875	rs2722722	A	G	11128.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:1,414:1.00:415
chr19	44832992	rs2722723	C	G	7857.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr19	44833506	rs4325673	C	T	9200.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr19	44833851	rs4280359	G	C	4840.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	44840789	rs2571104	T	C	4086.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	44845385	rs74260472	C	T	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr19	44847480	rs5828194	GA	G	11701.73	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr19	44890697	rs1836280	A	G	10777.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,394:1.00:394
chr19	44890801	rs12610859	T	C	13031.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr19	44891784	rs2571089	T	C	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr19	44892206	rs73557001	C	A	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058;ClippingRankSum=0.000;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.00;MQRankSum=-19.231;QD=0.55;ReadPosRankSum=0.259;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:464,60:0.11:524
chr19	44892225	rs114985922	T	G	807.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-20.324;QD=1.49;ReadPosRankSum=-0.308;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:485,56:0.10:541
chr19	44892228	rs117953191	G	C	801.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.381;ClippingRankSum=0.000;DB;DP=537;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-20.147;QD=1.49;ReadPosRankSum=-0.635;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:483,54:0.10:537
chr19	44892333	rs2571090	A	T	4001.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	44896422	rs113776138	G	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.126;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:49,17:0.26:66
chr19	44896487	rs2571123	G	C	5940.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	44896857	rs2571122	G	A	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;MQ=59.66;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	44898575	rs56836152	T	TA	41.75	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chr19	44898662	rs2571124	C	T	394.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.22;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr19	44901526	rs2722650	A	G	1638.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr19	44901557	rs2722651	A	G	1037.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr19	44932972	rs1434579	C	T	10152.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr19	44933947	rs12151338	G	A	7676.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr19	44934489	rs2571174	G	A	7127.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	44972036	rs139713518	C	T	2024.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:44,81:0.65:125
chr19	45004042	rs12459496	T	C	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:24,72:0.75:96
chr19	45004305	rs12977470	G	C	13892.77	.	AC=1;AF=0.500;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	0/1:270,627:0.70:897
chr19	45015596	rs1004605	T	G	3005.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:56,135:0.71:191
chr19	45016116	rs8100718	A	G	1744.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:52,85:0.62:137
chr19	45016990	rs5828200	CT	C	7721.73	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	45017477	rs10706694	TA	T	6420.73	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr19	45017486	rs4802229	T	C	1707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.216;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.785;QD=11.78;ReadPosRankSum=1.826;SOR=0.901;set=HC	GT:AD:AF:DP	0/1:54,91:0.63:145
chr19	45017503	rs35128033	CT	C	368.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=2.175;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=10.24;ReadPosRankSum=1.433;SOR=1.545;set=HC	GT:AD:AF:DP	0/1:6,30:0.83:36
chr19	45033379	rs71940010	GCA	G	1245.73	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:123,74:0.38:197
chr19	45117157	rs140929931	C	T	2985.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:68,121:0.64:189
chr19	45121297	rs17658507	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.29;ReadPosRankSum=-0.297;SOR=0.725;set=HC	GT:AD:AF:DP	0/1:73,27:0.27:100
chr19	45121424	rs10412507	G	A	3976.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:96,179:0.65:275
chr19	45126994	rs846857	A	G	9807.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr19	45138648	rs140576977	TTC	T	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.40;ReadPosRankSum=0.331;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr19	45138676	rs375878000	GTC	G	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.980;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.368;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chr19	45147340	rs11540084	G	T	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.630;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.130;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=0.868;SOR=0.426;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr19	45147518	rs5828211	C	CA	16876.73	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	45147542	rs439446	T	C	15877.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr19	45147576	rs5828212	CG	C	8378.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	45157113	rs71171278	A	AG	28316.73	.	AC=2;AF=1.00;AN=2;DB;DP=726;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr19	45161895	rs80332649	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:34,12:0.26:46
chr19	45162038	rs203710	A	G	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	45202701	rs199957735	C	CT	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=8.766;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.50;ReadPosRankSum=0.000;SOR=0.111;set=HC	GT:AD:AF:DP	0/1:54,12:0.18:66
chr19	45203837	rs2919848	G	C	1784.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr19	45206532	rs2965167	G	A	1696.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	45213701	rs57684876	C	T	13951.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr19	45251156	rs2965169	A	C	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	45287546	.	C	G	1042.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DP=349;ExcessHet=3.0103;FS=0.971;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=0.489;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:269,80:0.23:349
chr19	45322744	rs1135062	A	G	16345.77	.	AC=2;AF=1.00;AN=2;DB;DP=617;set=Intersection	GT:AD:AF:DP	1/1:0,616:1.00:616
chr19	45349963	rs2306149	C	A	6266.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:4,271:0.99:275
chr19	45385759	rs3745150	G	C	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:3,7:0.70:10
chr19	45389224	rs283814	A	G	11127.77	.	AC=1;AF=0.500;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	0/1:283,524:0.65:807
chr19	45404431	rs741780	TG	CA	4702.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;JOINED;set=Intersection	GT:AD:AF:DP	0/1:62,118:0.66:180
chr19	45404691	rs405697	A	G	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:51,98:0.66:149
chr19	45409167	rs440446	C	G	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:14,32:0.70:46
chr19	45430280	rs5112	C	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:57,37:0.39:94
chr19	45448036	rs1132899	T	C	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.51;ReadPosRankSum=-1.353;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:71,42:0.37:113
chr19	45448465	rs5167	T	G	3633.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.699;ClippingRankSum=0.000;DB;DP=820;ExcessHet=3.0103;FS=0.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.341;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:577,239:0.29:816
chr19	45451620	rs5120	T	A	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:94,40:0.30:134
chr19	45451656	rs10422603	T	G	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:159,81:0.34:240
chr19	45452335	rs4803776	T	C	470.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.144;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=4.907;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-3.925;QD=3.44;ReadPosRankSum=0.060;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:104,33:0.24:137
chr19	45458146	rs3760629	A	C	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr19	45458212	rs117316645	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.479;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=4.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=-0.615;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:50,16:0.24:66
chr19	45458235	rs41334244	A	G	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.984;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.13;ReadPosRankSum=0.105;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:71,24:0.25:95
chr19	45476422	rs204481	T	C	9520.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,353:1.00:353
chr19	45476504	rs73558179	T	G	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:91,45:0.33:136
chr19	45477910	rs11318909	CT	C	4278.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	45488434	rs204472	A	G	3227.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	45488567	rs204471	T	C	6435.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr19	45489548	rs58800134	A	AG	3340.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr19	45490428	rs7257610	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=635;set=Intersection	GT:AD:AF:DP	0/1:434,201:0.32:635
chr19	45490570	rs3786505	A	G	3070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.019;ClippingRankSum=0.000;DB;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=2.252;SOR=0.726;set=HC	GT:AD:AF:DP	0/1:580,205:0.26:785
chr19	45490636	rs204468	T	C	5628.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:145,262:0.64:407
chr19	45490702	rs150554721	C	T	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	0/1:109,172:0.61:281
chr19	45493635	rs875255	C	G	3862.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr19	45494247	rs11405080	A	AC	13399.73	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr19	45494349	rs11333249	TC	T	3139.73	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	45495682	rs2075619	A	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:118,58:0.33:176
chr19	45496303	rs9193	T	C	5653.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:1,220:1.00:221
chr19	45506732	rs145291152	CAAA	C	1568.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.241;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=15.762;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.815;QD=24.51;ReadPosRankSum=0.371;SOR=1.406;set=HC	GT:AD:AF:DP	1/1:7,57:0.89:64
chr19	45506772	rs7251460	T	A	5127.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.463;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=3.078;MLEAC=2;MLEAF=1.000;MQ=60.10;MQRankSum=0.083;QD=26.30;ReadPosRankSum=-0.160;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,194:0.99:195
chr19	45513146	rs150557566	GGCCTTC	G	1601.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=43.29;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	45515055	rs371559143	TGAGAGAGAGA	T	601.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.80;QD=40.12;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	45515067	rs62117220	A	T	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-0.431;QD=15.90;ReadPosRankSum=1.795;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	45515069	rs62117221	A	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.76;QD=41.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	45515071	.	A	T	583.77	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.76;QD=41.70;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	45515073	.	A	T	138.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;ClippingRankSum=-0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQRankSum=0.524;QD=9.25;ReadPosRankSum=0.645;SOR=0.646;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr19	45528799	rs2288918	T	C	6311.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:108,260:0.71:368
chr19	45532009	rs12609547	G	T	1872.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:19,71:0.79:90
chr19	45535672	rs147163954	CA	C	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,28:0.67:42
chr19	45536036	rs10424046	C	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:48,22:0.31:70
chr19	45537417	rs143167603	AAAAT	A	364.73	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr19	45540541	.	GA	G	101.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.253;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.75;ReadPosRankSum=2.406;SOR=1.439;set=HC	GT:AD:AF:DP	0/1:40,18:0.31:58
chr19	45561063	rs4803794	A	G	6715.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,265:0.99:267
chr19	45571781	rs10445571	T	C	1730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.238;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.31;ReadPosRankSum=-1.044;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:289,113:0.28:402
chr19	45571900	rs34337168	G	GCC	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=-1.761;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:54,15:0.22:69
chr19	45571903	rs36097205	G	C	448.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=2.727;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.23;ReadPosRankSum=-1.986;SOR=0.306;set=HC	GT:AD:AF:DP	0/1:56,16:0.22:72
chr19	45572247	.	C	CA	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.945;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.184;MLEAC=1;MLEAF=0.500;MQ=59.76;MQRankSum=0.672;QD=1.91;ReadPosRankSum=1.361;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr19	45643890	rs2041262	T	C	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.29;ReadPosRankSum=1.039;SOR=0.566;set=HC	GT:AD:AF:DP	0/1:124,72:0.37:196
chr19	45643957	rs116863911	C	T	691.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	45644720	rs66519628	AGGAAGAGGCAGCTCAGGCTCCC	A	11507.73	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:123,289:0.70:412
chr19	45649386	rs968445	A	G	4940.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:127,221:0.64:348
chr19	45649503	rs112250728	T	TGTAA	6621.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	45655333	rs28469095	T	C	872.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:63,46:0.42:109
chr19	45662459	rs8109620	G	A	363.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:15,16:0.52:31
chr19	45668327	rs10410833	C	T	1505.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:103,69:0.40:172
chr19	45681560	rs7254936	T	C	12581.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;set=Intersection	GT:AD:AF:DP	1/1:0,485:1.00:485
chr19	45716364	rs189063316	C	T	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr19	45716678	rs346740	G	C	6870.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	45730795	rs141492594	C	T	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:39,24:0.38:63
chr19	45731564	rs56187099	G	A	1418.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:20,56:0.74:76
chr19	45766729	rs7255933	G	A	470.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:56,26:0.32:82
chr19	45781081	rs3046865	TTG	T	188.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=6.193;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.58;ReadPosRankSum=-0.302;SOR=0.073;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr19	45801018	rs173179	T	C	2332.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;ClippingRankSum=0.000;DB;DP=475;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=-2.028;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:331,144:0.30:475
chr19	45801579	rs139000043	GGGTCTGTGCGT	G	1022.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.006;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=9.185;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.696;QD=8.38;ReadPosRankSum=-2.451;SOR=1.880;set=HC	GT:AD:AF:DP	0/1:90,32:0.26:122
chr19	45810035	rs4884	A	G	2628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868;ClippingRankSum=0.000;DB;DP=653;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-0.630;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:471,179:0.28:650
chr19	45815248	rs10402747	T	C	479.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:74,26:0.26:100
chr19	45850598	rs11418793	C	CA	112.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=2.070;QD=1.63;ReadPosRankSum=-1.306;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:50,19:0.28:69
chr19	45853517	.	C	CA	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.535;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=6.067;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=1.473;QD=1.94;ReadPosRankSum=-1.637;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr19	45856468	rs238417	G	C	1733.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:176,95:0.35:271
chr19	45859072	.	C	CT	169.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=0.000;DP=160;ExcessHet=3.0103;FS=1.253;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=2.02;ReadPosRankSum=0.699;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:58,26:0.31:84
chr19	45865002	rs171140	C	A	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	0/1:463,258:0.36:721
chr19	45865191	rs3916823	CTTTT	C	1672.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.045;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=5.557;QD=10.26;ReadPosRankSum=-0.224;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:112,51:0.31:163
chr19	45865217	rs238403	T	C	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.426;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=8.258;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.575;QD=11.50;ReadPosRankSum=0.280;SOR=0.130;set=HC	GT:AD:AF:DP	0/1:55,23:0.29:78
chr19	45867216	rs3916815	T	TG	387.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=0.056;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:89,24:0.21:113
chr19	45868006	rs238405	A	T	617.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:54,32:0.37:86
chr19	45868309	rs238406	T	G	1990.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:217,112:0.34:329
chr19	45868478	rs238407	T	A	1705.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:117,88:0.43:205
chr19	45872036	rs1799783	C	T	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.15;ReadPosRankSum=-2.305;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:55,16:0.23:71
chr19	45872122	rs192705084	C	T	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:51,170:0.77:221
chr19	45873942	rs3810366	G	C	1440.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:123,73:0.37:196
chr19	45909934	rs967591	G	A	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr19	45910003	rs8113779	G	T	1859.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:50,87:0.64:137
chr19	45911309	rs35708119	C	CA	1249.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:37,71:0.66:108
chr19	45911329	rs202063629	AT	CA	4956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=5.449;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.32;ReadPosRankSum=-2.012;SOR=0.354;set=HC	GT:AD:AF:DP	0/1:49,126:0.72:175
chr19	45912002	rs735482	A	C	4325.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:70,199:0.74:269
chr19	45912343	rs762562	A	G	3946.77	.	AC=1;AF=0.500;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	0/1:80,167:0.68:247
chr19	45912406	rs2336219	G	A	5353.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.803;ClippingRankSum=0.000;DB;DP=327;ExcessHet=3.0103;FS=4.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.47;ReadPosRankSum=0.486;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:92,233:0.72:325
chr19	45918849	rs10401261	A	G	515.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:20,27:0.57:47
chr19	45918893	.	C	CAA	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.346;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=3.851;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=4.90;ReadPosRankSum=0.460;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr19	45920264	rs3212967	G	A	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chr19	45922323	rs3212961	G	T	7360.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:117,327:0.74:444
chr19	45923653	rs11615	A	G	7210.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:185,346:0.65:531
chr19	45924362	rs3212948	G	C	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chr19	45924692	rs41542613	G	A	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	45971961	rs2282695	C	G	1540.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.306;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=1.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.52;ReadPosRankSum=0.239;SOR=0.890;set=HC	GT:AD:AF:DP	0/1:42,72:0.63:114
chr19	45972039	rs2282696	A	C	552.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:18,26:0.59:44
chr19	45974369	.	G	A	1652.77	.	AC=1;AF=0.500;AN=2;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,70:0.62:112
chr19	45974593	rs2276469	T	C	1560.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:41,68:0.62:109
chr19	46002719	.	G	C	603.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124;ClippingRankSum=0.000;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-0.083;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:134,42:0.24:176
chr19	46025388	rs2301284	G	A	1242.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	46027681	.	C	CA	330.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=4.200;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.316;QD=3.89;ReadPosRankSum=-0.390;SOR=1.334;set=HC	GT:AD:AF:DP	0/1:52,33:0.39:85
chr19	46027752	rs4802260	C	T	8754.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	46032841	rs12971437	G	C	2605.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	46057081	rs3826860	A	G	9947.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:213,460:0.68:673
chr19	46087812	rs62111684	C	G	1032.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:12,44:0.79:56
chr19	46088060	rs45527139	T	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.411;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.53;ReadPosRankSum=-0.062;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:51,22:0.30:73
chr19	46094597	rs3745820	G	A	9729.77	.	AC=1;AF=0.500;AN=2;DB;DP=651;set=Intersection	GT:AD:AF:DP	0/1:200,450:0.69:650
chr19	46118127	rs3816046	C	T	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	46119867	rs2241722	C	A	5065.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	46121020	rs12985660	T	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	46124950	rs56225956	C	G	1628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=0.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-0.417;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:277,98:0.26:375
chr19	46125008	.	CT	C	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=3.460;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-2.034;SOR=0.377;set=HC	GT:AD:AF:DP	0/1:90,31:0.26:121
chr19	46127918	rs28365786	A	G	1657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.035;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=2.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-0.060;SOR=1.031;set=HC	GT:AD:AF:DP	0/1:30,80:0.73:110
chr19	46130191	rs1548026	T	G	2162.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	46130218	.	CTTTTTT	C,CTTTTTTT	1214.73	.	AC=1,0;AF=0.500,0.00;AN=2;DP=47;set=Intersection	GT:AF:DP	0/1:0.89:36
chr19	46133251	rs7251952	C	T	10618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=394;ExcessHet=3.0103;FS=1.777;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.95;ReadPosRankSum=1.356;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:125,269:0.68:394
chr19	46133256	rs7252175	G	A	10516.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=0.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.90;ReadPosRankSum=0.867;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:115,262:0.69:377
chr19	46141845	rs12151009	T	C	4643.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:111,212:0.66:323
chr19	46142053	rs7252448	C	T	690.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:110,44:0.29:154
chr19	46145025	rs2286756	G	T	5829.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr19	46148386	rs11670462	C	T	485.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:8,18:0.69:26
chr19	46180150	rs4803846	A	G	4392.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:86,190:0.69:276
chr19	46185217	rs12709891	C	A	3795.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:73,170:0.70:243
chr19	46195051	rs61466254	G	GC	12055.73	.	AC=1;AF=0.500;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	0/1:299,505:0.63:804
chr19	46199106	rs34362798	CT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.67;ReadPosRankSum=1.911;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr19	46204938	rs4803847	C	T	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	46205050	rs4803848	T	C	17887.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,676:1.00:676
chr19	46206098	rs62111730	G	A	9876.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	46206262	rs17850756	G	A	29151.77	.	AC=2;AF=1.00;AN=2;DB;DP=1130;set=Intersection	GT:AD:AF:DP	1/1:0,1124:1.00:1124
chr19	46214684	rs34505186	G	A	2400.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.860;ClippingRankSum=0.000;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.647;QD=17.52;ReadPosRankSum=-0.753;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:39,98:0.72:137
chr19	46214700	rs138545162	TA	T	491.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.227;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=2.298;QD=3.26;ReadPosRankSum=-0.671;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:97,54:0.36:151
chr19	46216642	rs11537711	G	T	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,26:0.27:96
chr19	46238555	rs2041975	T	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:36,14:0.28:50
chr19	46248407	rs10404220	G	A	1328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=-0.099;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:137,75:0.35:212
chr19	46258024	rs918164	A	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:48,34:0.41:82
chr19	46260375	rs4802275	C	T	392.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:53,23:0.30:76
chr19	46262286	rs725660	C	A	9402.77	.	AC=1;AF=0.500;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	0/1:208,434:0.68:642
chr19	46264963	rs12982642	C	T	11710.77	.	AC=1;AF=0.500;AN=2;DB;DP=777;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:242,532:0.69:774
chr19	46265029	rs8112282	C	T	2365.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:259,131:0.34:390
chr19	46265047	rs139434566	A	ATCCAGC	2627.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161;ClippingRankSum=0.000;DB;DP=337;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.357;QD=13.55;ReadPosRankSum=0.210;SOR=0.564;set=HC	GT:AD:AF:DP	0/1:125,69:0.36:194
chr19	46268902	rs2341097	C	T	6524.77	.	AC=1;AF=0.500;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	0/1:132,298:0.69:430
chr19	46269076	rs2014576	G	A	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:227,106:0.32:333
chr19	46269313	rs2014377	G	C	4381.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	46274171	rs635299	A	C	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.226;ClippingRankSum=0.000;DB;DP=20;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.102;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr19	46274624	rs146680240	G	A	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.285;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.68;ReadPosRankSum=-0.270;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:81,41:0.34:122
chr19	46274972	rs915915	A	C	2414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=506;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.77;ReadPosRankSum=0.933;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:362,144:0.28:506
chr19	46275976	rs527221	G	C	1533.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:214,88:0.29:302
chr19	46276056	rs16939	C	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:49,20:0.29:69
chr19	46281745	rs1799894	A	G	902.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:174,63:0.27:237
chr19	46282503	rs572634	A	C	2210.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:219,119:0.35:338
chr19	46282890	rs2070737	A	T	1129.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:22,45:0.67:67
chr19	46285362	rs149612963	G	GC	488.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=5.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.77;ReadPosRankSum=0.145;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	46287200	rs617988	C	G	519.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:53,28:0.35:81
chr19	46288706	rs3760843	A	T	801.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	46289392	rs8110017	G	C	7255.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:1,274:1.00:275
chr19	46289503	rs8109951	C	T	6376.77	.	AC=1;AF=0.500;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	0/1:138,288:0.68:426
chr19	46299138	.	T	TCTCCTCGCCCTCCTCCTC	1198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=6.080;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.93;ReadPosRankSum=-0.302;SOR=1.237;set=HC	GT:AD:AF:DP	0/1:140,33:0.19:173
chr19	46313825	rs10407137	A	T	4944.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:103,218:0.68:321
chr19	46318963	rs3810331	C	A	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:44,107:0.71:151
chr19	46320041	rs74821481	G	T	1213.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:25,48:0.66:73
chr19	46326200	rs12976060	A	G	1358.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:27,59:0.69:86
chr19	46327166	rs11671524	G	A	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:54,86:0.61:140
chr19	46327185	rs7252416	G	C	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:36,59:0.62:95
chr19	46327209	rs11284049	CT	C	1334.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:13,41:0.76:54
chr19	46329438	rs7246155	G	A	1282.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:21,53:0.72:74
chr19	46329781	rs28362500	GT	G	1080.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:26,32:0.55:58
chr19	46331302	rs4239535	C	G	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:15,50:0.77:65
chr19	46332194	rs3745929	C	T	1320.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:43,56:0.57:99
chr19	46333632	rs4516331	G	A	1217.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:15,46:0.75:61
chr19	46334955	rs4803866	C	T	2080.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:42,91:0.68:133
chr19	46338492	rs7256192	G	A	2526.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:51,113:0.69:164
chr19	46341824	rs17850110	C	T	1393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.250;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=2.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.33;ReadPosRankSum=0.129;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:233,89:0.28:322
chr19	46345782	rs145931067	A	AC	247.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:36,11:0.23:47
chr19	46350960	rs3745928	A	G	494.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:31,24:0.44:55
chr19	46352122	rs2303014	A	G	707.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:108,43:0.28:151
chr19	46352203	rs2303013	C	T	436.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:40,24:0.38:64
chr19	46357313	rs11670136	T	C	937.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:97,49:0.34:146
chr19	46357811	rs2287718	C	A	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:140,58:0.29:198
chr19	46366279	rs34086257	C	G	7210.77	.	AC=1;AF=0.500;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	0/1:126,349:0.73:475
chr19	46367703	rs11667582	T	C	373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.379;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.857;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:31,19:0.38:50
chr19	46367901	rs1363538	T	C	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	46367945	rs3810329	G	C	502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.588;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.965;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.73;ReadPosRankSum=-1.437;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:37,28:0.43:65
chr19	46375779	rs16980091	C	T	1901.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:266,113:0.30:379
chr19	46387344	rs11550348	G	A	3437.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:82,156:0.66:238
chr19	46387503	rs3745926	T	C	6529.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:152,297:0.66:449
chr19	46394100	rs142323830	C	T	1910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.483;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=0.000;QD=14.26;ReadPosRankSum=0.514;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:54,80:0.60:134
chr19	46394322	rs114387602	G	A	1133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=5.288;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.75;ReadPosRankSum=0.127;SOR=0.269;set=HC	GT:AD:AF:DP	0/1:23,49:0.68:72
chr19	46404579	rs10423899	A	G	4868.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=0.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.34;ReadPosRankSum=-0.567;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:87,211:0.71:298
chr19	46417429	rs66529687	G	A	502.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr19	46443739	rs28742045	T	G	6576.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	46443886	rs1047061	C	A	2297.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:37,91:0.71:128
chr19	46498353	rs892217	C	G	1720.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:129,93:0.42:222
chr19	46498827	rs746401	G	A	1241.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.42;ReadPosRankSum=-1.266;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:13,34:0.72:47
chr19	46498835	rs55951953	C	T	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.12;ReadPosRankSum=-0.473;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,28:0.72:39
chr19	46511548	rs2287305	T	C	2815.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	46511617	rs9676886	C	T	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:8,9:0.53:17
chr19	46518576	rs74378972	C	T	1823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.236;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.86;ReadPosRankSum=-0.703;SOR=0.489;set=HC	GT:AD:AF:DP	0/1:31,84:0.73:115
chr19	46520026	rs2287306	A	G	1289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=1.403;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=-2.312;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:294,96:0.25:390
chr19	46520728	rs11669048	G	C	1047.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	46522069	rs117762879	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:26,6:0.19:32
chr19	46543249	rs756401	T	C	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr19	46544307	rs138465035	T	TA	2898.73	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:24,90:0.79:114
chr19	46640551	rs1990765	C	A	9129.77	.	AC=1;AF=0.500;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	0/1:192,410:0.68:602
chr19	46640903	rs73048040	A	T	1853.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:48,83:0.63:131
chr19	46652136	rs2302789	A	G	1937.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:52,88:0.63:140
chr19	46663890	rs114285863	A	G	5720.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:100,264:0.73:364
chr19	46664168	rs2270403	G	A	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:193,90:0.32:283
chr19	46664400	rs10408162	A	G	2862.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:46,123:0.73:169
chr19	46664561	rs73048066	A	G	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.016;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=9.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.93;ReadPosRankSum=-0.896;SOR=2.737;set=HC	GT:AD:AF:DP	0/1:12,22:0.65:34
chr19	46800406	rs199501715	T	C	479.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.252;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=1.037;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.57;ReadPosRankSum=0.177;SOR=0.484;set=HC	GT:AD:AF:DP	0/1:32,24:0.43:56
chr19	46811857	rs73059757	C	T	342.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr19	46811984	rs2311054	A	G	1427.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.42;ReadPosRankSum=0.432;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:31,68:0.69:99
chr19	46812126	rs757638	A	G	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:12,26:0.68:38
chr19	46815297	rs8101216	T	C	8626.77	.	AC=1;AF=0.500;AN=2;DB;DP=596;set=Intersection	GT:AD:AF:DP	0/1:214,379:0.64:593
chr19	46815499	rs8101480	T	C	13298.77	.	AC=1;AF=0.500;AN=2;DB;DP=924;MQ=60.01;set=Intersection	GT:AD:AF:DP	0/1:312,609:0.66:921
chr19	46815705	rs3752207	A	C	12695.77	.	AC=1;AF=0.500;AN=2;DB;DP=911;set=Intersection	GT:AD:AF:DP	0/1:320,587:0.65:907
chr19	46815969	rs146459631	G	GGTGTGTGT	635.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chr19	46856963	rs917947	G	A	5858.77	.	AC=1;AF=0.500;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	0/1:170,270:0.61:440
chr19	46857015	rs917948	C	T	9712.77	.	AC=1;AF=0.500;AN=2;DB;DP=689;set=Intersection	GT:AD:AF:DP	0/1:240,447:0.65:687
chr19	46857286	rs2075144	G	A	179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-1.887;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:55,15:0.21:70
chr19	46886768	rs2072492	G	A	762.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:101,51:0.34:152
chr19	46887007	rs1024781	G	C	14861.77	.	AC=2;AF=1.00;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr19	46890247	rs58701793	G	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr19	46892111	rs759290	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chr19	46892168	rs8106745	T	C	140.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	46893238	rs759291	A	C	19425.77	.	AC=2;AF=1.00;AN=2;DB;DP=734;set=Intersection	GT:AD:AF:DP	1/1:1,731:1.00:732
chr19	46893465	rs2311213	A	G	11316.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	46914547	rs2279517	C	G	2340.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:230,132:0.36:362
chr19	46914921	rs34186470	G	A	8035.77	.	AC=1;AF=0.500;AN=2;DB;DP=498;set=Intersection	GT:AD:AF:DP	0/1:151,346:0.70:497
chr19	46914927	rs75175362	C	T	2890.77	.	AC=1;AF=0.500;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	0/1:356,156:0.30:512
chr19	46972967	rs2288916	G	C	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	46974307	rs3826852	C	T	7635.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	47030432	rs3745795	T	C	823.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.501;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.99;ReadPosRankSum=1.199;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:113,52:0.32:165
chr19	47104071	rs116841574	G	A	19792.77	.	AC=1;AF=0.500;AN=2;DB;DP=1292;set=Intersection	GT:AD:AF:DP	0/1:390,899:0.70:1289
chr19	47104535	rs150954567	T	A	65.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.99;ReadPosRankSum=-0.164;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:25,8:0.24:33
chr19	47105585	rs35630463	A	AT	2144.73	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:67,112:0.63:179
chr19	47105716	rs73056645	G	T	629.89	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:3,26:0.90:29
chr19	47109011	rs3729510	T	C	1346.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr19	47111663	rs3729760	T	C	5378.77	.	AC=1;AF=0.500;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	0/1:131,243:0.65:374
chr19	47112648	rs10113	T	C	11281.77	.	AC=1;AF=0.500;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	0/1:197,532:0.73:729
chr19	47112740	rs710889	C	T	3008.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:47,120:0.72:167
chr19	47137162	rs1005774	C	A	1425.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	47153145	.	CAA	C,CA	966.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DP=98;ExcessHet=3.0103;FS=7.927;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.99;ReadPosRankSum=-1.306;SOR=0.913;set=HC	GT:AD:AF:DP	1/2:16,29,43:0.33,0.49:88
chr19	47156201	rs113736578	T	C	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:64,30:0.32:94
chr19	47177913	rs314665	A	G	22919.77	.	AC=2;AF=1.00;AN=2;DB;DP=899;set=Intersection	GT:AD:AF:DP	1/1:0,897:1.00:897
chr19	47193850	rs314671	T	C	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:45,109:0.71:154
chr19	47200618	rs10413222	C	T	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:7,25:0.78:32
chr19	47207964	rs73058662	T	A	1752.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:42,76:0.64:118
chr19	47212593	rs10423365	A	G	4110.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:64,185:0.74:249
chr19	47228985	rs313844	G	C	1101.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.81;SOR=2.753;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	47228990	rs3848529	T	C	428.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.87;ReadPosRankSum=-1.817;SOR=1.358;set=HC	GT:AD:AF:DP	0/1:4,20:0.83:24
chr19	47230627	rs7351078	C	T	2089.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:35,87:0.71:122
chr19	47236268	rs11666600	G	C	8522.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:175,384:0.69:559
chr19	47239919	rs2270685	G	C	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:46,83:0.64:129
chr19	47241659	rs12976352	C	T	914.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chr19	47249296	rs12984041	G	C	357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=12.718;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.34;ReadPosRankSum=-1.290;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	47249707	rs1693994	T	C	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.37;ReadPosRankSum=0.158;SOR=0.250;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	47258842	rs2287717	C	T	7905.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:165,351:0.68:516
chr19	47280789	rs313835	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:13,35:0.73:48
chr19	47282240	rs3745609	A	G	7381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.322;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.75;ReadPosRankSum=0.708;SOR=0.881;set=HC	GT:AD:AF:DP	0/1:78,188:0.71:266
chr19	47282245	rs56385874	C	T	7251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.631;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.48;ReadPosRankSum=-0.257;SOR=0.934;set=HC	GT:AD:AF:DP	0/1:68,178:0.72:246
chr19	47285589	rs1644343	A	C	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,47:0.70:67
chr19	47287169	rs313852	G	A	1155.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:27,50:0.65:77
chr19	47287939	rs313853	T	C	1300.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:28,58:0.67:86
chr19	47342717	rs312186	C	T	328.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:20,19:0.49:39
chr19	47342867	rs312185	A	C	4817.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.346;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=3.033;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=-0.816;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:2,184:0.99:186
chr19	47342929	rs17716171	G	A	1232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.705;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.58;ReadPosRankSum=0.625;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:36,62:0.63:98
chr19	47524151	.	GCC	G	1588.73	.	AC=2;AF=1.00;AN=2;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=35.31;SOR=1.493;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	47524457	.	G	GC	228.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.752;QD=3.41;ReadPosRankSum=0.662;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:49,18:0.27:67
chr19	47542425	rs71353947	C	T	325.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=0.730;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:86,25:0.23:111
chr19	47543774	rs3745615	G	A	8323.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr19	47548327	rs10423289	A	C,T	1882.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=27.29;SOR=2.704;set=HC	GT:AD:AF:DP	1/2:0,26,43:0.38,0.62:69
chr19	47548678	rs889169	G	A	4390.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:50,190:0.79:240
chr19	47549155	rs889170	AT	GC	7437.77	.	AC=1;AF=0.500;AN=2;DB;DP=268;JOINED;set=Intersection	GT:AD:AF:DP	0/1:85,183:0.68:268
chr19	47549791	rs1862499	A	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:58,108:0.65:166
chr19	47549962	rs73566538	G	A	1468.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:162,83:0.34:245
chr19	47584699	rs3745619	C	T	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:10,20:0.67:30
chr19	47585517	rs7250850	G	C	5602.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:109,249:0.70:358
chr19	47585698	rs7251104	G	C	1441.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:21,51:0.71:72
chr19	47587772	rs2303107	G	A	3400.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:73,152:0.68:225
chr19	47588202	rs7248181	G	T	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:41,73:0.64:114
chr19	47588325	rs2287842	G	A	11029.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:217,494:0.69:711
chr19	47597102	rs10408163	T	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chr19	47615559	rs371203061	TTCC	T	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.776;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=7.114;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=2.739;QD=1.41;ReadPosRankSum=-1.684;SOR=1.561;set=HC	GT:AD:AF:DP	0/1:73,10:0.12:83
chr19	47634313	rs177918	T	G	1688.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	47658320	rs11666272	T	C	208.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chr19	47658482	rs11670191	G	A	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.00;ReadPosRankSum=0.999;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:128,48:0.27:176
chr19	47700438	.	C	CA	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=-0.870;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:17,9:0.35:26
chr19	47731829	rs3810294	C	T	218.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:6,10:0.62:16
chr19	47761543	rs2302985	T	C	443.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:43,22:0.34:65
chr19	47761646	rs12985905	G	C	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr19	47763573	rs45591932	C	T	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.353;ClippingRankSum=0.000;DB;DP=301;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.34;ReadPosRankSum=-0.462;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:228,73:0.24:301
chr19	47768128	rs2032811	G	C	1298.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:102,67:0.40:169
chr19	47769839	rs9304666	A	G	91.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.515;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:55,12:0.18:67
chr19	47770015	rs10413121	A	C	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455;ClippingRankSum=0.000;DB;DP=369;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.913;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:269,99:0.27:368
chr19	47773786	rs888838	A	G	894.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;ClippingRankSum=0.000;DB;DP=203;ExcessHet=3.0103;FS=0.584;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.402;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:148,55:0.27:203
chr19	47773973	rs888837	T	C	110.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:17,6:0.26:23
chr19	47774329	rs73570553	T	C	2211.77	.	AC=1;AF=0.500;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	0/1:312,132:0.30:444
chr19	47774447	rs66726054	G	A	3721.77	.	AC=1;AF=0.500;AN=2;DB;DP=696;set=Intersection	GT:AD:AF:DP	0/1:477,216:0.31:693
chr19	47774572	rs60930438	C	T	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:238,101:0.30:339
chr19	47774772	rs888836	T	C	973.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.492;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:173,67:0.28:240
chr19	47774987	.	TGTGCGCGCGCGCGC	T	285	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=3;MGOF=23;MMLQ=23;MQ=56.9;NF=1;NR=18;PP=285;QD=15.1578947368;SC=TGTGTGTGTGTGTGCGCGCGC;SbPval=0.48;Source=Platypus;TC=29;TCF=1;TCR=28;TR=19;WE=47775012;WS=47774975;set=Platypus	GT:AD:AF:DP	1/0:10,19:0.66:29
chr19	47778054	rs34227852	G	GC	1293.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	47778101	rs35912982	T	TC	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	47778221	rs10407367	A	C	1879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.355;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=9.095;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.223;QD=7.09;ReadPosRankSum=2.065;SOR=0.361;set=HC	GT:AD:AF:DP	0/1:158,107:0.40:265
chr19	47778412	rs1055218	G	T	2264.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:174,112:0.39:286
chr19	47823038	rs4467185	G	A	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr19	47823484	rs4804049	T	C	11449.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:1,446:1.00:447
chr19	47823871	rs11880097	G	T	13870.77	.	AC=2;AF=1.00;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr19	47885180	rs889167	A	G	8631.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	47885234	rs113840347	T	C	3592.77	.	AC=1;AF=0.500;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	0/1:407,205:0.33:612
chr19	47916598	rs11673488	C	T	783.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	47922426	rs62130535	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	47933190	rs142312177	A	AG	2561.73	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	47933728	rs8104926	A	G	5553.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	47935352	rs4801722	T	C	9060.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	47944710	rs2254560	T	C	1544.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,65:0.65:100
chr19	47969394	rs12459087	G	A	12519.77	.	AC=1;AF=0.500;AN=2;DB;DP=804;set=Intersection	GT:AD:AF:DP	0/1:245,558:0.69:803
chr19	48182568	rs2911005	C	T	2252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.311;ClippingRankSum=0.000;DB;DP=348;ExcessHet=3.0103;FS=1.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.47;ReadPosRankSum=0.393;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:220,128:0.37:348
chr19	48182946	rs2911006	T	C	1140.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:139,65:0.32:204
chr19	48183114	rs2914438	A	G	815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=0.418;SOR=0.715;set=HC	GT:AD:AF:DP	0/1:204,64:0.24:268
chr19	48184547	rs889337	G	A	2633.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:298,147:0.33:445
chr19	48184642	rs58014830	TG	T	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=2.968;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.32;ReadPosRankSum=-1.195;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:46,22:0.32:68
chr19	48185147	rs2303755	G	A	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.061;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chr19	48197218	rs2914428	A	C	474.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=7.732;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.86;ReadPosRankSum=-0.539;SOR=0.195;set=HC	GT:AD:AF:DP	0/1:54,27:0.33:81
chr19	48198557	rs2241614	G	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-0.780;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:31,7:0.18:38
chr19	48198796	rs2241613	C	G	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:77,27:0.26:104
chr19	48198817	rs2241612	T	A	837.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:57,25:0.30:82
chr19	48198833	rs2241611	G	C	817.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr19	48202125	rs7248050	C	G	2233.77	.	AC=1;AF=0.500;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	0/1:202,101:0.33:303
chr19	48239557	rs11669035	T	G	201.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.579;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=8.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=-0.535;SOR=0.113;set=HC	GT:AD:AF:DP	0/1:39,15:0.28:54
chr19	48244045	rs34197064	C	CT	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:54,24:0.31:78
chr19	48244194	rs7255434	A	G	1467.77	.	AC=1;AF=0.500;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	0/1:197,86:0.30:283
chr19	48244569	rs3745758	G	A	3023.77	.	AC=1;AF=0.500;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	0/1:377,180:0.32:557
chr19	48244692	rs3833256	C	CG	915.73	.	AC=1;AF=0.500;AN=2;DB;DP=113;MQ=60.95;set=Intersection	GT:AD:AF:DP	0/1:69,38:0.36:107
chr19	48250320	rs2334293	G	C	589.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=2.568;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=0.649;SOR=0.463;set=HC	GT:AD:AF:DP	0/1:81,38:0.32:119
chr19	48250414	rs3745756	A	G	177.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chr19	48253579	rs3745754	A	G	3190.77	.	AC=1;AF=0.500;AN=2;DB;DP=578;set=Intersection	GT:AD:AF:DP	0/1:387,187:0.33:574
chr19	48253667	rs3786780	C	G	439.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.339;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=1.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=-0.127;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:110,28:0.20:138
chr19	48254392	rs10402957	T	C	1038.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.11;ReadPosRankSum=-0.327;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:108,62:0.36:170
chr19	48255804	rs1042558	A	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:232,114:0.33:346
chr19	48258551	rs10406879	T	C	903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-1.025;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:178,62:0.26:240
chr19	48258578	rs10405135	A	G	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.141;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=0.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=1.431;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:186,69:0.27:255
chr19	48258717	rs1804994	A	G	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:52,21:0.29:73
chr19	48258772	rs11083895	G	A	314.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.062;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.30;ReadPosRankSum=0.081;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:32,18:0.36:50
chr19	48258826	rs10411523	G	A	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:25,13:0.34:38
chr19	48260079	rs889142	T	C	1191.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:85,53:0.38:138
chr19	48282077	rs111841672	C	CGCAGCGG	1568.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.119;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.70;MQRankSum=6.818;QD=7.33;ReadPosRankSum=0.675;SOR=0.601;set=HC	GT:AD:AF:DP	0/1:162,52:0.24:214
chr19	48282172	rs1862485	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:76,40:0.34:116
chr19	48284025	rs34362700	C	CG	1006.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.614;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=1.381;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.655;QD=6.21;ReadPosRankSum=-1.928;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:113,49:0.30:162
chr19	48377798	.	G	GAAA	237.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.89;ReadPosRankSum=1.173;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:10,10:0.50:20
chr19	48387126	rs145087874	GA	G	466.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chr19	48389425	rs11083907	A	G	9676.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:1,374:1.00:375
chr19	48479839	.	G	GAA	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=5.131;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.78;ReadPosRankSum=-1.901;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:18,6:0.25:24
chr19	48479853	rs66641477	AC	A	41.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.091;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=1.847;SOR=1.659;set=HC	GT:AD:AF:DP	0/1:21,11:0.34:32
chr19	48479854	rs10404937	C	A	300.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.360;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=15.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-1.283;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:16,16:0.50:32
chr19	48484150	rs10422554	G	A	1069.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.962;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.65;ReadPosRankSum=-0.161;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:23,50:0.68:73
chr19	48495128	rs11671612	T	C	2014.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.28;QD=25.83;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	48512121	rs7249129	G	A	233.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-2.136;SOR=0.315;set=HC	GT:AD:AF:DP	0/1:53,16:0.23:69
chr19	48522894	rs2115100	C	G	105.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	48523197	rs2303691	C	A	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:43,17:0.28:60
chr19	48525379	rs11671666	T	C	2413.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:50,106:0.68:156
chr19	48525507	rs2303690	G	A	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=2.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.49;ReadPosRankSum=-0.587;SOR=0.662;set=HC	GT:AD:AF:DP	0/1:197,91:0.32:288
chr19	48533741	rs35341698	T	G	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,50:0.68:74
chr19	48533856	rs35063174	A	G	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:124,240:0.66:364
chr19	48537585	rs3745746	A	G	5889.77	.	AC=1;AF=0.500;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	0/1:127,271:0.68:398
chr19	48537777	rs35163057	GT	G	351.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=4.042;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.35;ReadPosRankSum=0.019;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:10,24:0.71:34
chr19	48543774	rs8102084	C	G	569.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	48543862	rs8105198	G	A	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr19	48543923	rs12982629	C	A	3634.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:87,170:0.66:257
chr19	48544753	rs3745745	G	A	1349.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr19	48551546	rs9226	A	T	267.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:21,12:0.36:33
chr19	48558003	rs744399	A	C	760.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	48558286	rs2307281	G	A	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:20,40:0.67:60
chr19	48558342	rs3217328	TCTCCAGAAGACCC	T	170.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:15,6:0.29:21
chr19	48565468	rs4802425	G	T	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	48571181	rs11564618	G	A	1103.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=0.576;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:94,60:0.39:154
chr19	48581142	rs1019786	C	T	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:15,23:0.61:38
chr19	48581253	rs1019785	C	G	265.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	48598823	rs156631	A	G	788.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.064;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=-2.333;SOR=0.532;set=HC	GT:AD:AF:DP	0/1:123,52:0.30:175
chr19	48598916	rs156632	A	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	48598948	rs3745738	G	A	682.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.43;ReadPosRankSum=-1.586;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:44,37:0.46:81
chr19	48601350	rs251685	T	C	2149.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	48601454	rs251684	T	C	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=25.94;SOR=0.840;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	48601528	rs251683	G	T	5078.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr19	48601593	rs11432234	A	AT	1225.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:3,59:0.95:62
chr19	48602948	rs2303744	T	C	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:82,39:0.32:121
chr19	48608548	rs11564523	C	T	771.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:22,34:0.61:56
chr19	48609601	rs11564519	C	T	1640.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:27,70:0.72:97
chr19	48613544	rs251696	C	A	260.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	48613602	rs138934663	CA	C	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.98;ReadPosRankSum=-0.154;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	48613612	rs146764560	T	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=17.15;ReadPosRankSum=0.931;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	48613624	rs199676177	TA	T	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=16.39;ReadPosRankSum=1.763;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr19	48613788	rs138501838	T	TGCTCCGGAATCCGGTGCGGAGGCTTGG	1420.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	48621036	rs13436	C	G	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:166,80:0.33:246
chr19	48622375	rs3729512	C	T	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:38,60:0.61:98
chr19	48622427	rs20581	A	G	3713.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	48622483	rs156647	A	G	1638.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:152,92:0.38:244
chr19	48622545	rs274883	A	G	3653.77	.	AC=1;AF=0.500;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	0/1:129,178:0.58:307
chr19	48624625	rs153023	C	T	1171.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:190,75:0.28:265
chr19	48630700	rs61230848	GCC	G	3791.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	48631408	rs156641	C	T	369.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.04;ReadPosRankSum=-0.617;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:27,19:0.41:46
chr19	48634298	rs3730994	C	T	1662.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:30,75:0.71:105
chr19	48634319	rs392891	T	A	627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-0.579;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:98,39:0.28:137
chr19	48636534	rs2288883	T	G	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:19,11:0.37:30
chr19	48639235	rs2288882	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr19	48639472	rs3730976	T	C	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.307;ClippingRankSum=0.000;DB;DP=294;ExcessHet=3.0103;FS=1.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.640;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:204,89:0.30:293
chr19	48646732	rs3730938	A	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.996;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.18;ReadPosRankSum=-0.674;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	48646883	rs2288878	T	C	8892.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr19	48646993	rs415465	C	T	11639.77	.	AC=2;AF=1.00;AN=2;DB;DP=452;set=Intersection	GT:AD:AF:DP	1/1:2,444:1.00:446
chr19	48647241	rs3730931	T	C	2550.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:61,117:0.66:178
chr19	48654553	rs20580	G	T	4399.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr19	48657077	.	T	TCACACACACACACACA,TCACACACACA	221	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.37;FR=0.5000,0.5000;HP=1;HapScore=4;MGOF=11;MMLQ=24;MQ=57.05;NF=8,8;NR=1,1;PP=221,106;QD=24.8888888889;SC=CCTCTTGGCTTCACACACACA;SbPval=0.02;Source=Platypus;TC=24;TCF=11;TCR=13;TR=9,9;WE=48657085;WS=48657067;set=Platypus	GT:AF:DP	0/1:0.38:24
chr19	48660243	rs3730867	GAAGGGGCA	G	814.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=40.74;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	48660445	rs274862	T	C	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:14,16:0.53:30
chr19	48664798	rs3730862	G	A	1208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.766;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=0.287;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:179,71:0.28:250
chr19	48665690	rs76360332	CT	C	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.462;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.971;QD=3.03;ReadPosRankSum=1.712;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:16,13:0.45:29
chr19	48668709	rs3730850	A	G	1424.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	48668795	rs3730849	G	A	846.77	.	AC=1;AF=0.500;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	0/1:110,50:0.31:160
chr19	48668830	rs20579	G	A	3257.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=0.553;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.675;QD=15.37;ReadPosRankSum=0.896;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:65,147:0.69:212
chr19	48668966	rs143468290	G	GA,GAA	2487.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.902;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=5.787;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.26;MQRankSum=0.314;QD=23.03;ReadPosRankSum=-0.733;SOR=0.104;set=HC	GT:AD:AF:DP	1/2:3,28,77:0.26,0.71:108
chr19	48673304	rs73574169	T	G	5306.77	.	AC=1;AF=0.500;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	0/1:133,251:0.65:384
chr19	48673458	rs3730840	G	A	9389.77	.	AC=1;AF=0.500;AN=2;DB;DP=1463;set=Intersection	GT:AD:AF:DP	0/1:930,524:0.36:1454
chr19	48685877	rs16981771	G	A	14236.77	.	AC=1;AF=0.500;AN=2;DB;DP=956;set=Intersection	GT:AD:AF:DP	0/1:273,679:0.71:952
chr19	48686072	rs2007182	G	A	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:35,55:0.61:90
chr19	48686098	rs2007183	G	T	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:20,37:0.65:57
chr19	48689859	rs56345112	G	A	1812.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.379;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=0.217;SOR=0.514;set=HC	GT:AD:AF:DP	0/1:32,84:0.72:116
chr19	48695381	rs409135	A	G	326.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:41,18:0.31:59
chr19	48697834	.	C	G	673.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:4,27:0.87:31
chr19	48707401	rs3745717	G	T	756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.894;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=5.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.28;ReadPosRankSum=0.314;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:20,37:0.65:57
chr19	48707581	rs1965759	G	A	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.265;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=1.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.63;ReadPosRankSum=0.532;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:73,33:0.31:106
chr19	48707581	.	GTG	ATA	689	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=22;MQ=60.0;NF=13;NR=15;PP=689;QD=26.5167098165;SC=GATGGAGGGTGTGCCGGAGGA;SbPval=0.37;Source=Platypus;TC=90;TCF=48;TCR=42;TR=28;WE=48707591;WS=48707571;set=Platypus	GT:AD:AF:DP	1/0:62,28:0.31:90
chr19	48707583	rs1965758	G	A	1126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.374;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.94;ReadPosRankSum=-0.035;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:70,33:0.32:103
chr19	48707665	rs2015209	G	A	856.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,37:0.82:45
chr19	48707714	rs2015211	A	T	520.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr19	48709635	rs8110489	G	A	1519.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=0.601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.74;ReadPosRankSum=1.500;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:301,105:0.26:406
chr19	48715153	rs3745718	T	C	1483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.841;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.666;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:213,93:0.30:306
chr19	48715269	rs2008521	T	C	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	48722180	rs10500299	C	T	1877.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;ClippingRankSum=0.000;DB;DP=412;ExcessHet=3.0103;FS=0.578;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.59;ReadPosRankSum=0.705;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:293,116:0.28:409
chr19	48734018	rs2304134	G	A	12249.77	.	AC=2;AF=1.00;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr19	48735287	rs4802448	A	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	48737706	rs2043211	A	T	9238.77	.	AC=2;AF=1.00;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr19	48744025	rs34345721	CA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.591;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=3.774;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.98;ReadPosRankSum=0.458;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:56,23:0.29:79
chr19	48744345	rs16981853	T	C	2678.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr19	48783178	rs71181670	C	CG	4775.73	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:57,146:0.72:203
chr19	48785580	rs34532606	A	G	2202.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:52,97:0.65:149
chr19	48788904	rs140236127	GGAAAGAAA	G	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.400;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=1.396;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-0.221;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:65,16:0.20:81
chr19	48800218	rs10415825	T	C	1212.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr19	48800338	rs7252988	A	G	8284.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:160,394:0.71:554
chr19	48800791	rs2292113	A	G	3914.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:102,173:0.63:275
chr19	48801218	rs12104393	G	A	782.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:17,31:0.65:48
chr19	48801414	rs8111297	G	T	5306.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:149,241:0.62:390
chr19	48801426	rs8111947	T	C	5405.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	0/1:169,247:0.59:416
chr19	48806977	rs2242463	G	A	9206.77	.	AC=1;AF=0.500;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	0/1:184,426:0.70:610
chr19	48807367	rs28582401	C	A	3586.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=3.701;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.16;ReadPosRankSum=0.420;SOR=0.472;set=HC	GT:AD:AF:DP	0/1:55,154:0.74:209
chr19	48830286	rs10415654	T	A	2397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.952;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.18;ReadPosRankSum=-0.846;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:50,108:0.68:158
chr19	48830314	rs78616544	G	A	1630.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:31,72:0.70:103
chr19	48832554	rs8102349	A	G	2354.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:52,101:0.66:153
chr19	48832826	rs10412343	G	A	3256.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:56,131:0.70:187
chr19	48832846	rs71357818	G	A	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:30,96:0.76:126
chr19	48846180	rs12975283	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:9,27:0.75:36
chr19	48846646	rs11672365	C	T	1236.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:48,59:0.55:107
chr19	48848702	.	C	CATTTATTTATTTATTT	1070	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=3;HapScore=1;MGOF=1;MMLQ=26;MQ=62.6;NF=0;NR=30;PP=1070;QD=35.9333333333;SC=CAGATACTTTCATTTATTTAT;SbPval=1.0;Source=Platypus;TC=41;TCF=0;TCR=41;TR=30;WE=48848716;WS=48848692;set=Platypus	GT:AD:AF:DP	0/1:11,30:0.73:41
chr19	48848708	rs112116754	T	TTTAC	1378.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:7,39:0.85:46
chr19	48863386	rs438767	C	T	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.080;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.08;ReadPosRankSum=-0.363;SOR=1.014;set=HC	GT:AD:AF:DP	0/1:109,47:0.30:156
chr19	48863436	rs62619940	G	A	3284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.07;ReadPosRankSum=-0.811;SOR=0.629;set=HC	GT:AD:AF:DP	0/1:68,150:0.69:218
chr19	48867195	rs200498206	T	TGCA	11708.73	.	AC=1;AF=0.500;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	0/1:157,296:0.65:453
chr19	48876661	rs2569713	A	G	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	48893675	rs276701	C	T	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	48893820	.	CAG	C	204.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.111;SOR=0.517;set=HC	GT:AD:AF:DP	0/1:76,15:0.16:91
chr19	48908631	rs34833452	AG	A	5061.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	48922772	rs11302654	CT	C	572.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.984;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.348;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.460;QD=5.45;ReadPosRankSum=0.682;SOR=1.236;set=HC	GT:AD:AF:DP	0/1:52,53:0.50:105
chr19	48923101	rs276709	C	A	902.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.835;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=0.600;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.96;ReadPosRankSum=-0.205;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:129,53:0.29:182
chr19	48924963	rs1654671	G	A	818.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:100,45:0.31:145
chr19	48945236	rs35843733	C	T	584.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:46,26:0.36:72
chr19	48945880	rs62130268	T	C	1346.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	48946405	rs112893228	A	G	107.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.58;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	48949286	rs1643487	G	T	1581.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	48949766	rs929743	C	G	7785.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr19	48954421	rs2302951	G	A	6508.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:120,288:0.71:408
chr19	48954571	rs1799274	A	T	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	48977019	rs1799258	C	T	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	48982289	rs147203128	G	A	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:43,61:0.59:104
chr19	49001600	rs61745738	A	G	13531.77	.	AC=1;AF=0.500;AN=2;DB;DP=845;set=Intersection	GT:AD:AF:DP	0/1:263,578:0.69:841
chr19	49002058	.	CG	C	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;ClippingRankSum=0.000;DP=29;ExcessHet=3.0103;FS=4.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.26;ReadPosRankSum=-0.777;SOR=0.047;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chr19	49003060	rs201659713	C	A	420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=3.167;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.59;ReadPosRankSum=-1.133;SOR=0.289;set=HC	GT:AD:AF:DP	0/1:21,28:0.57:49
chr19	49003280	rs111513753	T	G	929.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:15,43:0.74:58
chr19	49004551	rs55953841	C	T	11000.77	.	AC=1;AF=0.500;AN=2;DB;DP=707;set=Intersection	GT:AD:AF:DP	0/1:214,492:0.70:706
chr19	49006229	rs12462340	G	A	8765.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:177,396:0.69:573
chr19	49090368	rs34482710	T	TA	2086.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:8,100:0.93:108
chr19	49096161	rs16982163	C	A	1428.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:48,62:0.56:110
chr19	49102399	rs1132054	C	T	1542.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:131,84:0.39:215
chr19	49104308	rs1236093	C	T	837.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.162;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=0.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.73;ReadPosRankSum=1.228;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:130,47:0.27:177
chr19	49113919	rs10853802	C	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:24,64:0.73:88
chr19	49114236	rs454715	T	G	644.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:20,26:0.57:46
chr19	49116076	rs2617801	C	G	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr19	49116134	rs2617800	T	G	1558.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:27,64:0.70:91
chr19	49116555	rs368654	A	G	3351.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:92,149:0.62:241
chr19	49141406	rs137896889	AAGAC	A	1673.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=0.798;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	49141532	rs3848543	T	C	213.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	49143025	rs2303147	T	C	3015.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	49148781	rs10426317	C	T	15625.77	.	AC=2;AF=1.00;AN=2;DB;DP=605;set=Intersection	GT:AD:AF:DP	1/1:0,604:1.00:604
chr19	49164952	rs281392	A	G	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.059;ClippingRankSum=0.000;DB;DP=198;ExcessHet=3.0103;FS=1.978;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.028;SOR=0.873;set=HC	GT:AD:AF:DP	0/1:143,55:0.28:198
chr19	49166875	rs371690	G	A	915.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,44:0.43:102
chr19	49168005	rs17851884	G	A	3735.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:65,168:0.72:233
chr19	49168182	rs373002	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chr19	49183705	rs3826846	G	A	1705.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;ClippingRankSum=0.000;DB;DP=395;ExcessHet=3.0103;FS=0.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=0.083;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:285,108:0.27:393
chr19	49206108	rs679574	C	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.551;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=0.581;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chr19	49206145	rs516316	G	C	758.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.716;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=0.669;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.329;SOR=0.576;set=HC	GT:AD:AF:DP	0/1:128,46:0.26:174
chr19	49206172	rs516246	C	T	998.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.789;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=0.694;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:187,66:0.26:253
chr19	49206417	rs492602	A	G	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:179,75:0.30:254
chr19	49206462	rs681343	C	T	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:136,71:0.34:207
chr19	49206603	rs281377	C	T	5562.77	.	AC=1;AF=0.500;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	0/1:139,261:0.65:400
chr19	49206674	rs601338	G	A	1595.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:206,91:0.31:297
chr19	49206985	rs602662	G	A	2684.77	.	AC=1;AF=0.500;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	0/1:312,145:0.32:457
chr19	49207206	rs485186	A	G	2698.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:368,160:0.30:528
chr19	49207255	rs485073	A	G	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.96;ReadPosRankSum=-0.718;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:211,79:0.27:290
chr19	49207257	rs603985	T	C	2599.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.662;ClippingRankSum=0.000;DB;DP=283;ExcessHet=3.0103;FS=1.728;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.541;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:207,76:0.27:283
chr19	49216926	rs281384	A	G	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr19	49217261	rs281385	A	G	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	49217305	rs281386	A	G	906.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr19	49217520	rs281387	T	C	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	49217605	rs281388	T	G	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.723;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	49218060	rs35866622	C	T	388.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.075;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=0.146;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:71,26:0.27:97
chr19	49218111	rs33988101	G	T	1004.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.57;ReadPosRankSum=0.666;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:95,58:0.38:153
chr19	49218430	rs12978750	A	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.165;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-1.402;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:34,8:0.19:42
chr19	49218437	rs12978752	A	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.334;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.966;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chr19	49218602	rs12979278	C	T	1157.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:140,68:0.33:208
chr19	49228272	rs2287921	T	C	284.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.922;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-0.306;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:76,23:0.23:99
chr19	49232226	rs2287922	G	A	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=4.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.41;ReadPosRankSum=0.601;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:117,66:0.36:183
chr19	49232966	.	CTTT	C	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.071;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=1.741;SOR=1.942;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	49244219	rs2307018	CG	AA	2525.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;JOINED;set=Intersection	GT:AD:AF:DP	0/1:51,65:0.56:116
chr19	49246866	rs838147	A	G	2001.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:45,86:0.66:131
chr19	49247601	rs11672046	C	T	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:24,51:0.68:75
chr19	49247693	rs8108136	C	T	2146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.01;ReadPosRankSum=0.553;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:43,100:0.70:143
chr19	49247786	rs8108468	G	A	2583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.82;ReadPosRankSum=0.719;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:65,122:0.65:187
chr19	49247900	rs8111288	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr19	49248569	.	G	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261;ClippingRankSum=0.000;DP=236;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.88;ReadPosRankSum=1.967;SOR=0.672;set=HC	GT:AD:AF:DP	0/1:188,46:0.20:234
chr19	49248640	rs12982115	A	G	2705.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:38,118:0.76:156
chr19	49248730	rs838145	G	A	2189.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:21,81:0.79:102
chr19	49253389	rs4015	C	T	434.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:15,20:0.57:35
chr19	49259529	rs838133	A	G	2922.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:68,127:0.65:195
chr19	49261368	rs739320	T	C	8831.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:238,406:0.63:644
chr19	49299533	rs557106	A	G	1909.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:231,111:0.32:342
chr19	49300605	rs526744	T	C	849.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:113,53:0.32:166
chr19	49303070	rs11548193	G	C	2517.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:278,142:0.34:420
chr19	49334991	rs62127966	C	T	577.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=6.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.96;ReadPosRankSum=0.036;SOR=1.266;set=HC	GT:AD:AF:DP	0/1:105,41:0.28:146
chr19	49336014	.	G	GT	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DP=146;ExcessHet=3.0103;FS=0.832;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-0.436;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:87,29:0.25:116
chr19	49378180	.	AT	A	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.046;ClippingRankSum=0.000;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-1.260;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:127,45:0.26:172
chr19	49378864	rs141370460	C	T	879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.05;ReadPosRankSum=-1.244;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:160,57:0.26:217
chr19	49401205	rs60572211	C	CTTAT,CTTATTTAT	2290.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=123;set=Intersection	GT:AF:DP	1/2:0.35,0.65:54
chr19	49416456	rs2387579	G	A	3357.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:387,195:0.34:582
chr19	49416554	rs5828369	CA	C	3337.73	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:57,167:0.75:224
chr19	49416936	rs746075	C	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	49421829	rs2287834	A	G	4321.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	49421966	rs2287836	T	C	14113.77	.	AC=2;AF=1.00;AN=2;DB;DP=537;set=Intersection	GT:AD:AF:DP	1/1:0,536:1.00:536
chr19	49424354	rs12979307	C	T	2145.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.95;SOR=0.839;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	49424381	rs12979328	C	A	2969.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr19	49424925	rs11671777	C	T	1960.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	49425772	rs1532704	T	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr19	49458262	rs4645881	C	T	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	49459104	rs1805419	A	G	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	49464971	rs704243	G	A	1785.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.88;SOR=2.015;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	49513349	rs2287760	C	G	2049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531;ClippingRankSum=0.000;DB;DP=494;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=-0.611;SOR=0.633;set=HC	GT:AD:AF:DP	0/1:358,135:0.27:493
chr19	49529379	rs7255292	T	C	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.542;MLEAC=1;MLEAF=0.500;MQ=58.91;MQRankSum=-1.170;QD=5.85;ReadPosRankSum=-1.589;SOR=0.381;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr19	49605530	rs10419811	A	G	2731.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr19	49621812	rs138893085	G	A	1986.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:24,78:0.76:102
chr19	49621964	rs2232003	T	C	8548.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:153,399:0.72:552
chr19	49632079	rs4802565	C	A	14347.77	.	AC=1;AF=0.500;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	0/1:301,662:0.69:963
chr19	49632309	rs4802566	T	C	2849.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:50,119:0.70:169
chr19	49632500	rs4802567	C	T	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:23,42:0.65:65
chr19	49632597	rs117665044	T	C	466.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:51,27:0.35:78
chr19	49632772	rs1559155	C	T	944.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.602;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.52;ReadPosRankSum=-0.089;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:35,47:0.57:82
chr19	49636633	rs2287761	G	C	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.70;ReadPosRankSum=0.299;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:21,56:0.73:77
chr19	49638956	rs745124	C	G	5203.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:118,250:0.68:368
chr19	49646006	rs4545921	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr19	49649051	rs3764625	T	G	4715.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:69,189:0.73:258
chr19	49651790	rs4802576	G	A	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chr19	49652128	rs112505587	GT	G	2658.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:29,68:0.70:97
chr19	49652130	rs116573491	G	A	2667.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:29,69:0.70:98
chr19	49655174	rs1423520	A	T	1166.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:28,50:0.64:78
chr19	49661582	rs3760664	T	C	4739.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:80,205:0.72:285
chr19	49685708	rs201110201	CCCAT	C	7336.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:3,174:0.98:177
chr19	49794028	rs45549132	G	T	454.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:53,26:0.33:79
chr19	49797887	rs3214611	TA	T	44.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chr19	49812403	rs2278405	G	T	819.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:62,41:0.40:103
chr19	49838891	rs354020	C	A	21225.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;set=Intersection	GT:AD:AF:DP	1/1:0,795:1.00:795
chr19	49839015	rs354021	T	C	12183.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.710;set=HC	GT:AD:AF:DP	1/1:0,474:1.00:474
chr19	49841054	rs354026	G	T	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr19	49845895	rs8108669	C	T	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:11,14:0.56:25
chr19	49869051	rs2303759	T	G	1263.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=0.981;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.97;ReadPosRankSum=1.036;SOR=0.766;set=HC	GT:AD:AF:DP	0/1:236,82:0.26:318
chr19	49878115	rs1054770	G	A	2124.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:213,117:0.35:330
chr19	49894027	rs61018355	T	TC	2298.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr19	49894028	rs57104627	T	C	2307.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:73,61:0.46:134
chr19	49894152	rs7256629	C	T	666.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:125,43:0.26:168
chr19	49894217	rs7256984	G	T	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=0.264;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:116,45:0.28:161
chr19	49899076	rs10405154	G	A	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=0.427;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr19	49900877	rs9304688	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:125,52:0.29:177
chr19	49901125	rs12977735	C	T	511.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr19	49901318	rs10421748	T	C	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DB;DP=234;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=0.061;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:171,63:0.27:234
chr19	49901484	rs12980364	T	C	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.90;ReadPosRankSum=0.517;SOR=0.344;set=HC	GT:AD:AF:DP	0/1:16,6:0.27:22
chr19	49902990	rs9807898	A	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr19	49903008	rs8110789	G	C	64.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.594;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.202;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:22,5:0.19:27
chr19	49920805	rs17206868	A	G	2161.77	.	AC=1;AF=0.500;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	0/1:306,134:0.30:440
chr19	49925667	rs12974629	T	G	7025.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr19	49930721	rs4802605	T	C	15811.77	.	AC=2;AF=1.00;AN=2;DB;DP=592;set=Intersection	GT:AD:AF:DP	1/1:0,591:1.00:591
chr19	49935927	rs5828394	A	AG	2882.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	49939719	rs2946848	T	C	200.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.137;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.699;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.09;ReadPosRankSum=0.504;SOR=1.295;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chr19	49940131	rs3826718	G	C	3553.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	49944730	rs58045148	CA	C	5548.73	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	49949589	rs1043263	A	T	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr19	49950298	rs13394	C	T	13756.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr19	49950356	rs12443	C	G	6127.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr19	49953051	rs61447252	CTTTTT	C	830.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;QD=37.76;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr19	49954282	rs68029391	CTT	C	438.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=10.710;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.791;QD=19.08;ReadPosRankSum=0.922;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:4,19:0.83:23
chr19	49954356	rs6509432	G	A	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	49954803	rs2293013	C	T	18731.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.28;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	49954807	rs2293012	T	G	18732.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=0.805;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr19	49955016	rs2293011	G	T	3274.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	49956460	rs11267495	GTAGCCCCACCCCATTCCCAT	G	4175.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr19	49956688	rs78750735	T	C	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DB;DP=236;ExcessHet=3.0103;FS=1.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=0.239;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:167,69:0.29:236
chr19	49956690	rs3760670	C	T	7407.77	.	AC=2;AF=1.00;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr19	49963971	rs35639941	A	AT	889.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.70;MQRankSum=-0.536;QD=11.41;ReadPosRankSum=-0.282;SOR=0.667;set=HC	GT:AD:AF:DP	0/1:18,60:0.77:78
chr19	49964977	rs1320303	C	G	7029.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr19	49965131	rs76844851	GG	AC	5397.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	49965173	rs7259560	A	T	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	49967680	rs2293009	G	A	15239.77	.	AC=2;AF=1.00;AN=2;DB;DP=573;set=Intersection	GT:AD:AF:DP	1/1:0,571:1.00:571
chr19	49969310	rs2914668	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	49971596	rs11879863	C	T	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:28,51:0.65:79
chr19	49973784	rs1055637	A	G	316.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chr19	49978936	rs7251338	G	C	2905.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:67,128:0.66:195
chr19	49979107	rs61254172	CT	C	1430.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.344;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.243;QD=10.01;ReadPosRankSum=0.927;SOR=1.188;set=HC	GT:AD:AF:DP	0/1:53,90:0.63:143
chr19	49979893	rs3826717	A	G	2323.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,103:0.72:144
chr19	49982451	rs10626541	A	ATT	173.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.561;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=7.55;ReadPosRankSum=1.637;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:10,13:0.57:23
chr19	49983673	rs1042120	C	T	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:41,92:0.69:133
chr19	49990843	rs2271951	A	G	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:7,27:0.79:34
chr19	49994470	rs59192944	T	A	8860.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.702;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=1.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.10;ReadPosRankSum=-0.162;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:127,226:0.64:353
chr19	49994476	rs56974957	T	C	6217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.806;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=1.343;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.51;ReadPosRankSum=-0.246;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:125,211:0.63:336
chr19	49994677	rs115089990	C	G	262.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=55.71;MQRankSum=-0.447;QD=12.51;ReadPosRankSum=1.666;SOR=1.569;set=HC	GT:AD:AF:DP	0/1:5,16:0.76:21
chr19	49999647	rs17555056	C	G	2776.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.680;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.72;ReadPosRankSum=-0.663;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:103,134:0.57:237
chr19	49999880	rs4802613	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr19	50002607	rs739349	C	T	550.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,23:0.64:36
chr19	50002686	rs756628	T	C	1796.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:38,80:0.68:118
chr19	50016748	rs59774409	C	T	546.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr19	50017724	rs2878342	C	T	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:22,57:0.72:79
chr19	50028040	rs3810194	T	C	8428.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:164,362:0.69:526
chr19	50028163	rs1132990	A	G	12518.77	.	AC=1;AF=0.500;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	0/1:319,586:0.65:905
chr19	50028306	rs71724821	CCTGCTG	C	4527.73	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:90,117:0.57:207
chr19	50028585	.	C	T	272.77	.	AC=1;AF=0.500;AN=2;DP=37;set=Intersection	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	50028620	rs73582446	G	A	596.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.70;ReadPosRankSum=0.773;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:19,28:0.60:47
chr19	50028915	rs55662447	CAG	C	383.73	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr19	50037384	rs149488043	G	GC	728.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:8,25:0.76:33
chr19	50037422	rs111817044	C	T	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:12,54:0.82:66
chr19	50037446	rs73582463	C	G	1868.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:20,76:0.79:96
chr19	50040152	rs73582470	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:28,49:0.64:77
chr19	50040271	rs112241191	GA	G	7817.73	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:111,221:0.67:332
chr19	50042371	rs8105626	T	C	1647.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr19	50042535	rs4560020	A	G	1899.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:52,89:0.63:141
chr19	50045878	rs34654230	C	T	2680.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:42,115:0.73:157
chr19	50045916	rs34459162	T	C	3059.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:58,144:0.71:202
chr19	50046036	rs56084109	C	T	1529.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:39,69:0.64:108
chr19	50046226	rs112443336	C	CAG	1228.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:16,27:0.63:43
chr19	50046239	rs45482295	A	G	1344.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr19	50046365	rs3187346	T	C	4860.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;MQ=60.03;set=Intersection	GT:AD:AF:DP	0/1:106,231:0.69:337
chr19	50046437	rs1129459	C	T	4116.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:63,183:0.74:246
chr19	50046473	rs1129460	A	C	3018.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:42,130:0.76:172
chr19	50059982	rs4594362	C	G	3117.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:57,129:0.69:186
chr19	50086626	rs3745473	T	C	1246.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr19	50086806	rs3745474	C	T	6326.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:138,282:0.67:420
chr19	50091798	rs2288920	G	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:58,118:0.67:176
chr19	50092002	rs2288921	T	G	351.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chr19	50093454	rs4429389	A	T	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	50093572	rs7249925	A	G	8930.77	.	AC=1;AF=0.500;AN=2;DB;DP=560;set=Intersection	GT:AD:AF:DP	0/1:164,396:0.71:560
chr19	50095047	rs146415405	AGCCGG	A	2014.73	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:22,52:0.70:74
chr19	50096421	rs10404887	C	G	813.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:14,37:0.73:51
chr19	50097547	rs7251877	A	G	2033.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:49,92:0.65:141
chr19	50097607	rs57940349	C	T	9151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.02;MQRankSum=-1.675;QD=17.11;ReadPosRankSum=0.628;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:140,395:0.74:535
chr19	50097784	rs10414643	T	C	7906.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:138,319:0.70:457
chr19	50097932	rs16981329	G	C	9126.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:211,400:0.65:611
chr19	50098423	rs12462756	G	A	10664.77	.	AC=1;AF=0.500;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	0/1:240,486:0.67:726
chr19	50099422	rs73058052	C	T	4522.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:102,201:0.66:303
chr19	50100295	rs3745475	A	G	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:100,199:0.67:299
chr19	50103252	rs2116922	G	A	5168.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:86,214:0.71:300
chr19	50104897	rs189937355	C	T	1601.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:62,74:0.54:136
chr19	50105239	rs6509439	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	50123759	rs114010839	G	C	1841.98	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:10,83:0.89:93
chr19	50124663	rs73058085	G	A	5908.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	50128543	rs7256146	A	G	4882.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:87,218:0.71:305
chr19	50140068	rs1368464	C	T	19589.77	.	AC=2;AF=1.00;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	1/1:0,737:1.00:737
chr19	50140092	rs1865077	G	A	18152.77	.	AC=2;AF=1.00;AN=2;DB;DP=675;set=Intersection	GT:AD:AF:DP	1/1:0,673:1.00:673
chr19	50140209	rs1368463	C	T	18347.77	.	AC=2;AF=1.00;AN=2;DB;DP=673;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr19	50140246	rs1865076	C	A	22621.77	.	AC=2;AF=1.00;AN=2;DB;DP=875;set=Intersection	GT:AD:AF:DP	1/1:1,870:1.00:871
chr19	50149269	rs34074594	G	A	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	0/1:332,182:0.35:514
chr19	50154408	rs12976076	C	T	2900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=819;ExcessHet=3.0103;FS=0.586;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.90;ReadPosRankSum=-2.427;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:539,204:0.27:743
chr19	50154904	rs7251334	A	C	3131.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	50155353	rs3745471	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr19	50155361	rs3833232	GCCGCTC	G	941.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;MQ=60.35;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	50156896	rs10401743	T	C	7384.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr19	50161807	rs7047	T	C	2220.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:47,100:0.68:147
chr19	50162909	rs7251	C	G	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	50163052	rs200392275	G	C	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:25,70:0.74:95
chr19	50168927	rs2304205	A	C	357.81	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:2,13:0.87:15
chr19	50169020	rs2304204	T	C	1253.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:16,55:0.77:71
chr19	50172434	rs117005178	G	A	2014.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:36,89:0.71:125
chr19	50177171	rs3745469	G	A	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:20,30:0.60:50
chr19	50182697	rs8109314	T	C	345.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chr19	50183449	rs35791962	C	T	1090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-1.807;SOR=0.833;set=HC	GT:AD:AF:DP	0/1:172,78:0.31:250
chr19	50183980	rs1433102	TT	CC	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr19	50187079	rs7260179	A	G	407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=4.235;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.71;ReadPosRankSum=1.238;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:81,29:0.26:110
chr19	50187111	rs3816047	C	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.336;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:117,45:0.28:162
chr19	50195455	rs115751101	G	A	2221.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:26,94:0.78:120
chr19	50195770	rs10423579	TT	CG	3312.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr19	50204843	rs12973248	G	A	1723.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:198,102:0.34:300
chr19	50205028	rs12973329	C	A	412.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:37,21:0.36:58
chr19	50208180	rs12984650	G	T	315.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:32,17:0.35:49
chr19	50208627	rs45617640	C	T	2638.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:40,106:0.73:146
chr19	50209095	rs7249356	T	G	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:124,66:0.35:190
chr19	50209653	rs12978911	C	T	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.037;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=2.952;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=-0.560;SOR=1.082;set=HC	GT:AD:AF:DP	0/1:94,31:0.25:125
chr19	50216118	rs56405217	T	TG	10694.73	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr19	50250872	rs8109529	G	A	1474.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	50265549	rs3745477	T	G	3890.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	50310775	rs62129186	C	T	756.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,32:0.59:54
chr19	50322611	.	T	TGATGGCTTGGGTGGTTGGGGTCCCTGTAAGGGGCCGTGCATGAGG	5345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.590;QD=26.33;ReadPosRankSum=-1.982;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:67,136:0.67:203
chr19	50322619	.	TG	T	2963	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=4;HapScore=4;MGOF=7;MMLQ=28;MQ=60.1;NF=2;NR=73;PP=2963;QD=20;SC=AGTGATGGCTTGGGGTGGTTG;SbPval=0.85;Source=Platypus;TC=150;TCF=7;TCR=143;TR=75;WE=50322665;WS=50322609;set=Platypus	GT:AD:AF:DP	0/1:75,75:0.50:150
chr19	50331678	rs5828413	CT	C	3188.73	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:50,94:0.65:144
chr19	50335510	rs3745480	T	C	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:65,106:0.62:171
chr19	50358170	rs1290657	T	C	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr19	50365199	.	G	C	2184.77	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr19	50383591	rs8109661	A	G	14090.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,529:1.00:529
chr19	50392802	rs202074795	T	TG	1078.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,40:0.68:59
chr19	50394193	.	G	GC	962	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=17;HapScore=4;MGOF=15;MMLQ=23;MQ=57.78;NF=3;NR=20;PP=962;QD=42.2173913043;SC=ATTGCCCCCCGCCCCCCCCCC;SbPval=0.74;Source=Platypus;TC=60;TCF=10;TCR=50;TR=23;WE=50394213;WS=50394178;set=Platypus	GT:AD:AF:DP	1/0:37,23:0.38:60
chr19	50394204	.	CT	C	1021	.	AC=1;AF=0.500;AN=2;BRF=0.4;FR=0.5000;HP=10;HapScore=4;MGOF=15;MMLQ=23;MQ=58.07;NF=2;NR=20;PP=1021;QD=46.8181818182;SC=CCCCCCCCCCCTGCCCGCCAG;SbPval=0.9;Source=Platypus;TC=62;TCF=11;TCR=51;TR=22;WE=50394213;WS=50394178;set=Platypus	GT:AD:AF:DP	1/0:40,22:0.35:62
chr19	50394205	.	T	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=1.731;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chr19	50404939	rs1290754	T	G	5704.77	.	AC=1;AF=0.500;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	0/1:118,255:0.68:373
chr19	50411742	rs892028	A	G	16337.77	.	AC=2;AF=1.00;AN=2;DB;DP=634;set=Intersection	GT:AD:AF:DP	1/1:0,633:1.00:633
chr19	50412217	rs1062798	C	G	2997.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.852;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.19;ReadPosRankSum=2.426;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:312,172:0.36:484
chr19	50412417	rs999583	G	A	964.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:132,57:0.30:189
chr19	50435747	rs283525	T	C	1489.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=1.516;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=-2.111;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:379,114:0.23:493
chr19	50435862	rs283526	C	T	967.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:90,48:0.35:138
chr19	50436371	rs8667	G	A	839.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:125,49:0.28:174
chr19	50462244	rs1811375	G	A	4804.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:114,222:0.66:336
chr19	50463670	rs79085301	T	G	3779.77	.	AC=1;AF=0.500;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	0/1:82,150:0.65:232
chr19	50463727	rs80184294	G	A	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	0/1:106,216:0.67:322
chr19	50463982	rs9676436	T	G	4269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DB;DP=365;ExcessHet=3.0103;FS=23.467;MLEAC=1;MLEAF=0.500;MQ=46.36;MQRankSum=-6.725;QD=11.70;ReadPosRankSum=-1.797;SOR=1.208;set=HC	GT:AD:AF:DP	0/1:187,178:0.49:365
chr19	50472823	rs28522385	T	A	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	50473221	rs377111720	T	C	251.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.078;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=52.680;MLEAC=1;MLEAF=0.500;MQ=46.95;MQRankSum=-8.485;QD=1.49;ReadPosRankSum=-0.280;SOR=5.921;set=HC	GT:AD:AF:DP	0/1:145,24:0.14:169
chr19	50474549	rs200031551	GT	CC	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.443;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=5.518;JOINED;MLEAC=1;MLEAF=0.500;MQ=46.88;MQRankSum=-3.002;QD=6.08;ReadPosRankSum=0.969;SOR=2.252;set=HC	GT:AD:AF:DP	0/1:17,4:0.19:21
chr19	50474553	rs202161331	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.169;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=5.656;MLEAC=1;MLEAF=0.500;MQ=46.66;MQRankSum=-3.329;QD=9.21;ReadPosRankSum=-0.079;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	50474556	rs200109712	A	G	247.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.340;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=11.666;MLEAC=1;MLEAF=0.500;MQ=45.96;MQRankSum=-3.855;QD=9.18;ReadPosRankSum=-0.774;SOR=3.456;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr19	50474558	rs201092081	G	A	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.657;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=11.666;MLEAC=1;MLEAF=0.500;MQ=45.96;MQRankSum=-3.855;QD=7.62;ReadPosRankSum=-0.870;SOR=3.456;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chr19	50474562	rs202019466	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.401;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=11.253;MLEAC=1;MLEAF=0.500;MQ=46.54;MQRankSum=-3.875;QD=7.24;ReadPosRankSum=-0.924;SOR=3.312;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chr19	50474673	rs112792790	T	C	303.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,15:0.43:35
chr19	50475017	rs12462972	G	A	3930.77	.	AC=1;AF=0.500;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	0/1:110,180:0.62:290
chr19	50475075	rs200713500	GTC	AAT	7926.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;JOINED;set=Intersection	GT:AD:AF:DP	0/1:112,195:0.64:307
chr19	50475114	rs8111526	G	C	4846.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:117,210:0.64:327
chr19	50475174	rs12462945	A	C	4141.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:91,186:0.67:277
chr19	50475208	rs12462966	C	T	6131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-6.501;QD=27.25;ReadPosRankSum=0.312;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:72,153:0.68:225
chr19	50475211	rs34340223	T	G	6088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.227;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=57.08;MQRankSum=-6.246;QD=27.43;ReadPosRankSum=0.453;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:72,150:0.68:222
chr19	50475215	rs12463034	G	A	5916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.38;MQRankSum=-6.072;QD=26.89;ReadPosRankSum=1.020;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:75,145:0.66:220
chr19	50475259	rs12463036	G	C	3272.77	.	AC=1;AF=0.500;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	0/1:78,138:0.64:216
chr19	50475458	rs34653225	T	A	2071.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.90;ReadPosRankSum=0.256;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:22,58:0.72:80
chr19	50475466	rs55752562	G	A	1900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=32.22;ReadPosRankSum=-1.531;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:14,45:0.76:59
chr19	50476219	rs59949051	T	C	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:23,60:0.72:83
chr19	50476426	rs35238216	C	T	1967.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:39,86:0.69:125
chr19	50476467	rs66855472	A	G	1059.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:21,45:0.68:66
chr19	50476478	rs58165915	A	G	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr19	50482232	rs8104102	C	T	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:24,45:0.65:69
chr19	50492860	rs10424282	C	G	1221.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chr19	50493120	rs283517	T	C	2268.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr19	50493131	rs2304112	G	A	1911.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:34,79:0.70:113
chr19	50496281	rs113770287	G	GAC	1749.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;MQ=60.26;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	50498604	rs201819422	GAGA	G	2953.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:35,74:0.68:109
chr19	50500922	rs12459330	C	A	1411.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:16,61:0.79:77
chr19	50504250	rs2115507	T	C	221.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chr19	50511108	rs3816033	T	C	1503.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:50,64:0.56:114
chr19	50519231	rs1469694	T	C	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,46:0.72:64
chr19	50519249	rs1469693	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,63:0.72:88
chr19	50534520	rs17661933	G	A	864.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:15,37:0.71:52
chr19	50657786	rs66651303	AG	A	14950.73	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr19	50662726	rs3745499	G	C	196.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=0.987;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.31;ReadPosRankSum=1.110;SOR=0.558;set=HC	GT:AD:AF:DP	0/1:67,18:0.21:85
chr19	50720795	rs10412634	G	A	2217.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:261,118:0.31:379
chr19	50726319	rs12609315	C	G	1132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.704;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=7.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.015;SOR=1.174;set=HC	GT:AD:AF:DP	0/1:209,70:0.25:279
chr19	50726459	rs654877	T	C	3162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.388;ClippingRankSum=0.000;DB;DP=621;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.10;ReadPosRankSum=-0.163;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:427,193:0.31:620
chr19	50726570	rs4801822	G	A	2149.77	.	AC=1;AF=0.500;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	0/1:234,120:0.34:354
chr19	50727312	rs7258667	C	T	1506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=24.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.91;ReadPosRankSum=4.801;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:76,76:0.50:152
chr19	50728148	rs61389250	G	A	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:34,23:0.40:57
chr19	50728955	rs12983888	G	A	1391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.446;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=-1.118;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:220,94:0.30:314
chr19	50730047	rs71180683	TG	T	539.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.941;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.09;ReadPosRankSum=0.666;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:100,32:0.24:132
chr19	50735024	rs34062561	C	T	960.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:125,52:0.29:177
chr19	50735340	rs11666328	C	T	5258.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:101,239:0.70:340
chr19	50750419	rs607227	C	T	8218.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr19	50760716	rs378811	C	G	11019.77	.	AC=1;AF=0.500;AN=2;DB;DP=785;set=Intersection	GT:AD:AF:DP	0/1:274,509:0.65:783
chr19	50762418	rs1651553	A	G	1324.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:193,86:0.31:279
chr19	50763889	rs12981413	C	T	5001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.804;ClippingRankSum=0.000;DB;DP=1109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=3.207;QD=4.51;ReadPosRankSum=0.825;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:797,311:0.28:1108
chr19	50764017	rs146099002	T	TGC	1703.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:258,113:0.30:371
chr19	50764079	rs140241247	A	AGT	886.73	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:89,29:0.25:118
chr19	50766707	rs1529492	T	C	704.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=-2.082;SOR=0.599;set=HC	GT:AD:AF:DP	0/1:66,37:0.36:103
chr19	50771609	rs3745504	G	A	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	50771635	rs930086	T	C	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr19	50775742	rs1651543	A	G	1647.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	50779151	rs8108435	C	T	587.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:69,33:0.32:102
chr19	50779988	rs788337	A	T	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.407;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=-0.364;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:89,19:0.18:108
chr19	50780186	rs7259185	G	A	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.613;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=2.753;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=5.04;ReadPosRankSum=0.014;SOR=0.360;set=HC	GT:AD:AF:DP	0/1:27,16:0.37:43
chr19	50796352	rs651044	C	A	804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=6.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.17;ReadPosRankSum=-0.226;SOR=0.373;set=HC	GT:AD:AF:DP	0/1:140,53:0.27:193
chr19	50796905	rs3745509	G	A	564.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr19	50796960	rs3745510	C	T	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:67,25:0.27:92
chr19	50797131	rs4801826	A	G	48.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:6,3:0.33:9
chr19	50805138	rs3826772	C	T	4299.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	50812221	rs889002	A	G	1137.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	50813169	rs12978083	A	C	12821.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr19	50813263	rs627491	T	G	3538.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	50832152	rs375912738	T	C	1513.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=1.697;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	50837859	rs56849250	C	CA	1646.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.90;QD=35.80;SOR=5.421;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr19	50881820	rs55652650	A	AAAC	9166.73	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr19	50909389	rs1673041	T	G	4930.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	50919797	rs3218776	C	T	5040.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.25;SOR=0.872;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	50922370	rs2244095	A	G	1308.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr19	50926264	rs1673030	TG	CC	8253.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	50926742	rs3745516	A	G	2448.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr19	50936378	rs3765069	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chr19	50938385	rs11669020	C	A	7414.77	.	AC=1;AF=0.500;AN=2;DB;DP=506;set=Intersection	GT:AD:AF:DP	0/1:177,329:0.65:506
chr19	50939844	rs117858598	G	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.527;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-0.467;SOR=0.337;set=HC	GT:AD:AF:DP	0/1:68,25:0.27:93
chr19	50939867	rs2004423	G	A	2516.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:35,107:0.75:142
chr19	50940594	rs2293455	G	C	2146.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:43,88:0.67:131
chr19	50954584	rs8105250	C	T	3129.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:83,144:0.63:227
chr19	50957397	rs25665	G	A	7961.77	.	AC=1;AF=0.500;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	0/1:156,366:0.70:522
chr19	50957677	rs138962446	GTT	G,GT	840.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=12.860;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.63;MQRankSum=0.518;QD=16.48;ReadPosRankSum=1.262;SOR=2.590;set=HC	GT:AD:AF:DP	1/2:2,32,17:0.63,0.33:51
chr19	50958995	rs12980584	T	C	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:35,17:0.33:52
chr19	50962062	rs3745518	G	A	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.518;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=6.078;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.91;ReadPosRankSum=-0.609;SOR=1.268;set=HC	GT:AD:AF:DP	0/1:116,37:0.24:153
chr19	50965272	rs25668	T	C	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr19	50967640	rs25667	G	A	5123.77	.	AC=1;AF=0.500;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	0/1:127,239:0.65:366
chr19	50969325	rs1274604	A	G	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	50982086	rs921938	C	A	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	50983930	rs10409679	C	T	6743.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr19	50985038	rs12609351	C	T	1177.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:25,49:0.66:74
chr19	50986074	rs14031	G	A	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr19	51015404	rs12977172	T	C	3289.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:1,113:0.99:114
chr19	51015574	rs12976250	G	C	3480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;ClippingRankSum=0.000;DB;DP=723;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=0.526;SOR=0.716;set=HC	GT:AD:AF:DP	0/1:511,209:0.29:720
chr19	51015869	rs2305761	G	A	713.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.168;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.582;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.13;ReadPosRankSum=2.211;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:177,51:0.22:228
chr19	51016200	rs116995433	C	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:211,86:0.29:297
chr19	51017835	rs889131	G	A	18726.77	.	AC=2;AF=1.00;AN=2;DB;DP=691;set=Intersection	GT:AD:AF:DP	1/1:0,687:1.00:687
chr19	51020903	rs61751956	A	G	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	51021057	rs61751957	A	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	51052189	rs11880112	T	C	355.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	51128661	rs16986142	T	C	9165.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	51128856	rs10426057	A	C	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:1,166:0.99:167
chr19	51132979	.	G	A	274	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=3;HapScore=1;MGOF=19;MMLQ=16;MQ=57.28;NF=16;NR=12;PP=274;QD=11.0275433053;SC=CCTCAGACCCGGGAGTCCAGA;SbPval=0.48;Source=Platypus;TC=98;TCF=58;TCR=40;TR=28;WE=51132987;WS=51132969;set=Platypus	GT:AD:AF:DP	1/0:70,28:0.29:98
chr19	51133356	rs10407511	C	G	975.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.215;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=1.175;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-2.357;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:150,61:0.29:211
chr19	51140654	rs3815749	G	A	2925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;ClippingRankSum=0.000;DB;DP=177;ExcessHet=3.0103;FS=7.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.53;ReadPosRankSum=-1.002;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:45,132:0.75:177
chr19	51140689	rs2287820	T	C	2762.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:52,131:0.72:183
chr19	51140752	rs2287819	T	C	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:38,86:0.69:124
chr19	51159571	rs4801844	T	G	12390.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr19	51170706	rs3745521	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	51170978	rs750577	C	T	710.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:9,29:0.76:38
chr19	51171188	rs750578	G	A	613.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:62,31:0.33:93
chr19	51191003	rs11878464	A	G	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr19	51191172	rs12975345	A	G	4964.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:109,231:0.68:340
chr19	51206695	rs11671478	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:50,24:0.32:74
chr19	51217550	rs3745530	G	A	5275.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:128,241:0.65:369
chr19	51227977	rs114190815	T	C	82.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	51228634	rs11084024	G	A	14440.77	.	AC=1;AF=0.500;AN=2;DB;DP=926;set=Intersection	GT:AD:AF:DP	0/1:289,633:0.69:922
chr19	51228802	rs1053020	T	G	13935.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:0,545:1.00:545
chr19	51261635	rs73046514	G	T	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:59,34:0.37:93
chr19	51261825	rs117611112	G	C	9339.77	.	AC=1;AF=0.500;AN=2;DB;DP=565;set=Intersection	GT:AD:AF:DP	0/1:157,406:0.72:563
chr19	51261892	rs73046518	G	A	3608.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:477,216:0.31:693
chr19	51261951	rs11880363	G	T	14021.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr19	51262056	rs11883166	T	C	3276.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr19	51262620	rs10424138	A	C	4681.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr19	51262668	rs12983009	C	T	1268.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:29,53:0.65:82
chr19	51294003	rs1978605	T	G	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=2.143;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr19	51297825	rs55716643	GC	AA	5210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.422;ClippingRankSum=0.000;DB;DP=416;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.53;ReadPosRankSum=0.862;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:271,145:0.35:416
chr19	51297944	rs266123	A	G	1107.77	.	AC=1;AF=0.500;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	0/1:150,63:0.30:213
chr19	51301395	rs4801853	C	T	1137.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:163,66:0.29:229
chr19	51301456	rs4802741	G	A	2369.77	.	AC=1;AF=0.500;AN=2;DB;DP=454;set=Intersection	GT:AD:AF:DP	0/1:313,141:0.31:454
chr19	51302154	rs1043315	G	A	418.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:56,24:0.30:80
chr19	51302202	rs3745526	T	A	525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.280;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.059;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:121,34:0.22:155
chr19	51302473	rs3833237	T	TAAG	1438.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=215;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.824;QD=7.30;ReadPosRankSum=1.536;SOR=0.865;set=HC	GT:AD:AF:DP	0/1:151,46:0.23:197
chr19	51305784	rs2560931	C	T	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:38,22:0.37:60
chr19	51321813	rs2411334	A	G	17918.77	.	AC=2;AF=1.00;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr19	51321919	rs3212841	C	CCAGCCTTCGCAGGCCACACCCTGAAGCCACTCTCCACCCGCT	6124.73	.	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=43.75;SOR=5.166;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr19	51323473	rs5516	C	G	18078.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,662:1.00:662
chr19	51323501	rs1054713	A	G	14645.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr19	51323881	rs2659103	T	G	353.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	51327163	rs35641597	GC	G	591.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	51327172	rs56125748	C	G	41.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=6.308;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.67;ReadPosRankSum=-1.521;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:19,6:0.24:25
chr19	51330423	rs61752560	C	G	797.77	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:103,47:0.31:150
chr19	51331199	rs142271509	G	GT	3690.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	51331205	rs372866981	G	GT	3740.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	51334890	rs3745523	C	T	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	51358333	rs266881	C	A	6648.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	51361644	rs1810020	A	G	8146.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr19	51363026	rs2659122	C	T	1002.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	51363398	rs1058205	C	T	10813.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr19	51363448	rs1058274	A	G	6853.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr19	51379893	rs198972	C	T	2478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.038;ClippingRankSum=0.000;DB;DP=555;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.549;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:402,153:0.28:555
chr19	51380110	rs6070	T	A	1597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.743;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=3.228;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.276;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:251,98:0.28:349
chr19	51391121	rs66651444	A	C	1052.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:101,56:0.36:157
chr19	51411636	rs2569527	G	T	4357.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	51412666	rs1654552	C	A	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:70,112:0.62:182
chr19	51413802	rs198969	G	C	3528.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:62,147:0.70:209
chr19	51447065	rs1701949	T	C	2290.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr19	51452250	rs183854	T	C	3386.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=0.889;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	51480671	rs59354651	AGGTT	A	402.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.30;ReadPosRankSum=0.338;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:61,15:0.20:76
chr19	51482969	rs1701924	C	T	1207.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	51484984	rs1991820	C	T	4520.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.76;SOR=1.705;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	51484990	rs1991819	T	C	5374.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.15;SOR=1.469;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	51485013	rs1991818	C	T	5896.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	51485194	rs1654523	C	T	5642.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	51485622	rs2659067	A	G	7093.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,262:1.00:262
chr19	51487067	rs1275221	T	C	10264.77	.	AC=2;AF=1.00;AN=2;DB;DP=397;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=0.750;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr19	51487175	rs1624358	T	G	5012.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:1,183:0.99:184
chr19	51528832	rs62117661	C	T	1202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340;ClippingRankSum=0.000;DB;DP=282;ExcessHet=3.0103;FS=1.025;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.27;ReadPosRankSum=-0.149;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:204,78:0.28:282
chr19	51530693	rs1474520	G	A	6454.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr19	51535130	rs3745540	A	G	19170.77	.	AC=2;AF=1.00;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	1/1:0,719:1.00:719
chr19	51535460	rs10635364	T	TCC	2679.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	51537682	rs3865443	C	A	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.69;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	51537903	rs71185791	G	GA	1162.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr19	51563965	rs2569474	G	A	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr19	51566943	rs2736433	G	A	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=-0.759;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:173,67:0.28:240
chr19	51567176	rs2736431	G	A	810.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:120,50:0.29:170
chr19	51567744	rs35554667	CA	C	97.19	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.14;ReadPosRankSum=1.654;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chr19	51567990	rs10500306	T	C	1203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=3.534;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.08;ReadPosRankSum=-0.032;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:126,72:0.36:198
chr19	51568029	rs2736434	G	T	943.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr19	51568066	rs12979090	A	G	641.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:30,26:0.46:56
chr19	51582994	rs11671800	G	T	841.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=5.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.95;ReadPosRankSum=-2.449;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:38,27:0.42:65
chr19	51583003	rs6509518	A	G	717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.792;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.747;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=-0.057;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:38,18:0.32:56
chr19	51584743	rs2569489	A	G	89.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	51584916	rs2569491	G	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=2.451;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:169,51:0.23:220
chr19	51584951	rs35287116	T	C	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.197;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=4.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=-3.009;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:164,49:0.23:213
chr19	51602298	rs12983578	C	G	2982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.505;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=18.326;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.39;ReadPosRankSum=-0.671;SOR=0.156;set=HC	GT:AD:AF:DP	0/1:45,137:0.75:182
chr19	51656218	rs273661	G	C	1118.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	51656454	rs273662	A	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	51714781	rs62623429	C	T	2917.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:56,131:0.70:187
chr19	51728477	rs12459419	C	T	1359.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:171,79:0.32:250
chr19	51728641	rs2455069	A	G	2983.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:76,132:0.63:208
chr19	51738917	rs35112940	G	A	1212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;ClippingRankSum=0.000;DB;DP=288;ExcessHet=3.0103;FS=2.917;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.23;ReadPosRankSum=-0.620;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:208,79:0.28:287
chr19	51767205	rs6509523	C	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.073;SOR=0.720;set=HC	GT:AD:AF:DP	0/1:206,69:0.25:275
chr19	51815243	rs4802779	G	C	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.86;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	51825238	rs34297802	C	T	5291.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	51831759	rs61422289	G	GA	930.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=6.099;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.31;ReadPosRankSum=0.466;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:36,76:0.68:112
chr19	51835866	rs370588522	TACAGAG	T	2662.73	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:192,78:0.29:270
chr19	51835892	rs11402251	T	TG	7843.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	51837171	rs7255306	A	G	2053.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr19	51837213	rs7255412	A	G	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	51837332	rs10418551	A	G	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	51850290	rs1130426	G	A	10557.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr19	51850402	rs8112687	T	C	5878.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	51850427	rs74903528	G	A	4685.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	51869346	rs3786625	G	A	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:47,22:0.32:69
chr19	51874950	rs3009	G	A	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:55,32:0.37:87
chr19	51883727	rs2547318	G	A	9403.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	51914246	rs200056653	AAG	A	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=1.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-0.242;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:69,9:0.12:78
chr19	51919140	rs3810101	G	A	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:14,42:0.75:56
chr19	51919240	rs79484306	C	T	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.715;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=-6.189;QD=6.55;ReadPosRankSum=0.389;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:112,35:0.24:147
chr19	51919263	rs7258951	G	T	858.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-7.234;QD=7.04;ReadPosRankSum=-1.241;SOR=0.745;set=HC	GT:AD:AF:DP	0/1:94,28:0.23:122
chr19	51919267	rs7258638	A	G	768.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.772;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.84;MQRankSum=-7.903;QD=6.41;ReadPosRankSum=-0.491;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:96,24:0.20:120
chr19	51919279	rs200737875	A	G	600.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=58.85;MQRankSum=-7.843;QD=5.32;ReadPosRankSum=-1.336;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:93,20:0.18:113
chr19	51919302	rs201376644	T	C	69.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.764;MLEAC=1;MLEAF=0.500;MQ=58.78;MQRankSum=-8.667;QD=0.82;ReadPosRankSum=-1.719;SOR=1.841;set=HC	GT:AD:AF:DP	0/1:77,8:0.09:85
chr19	51919507	rs62114257	T	C	13298.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr19	51920613	rs1010425	C	T	12558.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr19	51955632	rs28379613	A	T	939.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:73,49:0.40:122
chr19	51957556	rs3829659	T	C	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:35,12:0.26:47
chr19	51960940	rs10409962	A	G	1327.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=3.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=2.229;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:213,83:0.28:296
chr19	51961102	rs79185955	CA	C	1082.73	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:107,46:0.30:153
chr19	51981753	rs11878388	G	C	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:36,38:0.51:74
chr19	51981965	rs75818312	G	A	981.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:131,59:0.31:190
chr19	51984725	rs8106673	T	A	6351.77	.	AC=2;AF=1.00;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	51994851	rs16982735	C	G	204.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:41,12:0.23:53
chr19	52000624	rs3752135	T	G	2645.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:48,112:0.70:160
chr19	52000672	rs3829658	G	A	4062.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:77,180:0.70:257
chr19	52001485	rs11668530	G	A	6377.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:115,286:0.71:401
chr19	52002317	rs4801871	G	C	506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.70;ReadPosRankSum=0.285;SOR=0.386;set=HC	GT:AD:AF:DP	0/1:13,24:0.65:37
chr19	52002488	rs968491	C	A	1073.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:28,47:0.63:75
chr19	52002729	rs2009362	G	A	2604.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:58,119:0.67:177
chr19	52003058	rs10420446	C	T	1648.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr19	52003089	rs10420457	C	T	1567.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:32,63:0.66:95
chr19	52003331	rs6509544	G	C	5927.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:75,257:0.77:332
chr19	52004469	rs3810108	C	T	3346.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:61,141:0.70:202
chr19	52004551	rs3810109	C	T	5569.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:106,242:0.70:348
chr19	52004743	rs3810110	G	A	10739.77	.	AC=1;AF=0.500;AN=2;DB;DP=703;set=Intersection	GT:AD:AF:DP	0/1:223,477:0.68:700
chr19	52004791	rs66949844	G	GC	17895.73	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:216,439:0.67:655
chr19	52004795	rs61742108	G	T	18057.77	.	AC=1;AF=0.500;AN=2;DB;DP=683;set=Intersection	GT:AD:AF:DP	0/1:227,454:0.67:681
chr19	52031162	rs897783	A	G	834.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:41,40:0.49:81
chr19	52031648	rs10419617	A	G	2800.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:56,122:0.69:178
chr19	52032964	rs3976745	C	G	8227.77	.	AC=1;AF=0.500;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	0/1:197,369:0.65:566
chr19	52033742	rs2305772	G	A	3745.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:62,162:0.72:224
chr19	52034940	rs1551559	C	T	1427.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:33,59:0.64:92
chr19	52085291	rs1543923	T	C	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:10,24:0.71:34
chr19	52089806	rs10439118	T	C	141.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr19	52092821	rs1054328	C	G	3815.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.598;ClippingRankSum=0.000;DB;DP=1365;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=0.788;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:1047,314:0.23:1361
chr19	52095980	rs3794984	G	T	2041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=0.886;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:54,96:0.64:150
chr19	52096033	rs3838908	GATAAA	G	3237.73	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:54,82:0.60:136
chr19	52096053	rs3794983	T	A	2078.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:57,94:0.62:151
chr19	52096270	rs3794982	C	G	2378.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:41,103:0.72:144
chr19	52097177	rs7253296	T	C	811.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:104,41:0.28:145
chr19	52097461	rs7252645	A	C	17725.77	.	AC=1;AF=0.500;AN=2;DB;DP=1192;set=Intersection	GT:AD:AF:DP	0/1:403,785:0.66:1188
chr19	52097586	rs7252767	A	G	10393.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;ClippingRankSum=0.000;DB;DP=694;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.06;ReadPosRankSum=-0.426;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:221,469:0.68:690
chr19	52097660	rs62114984	C	G	3123.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:62,120:0.66:182
chr19	52101918	rs1868947	T	C	5505.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:1,207:1.00:208
chr19	52102232	rs58593232	TGA	T	1392.73	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:75,42:0.36:117
chr19	52104489	rs8113451	C	G	2682.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	52104560	rs3752127	T	C	5590.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	52104713	rs3752126	G	C	3531.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	52104746	rs143546718	G	C	1482.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:12,66:0.85:78
chr19	52115645	rs3829655	G	C	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr19	52115833	rs12462938	A	G	321.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	52130830	rs8107754	C	A	5976.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	52132524	rs112581861	T	TACACAC,TAC	830.73	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=52;set=Intersection	GT:AF:DP	0/1:0.79:43
chr19	52148617	rs4544342	A	G	2624.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:52,114:0.69:166
chr19	52148804	rs885266	A	C	4574.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:121,208:0.63:329
chr19	52148918	rs1868952	C	G	1185.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:31,46:0.60:77
chr19	52148952	.	T	TACACAC,TAC	634	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.21;FR=0.5000,0.5000;HP=1;HapScore=3;MGOF=27;MMLQ=23;MQ=53.59;NF=17,17;NR=20,20;PP=473,634;QD=12.8648648649;SC=CTCTCTCTTCTACACACACAC;SbPval=0.56;Source=Platypus;TC=59;TCF=27;TCR=32;TR=37,37;WE=52148960;WS=52148942;set=Platypus	GT:AF:DP	0/1:0.63:59
chr19	52148980	rs11424909	C	CA	1717.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.254;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=3.074;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=-1.277;QD=25.26;ReadPosRankSum=0.982;SOR=1.452;set=HC	GT:AD:AF:DP	0/1:12,56:0.82:68
chr19	52148981	rs2100297	C	CA,CACACA	2007.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=5.940;MLEAC=1,1;MLEAF=0.500,0.500;MQ=53.80;MQRankSum=-0.993;QD=36.50;ReadPosRankSum=0.903;SOR=1.601;set=HC	GT:AD:AF:DP	1/2:5,33,17:0.60,0.31:55
chr19	52149165	rs71358847	G	A	2128.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=16.949;MLEAC=1;MLEAF=0.500;MQ=47.24;MQRankSum=-2.587;QD=16.63;ReadPosRankSum=-0.005;SOR=0.117;set=HC	GT:AD:AF:DP	0/1:34,94:0.73:128
chr19	52208277	rs11382950	G	GC	6080.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr19	52222552	rs11084112	G	A	10549.77	.	AC=1;AF=0.500;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	0/1:225,478:0.68:703
chr19	52223121	rs7248778	A	G	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	52223180	rs56166910	A	G	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:70,26:0.27:96
chr19	52223251	rs59168688	T	G	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.34;SOR=3.033;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	52223266	rs57088533	T	C	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.05;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	52227137	.	T	TACACACAC,TACACACACAC	3562.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=91;set=Intersection	GT:AF:DP	1/2:0.36,0.64:78
chr19	52249071	rs5828493	CT	C	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=7.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.958;SOR=2.985;set=HC	GT:AD:AF:DP	0/1:10,15:0.60:25
chr19	52249211	rs867228	T	G	4388.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:73,206:0.74:279
chr19	52249255	rs17849971	G	A	1960.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:289,121:0.30:410
chr19	52249947	rs2070745	C	G	3980.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:105,171:0.62:276
chr19	52328133	rs7254019	G	A	2254.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:33,85:0.72:118
chr19	52403516	rs1549931	T	C	2819.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:57,123:0.68:180
chr19	52468203	rs2278415	T	A	4295.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:79,196:0.71:275
chr19	52468587	rs3764538	G	T	6057.77	.	AC=1;AF=0.500;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	0/1:130,267:0.67:397
chr19	52468998	rs4988334	A	G	6916.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:145,303:0.68:448
chr19	52471769	rs2278417	C	T	2236.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:34,56:0.62:90
chr19	52471785	rs2278418	T	A	2468.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:38,68:0.64:106
chr19	52471813	rs2278419	T	C	2017.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:56,90:0.62:146
chr19	52471872	rs2278420	A	G	2954.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:82,141:0.63:223
chr19	52472295	rs4986773	A	G	3595.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:104,172:0.62:276
chr19	52496149	rs16983353	C	T	3479.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:83,154:0.65:237
chr19	52497250	rs1978717	G	A	5580.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:145,247:0.63:392
chr19	52497943	rs10500311	G	A	1840.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:40,82:0.67:122
chr19	52503658	rs58197197	T	C	1667.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=-0.038;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:32,76:0.70:108
chr19	52504920	rs2903709	T	C	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr19	52505641	rs10714016	GT	G	2995.73	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:94,161:0.63:255
chr19	52506985	rs1433089	T	C	3852.77	.	AC=1;AF=0.500;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	0/1:88,175:0.67:263
chr19	52516360	rs11671702	C	T	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,9:0.69:13
chr19	52519608	rs8104890	C	T	6052.77	.	AC=1;AF=0.500;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	0/1:138,268:0.66:406
chr19	52520550	rs141035689	C	T	3237.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:80,148:0.65:228
chr19	52520607	rs61574510	C	T	2589.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:69,118:0.63:187
chr19	52520714	rs12976476	G	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	52521192	rs61287503	A	C	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:41,52:0.56:93
chr19	52521296	rs9636139	G	A	1571.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr19	52521928	rs12610953	G	A	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr19	52537576	rs11666149	T	G	3220.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:95,148:0.61:243
chr19	52587907	rs11084141	G	A	3826.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=0.626;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.01;ReadPosRankSum=-0.443;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:56,97:0.63:153
chr19	52587917	rs11084142	A	G	4028.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.56;ReadPosRankSum=-0.604;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:62,109:0.64:171
chr19	52658510	rs8113504	T	C	1903.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:252,106:0.30:358
chr19	52693277	rs13344984	T	C	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr19	52693289	rs67495004	G	GC	4426.73	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr19	52693298	rs17554825	A	G	4559.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	52704961	rs10420138	T	C	5390.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr19	52709064	rs10422583	G	T	1094.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	52714434	rs10422483	T	A	114.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:18,7:0.28:25
chr19	52719011	rs874421	C	G	670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764;ClippingRankSum=0.000;DB;DP=140;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-1.361;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:95,43:0.31:138
chr19	52719190	rs755531	A	G	1337.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=1.243;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:216,85:0.28:301
chr19	52723584	rs2288409	T	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.847;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.663;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.79;ReadPosRankSum=-0.575;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:36,9:0.20:45
chr19	52725338	rs10412196	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:58,42:0.42:100
chr19	52729030	rs10413435	C	T	1834.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;ClippingRankSum=0.000;DB;DP=543;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.516;SOR=0.652;set=HC	GT:AD:AF:DP	0/1:410,133:0.24:543
chr19	52793261	rs10418171	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:56,37:0.40:93
chr19	52800396	.	C	T	681	.	AC=1;AF=0.500;AN=2;BRF=0.54;FR=0.5000;HP=3;HapScore=1;MGOF=51;MMLQ=23;MQ=59.14;NF=18;NR=20;PP=681;QD=18.8360845407;SC=GCCCCCGCCCCGCTCGGACCC;SbPval=0.3;Source=Platypus;TC=112;TCF=62;TCR=50;TR=38;WE=52800404;WS=52800386;set=Platypus	GT:AD:AF:DP	0/1:74,38:0.34:112
chr19	52800516	rs67621412	C	A	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182;ClippingRankSum=0.000;DB;DP=272;ExcessHet=3.0103;FS=3.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=1.470;SOR=0.858;set=HC	GT:AD:AF:DP	0/1:155,80:0.34:235
chr19	52803669	rs3217319	CTG	C	9101.73	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	52825235	rs8102373	A	G	4289.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr19	52852523	rs321953	T	C	4124.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr19	52869022	rs2241586	G	T	2739.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr19	52869278	rs321937	G	C	3448.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	52869312	rs162120	T	C	4110.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	52869534	rs162119	G	A	7442.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	52873023	rs707312	A	G	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr19	52876385	rs14048	G	A	5117.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	52877464	rs35732198	A	AT	596.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.874;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.62;ReadPosRankSum=-0.365;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:18,44:0.71:62
chr19	52887282	rs324125	A	G	3128.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr19	52888048	rs324124	G	A	16198.77	.	AC=2;AF=1.00;AN=2;DB;DP=612;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr19	52893538	rs2657917	TG	CA	7460.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr19	52905067	rs324091	A	C	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	52909303	rs2290745	C	T	8383.77	.	AC=1;AF=0.500;AN=2;DB;DP=545;set=Intersection	GT:AD:AF:DP	0/1:160,383:0.71:543
chr19	52909458	rs2245620	T	G	1105.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:30,47:0.61:77
chr19	52909989	rs11668956	A	G	1182.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:10,44:0.81:54
chr19	52917590	rs162124	G	A	2356.77	.	AC=1;AF=0.500;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	0/1:63,101:0.62:164
chr19	52917626	rs162123	A	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr19	52919624	rs146381631	A	T	678.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:88,39:0.31:127
chr19	52920006	rs10664588	C	CTG	9396.73	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	52937530	rs2560997	C	T	1456.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:24,61:0.72:85
chr19	52938361	rs11084161	C	A	5044.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:79,227:0.74:306
chr19	52938417	rs11084162	A	G	4820.77	.	AC=1;AF=0.500;AN=2;DB;DP=306;set=Intersection	GT:AD:AF:DP	0/1:88,217:0.71:305
chr19	52938459	rs11084163	A	G	3640.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:61,165:0.73:226
chr19	52940931	rs1428179	A	T	504.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr19	52941171	rs1428180	T	C	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:21,75:0.78:96
chr19	52941540	rs1366257	G	A	3439.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:96,155:0.62:251
chr19	52941618	rs1366258	A	C	3604.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:85,152:0.64:237
chr19	52941847	rs1366259	A	T	4019.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:108,183:0.63:291
chr19	52942159	rs2608497	A	G	6904.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:152,297:0.66:449
chr19	52942445	rs2608498	C	T	13215.77	.	AC=1;AF=0.500;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	0/1:197,399:0.67:596
chr19	52942495	rs2561001	G	A	12243.77	.	AC=1;AF=0.500;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	0/1:209,353:0.63:562
chr19	52942734	rs2446079	C	T	2127.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:20,88:0.81:108
chr19	52954507	rs324104	T	C	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:110,184:0.63:294
chr19	53005249	rs9304729	A	G	2802.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:62,125:0.67:187
chr19	53014346	rs161931	G	A	6566.77	.	AC=1;AF=0.500;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	0/1:106,277:0.72:383
chr19	53015487	rs35772645	AG	A	7693.73	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:113,242:0.68:355
chr19	53075519	rs8104138	G	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=-0.131;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:57,15:0.21:72
chr19	53075734	rs3826655	C	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.556;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.212;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr19	53077411	rs162832	T	C	1500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=4.105;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-2.249;QD=4.62;ReadPosRankSum=-0.685;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:233,92:0.28:325
chr19	53085416	rs12975229	G	A	1145.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:145,62:0.30:207
chr19	53085659	rs366793	C	T	3019.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:361,165:0.31:526
chr19	53085813	rs3745101	T	C	1755.77	.	AC=1;AF=0.500;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	0/1:184,93:0.34:277
chr19	53086124	rs373554	C	A	2300.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:243,132:0.35:375
chr19	53086598	rs3745102	G	A	1003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=383;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.01;MQRankSum=-10.344;QD=2.63;ReadPosRankSum=-0.815;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:303,78:0.20:381
chr19	53099965	rs2279151	A	G	582.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.444;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=0.307;SOR=0.571;set=HC	GT:AD:AF:DP	0/1:61,19:0.24:80
chr19	53099975	rs2279152	C	G	674.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.134;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.42;ReadPosRankSum=-0.350;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:68,23:0.25:91
chr19	53100323	rs7250630	A	G	1722.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.213;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.955;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.897;QD=4.26;ReadPosRankSum=1.577;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:289,115:0.28:404
chr19	53100377	rs7250969	G	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:231,102:0.31:333
chr19	53100585	rs1802617	G	T	2093.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:276,126:0.31:402
chr19	53116933	.	GCCACACTCATTACATTTGTAAGGTTTCTCTCCAGTGTGGATTCTCTGATGTTGTGCAAGGTGTGAAATATGATGGAAGACCTTT	G	5714.73	.	AC=2;AF=1.00;AN=2;DP=215;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.53;QD=27.21;SOR=0.834;set=HC	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	53117017	.	T	G	1645	.	AC=2;AF=1.00;AN=2;BRF=0.51;FR=1.0000;HP=2;HapScore=1;MGOF=6;MMLQ=28;MQ=58.34;NF=28;NR=39;PP=1645;QD=25.0712121276;SC=GGAAGACCTTTCCACATACAT;SbPval=0.48;Source=Platypus;TC=69;TCF=28;TCR=41;TR=67;WE=53117025;WS=53117007;set=Platypus	GT:AD:AF:DP	1/1:2,67:0.97:69
chr19	53117531	rs1056185	C	T	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	53117809	rs10406458	C	A	4081.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr19	53270384	rs1820128	A	G	3713.77	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:365,203:0.36:568
chr19	53303527	rs8107444	A	G	12074.77	.	AC=2;AF=1.00;AN=2;DB;DP=465;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,463:1.00:463
chr19	53303705	rs10417163	T	G	10351.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	53304563	rs13382164	T	C	6303.77	.	AC=1;AF=0.500;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	0/1:144,274:0.66:418
chr19	53311395	rs7257656	G	A	12862.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr19	53344118	rs10419826	C	G	9654.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.04;QD=28.48;SOR=0.699;set=HC	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	53345321	rs8100893	T	G	20314.77	.	AC=2;AF=1.00;AN=2;DB;DP=786;set=Intersection	GT:AD:AF:DP	1/1:2,783:1.00:785
chr19	53345414	rs8100996	T	A	11520.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	1/1:1,423:1.00:424
chr19	53351266	rs7256165	C	T	4106.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	53369486	rs35128688	CAT	C	822.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,27:0.64:42
chr19	53370013	rs12973227	C	G	3172.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:67,145:0.68:212
chr19	53370122	rs71700464	CAAAAAA	C	497.76	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.551;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.80;MQRankSum=0.612;QD=29.28;ReadPosRankSum=-1.648;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr19	53384185	rs6509701	C	T	5751.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:113,251:0.69:364
chr19	53391549	rs200638171	A	T	312.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.715;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=38.54;MQRankSum=-0.273;QD=22.34;ReadPosRankSum=-0.181;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:3,11:0.79:14
chr19	53411347	rs7256037	C	A	2423.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.483;ClippingRankSum=0.000;DB;DP=630;ExcessHet=3.0103;FS=2.098;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=1.080;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:477,150:0.24:627
chr19	53411368	rs7256260	G	A	2232.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;ClippingRankSum=0.000;DB;DP=593;ExcessHet=3.0103;FS=2.983;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.78;ReadPosRankSum=0.832;SOR=0.947;set=HC	GT:AD:AF:DP	0/1:447,144:0.24:591
chr19	53411448	rs7256400	G	A	1135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.498;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=-0.047;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:191,70:0.27:261
chr19	53452965	rs3745177	C	T	477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.709;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=6.296;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.10;ReadPosRankSum=-0.484;SOR=1.299;set=HC	GT:AD:AF:DP	0/1:120,34:0.22:154
chr19	53453777	rs8110062	C	T	2313.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919;ClippingRankSum=0.000;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.116;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:352,136:0.28:488
chr19	53454475	rs33949217	C	CACT	3480.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.175;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=0.440;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.03;ReadPosRankSum=0.904;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:248,99:0.29:347
chr19	53454789	rs12459008	A	T	2316.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:251,133:0.35:384
chr19	53456490	rs66502718	C	CA	165.73	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,15:0.34:44
chr19	53518627	rs1661940	G	C	1076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.093;ClippingRankSum=0.000;DB;DP=237;ExcessHet=3.0103;FS=1.106;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-0.424;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:169,68:0.29:237
chr19	53552435	rs1661937	C	T	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.65;QD=23.68;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	53553125	rs150642692	C	T	10826.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	53553497	rs2195311	G	A	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=30.44;SOR=5.283;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	53553686	rs12975552	G	A	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr19	53553992	rs73935209	C	A	1777.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;ClippingRankSum=0.000;DB;DP=585;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.04;ReadPosRankSum=1.137;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:453,131:0.22:584
chr19	53576465	rs329734	C	G	394.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:46,21:0.31:67
chr19	53576589	rs329733	C	G	2984.77	.	AC=1;AF=0.500;AN=2;DB;DP=555;set=Intersection	GT:AD:AF:DP	0/1:374,178:0.32:552
chr19	53577419	rs8105668	G	C	432.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr19	53577668	rs167918	C	G	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.220;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=13.207;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.92;ReadPosRankSum=2.935;SOR=3.375;set=HC	GT:AD:AF:DP	0/1:47,9:0.16:56
chr19	53589677	rs329718	C	T	1426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.557;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=0.447;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.39;ReadPosRankSum=0.374;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:233,92:0.28:325
chr19	53611802	rs61733666	T	G	1449.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.574;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.62;ReadPosRankSum=-1.992;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:304,96:0.24:400
chr19	53612311	rs4803051	T	C	1435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DB;DP=326;ExcessHet=3.0103;FS=2.672;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.40;ReadPosRankSum=0.743;SOR=0.542;set=HC	GT:AD:AF:DP	0/1:232,94:0.29:326
chr19	53612745	rs1133327	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:177,76:0.30:253
chr19	53612757	rs1054485	T	G	1488.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:178,82:0.32:260
chr19	53618698	rs12609961	C	T	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	53625645	rs34974523	C	T	682.77	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:67,36:0.35:103
chr19	53645291	rs2195310	T	C	8802.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr19	53651845	rs10694633	T	TTC	5318.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	53667637	rs4803054	C	T	370.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr19	53667804	rs4801958	C	T	2376.77	.	AC=1;AF=0.500;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	0/1:285,138:0.33:423
chr19	53667913	rs12459469	A	G	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.426;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=1.330;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.89;ReadPosRankSum=-1.379;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:271,112:0.29:383
chr19	53667940	rs12459471	A	G	1565.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=405;ExcessHet=3.0103;FS=1.282;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=-1.637;SOR=0.559;set=HC	GT:AD:AF:DP	0/1:297,106:0.26:403
chr19	53669273	rs4801959	T	C	1114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;ClippingRankSum=0.000;DB;DP=285;ExcessHet=3.0103;FS=2.292;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.95;ReadPosRankSum=1.580;SOR=0.884;set=HC	GT:AD:AF:DP	0/1:206,76:0.27:282
chr19	53669492	rs12460170	A	G	1261.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.22;ReadPosRankSum=0.540;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:217,82:0.27:299
chr19	53669653	rs12460233	C	T	148.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,8:0.27:30
chr19	53678924	rs4289099	C	A	558.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.319;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=10.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.262;SOR=1.988;set=HC	GT:AD:AF:DP	0/1:84,29:0.26:113
chr19	53707289	rs7249771	C	T	2426.77	.	AC=1;AF=0.500;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	0/1:307,139:0.31:446
chr19	53733328	.	C	CT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.391;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.445;QD=1.64;ReadPosRankSum=1.096;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,12:0.28:43
chr19	53784647	rs11084232	G	A	100.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;MQ=58.27;set=Intersection	GT:AD:AF:DP	0/1:21,7:0.25:28
chr19	53784704	rs55943466	G	A	979.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.069;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=-3.109;QD=10.42;ReadPosRankSum=0.678;SOR=0.609;set=HC	GT:AD:AF:DP	0/1:66,28:0.30:94
chr19	53784709	rs57846138	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.55;MQRankSum=-2.997;QD=10.27;ReadPosRankSum=0.264;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:68,31:0.31:99
chr19	53784788	rs28669322	G	A	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:150,58:0.28:208
chr19	53784899	rs75521956	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:48,17:0.26:65
chr19	53786255	rs8102543	G	T	2074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.317;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=1.186;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.18;ReadPosRankSum=0.994;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:163,63:0.28:226
chr19	53786258	rs8102246	A	T	2040.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=2.704;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.36;ReadPosRankSum=1.995;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:157,61:0.28:218
chr19	53787375	rs113804227	C	T	2132.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=0.437;QD=4.19;ReadPosRankSum=-1.850;SOR=0.647;set=HC	GT:AD:AF:DP	0/1:368,141:0.28:509
chr19	53793042	rs8109165	G	A	12001.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr19	53793574	rs2865248	A	G	5810.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	53802455	rs1965722	G	A	130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.694;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=12.842;MLEAC=1;MLEAF=0.500;MQ=46.83;MQRankSum=-3.824;QD=5.69;ReadPosRankSum=-1.644;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:16,7:0.30:23
chr19	53803121	rs75059813	C	G	6978.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr19	53849446	rs4803089	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	53849632	rs11406858	G	GC	3679.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	53849700	rs4803090	G	A	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	53856349	rs55874600	A	T	12029.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr19	53888388	rs2708713	T	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:19,14:0.42:33
chr19	53905129	rs111753331	TA	T	759.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=1.694;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=5.63;ReadPosRankSum=-0.523;SOR=0.477;set=HC	GT:AD:AF:DP	0/1:60,75:0.56:135
chr19	53905469	rs3975046	A	G	5141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.425;ClippingRankSum=0.000;DB;DP=335;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-0.988;QD=15.58;ReadPosRankSum=1.799;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:105,225:0.68:330
chr19	53905501	rs72582439	CTTTTT	C	1241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.018;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=9.749;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.438;QD=26.99;ReadPosRankSum=2.662;SOR=2.209;set=HC	GT:AD:AF:DP	0/1:9,37:0.80:46
chr19	53905578	.	C	T	342	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=2;MGOF=23;MMLQ=28;MQ=59.02;NF=1;NR=18;PP=342;QD=19.8300638183;SC=GGCATGATCTCGGCTCACGGC;SbPval=0.97;Source=Platypus;TC=57;TCF=10;TCR=47;TR=19;WE=53905586;WS=53905568;set=Platypus	GT:AD:AF:DP	0/1:38,19:0.33:57
chr19	53910912	rs2061773	G	A	1826.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:36,76:0.68:112
chr19	53911973	rs10425136	A	G	15045.77	.	AC=1;AF=0.500;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	0/1:219,652:0.75:871
chr19	53912242	rs10426347	G	A	10454.77	.	AC=1;AF=0.500;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	0/1:216,465:0.68:681
chr19	53926318	rs36087592	T	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.271;MLEAC=1;MLEAF=0.500;MQ=50.50;MQRankSum=0.943;QD=5.01;ReadPosRankSum=-0.666;SOR=0.957;set=HC	GT:AD:AF:DP	0/1:44,12:0.21:56
chr19	53926320	rs34818233	T	G	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.929;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.385;MLEAC=1;MLEAF=0.500;MQ=49.30;MQRankSum=0.447;QD=5.10;ReadPosRankSum=-0.336;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:46,9:0.16:55
chr19	53958126	rs2708743	T	G	12022.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:1,436:1.00:437
chr19	53958263	rs1984432	G	A	15727.77	.	AC=2;AF=1.00;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	1/1:0,592:1.00:592
chr19	53959343	rs2708742	G	A	4484.77	.	AC=1;AF=0.500;AN=2;DB;DP=780;set=Intersection	GT:AD:AF:DP	0/1:530,248:0.32:778
chr19	53959568	rs2617726	G	C	3604.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=1.220;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.693;QD=5.01;ReadPosRankSum=-1.048;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:506,213:0.30:719
chr19	53983591	.	C	CATA	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.493;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.27;MQRankSum=-6.268;QD=4.50;ReadPosRankSum=-2.086;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:53,12:0.18:65
chr19	53995004	rs2708845	G	A	2196.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;MQ=59.98;set=Intersection	GT:AD:AF:DP	0/1:260,125:0.32:385
chr19	54007145	rs72487103	G	A	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:4,211:0.98:215
chr19	54072757	rs3746304	C	T	3023.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	54072782	rs3746303	T	C	1582.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	54080144	rs8109631	A	G	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr19	54105521	.	GGT	G,GGTGT	127.79	.	AC=1,0;AF=0.500,0.00;AN=2;DP=28;set=Intersection	GT:AF:DP	0/1:0.78:9
chr19	54172299	rs373606661	A	G	71.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.49;QD=23.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	54172317	rs1968439	A	G	73.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=24.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	54182249	rs7256893	T	C	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=-1.159;QD=4.73;ReadPosRankSum=0.467;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:243,107:0.31:350
chr19	54185306	rs28542169	A	G	492.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=2.655;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.73;ReadPosRankSum=-0.104;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:96,36:0.27:132
chr19	54185311	rs28653280	C	T	1355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.387;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.55;ReadPosRankSum=-1.356;SOR=0.842;set=HC	GT:AD:AF:DP	0/1:98,44:0.31:142
chr19	54188219	rs2060230	G	A	8416.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,318:1.00:318
chr19	54197633	rs10413288	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:81,38:0.32:119
chr19	54197761	rs10415265	T	C	2183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.09;ReadPosRankSum=-0.553;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:293,136:0.32:429
chr19	54198461	rs11672638	A	G	602.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.795;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=3.385;MLEAC=1;MLEAF=0.500;MQ=59.89;MQRankSum=1.154;QD=1.92;ReadPosRankSum=0.539;SOR=0.974;set=HC	GT:AD:AF:DP	0/1:258,56:0.18:314
chr19	54198559	rs10420348	A	G	963.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.790;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=2.442;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=-0.849;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:207,68:0.25:275
chr19	54200922	rs57056811	T	C	1024.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:53,51:0.49:104
chr19	54201810	.	GT	G	454.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.191;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.668;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=0.000;QD=9.09;ReadPosRankSum=1.060;SOR=0.392;set=HC	GT:AD:AF:DP	0/1:19,31:0.62:50
chr19	54203199	rs2116850	G	A	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	0/1:227,103:0.31:330
chr19	54204650	.	G	GT	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;ClippingRankSum=0.000;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=1.704;SOR=0.663;set=HC	GT:AD:AF:DP	0/1:90,26:0.22:116
chr19	54205961	rs10414727	T	A	1131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.005;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.531;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.12;ReadPosRankSum=0.961;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:151,70:0.32:221
chr19	54209600	rs4803164	A	G	6829.77	.	AC=2;AF=1.00;AN=2;DB;DP=263;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr19	54209679	rs7251827	T	A	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	54215465	rs4803166	C	G	146.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.993;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=1.448;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr19	54216777	rs5828551	T	TTTTG	1464.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.640;MLEAC=1;MLEAF=0.500;MQ=60.92;MQRankSum=5.038;QD=11.91;ReadPosRankSum=0.245;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:76,47:0.38:123
chr19	54216813	rs2865855	A	T	732.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.039;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.479;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.05;ReadPosRankSum=-0.353;SOR=0.265;set=HC	GT:AD:AF:DP	0/1:52,39:0.43:91
chr19	54219769	rs4801998	G	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-1.218;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:82,31:0.27:113
chr19	54220019	rs11306531	GT	G	513.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=1.802;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:112,50:0.31:162
chr19	54224191	rs12973211	A	G	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr19	54224285	rs58416318	CA	C	8982.73	.	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.23;QD=22.51;SOR=0.969;set=HC	GT:AD:AF:DP	1/1:0,399:1.00:399
chr19	54225616	rs10426037	T	A	660.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr19	54240015	rs73053529	C	T	10157.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=737;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=1.191;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:258,474:0.65:732
chr19	54242693	rs140276616	G	GCTGACCGTGGTAATA	3829.73	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:54,97:0.64:151
chr19	54242761	rs60519699	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:35,44:0.56:79
chr19	54244423	rs4802001	A	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:14,25:0.64:39
chr19	54245706	rs61217982	G	C	3616.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:77,166:0.68:243
chr19	54245788	rs56013413	G	A	4287.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:92,194:0.68:286
chr19	54245897	rs73602947	A	T	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:23,55:0.71:78
chr19	54245935	rs146905912	GT	G	548.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=1.468;MLEAC=1;MLEAF=0.500;MQ=59.51;MQRankSum=0.028;QD=12.47;ReadPosRankSum=-1.232;SOR=1.121;set=HC	GT:AD:AF:DP	0/1:11,33:0.75:44
chr19	54255878	rs56196717	GTTT	G,GT	1410.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.16;QD=32.81;SOR=2.833;set=HC	GT:AD:AF:DP	1/2:0,31,12:0.72,0.28:43
chr19	54257185	rs611356	C	A,G	5363.77	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=2.820;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.69;MQRankSum=8.125;QD=41.26;ReadPosRankSum=2.424;SOR=1.802;set=HC	GT:AD:AF:DP	1/2:2,97,31:0.75,0.24:130
chr19	54257185	.	CCAATAC	ACAATGA,GCAATGA	1410	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=3;HapScore=1;MGOF=3;MMLQ=25;MQ=59.26;NF=60,19;NR=25,11;PP=1410,289;QD=17.3349161748;SC=GCAAACAGGGCCAATACATGC;SbPval=0.61;Source=Platypus;TC=122;TCF=84;TCR=38;TR=85,30;WE=54257199;WS=54257175;set=Platypus	GT:AF:DP	0/1:0.70:122
chr19	54257190	rs62144158	AC	GA	5983.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.046;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=2.644;JOINED;MLEAC=2;MLEAF=1.000;MQ=59.70;MQRankSum=8.308;QD=44.00;ReadPosRankSum=2.905;SOR=1.681;set=HC	GT:AD:AF:DP	1/1:2,134:0.99:136
chr19	54261644	rs3901466	C	T	107.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.154;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.796;MLEAC=1;MLEAF=0.500;MQ=57.95;MQRankSum=0.000;QD=2.25;ReadPosRankSum=0.093;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr19	54307322	rs12460528	G	A	15285.77	.	AC=2;AF=1.00;AN=2;DB;DP=585;set=Intersection	GT:AD:AF:DP	1/1:0,583:1.00:583
chr19	54308554	rs4806773	C	T	5954.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	54308775	rs34166148	C	CT	267.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.385;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.87;ReadPosRankSum=0.763;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:13,21:0.62:34
chr19	54310707	rs144019790	C	T	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:57,22:0.28:79
chr19	54310961	rs2866112	G	C	5232.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	54311090	rs11084300	C	T	1088.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr19	54314585	rs6509827	G	A	2531.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	54327440	rs4539722	G	A	5479.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr19	54385437	rs307942	A	C	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chr19	54385820	rs2547362	C	T	9989.77	.	AC=2;AF=1.00;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr19	54387313	rs307956	A	T	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.822;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	54396006	.	G	GCA	341.73	.	AC=1;AF=0.500;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	0/1:56,19:0.25:75
chr19	54409783	rs73603631	G	C	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:21,37:0.64:58
chr19	54445594	rs11324363	AG	A	9659.73	.	AC=1;AF=0.500;AN=2;DB;DP=626;set=Intersection	GT:AD:AF:DP	0/1:213,362:0.63:575
chr19	54483311	rs71949256	CGT	C	323.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.634;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.013;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=1.460;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:80,27:0.25:107
chr19	54483339	rs12979538	T	C	1431.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.195;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=-0.339;SOR=1.044;set=HC	GT:AD:AF:DP	0/1:38,69:0.64:107
chr19	54483339	.	TGC	CGC	1239	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=23;MQ=59.37;NF=19,0;NR=68,28;PP=1239,224;QD=14.6410484201;SC=TGTGTGTGTGTGCGCGCGCGC;SbPval=0.53;Source=Platypus;TC=133;TCF=29;TCR=104;TR=87,28;WE=54483348;WS=54483329;set=Platypus	GT:AD:AF:DP	0/1:46,87:0.65:133
chr19	54483339	.	TGC	T	1239	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=1.0000,0.5000;HP=2;HapScore=1;MGOF=13;MMLQ=23;MQ=59.37;NF=19,0;NR=68,28;PP=1239,224;QD=14.6410484201;SC=TGTGTGTGTGTGCGCGCGCGC;SbPval=0.53;Source=Platypus;TC=133;TCF=29;TCR=104;TR=87,28;WE=54483348;WS=54483329;set=Platypus	GT:AD:AF:DP	0/1:77,28:0.27:105
chr19	54501527	rs34604090	G	A	3016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.39;ReadPosRankSum=1.771;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:60,136:0.69:196
chr19	54502786	rs7247590	G	A	1810.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,79:0.69:115
chr19	54544177	rs1035829	C	T	782.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.868;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.10;ReadPosRankSum=1.623;SOR=0.498;set=HC	GT:AD:AF:DP	0/1:45,41:0.48:86
chr19	54544189	rs2303558	C	T	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.764;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=-1.585;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:39,46:0.54:85
chr19	54545186	rs73058793	C	T	2735.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:61,128:0.68:189
chr19	54545274	rs67563163	G	T	1299.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:26,55:0.68:81
chr19	54545390	rs34610948	A	AC	2489.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,70:0.76:92
chr19	54545531	rs2433724	T	C	2105.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:47,96:0.67:143
chr19	54554942	rs4442924	C	A	146.90	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr19	54561385	rs11673528	T	C	178.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:33,11:0.25:44
chr19	54561493	.	T	TAAAAAAAAAAA	353.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.642;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=5.677;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.572;SOR=1.292;set=HC	GT:AD:AF:DP	0/1:210,26:0.11:236
chr19	54561792	rs11669427	G	A	1323.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:131,74:0.36:205
chr19	54566901	rs662850	C	T	11568.77	.	AC=1;AF=0.500;AN=2;DB;DP=729;set=Intersection	GT:AD:AF:DP	0/1:213,515:0.71:728
chr19	54579363	rs4806706	C	A	2035.77	.	AC=1;AF=0.500;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	0/1:288,123:0.30:411
chr19	54600232	rs1657535	A	C	5534.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.74;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,207:1.00:207
chr19	54604194	rs3760698	G	C	4632.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:89,211:0.70:300
chr19	54604319	rs7253859	A	G	239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.177;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=3.627;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.45;ReadPosRankSum=0.103;SOR=0.229;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chr19	54606209	rs254260	T	G	3800.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	54606405	rs254259	T	C	5617.77	.	AC=1;AF=0.500;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	0/1:131,235:0.64:366
chr19	54609027	rs254257	A	G	7930.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:142,342:0.71:484
chr19	54609170	rs254256	A	G	16252.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.38;ReadPosRankSum=0.728;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:217,399:0.65:616
chr19	54609178	rs254255	C	G	17304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.063;ClippingRankSum=0.000;DB;DP=704;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.65;ReadPosRankSum=0.869;SOR=0.700;set=HC	GT:AD:AF:DP	0/1:248,454:0.65:702
chr19	54609692	rs254266	T	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;MQ=59.17;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chr19	54609746	rs8100254	G	C	821.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:17,37:0.69:54
chr19	54611283	rs77147173	C	A	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:74,43:0.37:117
chr19	54611287	rs621147	G	A	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:44,77:0.64:121
chr19	54611560	rs254263	C	G	1680.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:47,74:0.61:121
chr19	54611734	rs75622830	A	G	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:195,82:0.30:277
chr19	54627039	rs35291886	GCACA	G	2748.73	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:30,70:0.70:100
chr19	54627097	rs2303557	T	C	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr19	54627915	rs11556769	C	T	4359.77	.	AC=1;AF=0.500;AN=2;DB;DP=757;set=Intersection	GT:AD:AF:DP	0/1:467,283:0.38:750
chr19	54628075	rs76781318	G	A	500.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=32.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=-0.364;SOR=2.574;set=HC	GT:AD:AF:DP	0/1:168,54:0.24:222
chr19	54629809	.	G	C	2657.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DP=479;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=0.061;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:322,155:0.32:477
chr19	54631376	rs12977981	G	T	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.35;ReadPosRankSum=2.305;SOR=1.371;set=HC	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	54631376	.	GGT	TGC	531	.	AC=1;AF=0.500;AN=2;BRF=0.09;FR=0.5000;HP=5;HapScore=2;MGOF=2;MMLQ=23;MQ=60.0;NF=12;NR=5;PP=531;QD=34.3804632272;SC=ATACTCGGGGGGTCCGCTCAG;SbPval=0.77;Source=Platypus;TC=25;TCF=16;TCR=9;TR=17;WE=54631389;WS=54631366;set=Platypus	GT:AD:AF:DP	0/1:8,17:0.68:25
chr19	54631378	rs171703	T	C	1093.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.75;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr19	54631381	rs45513391	G	A	256.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.567;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.760;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.27;ReadPosRankSum=-2.836;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:17,8:0.32:25
chr19	54631877	.	T	TC	185	.	AC=2;AF=1.00;AN=2;BRF=0.3;FR=1.0000;HP=4;HapScore=2;MGOF=26;MMLQ=29;MQ=60.49;NF=1;NR=12;PP=185;QD=16.4615384615;SC=TGCCCCAGCCTCCTCCCCCCC;SbPval=0.56;Source=Platypus;TC=16;TCF=1;TCR=15;TR=13;WE=54631888;WS=54631867;set=Platypus	GT:AD:AF:DP	1/1:3,13:0.81:16
chr19	54631880	rs74716353	T	C	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr19	54632352	rs608608	C	G	2095.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr19	54632423	rs655240	T	C	3598.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	54634830	rs62144168	C	T	1081.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.080;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=1.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=2.372;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:171,71:0.29:242
chr19	54647078	rs34281370	T	TGG	282.73	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,12:0.38:32
chr19	54649671	rs36665	T	C	21682.77	.	AC=2;AF=1.00;AN=2;DB;DP=949;set=Intersection	GT:AD:AF:DP	1/1:27,870:0.97:897
chr19	54651774	rs35247489	C	T	1106.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:25,46:0.65:71
chr19	54652203	rs43211	T	C	7611.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:2,285:0.99:287
chr19	54653572	rs36661	C	T	1414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.118;QD=5.16;ReadPosRankSum=-1.576;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:189,85:0.31:274
chr19	54653597	rs1611078	CTT	C	1700.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.258;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.238;QD=9.61;ReadPosRankSum=-0.198;SOR=0.515;set=HC	GT:AD:AF:DP	0/1:126,51:0.29:177
chr19	54657069	rs42318	C	T	4065.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.236;ClippingRankSum=0.000;DB;DP=778;ExcessHet=3.0103;FS=1.227;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.23;ReadPosRankSum=0.831;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:549,228:0.29:777
chr19	54657877	rs4806718	T	C	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:53,101:0.66:154
chr19	54664209	rs36657	G	C	1245.77	.	AC=1;AF=0.500;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	0/1:157,71:0.31:228
chr19	54664752	rs36656	A	C	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:198,97:0.33:295
chr19	54665970	rs36655	C	T	625.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.417;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=2.248;SOR=0.797;set=HC	GT:AD:AF:DP	0/1:145,43:0.23:188
chr19	54666060	rs12978996	T	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chr19	54666357	rs2289146	C	G	850.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:5,33:0.87:38
chr19	54667748	rs36654	G	A	296.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	54672460	rs6509847	C	T	1242.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.50;ReadPosRankSum=0.317;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:15,56:0.79:71
chr19	54672539	rs12986309	T	C	540.74	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.217;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;MQRankSum=0.000;QD=31.81;ReadPosRankSum=-1.143;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr19	54672540	rs12984490	C	T	540.74	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.397;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;MQRankSum=0.000;QD=31.81;ReadPosRankSum=-1.143;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:1,16:0.94:17
chr19	54676763	rs641738	C	T	2343.77	.	AC=1;AF=0.500;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	0/1:285,134:0.32:419
chr19	54676814	.	G	GC	1227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DP=199;ExcessHet=3.0103;FS=3.999;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=2.674;QD=6.67;ReadPosRankSum=-2.291;SOR=0.420;set=HC	GT:AD:AF:DP	0/1:129,55:0.30:184
chr19	54677759	rs4806721	T	C	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	54687334	rs254283	C	G	1644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.677;ClippingRankSum=0.000;DB;DP=329;ExcessHet=3.0103;FS=6.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.041;SOR=1.043;set=HC	GT:AD:AF:DP	0/1:232,95:0.29:327
chr19	54691225	rs1865961	T	C	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:103,41:0.28:144
chr19	54694334	rs16985457	G	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:70,30:0.30:100
chr19	54697079	rs7595	C	T	560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.757;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.824;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:93,38:0.29:131
chr19	54697602	rs36622	G	A	793.77	.	AC=1;AF=0.500;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	0/1:78,41:0.34:119
chr19	54705317	rs158366	C	G	1037.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:27,41:0.60:68
chr19	54705340	rs2304524	C	G	900.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:26,38:0.59:64
chr19	54705588	rs17305304	A	G	3784.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:61,165:0.73:226
chr19	54705619	rs36614	A	G	3218.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr19	54705641	rs17305311	T	C	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:11,55:0.83:66
chr19	54711258	rs2304523	T	G	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	54722275	rs1132609	G	A	1266.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.362;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=-1.179;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:180,75:0.29:255
chr19	54723355	rs255774	A	G	7559.77	.	AC=1;AF=0.500;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	0/1:119,309:0.72:428
chr19	54723738	rs255772	G	C	7652.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.21;QD=27.23;SOR=1.103;set=HC	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	54723813	rs8101337	G	C	3535.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.688;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=13.842;MLEAC=1;MLEAF=0.500;MQ=57.84;MQRankSum=-7.381;QD=16.07;ReadPosRankSum=-1.609;SOR=1.345;set=HC	GT:AD:AF:DP	0/1:122,98:0.45:220
chr19	54723822	rs2885369	GT	AC	3230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.919;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=11.285;JOINED;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-8.289;QD=14.42;ReadPosRankSum=-2.919;SOR=1.178;set=HC	GT:AD:AF:DP	0/1:137,87:0.39:224
chr19	54723829	rs4023903	C	T	2924.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.763;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=8.008;MLEAC=1;MLEAF=0.500;MQ=57.88;MQRankSum=-9.218;QD=13.06;ReadPosRankSum=-3.745;SOR=1.087;set=HC	GT:AD:AF:DP	0/1:148,76:0.34:224
chr19	54723887	.	AC	A	2975	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.9988;HP=6;HapScore=1;MGOF=9;MMLQ=23;MQ=57.94;NF=3;NR=50;PP=2975;QD=20;SC=CTCTGCCTCGACCCCCCACTC;SbPval=0.64;Source=Platypus;TC=63;TCF=4;TCR=59;TR=53;WE=54723906;WS=54723877;set=Platypus	GT:AD:AF:DP	0/1:10,53:0.84:63
chr19	54723891	.	C	CCG	5627.73	.	AC=2;AF=1.00;AN=2;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.12;QD=44.66;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr19	54723893	.	CACT	C	5581.73	.	AC=2;AF=1.00;AN=2;ClippingRankSum=0.000;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.86;MQRankSum=3.403;QD=44.30;SOR=0.517;set=HC	GT:AD:AF:DP	1/1:1,125:0.99:126
chr19	54723898	rs149120972	T	C	5506.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.052;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.84;MQRankSum=3.379;QD=44.41;ReadPosRankSum=1.565;SOR=0.524;set=HC	GT:AD:AF:DP	1/1:1,123:0.99:124
chr19	54724006	rs4806726	C	A	973.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:16,41:0.72:57
chr19	54725798	rs75069054	G	T	123.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.588;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=10.710;MLEAC=1;MLEAF=0.500;MQ=42.86;MQRankSum=-1.548;QD=8.84;ReadPosRankSum=-0.792;SOR=3.912;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chr19	54725835	rs201948566	G	C	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.93;QD=30.21;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	54726162	rs56182917	T	G	239.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.54;QD=29.97;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	54726226	rs75672336	T	C	6593.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.87;QD=35.26;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	54726241	rs77279742	C	T	1927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.71;MQRankSum=-4.881;QD=9.89;ReadPosRankSum=-1.183;SOR=0.712;set=HC	GT:AD:AF:DP	0/1:92,103:0.53:195
chr19	54726665	rs373978777	G	A	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.05;QD=27.28;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr19	54726701	rs200031404	G	GTCC	1562.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.50;QD=44.65;SOR=2.115;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr19	54726711	rs140063405	G	T	1604.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.61;QD=43.37;SOR=2.012;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	54726816	rs80332440	A	T	3385.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:82,158:0.66:240
chr19	54726833	rs149695852	T	C	6167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=2.914;MLEAC=1;MLEAF=0.500;MQ=50.34;MQRankSum=4.056;QD=24.77;ReadPosRankSum=1.690;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:92,157:0.63:249
chr19	54726839	rs141453251	C	T	6186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.050;ClippingRankSum=0.000;DB;DP=251;ExcessHet=3.0103;FS=2.164;MLEAC=1;MLEAF=0.500;MQ=50.26;MQRankSum=4.191;QD=24.65;ReadPosRankSum=0.885;SOR=0.595;set=HC	GT:AD:AF:DP	0/1:98,153:0.61:251
chr19	54726843	rs138124247	C	G	6075.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.197;ClippingRankSum=0.000;DB;DP=254;ExcessHet=3.0103;FS=2.151;MLEAC=1;MLEAF=0.500;MQ=50.24;MQRankSum=4.209;QD=23.92;ReadPosRankSum=0.115;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:103,151:0.59:254
chr19	54726861	rs114813697	C	T	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:118,142:0.55:260
chr19	54726872	rs140228691	C	G	2546.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.968;ClippingRankSum=0.000;DB;DP=241;ExcessHet=3.0103;FS=2.177;MLEAC=1;MLEAF=0.500;MQ=49.77;MQRankSum=3.712;QD=10.66;ReadPosRankSum=-3.735;SOR=0.845;set=HC	GT:AD:AF:DP	0/1:114,125:0.52:239
chr19	54735619	rs7250243	G	A	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;ClippingRankSum=0.000;DB;DP=422;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.91;ReadPosRankSum=-1.285;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:326,95:0.23:421
chr19	54742738	rs448461	G	C	958.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.79;ReadPosRankSum=-1.599;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:188,65:0.26:253
chr19	54742999	rs8100079	C	A	2543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.627;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=1.401;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=-1.388;QD=6.17;ReadPosRankSum=-0.717;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:324,88:0.21:412
chr19	54743004	rs8099961	A	T	2511.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.546;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.738;QD=6.56;ReadPosRankSum=-0.529;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:302,81:0.21:383
chr19	54743057	rs73053480	G	A	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:94,89:0.49:183
chr19	54743517	rs199690478	G	A	1005.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DB;DP=634;ExcessHet=3.0103;FS=20.770;MLEAC=1;MLEAF=0.500;MQ=59.94;MQRankSum=-4.599;QD=1.59;ReadPosRankSum=-8.499;SOR=0.943;set=HC	GT:AD:AF:DP	0/1:532,101:0.16:633
chr19	54743747	rs10403230	C	G	3594.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:353,173:0.33:526
chr19	54743758	rs7246746	C	A	2961.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:270,139:0.34:409
chr19	54744104	rs11084326	T	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857;ClippingRankSum=0.000;DB;DP=324;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=1.135;QD=0.57;ReadPosRankSum=0.216;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:280,44:0.14:324
chr19	54744209	rs8105096	TA	CG	2836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=-0.540;QD=2.96;ReadPosRankSum=-3.343;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:829,129:0.13:958
chr19	54744361	rs2361801	A	C	3919.77	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:401,208:0.34:609
chr19	54744387	rs71263238	C	T	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:323,165:0.34:488
chr19	54745907	rs62133127	A	G	836.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.754;ClippingRankSum=0.000;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.54;MQRankSum=2.036;QD=4.31;ReadPosRankSum=0.108;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:138,56:0.29:194
chr19	54746051	rs620207	A	C	5818.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:447,308:0.41:755
chr19	54746081	rs28445220	T	C	5303.77	.	AC=1;AF=0.500;AN=2;DB;DP=789;set=Intersection	GT:AD:AF:DP	0/1:482,306:0.39:788
chr19	54746528	rs75130216	C	T	917.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891;ClippingRankSum=0.000;DB;DP=196;ExcessHet=3.0103;FS=1.889;MLEAC=1;MLEAF=0.500;MQ=50.15;MQRankSum=-3.068;QD=4.68;ReadPosRankSum=-0.822;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:134,62:0.32:196
chr19	54754752	rs433291	T	C	3976.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	54754820	rs429425	T	G	562.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr19	54754865	rs62133136	A	G	268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=50.19;MQRankSum=1.341;QD=14.93;ReadPosRankSum=1.882;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr19	54754942	rs142193233	G	A	86.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.915;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=2.398;MLEAC=1;MLEAF=0.500;MQ=47.87;MQRankSum=-0.389;QD=7.23;ReadPosRankSum=0.305;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:7,5:0.42:12
chr19	54754946	rs146755009	G	A	121.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.58;MQRankSum=1.132;QD=11.07;ReadPosRankSum=-1.876;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:4,7:0.64:11
chr19	54754973	rs200951199	T	A	79.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.645;ClippingRankSum=-0.000;DB;DP=5;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=44.37;MQRankSum=-1.645;QD=15.95;ReadPosRankSum=0.524;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:2,3:0.60:5
chr19	54754989	rs686335	T	G	49.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.50;QD=24.88;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:0,2:1.00:2
chr19	54754990	rs686334	C	G	49.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.50;QD=24.88;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:0,2:1.00:2
chr19	54755994	rs417523	G	A	9114.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,343:1.00:343
chr19	54756024	rs405443	A	C	5435.77	.	AC=1;AF=0.500;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	0/1:92,250:0.73:342
chr19	54756118	rs405152	A	G	3957.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	54756155	rs45446093	T	C	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:59,24:0.29:83
chr19	54756302	rs415860	A	G	4591.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	54756657	rs434755	C	T	12034.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr19	54759361	rs12975366	T	C	5466.77	.	AC=1;AF=0.500;AN=2;DB;DP=932;set=Intersection	GT:AD:AF:DP	0/1:615,317:0.34:932
chr19	54761007	rs3848615	C	G	2910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.244;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.78;ReadPosRankSum=1.954;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:430,179:0.29:609
chr19	54778694	rs62134981	G	A	392.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=58.55;MQRankSum=-1.487;QD=5.17;ReadPosRankSum=-0.132;SOR=0.862;set=HC	GT:AD:AF:DP	0/1:55,21:0.28:76
chr19	54781466	rs3859538	C	G	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:61,36:0.37:97
chr19	54781509	rs1808548	C	T	990.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.395;MLEAC=1;MLEAF=0.500;MQ=54.50;MQRankSum=7.018;QD=8.26;ReadPosRankSum=4.092;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:69,51:0.42:120
chr19	54781541	rs450937	C	T	2405.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:64,101:0.61:165
chr19	54781554	rs451000	C	T	4861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.401;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=1.169;MLEAC=1;MLEAF=0.500;MQ=57.49;MQRankSum=-4.933;QD=25.45;ReadPosRankSum=-2.284;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:70,121:0.63:191
chr19	54781557	rs400942	T	C	4935.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.531;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.139;MLEAC=1;MLEAF=0.500;MQ=57.82;MQRankSum=-4.706;QD=25.05;ReadPosRankSum=-1.078;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:73,124:0.63:197
chr19	54781843	rs4022330	C	T	650.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:90,37:0.29:127
chr19	54782407	rs1128646	C	T	3139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.628;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.819;QD=7.51;ReadPosRankSum=-0.164;SOR=0.905;set=HC	GT:AD:AF:DP	0/1:314,104:0.25:418
chr19	54782420	rs11666104	G	A	2956.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.471;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=0.443;MLEAC=1;MLEAF=0.500;MQ=59.95;MQRankSum=0.996;QD=7.91;ReadPosRankSum=-0.884;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:282,92:0.25:374
chr19	54782704	rs7247451	G	C	852.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.677;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=7.354;MLEAC=1;MLEAF=0.500;MQ=57.69;MQRankSum=-5.628;QD=10.93;ReadPosRankSum=-1.461;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:53,25:0.32:78
chr19	54782710	rs7247208	A	G	813.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.584;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=4.416;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-5.333;QD=9.69;ReadPosRankSum=-0.863;SOR=0.273;set=HC	GT:AD:AF:DP	0/1:59,25:0.30:84
chr19	54782724	rs7247538	G	A	683.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:80,36:0.31:116
chr19	54782919	rs386056	C	T	6754.77	.	AC=1;AF=0.500;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	0/1:165,310:0.65:475
chr19	54783375	rs373032	T	A	21498.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	1/1:0,801:1.00:801
chr19	54783521	rs383925	C	T	6463.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:131,279:0.68:410
chr19	54783923	rs366337	A	G	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	54786022	rs4112253	G	C	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.248;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=1.015;SOR=0.965;set=HC	GT:AD:AF:DP	0/1:35,13:0.27:48
chr19	54800222	rs368178	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.66;ReadPosRankSum=-1.913;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:18,12:0.40:30
chr19	54800225	rs368177	A	G	409.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.13;ReadPosRankSum=-2.030;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	54802693	rs73055462	C	T	3906.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:117,182:0.61:299
chr19	54803504	rs6509862	A	C	5230.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:89,238:0.73:327
chr19	54804167	rs11574606	G	A	1527.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.950;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.428;QD=4.87;ReadPosRankSum=-0.967;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:224,90:0.29:314
chr19	54848507	rs55873636	T	C	1992.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.981;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=-0.727;QD=24.01;ReadPosRankSum=-1.043;SOR=0.887;set=HC	GT:AD:AF:DP	0/1:30,53:0.64:83
chr19	54849399	rs10419832	T	C	1104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.103;ClippingRankSum=0.000;DB;DP=224;ExcessHet=3.0103;FS=3.323;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=-1.967;SOR=0.958;set=HC	GT:AD:AF:DP	0/1:156,67:0.30:223
chr19	54876324	rs3745441	T	C	1153.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;ClippingRankSum=0.000;DB;DP=298;ExcessHet=3.0103;FS=3.796;MLEAC=1;MLEAF=0.500;MQ=59.96;MQRankSum=0.827;QD=3.87;ReadPosRankSum=1.642;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:223,75:0.25:298
chr19	54881780	rs3852907	G	A	805.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:47,41:0.47:88
chr19	54881850	rs77507448	G	T	3075.77	.	AC=1;AF=0.500;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	0/1:131,155:0.54:286
chr19	54881922	rs4429394	G	A	3181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.467;ClippingRankSum=0.000;DB;DP=292;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.72;MQRankSum=7.364;QD=10.90;ReadPosRankSum=-0.308;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:198,94:0.32:292
chr19	54881931	rs10401703	T	C	3088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.272;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=1.003;MLEAC=1;MLEAF=0.500;MQ=53.93;MQRankSum=6.363;QD=11.66;ReadPosRankSum=-0.298;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:179,86:0.32:265
chr19	54882031	rs4281841	G	A	430.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.08;MQRankSum=0.484;QD=14.36;ReadPosRankSum=0.000;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:13,17:0.57:30
chr19	54882068	rs4021843	A	G	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.38;QD=30.31;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	54926249	rs17516390	T	C	1632.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	54930822	rs35134302	A	G	2426.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr19	54940303	rs3745428	T	A	1917.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	54962374	rs1035450	A	G	3927.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr19	54962467	rs1035451	G	A	9730.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	54962579	rs1035452	C	T	5178.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr19	54963813	rs3841263	CCT	C	9148.73	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	54964019	rs963352	C	T	2516.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr19	54965527	rs7247170	C	T	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	54965860	rs3813148	G	A	19946.77	.	AC=2;AF=1.00;AN=2;DB;DP=765;set=Intersection	GT:AD:AF:DP	1/1:0,761:1.00:761
chr19	54965889	rs3813147	G	C	13175.77	.	AC=2;AF=1.00;AN=2;DB;DP=515;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr19	54965907	rs3813146	C	T	10119.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr19	54966579	rs889147	C	G	9345.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	54971229	rs3745437	T	C	1526.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	54973280	rs10423424	C	G	2131.77	.	AC=1;AF=0.500;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	0/1:235,121:0.34:356
chr19	54973307	rs115799049	C	T	4836.77	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:108,218:0.67:326
chr19	54973988	rs140013148	GCCT	G	17043.73	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr19	54974202	rs201030893	C	T	1865.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:185,94:0.34:279
chr19	54974318	rs10406453	T	C	9587.77	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr19	54974328	.	AG	A	7644.73	.	AC=1;AF=0.500;AN=2;DP=370;set=Intersection	GT:AD:AF:DP	0/1:108,259:0.71:367
chr19	54974774	rs1981829	A	T	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr19	55009422	rs189289535	G	A	1752.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=3.911;MLEAC=1;MLEAF=0.500;MQ=51.65;MQRankSum=-1.822;QD=5.56;ReadPosRankSum=-0.055;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:209,106:0.34:315
chr19	55009497	rs3865495	A	C	4986.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:40,218:0.84:258
chr19	55019402	rs2277974	A	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:28,9:0.24:37
chr19	55043810	rs17606773	G	A	149.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr19	55044228	rs10553990	TTC	T	6819.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.44;QD=38.97;SOR=0.775;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	55044241	rs74177858	C	CT	889.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441;ClippingRankSum=0.000;DB;DP=181;ExcessHet=3.0103;FS=4.126;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=-2.268;QD=5.63;ReadPosRankSum=-1.121;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:82,76:0.48:158
chr19	55044387	rs62131628	T	C	43.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.151;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-1.622;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:37,7:0.16:44
chr19	55045042	rs61739186	G	A	1786.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;ClippingRankSum=0.000;DB;DP=363;ExcessHet=3.0103;FS=0.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=-0.434;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:256,106:0.29:362
chr19	55048270	rs17606836	C	T	4699.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:85,209:0.71:294
chr19	55049066	.	G	A	225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.128;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=4.821;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.53;ReadPosRankSum=0.775;SOR=2.376;set=HC	GT:AD:AF:DP	0/1:15,15:0.50:30
chr19	55049088	rs10632924	A	AAAAGAAAG,AAAAGAAAGAAAGAAAG	4210.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=58.48;SOR=2.239;set=HC	GT:AD:AF:DP	1/2:0,35,37:0.49,0.51:72
chr19	55049332	rs62131630	G	C	1111.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr19	55086106	rs45497601	C	G	3476.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:51,130:0.72:181
chr19	55142101	rs3760861	G	A	1270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=2.208;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-0.339;QD=4.25;ReadPosRankSum=-0.167;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:219,80:0.27:299
chr19	55142930	rs3843752	C	T	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:95,48:0.34:143
chr19	55143083	rs1061679	T	C	2357.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DB;DP=513;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=-3.936;QD=4.61;ReadPosRankSum=-1.799;SOR=0.768;set=HC	GT:AD:AF:DP	0/1:366,146:0.29:512
chr19	55143156	rs12462774	TG	CA	2885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;ClippingRankSum=0.000;DB;DP=560;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-3.936;QD=5.16;ReadPosRankSum=2.435;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:394,165:0.30:559
chr19	55143452	rs1061680	T	C	3244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.683;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.579;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-4.166;QD=4.79;ReadPosRankSum=1.840;SOR=0.613;set=HC	GT:AD:AF:DP	0/1:482,196:0.29:678
chr19	55143491	rs1061681	G	T	3804.77	.	AC=1;AF=0.500;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	0/1:491,224:0.31:715
chr19	55175009	rs11540761	G	T	557.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=2.956;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.72;ReadPosRankSum=-0.128;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr19	55175596	rs3050015	T	TGTGGGAG	11772.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	55175740	rs3745871	C	T	3157.77	.	AC=1;AF=0.500;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	0/1:449,189:0.30:638
chr19	55176262	rs731170	A	G	9182.77	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,349:1.00:349
chr19	55176535	rs1925241	C	T	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:67,32:0.32:99
chr19	55176702	rs1631746	A	C	1871.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.273;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.02;ReadPosRankSum=1.552;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:27,83:0.75:110
chr19	55178162	rs11574576	A	G	2529.77	.	AC=1;AF=0.500;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	0/1:229,135:0.37:364
chr19	55179364	rs1048801	A	G	1013.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:166,70:0.30:236
chr19	55239129	rs144626680	G	A	744.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.84;MQRankSum=-1.326;QD=8.46;ReadPosRankSum=-0.014;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:51,37:0.42:88
chr19	55239168	rs151236204	G	T	3265.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:78,156:0.67:234
chr19	55239176	rs199609975	G	A	1384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.64;MQRankSum=-3.070;QD=5.29;ReadPosRankSum=2.030;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:176,86:0.33:262
chr19	55239342	rs368077219	G	A	885.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.781;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.04;MQRankSum=0.503;QD=18.85;ReadPosRankSum=-0.916;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr19	55246731	rs77241525	C	A	4380.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr19	55246897	rs62132699	T	A	1128.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr19	55246909	rs62132700	G	A	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.98;QD=43.89;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr19	55246909	.	GCA	ACT	681	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=1;HapScore=1;MGOF=0;MMLQ=28;MQ=56.59;NF=11;NR=22;PP=681;QD=22.2566022686;SC=TTCCTCACAGGCAGGATGGTC;SbPval=0.52;Source=Platypus;TC=34;TCF=11;TCR=23;TR=33;WE=55246919;WS=55246887;set=Platypus	GT:AD:AF:DP	1/1:1,33:0.97:34
chr19	55246911	rs62132701	A	T	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.25;QD=45.10;SOR=1.547;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	55258778	rs34843749	G	A	1627.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.97;QD=27.13;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	55258808	rs35861855	C	T	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr19	55266447	rs2916031	A	G	129.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.27;QD=21.64;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr19	55266496	rs28715756	A	G	1053.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	55278630	rs2915996	G	C	11503.77	.	AC=2;AF=1.00;AN=2;DB;DP=422;set=Intersection	GT:AD:AF:DP	1/1:2,420:1.00:422
chr19	55281315	rs2304224	G	T	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr19	55284824	rs139078925	G	C	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.51;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	55284858	rs116929762	G	A	249.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.64;QD=27.75;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr19	55286767	.	G	T	265.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.518;ClippingRankSum=0.000;DP=286;ExcessHet=3.0103;FS=3.903;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-8.603;QD=0.93;ReadPosRankSum=4.072;SOR=0.390;set=HC	GT:AD:AF:DP	0/1:260,26:0.09:286
chr19	55286770	.	C	G	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.437;ClippingRankSum=0.000;DP=294;ExcessHet=3.0103;FS=2.721;MLEAC=1;MLEAF=0.500;MQ=56.53;MQRankSum=-8.870;QD=0.83;ReadPosRankSum=3.843;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:268,26:0.09:294
chr19	55286772	.	AAG	A	220.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.213;ClippingRankSum=0.000;DP=299;ExcessHet=3.0103;FS=2.710;MLEAC=1;MLEAF=0.500;MQ=56.64;MQRankSum=-9.076;QD=0.74;ReadPosRankSum=3.111;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:273,26:0.09:299
chr19	55286775	.	G	GCA	232.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.281;ClippingRankSum=0.000;DP=297;ExcessHet=3.0103;FS=2.712;MLEAC=1;MLEAF=0.500;MQ=56.85;MQRankSum=-9.449;QD=0.78;ReadPosRankSum=2.827;SOR=0.436;set=HC	GT:AD:AF:DP	0/1:271,26:0.09:297
chr19	55294927	.	A	G	2879.77	.	AC=2;AF=1.00;AN=2;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr19	55315307	rs112963206	C	G	856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.270;MLEAC=1;MLEAF=0.500;MQ=47.62;MQRankSum=-3.804;QD=13.60;ReadPosRankSum=0.205;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:20,43:0.68:63
chr19	55317456	rs149046820	G	A	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.47;MQRankSum=-0.344;QD=11.34;ReadPosRankSum=0.280;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr19	55329901	rs643347	A	G	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	0/1:197,80:0.29:277
chr19	55329922	rs1049150	A	T	2305.77	.	AC=1;AF=0.500;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	0/1:204,124:0.38:328
chr19	55331308	rs1065331	C	A	8222.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:168,362:0.68:530
chr19	55346409	rs4806584	T	A	1380.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:26,61:0.70:87
chr19	55350963	.	T	TCCCGGAGCTCCTATGACATGTA	2219.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.464;ClippingRankSum=0.000;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.93;MQRankSum=-12.234;QD=12.20;ReadPosRankSum=-8.003;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:145,37:0.20:182
chr19	55363400	rs145542216	G	T	116.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.571;ClippingRankSum=-0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.50;MQRankSum=-2.670;QD=9.73;ReadPosRankSum=-0.000;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chr19	55367451	rs199889703	T	C	169.88	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.03;MQRankSum=2.093;QD=15.44;ReadPosRankSum=-0.000;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:2,9:0.82:11
chr19	55396613	rs10402324	G	A	193.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,11:0.31:36
chr19	55396900	rs1865096	A	G	647.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:104,41:0.28:145
chr19	55417731	rs2278427	G	A	652.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:91,37:0.29:128
chr19	55417769	rs45609140	A	T	512.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:58,27:0.32:85
chr19	55420801	rs3765013	C	A	1889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.245;ClippingRankSum=0.000;DB;DP=488;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-2.432;QD=3.88;ReadPosRankSum=0.028;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:364,123:0.25:487
chr19	55420924	rs3765014	C	G	1000.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:144,58:0.29:202
chr19	55421293	.	CA	C	171.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.168;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=0.836;QD=3.73;ReadPosRankSum=0.125;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:23,23:0.50:46
chr19	55423488	rs73619967	T	C	478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.598;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=2.410;SOR=0.604;set=HC	GT:AD:AF:DP	0/1:209,48:0.19:257
chr19	55423530	rs73619969	C	T	1404.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.369;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=2.963;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.37;ReadPosRankSum=-2.199;SOR=0.925;set=HC	GT:AD:AF:DP	0/1:319,98:0.24:417
chr19	55438940	.	AAAAC	A	9681.73	.	AC=2;AF=1.00;AN=2;DP=224;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.24;QD=43.22;SOR=1.241;set=HC	GT:AD:AF:DP	1/1:0,224:1.00:224
chr19	55439166	rs269933	T	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr19	55439197	rs269934	A	C	1073.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	55441769	rs269949	G	A	703.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr19	55441902	rs269950	T	C	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr19	55441995	rs269951	A	G	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	55447572	rs775876	A	G	179.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr19	55447595	rs7359929	A	G	286.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr19	55447612	rs17699561	G	T	392.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	55447840	rs4806626	A	C	3092.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:1,118:0.99:119
chr19	55451050	rs10418277	C	T	2001.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	55451232	rs775882	C	T	9751.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr19	55451797	rs775883	C	T	9199.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,344:1.00:344
chr19	55451890	rs775884	T	C	5906.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr19	55452194	rs11290760	CA	C	1027.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=2.210;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.241;QD=8.94;ReadPosRankSum=-0.896;SOR=1.130;set=HC	GT:AD:AF:DP	0/1:42,73:0.63:115
chr19	55453134	rs775886	G	A	4732.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr19	55481796	.	A	T	134.77	.	AC=1;AF=0.500;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chr19	55488178	.	C	CTTTTTTTTTTTTTTTTTTT	1615.73	.	AC=2;AF=1.00;AN=2;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.43;QD=27.86;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr19	55488180	.	C	T	1626.77	.	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=232.40;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr19	55492892	rs56091361	C	G	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:18,75:0.81:93
chr19	55493728	rs17699678	C	T	1447.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:185,84:0.31:269
chr19	55493847	rs56073572	C	T	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:151,85:0.36:236
chr19	55494881	rs11672113	C	G	3917.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:71,168:0.70:239
chr19	55501348	rs202147826	CA	C	215.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.664;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=6.994;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.878;QD=6.96;ReadPosRankSum=0.528;SOR=2.428;set=HC	GT:AD:AF:DP	0/1:11,20:0.65:31
chr19	55501579	rs1654495	A	C	3348.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:59,151:0.72:210
chr19	55505557	rs1654504	C	T	525.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:11,23:0.68:34
chr19	55511960	rs34129339	TA	T	468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.423;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=9.312;MLEAC=1;MLEAF=0.500;MQ=60.78;MQRankSum=1.844;QD=7.44;ReadPosRankSum=-0.465;SOR=2.091;set=HC	GT:AD:AF:DP	0/1:21,42:0.67:63
chr19	55512137	rs12768	C	A	12023.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr19	55512232	rs1043673	C	A	5397.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:110,243:0.69:353
chr19	55512316	rs1043678	T	G	1982.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:46,87:0.65:133
chr19	55512347	rs1043680	G	C	974.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:27,46:0.63:73
chr19	55525388	rs10417981	G	T	3824.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr19	55525497	rs1671150	A	G	3497.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr19	55525596	rs1654412	T	C	2235.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr19	55525894	rs1671151	G	A	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	55526345	rs1671152	T	G	20317.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:0,474:1.00:474
chr19	55526359	rs1654413	A	T	20547.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr19	55526373	rs2304166	G	C	18153.77	.	AC=2;AF=1.00;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr19	55527081	rs2304167	C	T	5572.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	55527189	rs1671153	G	T	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr19	55527276	rs1654484	T	C	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	55529836	rs1654415	C	T	398.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr19	55529933	rs1671192	A	G	1935.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	55530035	rs1654416	C	T	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr19	55536595	rs1613662	G	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	55538980	rs1654425	T	C	3068.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr19	55539061	rs892089	A	G	7122.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr19	55539072	rs892090	T	G	6841.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.903;set=HC	GT:AD:AF:DP	1/1:0,270:1.00:270
chr19	55558922	rs3745913	C	T	2193.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:27,100:0.79:127
chr19	55570574	rs1654447	A	G	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr19	55574403	rs1654455	C	G	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.443;QD=23.97;ReadPosRankSum=-1.310;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	55574412	rs1654456	G	T	1533.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.024;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.978;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=-0.443;QD=23.97;ReadPosRankSum=-0.358;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:25,39:0.61:64
chr19	55574429	rs113253419	A	AGGCGTCC	699.73	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:15,32:0.68:47
chr19	55574431	.	G	GC	329.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=2.579;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=-1.149;QD=6.73;ReadPosRankSum=0.119;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr19	55574432	.	G	A	166	.	AC=1;AF=0.500;AN=2;BRF=0.32;FR=0.5000;HP=3;HapScore=4;MGOF=17;MMLQ=23;MQ=60.65;NF=4;NR=9;PP=166;QD=15.4439394267;SC=AGGCGTCAGGGGTCGGCGCGG;SbPval=0.82;Source=Platypus;TC=32;TCF=13;TCR=19;TR=13;WE=55574440;WS=55574419;set=Platypus	GT:AD:AF:DP	1/0:19,13:0.41:32
chr19	55574432	.	G	GTCCGGA	279.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=2.754;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=-1.067;QD=5.71;ReadPosRankSum=-0.631;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:34,15:0.31:49
chr19	55574468	rs1654458	G	A	750.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:26,34:0.57:60
chr19	55587648	rs372742476	TG	T	1828.73	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:103,49:0.32:152
chr19	55587658	rs62124197	G	A	1983.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=3.140;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-1.452;QD=11.27;ReadPosRankSum=-0.272;SOR=1.017;set=HC	GT:AD:AF:DP	0/1:120,56:0.32:176
chr19	55587668	rs61448344	C	T	2017.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=4.905;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=-1.437;QD=10.68;ReadPosRankSum=-0.421;SOR=1.100;set=HC	GT:AD:AF:DP	0/1:128,61:0.32:189
chr19	55587822	rs12609976	G	A	3811.77	.	AC=1;AF=0.500;AN=2;DB;DP=661;set=Intersection	GT:AD:AF:DP	0/1:437,219:0.33:656
chr19	55589544	rs10411094	G	A	3725.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:43,162:0.79:205
chr19	55589591	.	T	C	312	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=5;HapScore=2;MGOF=27;MMLQ=24;MQ=55.83;NF=8;NR=17;PP=312;QD=13.8708485019;SC=GGGCTGGGGGTCTGGACTCCT;SbPval=0.78;Source=Platypus;TC=75;TCF=29;TCR=46;TR=25;WE=55589599;WS=55589581;set=Platypus	GT:AD:AF:DP	1/0:50,25:0.33:75
chr19	55589619	rs12984354	T	G	702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.106;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=7.203;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=1.772;QD=27.03;ReadPosRankSum=1.129;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:7,19:0.73:26
chr19	55589619	.	TGCTGGGGGTCTGGACTCCTGGGTCAGAGGGAAGAGGG	GGCTGGGGGGCTGGACTCCTGGGTCAGAGGGAAGAGGG	2244	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=34;MMLQ=24;MQ=53.03;NF=8,0;NR=11,2;PP=2244,131;QD=120.919361835;SC=AGGGAAGAGGTGCTGGGGGTC;SbPval=0.28;Source=Platypus;TC=49;TCF=16;TCR=33;TR=19,2;WE=55589663;WS=55589609;set=Platypus	GT:AD:AF:DP	0/1:30,19:0.39:49
chr19	55589619	.	TGCTGGGGGTCTGGACTCCTGGGTCAGAGGGAAGAGGG	T	2244	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000,0.5000;HP=3;HapScore=2;MGOF=34;MMLQ=24;MQ=53.03;NF=8,0;NR=11,2;PP=2244,131;QD=120.919361835;SC=AGGGAAGAGGTGCTGGGGGTC;SbPval=0.28;Source=Platypus;TC=49;TCF=16;TCR=33;TR=19,2;WE=55589663;WS=55589609;set=Platypus	GT:AD:AF:DP	0/1:27,2:0.07:29
chr19	55589628	rs12984365	T	G	711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.186;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.076;MLEAC=1;MLEAF=0.500;MQ=58.74;MQRankSum=2.102;QD=32.35;ReadPosRankSum=-0.668;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:5,17:0.77:22
chr19	55591392	rs56378581	C	T	1655.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.299;ClippingRankSum=0.000;DB;DP=358;ExcessHet=3.0103;FS=3.268;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.65;ReadPosRankSum=-1.262;SOR=0.904;set=HC	GT:AD:AF:DP	0/1:256,100:0.28:356
chr19	55593417	rs17700138	C	T	3916.77	.	AC=1;AF=0.500;AN=2;DB;DP=709;set=Intersection	GT:AD:AF:DP	0/1:478,229:0.32:707
chr19	55594996	rs1628576	C	G	1944.77	.	AC=1;AF=0.500;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	0/1:261,121:0.32:382
chr19	55597369	rs2290476	G	C	6313.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:148,289:0.66:437
chr19	55598003	rs3217645	G	GC	1208.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr19	55598724	rs1054940	A	G	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.386;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=1.656;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.06;ReadPosRankSum=-0.982;SOR=1.255;set=HC	GT:AD:AF:DP	0/1:41,7:0.15:48
chr19	55603388	rs10410929	T	C	5367.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	55605658	rs370611782	GCCCCAGCCCCTCCTCCCTCAGACCCAGGAGTCCAGA	G	4952.73	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:77,159:0.67:236
chr19	55605704	rs3803899	A	C	2585.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.473;ClippingRankSum=0.000;DB;DP=267;ExcessHet=3.0103;FS=0.491;MLEAC=1;MLEAF=0.500;MQ=64.49;MQRankSum=-9.561;QD=9.72;ReadPosRankSum=0.759;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:187,79:0.30:266
chr19	55605705	rs3803900	C	T	2581.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.713;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.490;MLEAC=1;MLEAF=0.500;MQ=64.46;MQRankSum=-9.474;QD=9.63;ReadPosRankSum=0.752;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:189,79:0.29:268
chr19	55610066	rs55805974	CG	C	1465.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:101,65:0.39:166
chr19	55623806	rs604216	C	T	1681.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr19	55624223	rs56367991	G	A	1208.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:128,65:0.34:193
chr19	55644325	rs890868	A	C	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr19	55646893	rs75925120	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.93;ReadPosRankSum=-0.138;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:20,14:0.41:34
chr19	55652475	rs148264676	C	T	1969.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:238,114:0.32:352
chr19	55658088	rs11669534	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.972;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=2.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.582;SOR=0.911;set=HC	GT:AD:AF:DP	0/1:98,34:0.26:132
chr19	55660537	rs9636153	T	C	18082.77	.	AC=2;AF=1.00;AN=2;DB;DP=716;set=Intersection	GT:AD:AF:DP	1/1:4,711:0.99:715
chr19	55665584	rs7252610	A	C	3685.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.797;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr19	55667806	rs3729709	T	C	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	55668509	rs3729836	A	T	6088.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr19	55668722	rs113899745	C	CCTGT	7558.73	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr19	55668805	rs11671293	T	C	8865.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	55668819	rs11667847	A	G	9807.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	55668848	rs3729708	G	C	11110.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.13;QD=26.45;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,420:1.00:420
chr19	55669004	rs202159627	G	A	766.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:127,46:0.27:173
chr19	55670825	rs28377509	T	C	17297.77	.	AC=2;AF=1.00;AN=2;DB;DP=663;set=Intersection	GT:AD:AF:DP	1/1:0,660:1.00:660
chr19	55671090	rs67301370	TG	T	4992.73	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	55671134	.	GAGGAGGGGCTGGGGGCCTGGACCCCTGGGTCTAAGCA	G	3558.73	.	AC=2;AF=1.00;AN=2;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr19	55671337	rs890872	C	T	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.54;SOR=1.033;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	55671374	rs891187	C	T	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=1.725;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr19	55672470	rs2365725	T	C	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	55672569	rs7260371	G	A	7833.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chr19	55672784	rs7260320	A	G	853.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.44;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	55673245	rs3848617	G	A	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	55673746	rs7249414	C	A	1232.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr19	55677523	rs3848619	C	T	1798.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr19	55693081	rs8112238	G	C	2445.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	55693244	rs2288419	T	C	4868.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr19	55698737	.	GAAA	G	347.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.379;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=6.257;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=-2.272;SOR=2.196;set=HC	GT:AD:AF:DP	0/1:36,13:0.27:49
chr19	55698859	rs68070528	G	A	2503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.135;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=1.406;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:357,149:0.29:506
chr19	55699077	rs2288527	T	C	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=9.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.86;ReadPosRankSum=0.660;SOR=0.118;set=HC	GT:AD:AF:DP	0/1:51,32:0.39:83
chr19	55699087	rs2288526	C	T	1013.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.401;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=7.471;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=-0.292;SOR=0.158;set=HC	GT:AD:AF:DP	0/1:41,27:0.40:68
chr19	55699095	rs2288525	A	C	968.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.811;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.515;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.88;ReadPosRankSum=-0.823;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:36,25:0.41:61
chr19	55699454	rs890870	T	C	6276.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	55699575	rs3803905	T	C	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.403;ClippingRankSum=0.000;DB;DP=230;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=59.90;MQRankSum=0.579;QD=3.71;ReadPosRankSum=1.604;SOR=0.915;set=HC	GT:AD:AF:DP	0/1:173,56:0.24:229
chr19	55708475	rs2288522	G	T	1724.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:132,87:0.40:219
chr19	55708557	rs2288521	A	G	16604.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr19	55713411	rs144253410	G	A	2076.77	.	AC=1;AF=0.500;AN=2;DB;DP=416;MQ=59.87;set=Intersection	GT:AD:AF:DP	0/1:289,126:0.30:415
chr19	55713535	rs2288515	G	A	10682.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:8,406:0.98:414
chr19	55713614	rs10416122	A	G	4987.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:160,228:0.59:388
chr19	55715309	rs45535035	C	T	18581.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;ClippingRankSum=0.000;DB;DP=783;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.76;ReadPosRankSum=0.959;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:298,484:0.62:782
chr19	55715319	rs9304763	C	G	17959.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.240;ClippingRankSum=0.000;DB;DP=729;ExcessHet=3.0103;FS=0.535;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.67;ReadPosRankSum=0.943;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:277,451:0.62:728
chr19	55716800	rs2288516	A	G	9306.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr19	55720908	rs3745921	G	C	1462.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=2.388;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:218,94:0.30:312
chr19	55738425	rs3745919	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:5,8:0.62:13
chr19	55738634	rs4644955	T	C	5020.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr19	55739515	rs4255895	T	C	447.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chr19	55739689	rs10413828	G	A	3981.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:116,177:0.60:293
chr19	55741961	rs28678477	G	C	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:86,42:0.33:128
chr19	55751123	rs8104509	G	A	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	55756980	rs3745920	A	G	304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.880;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.17;ReadPosRankSum=-0.844;SOR=0.639;set=HC	GT:AD:AF:DP	0/1:73,23:0.24:96
chr19	55758628	rs7258327	C	T	5843.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr19	55776823	rs67351527	G	A	3588.77	.	AC=1;AF=0.500;AN=2;DB;DP=604;set=Intersection	GT:AD:AF:DP	0/1:392,209:0.35:601
chr19	55777143	rs62126349	T	C	1287.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:165,77:0.32:242
chr19	55777153	.	TC	T	5817.73	.	AC=1;AF=0.500;AN=2;DP=279;set=Intersection	GT:AD:AF:DP	0/1:89,189:0.68:278
chr19	55777741	.	CCA	C	101.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DP=76;ExcessHet=3.0103;FS=13.392;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-5.018;QD=1.37;ReadPosRankSum=-0.596;SOR=0.867;set=HC	GT:AD:AF:DP	0/1:66,8:0.11:74
chr19	55777744	.	TCACCAACATC	T	240.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.481;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=9.992;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=-5.092;QD=3.17;ReadPosRankSum=-0.759;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:68,8:0.11:76
chr19	55777754	.	C	CATCACAACCACT	900	.	AC=1;AF=0.500;AN=2;BRF=0.31;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=24;MQ=54.44;NF=0;NR=12;PP=900;QD=77.1666666667;SC=TCACCAACATCATCATCACCA;SbPval=1.0;Source=Platypus;TC=43;TCF=2;TCR=41;TR=12;WE=55777762;WS=55777731;set=Platypus	GT:AD:AF:DP	1/0:31,12:0.28:43
chr19	55785715	rs11427517	A	AC	126.73	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:13,8:0.38:21
chr19	55790886	rs10701478	A	AGCCGCCGCC	5982.73	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:44,143:0.76:187
chr19	55791091	rs62126354	C	T	3090.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	0/1:83,143:0.63:226
chr19	55795758	rs201695409	A	AC	799.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr19	55800789	rs62126358	C	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr19	55814881	rs1551562	A	G	770.77	.	AC=1;AF=0.500;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	0/1:98,38:0.28:136
chr19	55815894	rs1172820	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:75,30:0.29:105
chr19	55816678	rs1172821	C	T	1019.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:85,49:0.37:134
chr19	55824332	rs7246479	T	G	2412.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:186,131:0.41:317
chr19	55831576	rs897794	AA	CC	2530.77	.	AC=1;AF=0.500;AN=2;DB;DP=227;JOINED;set=Intersection	GT:AD:AF:DP	0/1:154,72:0.32:226
chr19	55831589	rs897796	A	G	1094.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,59:0.31:188
chr19	55831723	rs897797	T	G	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:75,40:0.35:115
chr19	55832427	rs10412726	T	G	2118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-0.014;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:380,136:0.26:516
chr19	55854313	rs2384685	G	A	719.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:92,40:0.30:132
chr19	55854389	rs12610863	G	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:15,22:0.59:37
chr19	55856083	rs11084395	T	C	1401.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:39,66:0.63:105
chr19	55856211	rs10405231	C	T	2546.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:70,113:0.62:183
chr19	55857777	rs45480394	G	T	1336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452;ClippingRankSum=0.000;DB;DP=290;ExcessHet=3.0103;FS=4.342;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.69;ReadPosRankSum=-2.140;SOR=0.524;set=HC	GT:AD:AF:DP	0/1:198,87:0.31:285
chr19	55865350	rs12461665	G	A	1069.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:16,46:0.74:62
chr19	55866468	rs12971931	G	C	806.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:19,38:0.67:57
chr19	55869419	rs11418715	C	CA	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.061;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.000;QD=5.96;ReadPosRankSum=-0.615;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:28,30:0.52:58
chr19	55869879	rs67168196	GGCTCCTTCATCTCGCCCCATGGCT	G	10456.73	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:4,392:0.99:396
chr19	55870104	rs12974819	G	C	10553.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr19	55870289	rs12974907	C	T	16489.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chr19	55870351	rs12976922	T	C	13032.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr19	55870600	rs12460416	C	G	9744.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr19	55871019	rs12609732	A	G	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr19	55872191	rs897799	G	A	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=1.083;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr19	55872397	rs2124918	A	G	8353.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr19	55872531	rs11084397	C	G	2479.77	.	AC=1;AF=0.500;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	0/1:69,109:0.61:178
chr19	55872566	rs2124919	A	G	4044.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	55872864	rs11673515	G	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr19	55872955	rs11673554	G	C	1678.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr19	55873642	rs4252574	C	T	3807.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr19	55879872	rs1126757	C	T	5452.77	.	AC=1;AF=0.500;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	0/1:88,255:0.74:343
chr19	55880385	rs62128183	G	T	219.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=1.059;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.19;ReadPosRankSum=2.301;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:51,18:0.26:69
chr19	55888518	.	T	TCCTGGGTCTGAGGGAGGAGGGCTGGGCCTGGACA	3362.73	.	AC=2;AF=1.00;AN=2;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.95;QD=50.19;SOR=1.318;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr19	55895588	rs1870074	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	55903158	rs10653185	C	CAG	2335.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	55913038	rs7608	C	T	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.681;MLEAC=1;MLEAF=0.500;MQ=57.37;MQRankSum=-0.807;QD=3.16;ReadPosRankSum=1.089;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:126,40:0.24:166
chr19	55913286	rs11393810	T	TC	1402.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	55914374	rs11672075	C	T	8862.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr19	55964546	rs3214450	G	GC	691.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	55993260	rs34864744	A	G	11719.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,422:1.00:422
chr19	55993790	rs7254184	A	G	3871.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr19	55993876	rs10423355	T	C	2617.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr19	55996939	rs3745450	G	A	1102.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	55998262	rs77664073	C	T	3633.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.72;SOR=0.982;set=HC	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	55999993	rs4405662	A	G	10990.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr19	56000239	.	A	ATGTGGGAGCACCAAAGCCGTGGTCCCCAGCCCTGACTTCAGGGGCCAGACATCTGCAGCCCCACCCGCCTCAGAGACCTGCGTCTCAGCCAGCCCCTCTGTCCAGAGTCCTTCCTCCCAGCAGTGGGGGTTTCTGGTTCAGAGGTGTGAGGACCGTG	229.87	.	AC=1;AF=0.500;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.95;QD=20.90;SOR=0.086;set=HC	GT:AD:AF:DP	0/1:11,0:0:11
chr19	56000246	.	T	TCCAGAGTCCTTCCTCCCAGCAGTGGGGGTTTCTGGTTCAGAG	290.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.033;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=2.831;MLEAC=1;MLEAF=0.500;MQ=57.63;MQRankSum=0.690;QD=13.84;ReadPosRankSum=0.667;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:18,3:0.14:21
chr19	56000250	.	T	TGAGGACC	292.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.669;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=21.463;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=1.159;QD=7.91;ReadPosRankSum=0.628;SOR=4.615;set=HC	GT:AD:AF:DP	0/1:23,14:0.38:37
chr19	56000429	.	GC	G	1527.73	.	AC=2;AF=1.00;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	1/1:5,63:0.93:68
chr19	56000468	rs62128259	C	T	127.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:37,14:0.27:51
chr19	56000896	rs62130160	G	T	2920.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr19	56001419	rs10716127	CG	C	1091.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	56001871	rs4274529	C	T	4057.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr19	56009465	rs11672130	G	A	1321.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:168,78:0.32:246
chr19	56011091	rs4801314	G	A	968.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:68,50:0.42:118
chr19	56011460	rs4801713	C	T	6461.77	.	AC=1;AF=0.500;AN=2;DB;DP=1197;set=Intersection	GT:AD:AF:DP	0/1:825,370:0.31:1195
chr19	56012590	rs11669496	G	A	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.165;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.86;ReadPosRankSum=0.355;SOR=1.068;set=HC	GT:AD:AF:DP	0/1:43,15:0.26:58
chr19	56012597	rs11669422	A	G	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=0.521;SOR=1.048;set=HC	GT:AD:AF:DP	0/1:41,14:0.25:55
chr19	56015448	rs7257434	C	T	1709.77	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:178,96:0.35:274
chr19	56024519	rs671542	T	C	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	56024563	rs514574	G	C	1490.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr19	56024599	rs671152	A	G	782.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	56029465	rs4801331	G	A	24769.77	.	AC=2;AF=1.00;AN=2;DB;DP=984;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=25.30;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,979:1.00:979
chr19	56030009	rs925878	C	T	14278.77	.	AC=1;AF=0.500;AN=2;DB;DP=1007;set=Intersection	GT:AD:AF:DP	0/1:303,678:0.69:981
chr19	56030428	rs10217	C	A	3541.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.331;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=5.191;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=23.15;ReadPosRankSum=-1.705;SOR=2.104;set=HC	GT:AD:AF:DP	1/1:4,149:0.97:153
chr19	56041255	rs620251	C	G	5236.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr19	56042734	rs117964325	T	C	809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=2.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-3.026;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:111,50:0.31:161
chr19	56047448	rs310453	A	G	9830.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr19	56052008	rs34837414	C	T	570.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.393;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.05;ReadPosRankSum=0.068;SOR=1.134;set=HC	GT:AD:AF:DP	0/1:53,28:0.35:81
chr19	56052282	rs73067164	C	T	23984.77	.	AC=1;AF=0.500;AN=2;DB;DP=1714;set=Intersection	GT:AD:AF:DP	0/1:585,1122:0.66:1707
chr19	56052337	rs55643341	A	AC	44380.73	.	AC=2;AF=1.00;AN=2;DB;DP=1387;set=Intersection	GT:AD:AF:DP	1/1:2,1327:1.00:1329
chr19	56052770	rs654439	C	T	9668.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr19	56055436	rs694398	A	G	5457.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	56056184	rs491639	A	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.87;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	56089353	rs2292812	C	T	2692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.30;ReadPosRankSum=1.328;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:48,128:0.73:176
chr19	56089908	rs113850871	C	CCCG	8181.73	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:91,199:0.69:290
chr19	56089947	rs10403008	C	G	5046.77	.	AC=1;AF=0.500;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	0/1:127,252:0.66:379
chr19	56090076	rs34164618	G	T	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:62,126:0.67:188
chr19	56104136	rs7247236	T	C	5219.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.06;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr19	56114045	rs1077806	C	T	5309.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:123,236:0.66:359
chr19	56114237	rs310459	G	A	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chr19	56153868	rs310475	G	A	12025.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:0,459:1.00:459
chr19	56160399	rs7246799	T	C	833.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr19	56162776	rs2287791	C	T	2457.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr19	56162881	rs519856	C	T	1171.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr19	56170771	rs537728	G	A	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr19	56171778	rs507498	A	C	2791.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	56175149	rs310444	G	A	4274.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr19	56180732	rs681804	T	C	3941.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr19	56180968	rs617073	C	T	2417.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	56185250	rs664684	G	A	9773.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr19	56203985	rs66906879	A	G	471.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:11,17:0.61:28
chr19	56220430	.	G	GT	166.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.98;ReadPosRankSum=1.251;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:62,22:0.26:84
chr19	56241265	rs193384	A	G	4889.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr19	56249445	rs755804	A	G	1709.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	56249672	rs56211941	A	G	3831.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:95,171:0.64:266
chr19	56273136	rs59333538	T	C	6578.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=52.32;QD=26.74;SOR=1.137;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	56274424	rs150161449	C	A	20156.77	.	AC=1;AF=0.500;AN=2;DB;DP=1708;set=Intersection	GT:AD:AF:DP	0/1:711,997:0.58:1708
chr19	56274453	rs75239380	G	A	11999.77	.	AC=1;AF=0.500;AN=2;DB;DP=1391;set=Intersection	GT:AD:AF:DP	0/1:787,602:0.43:1389
chr19	56283494	.	G	A	896.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189;ClippingRankSum=0.000;DP=412;ExcessHet=3.0103;FS=0.679;MLEAC=1;MLEAF=0.500;MQ=57.17;MQRankSum=-2.269;QD=2.18;ReadPosRankSum=-1.305;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:331,80:0.19:411
chr19	56284396	rs141642534	A	T	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.22;QD=30.99;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr19	56284428	rs150473927	C	A	9003.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.69;QD=26.33;SOR=1.172;set=HC	GT:AD:AF:DP	1/1:0,342:1.00:342
chr19	56284457	rs78244980	G	A	17194.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.22;QD=25.63;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,671:1.00:671
chr19	56284507	rs115250131	T	G	40614.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.39;QD=44.93;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,904:1.00:904
chr19	56284511	rs116745378	C	G	40614.77	.	AC=2;AF=1.00;AN=2;DB;DP=904;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.39;QD=44.93;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,904:1.00:904
chr19	56284529	rs199519773	C	A	38049.77	.	AC=2;AF=1.00;AN=2;DB;DP=817;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.27;QD=46.57;SOR=0.736;set=HC	GT:AD:AF:DP	1/1:0,817:1.00:817
chr19	56284535	rs144990325	A	G	34756.77	.	AC=2;AF=1.00;AN=2;DB;DP=750;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.10;QD=46.34;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,750:1.00:750
chr19	56284563	rs149452286	A	G	2483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=463;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.12;MQRankSum=-1.098;QD=5.39;ReadPosRankSum=-1.312;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:307,154:0.33:461
chr19	56284582	rs201888659	A	T	12247.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.88;QD=42.82;SOR=1.464;set=HC	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	56284587	rs200252021	C	G	11055.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.77;QD=48.07;SOR=1.620;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr19	56284614	rs199744839	C	T	1348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.381;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=1.215;MLEAC=1;MLEAF=0.500;MQ=45.60;MQRankSum=0.931;QD=16.45;ReadPosRankSum=-0.784;SOR=0.995;set=HC	GT:AD:AF:DP	0/1:28,54:0.66:82
chr19	56290178	rs8112672	C	T	2311.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=516;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.49;ReadPosRankSum=0.271;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:366,149:0.29:515
chr19	56300063	rs79080359	G	A	244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.696;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=5.223;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=-1.087;QD=4.80;ReadPosRankSum=-1.186;SOR=0.123;set=HC	GT:AD:AF:DP	0/1:37,14:0.27:51
chr19	56307583	rs2616940	A	G	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr19	56320663	rs12461110	G	A	1375.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:193,78:0.29:271
chr19	56321414	rs299163	C	A	14207.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;set=Intersection	GT:AD:AF:DP	1/1:0,521:1.00:521
chr19	56329186	.	G	GGAAAA	343.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.345;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.74;ReadPosRankSum=-0.039;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chr19	56329334	rs8113630	G	C	2583.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:52,116:0.69:168
chr19	56368863	rs11673189	G	A	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:12,17:0.59:29
chr19	56368948	rs435148	C	T	1132.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:36,49:0.58:85
chr19	56369189	rs441827	G	A	3506.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;ClippingRankSum=0.000;DB;DP=256;ExcessHet=3.0103;FS=2.854;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.75;ReadPosRankSum=-0.404;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:98,157:0.62:255
chr19	56369215	rs395503	C	T	3926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.173;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=4.034;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-0.834;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:114,173:0.60:287
chr19	56369314	rs16986718	G	A	2299.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:235,131:0.36:366
chr19	56369593	rs421810	T	C	4542.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:130,199:0.60:329
chr19	56390237	rs302453	A	T	1670.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.04;ReadPosRankSum=-1.290;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:305,109:0.26:414
chr19	56392875	rs302456	T	G	1815.77	.	AC=1;AF=0.500;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	0/1:218,105:0.33:323
chr19	56392920	rs12975929	C	T	3966.77	.	AC=1;AF=0.500;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	0/1:103,186:0.64:289
chr19	56393051	rs302457	T	C	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr19	56410340	rs302828	T	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	56413532	rs7258847	G	A	9593.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr19	56413583	rs302835	A	G	4725.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	56443864	rs145915426	T	TTTTTTG	603.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr19	56459342	rs306507	C	T	8854.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr19	56459614	rs306506	G	C	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr19	56464058	rs306501	C	G	2673.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr19	56473645	rs11671531	A	G	960.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr19	56477687	rs306497	A	G	891.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:139,55:0.28:194
chr19	56477710	rs306496	T	C	644.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.715;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.36;ReadPosRankSum=-0.281;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:105,43:0.29:148
chr19	56487430	rs306483	G	A	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.696;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=0.183;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:32,8:0.20:40
chr19	56487450	rs306482	T	G	223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.437;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=0.292;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:38,9:0.19:47
chr19	56487603	rs306481	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:134,61:0.31:195
chr19	56490778	rs306475	C	T	282.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:26,13:0.33:39
chr19	56499279	rs306457	G	C	1486.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371;ClippingRankSum=0.000;DB;DP=289;ExcessHet=3.0103;FS=0.457;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.14;ReadPosRankSum=0.795;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:196,93:0.32:289
chr19	56499345	rs306455	A	G	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:86,35:0.29:121
chr19	56511082	rs35427984	C	G	1070.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;ClippingRankSum=0.000;DB;DP=280;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.85;ReadPosRankSum=0.284;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:205,73:0.26:278
chr19	56511217	rs12462690	G	A	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.373;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.527;SOR=0.817;set=HC	GT:AD:AF:DP	0/1:77,22:0.22:99
chr19	56511233	rs12462663	C	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.653;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.87;ReadPosRankSum=0.975;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:54,17:0.24:71
chr19	56515334	rs1560691	C	T	3935.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:70,178:0.72:248
chr19	56520091	rs12460573	C	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr19	56520129	rs12460633	G	A	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.937;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	56520150	rs12460592	C	G	4622.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	56527179	rs149794790	T	TC	5777.73	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:103,179:0.63:282
chr19	56527313	rs12610241	C	T	1767.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chr19	56527345	rs12610242	C	T	1207.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:18,53:0.75:71
chr19	56530664	rs306428	A	G	12418.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr19	56531729	.	A	ATTC	878.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.794;ClippingRankSum=0.000;DP=181;ExcessHet=3.0103;FS=11.150;MLEAC=1;MLEAF=0.500;MQ=56.59;MQRankSum=-7.684;QD=5.14;ReadPosRankSum=-0.339;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:140,31:0.18:171
chr19	56538203	rs3103612	C	A	1734.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr19	56538976	rs471979	G	C	5740.77	.	AC=1;AF=0.500;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	0/1:129,246:0.66:375
chr19	56539240	rs397977	C	T	3565.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:83,160:0.66:243
chr19	56552230	rs2569425	A	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr19	56561749	rs2574762	A	G	1506.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr19	56564916	rs35553570	G	C	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr19	56565164	rs3103057	G	A	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr19	56569917	rs386875	G	A	65.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr19	56599366	rs373134866	GCC	G	117	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.25;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr19	56599405	rs4077285	C	G	745.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr19	56599437	rs5828672	CTCG	C	2106.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr19	56688669	rs4801681	A	G	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:115,66:0.36:181
chr19	56691912	rs274171	G	C	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr19	56693620	rs3745833	C	G	1261.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:202,80:0.28:282
chr19	56693643	rs274174	T	C	5640.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr19	56694505	rs575756	C	T	3347.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:74,155:0.68:229
chr19	56702323	rs4801296	C	T	5114.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:105,228:0.68:333
chr19	56717333	rs111438429	C	A	5776.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:133,267:0.67:400
chr19	56717353	rs10419548	A	G	5815.77	.	AC=1;AF=0.500;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	0/1:151,278:0.65:429
chr19	56718585	rs4801690	A	G	6095.77	.	AC=1;AF=0.500;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	0/1:149,287:0.66:436
chr19	56718698	rs9807807	A	G	1445.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:35,58:0.62:93
chr19	56719822	rs1865101	G	T	3245.77	.	AC=1;AF=0.500;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	0/1:122,151:0.55:273
chr19	56719853	rs1865102	C	A	2908.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:132,134:0.50:266
chr19	56720093	rs140150496	G	A	2609.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;ClippingRankSum=0.000;DB;DP=604;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.875;QD=4.33;ReadPosRankSum=-0.818;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:437,166:0.28:603
chr19	56758938	rs35779585	G	A	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,75:0.61:122
chr19	56888555	rs12185527	G	A	614.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484;ClippingRankSum=0.000;DB;DP=159;ExcessHet=3.0103;FS=3.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.89;ReadPosRankSum=0.961;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:117,41:0.26:158
chr19	56901293	rs6509995	C	T	848.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.168;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.84;ReadPosRankSum=-0.660;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:53,43:0.45:96
chr19	56901950	rs117001351	G	A	1146.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:129,65:0.34:194
chr19	56904509	rs11439847	T	TA	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=1.459;QD=2.17;ReadPosRankSum=-0.575;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:160,55:0.26:215
chr19	56918560	rs4801159	T	A	462.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:13,21:0.62:34
chr19	56918574	rs2288862	T	C	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:8,16:0.67:24
chr19	56918598	rs2288863	T	C	291.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:6,12:0.67:18
chr19	56935527	rs3810340	A	G	1613.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:213,98:0.32:311
chr19	56953585	rs3760849	T	C	2629.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:264,144:0.35:408
chr19	56953863	rs8107758	T	C	4298.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr19	56953963	rs35914474	G	A	6502.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:165,296:0.64:461
chr19	56961144	.	T	A	53	.	AC=2;AF=1.00;AN=2;BRF=0.0;FR=1.0000;HP=5;HapScore=2;MGOF=13;MMLQ=28;MQ=60.0;NF=1;NR=2;PP=53;QD=29.2570708491;SC=AGATAAATTTTAAAAAGACAT;SbPval=0.7;Source=Platypus;TC=3;TCF=1;TCR=2;TR=3;WE=56961152;WS=56961134;set=Platypus	GT:AD:AF:DP	1/1:0,3:1.00:3
chr19	56969332	rs3745826	A	G	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chr19	56973848	rs35027158	T	C	3236.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:59,135:0.70:194
chr19	57006415	rs17207481	A	G	5413.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:104,244:0.70:348
chr19	57023025	rs67525856	CTT	C	2516.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:225,92:0.29:317
chr19	57027606	rs10419939	C	T	843.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:58,41:0.41:99
chr19	57029837	rs10416032	T	G	1642.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:39,72:0.65:111
chr19	57036653	rs3752176	G	A	595.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:65,21:0.24:86
chr19	57036678	rs3752177	G	A	571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.366;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=5.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=0.252;SOR=1.337;set=HC	GT:AD:AF:DP	0/1:66,19:0.22:85
chr19	57050430	rs189847863	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=1.096;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.66;ReadPosRankSum=1.908;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:33,20:0.38:53
chr19	57050515	rs7258088	C	G	4605.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.17;SOR=1.001;set=HC	GT:AD:AF:DP	1/1:0,176:1.00:176
chr19	57051047	.	G	A	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.717;ClippingRankSum=0.000;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.90;ReadPosRankSum=-0.485;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:68,52:0.43:120
chr19	57060317	rs2074940	C	T	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr19	57060573	rs2074941	C	T	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr19	57062073	rs379214	T	C	1892.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr19	57065189	rs145011	T	C	1623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583;ClippingRankSum=0.000;DB;DP=373;ExcessHet=3.0103;FS=3.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.136;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:265,106:0.29:371
chr19	57088850	rs3752180	T	C	5648.77	.	AC=1;AF=0.500;AN=2;DB;DP=391;set=Intersection	GT:AD:AF:DP	0/1:135,253:0.65:388
chr19	57089050	rs4801177	C	T	4346.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:94,194:0.67:288
chr19	57175484	rs7250003	A	G	5389.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:319,267:0.46:586
chr19	57175578	rs12610410	C	T	7019.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:207,321:0.61:528
chr19	57176198	rs8108756	T	G	3727.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021;ClippingRankSum=0.000;DB;DP=810;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=-0.378;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:571,237:0.29:808
chr19	57176304	rs12460400	T	G	2453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=0.575;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=-2.288;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:356,148:0.29:504
chr19	57176482	rs12462469	C	T	2763.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:394,163:0.29:557
chr19	57176820	rs12462993	C	A	278.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.53;ReadPosRankSum=0.032;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:60,19:0.24:79
chr19	57176838	rs12462995	C	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.097;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.00;ReadPosRankSum=-0.924;SOR=0.288;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chr19	57184136	rs10409943	C	G	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:25,41:0.62:66
chr19	57184265	rs200338534	T	G	3383.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:125,161:0.56:286
chr19	57184361	rs201168421	C	CT	734.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=4.434;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-1.591;QD=11.66;ReadPosRankSum=1.112;SOR=0.252;set=HC	GT:AD:AF:DP	0/1:17,46:0.73:63
chr19	57344615	rs76508427	C	G	376.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:52,22:0.30:74
chr19	57641146	rs1027392	A	G	6124.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr19	57641799	rs3795003	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:118,74:0.39:192
chr19	57642098	rs3764574	G	A	3269.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:83,146:0.64:229
chr19	57642782	rs9973206	C	A	1492.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	57646218	rs17305549	C	T	800.77	.	AC=1;AF=0.500;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	0/1:110,47:0.30:157
chr19	57646249	rs59231549	C	T	867.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:152,55:0.27:207
chr19	57646570	rs4801433	T	C	2722.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:60,122:0.67:182
chr19	57647015	rs7251328	A	G	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr19	57647236	rs7252632	T	C	8361.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr19	57648277	rs4801200	A	T	4159.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.197;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.31;ReadPosRankSum=0.028;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:68,187:0.73:255
chr19	57648433	rs2370135	T	C	2657.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr19	57649901	rs17305556	G	A	1459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.006;ClippingRankSum=0.000;DB;DP=243;ExcessHet=3.0103;FS=1.047;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.01;ReadPosRankSum=-1.120;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:161,82:0.34:243
chr19	57649940	rs17305563	A	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:184,87:0.32:271
chr19	57653864	rs11084488	T	C	965.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:23,43:0.65:66
chr19	57654065	rs58537382	T	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:52,112:0.68:164
chr19	57654104	rs59976893	T	C	2080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.316;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=2.852;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=2.185;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:62,98:0.61:160
chr19	57654216	rs77434521	T	G	510.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=2.337;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.81;ReadPosRankSum=-0.196;SOR=1.158;set=HC	GT:AD:AF:DP	0/1:32,26:0.45:58
chr19	57654217	rs10426157	T	G	710.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.206;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=3.913;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.47;ReadPosRankSum=0.142;SOR=0.309;set=HC	GT:AD:AF:DP	0/1:25,32:0.56:57
chr19	57665750	rs8108591	T	C	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:31,106:0.77:137
chr19	57665888	rs10420848	A	G	366.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.040;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=2.837;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-0.401;SOR=1.015;set=HC	GT:AD:AF:DP	0/1:97,28:0.22:125
chr19	57665927	rs74258096	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.616;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=0.345;SOR=1.136;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr19	57665950	rs147982862	T	G	279.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.042;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.445;MLEAC=1;MLEAF=0.500;MQ=59.59;MQRankSum=-1.827;QD=6.82;ReadPosRankSum=-0.457;SOR=0.439;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr19	57665963	rs142792522	A	G	178.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=4.263;MLEAC=1;MLEAF=0.500;MQ=58.58;MQRankSum=-2.293;QD=5.42;ReadPosRankSum=1.240;SOR=1.187;set=HC	GT:AD:AF:DP	0/1:27,6:0.18:33
chr19	57665966	rs145678714	T	C	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.091;MLEAC=1;MLEAF=0.500;MQ=58.38;MQRankSum=-2.088;QD=5.03;ReadPosRankSum=0.756;SOR=1.222;set=HC	GT:AD:AF:DP	0/1:23,6:0.21:29
chr19	57666840	rs12459119	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr19	57670805	rs12609860	A	G	833.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:79,42:0.35:121
chr19	57703209	rs2302059	T	C	725.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:14,30:0.68:44
chr19	57703369	rs7250511	T	C	2836.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:87,130:0.60:217
chr19	57723007	rs2074858	G	C	6135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.15;ReadPosRankSum=0.097;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:71,155:0.69:226
chr19	57723013	rs917340	G	A	6120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.085;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.523;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.57;ReadPosRankSum=0.436;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:71,151:0.68:222
chr19	57742472	rs11084490	G	C	6445.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr19	57742489	rs58264281	C	T	12878.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr19	57742493	rs142269286	AGGACGAGCAGGATT	A	13013.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr19	57742514	rs150998448	G	GC	5699.73	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:111,203:0.65:314
chr19	57742703	rs758097	A	G	551.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:62,30:0.33:92
chr19	57743039	rs758098	T	C	5544.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.18;SOR=1.162;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chr19	57743067	rs2361127	C	G	2113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;ClippingRankSum=0.000;DB;DP=397;ExcessHet=3.0103;FS=3.444;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.35;ReadPosRankSum=1.932;SOR=0.870;set=HC	GT:AD:AF:DP	0/1:265,130:0.33:395
chr19	57743334	rs758099	C	T	341.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chr19	57743766	rs2074859	C	T	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:19,7:0.27:26
chr19	57752326	rs8111661	C	G	1957.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,80:0.66:121
chr19	57755508	rs8109659	C	T	6525.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;ClippingRankSum=0.000;DB;DP=404;ExcessHet=3.0103;FS=0.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=0.186;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:114,288:0.72:402
chr19	57760018	rs2014572	G	A	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr19	57760057	rs3746231	G	A	2965.77	.	AC=1;AF=0.500;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	0/1:80,138:0.63:218
chr19	57760216	rs1019071	G	A	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr19	57764770	rs10421632	G	A	2314.77	.	AC=1;AF=0.500;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	0/1:53,100:0.65:153
chr19	57765432	rs8100154	A	G	6954.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:143,309:0.68:452
chr19	57796192	rs117683431	T	C	821.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.104;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.10;ReadPosRankSum=1.099;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:35,39:0.53:74
chr19	57802024	rs45619736	G	A	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.135;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.74;ReadPosRankSum=0.305;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chr19	57802806	rs2041109	C	T	2421.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:186,76:0.29:262
chr19	57802824	rs2041110	G	A	2170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;ClippingRankSum=0.000;DB;DP=262;ExcessHet=3.0103;FS=2.438;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=2.111;SOR=0.889;set=HC	GT:AD:AF:DP	0/1:192,67:0.26:259
chr19	57832089	rs4801461	G	T	821.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr19	57832257	rs4801462	T	C	623.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=0.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.52;ReadPosRankSum=0.026;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:97,41:0.30:138
chr19	57832292	rs66494727	C	T	1562.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:37,74:0.67:111
chr19	57835252	rs4801216	C	T	737.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:77,38:0.33:115
chr19	57835279	rs4801467	G	A	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:41,24:0.37:65
chr19	57837926	rs8110400	C	A	3127.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr19	57838018	rs6510057	C	G	5256.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr19	57839150	rs8100491	A	G	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr19	57839567	rs1968090	T	A	10523.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr19	57840072	rs147736998	A	G	6693.77	.	AC=1;AF=0.500;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	0/1:122,287:0.70:409
chr19	57840505	rs73633729	G	A	4507.77	.	AC=1;AF=0.500;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	0/1:111,199:0.64:310
chr19	57863149	rs34172522	T	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:69,27:0.28:96
chr19	57865082	rs862703	T	C	9411.77	.	AC=2;AF=1.00;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr19	57868336	rs862709	A	G	11909.77	.	AC=2;AF=1.00;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	1/1:0,447:1.00:447
chr19	57890000	rs2361119	C	T	8782.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr19	57890024	rs73634646	T	C	3518.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:65,156:0.71:221
chr19	57901422	rs75599624	G	T	1592.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;ClippingRankSum=0.000;DB;DP=338;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=-0.599;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:239,99:0.29:338
chr19	57909872	rs4801478	G	A	7453.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr19	57922664	rs4801480	T	C	2500.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr19	57929213	.	C	CA	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.253;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=1.088;QD=8.21;ReadPosRankSum=1.596;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:11,21:0.66:32
chr19	57931303	rs2014827	C	A	1150.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:155,65:0.30:220
chr19	57932027	rs2158009	C	T	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:228,103:0.31:331
chr19	57946924	rs56241253	G	C	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:40,109:0.73:149
chr19	57954628	rs7249430	G	A	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	0/1:161,75:0.32:236
chr19	57955244	rs12986235	A	G	2303.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:59,110:0.65:169
chr19	57956828	rs7246856	T	G	1210.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:115,62:0.35:177
chr19	57983457	rs10153521	A	G	2156.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:62,93:0.60:155
chr19	57985460	rs2074059	T	A	3627.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=1.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.75;ReadPosRankSum=-0.244;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:73,173:0.70:246
chr19	57985566	rs2074060	G	C	2994.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:46,130:0.74:176
chr19	57985889	rs7257644	T	C	2434.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:37,105:0.74:142
chr19	57986184	rs2285607	G	A	3902.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:56,169:0.75:225
chr19	57987895	rs2074065	C	T	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.244;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=7.391;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.92;ReadPosRankSum=-1.114;SOR=1.915;set=HC	GT:AD:AF:DP	0/1:17,39:0.70:56
chr19	58002819	rs6510085	T	A	3185.77	.	AC=1;AF=0.500;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	0/1:66,149:0.69:215
chr19	58002964	rs8108040	G	C	3425.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:96,155:0.62:251
chr19	58003141	rs71333245	A	G	730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.496;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=41.730;MLEAC=1;MLEAF=0.500;MQ=55.93;MQRankSum=-8.365;QD=4.48;ReadPosRankSum=-0.490;SOR=3.371;set=HC	GT:AD:AF:DP	0/1:124,39:0.24:163
chr19	58003580	rs2074071	A	G	5598.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:145,259:0.64:404
chr19	58003613	rs2074072	C	T	5297.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:127,241:0.65:368
chr19	58003728	rs2074073	G	A	5262.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:108,238:0.69:346
chr19	58003873	rs2074074	C	T	2377.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:56,106:0.65:162
chr19	58004158	rs2074075	C	T	1743.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:38,79:0.68:117
chr19	58004346	rs2074076	G	C	1639.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:29,69:0.70:98
chr19	58004931	rs2074077	A	G	6542.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:196,282:0.59:478
chr19	58011274	rs146373125	C	G	1610.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:47,75:0.61:122
chr19	58016474	rs150811873	T	C	1899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.870;ClippingRankSum=0.000;DB;DP=314;ExcessHet=3.0103;FS=20.196;MLEAC=1;MLEAF=0.500;MQ=46.17;MQRankSum=1.416;QD=6.05;ReadPosRankSum=-0.066;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:203,111:0.35:314
chr19	58038964	rs12461014	T	A	6912.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr19	58058536	rs1548476	A	G	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:217,98:0.31:315
chr19	58058739	rs10410631	T	C	5039.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr19	58071195	rs75946741	C	T	730.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:16,32:0.67:48
chr19	58083467	rs73060436	C	T	456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.91;ReadPosRankSum=1.208;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:65,28:0.30:93
chr19	58084930	rs3746222	G	A	3701.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:105,161:0.61:266
chr19	58089521	rs886265	G	C	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:50,17:0.25:67
chr19	58117223	rs2360543	T	A	5103.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	58118715	rs10715037	CT	C	1836.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=3.930;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.225;QD=9.47;ReadPosRankSum=1.112;SOR=1.177;set=HC	GT:AD:AF:DP	0/1:45,149:0.77:194
chr19	58151338	rs34418076	TG	T	1655.73	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:115,65:0.36:180
chr19	58189287	rs9676604	C	T	1728.77	.	AC=1;AF=0.500;AN=2;DB;DP=346;set=Intersection	GT:AD:AF:DP	0/1:243,102:0.30:345
chr19	58199291	rs12611105	C	T	2316.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.577;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=1.931;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.29;ReadPosRankSum=0.330;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:310,128:0.29:438
chr19	58213952	rs2074078	C	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:231,116:0.33:347
chr19	58231807	rs2239986	A	G	870.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=-1.179;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:245,71:0.22:316
chr19	58258466	rs60751243	G	T	2649.77	.	AC=1;AF=0.500;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	0/1:391,163:0.29:554
chr19	58258589	rs2074081	G	A	922.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.271;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.65;ReadPosRankSum=-1.307;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:189,64:0.25:253
chr19	58262454	rs11419013	C	CT	321.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,14:0.26:54
chr19	58281192	rs74911211	T	TC	3456.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;ClippingRankSum=0.000;DB;DP=561;ExcessHet=3.0103;FS=1.204;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.786;QD=6.67;ReadPosRankSum=0.547;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:341,177:0.34:518
chr19	58281374	rs2285614	G	A	420.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:62,24:0.28:86
chr19	58288169	rs2285615	C	T	1108.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:128,58:0.31:186
chr19	58291228	rs2158013	A	G	1090.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:155,65:0.30:220
chr19	58301766	rs72530696	TG	T	4603.73	.	AC=1;AF=0.500;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	0/1:415,182:0.30:597
chr19	58320443	.	C	T	661.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.860;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=42.42;MQRankSum=0.341;QD=20.05;ReadPosRankSum=-1.197;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:9,24:0.73:33
chr19	58326001	rs2303817	A	G	4483.77	.	AC=1;AF=0.500;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	0/1:552,257:0.32:809
chr19	58352522	rs12981244	G	A	4066.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.92;MQRankSum=1.250;QD=4.28;ReadPosRankSum=-0.435;SOR=0.678;set=HC	GT:AD:AF:DP	0/1:684,267:0.28:951
chr19	58361328	rs28374851	G	C	1375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.701;QD=6.84;ReadPosRankSum=-1.282;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:155,46:0.23:201
chr19	58361334	rs28577146	G	A	1433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.072;ClippingRankSum=0.000;DB;DP=201;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=59.34;MQRankSum=-0.751;QD=7.13;ReadPosRankSum=-0.814;SOR=0.756;set=HC	GT:AD:AF:DP	0/1:156,45:0.22:201
chr19	58361549	rs58754895	A	G	572.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,29:0.39:74
chr19	58370727	rs77825740	T	G	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770;ClippingRankSum=0.000;DB;DP=589;ExcessHet=3.0103;FS=10.725;MLEAC=1;MLEAF=0.500;MQ=57.75;MQRankSum=-20.990;QD=1.20;ReadPosRankSum=0.219;SOR=1.610;set=HC	GT:AD:AF:DP	0/1:491,96:0.16:587
chr19	58374130	rs7253130	C	T	639.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:102,37:0.27:139
chr19	58385954	.	T	C	478	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=7;HapScore=1;MGOF=10;MMLQ=27;MQ=59.07;NF=27;NR=12;PP=478;QD=13.1479798089;SC=CACATTCATGTTTTTTTTCAG;SbPval=0.58;Source=Platypus;TC=140;TCF=96;TCR=44;TR=39;WE=58385962;WS=58385944;set=Platypus	GT:AD:AF:DP	1/0:101,39:0.28:140
chr19	58386651	rs12610589	C	A	658.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.692;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.710;MLEAC=1;MLEAF=0.500;MQ=54.97;MQRankSum=2.466;QD=5.11;ReadPosRankSum=-1.543;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:88,41:0.32:129
chr19	58386762	rs7252219	A	G	754.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.427;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.604;QD=5.28;ReadPosRankSum=0.555;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:97,46:0.32:143
chr19	58419031	rs117379656	C	T	2084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=0.516;QD=13.36;ReadPosRankSum=-0.213;SOR=0.914;set=HC	GT:AD:AF:DP	0/1:58,98:0.63:156
chr19	58419180	rs73068597	G	A	640.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr19	58419841	rs10414704	G	T	3590.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:102,162:0.61:264
chr19	58419874	rs10415951	T	C	4406.77	.	AC=1;AF=0.500;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	0/1:152,207:0.58:359
chr19	58420152	rs17845779	C	A	12360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=484;ExcessHet=3.0103;FS=1.807;MLEAC=1;MLEAF=0.500;MQ=56.20;MQRankSum=-4.018;QD=25.54;ReadPosRankSum=-1.585;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:175,309:0.64:484
chr19	58420162	rs10416584	T	C	13446.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.267;ClippingRankSum=0.000;DB;DP=507;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=56.98;MQRankSum=-3.806;QD=26.57;ReadPosRankSum=-0.487;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:177,329:0.65:506
chr19	58420167	rs17852300	T	C	13688.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=536;ExcessHet=3.0103;FS=0.543;MLEAC=1;MLEAF=0.500;MQ=57.25;MQRankSum=-3.586;QD=25.59;ReadPosRankSum=0.618;SOR=0.747;set=HC	GT:AD:AF:DP	0/1:186,349:0.65:535
chr19	58420699	rs3745133	C	A	9135.77	.	AC=1;AF=0.500;AN=2;DB;DP=722;set=Intersection	GT:AD:AF:DP	0/1:313,409:0.57:722
chr19	58421128	rs201944488	C	T	6298.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.50;QD=26.14;SOR=1.091;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr19	58439306	rs7253514	G	A	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:121,52:0.30:173
chr19	58446618	rs62126278	G	A	3323.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:87,148:0.63:235
chr19	58453342	rs959231	T	C	5803.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:123,244:0.66:367
chr19	58455381	rs257652	C	T	12765.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.38;SOR=0.806;set=HC	GT:AD:AF:DP	1/1:0,503:1.00:503
chr19	58473023	rs149034775	G	C	175.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr19	58485439	rs257676	C	T	3799.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr19	58549354	rs113374422	C	T	6898.77	.	AC=1;AF=0.500;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	0/1:147,313:0.68:460
chr19	58549366	rs159870	C	G	16652.77	.	AC=2;AF=1.00;AN=2;DB;DP=424;set=Intersection	GT:AD:AF:DP	1/1:0,423:1.00:423
chr19	58549593	rs2241406	C	G	8736.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr19	58565431	rs8104122	C	T	4249.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr19	58572959	rs2288274	G	A	5764.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	58572979	rs1469087	G	A	6781.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr19	58579927	rs12461217	A	C	2130.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr19	58598670	rs2287837	C	T	1477.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.17;ReadPosRankSum=-0.042;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:195,91:0.32:286
chr19	58598784	rs2260914	A	G	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr19	58600048	rs1529329	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:131,55:0.30:186
chr19	58601221	rs2547354	T	C	7068.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:174,326:0.65:500
chr19	58629830	rs8108978	A	T	2723.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr19	58629878	rs8109275	G	T	1609.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr19	58718360	rs59557917	A	AG	4339.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr19	58774071	rs260462	A	G	4419.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.777;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chr19	58774223	rs34204906	GC	G	1299.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr19	58790675	rs437229	T	C	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr19	58790713	rs374431	G	C	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr19	58790784	rs260502	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:11,22:0.67:33
chr19	58791213	rs260500	C	A	1703.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.874;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.43;ReadPosRankSum=-0.855;SOR=0.812;set=HC	GT:AD:AF:DP	1/1:1,66:0.99:67
chr19	58791253	rs141708687	TA	T	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=4.706;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.70;ReadPosRankSum=-0.249;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:9,12:0.57:21
chr19	58797344	rs400733	A	C	958.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr19	58797583	rs59553565	C	CT	4651.73	.	AC=1;AF=0.500;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	0/1:49,145:0.75:194
chr19	58806083	rs260471	T	C	4485.77	.	AC=1;AF=0.500;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	0/1:113,203:0.64:316
chr19	58806686	rs17853924	A	G	1953.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.594;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.25;ReadPosRankSum=-0.601;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:337,123:0.27:460
chr19	58849660	rs150229839	G	A	934.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:17,39:0.70:56
chr19	58858231	rs3214663	GC	G	5477.73	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr19	58858614	rs11345647	AG	A	3609.73	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr19	58858656	.	T	C	2839.77	.	AC=1;AF=0.500;AN=2;DP=177;set=Intersection	GT:AD:AF:DP	0/1:51,126:0.71:177
chr19	58858676	rs1265957	A	G	5439.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr19	58859052	.	A	G	524.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=1.194;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.83;ReadPosRankSum=2.936;SOR=1.047;set=HC	GT:AD:AF:DP	0/1:50,17:0.25:67
chr19	58859054	rs113490434	GC	G	517.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.433;ClippingRankSum=0.000;DB;DP=74;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=8.09;ReadPosRankSum=1.895;SOR=0.936;set=HC	GT:AD:AF:DP	0/1:47,17:0.27:64
chr19	58859055	rs144085420	C	CCCCAGGCCGCG	659.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:20,20:0.50:40
chr19	58859066	rs1265959	A	G	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr19	58863161	rs10164322	C	CT	466.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.110;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.943;QD=8.98;ReadPosRankSum=2.591;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:15,37:0.71:52
chr19	58864479	rs893184	T	C	10421.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:3,396:0.99:399
chr19	58864867	rs2375470	A	G	6741.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr19	58864879	rs3833872	T	TG	6213.73	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr19	58868480	rs12609654	G	T	11240.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:227,492:0.68:719
chr19	58869515	rs6146577	GTCCCC	G	9125.73	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:122,228:0.65:350
chr19	58870003	rs10692126	T	TGAG	1178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.14;ReadPosRankSum=1.664;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:129,36:0.22:165
chr19	58870087	rs11332731	TG	T	4614.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;ClippingRankSum=0.000;DB;DP=724;ExcessHet=3.0103;FS=0.606;MLEAC=1;MLEAF=0.500;MQ=60.01;MQRankSum=1.646;QD=6.40;ReadPosRankSum=0.924;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:526,195:0.27:721
chr19	58871130	rs6510138	C	G	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:43,19:0.31:62
chr19	58879965	rs7255489	A	G	6289.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr19	58879976	rs7255596	C	T	5539.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chr19	58898193	rs975947	C	T	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=1.024;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=-0.213;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:53,18:0.25:71
chr19	58898436	rs731835	T	C	213.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chr19	58904715	rs2289143	C	T	355.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.787;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=3.997;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=-1.357;SOR=1.219;set=HC	GT:AD:AF:DP	0/1:87,22:0.20:109
chr19	58907443	rs12611212	C	G	705.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:8,32:0.80:40
chr19	58908150	rs13343526	C	G	11260.77	.	AC=2;AF=1.00;AN=2;DB;DP=442;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr19	58920104	rs145105239	ACGGGAGTTC	A	3059.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr19	58928302	rs10423138	T	C	5820.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr19	58928786	rs7257872	A	G	7971.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr19	58929052	rs3764535	G	A	5890.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr19	58929136	rs3764534	G	A	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr19	58929194	rs3764533	A	G	1359.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr19	58945962	rs9941466	C	T	6420.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr19	58946056	rs1465789	G	A	5876.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr19	58951123	rs7259841	T	C	7155.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr19	58962958	rs893188	C	T	6765.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr19	58963018	rs893187	C	G	4073.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr19	58963047	rs116959667	G	T	509.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:67,31:0.32:98
chr19	58966644	rs60037165	A	T	1162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.199;ClippingRankSum=0.000;DB;DP=247;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=59.83;MQRankSum=-4.722;QD=4.75;ReadPosRankSum=-0.558;SOR=0.572;set=HC	GT:AD:AF:DP	0/1:179,66:0.27:245
chr19	58982384	rs10418774	A	G	10530.77	.	AC=2;AF=1.00;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	1/1:0,393:1.00:393
chr19	58983549	rs11673703	G	A	3275.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:75,144:0.66:219
chr19	58989495	rs893185	A	C	14889.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr19	58991900	rs882610	G	A	9827.77	.	AC=2;AF=1.00;AN=2;DB;DP=357;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chr19	59010593	rs4801274	A	G	14554.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr19	59025685	rs4801602	A	C	2992.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr19	59082605	rs3752109	C	T	11461.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr20	76962	rs6111385	T	C	20851.77	.	AC=2;AF=1.00;AN=2;DB;DP=802;set=Intersection	GT:AD:AF:DP	1/1:0,799:1.00:799
chr20	126310	rs11467417	ACC	A	30602.73	.	AC=2;AF=1.00;AN=2;DB;DP=751;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr20	138004	rs6055356	G	C	272.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr20	138125	rs2298108	G	T	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	138148	rs2298109	C	T	2620.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	139409	rs12624951	G	A	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	139456	rs12624954	G	A	7511.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	139576	rs16995685	C	A	11235.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,424:1.00:424
chr20	139745	rs4142304	T	C	1363.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	207889	rs2298149	G	A	4669.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	208168	rs6110460	T	C	1062.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	210061	rs13045643	G	A	6453.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr20	256573	rs6075567	A	G	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr20	256727	rs3827147	T	A	2633.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	257320	rs2277779	G	A	3039.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	257733	rs2277781	A	G	9468.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr20	257803	rs6075583	G	C	9583.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.67;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	257812	rs6046375	T	C	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.69;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr20	258865	rs6046492	A	G	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	259156	rs6035505	G	A	1194.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	259818	rs6035541	G	A	9526.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:1,351:1.00:352
chr20	259969	rs7271033	G	C	10236.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr20	264498	rs6137055	A	C	1338.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	270414	rs11478105	TC	T	4376.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	270428	rs6035784	C	T	2738.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	271225	rs3835237	T	TTTTA	5530.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.96;QD=31.60;SOR=1.280;set=HC	GT:AD:AF:DP	1/1:4,171:0.98:175
chr20	278687	rs5839847	CCGG	C	5786.73	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	278806	rs1057189	C	T	13473.77	.	AC=2;AF=1.00;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	1/1:0,492:1.00:492
chr20	279483	rs1046560	T	C	12696.77	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr20	334317	rs5839855	TC	T	29524.73	.	AC=2;AF=1.00;AN=2;DB;DP=985;set=Intersection	GT:AD:AF:DP	1/1:0,946:1.00:946
chr20	368905	rs2295490	A	G	6188.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	371972	rs6051637	T	C	7449.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	377226	rs6115830	C	T	12935.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;set=Intersection	GT:AD:AF:DP	1/1:0,470:1.00:470
chr20	389456	rs3746792	C	T	5520.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	391170	rs7059	C	T	5570.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr20	397928	rs6115906	C	T	3594.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	398039	rs67707964	TTG	T	40.73	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,6:0.18:34
chr20	400504	rs67470622	AGTGACCCTGCACCTGGCT	A	2077.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:1,50:0.98:51
chr20	402710	rs2057251	A	G	6364.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr20	402921	rs6051905	C	G	8435.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr20	409870	.	A	AT	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.03;ReadPosRankSum=0.257;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:17,12:0.41:29
chr20	425606	rs2273465	C	A	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	428767	rs6139203	A	C	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	459409	.	C	CA	169.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;ClippingRankSum=0.000;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=0.228;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:11,17:0.61:28
chr20	480602	rs199709718	CA	C	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.812;QD=1.88;ReadPosRankSum=1.632;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:25,12:0.32:37
chr20	590456	rs282164	A	G	6667.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	590542	rs2754502	CG	GC	11987.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,269:1.00:269
chr20	590900	rs183989	T	C	1933.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.78;SOR=0.774;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	741847	rs910857	A	G	4215.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr20	742237	rs3746801	G	A	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.96;SOR=4.073;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	742237	.	GGT	AGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.12;FR=1.0000;HP=2;HapScore=1;MGOF=12;MMLQ=23;MQ=60.0;NF=71;NR=7;PP=2947;QD=20;SC=TTCCCGGGAGGGTCCCACAGA;SbPval=0.72;Source=Platypus;TC=82;TCF=73;TCR=9;TR=78;WE=742247;WS=742235;set=Platypus	GT:AD:AF:DP	1/1:4,78:0.95:82
chr20	742239	rs6054589	T	C	3860.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.87;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	744050	rs8122335	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:2,92:0.98:94
chr20	744450	rs3746805	G	A	6847.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr20	744662	rs3833341	A	ACAGGTCAAT	2222.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	825678	rs538094	T	C	19946.77	.	AC=2;AF=1.00;AN=2;DB;DP=727;set=Intersection	GT:AD:AF:DP	1/1:0,724:1.00:724
chr20	826492	rs2282050	G	C	1422.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	1115529	rs4813939	A	G	8917.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr20	1115919	rs2235587	A	G	4544.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	1212186	rs77353889	A	G	2469.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	1277157	rs6109320	G	C	5525.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	1286711	rs4813082	T	C	3431.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	1292964	rs4814110	T	C	10099.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chr20	1293046	rs1048621	G	A	20598.77	.	AC=2;AF=1.00;AN=2;DB;DP=788;set=Intersection	GT:AD:AF:DP	1/1:0,784:1.00:784
chr20	1293247	rs2273959	C	T	24659.77	.	AC=2;AF=1.00;AN=2;DB;DP=937;set=Intersection	GT:AD:AF:DP	1/1:2,932:1.00:934
chr20	1298794	rs6078610	G	A	3458.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	1301187	rs181166209	G	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	1356261	rs6074549	G	C	17499.77	.	AC=2;AF=1.00;AN=2;DB;DP=664;set=Intersection	GT:AD:AF:DP	1/1:0,661:1.00:661
chr20	1433673	.	C	T	1426.77	.	AC=1;AF=0.500;AN=2;DP=220;set=Intersection	GT:AD:AF:DP	0/1:139,79:0.36:218
chr20	1435905	rs6042377	T	C	2055.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	1459060	rs6042507	T	G	6948.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:1,266:1.00:267
chr20	1600524	rs1535882	T	C	8831.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	1610939	rs3746722	G	A	1870.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	1615959	rs9305125	T	C	10046.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:0,362:1.00:362
chr20	1616206	rs6043409	A	G	6523.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	1616816	rs71964196	GGT	G	19299.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,453:1.00:453
chr20	1617069	rs2277761	A	G	7410.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	1629547	rs6110775	T	C	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	1629604	rs6074948	A	C	3144.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	1629906	rs6079967	C	T	10071.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr20	2082732	rs6112857	C	G	1267.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	2290333	rs214803	C	A	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=1.248;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	2290532	rs214804	T	G	3298.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	2290547	rs214805	C	T	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	2291570	.	C	T	680.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:74,37:0.33:111
chr20	2297790	rs214814	G	A	1416.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	2321105	rs214830	G	C	10356.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,380:1.00:380
chr20	2321363	rs214831	A	G	3990.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr20	2321665	rs214832	T	C	5222.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	2361684	rs2422753	C	T	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.41;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	2361794	rs16984767	G	A	1471.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	2375262	rs2076405	A	G	3221.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	2411731	rs71329366	CAG	C	4925.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	2413125	rs2076653	CC	TT	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.17;SOR=1.247;set=HC	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	2413320	rs2076652	T	C	5052.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr20	2442273	rs6049216	C	A	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	2443116	rs6036572	G	A	4328.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr20	2443441	rs2143862	G	A	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	2451451	rs6049288	G	T	14297.77	.	AC=2;AF=1.00;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	1/1:0,534:1.00:534
chr20	2451504	rs6049290	C	T	8180.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr20	2474081	rs4815270	T	C	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	2542669	rs7270277	C	T	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	2552802	.	CT	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;ClippingRankSum=0.000;DP=170;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=1.478;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:116,41:0.26:157
chr20	2593006	rs1015159	A	G	2372.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:2,95:0.98:97
chr20	2596969	rs4621228	T	A	5134.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	2596998	rs4481063	G	A	5042.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	2597073	rs4544508	T	G	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=27.04;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	2597978	rs4815428	G	A	17504.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,640:1.00:640
chr20	2598019	rs6083866	C	T	12526.77	.	AC=2;AF=1.00;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	1/1:2,454:1.00:456
chr20	2616556	rs910271	T	C	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	2616679	rs2422808	C	G	5799.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr20	2617993	rs6083914	C	T	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	2618033	.	C	CAAA,CAAAA	3297.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.558;ClippingRankSum=0.000;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.74;MQRankSum=-0.179;QD=34.00;ReadPosRankSum=-0.220;SOR=1.643;set=HC	GT:AD:AF:DP	1/2:3,34,60:0.35,0.62:97
chr20	2618094	rs6037181	G	A	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr20	2618140	rs6083915	T	C	8835.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	2618308	rs6050771	C	T	2433.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	2621998	rs6050798	T	C	4975.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	2633234	rs6115305	T	G	601.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.98;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	2633244	rs4815467	A	C	635.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.72;QD=42.38;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	2633296	rs6138678	G	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.79;QD=27.31;SOR=1.358;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	2633378	.	A	AGAGCCTGGGCCTGGGCCTGGGCCT	3431.73	.	AC=2;AF=1.00;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	2633404	rs6115307	C	G	1903.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	2633936	rs2073194	T	C	6656.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr20	2644407	rs2073193	C	G	8215.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr20	2673644	.	GGGCGCT	G	278.76	.	AC=2;AF=1.00;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	2686431	rs11468393	CCA	C	1019.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=116;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=28.33;ReadPosRankSum=-0.145;SOR=0.916;set=HC	GT:AD:AF:DP	1/1:1,35:0.97:36
chr20	2732902	rs2235813	C	G	2056.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.39;SOR=0.876;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	2732951	rs149223102	C	T	1368.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:1,54:0.98:55
chr20	2739583	rs2073125	T	C	7520.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.901;set=HC	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	2778075	rs127076	T	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	2797137	rs11475648	GC	G	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=13.700;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.414;QD=3.82;ReadPosRankSum=0.890;SOR=0.050;set=HC	GT:AD:AF:DP	0/1:70,28:0.29:98
chr20	2821601	rs2297047	C	T	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	2846289	rs677344	G	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	2904143	rs633284	A	T	421.85	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.420;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.23;ReadPosRankSum=1.250;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:3,23:0.88:26
chr20	2945759	rs1178027	C	T	11554.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr20	2996423	rs1178015	T	A	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	2996497	rs1178016	C	T	8777.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	2996589	rs1178017	G	T	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	3002889	rs544090	A	C	8689.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr20	3005413	rs568235	G	A	402.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	3007228	rs571058	G	A	4272.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr20	3007492	rs599538	T	C	4279.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	3007694	rs10668644	A	AGGT	3210.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	3027415	rs3216762	GC	G	2275.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	3063545	.	A	C	80.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;ClippingRankSum=0.000;DP=15;ExcessHet=3.0103;FS=23.015;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.638;SOR=3.220;set=HC	GT:AD:AF:DP	0/1:10,4:0.29:14
chr20	3063550	.	G	C	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=21.553;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=6.06;ReadPosRankSum=-1.041;SOR=3.221;set=HC	GT:AD:AF:DP	0/1:9,4:0.31:13
chr20	3063587	rs200820983	G	GC	512.14	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,23:0.88:26
chr20	3090848	rs708973	T	G	2836.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	3147468	rs17853865	G	A	12652.77	.	AC=2;AF=1.00;AN=2;DB;DP=495;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,491:1.00:491
chr20	3147762	rs6051612	A	G	6261.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	3199373	rs2422861	G	A	1625.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	3211064	rs3810561	A	C	1713.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	3211719	rs3803953	T	G	17346.77	.	AC=2;AF=1.00;AN=2;DB;DP=637;set=Intersection	GT:AD:AF:DP	1/1:0,636:1.00:636
chr20	3214819	rs3827075	T	G	16137.77	.	AC=2;AF=1.00;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	1/1:1,623:1.00:624
chr20	3215049	rs3842433	T	TCCAGCCC	3582.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	3215548	rs3803957	C	A	13006.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,496:1.00:496
chr20	3218355	rs3827076	C	G	4857.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	3218634	rs3810562	G	C	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	3219692	rs6084314	C	T	6394.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr20	3219894	rs6107260	A	G	2821.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr20	3236015	rs1569942	A	G	3626.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	3285140	rs2422864	T	C	8211.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,311:1.00:311
chr20	3298881	rs59462924	CAA	C	977.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.604;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=3.226;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.429;QD=19.95;ReadPosRankSum=-2.006;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:7,42:0.86:49
chr20	3311438	.	C	CT	222.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=6.139;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=1.127;QD=5.57;ReadPosRankSum=0.208;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:17,23:0.57:40
chr20	3355567	rs2208030	T	C	2746.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	3452213	rs199693672	C	A	1421.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	3541633	rs235577	A	G	2535.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr20	3553299	rs11475024	TA	T	677.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.674;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.952;MLEAC=2;MLEAF=1.000;MQ=60.59;MQRankSum=0.677;QD=13.03;ReadPosRankSum=-1.092;SOR=0.330;set=HC	GT:AD:AF:DP	1/1:5,47:0.90:52
chr20	3557342	.	G	GTCTGTCTGTCTATCTA	1465.73	.	AC=2;AF=1.00;AN=2;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	3564453	.	C	CA	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=-0.948;SOR=0.788;set=HC	GT:AD:AF:DP	0/1:58,14:0.19:72
chr20	3564672	rs235540	C	T	5824.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	3564772	rs170976	T	A	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	3565546	rs235538	C	G	9900.77	.	AC=2;AF=1.00;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr20	3575248	rs235532	G	C	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	3605059	rs235519	A	G	7515.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr20	3640467	rs635674	C	T	3278.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	3640499	rs679393	C	T	4602.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	3643876	rs12624874	C	T	4828.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	3644178	.	C	T	2630.77	.	AC=2;AF=1.00;AN=2;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	3649492	.	GC	AG	860.77	.	AC=2;AF=1.00;AN=2;DP=20;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	3649528	.	G	C	1329.77	.	AC=2;AF=1.00;AN=2;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	3649679	rs543749	G	T	2160.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	3649713	rs628965	A	G	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.61;SOR=1.159;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	3649721	rs628977	T	C	2352.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.39;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	3650066	rs630712	C	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	3651742	rs528557	C	G	4091.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:1,155:0.99:156
chr20	3652207	rs612709	G	A	12934.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr20	3655085	rs511898	C	T	1509.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	3669743	rs150416931	C	A	6437.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr20	3670061	rs3746634	G	A	1066.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	3671891	rs3859664	G	A	1265.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr20	3672836	rs910653	G	A	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	3673815	rs2474436	A	G	3102.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	3674821	rs59383643	G	GAC	1580.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.208;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=0.000;QD=11.21;ReadPosRankSum=0.593;SOR=0.782;set=HC	GT:AD:AF:DP	0/1:61,80:0.57:141
chr20	3675333	rs3746638	G	A	5182.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr20	3675498	rs709012	T	G	10407.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,395:1.00:395
chr20	3677095	rs11471725	T	TGCTG	637.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	3677357	rs501538	T	C	9936.77	.	AC=2;AF=1.00;AN=2;DB;DP=374;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr20	3677736	rs673114	T	G	3412.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr20	3682011	rs1018493	G	A	5411.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	3682149	rs13037869	G	A	12246.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr20	3682275	rs1018492	A	G	3775.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	3684022	rs611847	A	G	9983.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr20	3684729	rs625372	T	C	5456.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	3686436	rs6037651	C	T	9841.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr20	3723091	rs611073	A	G	5888.73	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	3731622	rs2474437	C	T	11795.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,478:1.00:478
chr20	3732225	rs60858447	G	A	8622.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr20	3732633	rs541760	C	T	24406.77	.	AC=2;AF=1.00;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	1/1:0,894:1.00:894
chr20	3740620	rs11470482	GCA	G	11888.73	.	AC=2;AF=1.00;AN=2;DB;DP=580;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:20,490:0.96:510
chr20	3759200	rs2281477	G	A	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr20	3759528	rs2281478	C	T	16924.77	.	AC=2;AF=1.00;AN=2;DB;DP=641;set=Intersection	GT:AD:AF:DP	1/1:1,635:1.00:636
chr20	3760548	rs6116037	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	3778433	rs3746644	T	C	4718.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	3779234	rs11569988	C	T	1049.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	3780857	rs140901750	T	TGGACTGGAGACCTGGTGCTAG	4617.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	3782702	rs2228465	G	A	2897.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	3783649	rs592687	G	C	14554.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:1,547:1.00:548
chr20	3784110	rs1056720	C	T	22666.77	.	AC=2;AF=1.00;AN=2;DB;DP=844;set=Intersection	GT:AD:AF:DP	1/1:0,841:1.00:841
chr20	3915885	rs241606	A	C	2805.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.93;SOR=1.683;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	3954789	rs2143236	T	A	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	4055656	rs6139292	C	A	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	4155935	rs2295484	G	T	14106.77	.	AC=2;AF=1.00;AN=2;DB;DP=542;set=Intersection	GT:AD:AF:DP	1/1:0,538:1.00:538
chr20	4157853	rs1535225	G	A	978.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	4202802	rs835873	A	G	6877.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	4229514	rs184418609	T	C	751.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.92;SOR=1.255;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	4680251	rs1799990	A	G	9517.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,366:1.00:366
chr20	4768136	rs55900827	T	C	3271.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	4768475	rs111533115	A	AAGGGACT	2590.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	4770440	rs2422992	G	A	747.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	4776659	rs4549182	G	A	8276.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,325:1.00:325
chr20	4837929	.	TACACACACACACACAC	T,TAC	2644.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.793;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.22;MQRankSum=0.291;QD=36.73;ReadPosRankSum=1.733;SOR=2.211;set=HC	GT:AD:AF:DP	1/2:1,25,46:0.35,0.64:72
chr20	4839897	rs35881880	T	TA	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.878;ClippingRankSum=0.000;DB;DP=336;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.40;ReadPosRankSum=1.030;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:264,51:0.16:315
chr20	4848271	rs10545639	TA	T	74.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.082;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.000;QD=2.08;ReadPosRankSum=0.541;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:22,14:0.39:36
chr20	4880132	rs71993570	AGCTCAATGCCTTCTGC	A	1527.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:2,52:0.96:54
chr20	5081748	rs41282108	C	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	5086939	rs6116651	A	T	1206.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.68;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	5098391	rs3730428	C	T	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	5099516	rs17349	G	A	9683.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chr20	5100185	rs17348	G	T	3406.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	5100209	rs17347	G	C	4885.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr20	5107632	rs11466986	C	CGGGCG	4550.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.97;SOR=1.202;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	5149064	rs6116671	A	C	539.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.52;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	5149065	rs6116672	A	C	129.80	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.612;ClippingRankSum=0.000;DB;DP=14;ExcessHet=3.0103;FS=3.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.98;ReadPosRankSum=-0.085;SOR=2.494;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr20	5149085	rs11287231	GA	G	251.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=4.262;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.32;ReadPosRankSum=-0.584;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:9,18:0.67:27
chr20	5159344	rs2295508	C	T	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	5169877	rs6038087	A	G	3286.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	5261029	rs6038114	G	A	1115.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	5261132	rs6038115	G	A	7741.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.850;set=HC	GT:AD:AF:DP	1/1:0,300:1.00:300
chr20	5261206	rs4553880	T	C	5968.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,232:1.00:232
chr20	5282619	rs3746681	A	T	3231.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	5283256	rs3746682	C	G	9092.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr20	5283376	rs3746684	G	A	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	5294461	rs8116536	G	A	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr20	5294496	rs8116897	C	T	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	5296798	rs7351709	T	C	13235.77	.	AC=2;AF=1.00;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	1/1:0,479:1.00:479
chr20	5454400	rs606389	A	T	10135.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,382:1.00:382
chr20	5454686	rs1060236	A	G	264.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	5548208	rs140359030	TAA	T	728.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=13.047;MLEAC=1;MLEAF=0.500;MQ=61.22;MQRankSum=1.479;QD=20.24;ReadPosRankSum=-0.333;SOR=3.039;set=HC	GT:AD:AF:DP	1/1:7,29:0.81:36
chr20	5556686	.	T	TAC	53	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=60.0;NF=2;NR=1;PP=53;QD=19.6666666667;SC=TACATACATATACACACACAC;SbPval=0.05;Source=Platypus;TC=15;TCF=2;TCR=13;TR=3;WE=5556694;WS=5556676;set=Platypus	GT:AD:AF:DP	1/0:12,3:0.20:15
chr20	5737643	rs78199174	G	A	4911.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	5752917	rs237420	A	G	2416.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	5753579	rs237422	C	T	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	5753733	rs77420900	C	G	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr20	5753752	rs55863360	T	C	4643.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr20	5843930	.	A	G	8907.77	.	AC=2;AF=1.00;AN=2;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	5903517	rs236151	A	G	9102.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr20	5905779	rs2821	C	A	6941.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=1.044;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr20	5922358	rs236175	G	A	970.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	5923203	rs394940	TT	CC	14708.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	5924781	rs236178	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	5926992	rs236180	C	T	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	5927218	rs236181	C	G	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	5933108	rs236110	C	A	12310.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,478:1.00:478
chr20	5935385	rs236114	T	C	6322.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,250:1.00:250
chr20	5935449	rs236115	C	T	4041.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr20	5948706	rs236100	A	G	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.90;SOR=1.195;set=HC	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	5948712	rs236101	C	T	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.73;SOR=1.146;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	5958367	rs34729681	TATA	T	1222.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	5975380	rs11422423	T	TA	133.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.000;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=0.632;QD=10.29;ReadPosRankSum=-1.645;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chr20	5987212	rs149662716	AGGC	A	790.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	5987267	rs2294971	A	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	5988095	rs4813786	A	G	8028.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr20	5990726	rs59996436	T	TG	725.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.75;MQRankSum=0.870;QD=27.91;ReadPosRankSum=-0.675;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:1,25:0.96:26
chr20	6011882	rs2423132	G	T	1182.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	6100002	rs6038363	C	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr20	6751034	rs1049007	A	G	21171.77	.	AC=2;AF=1.00;AN=2;DB;DP=809;set=Intersection	GT:AD:AF:DP	1/1:0,807:1.00:807
chr20	6759115	rs235768	A	T	9177.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,341:1.00:341
chr20	6759758	.	AAT	A	590.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=90;ExcessHet=3.0103;FS=2.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.48;ReadPosRankSum=0.257;SOR=0.407;set=HC	GT:AD:AF:DP	0/1:54,25:0.32:79
chr20	7894727	rs141825451	G	A	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	7921106	.	G	GT	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=1.415;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=1.265;SOR=0.396;set=HC	GT:AD:AF:DP	0/1:47,15:0.24:62
chr20	8130943	rs16994453	C	T	2176.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	8628696	rs2235947	G	A	4737.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	8639443	rs2076640	T	C	3803.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	8639474	rs2076639	C	A	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	8665502	.	G	GA	243.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.016;ClippingRankSum=0.000;DP=173;ExcessHet=3.0103;FS=5.353;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.280;QD=1.51;ReadPosRankSum=0.036;SOR=1.231;set=HC	GT:AD:AF:DP	0/1:122,39:0.24:161
chr20	8731580	.	CT	C	210.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.483;ClippingRankSum=0.000;DP=150;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.14;MQRankSum=0.970;QD=2.67;ReadPosRankSum=0.176;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:46,33:0.42:79
chr20	9288522	rs6077510	G	A	1737.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	9424810	rs6039471	A	C	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:1,70:0.99:71
chr20	9424904	rs6056629	C	A	3604.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	9438172	rs3746548	A	G	4529.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	9453567	rs2206389	T	C	450.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	9453901	rs61639466	ATT	A	518.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.072;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.514;QD=16.21;ReadPosRankSum=-1.399;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:6,26:0.81:32
chr20	9625003	rs4816157	G	A	4837.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	10019093	rs575534	A	G	11445.77	.	AC=2;AF=1.00;AN=2;DB;DP=418;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr20	10026357	rs685723	T	C	6234.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	10030188	rs652633	T	A	7008.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr20	10030452	rs524625	G	A	6043.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	10030931	rs656111	C	A	2996.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	10032413	rs683145	T	G	7596.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr20	10393145	rs221667	C	G	1890.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	10620275	rs1051421	G	A	8995.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr20	10620386	rs1051419	A	G	8409.77	.	AC=2;AF=1.00;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr20	10622080	rs3215563	CA	C	2223.73	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:3,111:0.97:114
chr20	10624924	.	T	TCTCA,TCTCACA	2050.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=82;set=Intersection	GT:AF:DP	1/2:0.26,0.61:74
chr20	10629129	rs34325313	A	C	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	10629525	rs35308216	T	C	606.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	10633237	rs1131695	G	A	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr20	10633313	rs6040055	T	C	2889.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	10639385	rs2273060	A	G	2959.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	11790885	rs3036550	C	CTT	1616.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	11791008	rs803665	C	T	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	11791094	rs803664	G	A	3013.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	11791211	rs803663	T	A	748.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	11830180	rs33956420	CT	C	1392.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.773;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;MQRankSum=0.259;QD=20.18;ReadPosRankSum=1.434;SOR=1.923;set=HC	GT:AD:AF:DP	1/1:1,68:0.99:69
chr20	12990044	rs3761895	T	C	7585.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr20	13029764	rs1431433	A	C	13950.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:1,543:1.00:544
chr20	13029862	rs919604	C	T	9109.77	.	AC=2;AF=1.00;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr20	13029920	rs934335	C	G	8913.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:1,335:1.00:336
chr20	13053018	rs243887	T	G	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:1,159:0.99:160
chr20	13053035	rs243888	A	G	3776.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	13071871	rs243874	C	A	2572.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	13074235	rs708937	G	A	7528.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr20	13090733	.	A	AT	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=1.333;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.79;ReadPosRankSum=1.394;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:50,13:0.21:63
chr20	13134931	rs2073303	C	G	2207.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	13597759	.	G	A	3244.77	.	AC=2;AF=1.00;AN=2;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	13698006	rs4239710	T	C	3162.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	13699400	rs200697617	C	CA,CATAAAAAACAAAAAACAAAAAAA	859.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=11;set=Intersection	GT:AF:DP	1/1:1.00:10
chr20	13699401	.	T	A	54	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=2;MGOF=11;MMLQ=28;MQ=60.0;NF=6;NR=1;PP=54;QD=12.6816017925;SC=ATTTAGAAACTACACTGCTAA;SbPval=0.76;Source=Platypus;TC=21;TCF=17;TCR=4;TR=7;WE=13699409;WS=13699390;set=Platypus	GT:AD:AF:DP	1/1:14,7:0.33:21
chr20	13699401	.	T	TAAAAAACAAAAAACAAAAAAAA	858.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=71.56;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	13740283	rs2297050	G	C	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	13743298	rs754796	A	G	437.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	13747441	rs3180370	A	G	1644.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.36;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	13750448	rs35589194	C	CA	541.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.55;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	13755728	rs201670186	CAA	C	460.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.94;ReadPosRankSum=1.446;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:2,19:0.90:21
chr20	13763896	rs28372964	C	CATTA	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	13769127	rs6042362	A	G	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	13845726	rs2073292	T	C	475.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	13845987	rs761811	C	T	7049.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr20	13847420	rs660710	A	G	8355.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr20	13868745	rs243910	T	C	2685.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	13869206	rs6135002	T	C	1064.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	13971235	rs3848777	C	T	3382.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr20	14066276	rs2990505	C	T	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	14830453	rs438632	C	T	2796.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	15948326	rs11467891	GA	G	258.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.019;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=0.910;QD=7.61;ReadPosRankSum=0.391;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:9,25:0.74:34
chr20	15967327	rs34675181	A	G	1759.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	16025192	rs11482445	C	CT	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=3.165;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.808;SOR=0.364;set=HC	GT:AD:AF:DP	0/1:125,39:0.24:164
chr20	16223865	rs2144897	T	C	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,355:1.00:355
chr20	16223922	rs1541065	T	C	8257.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr20	16224066	rs2144898	C	T	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	16347929	rs73093402	C	A	13580.77	.	AC=2;AF=1.00;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr20	16348291	rs41306786	T	G	10909.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,408:1.00:408
chr20	16351329	rs2144893	C	T	1086.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	16352234	rs11399338	C	CA	483.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.158;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.48;ReadPosRankSum=0.713;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:14,37:0.73:51
chr20	16359567	rs6034464	A	G	8728.77	.	AC=2;AF=1.00;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	1/1:1,338:1.00:339
chr20	16359650	rs8116503	C	T	11494.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,428:1.00:428
chr20	16362173	rs11306679	CA	C	196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.180;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=5.465;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=2.19;ReadPosRankSum=2.354;SOR=1.502;set=HC	GT:AD:AF:DP	0/1:59,31:0.34:90
chr20	16407960	rs2273425	A	C	928.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.02;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	16474864	.	TA	T	111.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304;ClippingRankSum=0.000;DP=39;ExcessHet=3.0103;FS=1.585;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.39;ReadPosRankSum=0.259;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr20	16554067	rs4814510	A	G	2129.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	16729262	rs6080387	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	16729654	rs10627353	A	AAGATG	5457.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	16730464	rs6075100	T	C	971.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	16730479	rs6075101	C	T	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	16730522	rs6135878	T	C	2625.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	16732004	rs12479958	T	C	276.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	17389830	rs2217182	T	C	2828.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	17436895	rs2021789	G	A	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.81;SOR=1.708;set=HC	GT:AD:AF:DP	1/1:0,248:1.00:248
chr20	17474690	rs6105762	T	G	11028.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr20	17474968	rs6080718	T	C	9478.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr20	17475217	rs6136118	C	T	11048.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr20	17477592	rs6080719	C	T	1172.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	17477751	rs6044850	A	G	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	17539168	rs6044883	A	G	1995.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	17597361	rs911348	A	G	3652.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	17599214	rs2328181	T	C	4350.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	17605111	rs13044147	T	G	7551.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	17605240	rs6034867	A	T	5249.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr20	17610729	rs6044917	T	C	1361.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	17617531	rs6044923	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	17622676	rs41276398	C	T	1442.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	17640009	rs13040917	A	C	16122.77	.	AC=2;AF=1.00;AN=2;DB;DP=622;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.20;QD=26.13;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,617:1.00:617
chr20	17674451	rs6080781	G	C	567.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	17705677	rs4814640	A	G	1466.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	18022171	rs1571431	C	T	11622.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr20	18118740	rs1205190	T	G	10487.77	.	AC=2;AF=1.00;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	1/1:1,386:1.00:387
chr20	18118829	rs2295181	A	T	6618.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:1,246:1.00:247
chr20	18123022	rs11299	T	C	2570.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr20	18143117	rs1205193	T	G	6358.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:1,226:1.00:227
chr20	18165129	.	GT	G	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.148;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.240;QD=1.94;ReadPosRankSum=0.161;SOR=0.421;set=HC	GT:AD:AF:DP	0/1:26,15:0.37:41
chr20	18167977	rs2747404	T	C	8410.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr20	18278814	rs34250688	T	TA	781.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	18286888	rs2328286	G	A	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	18291064	rs2424155	C	T	938.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	18296072	rs1033545	T	A	8078.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	18361603	rs1883938	T	C	11555.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr20	18393275	rs59695827	C	T	720.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	18393312	rs6075337	C	G	1405.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	18393499	rs6075338	C	T	2344.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	18414356	rs6035042	A	G	5015.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	18429497	rs6081147	T	C	1465.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.86;SOR=1.536;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	18429509	rs6105923	T	G	1539.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.29;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	18429510	.	CAAA	C,CAA	1305.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=42.12;SOR=2.910;set=HC	GT:AD:AF:DP	1/2:0,16,15:0.52,0.48:31
chr20	18446004	.	TTC	T	489	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=3;HapScore=1;MGOF=83;MMLQ=24;MQ=59.96;NF=0;NR=46;PP=489;QD=10.7608695652;SC=AGCAGTCATTTTCTCTCTCTC;SbPval=1.0;Source=Platypus;TC=113;TCF=2;TCR=111;TR=46;WE=18446013;WS=18445994;set=Platypus	GT:AD:AF:DP	1/0:67,46:0.41:113
chr20	18446022	.	C	CTA	599	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=98;MMLQ=28;MQ=59.95;NF=0;NR=49;PP=599;QD=12.3469387755;SC=CTCTCTCTCTCTCTATATATA;SbPval=1.0;Source=Platypus;TC=88;TCF=1;TCR=87;TR=49;WE=18446032;WS=18446012;set=Platypus	GT:AD:AF:DP	0/1:39,49:0.56:88
chr20	18446024	rs6111974	C	A	3231.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:6,129:0.96:135
chr20	18446050	rs111987137	A	ATGTGCACTTATAGC	3681.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=43.83;SOR=2.726;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	18448079	rs1474974	C	A	5636.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	18460614	rs6035056	A	T	2799.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	18461237	rs57962043	GT	G	775.74	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:6,50:0.89:56
chr20	18462421	rs1055171	A	G	7775.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr20	18462492	rs4813332	A	G	2312.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	18462518	rs6111983	C	G	1202.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	18464110	rs3827965	T	C	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.70;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	18470664	rs3748450	A	G	2144.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.961;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	18470980	rs2424217	A	G	15754.77	.	AC=2;AF=1.00;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr20	18477614	rs2247746	A	G	6616.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	18477870	rs2247757	T	A	4400.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	18505403	rs3762200	G	C	1832.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	18506616	rs911115	TG	CA	3660.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	18511456	rs6081189	A	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.14;QD=29.67;SOR=1.194;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	18511458	.	CT	C	150.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.283;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.156;QD=3.35;ReadPosRankSum=2.204;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:27,18:0.40:45
chr20	18511504	rs3762201	T	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	18523864	rs2295557	C	T	1441.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	18535982	rs1555363	A	G	1180.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	18548293	rs11475009	TC	T	13214.73	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr20	18550218	rs71194252	CT	C	210.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.221;ClippingRankSum=-0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.05;ReadPosRankSum=0.140;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:1,14:0.93:15
chr20	18568918	rs6075372	A	G	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	18576912	rs1884875	C	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	18608945	rs3818220	G	C	915.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	18794714	rs1053834	C	T	3988.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	18794754	rs1053839	C	T	4745.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr20	18806046	rs6136525	C	T	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.763;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	18810705	rs6136530	C	T	16300.77	.	AC=2;AF=1.00;AN=2;DB;DP=616;set=Intersection	GT:AD:AF:DP	1/1:0,615:1.00:615
chr20	19193682	rs6106031	C	T	3031.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	19646436	.	CGTGT	C,CGT	1757.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=2.479;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.63;MQRankSum=0.717;QD=24.41;ReadPosRankSum=0.188;SOR=1.754;set=HC	GT:AD:AF:DP	1/2:6,22,44:0.31,0.61:72
chr20	19654454	rs1406971	A	G	2043.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	19677615	rs113059140	AAGGGAGGGAGGG	A	1080.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.62;QD=41.57;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	19867256	.	CTT	C,CT	895.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.265;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=1.924;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.46;MQRankSum=0.608;QD=14.00;ReadPosRankSum=1.157;SOR=0.904;set=HC	GT:AD:AF:DP	1/2:5,28,31:0.44,0.48:64
chr20	20018882	.	T	TA	119.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=2.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=-0.214;SOR=1.172;set=HC	GT:AD:AF:DP	0/1:56,22:0.28:78
chr20	20071634	rs6046614	T	C	7110.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr20	20079251	.	C	CAAAAA	331.14	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.607;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.40;ReadPosRankSum=0.841;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chr20	20079500	rs1883797	A	G	2555.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	20139951	rs11475376	GC	G	6112.73	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	20140196	rs2179823	T	C	890.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	20146875	rs6046679	C	T	464.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	20150027	rs6075630	C	T	8545.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr20	20150182	rs6112802	A	T	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	20152462	rs996197	A	C	7215.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	20152581	rs2328500	G	A	3147.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	20168497	rs2179825	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	20180288	rs11474984	AT	A	1762.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:4,92:0.96:96
chr20	20180607	rs113471258	G	A	2357.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr20	20243558	rs34200155	A	G	2070.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	20257958	rs2424317	C	T	6509.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:2,249:0.99:251
chr20	20269631	rs1410263	C	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	20348962	rs111558392	C	T	12034.77	.	AC=2;AF=1.00;AN=2;DB;DP=470;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,470:1.00:470
chr20	20350516	rs6137007	T	G	5004.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	20377421	rs11426947	A	AC	16860.73	.	AC=2;AF=1.00;AN=2;DB;DP=542;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;QD=31.46;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,536:1.00:536
chr20	20445793	.	T	TCTCACACACA	2242.73	.	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.83;QD=40.78;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	20609964	.	AACACACACACAC	A,AAC	3164.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=99;set=Intersection	GT:AF:DP	1/2:0.30,0.69:88
chr20	21106598	.	G	A	1965.77	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	21106714	rs5840900	C	CG	11987.73	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr20	21117240	rs11476720	GT	G	556.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.534;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=1.284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.85;ReadPosRankSum=-0.453;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:12,35:0.74:47
chr20	21126194	rs6047271	C	G	1394.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.83;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	21142454	rs11482592	A	AC	4049.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=63.72;MQRankSum=0.245;QD=25.96;ReadPosRankSum=-1.193;SOR=0.638;set=HC	GT:AD:AF:DP	1/1:4,152:0.97:156
chr20	21142523	rs4815025	C	G	9924.77	.	AC=2;AF=1.00;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	1/1:1,368:1.00:369
chr20	21142813	rs2236178	T	C	13520.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr20	21186161	rs11087346	A	AG	6804.73	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	21186296	rs11321878	TA	T	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=1.994;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=-1.044;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:72,28:0.28:100
chr20	21227314	rs6047326	C	T	952.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	21307107	rs2296728	A	G	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	21307389	.	T	A	692.77	.	AC=2;AF=1.00;AN=2;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	21313109	rs11481754	T	TA	1848.82	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:16,103:0.87:119
chr20	21319828	rs202844	A	G	1943.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr20	21321294	rs202845	C	T	1385.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr20	21327112	.	C	G	9130.77	.	AC=2;AF=1.00;AN=2;DP=356;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.79;SOR=0.704;set=HC	GT:AD:AF:DP	1/1:0,354:1.00:354
chr20	21328715	rs11087351	GT	G	1472.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	21336825	rs3787500	G	A	4076.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	21346441	rs11467475	TATATA	T	99.25	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	21362703	rs11476840	TA	T	7628.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr20	21362758	rs6047417	T	G	3818.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr20	22562674	rs1212275	T	C	11850.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.664;ClippingRankSum=0.000;DB;DP=502;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=-0.319;SOR=0.514;set=HC	GT:AD:AF:DP	1/1:5,460:0.99:465
chr20	23016705	rs201932831	C	T	6823.77	.	AC=1;AF=0.500;AN=2;DB;DP=1098;set=Intersection	GT:AD:AF:DP	0/1:721,367:0.34:1088
chr20	23016970	rs3746726	T	G	18302.77	.	AC=2;AF=1.00;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	1/1:1,696:1.00:697
chr20	23017017	rs2567609	T	C	19869.77	.	AC=2;AF=1.00;AN=2;DB;DP=723;set=Intersection	GT:AD:AF:DP	1/1:0,721:1.00:721
chr20	23017044	rs3746728	C	T	19339.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr20	23017082	rs2567608	T	C	18205.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,666:1.00:666
chr20	23064810	rs11087413	C	T	8872.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr20	23065209	rs3746731	G	A	8469.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,307:1.00:307
chr20	23065342	rs3746732	A	G	9973.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr20	23370503	.	C	T	3224.77	.	AC=2;AF=1.00;AN=2;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	23377815	rs17750862	G	A	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	23401904	rs377282170	ACCC	A,AC	16098.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.381;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=35.85;ReadPosRankSum=-1.527;SOR=0.497;set=HC	GT:AD:AF:DP	1/2:1,100,348:0.22,0.78:449
chr20	23472391	rs2983288	A	G	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	23476412	.	CTT	C,CT	2038.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.490;ClippingRankSum=0.000;DP=116;ExcessHet=3.0103;FS=5.168;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;MQRankSum=0.274;QD=19.05;ReadPosRankSum=-1.364;SOR=2.112;set=HC	GT:AD:AF:DP	1/2:4,78,25:0.73,0.23:107
chr20	23529377	rs3004129	G	A	2780.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	23529388	rs2983611	C	T	2965.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr20	23548774	rs2983617	T	C	3833.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	23584116	rs726217	G	A	4996.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr20	23586184	rs2983639	T	C	1901.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	23586360	rs2983640	G	A	6133.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr20	23615819	.	TCA	T	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;ClippingRankSum=0.000;DP=224;ExcessHet=3.0103;FS=1.881;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=0.011;QD=0.86;ReadPosRankSum=-0.300;SOR=0.457;set=HC	GT:AD:AF:DP	0/1:183,32:0.15:215
chr20	23618395	rs6138024	T	C	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr20	23666484	rs6138037	T	G	2272.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=27.06;SOR=1.754;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	23666606	rs112139500	C	T	3262.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	23666690	rs2282378	C	G	1723.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	23667865	rs112308292	C	A	27785.77	.	AC=2;AF=1.00;AN=2;DB;DP=1047;MQ=59.43;set=Intersection	GT:AD:AF:DP	1/1:1,1042:1.00:1043
chr20	23669630	rs7267397	A	G	5948.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	23729722	rs3188314	G	T	29866.77	.	AC=2;AF=1.00;AN=2;DB;DP=1121;set=Intersection	GT:AD:AF:DP	1/1:0,1120:1.00:1120
chr20	23731494	rs6076122	A	G	7650.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	23731560	rs6076123	C	T	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	23731589	rs113896553	G	C	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr20	23805832	rs6036548	G	A	4898.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	23806008	rs6106729	C	T	8810.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;MQ=59.33;set=Intersection	GT:AD:AF:DP	1/1:0,334:1.00:334
chr20	23806929	rs58314206	A	C	3936.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	23807028	rs4407312	A	C	12743.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,484:1.00:484
chr20	23807308	rs6106731	G	C	2069.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	23807360	rs6106732	G	A	994.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	23857982	rs2071445	A	G	2591.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	23858334	rs2071444	G	A	1586.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	23860178	rs1799841	A	G	10878.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,416:1.00:416
chr20	24524218	rs4815274	C	G	5811.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	24524245	rs4813519	A	G	3566.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	24939590	rs1056033	G	C	4706.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	24944933	rs761368	T	C	2163.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	24945079	rs10534910	AGGC	A	8472.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	24950373	rs2064404	A	C	1572.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	24954162	rs66649227	AG	A	1188.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	24959382	rs11087491	C	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.82;SOR=0.869;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	24959385	rs6083703	A	C	1592.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	24987438	rs6083718	C	T	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr20	25004071	rs4813543	G	T	3050.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr20	25027526	rs6083730	G	A	13006.77	.	AC=2;AF=1.00;AN=2;DB;DP=502;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.721;set=HC	GT:AD:AF:DP	1/1:0,501:1.00:501
chr20	25027630	rs6106989	G	A	4196.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr20	25027692	rs6115015	G	A	1274.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	25176296	rs6083773	A	C	1663.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.21;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	25195509	rs6050446	A	G	3363.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	25196394	rs373739975	C	T	3044.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	25197982	rs4815394	T	C	3905.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	25203663	.	C	G	379	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=10;HapScore=2;MGOF=10;MMLQ=23;MQ=59.82;NF=0;NR=27;PP=379;QD=15.324859724;SC=CGGCAGGGGGCGGGGGTGGAG;SbPval=1.0;Source=Platypus;TC=96;TCF=41;TCR=55;TR=27;WE=25203671;WS=25203653;set=Platypus	GT:AD:AF:DP	0/1:69,27:0.28:96
chr20	25258044	rs57671803	A	C	5160.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr20	25282967	rs746748	C	T	2071.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	25288505	rs884613	C	T	130.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.18;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	25288632	rs6107027	G	A	2584.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.65;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	25295787	rs2297496	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	25320228	rs6050544	T	A	9608.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,359:1.00:359
chr20	25371112	rs139848340	GGCCCCC	G	4742.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	25371125	rs77202707	C	G	5105.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.51;SOR=1.089;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	25371378	rs145380090	G	GGCCTCCGCC	1698.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	25398790	rs6076347	G	A	7690.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr20	25398876	rs4815425	G	C	2806.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	25448256	rs77136063	G	A	1969.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	25459919	rs84816	G	A	2243.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	25462464	rs76753687	A	G	2270.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	25520827	rs11472175	A	AAC	7179.73	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr20	25755558	rs113169583	G	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.00;MQRankSum=-0.854;QD=4.72;ReadPosRankSum=0.619;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,2:0.25:8
chr20	25755574	.	G	A	31.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981;ClippingRankSum=-0.000;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.36;MQRankSum=-1.981;QD=4.54;ReadPosRankSum=0.366;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:5,2:0.29:7
chr20	25755984	rs368432091	AAGAAAG	A	138.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.524;ClippingRankSum=0.000;DB;DP=184;ExcessHet=3.0103;FS=2.066;MLEAC=1;MLEAF=0.500;MQ=57.67;MQRankSum=-10.298;QD=0.81;ReadPosRankSum=-1.351;SOR=0.987;set=HC	GT:AD:AF:DP	0/1:153,19:0.11:172
chr20	25755988	.	AAG	A	249.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.569;ClippingRankSum=0.000;DP=182;ExcessHet=3.0103;FS=10.702;MLEAC=1;MLEAF=0.500;MQ=57.64;MQRankSum=-1.128;QD=1.80;ReadPosRankSum=0.793;SOR=0.540;set=HC	GT:AD:AF:DP	0/1:117,22:0.16:139
chr20	25756020	rs139676733	CA	C	163.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-6.075;QD=1.67;ReadPosRankSum=-0.271;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:75,23:0.23:98
chr20	25829184	rs74788234	A	G	1848.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:60,61:0.50:121
chr20	25829290	rs75735480	G	T	3478.77	.	AC=1;AF=0.500;AN=2;DB;DP=666;set=Intersection	GT:AD:AF:DP	0/1:484,179:0.27:663
chr20	25829319	rs76467023	A	G	7612.77	.	AC=1;AF=0.500;AN=2;DB;DP=755;set=Intersection	GT:AD:AF:DP	0/1:535,219:0.29:754
chr20	25829329	.	A	T	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.739;ClippingRankSum=0.000;DP=761;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-15.598;QD=2.24;ReadPosRankSum=-1.597;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:669,91:0.12:760
chr20	25829335	.	C	G	1723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.270;ClippingRankSum=0.000;DP=749;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.68;MQRankSum=-15.014;QD=2.30;ReadPosRankSum=-2.576;SOR=0.694;set=HC	GT:AD:AF:DP	0/1:658,90:0.12:748
chr20	25829342	rs75063166	T	C	8246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.613;ClippingRankSum=0.000;DB;DP=731;ExcessHet=3.0103;FS=0.560;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-25.423;QD=11.30;ReadPosRankSum=-7.435;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:500,230:0.32:730
chr20	25829352	rs74961672	T	C	7408.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.653;ClippingRankSum=0.000;DB;DP=671;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.47;MQRankSum=-23.954;QD=11.09;ReadPosRankSum=-8.257;SOR=0.709;set=HC	GT:AD:AF:DP	0/1:463,205:0.31:668
chr20	25829384	rs75757905	T	C	2938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.112;ClippingRankSum=0.000;DB;DP=446;ExcessHet=3.0103;FS=4.049;MLEAC=1;MLEAF=0.500;MQ=54.95;MQRankSum=-18.643;QD=6.62;ReadPosRankSum=1.312;SOR=1.075;set=HC	GT:AD:AF:DP	0/1:340,104:0.23:444
chr20	25829384	.	TTA	CTG	2944	.	AC=1;AF=0.500;AN=2;BRF=0.25;FR=0.5000;HP=1;HapScore=1;MGOF=28;MMLQ=28;MQ=47.9;NF=56;NR=103;PP=2944;QD=20;SC=AGTTCGCAAGTTAGGCTTCCT;SbPval=0.77;Source=Platypus;TC=507;TCF=204;TCR=303;TR=159;WE=25829394;WS=25829374;set=Platypus	GT:AD:AF:DP	1/0:348,159:0.31:507
chr20	25829386	rs74835374	A	G	2962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.062;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=5.138;MLEAC=1;MLEAF=0.500;MQ=54.85;MQRankSum=-18.309;QD=6.89;ReadPosRankSum=1.875;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:328,102:0.24:430
chr20	25829435	rs79037868	C	T	1119.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:177,67:0.27:244
chr20	25829436	rs73348912	T	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=244;ExcessHet=3.0103;FS=1.736;MLEAC=1;MLEAF=0.500;MQ=51.32;MQRankSum=-6.340;QD=0.76;ReadPosRankSum=1.709;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:211,33:0.14:244
chr20	25829470	rs75119730	A	T	191.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.713;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=2.777;MLEAC=1;MLEAF=0.500;MQ=50.69;MQRankSum=-4.451;QD=1.32;ReadPosRankSum=-0.249;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:123,22:0.15:145
chr20	25900042	rs11699407	A	C	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chr20	25900078	rs78346173	A	C	517.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=5.844;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-0.849;QD=3.98;ReadPosRankSum=0.832;SOR=0.285;set=HC	GT:AD:AF:DP	0/1:96,34:0.26:130
chr20	25900128	rs79754881	A	T	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.470;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=5.404;MLEAC=1;MLEAF=0.500;MQ=55.57;MQRankSum=0.894;QD=2.62;ReadPosRankSum=2.109;SOR=1.089;set=HC	GT:AD:AF:DP	0/1:210,56:0.21:266
chr20	25900135	rs11699441	C	A	2136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.17;MQRankSum=-0.553;QD=8.16;ReadPosRankSum=-1.626;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:169,93:0.35:262
chr20	25900162	rs6037279	C	A	2576.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:181,87:0.32:268
chr20	25900164	rs138554349	CCAA	C	1826.73	.	AC=1;AF=0.500;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	0/1:238,62:0.21:300
chr20	25900190	rs199687742	AAATT	A	827.73	.	AC=1;AF=0.500;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	0/1:226,37:0.14:263
chr20	25900262	rs76621451	G	A	365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.071;ClippingRankSum=0.000;DB;DP=149;ExcessHet=3.0103;FS=10.971;MLEAC=1;MLEAF=0.500;MQ=50.20;MQRankSum=-5.476;QD=2.47;ReadPosRankSum=-0.271;SOR=1.784;set=HC	GT:AD:AF:DP	0/1:121,27:0.18:148
chr20	25900276	rs75406844	G	T	1080.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=7.286;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=31.432;MLEAC=1;MLEAF=0.500;MQ=50.83;MQRankSum=-7.917;QD=8.19;ReadPosRankSum=0.279;SOR=3.188;set=HC	GT:AD:AF:DP	0/1:99,33:0.25:132
chr20	25900286	rs76626696	G	T	757.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.653;ClippingRankSum=0.000;DB;DP=121;ExcessHet=3.0103;FS=34.182;MLEAC=1;MLEAF=0.500;MQ=52.51;MQRankSum=-7.856;QD=6.26;ReadPosRankSum=-0.170;SOR=3.853;set=HC	GT:AD:AF:DP	0/1:96,25:0.21:121
chr20	26063560	rs5742261	G	A	6724.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.94;QD=26.27;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,256:1.00:256
chr20	26063643	rs41275516	G	A	104.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=2.456;MLEAC=1;MLEAF=0.500;MQ=58.88;MQRankSum=-12.386;QD=0.68;ReadPosRankSum=1.926;SOR=1.140;set=HC	GT:AD:AF:DP	0/1:141,14:0.09:155
chr20	26063645	rs73105823	G	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=2.460;MLEAC=1;MLEAF=0.500;MQ=58.86;MQRankSum=-12.264;QD=0.87;ReadPosRankSum=2.046;SOR=1.148;set=HC	GT:AD:AF:DP	0/1:138,14:0.09:152
chr20	26063684	rs78016604	A	G	144.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=3.047;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-9.510;QD=1.57;ReadPosRankSum=1.111;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:82,10:0.11:92
chr20	26063696	rs374797956	A	T	198.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.193;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.15;MQRankSum=-8.445;QD=2.72;ReadPosRankSum=-0.943;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:63,10:0.14:73
chr20	26063712	rs113808324	A	T	72.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=5.005;MLEAC=1;MLEAF=0.500;MQ=58.31;MQRankSum=-7.099;QD=1.40;ReadPosRankSum=-1.207;SOR=2.049;set=HC	GT:AD:AF:DP	0/1:46,6:0.12:52
chr20	26094475	rs374094583	AC	A	3584.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=391;ExcessHet=3.0103;FS=3.788;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-6.945;QD=9.19;ReadPosRankSum=-0.192;SOR=0.907;set=HC	GT:AD:AF:DP	0/1:286,104:0.27:390
chr20	26094483	rs146324498	CAT	C	3622.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.170;ClippingRankSum=0.000;DB;DP=438;ExcessHet=3.0103;FS=2.070;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-7.858;QD=8.33;ReadPosRankSum=0.550;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:322,113:0.26:435
chr20	26094564	rs79802274	T	G	2830.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.722;ClippingRankSum=0.000;DB;DP=668;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.33;MQRankSum=-1.035;QD=4.33;ReadPosRankSum=-0.640;SOR=0.670;set=HC	GT:AD:AF:DP	0/1:474,180:0.28:654
chr20	26094567	rs62211581	T	C	7389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247;ClippingRankSum=0.000;DB;DP=660;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=57.30;MQRankSum=-10.179;QD=11.46;ReadPosRankSum=1.339;SOR=0.588;set=HC	GT:AD:AF:DP	0/1:410,235:0.36:645
chr20	26094605	rs150462295	G	A	3407.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.621;ClippingRankSum=0.000;DB;DP=469;ExcessHet=3.0103;FS=3.023;MLEAC=1;MLEAF=0.500;MQ=56.14;MQRankSum=-2.183;QD=7.28;ReadPosRankSum=1.564;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:359,109:0.23:468
chr20	26094609	rs80248029	C	A	3378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.302;ClippingRankSum=0.000;DB;DP=443;ExcessHet=3.0103;FS=3.027;MLEAC=1;MLEAF=0.500;MQ=55.91;MQRankSum=-1.967;QD=7.64;ReadPosRankSum=1.192;SOR=1.033;set=HC	GT:AD:AF:DP	0/1:336,106:0.24:442
chr20	26094638	rs76011113	C	T	1478.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944;ClippingRankSum=0.000;DB;DP=268;ExcessHet=3.0103;FS=1.749;MLEAC=1;MLEAF=0.500;MQ=55.36;MQRankSum=-2.889;QD=5.54;ReadPosRankSum=-1.833;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:190,77:0.29:267
chr20	26094648	rs138948176	CTG	C	292.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.328;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=3.420;MLEAC=1;MLEAF=0.500;MQ=54.61;MQRankSum=-6.121;QD=1.41;ReadPosRankSum=-2.704;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:184,23:0.11:207
chr20	26094651	rs77014314	T	C	1530.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-3.271;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=54.68;MQRankSum=-4.182;QD=7.58;ReadPosRankSum=-0.452;SOR=0.896;set=HC	GT:AD:AF:DP	0/1:149,53:0.26:202
chr20	26094660	rs75350116	T	C	2315.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.473;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.721;MLEAC=1;MLEAF=0.500;MQ=54.17;MQRankSum=-7.603;QD=14.03;ReadPosRankSum=-2.762;SOR=0.419;set=HC	GT:AD:AF:DP	0/1:103,62:0.38:165
chr20	26094689	rs79312112	A	C	529.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:60,24:0.29:84
chr20	29625745	rs73621455	A	T	707.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.600;ClippingRankSum=0.000;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.03;MQRankSum=0.024;QD=7.37;ReadPosRankSum=-1.570;SOR=1.114;set=HC	GT:AD:AF:DP	0/1:66,30:0.31:96
chr20	29625769	rs78251253	C	T	1842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;ClippingRankSum=0.000;DB;DP=239;ExcessHet=3.0103;FS=3.623;MLEAC=1;MLEAF=0.500;MQ=52.15;MQRankSum=-7.679;QD=7.71;ReadPosRankSum=-2.382;SOR=1.056;set=HC	GT:AD:AF:DP	0/1:184,55:0.23:239
chr20	29625774	.	G	C	1756.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.169;ClippingRankSum=0.000;DP=279;ExcessHet=3.0103;FS=10.640;MLEAC=1;MLEAF=0.500;MQ=52.96;MQRankSum=-6.224;QD=6.30;ReadPosRankSum=-3.092;SOR=0.276;set=HC	GT:AD:AF:DP	0/1:221,58:0.21:279
chr20	29625788	rs4635596	C	T	2496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.341;ClippingRankSum=0.000;DB;DP=413;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-3.319;QD=6.06;ReadPosRankSum=0.745;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:282,130:0.32:412
chr20	29625818	rs149947792	C	T	1379.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.692;ClippingRankSum=0.000;DB;DP=692;ExcessHet=3.0103;FS=2.326;MLEAC=1;MLEAF=0.500;MQ=54.23;MQRankSum=-8.602;QD=2.00;ReadPosRankSum=2.538;SOR=0.508;set=HC	GT:AD:AF:DP	0/1:554,137:0.20:691
chr20	29625838	rs62198353	C	A	11166.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:380,417:0.52:797
chr20	29625854	.	C	G	3712.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.576;ClippingRankSum=0.000;DP=995;ExcessHet=3.0103;FS=1.639;MLEAC=1;MLEAF=0.500;MQ=54.48;MQRankSum=-9.915;QD=3.74;ReadPosRankSum=5.435;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:844,149:0.15:993
chr20	29625856	.	A	G	3691.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.681;ClippingRankSum=0.000;DP=1011;ExcessHet=3.0103;FS=1.616;MLEAC=1;MLEAF=0.500;MQ=54.49;MQRankSum=-10.039;QD=3.66;ReadPosRankSum=5.183;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:858,151:0.15:1009
chr20	29625867	rs148671283	G	A	3456.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.986;ClippingRankSum=0.000;DB;DP=1096;ExcessHet=3.0103;FS=0.780;MLEAC=1;MLEAF=0.500;MQ=54.58;MQRankSum=-10.184;QD=3.16;ReadPosRankSum=4.351;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:942,152:0.14:1094
chr20	29625873	rs78003242	A	C	4023.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.961;ClippingRankSum=0.000;DB;DP=1127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-12.558;QD=3.75;ReadPosRankSum=2.210;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:893,179:0.17:1072
chr20	29625876	rs73611718	C	T	5204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.227;ClippingRankSum=0.000;DB;DP=1135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.59;MQRankSum=-13.792;QD=4.79;ReadPosRankSum=0.564;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:883,203:0.19:1086
chr20	29625895	rs76435412	G	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645;ClippingRankSum=0.000;DB;DP=1123;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.78;MQRankSum=-8.711;QD=0.35;ReadPosRankSum=1.032;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:973,146:0.13:1119
chr20	29625924	.	A	ACTT	1444.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DP=789;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.64;MQRankSum=-9.839;QD=2.01;ReadPosRankSum=-1.968;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:634,84:0.12:718
chr20	29625925	rs112430454	C	CTTG	3599.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=778;set=Intersection	GT:AD:AF:DP	0/1:512,126:0.20:638
chr20	29625928	.	G	A	1371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DP=720;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.60;MQRankSum=-10.158;QD=1.91;ReadPosRankSum=-0.328;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:640,78:0.11:718
chr20	29625935	rs62198354	A	G	6221.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.521;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=8.050;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-23.193;QD=10.39;ReadPosRankSum=-1.216;SOR=1.269;set=HC	GT:AD:AF:DP	0/1:425,174:0.29:599
chr20	29625946	rs80340867	A	G	849.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.016;ClippingRankSum=0.000;DB;DP=529;ExcessHet=3.0103;FS=3.309;MLEAC=1;MLEAF=0.500;MQ=55.46;MQRankSum=-12.130;QD=1.61;ReadPosRankSum=-0.557;SOR=1.164;set=HC	GT:AD:AF:DP	0/1:475,53:0.10:528
chr20	29625950	rs78096528	G	A	792.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.330;ClippingRankSum=0.000;DB;DP=500;ExcessHet=3.0103;FS=4.894;MLEAC=1;MLEAF=0.500;MQ=55.51;MQRankSum=-11.829;QD=1.59;ReadPosRankSum=-0.101;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:450,49:0.10:499
chr20	29625965	rs79873624	G	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.618;ClippingRankSum=0.000;DB;DP=433;ExcessHet=3.0103;FS=3.215;MLEAC=1;MLEAF=0.500;MQ=55.55;MQRankSum=-10.084;QD=1.57;ReadPosRankSum=0.393;SOR=1.213;set=HC	GT:AD:AF:DP	0/1:385,46:0.11:431
chr20	29625985	rs79368216	G	A	725.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.662;ClippingRankSum=0.000;DB;DP=342;ExcessHet=3.0103;FS=7.953;MLEAC=1;MLEAF=0.500;MQ=54.98;MQRankSum=-8.371;QD=2.13;ReadPosRankSum=0.674;SOR=1.312;set=HC	GT:AD:AF:DP	0/1:298,43:0.13:341
chr20	29625997	rs62198355	A	T	526.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.537;ClippingRankSum=0.000;DB;DP=279;ExcessHet=3.0103;FS=1.482;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-6.641;QD=1.94;ReadPosRankSum=-1.298;SOR=0.506;set=HC	GT:AD:AF:DP	0/1:223,48:0.18:271
chr20	29626027	rs2137756	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.815;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=2.232;MLEAC=1;MLEAF=0.500;MQ=56.04;MQRankSum=-1.173;QD=1.07;ReadPosRankSum=2.589;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:139,21:0.13:160
chr20	29628112	rs73621499	C	A	215.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=7.162;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-11.281;QD=1.67;ReadPosRankSum=-2.964;SOR=1.821;set=HC	GT:AD:AF:DP	0/1:114,15:0.12:129
chr20	29628125	.	TG	CA	672.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.988;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=17.597;JOINED;MLEAC=1;MLEAF=0.500;MQ=55.65;MQRankSum=-9.613;QD=3.43;ReadPosRankSum=-2.577;SOR=2.627;set=HC	GT:AD:AF:DP	0/1:169,27:0.14:196
chr20	29628128	rs73621500	C	T	1240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.023;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=19.529;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-12.918;QD=6.14;ReadPosRankSum=-5.130;SOR=2.299;set=HC	GT:AD:AF:DP	0/1:160,42:0.21:202
chr20	29628136	rs73621501	T	G	1488.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.508;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=2.440;MLEAC=1;MLEAF=0.500;MQ=55.00;MQRankSum=-10.928;QD=4.82;ReadPosRankSum=-5.291;SOR=0.894;set=HC	GT:AD:AF:DP	0/1:237,72:0.23:309
chr20	29628158	rs73605203	G	A	6207.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.710;ClippingRankSum=0.000;DB;DP=580;ExcessHet=3.0103;FS=1.207;MLEAC=1;MLEAF=0.500;MQ=54.87;MQRankSum=-13.357;QD=10.76;ReadPosRankSum=-5.829;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:379,198:0.34:577
chr20	29628164	rs62199575	G	A	15397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=0.000;DB;DP=689;ExcessHet=3.0103;FS=1.147;MLEAC=1;MLEAF=0.500;MQ=54.91;MQRankSum=-21.324;QD=22.45;ReadPosRankSum=-9.077;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:283,403:0.59:686
chr20	29628167	rs181840913	C	T	2480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730;ClippingRankSum=0.000;DB;DP=745;ExcessHet=3.0103;FS=2.570;MLEAC=1;MLEAF=0.500;MQ=55.05;MQRankSum=-6.494;QD=3.34;ReadPosRankSum=-3.115;SOR=0.435;set=HC	GT:AD:AF:DP	0/1:620,123:0.17:743
chr20	29628181	rs371105330	C	T	1244.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.173;ClippingRankSum=0.000;DB;DP=1000;ExcessHet=3.0103;FS=4.340;MLEAC=1;MLEAF=0.500;MQ=55.10;MQRankSum=-12.324;QD=1.28;ReadPosRankSum=-6.666;SOR=1.160;set=HC	GT:AD:AF:DP	0/1:858,116:0.12:974
chr20	29628225	.	AG	A	5366.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.763;ClippingRankSum=0.000;DP=1682;ExcessHet=3.0103;FS=0.680;MLEAC=1;MLEAF=0.500;MQ=53.92;MQRankSum=-6.747;QD=3.20;ReadPosRankSum=1.207;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:1363,313:0.19:1676
chr20	29628237	rs142752776	C	A	1354.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.611;ClippingRankSum=0.000;DB;DP=1693;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=53.99;MQRankSum=-10.821;QD=0.81;ReadPosRankSum=6.262;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:1416,262:0.16:1678
chr20	29628271	rs62199576	C	T	11482.77	.	AC=1;AF=0.500;AN=2;DB;DP=1565;set=Intersection	GT:AD:AF:DP	0/1:938,625:0.40:1563
chr20	29628335	rs11152455	A	T	4254.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.449;ClippingRankSum=0.000;DB;DP=838;ExcessHet=3.0103;FS=1.393;MLEAC=1;MLEAF=0.500;MQ=54.92;MQRankSum=-20.007;QD=5.18;ReadPosRankSum=-4.494;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:653,169:0.21:822
chr20	29628341	rs11152456	C	A	5499.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=8.140;ClippingRankSum=0.000;DB;DP=759;ExcessHet=3.0103;FS=3.022;MLEAC=1;MLEAF=0.500;MQ=55.19;MQRankSum=-24.479;QD=7.40;ReadPosRankSum=-2.467;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:568,175:0.24:743
chr20	29628361	rs11152457	A	C	2067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=9.280;ClippingRankSum=0.000;DB;DP=643;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.54;MQRankSum=-23.579;QD=3.22;ReadPosRankSum=3.670;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:518,124:0.19:642
chr20	29628431	rs11152458	C	T	2408.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:216,116:0.35:332
chr20	29628477	rs62199577	T	A	1565.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:95,62:0.39:157
chr20	29628488	rs11152459	C	T	50.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.844;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.15;MQRankSum=-0.215;QD=0.35;ReadPosRankSum=0.918;SOR=0.805;set=HC	GT:AD:AF:DP	0/1:126,18:0.12:144
chr20	29628498	rs62199578	A	C	793.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.617;ClippingRankSum=0.000;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.70;MQRankSum=-1.706;QD=6.30;ReadPosRankSum=1.129;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:88,38:0.30:126
chr20	29630582	rs113392373	A	G	3271.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:210,151:0.42:361
chr20	29632519	rs76216438	GA	G	416.73	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:69,23:0.25:92
chr20	29632543	rs9647042	T	C	249.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.318;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=8.710;MLEAC=1;MLEAF=0.500;MQ=51.98;MQRankSum=-4.411;QD=1.60;ReadPosRankSum=-2.390;SOR=1.715;set=HC	GT:AD:AF:DP	0/1:131,25:0.16:156
chr20	29632564	rs2379677	G	A	8354.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,271:1.00:271
chr20	29632593	rs112146379	A	G	2208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.310;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.59;MQRankSum=2.736;QD=4.14;ReadPosRankSum=-1.531;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:387,146:0.27:533
chr20	29632638	rs9647043	C	A	1588.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.112;ClippingRankSum=0.000;DB;DP=890;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.39;MQRankSum=5.121;QD=1.79;ReadPosRankSum=1.209;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:721,167:0.19:888
chr20	29632662	rs1803594	G	C	197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.205;ClippingRankSum=0.000;DB;DP=949;ExcessHet=3.0103;FS=6.454;MLEAC=1;MLEAF=0.500;MQ=54.56;MQRankSum=-14.331;QD=0.21;ReadPosRankSum=4.013;SOR=1.542;set=HC	GT:AD:AF:DP	0/1:850,97:0.10:947
chr20	29632674	rs138867112	T	TA	1625.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.331;ClippingRankSum=0.000;DB;DP=919;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=54.74;MQRankSum=7.359;QD=1.83;ReadPosRankSum=0.652;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:723,165:0.19:888
chr20	29632709	rs78816635	C	T	7597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650;ClippingRankSum=0.000;DB;DP=730;ExcessHet=3.0103;FS=1.209;MLEAC=1;MLEAF=0.500;MQ=54.76;MQRankSum=-1.705;QD=10.44;ReadPosRankSum=0.529;SOR=0.581;set=HC	GT:AD:AF:DP	0/1:500,228:0.31:728
chr20	29632714	rs76788819	CT	AG	7571.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=54.71;MQRankSum=-3.046;QD=11.20;ReadPosRankSum=0.277;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:467,209:0.31:676
chr20	29632726	rs138922778	CTATT	C	5076.73	.	AC=1;AF=0.500;AN=2;DB;DP=572;set=Intersection	GT:AD:AF:DP	0/1:361,159:0.31:520
chr20	29632761	rs6057390	T	C	5907.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:74,241:0.77:315
chr20	29633761	rs147786780	A	T	51.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:18,4:0.18:22
chr20	29633770	rs73621653	T	TAA	274.73	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chr20	29633794	rs10084493	C	A	651.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr20	29633823	rs77782557	A	G	402.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.352;ClippingRankSum=0.000;DB;DP=107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.89;MQRankSum=-1.612;QD=3.76;ReadPosRankSum=0.935;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:79,28:0.26:107
chr20	29633861	rs80250025	A	T	235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.664;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=6.616;MLEAC=1;MLEAF=0.500;MQ=54.83;MQRankSum=-4.226;QD=1.27;ReadPosRankSum=1.439;SOR=1.393;set=HC	GT:AD:AF:DP	0/1:156,30:0.16:186
chr20	29633915	rs78740969	C	T	1087.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=5.601;MLEAC=1;MLEAF=0.500;MQ=55.14;MQRankSum=-7.646;QD=3.40;ReadPosRankSum=1.221;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:272,48:0.15:320
chr20	29633916	rs2554494	G	T	2072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292;ClippingRankSum=0.000;DB;DP=325;ExcessHet=3.0103;FS=7.800;MLEAC=1;MLEAF=0.500;MQ=55.25;MQRankSum=-3.615;QD=7.10;ReadPosRankSum=1.807;SOR=0.807;set=HC	GT:AD:AF:DP	0/1:220,72:0.25:292
chr20	29633927	rs62196372	C	A	1982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.468;ClippingRankSum=0.000;DB;DP=328;ExcessHet=3.0103;FS=9.880;MLEAC=1;MLEAF=0.500;MQ=55.42;MQRankSum=-2.731;QD=6.05;ReadPosRankSum=0.958;SOR=1.032;set=HC	GT:AD:AF:DP	0/1:260,68:0.21:328
chr20	29633929	rs7509092	A	G	2018.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;ClippingRankSum=0.000;DB;DP=332;ExcessHet=3.0103;FS=9.963;MLEAC=1;MLEAF=0.500;MQ=55.41;MQRankSum=-2.839;QD=6.08;ReadPosRankSum=0.894;SOR=1.096;set=HC	GT:AD:AF:DP	0/1:265,67:0.20:332
chr20	29633938	rs61041024	A	G	1044.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=55.23;MQRankSum=-9.038;QD=3.07;ReadPosRankSum=0.575;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:289,51:0.15:340
chr20	29633952	rs62196374	C	T	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.966;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=7.289;MLEAC=1;MLEAF=0.500;MQ=55.06;MQRankSum=-3.630;QD=4.12;ReadPosRankSum=-2.093;SOR=1.191;set=HC	GT:AD:AF:DP	0/1:264,57:0.18:321
chr20	29633966	rs201513813	GTT	G	3381.73	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:112,125:0.53:237
chr20	29633986	rs2379676	A	C	612.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.649;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=13.397;MLEAC=1;MLEAF=0.500;MQ=54.32;MQRankSum=-6.560;QD=2.38;ReadPosRankSum=-0.967;SOR=1.832;set=HC	GT:AD:AF:DP	0/1:228,29:0.11:257
chr20	29634002	rs371593782	C	A	143.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.002;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=9.412;MLEAC=1;MLEAF=0.500;MQ=54.57;MQRankSum=-7.349;QD=0.65;ReadPosRankSum=1.232;SOR=1.504;set=HC	GT:AD:AF:DP	0/1:192,30:0.14:222
chr20	29634037	rs4006816	G	A	1328.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:74,54:0.42:128
chr20	29634049	rs2379675	G	C	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:61,41:0.40:102
chr20	29634102	rs113531250	TC	T	131.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:22,6:0.21:28
chr20	29634104	rs56780525	C	T	140.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.618;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=56.19;MQRankSum=-4.742;QD=5.21;ReadPosRankSum=-2.076;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:21,6:0.22:27
chr20	29652005	.	A	G	301.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.950;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=3.434;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-0.272;QD=3.02;ReadPosRankSum=0.867;SOR=1.275;set=HC	GT:AD:AF:DP	0/1:81,19:0.19:100
chr20	29652010	rs78663325	C	T	919.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.228;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=2.737;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-1.104;QD=8.60;ReadPosRankSum=1.477;SOR=1.156;set=HC	GT:AD:AF:DP	0/1:69,38:0.36:107
chr20	29652165	rs62206783	C	T	1367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=933;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.52;MQRankSum=0.569;QD=1.49;ReadPosRankSum=-1.711;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:824,95:0.10:919
chr20	29652172	rs78862124	T	C	27218.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.673;ClippingRankSum=0.000;DB;DP=920;ExcessHet=3.0103;FS=0.621;MLEAC=1;MLEAF=0.500;MQ=59.38;MQRankSum=-4.456;QD=30.11;ReadPosRankSum=0.749;SOR=0.778;set=HC	GT:AD:AF:DP	0/1:211,693:0.77:904
chr20	29652172	.	TGGAGTGCCTCGGCAGCCT	CGGAGTGCCTCGGCAGCCT,CGGAGTGCCTTGGCAGCCG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.14;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=48;MMLQ=23;MQ=59.29;NF=496,73;NR=505,75;PP=2962,2934;QD=20;SC=AGGCGACCCATGGAGTGCCTC;SbPval=0.52;Source=Platypus;TC=1216;TCF=602;TCR=614;TR=1001,148;WE=29652204;WS=29652156;set=Platypus	GT:AF:DP	0/1:0.82:1216
chr20	29652173	rs79057885	G	A	3344.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DB;DP=923;ExcessHet=3.0103;FS=0.753;MLEAC=1;MLEAF=0.500;MQ=59.36;MQRankSum=1.572;QD=3.67;ReadPosRankSum=0.327;SOR=0.605;set=HC	GT:AD:AF:DP	0/1:776,136:0.15:912
chr20	29652182	rs36076351	C	T	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;ClippingRankSum=0.000;DB;DP=895;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.28;MQRankSum=-5.123;QD=0.08;ReadPosRankSum=1.074;SOR=0.888;set=HC	GT:AD:AF:DP	0/1:824,64:0.07:888
chr20	29652190	rs76344754	T	G	141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=848;ExcessHet=3.0103;FS=1.105;MLEAC=1;MLEAF=0.500;MQ=59.18;MQRankSum=-4.744;QD=0.17;ReadPosRankSum=2.627;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:779,62:0.07:841
chr20	29652191	rs62206784	C	T	23211.77	.	AC=1;AF=0.500;AN=2;DB;DP=842;set=Intersection	GT:AD:AF:DP	0/1:259,576:0.69:835
chr20	29652194	rs34913243	C	T	5365.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239;ClippingRankSum=0.000;DB;DP=817;ExcessHet=3.0103;FS=1.201;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=4.740;QD=6.62;ReadPosRankSum=-5.619;SOR=0.610;set=HC	GT:AD:AF:DP	0/1:563,247:0.30:810
chr20	29652196	rs62206785	T	C	2090.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;ClippingRankSum=0.000;DB;DP=809;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.08;MQRankSum=-8.237;QD=2.61;ReadPosRankSum=1.452;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:629,172:0.21:801
chr20	29652235	rs79475704	C	G	878.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863;ClippingRankSum=0.000;DB;DP=562;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.26;MQRankSum=1.868;QD=1.66;ReadPosRankSum=-1.589;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:436,94:0.18:530
chr20	29652236	rs62206786	G	C	8969.77	.	AC=1;AF=0.500;AN=2;DB;DP=549;set=Intersection	GT:AD:AF:DP	0/1:209,308:0.60:517
chr20	29652260	rs77655567	C	T	319.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831;ClippingRankSum=0.000;DB;DP=377;ExcessHet=3.0103;FS=3.688;MLEAC=1;MLEAF=0.500;MQ=57.02;MQRankSum=-3.401;QD=0.85;ReadPosRankSum=0.121;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:322,53:0.14:375
chr20	29652302	rs74429828	A	G	914.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;ClippingRankSum=0.000;DB;DP=189;ExcessHet=3.0103;FS=3.105;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=1.582;QD=4.84;ReadPosRankSum=-0.592;SOR=0.393;set=HC	GT:AD:AF:DP	0/1:139,50:0.26:189
chr20	29652303	rs62206787	T	C	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:40,118:0.75:158
chr20	29847211	rs6088879	T	C	79.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:13,6:0.32:19
chr20	29966275	rs2223527	G	A	5700.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:93,255:0.73:348
chr20	29966362	rs2206383	A	C	1285.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:21,46:0.69:67
chr20	29978212	rs73108009	G	C	5618.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.497;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.88;ReadPosRankSum=1.711;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:69,140:0.67:209
chr20	29978216	rs2206381	T	C	5640.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.86;ReadPosRankSum=0.847;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:69,141:0.67:210
chr20	30038038	rs45520534	T	C	1055.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:5,36:0.88:41
chr20	30053255	rs6059440	G	A	3846.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:28,172:0.86:200
chr20	30060720	rs111402081	G	GCA	11672.73	.	AC=1;AF=0.500;AN=2;DB;DP=719;set=Intersection	GT:AD:AF:DP	0/1:215,405:0.65:620
chr20	30060740	.	A	ACC	2328	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5000;HP=1;HapScore=1;MGOF=10;MMLQ=25;MQ=60.15;NF=33;NR=134;PP=2328;QD=13.9760479042;SC=ACACACACACATGCACACGAT;SbPval=0.74;Source=Platypus;TC=377;TCF=87;TCR=290;TR=167;WE=30060748;WS=30060730;set=Platypus	GT:AD:AF:DP	1/0:210,167:0.44:377
chr20	30064331	rs1006459	A	G	34872.77	.	AC=1;AF=0.500;AN=2;DB;DP=1942;set=Intersection	GT:AD:AF:DP	0/1:379,1557:0.80:1936
chr20	30115140	.	C	CA	786.73	.	AC=1;AF=0.500;AN=2;DP=84;set=Intersection	GT:AD:AF:DP	0/1:29,54:0.65:83
chr20	30142484	.	C	CA	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.73;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.174;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:84,19:0.18:103
chr20	30142532	rs34318308	C	A	412.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917;ClippingRankSum=0.000;DB;DP=212;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=59.86;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.551;SOR=0.565;set=HC	GT:AD:AF:DP	0/1:170,40:0.19:210
chr20	30156903	rs11376444	G	GT	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=1.905;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=3.508;QD=0.78;ReadPosRankSum=-0.402;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:109,27:0.20:136
chr20	30449181	rs12569	G	A	4599.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:34,203:0.86:237
chr20	30449325	rs947310	C	G	2666.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:28,114:0.80:142
chr20	30449516	rs11417441	G	GC	445.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.28;QD=31.84;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr20	30452782	rs4911536	C	T	13796.77	.	AC=1;AF=0.500;AN=2;DB;DP=791;set=Intersection	GT:AD:AF:DP	0/1:157,624:0.80:781
chr20	30474843	rs41287080	C	G	6780.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:58,277:0.83:335
chr20	30527065	rs6061043	T	C	13087.77	.	AC=1;AF=0.500;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	0/1:162,582:0.78:744
chr20	30530939	rs6058498	C	T	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:11,69:0.86:80
chr20	30605976	.	AGGGGGCGGGGGCGGGGGAGGGGC	A	420.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.518;ClippingRankSum=0.000;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.92;MQRankSum=0.381;QD=35.06;ReadPosRankSum=0.290;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:1,11:0.92:12
chr20	30606690	.	C	CG	175.74	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr20	30618787	rs6061112	T	C	6751.77	.	AC=1;AF=0.500;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	0/1:101,298:0.75:399
chr20	30661130	rs34513177	T	C	5663.77	.	AC=1;AF=0.500;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	0/1:60,246:0.80:306
chr20	30661297	rs2297304	G	A	2534.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:17,106:0.86:123
chr20	30671875	rs242607	C	T	414.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=176;ExcessHet=3.0103;FS=2.468;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.023;SOR=0.950;set=HC	GT:AD:AF:DP	0/1:137,36:0.21:173
chr20	30681999	rs6121337	T	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:28,13:0.32:41
chr20	30689092	rs76379542	C	T	538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.121;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=1.335;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:95,32:0.25:127
chr20	30729488	rs6089193	T	C	15840.77	.	AC=1;AF=0.500;AN=2;DB;DP=843;set=Intersection	GT:AD:AF:DP	0/1:158,683:0.81:841
chr20	30742996	rs1205843	G	T	1113.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.949;ClippingRankSum=0.000;DB;DP=451;ExcessHet=3.0103;FS=0.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.48;ReadPosRankSum=-0.529;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:355,95:0.21:450
chr20	30746248	rs6061195	T	C	4425.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:46,204:0.82:250
chr20	30747679	rs4911553	C	T	1629.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:21,65:0.76:86
chr20	30753270	rs14316	T	C	5842.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:53,246:0.82:299
chr20	30777800	rs11907716	T	C	8391.77	.	AC=1;AF=0.500;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	0/1:126,388:0.75:514
chr20	30777860	rs11907235	A	G	4234.77	.	AC=1;AF=0.500;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	0/1:57,186:0.77:243
chr20	30795819	rs1923095	T	C	15160.77	.	AC=1;AF=0.500;AN=2;DB;DP=851;set=Intersection	GT:AD:AF:DP	0/1:172,678:0.80:850
chr20	30914706	rs3746606	C	T	1541.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:11,64:0.85:75
chr20	30954295	rs2295454	A	G	8097.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:123,371:0.75:494
chr20	30959704	rs2424879	A	G	349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.463;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.456;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:205,44:0.18:249
chr20	31016314	rs3818190	A	G	931.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:7,37:0.84:44
chr20	31019024	rs2295765	C	T	17552.77	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,651:1.00:651
chr20	31022959	rs6058694	T	C	10300.77	.	AC=2;AF=1.00;AN=2;DB;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr20	31024274	rs4911231	T	C	8175.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:91,346:0.79:437
chr20	31025163	rs2295764	A	G	4236.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:42,185:0.81:227
chr20	31025231	rs2295763	T	C	1248.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:22,47:0.68:69
chr20	31035206	.	C	CAA	106.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;ClippingRankSum=-0.000;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=-0.000;QD=8.21;ReadPosRankSum=-0.564;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,8:0.62:13
chr20	31097852	.	C	A	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118;ClippingRankSum=0.000;DP=37;ExcessHet=3.0103;FS=6.134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.67;ReadPosRankSum=-0.107;SOR=2.517;set=HC	GT:AD:AF:DP	0/1:9,28:0.76:37
chr20	31097860	rs293565	A	G	978.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.375;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=5.948;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=30.59;ReadPosRankSum=-0.420;SOR=2.468;set=HC	GT:AD:AF:DP	0/1:8,24:0.75:32
chr20	31097877	rs293566	T	C	459.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:5,16:0.76:21
chr20	31099311	rs159428	T	C	2317.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:20,106:0.84:126
chr20	31189411	rs2029086	A	G	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:61,23:0.27:84
chr20	31196471	rs8114375	A	G	28816.77	.	AC=1;AF=0.500;AN=2;DB;DP=1642;set=Intersection	GT:AD:AF:DP	0/1:340,1296:0.79:1636
chr20	31238627	rs7272020	C	T	15099.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,560:1.00:560
chr20	31291161	rs9421	C	T	3305.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	31292298	rs59379723	CA	C	896.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.005;ClippingRankSum=0.000;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=0.842;QD=8.54;ReadPosRankSum=-1.519;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:31,74:0.70:105
chr20	31294655	rs28548540	A	G	1921.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,66:0.99:67
chr20	31384735	rs192769774	C	T	25371.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117;ClippingRankSum=0.000;DB;DP=1382;ExcessHet=3.0103;FS=1.420;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.39;ReadPosRankSum=0.977;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:276,1104:0.80:1380
chr20	31466347	rs13037174	C	T	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.10;QD=45.40;SOR=1.378;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	31466364	rs13037187	C	T	2456.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr20	31466387	rs13037762	A	G	2645.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	31466534	rs13037496	C	T	10711.77	.	AC=2;AF=1.00;AN=2;DB;DP=415;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chr20	31473483	rs6119300	G	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr20	31480938	rs2377733	C	T	12104.77	.	AC=2;AF=1.00;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr20	31480961	rs2377734	C	T	15351.77	.	AC=2;AF=1.00;AN=2;DB;DP=574;set=Intersection	GT:AD:AF:DP	1/1:0,572:1.00:572
chr20	31484417	rs11167186	T	A	14599.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr20	31486206	rs6058948	A	G	3054.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	31494382	rs6120033	G	A	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr20	31495977	rs17370942	C	T	5742.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr20	31505189	rs13043425	C	T	2842.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;ClippingRankSum=0.000;DB;DP=1006;ExcessHet=3.0103;FS=1.395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.314;SOR=0.561;set=HC	GT:AD:AF:DP	0/1:786,218:0.22:1004
chr20	31505292	rs13037781	C	T	38316.77	.	AC=2;AF=1.00;AN=2;DB;DP=1421;set=Intersection	GT:AD:AF:DP	1/1:0,1417:1.00:1417
chr20	31518298	rs6058961	A	G	9907.77	.	AC=2;AF=1.00;AN=2;DB;DP=379;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.877;set=HC	GT:AD:AF:DP	1/1:0,376:1.00:376
chr20	31549424	rs11167189	G	A	9142.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,317:1.00:317
chr20	31571485	rs6087436	C	T	2119.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	31573528	rs2274343	A	C	5453.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr20	31573769	rs13040459	T	G	3169.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr20	31585508	rs41301833	G	T	6039.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=359;ExcessHet=3.0103;FS=0.449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.87;ReadPosRankSum=1.443;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:86,272:0.76:358
chr20	31590388	rs149206379	C	T	1781.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=958;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.730;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:775,177:0.19:952
chr20	31590530	rs41305793	T	G	7285.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr20	31590922	rs139039302	G	T	306.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,12:0.71:17
chr20	31592242	rs6088062	C	T	4154.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	31596472	rs6088066	A	T	13099.77	.	AC=2;AF=1.00;AN=2;DB;DP=497;set=Intersection	GT:AD:AF:DP	1/1:0,497:1.00:497
chr20	31607654	rs45626037	T	C	1083.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.004;ClippingRankSum=0.000;DB;DP=520;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.08;ReadPosRankSum=-2.705;SOR=0.706;set=HC	GT:AD:AF:DP	0/1:421,99:0.19:520
chr20	31608250	rs6057703	C	A	1021.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.164;ClippingRankSum=0.000;DB;DP=681;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.50;ReadPosRankSum=-0.684;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:567,113:0.17:680
chr20	31609246	rs62207506	G	A	742.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.092;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.55;ReadPosRankSum=0.653;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:158,51:0.24:209
chr20	31609433	rs13043556	T	C	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.790;SOR=0.523;set=HC	GT:AD:AF:DP	0/1:122,21:0.15:143
chr20	31609581	rs17124003	C	T	651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.181;ClippingRankSum=0.000;DB;DP=635;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=0.494;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:535,99:0.16:634
chr20	31619357	rs4911286	C	T	1197.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr20	31619578	rs6059027	A	G	12036.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr20	31619724	rs2070312	A	T	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	31621564	rs2070315	C	T	4791.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr20	31621583	rs2070316	G	A	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	31622083	rs2070317	G	A	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr20	31622768	rs6059032	C	A	37262.77	.	AC=2;AF=1.00;AN=2;DB;DP=1387;set=Intersection	GT:AD:AF:DP	1/1:0,1382:1.00:1382
chr20	31622839	rs6059033	T	C	46065.77	.	AC=2;AF=1.00;AN=2;DB;DP=1766;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.19;SOR=0.729;set=HC	GT:AD:AF:DP	1/1:0,1759:1.00:1759
chr20	31624368	rs6059035	C	T	23164.77	.	AC=2;AF=1.00;AN=2;DB;DP=891;set=Intersection	GT:AD:AF:DP	1/1:1,881:1.00:882
chr20	31626558	rs6088078	G	C	2781.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	31626621	rs6057708	C	T	9023.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr20	31627291	rs4911287	A	G	3749.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	31629850	rs181117173	C	T	17156.77	.	AC=1;AF=0.500;AN=2;DB;DP=929;set=Intersection	GT:AD:AF:DP	0/1:182,744:0.80:926
chr20	31629911	rs2070319	G	A	10175.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr20	31643511	rs384430	A	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	31644520	rs408538	T	C	3367.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	31647126	rs6088082	C	T	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr20	31647598	rs6088083	G	C	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.881;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=3.723;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.39;ReadPosRankSum=-0.576;SOR=0.226;set=HC	GT:AD:AF:DP	0/1:74,17:0.19:91
chr20	31647864	rs6088084	C	A	18468.77	.	AC=2;AF=1.00;AN=2;DB;DP=705;set=Intersection	GT:AD:AF:DP	1/1:0,702:1.00:702
chr20	31647935	rs2424936	G	T	6506.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr20	31651375	rs181339678	G	A	11393.77	.	AC=1;AF=0.500;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	0/1:128,497:0.80:625
chr20	31651583	rs403461	A	G	1272.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:1,41:0.98:42
chr20	31652292	rs4911290	G	A	19116.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,729:1.00:729
chr20	31656632	rs6057717	C	G	26830.77	.	AC=2;AF=1.00;AN=2;DB;DP=994;set=Intersection	GT:AD:AF:DP	1/1:2,989:1.00:991
chr20	31656837	rs2424938	G	A	6893.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr20	31673846	rs2070325	A	G	9738.77	.	AC=2;AF=1.00;AN=2;DB;DP=384;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr20	31676622	rs2424949	G	T	5487.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr20	31676804	rs2889732	A	C	28789.77	.	AC=2;AF=1.00;AN=2;DB;DP=1071;set=Intersection	GT:AD:AF:DP	1/1:0,1068:1.00:1068
chr20	31677474	rs7271727	A	G	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.90;SOR=4.659;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr20	31677474	.	AGT	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.16;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=6;NR=79;PP=2947;QD=20;SC=AGGCCCTTGAAGTGAGGAGTG;SbPval=0.49;Source=Platypus;TC=90;TCF=6;TCR=84;TR=85;WE=31677484;WS=31677464;set=Platypus	GT:AD:AF:DP	1/1:5,85:0.94:90
chr20	31677476	rs6057722	T	C	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.23;SOR=4.548;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	31683044	rs12329638	C	T	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:65,29:0.31:94
chr20	31811551	rs725914	C	T	171.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.783;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=2.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=1.236;SOR=0.960;set=HC	GT:AD:AF:DP	0/1:132,22:0.14:154
chr20	31812923	rs3818222	G	A	9456.77	.	AC=2;AF=1.00;AN=2;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.715;set=HC	GT:AD:AF:DP	1/1:0,360:1.00:360
chr20	31825436	rs58831055	A	AG	631.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=-3.188;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:146,35:0.19:181
chr20	31826027	rs6059183	T	C	649.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.509;ClippingRankSum=0.000;DB;DP=291;ExcessHet=3.0103;FS=1.794;MLEAC=1;MLEAF=0.500;MQ=60.41;MQRankSum=6.696;QD=2.23;ReadPosRankSum=2.086;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:232,59:0.20:291
chr20	31826088	rs36225274	GGCAGTGACCCTGAA	G	477.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.186;MLEAC=1;MLEAF=0.500;MQ=60.90;MQRankSum=7.461;QD=4.05;ReadPosRankSum=0.768;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:97,21:0.18:118
chr20	31826130	rs6141898	G	T	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=1.453;MLEAC=1;MLEAF=0.500;MQ=60.82;MQRankSum=4.273;QD=2.81;ReadPosRankSum=-0.292;SOR=1.053;set=HC	GT:AD:AF:DP	0/1:51,15:0.23:66
chr20	31827439	rs6141899	A	G	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.834;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=10.375;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=2.358;SOR=0.075;set=HC	GT:AD:AF:DP	0/1:47,13:0.22:60
chr20	31828254	rs6059186	T	C	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.659;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.56;ReadPosRankSum=-0.898;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:177,40:0.18:217
chr20	31828265	rs6059187	A	G	918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.66;ReadPosRankSum=-0.491;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:162,35:0.18:197
chr20	31828336	.	A	AGATG	1121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.267;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-0.546;QD=33.99;ReadPosRankSum=-1.383;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chr20	31954535	rs111360441	G	A	459.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=1.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.97;ReadPosRankSum=-0.218;SOR=0.462;set=HC	GT:AD:AF:DP	0/1:121,34:0.22:155
chr20	31954819	rs368904466	TA	T	281.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.392;QD=1.06;ReadPosRankSum=-0.422;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:200,67:0.25:267
chr20	31954890	rs291674	C	G	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	31960719	rs11291803	CT	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.479;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.75;ReadPosRankSum=2.608;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:6,19:0.76:25
chr20	31961860	rs291676	T	C	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.631;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=2.938;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.49;ReadPosRankSum=-0.111;SOR=0.143;set=HC	GT:AD:AF:DP	0/1:53,10:0.16:63
chr20	31981849	rs291700	T	C	20556.77	.	AC=2;AF=1.00;AN=2;DB;DP=808;set=Intersection	GT:AD:AF:DP	1/1:0,807:1.00:807
chr20	31984481	rs75837607	C	T	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:1,22:0.96:23
chr20	32000351	rs291694	A	G	4252.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	32077925	rs75667555	C	T	37.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=0.710;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chr20	32162162	.	T	G	2544.77	.	AC=1;AF=0.500;AN=2;DP=138;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr20	32207238	.	T	TA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042;ClippingRankSum=0.000;DP=57;ExcessHet=3.0103;FS=4.308;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.225;QD=5.01;ReadPosRankSum=0.361;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:31,22:0.42:53
chr20	32211760	.	GA	G	157.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.663;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=1.091;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=0.000;QD=1.71;ReadPosRankSum=-0.063;SOR=0.841;set=HC	GT:AD:AF:DP	0/1:66,26:0.28:92
chr20	32212690	rs3803939	C	T	817.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;ClippingRankSum=0.000;DB;DP=375;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.152;SOR=0.614;set=HC	GT:AD:AF:DP	0/1:292,71:0.20:363
chr20	32245546	rs13037669	T	C	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.96;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	32245869	rs3746461	C	G	169.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.123;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=3.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=0.752;SOR=1.336;set=HC	GT:AD:AF:DP	0/1:77,16:0.17:93
chr20	32248281	rs17124895	C	T	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.84;ReadPosRankSum=1.899;SOR=0.635;set=HC	GT:AD:AF:DP	0/1:78,18:0.19:96
chr20	32255233	rs3746459	T	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:25,7:0.22:32
chr20	32264533	rs3213177	C	A	2869.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:31,113:0.78:144
chr20	32295541	rs910397	C	T	746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=3.840;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=1.143;SOR=0.455;set=HC	GT:AD:AF:DP	0/1:170,52:0.23:222
chr20	32319894	rs2281402	C	T	63.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.529;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=-0.390;SOR=0.573;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chr20	32328968	rs6087514	G	T	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=3.087;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-2.069;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:54,14:0.21:68
chr20	32379263	rs2626551	T	C	645.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=0.592;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.84;ReadPosRankSum=1.739;SOR=0.606;set=HC	GT:AD:AF:DP	0/1:177,50:0.22:227
chr20	32664864	rs10649600	C	CCAG	17210.73	.	AC=1;AF=0.500;AN=2;DB;DP=625;set=Intersection	GT:AD:AF:DP	0/1:143,430:0.75:573
chr20	32691516	rs78758853	CT	C	46.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.72;ReadPosRankSum=0.240;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:49,16:0.25:65
chr20	32856998	rs6058017	A	G	2901.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:30,108:0.78:138
chr20	32891200	rs819146	G	T	695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;ClippingRankSum=0.000;DB;DP=496;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.472;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:415,81:0.16:496
chr20	32996689	rs3761147	G	T	617.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=1.638;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=-0.478;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:112,40:0.26:152
chr20	33033065	rs11482470	G	GT	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.651;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.035;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.28;ReadPosRankSum=-0.668;SOR=0.913;set=HC	GT:AD:AF:DP	0/1:35,38:0.52:73
chr20	33033354	rs185069108	G	A	1115.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:22,44:0.67:66
chr20	33037336	rs3736762	C	T	1534.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:20,68:0.77:88
chr20	33053985	rs11480899	A	AT	399.73	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:6,20:0.77:26
chr20	33057954	rs6059856	G	C	12511.77	.	AC=1;AF=0.500;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	0/1:138,533:0.79:671
chr20	33057974	rs10716089	CT	C	11668.73	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:110,384:0.78:494
chr20	33059478	.	GGTGTGT	G	1296.73	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:10,42:0.81:52
chr20	33068563	rs6059861	A	T	1307.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chr20	33104592	rs2424993	G	C	8773.77	.	AC=1;AF=0.500;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	0/1:125,385:0.75:510
chr20	33114290	rs10684716	C	CTT	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.47;ReadPosRankSum=0.217;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:11,12:0.52:23
chr20	33117533	.	C	CA	87.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.264;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=4.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=0.389;SOR=0.499;set=HC	GT:AD:AF:DP	0/1:95,23:0.19:118
chr20	33147332	rs182912977	G	A	2848.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:41,144:0.78:185
chr20	33147737	rs6059915	C	G	4512.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr20	33148861	rs6059916	T	G	5783.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	33150503	rs6059918	C	T	1809.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:19,72:0.79:91
chr20	33169405	rs41290896	C	T	2879.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=3.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.00;ReadPosRankSum=3.185;SOR=0.952;set=HC	GT:AD:AF:DP	0/1:33,127:0.79:160
chr20	33169495	rs11467128	AAGAG	A	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.159;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=1.234;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.53;ReadPosRankSum=-0.135;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:90,11:0.11:101
chr20	33225793	.	G	GA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.448;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=8.336;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.218;QD=1.31;ReadPosRankSum=0.772;SOR=0.163;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chr20	33297810	rs369052205	G	GC	1445.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	33297811	rs2378257	A	C	1454.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	33326876	rs6060025	A	G	3207.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:1,115:0.99:116
chr20	33328420	rs61751051	C	T	9155.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:85,382:0.82:467
chr20	33334540	rs910872	T	C	4156.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr20	33334734	rs11484299	T	TA	138.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.402;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.700;SOR=0.385;set=HC	GT:AD:AF:DP	0/1:35,19:0.35:54
chr20	33337751	rs3787220	T	C	16559.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,629:1.00:629
chr20	33338325	.	T	TA	104.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.467;ClippingRankSum=0.000;DP=105;ExcessHet=3.0103;FS=2.361;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.717;QD=1.22;ReadPosRankSum=-1.258;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chr20	33342439	rs1884432	T	C	1535.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	33342477	rs6087625	G	A	1691.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:34,74:0.69:108
chr20	33346556	rs11468960	ATC	A	2969.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:19,74:0.80:93
chr20	33346832	rs11476500	GT	G	157.52	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.000;QD=7.88;ReadPosRankSum=-0.397;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:7,13:0.65:20
chr20	33356511	rs2295353	C	T	1043.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:10,41:0.80:51
chr20	33364584	rs6060043	C	T	4336.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.81;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr20	33364655	rs6120723	C	T	2102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;ClippingRankSum=0.000;DB;DP=108;ExcessHet=3.0103;FS=5.816;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.47;ReadPosRankSum=0.401;SOR=0.254;set=HC	GT:AD:AF:DP	0/1:14,94:0.87:108
chr20	33370266	rs6060048	T	C	246.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;ClippingRankSum=0.000;DB;DP=109;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.26;ReadPosRankSum=1.214;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:87,22:0.20:109
chr20	33438764	rs142443850	C	G	1669.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:19,64:0.77:83
chr20	33470694	rs4911163	C	T	8935.77	.	AC=1;AF=0.500;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	0/1:85,396:0.82:481
chr20	33496667	.	G	GA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=2.406;QD=1.11;ReadPosRankSum=1.182;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:83,24:0.22:107
chr20	33500245	rs3787214	C	A	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr20	33500378	rs2378294	G	A	2419.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:17,111:0.87:128
chr20	33507379	rs60692848	AGTGT	A	859.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.660;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=0.828;QD=28.66;ReadPosRankSum=0.157;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:4,26:0.87:30
chr20	33509275	rs3818273	G	A	7442.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:71,319:0.82:390
chr20	33509523	rs2273683	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:18,103:0.85:121
chr20	33533736	rs734111	A	C	3912.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:38,176:0.82:214
chr20	33570425	.	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=1.030;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=2.213;QD=0.33;ReadPosRankSum=1.056;SOR=0.469;set=HC	GT:AD:AF:DP	0/1:109,24:0.18:133
chr20	33572941	rs2425007	A	G	14458.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:1,529:1.00:530
chr20	33574022	rs2425008	G	C	6489.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr20	33574765	rs3746446	T	C	25761.77	.	AC=1;AF=0.500;AN=2;DB;DP=1460;set=Intersection	GT:AD:AF:DP	0/1:280,1178:0.81:1458
chr20	33575347	rs3053708	C	CAT	11440.73	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr20	33578251	rs3746444	A	G	8021.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:76,349:0.82:425
chr20	33578899	rs2425009	T	C	11687.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	33581889	rs7268266	T	C	9783.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:76,416:0.85:492
chr20	33581955	rs2425012	G	A	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.862;ClippingRankSum=0.000;DB;DP=922;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=-1.617;SOR=0.619;set=HC	GT:AD:AF:DP	0/1:762,157:0.17:919
chr20	33583033	rs10536288	CAAA	C	716.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr20	33583037	rs61501849	C	G	725.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	33583114	rs2425014	T	C	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	33583331	rs2425015	A	G	15025.77	.	AC=2;AF=1.00;AN=2;DB;DP=561;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr20	33584289	rs3746438	C	T	9079.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chr20	33584822	rs11167250	T	TG	807.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	33584864	rs11167251	C	CT	1829.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	33586193	rs3746436	C	T	13394.77	.	AC=1;AF=0.500;AN=2;DB;DP=736;set=Intersection	GT:AD:AF:DP	0/1:157,578:0.79:735
chr20	33587198	rs3746435	G	C	5132.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:55,213:0.79:268
chr20	33587553	rs369393561	TCC	T	295.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.305;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=5.199;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.00;ReadPosRankSum=-0.743;SOR=1.788;set=HC	GT:AD:AF:DP	0/1:113,35:0.24:148
chr20	33587563	rs200141778	CCA	C	592.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.807;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=11.810;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.12;ReadPosRankSum=-1.048;SOR=0.116;set=HC	GT:AD:AF:DP	0/1:100,44:0.31:144
chr20	33587564	rs201431658	CA	C	205.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.163;ClippingRankSum=0.000;DB;DP=172;ExcessHet=3.0103;FS=9.069;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=2.455;SOR=2.482;set=HC	GT:AD:AF:DP	0/1:117,26:0.18:143
chr20	33588698	rs67885143	TGAGGCTGGGCAAGGGCTGTGGG	T	5565.73	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:41,142:0.78:183
chr20	33589107	rs36003887	G	A	10038.77	.	AC=1;AF=0.500;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	0/1:126,429:0.77:555
chr20	33590096	rs4911167	A	G	4596.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	33591197	rs11481073	A	AG	17556.73	.	AC=2;AF=1.00;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr20	33592248	rs752448	C	T	6604.77	.	AC=1;AF=0.500;AN=2;DB;DP=362;set=Intersection	GT:AD:AF:DP	0/1:75,286:0.79:361
chr20	33592474	rs752449	A	G	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	33593457	rs3746431	T	C	11717.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,436:1.00:436
chr20	33593674	rs3746430	T	C	2590.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	33594226	rs6060151	G	T	7724.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr20	33595300	rs2273636	C	T	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	33600740	rs1885117	C	T	2490.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:27,102:0.79:129
chr20	33604042	rs3736802	T	C	534.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.557;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.641;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.42;ReadPosRankSum=0.517;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:175,46:0.21:221
chr20	33632600	rs3803938	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	33637606	rs2281626	T	G	14941.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,558:1.00:558
chr20	33642732	rs4911462	G	T	6472.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.64;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	33642737	rs4911463	G	A	6575.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.42;SOR=0.814;set=HC	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	33657126	rs1998233	G	A	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.911;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	33680589	.	C	T	6834.77	.	AC=1;AF=0.500;AN=2;DP=390;set=Intersection	GT:AD:AF:DP	0/1:86,303:0.78:389
chr20	33706187	rs6088722	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=6.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.077;SOR=0.080;set=HC	GT:AD:AF:DP	0/1:39,9:0.19:48
chr20	33711624	rs6120838	T	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=0.434;SOR=0.074;set=HC	GT:AD:AF:DP	0/1:26,6:0.19:32
chr20	33713963	rs2295885	T	C	66.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:18,5:0.22:23
chr20	33713975	rs2295886	A	C	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:23,5:0.18:28
chr20	33714187	rs2295887	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=1.849;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=2.098;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:112,23:0.17:135
chr20	33719400	rs56289894	G	A	8470.77	.	AC=1;AF=0.500;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	0/1:114,372:0.77:486
chr20	33730387	rs6120849	C	T	2632.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:24,96:0.80:120
chr20	33734905	rs945959	G	C	8679.77	.	AC=1;AF=0.500;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	0/1:119,397:0.77:516
chr20	33762489	rs2069948	C	T	15635.77	.	AC=1;AF=0.500;AN=2;DB;DP=834;set=Intersection	GT:AD:AF:DP	0/1:149,681:0.82:830
chr20	33763951	rs2069952	C	T	8214.77	.	AC=1;AF=0.500;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	0/1:106,364:0.77:470
chr20	33764355	.	TG	T	1676.73	.	AC=1;AF=0.500;AN=2;DP=90;set=Intersection	GT:AD:AF:DP	0/1:25,61:0.71:86
chr20	33764632	rs9574	C	G	2164.77	.	AC=1;AF=0.500;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	0/1:38,97:0.72:135
chr20	33834708	rs3764733	G	A	7106.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:77,312:0.80:389
chr20	33867697	rs619865	A	G	6052.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr20	33874877	.	CAG	C	1883.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687;ClippingRankSum=0.000;DP=269;ExcessHet=3.0103;FS=3.298;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=3.617;QD=7.19;ReadPosRankSum=2.051;SOR=0.951;set=HC	GT:AD:AF:DP	0/1:200,62:0.24:262
chr20	33875233	.	C	G	720.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;ClippingRankSum=0.000;DP=584;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=0.304;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:485,93:0.16:578
chr20	33894463	rs878639	A	G	4687.77	.	AC=1;AF=0.500;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	0/1:56,215:0.79:271
chr20	33954245	rs41311300	T	G	2760.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:27,113:0.81:140
chr20	33971914	rs4911494	C	T	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;ClippingRankSum=0.000;DB;DP=514;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.18;ReadPosRankSum=1.104;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:431,82:0.16:513
chr20	33972053	rs4911496	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.971;ClippingRankSum=0.000;DB;DP=191;ExcessHet=3.0103;FS=7.153;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.310;SOR=0.298;set=HC	GT:AD:AF:DP	0/1:149,41:0.22:190
chr20	33972451	.	T	TA	248.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;ClippingRankSum=0.000;DP=109;ExcessHet=3.0103;FS=1.008;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=3.171;QD=2.73;ReadPosRankSum=-1.320;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:61,30:0.33:91
chr20	33974163	rs6088812	T	A	36.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.854;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=1.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=0.607;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:67,12:0.15:79
chr20	33997275	rs113465935	GA	G	437.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=1.207;QD=10.94;ReadPosRankSum=2.237;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:7,33:0.82:40
chr20	34022387	rs224331	A	C	8864.77	.	AC=1;AF=0.500;AN=2;DB;DP=481;set=Intersection	GT:AD:AF:DP	0/1:110,370:0.77:480
chr20	34025756	rs143384	A	G	1834.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:17,74:0.81:91
chr20	34054609	rs224354	G	C	503.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,20:0.71:28
chr20	34054729	rs2296402	T	C	3482.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:49,154:0.76:203
chr20	34055453	rs5841213	AG	A	1746.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:19,63:0.77:82
chr20	34061578	rs224361	T	C	1651.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:18,67:0.79:85
chr20	34062642	rs224362	C	T	3903.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=1.464;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.68;ReadPosRankSum=0.834;SOR=0.538;set=HC	GT:AD:AF:DP	0/1:36,173:0.83:209
chr20	34062710	rs224363	C	T	4172.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:50,185:0.79:235
chr20	34079200	rs224373	A	G	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr20	34090519	rs3748433	G	A	6575.77	.	AC=1;AF=0.500;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	0/1:68,270:0.80:338
chr20	34096725	rs2236165	A	G	2276.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:16,82:0.84:98
chr20	34099165	rs72173955	CT	C	529.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;ClippingRankSum=0.000;DB;DP=439;ExcessHet=3.0103;FS=1.594;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.462;QD=1.31;ReadPosRankSum=-1.221;SOR=0.584;set=HC	GT:AD:AF:DP	0/1:300,103:0.26:403
chr20	34116282	rs7261862	T	C	8087.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:76,349:0.82:425
chr20	34131396	rs12481365	C	T	13274.77	.	AC=1;AF=0.500;AN=2;DB;DP=697;set=Intersection	GT:AD:AF:DP	0/1:116,578:0.83:694
chr20	34136791	rs45563939	C	T	3593.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:59,153:0.72:212
chr20	34142257	rs60267524	C	T	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:6,63:0.91:69
chr20	34142287	rs17092784	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:6,32:0.84:38
chr20	34142670	rs73283830	T	G	1280.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:14,57:0.80:71
chr20	34144107	rs224420	T	C	7906.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	34147998	rs224424	A	G	18069.77	.	AC=1;AF=0.500;AN=2;DB;DP=1024;set=Intersection	GT:AD:AF:DP	0/1:205,819:0.80:1024
chr20	34148488	rs8115363	G	A	3240.77	.	AC=1;AF=0.500;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	0/1:31,127:0.80:158
chr20	34152782	rs2277862	C	T	1512.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,63:0.81:78
chr20	34153341	rs224430	C	T	500.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:4,19:0.83:23
chr20	34164422	rs1557202	T	C	16214.77	.	AC=2;AF=1.00;AN=2;DB;DP=599;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr20	34167382	rs8116470	G	A	6750.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:73,264:0.78:337
chr20	34170035	rs6060486	C	G	21577.77	.	AC=2;AF=1.00;AN=2;DB;DP=822;set=Intersection	GT:AD:AF:DP	1/1:0,820:1.00:820
chr20	34170174	rs6119628	C	A	743.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151;ClippingRankSum=0.000;DB;DP=570;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.31;ReadPosRankSum=-0.072;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:473,96:0.17:569
chr20	34170316	rs6060487	C	A	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	34171324	rs6088887	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:16,52:0.76:68
chr20	34173046	rs1536147	C	T	2637.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.828;ClippingRankSum=0.000;DB;DP=1653;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.60;ReadPosRankSum=1.553;SOR=0.723;set=HC	GT:AD:AF:DP	0/1:1365,285:0.17:1650
chr20	34173178	rs6060488	A	G	1638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;ClippingRankSum=0.000;DB;DP=910;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=-0.012;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:742,165:0.18:907
chr20	34208516	rs2425067	C	T	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	34247060	.	C	CA	375.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153;ClippingRankSum=0.000;DP=275;ExcessHet=3.0103;FS=4.450;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=3.045;QD=1.89;ReadPosRankSum=-0.398;SOR=0.410;set=HC	GT:AD:AF:DP	0/1:148,51:0.26:199
chr20	34280321	.	TAA	T	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.04;ReadPosRankSum=0.738;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chr20	34294949	.	TAA	T	32.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.366;ClippingRankSum=-0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.98;ReadPosRankSum=-1.133;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:7,4:0.36:11
chr20	34320202	rs11479445	TA	T	361.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=2.399;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=0.632;QD=11.30;ReadPosRankSum=-0.486;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:5,27:0.84:32
chr20	34328274	rs1538426	G	A	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	34582947	rs76775934	T	G	8238.77	.	AC=1;AF=0.500;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	0/1:83,376:0.82:459
chr20	34776503	.	AACAC	A	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=-0.000;DP=54;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-0.000;QD=29.32;ReadPosRankSum=0.120;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:3,12:0.80:15
chr20	34776561	.	CACAG	C	707	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=3;MGOF=33;MMLQ=25;MQ=53.22;NF=3;NR=15;PP=707;QD=39.4444444444;SC=CACACACACACACAGAGAGAG;SbPval=0.8;Source=Platypus;TC=52;TCF=12;TCR=40;TR=18;WE=34776574;WS=34776551;set=Platypus	GT:AD:AF:DP	0/1:34,18:0.35:52
chr20	34858360	rs2425206	T	C	859.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chr20	35064912	rs1275393	G	A	3369.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	35068018	rs1275396	A	G	2049.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	35090820	rs1275391	C	G	10644.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr20	35127975	rs201631021	G	A	1594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;ClippingRankSum=0.000;DB;DP=461;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.50;ReadPosRankSum=0.664;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:342,113:0.25:455
chr20	35288971	rs6028627	A	T	235.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.333;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=1.957;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=1.315;QD=10.72;ReadPosRankSum=-0.441;SOR=0.956;set=HC	GT:AD:AF:DP	0/1:9,13:0.59:22
chr20	35422960	rs41276994	G	A	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=0.036;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:313,99:0.24:412
chr20	35423172	.	C	CT	115.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=-0.915;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:65,20:0.24:85
chr20	35436758	.	G	GA	133.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.66;MQRankSum=2.974;QD=1.86;ReadPosRankSum=-2.359;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:51,21:0.29:72
chr20	35445890	rs368000406	TA	T	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.074;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.47;ReadPosRankSum=-2.628;SOR=0.801;set=HC	GT:AD:AF:DP	0/1:63,19:0.23:82
chr20	35491551	rs6029806	A	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	35508959	rs1291125	T	C	4638.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr20	35559352	rs6072746	A	C	7929.77	.	AC=2;AF=1.00;AN=2;DB;DP=310;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr20	35661007	rs77052854	T	C	134.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.529;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=2.145;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.36;ReadPosRankSum=-0.800;SOR=0.204;set=HC	GT:AD:AF:DP	0/1:46,11:0.19:57
chr20	35672436	.	G	GT	337.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=0.904;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=2.568;QD=3.04;ReadPosRankSum=-0.643;SOR=0.509;set=HC	GT:AD:AF:DP	0/1:72,39:0.35:111
chr20	35695535	rs371434822	GA	G	469.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.44;MQRankSum=3.852;QD=2.90;ReadPosRankSum=-1.332;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:97,65:0.40:162
chr20	35710453	rs1892205	T	C	340.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:54,21:0.28:75
chr20	35738841	rs1744759	G	C	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr20	35740794	rs1744760	T	C	9356.77	.	AC=1;AF=0.500;AN=2;DB;DP=587;set=Intersection	GT:AD:AF:DP	0/1:154,432:0.74:586
chr20	35748024	rs1780670	G	A	1308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.220;ClippingRankSum=0.000;DB;DP=81;ExcessHet=3.0103;FS=6.155;MLEAC=1;MLEAF=0.500;MQ=60.06;MQRankSum=0.019;QD=16.36;ReadPosRankSum=0.177;SOR=1.593;set=HC	GT:AD:AF:DP	0/1:25,55:0.69:80
chr20	35748039	rs138010782	G	GAAAGA,GAAAGAAAAGAAAAGAAAAGA	5779.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=57.97;QD=46.24;SOR=2.284;set=HC	GT:AD:AF:DP	1/2:0,38,87:0.30,0.70:125
chr20	35748894	rs1624888	C	G	9809.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr20	35749079	rs8120336	T	A	98.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.819;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=3.082;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=1.190;SOR=1.234;set=HC	GT:AD:AF:DP	0/1:67,11:0.14:78
chr20	35766337	rs8115854	A	G	1006.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;ClippingRankSum=0.000;DB;DP=339;ExcessHet=3.0103;FS=1.004;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=1.437;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:262,76:0.22:338
chr20	35769592	rs1744769	T	C	8903.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr20	35769647	rs1780680	G	T	4875.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:64,217:0.77:281
chr20	35783494	rs1615246	T	C	4786.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:64,213:0.77:277
chr20	35786188	rs1780687	A	C	4000.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr20	35787473	rs1744775	A	G	4720.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:71,206:0.74:277
chr20	35788405	rs11086937	CAA	C	267.50	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.697;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=0.744;QD=12.74;ReadPosRankSum=-1.482;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:8,13:0.62:21
chr20	35796541	rs62621241	T	C	1225.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=0.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=-1.314;SOR=0.611;set=HC	GT:AD:AF:DP	0/1:242,85:0.26:327
chr20	35807790	rs11467214	G	GCTTATAGACAGGGCCCCGCGGCCGGCACT	3575.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	35812526	rs16986470	C	A	971.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.973;ClippingRankSum=0.000;DB;DP=351;ExcessHet=3.0103;FS=6.053;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-2.926;SOR=1.050;set=HC	GT:AD:AF:DP	0/1:269,81:0.23:350
chr20	35826683	rs2076399	T	G	1918.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:14,73:0.84:87
chr20	35827028	rs146714866	A	ATT	638.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.77;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	35827682	rs2076398	G	T	953.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	35828696	rs6032013	A	G	1374.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	35828757	.	ATT	A	2717.73	.	AC=2;AF=1.00;AN=2;DP=105;set=Intersection	GT:AD:AF:DP	1/1:5,95:0.95:100
chr20	35835657	rs11698281	C	T	4342.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr20	35835889	rs1079657	A	G	10699.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr20	35838372	rs2272950	T	A	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr20	35838591	rs2050091	T	C	7015.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr20	35838756	rs3817885	G	A	723.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	35852395	rs2076397	A	C	6183.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	35852450	rs2076396	G	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	35865054	rs4608	C	T	11886.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,443:1.00:443
chr20	35869538	rs77501105	A	G	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=-0.684;SOR=0.866;set=HC	GT:AD:AF:DP	0/1:30,6:0.17:36
chr20	35869619	rs2050093	C	T	4116.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr20	36022154	rs6018256	T	C	1523.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:20,55:0.73:75
chr20	36022539	rs6018257	T	C	6195.77	.	AC=1;AF=0.500;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	0/1:68,255:0.79:323
chr20	36030939	rs1885257	G	C	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr20	36031097	rs2145792	A	G	10637.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:2,393:0.99:395
chr20	36150582	rs149299117	C	CA	103.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=7.104;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.839;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr20	36150591	rs34619095	A	AT	345.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.211;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=16.217;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=-0.767;SOR=4.174;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr20	36150600	rs5841264	T	TA	1172.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.29;QD=31.70;SOR=2.494;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	36375071	rs2297154	T	C	1284.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:76,64:0.46:140
chr20	36488508	rs3833308	TCTCA	T	3910.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	36488911	rs1474623	G	T	381.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	36561844	rs6126571	C	T	460.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:25,24:0.49:49
chr20	36572310	rs11365082	AC	A	777.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.827;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=17.165;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=1.333;QD=6.32;ReadPosRankSum=-1.933;SOR=0.068;set=HC	GT:AD:AF:DP	0/1:78,45:0.37:123
chr20	36615416	rs6022212	A	G	789.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr20	36615585	rs58202748	G	A	2259.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:46,95:0.67:141
chr20	36624756	rs2273349	C	A	3576.77	.	AC=1;AF=0.500;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	0/1:67,157:0.70:224
chr20	36662255	rs881556	C	T	1473.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:26,56:0.68:82
chr20	36668874	rs2273353	G	A	1309.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:34,59:0.63:93
chr20	36677002	rs2273354	C	G	684.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:19,30:0.61:49
chr20	36678416	rs6097507	A	G	3396.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr20	36685915	rs2256288	T	C	3901.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	36688068	rs6022706	A	G	106.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr20	36718059	rs3746466	G	A	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:18,31:0.63:49
chr20	36758778	rs2076377	G	C	1020.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.98;ReadPosRankSum=0.587;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:141,64:0.31:205
chr20	36759751	rs111895659	A	AC	416.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=1.467;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:67,24:0.26:91
chr20	36761014	rs2076386	G	A	1451.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.465;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=1.214;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:221,84:0.28:305
chr20	36761202	rs1555074	G	A	3138.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:354,179:0.34:533
chr20	36769792	rs2076389	G	A	2532.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:240,135:0.36:375
chr20	36769839	rs12624511	G	A	1861.77	.	AC=1;AF=0.500;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	0/1:136,94:0.41:230
chr20	36770588	rs2076390	C	T	3423.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:388,192:0.33:580
chr20	36793501	rs2067027	A	G	5486.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:164,256:0.61:420
chr20	36793529	rs2076380	G	A	2911.77	.	AC=1;AF=0.500;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	0/1:210,151:0.42:361
chr20	36868191	rs1205433	C	T	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:46,77:0.63:123
chr20	36869516	rs1205434	C	A	3068.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:75,129:0.63:204
chr20	36870122	rs1205435	T	G	4379.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:97,197:0.67:294
chr20	36919616	rs6014601	G	A	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:28,73:0.72:101
chr20	36932551	rs1341022	G	C	3430.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:106,158:0.60:264
chr20	36932660	rs1341023	C	T	3108.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:99,146:0.60:245
chr20	36932676	rs1341024	G	C	2329.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:79,113:0.59:192
chr20	36932798	rs5741798	C	G	361.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:4,14:0.78:18
chr20	36937246	rs2066252	G	A	1517.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,68:0.71:96
chr20	36946848	rs4358188	G	A	1519.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:148,86:0.37:234
chr20	36953097	rs5741806	C	T	1078.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:139,60:0.30:199
chr20	36959318	rs5743533	G	A	602.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:42,29:0.41:71
chr20	36959353	rs5743534	A	G	1189.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:82,60:0.42:142
chr20	36959566	rs2425357	A	G	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr20	36959732	rs6127771	C	T	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr20	36965617	rs1131847	A	G	1025.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:106,57:0.35:163
chr20	36989269	rs1780623	C	T	1419.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:21,62:0.75:83
chr20	36989302	rs1780624	C	G	2262.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:34,104:0.75:138
chr20	36989381	rs2232596	G	A	4200.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:76,190:0.71:266
chr20	36995340	rs1739639	C	T	2107.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:51,91:0.64:142
chr20	36997632	rs1780627	T	C	6476.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:201,300:0.60:501
chr20	37005536	rs745144	T	C	2462.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:67,118:0.64:185
chr20	37055875	rs707578	T	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	37062583	rs788347	T	C	11042.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chr20	37146131	.	C	CT	324.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.066;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.898;QD=1.48;ReadPosRankSum=2.308;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:169,50:0.23:219
chr20	37191391	.	G	GT	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211;ClippingRankSum=0.000;DP=166;ExcessHet=3.0103;FS=4.461;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.57;ReadPosRankSum=-0.080;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:114,25:0.18:139
chr20	37230486	rs6070740	C	A	628.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	37252210	rs6064778	C	A	4859.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.992;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.31;ReadPosRankSum=-0.962;SOR=0.499;set=HC	GT:AD:AF:DP	1/1:1,191:0.99:192
chr20	37255995	rs148944768	A	ATGTGTGTTGGTG	5186.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.76;MQRankSum=2.826;QD=41.16;ReadPosRankSum=1.289;SOR=1.107;set=HC	GT:AD:AF:DP	1/1:2,124:0.98:126
chr20	37257384	rs35399405	A	G	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	37257590	rs6070809	C	G	3376.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.98;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	37266205	rs6026964	C	A	1852.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	37272412	.	T	C	3076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093;ClippingRankSum=0.000;DP=530;ExcessHet=3.0103;FS=0.548;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.82;ReadPosRankSum=-2.389;SOR=0.644;set=HC	GT:AD:AF:DP	0/1:346,183:0.35:529
chr20	37272589	rs419162	G	A	1689.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr20	37274559	rs11426603	C	CA	4383.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	37274861	rs117796	A	G	2654.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	37277153	rs220527	G	T	1751.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	37277271	rs220526	C	T	4679.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.29;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	37278558	rs6027039	C	T	5076.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	37278569	rs6027040	A	C	4720.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	37278612	rs220522	T	A	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	37278823	rs220521	T	C	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	37278946	rs220520	T	C	5120.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	37279255	rs220519	C	T	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr20	37279376	rs67738971	TGACGA	T	8249.73	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,185:1.00:185
chr20	37279458	rs6015551	C	T	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	37383482	rs35702444	T	G	378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=0.483;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:43,13:0.23:56
chr20	37383484	rs35956429	G	A	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.814;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.375;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:44,13:0.23:57
chr20	37383487	.	TC	CT	436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.792;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=1.345;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.28;ReadPosRankSum=-0.068;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:46,14:0.23:60
chr20	37395979	.	A	AT	55.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.042;ClippingRankSum=0.000;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.36;ReadPosRankSum=0.883;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:31,10:0.24:41
chr20	37524424	rs140138596	T	TCCTCCCTTCCTCCCTTCCTTCTTTCTTC	2307.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=1.593;MLEAC=2;MLEAF=1.000;MQ=68.47;MQRankSum=6.731;QD=37.22;ReadPosRankSum=5.828;SOR=1.249;set=HC	GT:AD:AF:DP	1/1:15,47:0.76:62
chr20	37534582	rs12626105	A	G	6943.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr20	37534665	rs4812332	C	T	6734.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr20	37547374	rs4812336	G	A	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	37555116	rs3752290	G	C	9011.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr20	37570725	rs3752293	C	T	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	37580130	rs4300896	A	C	1343.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	37591198	rs974560	C	T	154.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,9:0.28:32
chr20	37620888	rs4812348	G	C	444.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:41,20:0.33:61
chr20	37630606	rs3764701	A	T	884.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,50:0.38:132
chr20	37634664	rs4812351	T	A	356.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr20	37635027	rs3752298	T	C	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-1.076;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:32,11:0.26:43
chr20	37643659	rs3764703	T	C	970.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:109,47:0.30:156
chr20	37647605	rs2867897	A	C	1701.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:34,72:0.68:106
chr20	37662835	rs3834993	CT	C	1117.73	.	AC=1;AF=0.500;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	0/1:140,50:0.26:190
chr20	37663062	rs80042855	C	T	903.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:79,47:0.37:126
chr20	37667182	rs3752302	C	T	1422.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=1.304;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.68;ReadPosRankSum=1.627;SOR=0.570;set=HC	GT:AD:AF:DP	0/1:74,73:0.50:147
chr20	39609426	rs4812473	C	T	3410.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	39634704	rs73257868	G	A	557.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:92,34:0.27:126
chr20	39704995	rs6072262	G	A	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:84,36:0.30:120
chr20	39743905	rs6072275	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=1.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=-0.586;SOR=0.212;set=HC	GT:AD:AF:DP	0/1:23,7:0.23:30
chr20	39788855	rs2076148	A	G	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:31,25:0.45:56
chr20	39792063	rs2228246	A	G	1378.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.352;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-2.324;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:272,94:0.26:366
chr20	39794489	rs6124323	G	A	1814.77	.	AC=1;AF=0.500;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	0/1:186,99:0.35:285
chr20	39797465	rs753381	T	C	861.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.007;ClippingRankSum=0.000;DB;DP=207;ExcessHet=3.0103;FS=2.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.017;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:150,57:0.28:207
chr20	39813729	rs2664537	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:135,68:0.33:203
chr20	39830122	rs2235367	A	G	64.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:13,5:0.28:18
chr20	39832628	rs17265513	T	C	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:133,90:0.40:223
chr20	40116207	rs3092194	G	A	961.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:24,40:0.62:64
chr20	40714592	rs200706584	C	CT	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.000;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=-1.498;SOR=0.536;set=HC	GT:AD:AF:DP	0/1:29,10:0.26:39
chr20	40863182	rs6030076	C	A	316.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:39,18:0.32:57
chr20	40979160	rs2071854	T	C	1001.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:27,42:0.61:69
chr20	40980987	rs6065464	G	A	111.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:27,8:0.23:35
chr20	41306488	rs111229158	G	GA,GAA	738.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.803;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=5.093;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.29;MQRankSum=0.364;QD=20.52;ReadPosRankSum=-0.178;SOR=3.258;set=HC	GT:AD:AF:DP	1/2:2,18,16:0.50,0.44:36
chr20	41306600	rs2425516	A	G	2307.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.872;ClippingRankSum=0.000;DB;DP=174;ExcessHet=3.0103;FS=2.804;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.277;QD=13.34;ReadPosRankSum=0.598;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:60,113:0.65:173
chr20	41400229	rs6030462	G	A	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:54,39:0.42:93
chr20	41514690	.	C	CAT	332.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=5.683;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.05;ReadPosRankSum=0.164;SOR=0.257;set=HC	GT:AD:AF:DP	0/1:33,22:0.40:55
chr20	41818289	rs2867655	C	G	796.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	42088708	rs61733949	G	A	3748.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:71,162:0.70:233
chr20	42089140	rs34934568	T	A	192.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr20	42089511	rs2235611	T	C	6704.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr20	42163768	rs2071968	C	G	2005.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	42195863	rs4812721	G	C	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr20	42196498	rs55848276	A	G	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:25,27:0.52:52
chr20	42196550	rs2067061	T	G	1238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.131;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=1.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.61;ReadPosRankSum=-1.373;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:33,58:0.64:91
chr20	42196738	rs6017119	C	G	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	42197892	rs62224803	G	T	458.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:13,20:0.61:33
chr20	42199704	.	GGTGTGT	G,GGT	1909.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=62;set=Intersection	GT:AF:DP	1/2:0.22,0.78:50
chr20	42199925	rs3127060	G	A	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	42205061	rs763227	G	A	2234.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	42208522	rs2301483	T	G	2038.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	42225114	rs2664519	G	A	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr20	42242700	rs4473450	C	T	3307.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr20	42249398	rs1555348	C	T	1183.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr20	42249479	rs11483104	C	CT	2827.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.284;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=0.842;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=15.80;ReadPosRankSum=1.295;SOR=0.604;set=HC	GT:AD:AF:DP	1/1:26,153:0.85:179
chr20	42264502	rs6031007	G	A	6452.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	42264726	rs2273523	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	42265700	rs6065638	T	C	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	42265966	rs6031008	G	A	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	42275499	rs393115	G	T	3971.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr20	42302201	rs826949	C	T	1063.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	42302371	rs826950	C	T	9852.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr20	42310509	rs442143	T	C	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	42328639	rs285162	T	C	3865.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr20	42328749	rs285163	A	G	676.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr20	42574442	rs4812769	T	C	2323.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=1.749;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr20	42697187	rs41283266	T	C	747.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:18,29:0.62:47
chr20	42697651	rs6017258	G	C	1780.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:37,83:0.69:120
chr20	42745115	rs6073336	T	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chr20	42806429	rs2064381	A	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chr20	42814890	rs75804573	G	A	1522.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:22,63:0.74:85
chr20	42814931	rs6031442	T	C	5240.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr20	42815190	rs1883790	G	A	17476.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:0,656:1.00:656
chr20	42939750	rs6073401	T	C	26964.77	.	AC=2;AF=1.00;AN=2;DB;DP=1027;set=Intersection	GT:AD:AF:DP	1/1:2,1014:1.00:1016
chr20	43030160	rs113725562	G	A	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:78,166:0.68:244
chr20	43034660	rs736824	T	C	83.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:3,4:0.57:7
chr20	43034693	rs745975	C	T	104.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:6,5:0.45:11
chr20	43034783	rs736823	C	T	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.38;ReadPosRankSum=0.018;SOR=0.750;set=HC	GT:AD:AF:DP	0/1:28,51:0.65:79
chr20	43036649	rs8121034	A	G	130.77	.	AC=1;AF=0.500;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr20	43036691	rs8122476	T	G	488.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:13,22:0.63:35
chr20	43043051	rs3212194	C	G	396.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:60,26:0.30:86
chr20	43043095	rs3212195	G	A	942.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:129,60:0.32:189
chr20	43052570	rs2273618	T	C	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chr20	43058018	rs3746574	T	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:42,19:0.31:61
chr20	43058096	rs3746575	C	G	1011.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.927;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=3.170;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=0.100;SOR=0.962;set=HC	GT:AD:AF:DP	0/1:162,59:0.27:221
chr20	43254490	rs244074	A	G	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	43264927	rs394105	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	43343895	rs376618937	TGTGTGTGAGC	T	173.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.309;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.197;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=1.251;QD=8.27;ReadPosRankSum=0.757;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:12,9:0.43:21
chr20	43343899	.	TGTGAGC	T	158.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.867;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.43;MQRankSum=-0.714;QD=7.94;ReadPosRankSum=2.279;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr20	43343908	rs1980803	G	A	1454.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.30;QD=45.46;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	43343930	rs1980804	T	G	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	43348653	rs33932543	G	A	1668.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:197,92:0.32:289
chr20	43356156	rs1061098	C	T	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr20	43374839	rs3834659	GC	G	2004.73	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:31,62:0.67:93
chr20	43378770	rs1111032	A	G	3337.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	43379264	rs6073538	A	C	6273.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=214;ExcessHet=3.0103;FS=3.351;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=30.91;ReadPosRankSum=0.914;SOR=2.153;set=HC	GT:AD:AF:DP	1/1:2,201:0.99:203
chr20	43379264	.	ACCCC	CCCCA,CCCCC	2189	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.3;FR=0.5000,0.5000;HP=6;HapScore=1;MGOF=4;MMLQ=23;MQ=59.72;NF=20,55;NR=44,128;PP=862,2189;QD=14.3041855447;SC=CGCTGCCCGCACCCCCAGCCC;SbPval=0.48;Source=Platypus;TC=185;TCF=56;TCR=129;TR=64,183;WE=43379276;WS=43379253;set=Platypus	GT:AF:DP	0/1:0.35:185
chr20	43379268	rs13037900	C	A	1441.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.547;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=2.920;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.03;ReadPosRankSum=1.455;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:132,73:0.36:205
chr20	43379454	rs13042905	T	C	5314.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,200:1.00:200
chr20	43534934	rs2425675	G	A	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:25,9:0.26:34
chr20	43538733	rs2072727	T	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:71,28:0.28:99
chr20	43547537	rs2072728	A	G	1481.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:13,66:0.84:79
chr20	43547677	rs2075960	T	G	2072.77	.	AC=1;AF=0.500;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	0/1:198,120:0.38:318
chr20	43550045	rs2425686	A	T	979.79	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:5,37:0.88:42
chr20	43559002	rs13045314	G	A	226.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:47,15:0.24:62
chr20	43559043	rs3746580	G	T	627.77	.	AC=1;AF=0.500;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	0/1:78,35:0.31:113
chr20	43565622	rs3746584	G	A	990.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:125,60:0.32:185
chr20	43565804	rs6094057	G	A	176.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=4.589;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.03;ReadPosRankSum=-1.751;SOR=0.136;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr20	43566787	rs11780	A	G	1665.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:250,107:0.30:357
chr20	43567442	rs6073572	T	C	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr20	43577620	rs2234206	C	G	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	43577644	rs1884440	C	T	1113.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	43588802	rs2234200	A	G	668.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:58,32:0.36:90
chr20	43589041	rs2234197	G	A	1235.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:110,64:0.37:174
chr20	43600673	rs6130717	C	G	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	43623658	rs6017460	C	T	863.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	43625565	rs67595276	CTTGA	C	2801.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:48,72:0.60:120
chr20	43629135	rs17420378	G	A	1453.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:97,77:0.44:174
chr20	43653810	rs13044852	G	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:86,48:0.36:134
chr20	43681951	rs2284275	C	T	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	43739119	rs17422688	G	A	2766.77	.	AC=1;AF=0.500;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	0/1:266,154:0.37:420
chr20	43743534	rs11700135	G	A	2992.77	.	AC=1;AF=0.500;AN=2;DB;DP=532;set=Intersection	GT:AD:AF:DP	0/1:361,170:0.32:531
chr20	43803613	rs17333103	C	T	1653.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:152,88:0.37:240
chr20	43803708	rs17333180	C	A	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr20	43804522	rs2664581	A	C	1312.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:147,72:0.33:219
chr20	43804789	rs34885285	C	A	721.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.050;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=3.577;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.17;ReadPosRankSum=1.004;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:48,23:0.32:71
chr20	43804797	rs17424474	C	A	675.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=1.120;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.65;ReadPosRankSum=0.705;SOR=0.976;set=HC	GT:AD:AF:DP	0/1:38,20:0.34:58
chr20	43835683	rs2233882	T	A	1391.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:173,84:0.33:257
chr20	43835822	rs2233883	T	C	300.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:63,20:0.24:83
chr20	43836173	rs2301366	T	A	13154.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,493:1.00:493
chr20	43837303	rs2233889	C	T	5185.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;set=Intersection	GT:AD:AF:DP	0/1:113,228:0.67:341
chr20	43850072	rs41303937	C	T	3531.77	.	AC=1;AF=0.500;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	0/1:81,162:0.67:243
chr20	43850143	rs2233895	T	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:70,39:0.36:109
chr20	43850400	rs2233896	C	A	1322.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.38;ReadPosRankSum=-1.189;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:219,83:0.27:302
chr20	43850525	rs2233898	A	G	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:239,115:0.32:354
chr20	43851094	rs2233901	G	A	4233.77	.	AC=1;AF=0.500;AN=2;DB;DP=693;set=Intersection	GT:AD:AF:DP	0/1:458,233:0.34:691
chr20	43851108	rs2233903	C	T	9935.77	.	AC=1;AF=0.500;AN=2;DB;DP=645;set=Intersection	GT:AD:AF:DP	0/1:212,432:0.67:644
chr20	43851375	rs2071650	G	C	5641.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:176,262:0.60:438
chr20	43881577	rs60478948	G	A	1156.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,47:0.72:65
chr20	43881630	rs6032073	A	G	3638.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr20	43922403	rs2233107	G	A	1434.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:43,62:0.59:105
chr20	43926536	rs2227274	G	T	3209.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:85,146:0.63:231
chr20	43926573	rs2227275	C	T	4312.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:118,196:0.62:314
chr20	43929659	rs2076023	G	A	6448.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:160,295:0.65:455
chr20	43933021	rs2072788	G	T	982.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:68,46:0.40:114
chr20	43933163	rs2233094	T	C	1548.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:130,77:0.37:207
chr20	43940112	rs2743327	C	G	1727.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:43,78:0.64:121
chr20	43943014	rs140933463	C	A	948.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:75,48:0.39:123
chr20	43964407	rs2072791	G	C	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	43964707	rs3830725	C	CT	1146.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:17,38:0.69:55
chr20	43976875	rs5841588	GC	G,GCC	6979.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=282;set=Intersection	GT:AF:DP	1/2:0.76,0.22:276
chr20	43992271	rs41307197	C	T	5976.77	.	AC=1;AF=0.500;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	0/1:128,276:0.68:404
chr20	43995410	rs6032142	C	T	1585.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	44002665	rs2231626	C	G	3040.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr20	44004155	rs10546815	CATT	C	4047.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	44006078	rs2231614	C	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr20	44038574	rs1127497	A	G	11566.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr20	44047308	rs79712339	G	A	382.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	44048065	rs3092108	C	CG	16701.73	.	AC=2;AF=1.00;AN=2;DB;DP=593;set=Intersection	GT:AD:AF:DP	1/1:5,544:0.99:549
chr20	44049916	rs3092450	T	TC	2111.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr20	44053069	rs2741566	T	C	24524.77	.	AC=2;AF=1.00;AN=2;DB;DP=900;set=Intersection	GT:AD:AF:DP	1/1:0,899:1.00:899
chr20	44054349	rs707577	T	C	17002.77	.	AC=2;AF=1.00;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	1/1:2,658:1.00:660
chr20	44099654	rs74618173	T	C	532.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:33,25:0.43:58
chr20	44108187	.	A	G	656.77	.	AC=1;AF=0.500;AN=2;DP=106;set=Intersection	GT:AD:AF:DP	0/1:73,33:0.31:106
chr20	44108796	rs76617043	C	A	201.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:26,11:0.30:37
chr20	44141201	rs11470736	TCACACA	T	2413.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr20	44141331	rs6032259	A	G	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	44144118	rs8125061	C	T	3257.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:53,182:0.77:235
chr20	44144272	rs6032262	G	T	711.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr20	44163988	rs6032274	T	C	1505.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr20	44170712	rs11594	C	A	2215.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	44174423	rs765156	G	A	7565.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr20	44180813	rs17348421	G	A	4007.77	.	AC=1;AF=0.500;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	0/1:77,171:0.69:248
chr20	44180868	rs17433181	A	G	1763.77	.	AC=1;AF=0.500;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	0/1:41,76:0.65:117
chr20	44181723	rs2294559	A	G	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,8:0.57:14
chr20	44181980	rs3817886	C	A	3687.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=3.259;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.42;ReadPosRankSum=-0.429;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:108,189:0.64:297
chr20	44182081	rs6032299	A	G	1074.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:18,42:0.70:60
chr20	44184285	rs6032305	G	A	157.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chr20	44184375	rs2250860	T	C	709.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:24,31:0.56:55
chr20	44187666	rs368388152	C	T	1497.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=317;ExcessHet=3.0103;FS=2.077;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.098;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:225,92:0.29:317
chr20	44190705	rs3817887	T	G	3581.77	.	AC=1;AF=0.500;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	0/1:109,165:0.60:274
chr20	44190996	rs2272956	A	G	190.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chr20	44208011	rs7273669	C	T	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:61,145:0.70:206
chr20	44314609	rs232729	A	G	605.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.458;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.67;ReadPosRankSum=-0.441;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:125,40:0.24:165
chr20	44331043	rs6032445	C	T	35.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309;ClippingRankSum=0.000;DB;DP=15;ExcessHet=3.0103;FS=3.222;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-1.090;SOR=0.124;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chr20	44333052	rs980984	A	G	540.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:26,24:0.48:50
chr20	44333326	rs11361717	CT	C	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.235;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=1.776;QD=4.30;ReadPosRankSum=2.213;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:22,20:0.48:42
chr20	44334394	rs232291	A	C	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:25,10:0.29:35
chr20	44334588	rs232290	C	G	1750.77	.	AC=1;AF=0.500;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	0/1:243,105:0.30:348
chr20	44350931	rs232262	C	G	1508.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:178,83:0.32:261
chr20	44354387	rs232259	A	C	349.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,17:0.34:50
chr20	44378577	rs380421	T	C	8945.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr20	44402970	rs73122720	C	T	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:15,39:0.72:54
chr20	44417643	rs6032537	A	G	7128.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr20	44417675	rs6032538	G	C	5191.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr20	44418471	rs411945	G	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	44418564	rs3746493	A	G	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	44420637	rs2664539	G	A	944.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:17,42:0.71:59
chr20	44420682	rs2664591	T	C	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.60;SOR=0.773;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	44422373	rs6032544	T	C	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	44422705	rs6032545	G	T	825.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:11,38:0.78:49
chr20	44423843	rs6104350	C	A	578.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr20	44424151	.	T	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DP=68;ExcessHet=3.0103;FS=1.231;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=1.476;SOR=0.448;set=HC	GT:AD:AF:DP	0/1:53,15:0.22:68
chr20	44425026	rs11477536	CA	C	713.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=5.026;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.67;ReadPosRankSum=1.362;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:35,58:0.62:93
chr20	44429633	rs11458259	C	CA	723.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=3.338;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.174;QD=4.21;ReadPosRankSum=-0.002;SOR=0.450;set=HC	GT:AD:AF:DP	0/1:107,65:0.38:172
chr20	44441403	rs11537645	C	G	1286.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:166,75:0.31:241
chr20	44451901	rs8860	T	C	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	44452697	rs4629	C	A	5646.77	.	AC=1;AF=0.500;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	0/1:142,265:0.65:407
chr20	44452771	rs59673641	A	G	1120.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:135,60:0.31:195
chr20	44453335	rs144529565	A	AC	2461.73	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:120,123:0.51:243
chr20	44456059	rs373018	T	C	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:41,67:0.62:108
chr20	44462475	rs116024725	C	T	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=2.893;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=-0.132;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chr20	44466875	rs146474943	ATTCTTT	A	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.54;ReadPosRankSum=-2.056;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chr20	44467044	rs138869757	C	G	238.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=-2.327;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:18,15:0.45:33
chr20	44467067	rs189029660	A	T	150.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.43;ReadPosRankSum=1.200;SOR=0.770;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr20	44468931	rs197669	T	C	2015.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	44468982	rs11418101	A	AC	5178.73	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr20	44469290	rs4638862	G	A	13221.77	.	AC=1;AF=0.500;AN=2;DB;DP=872;set=Intersection	GT:AD:AF:DP	0/1:266,604:0.69:870
chr20	44470648	.	C	CT	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=0.000;DP=291;ExcessHet=3.0103;FS=0.688;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=0.000;QD=0.34;ReadPosRankSum=1.825;SOR=0.621;set=HC	GT:AD:AF:DP	0/1:200,39:0.16:239
chr20	44470676	rs3848713	T	C	4625.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr20	44472163	rs55931834	C	T	5664.77	.	AC=1;AF=0.500;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	0/1:142,254:0.64:396
chr20	44482659	rs34682341	GT	G	367.73	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:49,28:0.36:77
chr20	44501458	rs6130959	A	G	2087.77	.	AC=1;AF=0.500;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	0/1:46,94:0.67:140
chr20	44505830	rs61733888	C	T	1798.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.090;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.72;ReadPosRankSum=1.337;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:274,107:0.28:381
chr20	44505973	rs2903808	T	C	6744.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr20	44506418	rs1045493	G	A	2747.77	.	AC=1;AF=0.500;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	0/1:71,117:0.62:188
chr20	44506661	rs17446462	G	A	3496.77	.	AC=1;AF=0.500;AN=2;DB;DP=494;set=Intersection	GT:AD:AF:DP	0/1:300,191:0.39:491
chr20	44507307	rs17446511	T	C	633.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:123,41:0.25:164
chr20	44515059	rs6094224	T	C	1006.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:31,44:0.59:75
chr20	44516444	rs7268221	A	G	1539.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:22,60:0.73:82
chr20	44517360	rs1516580	T	C	1092.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	44518843	rs3817731	A	T	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr20	44519643	rs2868362	G	A	1402.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:46,63:0.58:109
chr20	44520237	rs3080212	CCTGCTG	CCTG,C	14889.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=389;set=Intersection	GT:AF:DP	1/1:0.99:342
chr20	44520579	rs742035	C	G	1721.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:168,96:0.36:264
chr20	44522005	rs742034	A	G	6890.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	44522125	rs10633828	C	CT	302.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.62;MQRankSum=0.000;QD=12.11;ReadPosRankSum=2.759;SOR=0.610;set=HC	GT:AD:AF:DP	1/1:4,21:0.84:25
chr20	44522594	rs4810476	A	G	5516.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr20	44523248	rs2075962	T	C	6084.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr20	44523442	rs3215446	TC	T	10330.73	.	AC=1;AF=0.500;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	0/1:211,379:0.64:590
chr20	44523547	rs2075961	G	A	12449.77	.	AC=2;AF=1.00;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr20	44523782	rs4608591	C	T	11741.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr20	44525464	rs11468785	GC	G	1469.73	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr20	44526783	rs7270170	G	A	2750.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:53,122:0.70:175
chr20	44530838	rs553359	G	T	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	44533731	rs141035863	C	T	1403.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:173,79:0.31:252
chr20	44538427	rs378114	T	C	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr20	44538484	rs435306	G	T	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	44540178	rs394643	A	G	1585.77	.	AC=1;AF=0.500;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	0/1:175,85:0.33:260
chr20	44576502	rs7679	T	C	2533.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:61,110:0.64:171
chr20	44578776	rs6065910	A	G	1435.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:20,54:0.73:74
chr20	44588109	rs3746507	G	A	2086.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:50,96:0.66:146
chr20	44594228	rs3746513	G	A	539.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:8,21:0.72:29
chr20	44596207	rs6032606	C	G	5580.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:143,245:0.63:388
chr20	44599839	rs6017715	G	C	2420.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:62,105:0.63:167
chr20	44638781	rs3918251	A	G	1082.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.377;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.897;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.88;ReadPosRankSum=-0.351;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:27,51:0.65:78
chr20	44639511	rs3918253	C	T	2610.77	.	AC=1;AF=0.500;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	0/1:279,139:0.33:418
chr20	44640225	rs17576	A	G	8605.77	.	AC=1;AF=0.500;AN=2;DB;DP=721;set=Intersection	GT:AD:AF:DP	0/1:302,419:0.58:721
chr20	44640959	rs3918256	G	A	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	0/1:242,109:0.31:351
chr20	44642406	rs2250889	G	C	3764.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	44642833	rs13969	A	C	415.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:28,22:0.44:50
chr20	44645010	rs20544	C	T	1538.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.729;ClippingRankSum=0.000;DB;DP=245;ExcessHet=3.0103;FS=0.495;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.28;ReadPosRankSum=1.814;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:156,89:0.36:245
chr20	44657965	rs117226031	C	T	1947.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:71,103:0.59:174
chr20	44663475	rs11699481	T	C	240.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:33,13:0.28:46
chr20	44665875	rs77623489	T	C	1232.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:36,56:0.61:92
chr20	44671875	rs16985442	C	G	7518.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:232,345:0.60:577
chr20	44673546	rs2297197	C	G	3222.77	.	AC=1;AF=0.500;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	0/1:88,153:0.63:241
chr20	44673722	rs41282782	G	A	7885.77	.	AC=1;AF=0.500;AN=2;DB;DP=526;set=Intersection	GT:AD:AF:DP	0/1:153,368:0.71:521
chr20	44674743	rs2297199	A	C	876.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;ClippingRankSum=0.000;DB;DP=208;ExcessHet=3.0103;FS=0.632;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=0.393;SOR=0.762;set=HC	GT:AD:AF:DP	0/1:156,51:0.25:207
chr20	44675136	rs3848727	T	C	1558.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr20	44678348	rs6032635	G	A	6352.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.36;SOR=0.824;set=HC	GT:AD:AF:DP	1/1:0,241:1.00:241
chr20	44686091	rs116878061	G	T	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:390,170:0.30:560
chr20	44691350	rs1537028	T	G	1604.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:231,102:0.31:333
chr20	44693947	rs2903908	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:46,18:0.28:64
chr20	44746982	rs1883832	T	C	4075.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr20	44750850	rs11569317	C	G	3133.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:88,151:0.63:239
chr20	44756943	.	CT	C	116.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;ClippingRankSum=0.000;DP=119;ExcessHet=3.0103;FS=1.342;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.164;QD=2.12;ReadPosRankSum=-0.338;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:32,23:0.42:55
chr20	44757814	rs11569343	C	G	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:33,39:0.54:72
chr20	44979641	rs4810503	TA	GC	1456.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr20	44985307	rs911435	T	G	4985.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	44996182	rs2257495	A	G	6117.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr20	44996305	rs2297057	A	G	367.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:33,18:0.35:51
chr20	44998791	rs2261964	C	T	2317.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	45003326	rs2261213	A	G	2106.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr20	45003788	rs2257545	T	C	698.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr20	45003977	rs41310805	C	T	2081.77	.	AC=1;AF=0.500;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	0/1:72,99:0.58:171
chr20	45023247	rs2274676	T	C	76.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=4.685;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.95;ReadPosRankSum=-0.193;SOR=0.142;set=HC	GT:AD:AF:DP	0/1:19,7:0.27:26
chr20	45131665	rs111517766	T	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:34,69:0.67:103
chr20	45188971	rs910062	C	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:37,20:0.35:57
chr20	45192253	rs59207395	G	GA	863.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.612;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.70;ReadPosRankSum=-0.880;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:60,29:0.33:89
chr20	45192254	.	G	A	741	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=2;HapScore=2;MGOF=8;MMLQ=25;MQ=60.0;NF=6;NR=15;PP=741;QD=36.9414863118;SC=ACAGCAAGAGGGAGAGAGAGA;SbPval=0.89;Source=Platypus;TC=78;TCF=32;TCR=46;TR=21;WE=45192262;WS=45192239;set=Platypus	GT:AD:AF:DP	1/0:57,21:0.27:78
chr20	45192254	rs35374760	G	GAGAGAGA	627.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.133;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.30;ReadPosRankSum=-1.076;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:60,26:0.30:86
chr20	45204266	rs1880898	G	A	1614.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:184,92:0.33:276
chr20	45216784	rs35393013	A	T	3973.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:129,188:0.59:317
chr20	45353542	.	T	TGGATGGAA	607	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=2;HapScore=2;MGOF=10;MMLQ=28;MQ=62.65;NF=12;NR=4;PP=607;QD=38.4375;SC=GATGGATGGATGGTTTGAATG;SbPval=0.69;Source=Platypus;TC=28;TCF=20;TCR=8;TR=16;WE=45353550;WS=45353532;set=Platypus	GT:AD:AF:DP	1/0:12,16:0.57:28
chr20	45358145	rs2425906	T	G	3108.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.12;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	45358223	rs2425907	C	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr20	45629941	rs3746492	G	A	1948.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	45630157	rs6094549	T	G	3225.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr20	45725959	rs947018	A	G	339.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,16:0.47:34
chr20	45795744	rs3091782	T	C	545.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:91,35:0.28:126
chr20	45795855	rs3092020	A	G	445.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:16,22:0.58:38
chr20	45797749	.	TTC	T	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.583;ClippingRankSum=0.000;DP=208;ExcessHet=3.0103;FS=2.988;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.696;SOR=0.554;set=HC	GT:AD:AF:DP	0/1:168,32:0.16:200
chr20	45797883	rs3091653	C	T	1302.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=3.030;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=0.144;SOR=0.898;set=HC	GT:AD:AF:DP	0/1:179,78:0.30:257
chr20	45797954	rs3091593	T	A	507.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:62,29:0.32:91
chr20	45798014	rs3091985	C	G	73.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.786;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.64;ReadPosRankSum=0.177;SOR=1.016;set=HC	GT:AD:AF:DP	0/1:38,7:0.16:45
chr20	45801319	rs3827049	T	A	610.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chr20	45809652	rs2235907	A	G	979.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:15,40:0.73:55
chr20	45811860	rs8124918	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	0/1:21,48:0.70:69
chr20	45816594	rs3818012	G	A	1123.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:19,46:0.71:65
chr20	45816639	rs3818013	A	G	3651.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128;ClippingRankSum=0.000;DB;DP=137;ExcessHet=3.0103;FS=1.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.05;ReadPosRankSum=1.460;SOR=0.886;set=HC	GT:AD:AF:DP	0/1:47,88:0.65:135
chr20	45816649	rs3818014	C	T	3950.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=1.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.85;ReadPosRankSum=-0.123;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:52,107:0.67:159
chr20	45853037	rs2664544	A	G	9163.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr20	45856045	rs1124178	A	G	1952.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr20	45891189	rs2294560	T	C	531.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:18,25:0.58:43
chr20	45905651	rs3746485	T	C	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.814;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=8.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.13;ReadPosRankSum=0.539;SOR=1.479;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr20	45923383	rs2076402	G	T	5592.77	.	AC=1;AF=0.500;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	0/1:171,255:0.60:426
chr20	45923539	rs6066270	C	T	3500.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:82,153:0.65:235
chr20	46262701	rs6018604	T	G	1122.77	.	AC=1;AF=0.500;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	0/1:91,55:0.38:146
chr20	46262994	rs6018606	G	A	548.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:76,29:0.28:105
chr20	46267950	rs4810648	C	T	4452.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	46268008	rs2076548	A	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,19:0.38:50
chr20	46268493	rs2076546	A	G	964.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.272;ClippingRankSum=0.000;DB;DP=222;ExcessHet=3.0103;FS=0.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.35;ReadPosRankSum=1.982;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:155,67:0.30:222
chr20	46277716	rs202075763	T	C	972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.545;ClippingRankSum=0.000;DB;DP=164;ExcessHet=3.0103;FS=2.039;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=0.045;SOR=0.683;set=HC	GT:AD:AF:DP	0/1:107,56:0.34:163
chr20	46279604	rs202165867	T	TA	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.177;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=5.382;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.53;ReadPosRankSum=0.107;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:30,13:0.30:43
chr20	46279613	rs2745724	G	A	386.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=57;ExcessHet=3.0103;FS=8.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.79;ReadPosRankSum=0.614;SOR=1.995;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr20	46279814	.	TGCAGCAGCA	T	7094.73	.	AC=1;AF=0.500;AN=2;DP=474;set=Intersection	GT:AD:AF:DP	0/1:164,214:0.57:378
chr20	46279827	rs6018623	G	A	2374.73	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:249,129:0.34:378
chr20	46279863	.	GCAA	G	2991	.	AC=1;AF=0.500;AN=2;BRF=0.18;FR=0.5000;HP=1;HapScore=1;MGOF=34;MMLQ=28;MQ=59.86;NF=35;NR=105;PP=2991;QD=20;SC=AGCAGCAGCAGCAACAGCAAC;SbPval=0.34;Source=Platypus;TCF=80;TR=140;WE=46279874;WS=46279853;set=Platypus	GT:AD:AF:DP	0/1:218,140:0.39:358
chr20	46279866	rs28529067	A	G	1196.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=612;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.54;MQRankSum=-0.226;QD=2.38;ReadPosRankSum=6.529;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:399,103:0.21:502
chr20	46282339	rs3092324	A	AAT	749.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.456;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.293;MLEAC=1;MLEAF=0.500;MQ=60.33;MQRankSum=2.719;QD=9.26;ReadPosRankSum=-0.938;SOR=0.452;set=HC	GT:AD:AF:DP	0/1:57,24:0.30:81
chr20	46282346	rs3092417	A	G	677.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.970;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-0.903;SOR=0.521;set=HC	GT:AD:AF:DP	0/1:56,20:0.26:76
chr20	46287012	rs444271	C	G	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	46294725	rs2076545	C	T	4000.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:99,182:0.65:281
chr20	46294864	rs13044281	A	G	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.162;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=16.253;MLEAC=1;MLEAF=0.500;MQ=58.04;MQRankSum=-1.389;QD=0.72;ReadPosRankSum=1.037;SOR=1.523;set=HC	GT:AD:AF:DP	0/1:178,28:0.14:206
chr20	46305112	rs11906661	C	T	101.90	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:1,5:0.83:6
chr20	46313135	rs2297586	C	T	1491.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:29,61:0.68:90
chr20	46365571	rs3810526	A	G	8146.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.498;ClippingRankSum=0.000;DB;DP=320;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.46;ReadPosRankSum=-0.244;SOR=0.231;set=HC	GT:AD:AF:DP	1/1:1,319:1.00:320
chr20	46365636	rs56218501	C	T	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr20	47253150	rs2664521	T	C	12154.77	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,467:1.00:467
chr20	47262323	.	G	A	906.77	.	AC=1;AF=0.500;AN=2;DP=51;set=Intersection	GT:AD:AF:DP	0/1:17,34:0.67:51
chr20	47267747	rs183426405	G	A	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chr20	47272963	rs3091871	G	GC	24390.73	.	AC=2;AF=1.00;AN=2;DB;DP=652;set=Intersection	GT:AD:AF:DP	1/1:0,652:1.00:652
chr20	47273037	rs723291	C	T	10096.77	.	AC=1;AF=0.500;AN=2;DB;DP=695;set=Intersection	GT:AD:AF:DP	0/1:236,459:0.66:695
chr20	47361519	rs3746816	T	C	1566.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr20	47615074	.	T	TA	126.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.350;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=1.515;QD=2.08;ReadPosRankSum=0.572;SOR=0.352;set=HC	GT:AD:AF:DP	0/1:44,17:0.28:61
chr20	47648454	rs3091900	CA	C	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.024;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=2.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.50;ReadPosRankSum=1.268;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:83,21:0.20:104
chr20	47649510	.	C	CA	312.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.099;ClippingRankSum=0.000;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.026;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:164,52:0.24:216
chr20	47713063	rs17632	C	T	2506.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	47739814	rs2295714	C	T	5046.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.908;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	47770443	.	C	CA	265.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.912;ClippingRankSum=0.000;DP=151;ExcessHet=3.0103;FS=0.908;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.97;ReadPosRankSum=0.444;SOR=0.850;set=HC	GT:AD:AF:DP	0/1:94,41:0.30:135
chr20	47775441	.	A	AAAATAAAT	9114.73	.	AC=2;AF=1.00;AN=2;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr20	47775474	rs11480966	A	AC	10903.73	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:3,419:0.99:422
chr20	47782502	.	G	A	147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=8.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.269;SOR=2.147;set=HC	GT:AD:AF:DP	0/1:43,11:0.20:54
chr20	47839653	rs2273146	C	T	3372.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr20	47842853	rs238162	C	T	2089.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	47843146	rs6067024	A	T	3441.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	47845220	rs238165	T	A	3574.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr20	47846586	rs171130	T	C	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr20	47850182	rs238148	C	T	5083.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	47852822	rs238152	G	A	11876.77	.	AC=2;AF=1.00;AN=2;DB;DP=457;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr20	47856037	rs238156	T	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr20	47859015	rs238204	A	G	3861.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr20	47859217	rs1130146	G	A	10597.77	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr20	47859254	rs71186444	CTTTTTTTTTTTTTT	C	8052.73	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	47863409	rs144647523	ATT	A	2452.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:4,89:0.96:93
chr20	47865372	rs238208	G	A	15205.77	.	AC=2;AF=1.00;AN=2;DB;DP=570;set=Intersection	GT:AD:AF:DP	1/1:0,569:1.00:569
chr20	47865509	rs238209	G	A	15174.77	.	AC=2;AF=1.00;AN=2;DB;DP=563;set=Intersection	GT:AD:AF:DP	1/1:0,563:1.00:563
chr20	47866411	rs6063378	G	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	47872327	rs238220	A	G	3838.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr20	47872377	rs238221	C	G	3320.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	47874239	rs11295162	CT	C	1928.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.194;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=5.714;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.504;QD=8.77;ReadPosRankSum=0.766;SOR=1.198;set=HC	GT:AD:AF:DP	0/1:49,171:0.78:220
chr20	47881581	rs6063380	A	C	407.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	47882893	rs238178	T	A	1390.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.34;SOR=4.664;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr20	47886684	rs57950	G	A	4942.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr20	47892270	rs238191	T	C	2462.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr20	47942184	.	G	A	2962	.	AC=1;AF=0.500;AN=2;BRF=0.66;FR=0.5000;HP=1;HapScore=2;MGOF=7;MMLQ=25;MQ=59.66;NF=131;NR=75;PP=2962;QD=20;SC=CTGTTGTGAGGATTAAATGAA;SbPval=0.57;Source=Platypus;TC=451;TCF=283;TCR=168;TR=206;WE=47942192;WS=47942174;set=Platypus	GT:AD:AF:DP	1/0:245,206:0.46:451
chr20	47942184	.	G	GATTAAATGAAGTCATGTATGGGACTTGCTTGGTTTAGCATCCAAAGCACAATGAACGGGGTTATTAGATGGATGTTGTGAGA	8835.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.000;ClippingRankSum=-0.000;DP=805;ExcessHet=3.0103;FS=14.472;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=24.75;ReadPosRankSum=-0.319;SOR=3.894;set=HC	GT:AD:AF:DP	1/1:6,351:0.98:357
chr20	47990260	rs112735799	G	A	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:155,65:0.30:220
chr20	48099623	rs74361372	C	T	151.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.34;ReadPosRankSum=-1.444;SOR=0.541;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chr20	48099637	rs11476620	CT	C	189.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.755;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.41;ReadPosRankSum=0.578;SOR=0.792;set=HC	GT:AD:AF:DP	0/1:21,22:0.51:43
chr20	48129706	rs5629	G	T	1047.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.250;ClippingRankSum=0.000;DB;DP=219;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.85;ReadPosRankSum=0.189;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:151,65:0.30:216
chr20	48130628	rs6019879	T	C	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:25,8:0.24:33
chr20	48130982	rs7274202	C	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr20	48184462	rs6091005	C	T	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:3,10:0.77:13
chr20	48184682	.	G	GCGGGGCTGGCGGGGCTGA	620.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.897;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=2.287;QD=28.22;ReadPosRankSum=2.997;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,16:0.73:22
chr20	48184734	rs7262428	G	C	196.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr20	48184839	rs566544	TT	GG	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	48184845	rs5580	A	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	48184857	rs566508	C	G	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	48184871	rs566468	A	G	466.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.68;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	48184872	rs566466	T	G	466.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.86;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr20	48257149	rs421801	C	T	11087.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr20	48259034	rs2235855	A	G	976.77	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:118,55:0.32:173
chr20	48273299	rs4810968	T	C	3906.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr20	48300990	rs6019972	C	T	1662.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	48301146	rs6512586	G	A	2444.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;ClippingRankSum=0.000;DB;DP=495;ExcessHet=3.0103;FS=0.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.95;ReadPosRankSum=0.257;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:341,153:0.31:494
chr20	48330030	rs12329570	G	C	1064.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:145,61:0.30:206
chr20	48330045	rs117026282	G	A	1577.77	.	AC=1;AF=0.500;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	0/1:182,83:0.31:265
chr20	48429508	rs58677849	GG	CC	2082.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,84:0.98:86
chr20	48456238	rs2025958	G	A	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr20	48466166	rs6012755	G	A	920.77	.	AC=1;AF=0.500;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:142,57:0.29:199
chr20	48467560	rs532237	G	C	769.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr20	48471866	rs6020086	T	C	1814.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DB;DP=273;ExcessHet=3.0103;FS=1.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.67;ReadPosRankSum=0.274;SOR=0.802;set=HC	GT:AD:AF:DP	0/1:175,97:0.36:272
chr20	48479356	rs3092598	TATGA	T	1608.73	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	48491258	rs542234	T	G	22281.77	.	AC=2;AF=1.00;AN=2;DB;DP=841;set=Intersection	GT:AD:AF:DP	1/1:0,840:1.00:840
chr20	48494650	rs6020100	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	48500736	.	GAC	G	41.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQRankSum=-0.000;QD=10.43;ReadPosRankSum=-1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr20	48500777	rs61401115	A	G	49.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.53;MQRankSum=-0.000;QD=12.44;ReadPosRankSum=-1.383;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:2,2:0.50:4
chr20	48561893	rs4810993	A	G	2643.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr20	48562083	rs11473738	G	GTTGGACACC	4325.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr20	48562797	rs34800638	CT	C	176.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.855;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=0.973;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:100,37:0.27:137
chr20	48599473	rs113842434	AC	A	918.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	48701351	.	CT	C	175.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=0.369;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:37,25:0.40:62
chr20	48713049	rs6012831	G	A	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.880;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	48729677	rs126907	C	G	1295.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.274;ClippingRankSum=0.000;DB;DP=353;ExcessHet=3.0103;FS=6.573;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.69;ReadPosRankSum=-1.267;SOR=1.086;set=HC	GT:AD:AF:DP	0/1:260,91:0.26:351
chr20	48746189	rs6122878	C	T	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:190,93:0.33:283
chr20	48760238	.	C	CT	44.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=1.080;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.971;QD=0.51;ReadPosRankSum=0.865;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:70,17:0.20:87
chr20	48770159	rs232733	T	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	48894872	rs3761180	T	C	7177.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	0/1:218,344:0.61:562
chr20	48894919	rs12625213	C	T	4059.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:126,177:0.58:303
chr20	49181345	rs16995294	T	A	1736.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:23,69:0.75:92
chr20	49191228	rs1885177	A	C	5301.77	.	AC=1;AF=0.500;AN=2;DB;DP=370;set=Intersection	GT:AD:AF:DP	0/1:127,242:0.66:369
chr20	49194866	rs3215684	A	AT	2121.73	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:40,61:0.60:101
chr20	49210953	rs914458	G	C	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr20	49214156	rs6020624	A	G	7945.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr20	49225953	rs73615305	A	G	6073.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr20	49227294	rs4811083	T	C	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr20	49227544	rs144167038	G	GGGCTTAGTGCCGGGCC	11257.73	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr20	49236478	rs6122953	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:136,61:0.31:197
chr20	49354351	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.251;ClippingRankSum=0.000;DP=43;ExcessHet=3.0103;FS=1.588;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=1.608;QD=1.19;ReadPosRankSum=1.319;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:29,12:0.29:41
chr20	49367076	rs6020721	T	G	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:31,52:0.63:83
chr20	49411698	rs2272962	G	T	594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=4.692;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.806;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:91,43:0.32:134
chr20	49434669	rs5841815	TA	T	274.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.965;ClippingRankSum=0.000;DB;DP=187;ExcessHet=3.0103;FS=0.690;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.54;ReadPosRankSum=1.723;SOR=0.594;set=HC	GT:AD:AF:DP	0/1:130,48:0.27:178
chr20	49448452	rs11905485	T	C	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chr20	49448800	.	CT	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.17;ReadPosRankSum=0.191;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:22,11:0.33:33
chr20	49507892	rs761240	T	G	1825.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr20	49620783	rs1054268	G	T	2601.77	.	AC=1;AF=0.500;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	0/1:344,154:0.31:498
chr20	49621149	rs6122993	T	C	2406.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.285;ClippingRankSum=0.000;DB;DP=406;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.97;ReadPosRankSum=-1.896;SOR=0.705;set=HC	GT:AD:AF:DP	0/1:268,135:0.33:403
chr20	49621399	rs4811110	G	C	687.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:99,41:0.29:140
chr20	50015107	rs11086333	TAA	T	926.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:2,34:0.94:36
chr20	50015300	rs11478012	GA	G	1038.73	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:43,71:0.62:114
chr20	50071258	rs228840	A	G	1926.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr20	50092027	rs6013193	T	G	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:71,25:0.26:96
chr20	50092287	rs6021231	T	C	133.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr20	50223975	rs2273090	G	T	761.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:29,35:0.55:64
chr20	50224161	rs2273089	C	T	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	50224206	rs3818004	G	A	1810.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr20	50225206	rs3827032	G	A	2562.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:50,104:0.68:154
chr20	50225235	rs6021312	G	A	3188.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr20	50230462	rs2235863	A	G	3631.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	50238545	rs2235862	A	G	5319.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr20	50241714	rs2235859	C	A	3676.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr20	50244098	rs2426317	T	C	4144.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	50255762	rs2426333	T	C	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	50255849	rs6063682	A	C	1496.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.027;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.991;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.99;ReadPosRankSum=-0.043;SOR=0.985;set=HC	GT:AD:AF:DP	0/1:38,69:0.64:107
chr20	50256107	rs2426334	T	C	345.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr20	50273749	rs6021355	G	A	3356.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:50,144:0.74:194
chr20	50286484	rs5841856	T	TA	2241.73	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:18,128:0.88:146
chr20	50287553	rs6013248	G	A	954.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:12,37:0.76:49
chr20	50287736	rs2255341	C	T	4377.77	.	AC=1;AF=0.500;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	0/1:410,242:0.37:652
chr20	50287790	rs2255342	A	G	17686.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,680:1.00:680
chr20	50287925	rs2255358	A	G	3870.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr20	50290654	rs6091346	T	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr20	50305755	rs6067898	G	A	9763.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.799;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=25.49;ReadPosRankSum=-0.300;SOR=0.819;set=HC	GT:AD:AF:DP	0/1:129,254:0.66:383
chr20	50305761	rs6067899	G	A	9531.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.140;ClippingRankSum=0.000;DB;DP=355;ExcessHet=3.0103;FS=3.734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.93;ReadPosRankSum=-1.000;SOR=0.895;set=HC	GT:AD:AF:DP	0/1:116,238:0.67:354
chr20	50310466	rs6021389	T	C	5667.77	.	AC=1;AF=0.500;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	0/1:108,266:0.71:374
chr20	50310483	rs143733288	A	ATC	10832.73	.	AC=1;AF=0.500;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	0/1:106,266:0.72:372
chr20	50310709	rs6013259	G	A	1950.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:51,86:0.63:137
chr20	50314200	rs1205690	A	G	1296.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:25,51:0.67:76
chr20	50329416	rs1205698	T	C	1748.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:39,74:0.65:113
chr20	50329704	rs1205699	G	A	1779.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:38,76:0.67:114
chr20	50342555	rs1205709	C	T	1408.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:13,53:0.80:66
chr20	50384821	rs3746416	A	G	1119.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=227;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=-1.191;SOR=0.620;set=HC	GT:AD:AF:DP	0/1:154,73:0.32:227
chr20	50407162	rs6021437	T	C	2773.77	.	AC=1;AF=0.500;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	0/1:319,159:0.33:478
chr20	50407502	rs6126344	A	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.204;ClippingRankSum=0.000;DB;DP=220;ExcessHet=3.0103;FS=5.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.57;ReadPosRankSum=1.942;SOR=1.094;set=HC	GT:AD:AF:DP	0/1:156,63:0.29:219
chr20	50408482	rs6013281	A	G	8551.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	50668746	rs201746789	CTTTATATTTATATA	C	99.25	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=33.08;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr20	50713652	rs10715971	TA	T	8277.73	.	AC=2;AF=1.00;AN=2;DB;DP=448;set=Intersection	GT:AD:AF:DP	1/1:9,410:0.98:419
chr20	50713992	rs11309611	AT	A	165.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=4.866;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.14;ReadPosRankSum=1.870;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr20	50721106	rs62216874	G	C	628.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=4.969;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-1.076;SOR=0.358;set=HC	GT:AD:AF:DP	0/1:129,40:0.24:169
chr20	50734114	rs148552378	C	T	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=10.977;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=3.12;ReadPosRankSum=1.742;SOR=2.699;set=HC	GT:AD:AF:DP	0/1:45,12:0.21:57
chr20	50734238	rs67904269	T	C	1529.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.338;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.937;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=0.232;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:200,97:0.33:297
chr20	50734367	rs2180366	T	C	252.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:30,13:0.30:43
chr20	50775605	rs6021760	G	C	1188.77	.	AC=1;AF=0.500;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	0/1:109,65:0.37:174
chr20	50777026	rs3818198	A	G	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:76,31:0.29:107
chr20	50781298	rs72411807	T	TAA	722.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.569;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=3.284;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.491;QD=5.02;ReadPosRankSum=0.548;SOR=0.357;set=HC	GT:AD:AF:DP	0/1:93,51:0.35:144
chr20	50781725	rs6021770	G	A	1412.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	0/1:126,77:0.38:203
chr20	50782102	rs2038429	T	C	278.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:22,14:0.39:36
chr20	50782303	rs6021771	A	G	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:34,25:0.42:59
chr20	50782343	rs6021772	C	A	955.77	.	AC=1;AF=0.500;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	0/1:84,51:0.38:135
chr20	50782608	rs2273472	G	T	562.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:36,28:0.44:64
chr20	51870849	rs739870	T	C	1884.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.113;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.831;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.71;ReadPosRankSum=0.113;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:283,117:0.29:400
chr20	52557949	rs72548465	G	GTT	3030.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.348;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=0.966;MLEAC=1;MLEAF=0.500;MQ=61.61;MQRankSum=2.008;QD=32.59;ReadPosRankSum=-1.483;SOR=0.855;set=HC	GT:AD:AF:DP	0/1:20,73:0.78:93
chr20	52557950	.	T	TTTGTGTGTGCGCGC	2994	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=26;MQ=61.23;NF=18;NR=21;PP=2994;QD=20;SC=TGTGTGTGTGTGTGTGTGCGC;SbPval=0.41;Source=Platypus;TC=47;TCF=20;TCR=27;TR=39;WE=52557966;WS=52557924;set=Platypus	GT:AD:AF:DP	0/1:8,39:0.83:47
chr20	52557958	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.39;FR=0.5000;HP=2;HapScore=1;MGOF=10;MMLQ=23;MQ=61.06;NF=32;NR=22;PP=2962;QD=20;SC=TGTGTGTGTGCGCGTGTGTGT;SbPval=0.43;Source=Platypus;TC=82;TCF=51;TCR=31;TR=54;WE=52557966;WS=52557924;set=Platypus	GT:AD:AF:DP	0/1:28,54:0.66:82
chr20	52557958	.	C	CGCGCGTGTGTGT	3540.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.946;MLEAC=1;MLEAF=0.500;MQ=61.76;MQRankSum=2.260;QD=34.38;ReadPosRankSum=-0.411;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:23,80:0.78:103
chr20	52558099	rs6013842	T	G	1532.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:15,63:0.81:78
chr20	52592140	rs11474654	G	GTA	220.73	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:28,12:0.30:40
chr20	52601788	rs73140338	G	A	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	0/1:7,6:0.46:13
chr20	52609342	rs73124072	T	C	409.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:10,16:0.62:26
chr20	52611427	rs146234679	TACACACAC	T,TACACACACACACAC	4002.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=123;set=Intersection	GT:AF:DP	1/2:0.39,0.61:114
chr20	52611457	rs73124075	T	C	3180.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DB;DP=197;ExcessHet=3.0103;FS=1.145;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=-1.233;QD=16.23;ReadPosRankSum=-2.029;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:77,119:0.61:196
chr20	52611540	rs208381	C	A	4711.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.915;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=-1.442;QD=14.91;ReadPosRankSum=1.135;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:102,214:0.68:316
chr20	52645534	rs466264	T	C	2484.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr20	52674537	.	AT	A	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.231;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.94;ReadPosRankSum=-0.383;SOR=0.339;set=HC	GT:AD:AF:DP	0/1:23,17:0.42:40
chr20	52674615	rs465184	A	G	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr20	52675188	rs394732	G	T	388.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:67,26:0.28:93
chr20	52684924	rs6068765	C	A	3082.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:112,144:0.56:256
chr20	52685084	rs290446	T	C	534.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chr20	52779082	rs6127119	C	T	744.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:12,28:0.70:40
chr20	52781091	rs6068816	C	T	3476.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.381;ClippingRankSum=0.000;DB;DP=281;ExcessHet=3.0103;FS=0.929;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.51;ReadPosRankSum=1.039;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:111,167:0.60:278
chr20	52781251	rs2762939	G	C	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chr20	52781264	rs6013905	T	C	362.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:16,18:0.53:34
chr20	52782438	rs4809958	T	G	2834.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:61,127:0.68:188
chr20	52840743	rs11472518	C	CTT,CTTT	2595.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=1.045;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=18.54;ReadPosRankSum=1.285;SOR=0.669;set=HC	GT:AD:AF:DP	1/2:24,71,45:0.51,0.32:140
chr20	54578843	rs422330	C	G	3343.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	54823779	rs13044293	G	T	5463.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr20	54935064	rs76529327	G	T	384.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:54,22:0.29:76
chr20	54935242	rs17362677	A	T	2076.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.418;ClippingRankSum=0.000;DB;DP=509;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=-0.358;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:370,137:0.27:507
chr20	54940356	rs17362970	T	C	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.61;ReadPosRankSum=1.022;SOR=0.800;set=HC	GT:AD:AF:DP	0/1:48,21:0.30:69
chr20	54940427	rs111968423	A	G	210.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=6.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.024;SOR=1.954;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chr20	54940436	rs60905780	G	C	184.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.600;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=3.873;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.37;ReadPosRankSum=1.213;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chr20	54941124	rs6099114	T	C	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DB;DP=260;ExcessHet=3.0103;FS=2.268;MLEAC=1;MLEAF=0.500;MQ=59.91;MQRankSum=-3.503;QD=0.80;ReadPosRankSum=-1.981;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:221,36:0.14:257
chr20	54941140	rs6099115	C	T	208.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=269;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.044;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:228,39:0.15:267
chr20	54945783	rs10485805	A	G	577.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:71,34:0.32:105
chr20	54956707	rs6024840	A	G	384.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.42;ReadPosRankSum=-0.866;SOR=0.634;set=HC	GT:AD:AF:DP	0/1:47,24:0.34:71
chr20	54959296	rs2298016	G	C	245.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:26,15:0.37:41
chr20	54961463	rs1047972	T	C	5005.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr20	54961541	rs2273535	A	T	1442.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.026;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.463;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.84;ReadPosRankSum=-1.109;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:211,87:0.29:298
chr20	54963149	rs67542863	C	CGACAAGACCAACCTCCATGTGGGTTTATAAATGTGAATGAGATTACAGATTATTCAATTTA	2842.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=118.45;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr20	54974424	rs2426617	C	A	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr20	55025512	rs6024884	C	G	664.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:22,31:0.58:53
chr20	55025762	rs6069753	G	A	1795.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chr20	55028167	rs2870738	G	A	1683.77	.	AC=1;AF=0.500;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	0/1:245,102:0.29:347
chr20	55033476	rs3746623	C	G	2522.77	.	AC=1;AF=0.500;AN=2;DB;DP=459;set=Intersection	GT:AD:AF:DP	0/1:311,145:0.32:456
chr20	55033635	rs3746624	C	T	1811.77	.	AC=1;AF=0.500;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	0/1:231,105:0.31:336
chr20	55033647	rs3746625	T	C	1793.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:213,103:0.33:316
chr20	55033713	rs3746626	G	A	1563.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:184,90:0.33:274
chr20	55033856	rs4811697	A	C	555.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.83;ReadPosRankSum=-0.592;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:81,34:0.30:115
chr20	55045632	rs6024898	G	A	1821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;ClippingRankSum=0.000;DB;DP=340;ExcessHet=3.0103;FS=2.510;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=0.920;SOR=0.837;set=HC	GT:AD:AF:DP	0/1:230,108:0.32:338
chr20	55045843	rs6014740	T	C	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:84,37:0.31:121
chr20	55048283	rs6024901	A	G	186.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.561;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.495;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:10,9:0.47:19
chr20	55048496	rs11471796	T	TGAG	3708.73	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	55049908	rs1474890	A	G	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:69,41:0.37:110
chr20	55070268	rs34552628	A	T	3480.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:111,157:0.59:268
chr20	55070539	rs3827107	G	C	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:12,31:0.72:43
chr20	55071620	rs6014752	T	G	103.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:31,8:0.21:39
chr20	55071639	rs6069763	A	G	854.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:11,33:0.75:44
chr20	55072472	rs6024911	A	G	8181.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr20	55088404	rs1059768	A	G	3341.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr20	55108418	rs41311045	C	T	1152.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:126,60:0.32:186
chr20	55108617	rs3209183	C	A	4953.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr20	55111371	rs2296130	G	A	2244.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:68,103:0.60:171
chr20	55205661	rs6025019	C	A	752.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:12,34:0.74:46
chr20	55212711	rs6025024	T	G	474.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:18,22:0.55:40
chr20	55213082	rs1720	G	A	2558.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:47,113:0.71:160
chr20	55800937	rs6070031	C	T	7305.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chr20	55918014	rs2236330	A	G	52.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:11,4:0.27:15
chr20	55929881	rs4811837	T	C	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230;ClippingRankSum=0.000;DB;DP=374;ExcessHet=3.0103;FS=1.936;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.06;ReadPosRankSum=0.873;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:270,101:0.27:371
chr20	56083606	rs55924405	T	C	2789.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:73,121:0.62:194
chr20	56089869	rs11086612	GT	G	2678.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.330;ClippingRankSum=0.000;DB;DP=616;ExcessHet=3.0103;FS=0.529;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.694;QD=4.80;ReadPosRankSum=-0.861;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:316,242:0.43:558
chr20	56098070	rs11477755	GA	G	1074.73	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:128,64:0.33:192
chr20	56098733	rs6025606	T	C	2056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.079;ClippingRankSum=0.000;DB;DP=450;ExcessHet=3.0103;FS=1.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-1.187;SOR=0.809;set=HC	GT:AD:AF:DP	0/1:321,124:0.28:445
chr20	56099110	rs147244405	C	T	11116.77	.	AC=1;AF=0.500;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	0/1:197,478:0.71:675
chr20	56099114	rs6070128	C	G	3356.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.103;ClippingRankSum=0.000;DB;DP=667;ExcessHet=3.0103;FS=1.933;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.06;ReadPosRankSum=-1.192;SOR=0.574;set=HC	GT:AD:AF:DP	0/1:470,193:0.29:663
chr20	56099305	rs11699220	G	A	637.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:53,32:0.38:85
chr20	56131053	rs17496809	G	A	284.77	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr20	56136536	rs1042521	A	G	2170.73	.	AC=1;AF=0.500;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	0/1:278,129:0.32:407
chr20	56137798	rs1062600	G	A	2480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.166;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=0.507;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=0.000;QD=10.38;ReadPosRankSum=-0.269;SOR=0.651;set=HC	GT:AD:AF:DP	0/1:164,75:0.31:239
chr20	56137807	rs1042523	A	G	2438.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.256;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.25;ReadPosRankSum=0.956;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:168,70:0.29:238
chr20	56137834	rs1062601	A	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	0/1:182,78:0.30:260
chr20	56137895	rs707555	G	C	1252.77	.	AC=1;AF=0.500;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	0/1:147,70:0.32:217
chr20	56138040	rs2070755	G	C	1528.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:156,78:0.33:234
chr20	56138744	rs45603039	G	A	2335.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=4.939;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.24;ReadPosRankSum=2.105;SOR=0.497;set=HC	GT:AD:AF:DP	0/1:55,109:0.66:164
chr20	56139403	rs2070756	T	C	2345.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.962;ClippingRankSum=0.000;DB;DP=407;ExcessHet=3.0103;FS=1.174;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.78;ReadPosRankSum=0.651;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:269,137:0.34:406
chr20	56140980	rs1042531	T	G	212.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=3.563;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.91;ReadPosRankSum=-0.910;SOR=0.202;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chr20	56179422	rs6064572	C	A	1283.77	.	AC=1;AF=0.500;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	0/1:192,77:0.29:269
chr20	56179586	rs6123710	G	A	2953.77	.	AC=1;AF=0.500;AN=2;DB;DP=439;set=Intersection	GT:AD:AF:DP	0/1:276,163:0.37:439
chr20	56179875	rs8118279	A	G	842.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:18,34:0.65:52
chr20	56182183	rs4811888	G	C	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	0/1:59,112:0.65:171
chr20	56185209	rs41275646	G	A	887.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chr20	56186884	rs2865394	T	C	8942.77	.	AC=2;AF=1.00;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr20	56190634	rs2073145	C	T	5111.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr20	56190961	.	G	A	857.77	.	AC=1;AF=0.500;AN=2;DP=48;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr20	56191172	rs11468882	CAG	C	19581.73	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr20	56227121	rs61744856	T	C	2897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;ClippingRankSum=0.000;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.35;ReadPosRankSum=-0.123;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:82,135:0.62:217
chr20	56227514	rs6025698	T	C	4004.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:83,189:0.69:272
chr20	56227532	rs6025699	T	C	1373.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262;ClippingRankSum=0.000;DB;DP=264;ExcessHet=3.0103;FS=4.490;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.22;ReadPosRankSum=-1.714;SOR=0.468;set=HC	GT:AD:AF:DP	0/1:177,86:0.33:263
chr20	56227589	rs41314918	C	G	3125.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:64,142:0.69:206
chr20	56227673	rs73302914	G	A	885.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:18,37:0.67:55
chr20	56228019	rs8183538	G	C	615.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:73,34:0.32:107
chr20	56228026	rs6064578	C	A	2030.77	.	AC=1;AF=0.500;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	0/1:39,87:0.69:126
chr20	56228151	rs6070204	G	A	5235.77	.	AC=1;AF=0.500;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	0/1:129,237:0.65:366
chr20	56228272	rs76231217	G	C	2141.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:41,101:0.71:142
chr20	56228283	rs78877868	C	T	2094.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:30,89:0.75:119
chr20	56228302	rs77490913	G	A	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:20,68:0.77:88
chr20	56228323	rs115428313	G	A	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.73;ReadPosRankSum=-0.283;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:18,45:0.71:63
chr20	56228323	.	GCA	ACG	1679	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.5000;HP=2;HapScore=1;MGOF=32;MMLQ=23;MQ=60.0;NF=9;NR=31;PP=1679;QD=43.3116968716;SC=GGACGTGAGCGCAATCACCTC;SbPval=0.6;Source=Platypus;TC=59;TCF=14;TCR=45;TR=40;WE=56228333;WS=56228313;set=Platypus	GT:AD:AF:DP	1/0:19,40:0.68:59
chr20	56228325	rs74883909	A	G	1746.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.889;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=1.321;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.61;ReadPosRankSum=-0.193;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:17,42:0.71:59
chr20	56726107	rs6070358	C	T	9194.77	.	AC=2;AF=1.00;AN=2;DB;DP=344;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr20	56793546	rs583987	A	G	4753.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	56793706	rs584855	G	A	9789.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;MQ=60.03;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr20	56793764	rs1192511	G	A	6314.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr20	56796267	rs521615	C	T	592.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	56803676	.	C	CCCG	475.73	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:25,14:0.36:39
chr20	56807969	rs3818744	A	G	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	56811400	rs474212	C	A	949.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:4,45:0.92:49
chr20	56820702	rs595292	G	T	5079.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr20	56820880	rs3746406	C	T	11932.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr20	56821127	rs3746405	A	G	4546.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr20	56822236	rs1541117	C	A	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr20	56822536	rs4811972	G	A	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	56823391	.	TTTTTTTTA	T	121.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.522;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.87;ReadPosRankSum=1.253;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:20,5:0.20:25
chr20	56823395	rs518929	T	A	430.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:5,20:0.80:25
chr20	56825826	rs2282205	A	C	513.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr20	56826934	rs6064631	T	A	3134.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr20	56838389	rs6128295	A	G	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr20	56846580	rs6015238	T	A	1221.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.137;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=22.21;ReadPosRankSum=1.944;SOR=1.654;set=HC	GT:AD:AF:DP	1/1:2,53:0.96:55
chr20	56847816	rs6123789	T	C	2285.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:44,101:0.70:145
chr20	56861637	rs6026181	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	56884186	rs483569	T	G	358.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr20	56886062	rs542165	A	G	2730.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140;ClippingRankSum=0.000;DB;DP=398;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=2.252;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:244,152:0.38:396
chr20	57009796	rs2234487	C	T	277.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,14:0.40:35
chr20	57011383	rs201039529	CTTTTTTTTTTTTTT	C	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.921;ClippingRankSum=-0.000;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=20.59;ReadPosRankSum=-2.369;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chr20	57244493	rs2296524	G	A	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.34;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,194:1.00:194
chr20	57246480	rs11474130	T	TTTA	1629.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.83;QD=44.05;SOR=1.432;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	57246491	rs35720492	TGG	T	1517.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.42;QD=43.36;SOR=1.885;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr20	57266592	rs6128401	C	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr20	57266700	rs6123822	T	C	1352.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	57266749	rs11471424	CTTTT	C	2869.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.343;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=3.188;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=29.58;ReadPosRankSum=0.814;SOR=0.416;set=HC	GT:AD:AF:DP	1/1:4,93:0.96:97
chr20	57266781	rs6128402	C	T	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.904;set=HC	GT:AD:AF:DP	1/1:0,186:1.00:186
chr20	57266913	rs6123823	T	C	4806.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr20	57267942	rs6092682	T	C	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=2.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.19;ReadPosRankSum=-2.215;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:27,42:0.61:69
chr20	57268867	rs3746396	C	A	16982.77	.	AC=1;AF=0.500;AN=2;DB;DP=1142;set=Intersection	GT:AD:AF:DP	0/1:367,771:0.68:1138
chr20	57268994	rs6100166	G	C	2505.77	.	AC=1;AF=0.500;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	0/1:39,110:0.74:149
chr20	57273545	rs6092683	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:43,57:0.57:100
chr20	57273885	rs2296526	T	C	4120.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:107,180:0.63:287
chr20	57274077	rs6092684	T	A	704.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:14,26:0.65:40
chr20	57274151	rs2296528	G	C	1757.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:35,76:0.68:111
chr20	57275949	rs6070554	A	C	3195.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	57280575	rs6100174	T	C	3098.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:56,147:0.72:203
chr20	57288744	rs1570894	G	A	993.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:8,45:0.85:53
chr20	57290347	rs6026468	C	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:34,39:0.53:73
chr20	57292888	rs2426776	G	A	6251.77	.	AC=1;AF=0.500;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	0/1:152,285:0.65:437
chr20	57293089	rs6026470	A	G	6674.77	.	AC=1;AF=0.500;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	0/1:179,289:0.62:468
chr20	57293118	rs2426777	T	C	13413.77	.	AC=1;AF=0.500;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	0/1:193,334:0.63:527
chr20	57293124	rs10470038	A	AG	13426.73	.	AC=1;AF=0.500;AN=2;DB;DP=533;MQ=60.12;set=Intersection	GT:AD:AF:DP	0/1:197,336:0.63:533
chr20	57293350	rs12480759	G	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	0/1:42,89:0.68:131
chr20	57299030	rs201658287	GGAGGAGGAA	G	3114.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=12.927;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=1.237;QD=25.12;ReadPosRankSum=1.121;SOR=1.501;set=HC	GT:AD:AF:DP	0/1:41,83:0.67:124
chr20	57415110	rs1800900	A	G	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.560;SOR=0.769;set=HC	GT:AD:AF:DP	0/1:80,31:0.28:111
chr20	57415995	rs1800905	A	G	1620.77	.	AC=1;AF=0.500;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	0/1:158,87:0.36:245
chr20	57430477	rs73306256	C	G	1663.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:30,72:0.71:102
chr20	57474720	rs35714680	GCA	G	306.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr20	57475191	rs13831	A	G	550.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	57478448	rs2295583	A	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:23,13:0.36:36
chr20	57478807	rs7121	C	T	4939.77	.	AC=1;AF=0.500;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	0/1:122,226:0.65:348
chr20	57556295	rs151333	C	T	1730.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr20	57565943	rs163782	G	C	8628.77	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr20	57566637	rs149265	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr20	57569816	rs7341	G	T	6006.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:1,227:1.00:228
chr20	57570568	rs13720	G	A	1530.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr20	57570854	rs3787492	G	A	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	57571763	rs9760	A	G	13016.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.23;SOR=0.701;set=HC	GT:AD:AF:DP	1/1:0,516:1.00:516
chr20	57572614	rs417847	T	C	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr20	57572675	rs163785	A	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr20	57582285	rs71181993	C	CCGGCCT	1386.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	57599016	rs163777	T	G	6281.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr20	57613704	rs61329417	CA	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.444;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.20;ReadPosRankSum=-0.668;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:22,21:0.49:43
chr20	57767043	rs259984	G	C	7797.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr20	57767727	rs61743785	T	A	9546.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr20	57768399	rs442091	T	C	6324.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr20	57768743	rs56057707	C	T	9106.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,328:1.00:328
chr20	57769140	rs55786258	G	C	7541.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr20	57769854	rs454356	A	G	2765.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	57781799	rs141578872	TGGG	T	626.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr20	57828914	rs56738506	T	TC	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=14.443;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.04;ReadPosRankSum=1.085;SOR=3.596;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chr20	57828923	rs259957	A	C	258.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=6.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.24;ReadPosRankSum=-0.518;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:17,11:0.39:28
chr20	57829301	rs259956	T	C	5149.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:106,226:0.68:332
chr20	57829821	rs3041675	C	CTT	2651.73	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr20	58179932	rs11477768	CT	C	299.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=0.459;SOR=0.607;set=HC	GT:AD:AF:DP	0/1:56,43:0.43:99
chr20	58330128	rs1182477	G	C	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:24,46:0.66:70
chr20	58342130	rs2426831	T	A	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	58411441	rs2426849	T	C	209.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	58420336	rs1416388	G	A	1906.77	.	AC=1;AF=0.500;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	0/1:269,119:0.31:388
chr20	58425413	rs2865768	C	T	3348.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr20	58444089	rs41304425	T	C	405.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:5,15:0.75:20
chr20	58471370	rs6513467	A	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:4,5:0.56:9
chr20	58497481	.	TA	T	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=-1.022;SOR=0.654;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chr20	58558228	rs77838586	T	C	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr20	58644995	rs6071100	T	C	759.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.255;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=3.643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.51;ReadPosRankSum=0.142;SOR=0.427;set=HC	GT:AD:AF:DP	0/1:93,45:0.33:138
chr20	59053195	.	C	T	2998.77	.	AC=1;AF=0.500;AN=2;DP=549;set=Intersection	GT:AD:AF:DP	0/1:373,174:0.32:547
chr20	59431577	rs36227877	TACACAC	T	1468.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.588;QD=18.59;ReadPosRankSum=-1.306;SOR=0.675;set=HC	GT:AD:AF:DP	0/1:37,42:0.53:79
chr20	59431609	rs57254179	CA	C	385.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.879;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.919;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=-1.192;QD=4.59;ReadPosRankSum=-1.667;SOR=0.906;set=HC	GT:AD:AF:DP	0/1:57,27:0.32:84
chr20	59431611	.	CACACACA	C	382.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.059;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=0.898;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=-1.161;QD=4.40;ReadPosRankSum=-1.582;SOR=0.813;set=HC	GT:AD:AF:DP	0/1:60,27:0.31:87
chr20	59829847	rs3752252	C	T	7304.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chr20	59908320	rs72064063	TACAC	T,TACACAC	6448.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=286;set=Intersection	GT:AF:DP	1/2:0.76,0.19:203
chr20	59908349	rs11086735	A	G	6371.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:45,152:0.77:197
chr20	59908377	rs11908491	T	C	2459.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:23,98:0.81:121
chr20	60145618	rs111228520	CT	C	792.73	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:23,35:0.60:58
chr20	60145672	rs2252560	T	G	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:49,74:0.60:123
chr20	60145710	rs73136668	A	G	2147.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.348;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=1.287;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.68;ReadPosRankSum=-0.255;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:60,97:0.62:157
chr20	60145887	rs73136669	T	G	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:21,24:0.53:45
chr20	60293919	rs2892179	C	A	18108.77	.	AC=2;AF=1.00;AN=2;DB;DP=684;set=Intersection	GT:AD:AF:DP	1/1:0,681:1.00:681
chr20	60294246	rs11440327	A	AT	2029.73	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:84,129:0.61:213
chr20	60485327	rs1776237	C	T	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	60485627	rs2427240	C	T	6460.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr20	60498832	rs11484270	A	AC	1645.73	.	AC=1;AF=0.500;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:29,60:0.67:89
chr20	60503350	rs6142884	A	G	19886.77	.	AC=1;AF=0.500;AN=2;DB;DP=1432;set=Intersection	GT:AD:AF:DP	0/1:513,913:0.64:1426
chr20	60509387	rs3827115	T	G	890.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:47,44:0.48:91
chr20	60512028	rs3761222	G	C	2294.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:39,95:0.71:134
chr20	60572663	rs2296081	C	A	1353.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:118,74:0.39:192
chr20	60574216	rs2296083	C	T	864.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.313;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=2.317;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.60;ReadPosRankSum=-0.448;SOR=0.475;set=HC	GT:AD:AF:DP	0/1:82,49:0.37:131
chr20	60575830	rs2281733	G	A	875.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:76,45:0.37:121
chr20	60582540	rs2281735	T	A	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:65,39:0.38:104
chr20	60584072	rs2296086	T	G	1239.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564;ClippingRankSum=0.000;DB;DP=223;ExcessHet=3.0103;FS=0.521;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.58;ReadPosRankSum=0.247;SOR=0.645;set=HC	GT:AD:AF:DP	0/1:147,75:0.34:222
chr20	60585322	rs112501116	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,33:0.29:114
chr20	60587836	rs3818344	T	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:22,16:0.42:38
chr20	60588049	rs2273991	G	C	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;ClippingRankSum=0.000;DB;DP=396;ExcessHet=3.0103;FS=1.907;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=-0.891;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:293,101:0.26:394
chr20	60639883	.	T	C	25	.	AC=2;AF=1.00;AN=2;BRF=0.31;FR=0.9998;HP=3;HapScore=2;MGOF=0;MMLQ=23;MQ=60.0;NF=0;NR=2;PP=25;QD=29.8856062736;SC=CGGGCCCGGGTTGGCCGCTGA;SbPval=1.0;Source=Platypus;TC=2;TCF=0;TCR=2;TR=2;WE=60639891;WS=60639873;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr20	60640305	rs200074661	TGCCAGG	T	608.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr20	60704117	rs4925345	A	G	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	60733639	rs6142963	A	G	1426.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:29,50:0.63:79
chr20	60733672	rs6062094	C	T	2208.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:53,87:0.62:140
chr20	60735098	rs6121926	T	C	2864.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:65,129:0.66:194
chr20	60739079	rs56285165	G	A	1384.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:59,65:0.52:124
chr20	60739092	rs61598322	C	T	1689.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:66,78:0.54:144
chr20	60739353	rs146750123	GGGGCAAGGA	G	1740.73	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:11,43:0.80:54
chr20	60740362	rs6142964	G	A	1147.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:28,43:0.61:71
chr20	60740447	rs2295208	C	T	4273.77	.	AC=1;AF=0.500;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	0/1:121,187:0.61:308
chr20	60740584	rs60919036	CTGCGTGCTGGGCTCG	CCGTGCTGGGCTCG,C	12935.73	.	AC=1,0;AF=0.500,0.00;ALERT;AN=2;DB;DP=543;set=Intersection	GT:AF:DP	0/1:0.66:503
chr20	60740587	.	CGTGCTGGGCTCGA	C	12924.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.506;ClippingRankSum=0.000;DP=495;ExcessHet=3.0103;FS=2.677;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.16;ReadPosRankSum=1.263;SOR=0.923;set=HC	GT:AD:AF:DP	0/1:161,333:0.67:494
chr20	60740600	.	A	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.27;FR=0.5000;HP=2;HapScore=1;MGOF=2;MMLQ=23;MQ=60.0;NF=108;NR=130;PP=2962;QD=20;SC=GCTGGGCTCGAGCGTAAGCGC;SbPval=0.46;Source=Platypus;TC=363;TCF=159;TCR=204;TR=238;WE=60740608;WS=60740574;set=Platypus	GT:AD:AF:DP	1/0:125,238:0.66:363
chr20	60768615	rs6062133	G	A	501.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:64,28:0.30:92
chr20	60773684	rs4925355	C	T	2388.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:45,100:0.69:145
chr20	60775932	rs1972	C	T	1702.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:212,99:0.32:311
chr20	60791404	rs3787429	C	T	2767.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:43,117:0.73:160
chr20	60791969	rs146877490	G	A	3124.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:117,148:0.56:265
chr20	60831300	rs6089706	G	A	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:44,13:0.23:57
chr20	60848248	rs6061476	G	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr20	60854994	rs75562186	G	A	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:47,67:0.59:114
chr20	60855970	rs80225038	C	T	736.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:21,28:0.57:49
chr20	60856015	rs113246582	G	A	1769.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.389;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.72;ReadPosRankSum=-0.694;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:49,80:0.62:129
chr20	60859381	rs4925225	A	G	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr20	60859430	rs11306058	AT	A	490.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.108;QD=7.92;ReadPosRankSum=-1.075;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,42:0.68:62
chr20	60859486	rs4925226	A	G	1278.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr20	60861505	rs375911327	GA	G	154.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=0.229;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:136,45:0.25:181
chr20	60861782	rs2297592	A	G	530.77	.	AC=1;AF=0.500;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	0/1:54,28:0.34:82
chr20	60878683	rs11544169	A	G	6288.77	.	AC=1;AF=0.500;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	0/1:131,276:0.68:407
chr20	60879447	rs113337191	T	C	1046.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:26,41:0.61:67
chr20	60881330	rs2427273	G	A	2016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.756;ClippingRankSum=0.000;DB;DP=415;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.86;ReadPosRankSum=-0.303;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:289,126:0.30:415
chr20	60881643	rs2427274	T	C	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr20	60881780	rs2427275	T	C	5789.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	60882277	rs2427277	C	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr20	60882888	rs2427278	A	G	9369.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr20	60883273	rs2236523	A	C	2350.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr20	60884651	rs6143020	T	G	32.79	.	AC=1;AF=0.500;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	0/1:0,2:1.00:2
chr20	60884695	.	T	TGGGGGGGTGGGAGGGGGTGGG	308.75	.	AC=2;AF=1.00;AN=2;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	60885448	rs944897	A	G	12510.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,466:1.00:466
chr20	60887581	rs944895	G	A	7271.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:165,323:0.66:488
chr20	60887691	rs41307205	G	A	7871.77	.	AC=1;AF=0.500;AN=2;DB;DP=500;set=Intersection	GT:AD:AF:DP	0/1:153,347:0.69:500
chr20	60888921	rs34102933	G	A	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:70,33:0.32:103
chr20	60889313	rs72487383	A	C	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:76,53:0.41:129
chr20	60890375	rs6062210	C	T	628.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:13,25:0.66:38
chr20	60891288	rs2065578	A	G	2201.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr20	60892526	rs2427281	A	G	11126.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr20	60892692	rs6062216	C	T	836.77	.	AC=1;AF=0.500;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	0/1:56,41:0.42:97
chr20	60893458	rs73144993	A	G	306.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=2.406;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.471;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:70,24:0.26:94
chr20	60893506	rs113604626	T	G	1333.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:152,81:0.35:233
chr20	60894870	rs73149117	C	T	1695.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.493;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=1.949;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.97;ReadPosRankSum=2.091;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:237,104:0.30:341
chr20	60895738	rs6089346	A	G	1015.77	.	AC=1;AF=0.500;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	0/1:135,59:0.30:194
chr20	60897071	rs2274936	A	G	925.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:129,58:0.31:187
chr20	60897487	rs2274934	C	T	2075.77	.	AC=1;AF=0.500;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	0/1:182,106:0.37:288
chr20	60898505	rs2379128	C	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.40;ReadPosRankSum=1.076;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:20,12:0.38:32
chr20	60899206	rs2427283	C	T	1233.77	.	AC=1;AF=0.500;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	0/1:134,69:0.34:203
chr20	60900481	rs2427284	A	G	1925.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.155;ClippingRankSum=0.000;DB;DP=432;ExcessHet=3.0103;FS=0.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=-0.256;SOR=0.749;set=HC	GT:AD:AF:DP	0/1:314,117:0.27:431
chr20	60900579	rs2427285	C	A	2791.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.686;ClippingRankSum=0.000;DB;DP=568;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.233;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:401,165:0.29:566
chr20	60901986	rs875379	G	A	2996.77	.	AC=1;AF=0.500;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	0/1:366,180:0.33:546
chr20	60902214	rs944894	G	A	619.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:59,31:0.34:90
chr20	60902389	rs944893	G	A	3001.77	.	AC=1;AF=0.500;AN=2;DB;DP=556;set=Intersection	GT:AD:AF:DP	0/1:380,175:0.32:555
chr20	60902490	rs944892	C	T	7292.77	.	AC=1;AF=0.500;AN=2;DB;DP=1239;set=Intersection	GT:AD:AF:DP	0/1:821,413:0.33:1234
chr20	60902544	rs944891	A	C	8022.77	.	AC=1;AF=0.500;AN=2;DB;DP=1377;set=Intersection	GT:AD:AF:DP	0/1:915,458:0.33:1373
chr20	60902883	rs4925375	C	T	1636.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;ClippingRankSum=0.000;DB;DP=367;ExcessHet=3.0103;FS=1.377;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.47;ReadPosRankSum=0.423;SOR=0.796;set=HC	GT:AD:AF:DP	0/1:262,104:0.28:366
chr20	60904421	rs140984798	GCAGCCCAGCCCAGCC	G,GCAGCCCAGCC	2467.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.72,0.28:61
chr20	60904853	rs2427286	T	C	1952.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DB;DP=385;ExcessHet=3.0103;FS=1.297;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.07;ReadPosRankSum=-0.727;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:265,120:0.31:385
chr20	60905717	rs2095235	T	C	2726.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;ClippingRankSum=0.000;DB;DP=455;ExcessHet=3.0103;FS=0.547;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.03;ReadPosRankSum=0.220;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:294,158:0.35:452
chr20	60905878	rs3810548	A	G	936.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:100,55:0.35:155
chr20	60906055	rs73613564	C	T	3575.77	.	AC=1;AF=0.500;AN=2;DB;DP=479;set=Intersection	GT:AD:AF:DP	0/1:289,189:0.40:478
chr20	60906277	.	TG	T	208	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=7;HapScore=2;MGOF=53;MMLQ=22;MQ=55.52;NF=0;NR=10;PP=208;QD=22.9;SC=GGCGGTACGATGGGGGGGTGC;SbPval=1.0;Source=Platypus;TC=16;TCF=1;TCR=15;TR=10;WE=60906285;WS=60906267;set=Platypus	GT:AD:AF:DP	0/1:6,10:0.62:16
chr20	60907446	rs2151513	T	C	1121.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:89,57:0.39:146
chr20	60907675	rs6142734	G	A	2833.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:327,162:0.33:489
chr20	60908882	rs12481057	G	A	983.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:99,44:0.31:143
chr20	60908892	rs141833594	A	AGTGGG	1517.73	.	AC=1;AF=0.500;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	0/1:110,43:0.28:153
chr20	60908964	rs13044266	G	A	4927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.192;ClippingRankSum=0.000;DB;DP=440;ExcessHet=3.0103;FS=1.983;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.302;QD=11.22;ReadPosRankSum=-0.117;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:300,139:0.32:439
chr20	60908969	rs13042941	T	C	4910.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;ClippingRankSum=0.000;DB;DP=476;ExcessHet=3.0103;FS=1.247;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=3.029;QD=10.34;ReadPosRankSum=0.688;SOR=0.547;set=HC	GT:AD:AF:DP	0/1:330,145:0.31:475
chr20	60909060	rs13038331	A	G	2745.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.838;ClippingRankSum=0.000;DB;DP=601;ExcessHet=3.0103;FS=2.740;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.58;ReadPosRankSum=-1.721;SOR=0.882;set=HC	GT:AD:AF:DP	0/1:430,170:0.28:600
chr20	60909466	rs2379127	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:30,17:0.36:47
chr20	60909518	rs1105019	G	T	297.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:28,15:0.35:43
chr20	60909786	rs149378083	G	GTCAGGGC	827.73	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:12,24:0.67:36
chr20	60909809	.	C	CAGGGCTCAGGGCGAGGGCGAGGGCG	786.73	.	AC=1;AF=0.500;AN=2;DP=65;set=Intersection	GT:AD:AF:DP	0/1:31,16:0.34:47
chr20	60909974	rs12625368	T	C	815.77	.	AC=1;AF=0.500;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	0/1:82,40:0.33:122
chr20	60910344	rs73313222	G	A	2618.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:67,117:0.64:184
chr20	60911958	rs2890083	G	A	6563.77	.	AC=1;AF=0.500;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	0/1:623,372:0.37:995
chr20	60912683	rs2427289	T	C	2334.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.117;ClippingRankSum=0.000;DB;DP=435;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.39;ReadPosRankSum=-0.244;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:295,138:0.32:433
chr20	60913495	rs2151512	T	C	1592.77	.	AC=1;AF=0.500;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	0/1:181,87:0.32:268
chr20	60917294	rs4925380	G	A	135.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.475;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.24;ReadPosRankSum=-2.145;SOR=1.085;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chr20	60920624	rs4925385	A	G	543.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.132;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=0.899;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.25;ReadPosRankSum=-1.911;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:44,31:0.41:75
chr20	60920887	rs11204472	G	A	2216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.805;ClippingRankSum=0.000;DB;DP=309;ExcessHet=3.0103;FS=2.518;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.17;ReadPosRankSum=-1.109;SOR=0.622;set=HC	GT:AD:AF:DP	0/1:189,120:0.39:309
chr20	60921044	rs4925386	T	C	1175.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:103,61:0.37:164
chr20	60921643	rs4925229	T	C	9142.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:1,334:1.00:335
chr20	60921701	rs4925387	A	G	14447.77	.	AC=2;AF=1.00;AN=2;DB;DP=558;set=Intersection	GT:AD:AF:DP	1/1:1,556:1.00:557
chr20	60921896	rs4925388	A	G	13551.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;set=Intersection	GT:AD:AF:DP	1/1:0,513:1.00:513
chr20	60927349	rs483876	C	T	2933.77	.	AC=1;AF=0.500;AN=2;DB;DP=471;set=Intersection	GT:AD:AF:DP	0/1:297,171:0.37:468
chr20	60927412	rs624313	G	A	2458.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:309,146:0.32:455
chr20	60927482	rs482220	G	A	1197.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.472;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=1.185;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.81;ReadPosRankSum=0.734;SOR=0.808;set=HC	GT:AD:AF:DP	0/1:140,66:0.32:206
chr20	60927551	rs482010	A	G	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:42,25:0.37:67
chr20	60937437	rs114290713	C	T	4434.77	.	AC=1;AF=0.500;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	0/1:125,205:0.62:330
chr20	60937516	rs41284996	A	G	4693.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:112,213:0.66:325
chr20	60937597	rs477859	A	G	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr20	60941869	rs144826578	T	C	256.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr20	60962624	rs755726	T	C	9382.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:172,411:0.70:583
chr20	60966318	rs6089219	G	T	2981.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:79,123:0.61:202
chr20	60968547	rs41284972	A	G	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:60,128:0.68:188
chr20	60969886	rs2427309	G	T	382.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:19,16:0.46:35
chr20	60969929	rs2427310	C	G	768.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:26,39:0.60:65
chr20	60970123	rs2427311	A	G	2982.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:46,131:0.74:177
chr20	60971327	rs748037	A	C	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:28,60:0.68:88
chr20	60971510	rs61744285	T	C	7996.77	.	AC=1;AF=0.500;AN=2;DB;DP=562;MQ=60.02;set=Intersection	GT:AD:AF:DP	0/1:182,379:0.68:561
chr20	60989365	rs3810553	C	T	2531.77	.	AC=1;AF=0.500;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	0/1:78,112:0.59:190
chr20	60990075	rs911078	T	G	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:15,28:0.65:43
chr20	60990170	rs911079	C	T	1556.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:33,71:0.68:104
chr20	60990606	rs3810554	A	C	1179.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chr20	61039958	rs6061550	T	C	4180.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	61040453	rs6061243	C	G	3339.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.89;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr20	61040951	rs6587239	C	T	4039.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr20	61048549	rs41305803	G	A	13986.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,518:1.00:518
chr20	61143364	rs12625668	T	C	2302.77	.	AC=1;AF=0.500;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	0/1:81,100:0.55:181
chr20	61143487	rs3934574	T	C	10512.77	.	AC=1;AF=0.500;AN=2;DB;DP=740;set=Intersection	GT:AD:AF:DP	0/1:255,483:0.65:738
chr20	61143945	rs3934573	T	G	1416.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:17,56:0.77:73
chr20	61150928	rs12624794	A	G	1352.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:24,54:0.69:78
chr20	61162100	rs13040413	G	A	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chr20	61162267	rs6062251	T	C	1001.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.424;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=3.115;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.337;SOR=0.909;set=HC	GT:AD:AF:DP	0/1:206,69:0.25:275
chr20	61162423	rs6062250	T	C	912.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:104,51:0.33:155
chr20	61167517	rs6143065	C	T	105.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.804;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=0.382;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:29,9:0.24:38
chr20	61167632	rs11483745	G	GTTT	1217.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.321;ClippingRankSum=0.000;DB;DP=170;ExcessHet=3.0103;FS=0.778;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.47;ReadPosRankSum=-0.263;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:110,53:0.33:163
chr20	61273717	rs6122141	G	C	1888.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr20	61289958	rs2427369	G	A	3680.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr20	61292373	rs144381587	GAGCCCCC	GAGCCCCCAGCCCCC,G	1691.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=73;set=Intersection	GT:AF:DP	1/1:0.97:40
chr20	61326276	rs2427393	G	A	2079.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:29,82:0.74:111
chr20	61326380	rs2427394	C	T	14083.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,528:1.00:528
chr20	61326439	rs145607453	T	TCTGCACCTGCACCTGCAC	4349.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.523;ClippingRankSum=0.000;DB;DP=632;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=9.14;ReadPosRankSum=2.661;SOR=0.666;set=HC	GT:AD:AF:DP	0/1:361,115:0.24:476
chr20	61341286	rs3746780	A	G	12941.77	.	AC=2;AF=1.00;AN=2;DB;DP=478;set=Intersection	GT:AD:AF:DP	1/1:0,477:1.00:477
chr20	61428423	rs11696245	A	C	2402.77	.	AC=1;AF=0.500;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	0/1:336,144:0.30:480
chr20	61429925	rs2294982	C	G	1804.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=403;ExcessHet=3.0103;FS=0.587;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.50;ReadPosRankSum=-0.167;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:288,113:0.28:401
chr20	61430729	rs76839923	G	A	614.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:45,30:0.40:75
chr20	61436509	.	A	AC	160.74	.	AC=1;AF=0.500;AN=2;DP=10;set=Intersection	GT:AD:AF:DP	0/1:2,8:0.80:10
chr20	61439696	rs41282978	C	G	6349.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:161,292:0.64:453
chr20	61439708	rs760276	G	A	5433.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:140,248:0.64:388
chr20	61441035	rs2277772	G	A	5245.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:69,222:0.76:291
chr20	61441058	rs3833337	CAG	C	445.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.992;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=17.098;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=3.691;QD=2.13;ReadPosRankSum=-1.840;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:182,27:0.13:209
chr20	61441061	rs45585738	G	A	4264.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	0/1:27,172:0.86:199
chr20	61441797	rs2277771	A	G	3821.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:131,185:0.59:316
chr20	61442996	rs2075775	C	T	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	0/1:59,42:0.42:101
chr20	61443547	rs2075776	A	G	3620.77	.	AC=1;AF=0.500;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	0/1:104,175:0.63:279
chr20	61452705	rs3765461	C	G	566.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:79,33:0.29:112
chr20	61452837	rs117347229	G	A	7284.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:198,331:0.63:529
chr20	61453348	rs8114983	T	G	1228.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:116,62:0.35:178
chr20	61453549	rs2294988	G	A	3429.77	.	AC=1;AF=0.500;AN=2;DB;DP=528;set=Intersection	GT:AD:AF:DP	0/1:337,190:0.36:527
chr20	61456440	rs187176638	G	A	203.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.843;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=3.512;MLEAC=1;MLEAF=0.500;MQ=58.57;MQRankSum=0.938;QD=7.28;ReadPosRankSum=0.890;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:16,12:0.43:28
chr20	61456458	rs143853838	A	G	185.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.058;ClippingRankSum=-0.000;DB;DP=19;ExcessHet=3.0103;FS=2.363;MLEAC=1;MLEAF=0.500;MQ=57.50;MQRankSum=-0.566;QD=13.27;ReadPosRankSum=-0.343;SOR=1.863;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chr20	61458547	rs2249766	A	T	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chr20	61460338	rs6062700	C	T	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:22,11:0.33:33
chr20	61462004	.	A	AC	1271	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=10;HapScore=2;MGOF=41;MMLQ=28;MQ=55.99;NF=0;NR=19;PP=1271;QD=68.3684210526;SC=ACAGTCCCCCACCCCCATGAC;SbPval=1.0;Source=Platypus;TC=35;TCF=0;TCR=35;TR=19;WE=61462050;WS=61461994;set=Platypus	GT:AD:AF:DP	1/1:16,19:0.54:35
chr20	61462009	.	C	CCACCACAGTCCCCCACCCCCCACCCCAGTCCCCAAACCCCT	1371.73	.	AC=2;AF=1.00;AN=2;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=42.87;SOR=6.994;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	61462011	rs57884674	T	C	1335.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.88;QD=222.63;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	61462011	.	TG	CC	1626	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=41;MMLQ=28;MQ=54.53;NF=0;NR=20;PP=1626;QD=83.9733937431;SC=CCCACCCCCATGACAGTCCCC;SbPval=1.0;Source=Platypus;TC=21;TCF=0;TCR=21;TR=20;WE=61462050;WS=61461994;set=Platypus	GT:AD:AF:DP	1/0:1,20:0.95:21
chr20	61462012	rs61526618	G	C	220.78	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.06;QD=44.16;SOR=3.611;set=HC	GT:AD:AF:DP	0/1:0,5:1.00:5
chr20	61462028	.	C	CA	127.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.282;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.17;MQRankSum=1.282;QD=25.55;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr20	61462029	.	C	CCACAGTCCCCCACCCCCT	127.74	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.524;ClippingRankSum=-0.000;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.17;MQRankSum=1.282;QD=25.55;ReadPosRankSum=-1.282;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:1,4:0.80:5
chr20	61467701	rs3765462	G	A	4144.77	.	AC=1;AF=0.500;AN=2;DB;DP=712;set=Intersection	GT:AD:AF:DP	0/1:476,236:0.33:712
chr20	61467898	rs910152	G	C	5587.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr20	61468571	rs2294995	T	C	8281.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr20	61512606	rs910148	T	C	10854.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,405:1.00:405
chr20	61524133	rs2294998	C	T	7477.77	.	AC=1;AF=0.500;AN=2;DB;DP=613;set=Intersection	GT:AD:AF:DP	0/1:263,349:0.57:612
chr20	61524384	rs11362069	CT	C	386.73	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,29:0.71:41
chr20	61527480	rs755740	T	C	2414.77	.	AC=1;AF=0.500;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	0/1:60,93:0.61:153
chr20	61527563	rs2013097	T	C	7440.77	.	AC=1;AF=0.500;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	0/1:188,352:0.65:540
chr20	61528074	rs910149	T	C	3971.77	.	AC=1;AF=0.500;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	0/1:87,178:0.67:265
chr20	61528306	rs1883848	A	G	2980.77	.	AC=1;AF=0.500;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	0/1:70,135:0.66:205
chr20	61536938	rs2295000	G	A	2434.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.142;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=5.183;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.55;ReadPosRankSum=-0.457;SOR=1.066;set=HC	GT:AD:AF:DP	0/1:80,114:0.59:194
chr20	61572760	rs13039291	C	T	465.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chr20	61577275	rs2427452	T	C	2431.77	.	AC=1;AF=0.500;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	0/1:277,140:0.34:417
chr20	61584683	rs2277770	C	T	1641.77	.	AC=1;AF=0.500;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	0/1:35,71:0.67:106
chr20	61588159	rs2245341	A	G	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;ClippingRankSum=0.000;DB;DP=255;ExcessHet=3.0103;FS=5.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.756;SOR=1.129;set=HC	GT:AD:AF:DP	0/1:213,42:0.16:255
chr20	61588745	rs2427457	C	T	2209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659;ClippingRankSum=0.000;DB;DP=386;ExcessHet=3.0103;FS=2.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.75;ReadPosRankSum=-0.710;SOR=0.820;set=HC	GT:AD:AF:DP	0/1:252,132:0.34:384
chr20	61594493	rs3729555	G	A	6419.77	.	AC=1;AF=0.500;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	0/1:140,278:0.67:418
chr20	61594679	rs2427463	A	G	23110.77	.	AC=2;AF=1.00;AN=2;DB;DP=852;set=Intersection	GT:AD:AF:DP	1/1:0,847:1.00:847
chr20	61595537	rs2427464	A	G	5369.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.98;SOR=1.106;set=HC	GT:AD:AF:DP	1/1:0,199:1.00:199
chr20	61595636	rs2248900	C	T	4709.77	.	AC=1;AF=0.500;AN=2;DB;DP=379;set=Intersection	GT:AD:AF:DP	0/1:154,224:0.59:378
chr20	61597946	rs5842409	CT	C	22744.73	.	AC=2;AF=1.00;AN=2;DB;DP=628;set=Intersection	GT:AD:AF:DP	1/1:0,610:1.00:610
chr20	61598899	rs3746750	A	G	822.77	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:73,42:0.37:115
chr20	61640934	rs11281878	A	AGCGGCTCCGC	276.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:7,8:0.53:15
chr20	61711649	rs77448481	C	T	128.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chr20	61834695	rs6122103	G	A	3909.77	.	AC=1;AF=0.500;AN=2;DB;DP=665;set=Intersection	GT:AD:AF:DP	0/1:450,215:0.32:665
chr20	61847068	rs6090310	C	G	3714.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr20	61869223	rs6062855	T	C	3767.77	.	AC=1;AF=0.500;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	0/1:98,173:0.64:271
chr20	61869607	rs6010878	C	A	3444.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr20	61869826	rs2273487	C	T	4824.77	.	AC=1;AF=0.500;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	0/1:89,208:0.70:297
chr20	61870075	rs744590	C	T	3473.77	.	AC=1;AF=0.500;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	0/1:76,143:0.65:219
chr20	61870167	rs744591	C	A	10604.77	.	AC=1;AF=0.500;AN=2;DB;DP=752;set=Intersection	GT:AD:AF:DP	0/1:274,476:0.63:750
chr20	61870220	rs744592	T	C	16546.77	.	AC=1;AF=0.500;AN=2;DB;DP=1172;set=Intersection	GT:AD:AF:DP	0/1:390,779:0.67:1169
chr20	61870465	rs1075557	A	G	3548.77	.	AC=1;AF=0.500;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	0/1:71,164:0.70:235
chr20	61870605	rs3215649	T	TG	9001.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	61870634	rs1075556	A	G	3363.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:80,144:0.64:224
chr20	61870727	rs1077019	G	C	1746.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:159,91:0.36:250
chr20	61872905	rs1047826	A	G	7369.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr20	61873039	rs1047822	T	C	7352.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr20	61873080	rs1047819	T	A	2371.77	.	AC=1;AF=0.500;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	0/1:66,112:0.63:178
chr20	61875497	rs2236186	A	C	5993.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr20	61875909	rs73153507	C	T	840.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.115;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=2.368;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.83;ReadPosRankSum=-1.345;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:230,67:0.23:297
chr20	61878632	rs2236193	G	A	1255.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:28,53:0.65:81
chr20	61878649	rs4809512	T	G	1760.77	.	AC=1;AF=0.500;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	0/1:33,72:0.69:105
chr20	61878950	rs872808	A	C	5691.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:193,254:0.57:447
chr20	61879009	rs2236194	G	T	2485.77	.	AC=1;AF=0.500;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	0/1:232,133:0.36:365
chr20	61880169	rs1129659	T	G	8220.77	.	AC=1;AF=0.500;AN=2;DB;DP=595;set=Intersection	GT:AD:AF:DP	0/1:218,376:0.63:594
chr20	61880274	rs2273497	A	G	7259.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr20	61881296	rs927081	A	G	8367.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.59;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,327:1.00:327
chr20	61881559	rs2295535	G	A	314.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:17,14:0.45:31
chr20	61885452	rs34203226	G	T	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.54;ReadPosRankSum=1.261;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:83,60:0.42:143
chr20	61885459	rs34830843	G	T	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:61,90:0.60:151
chr20	61907075	rs6011712	T	C	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chr20	61910551	.	CT	C	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;ClippingRankSum=0.000;DP=54;ExcessHet=3.0103;FS=1.409;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=1.319;SOR=0.346;set=HC	GT:AD:AF:DP	0/1:23,19:0.45:42
chr20	61912715	rs2236195	T	C	701.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.44;ReadPosRankSum=-1.290;SOR=0.717;set=HC	GT:AD:AF:DP	0/1:112,46:0.29:158
chr20	61916379	rs13042357	C	T	5935.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:103,262:0.72:365
chr20	61917241	rs6090342	A	G	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr20	61918164	rs6062431	C	G	5704.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr20	61941747	rs4809287	A	G	8525.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,318:1.00:318
chr20	61943113	rs34976669	A	T	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	0/1:10,25:0.71:35
chr20	61946692	rs6090357	C	T	9049.77	.	AC=2;AF=1.00;AN=2;DB;DP=347;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chr20	61951326	rs11478836	CT	C	3393.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr20	61951489	rs6089881	G	C	3173.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr20	61951789	rs6062891	C	T	3190.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr20	61952490	rs4809533	A	G	3975.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr20	61953365	rs1884821	T	C	2807.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr20	61956782	rs2314251	T	C	10669.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,404:1.00:404
chr20	61960762	rs5842416	CTG	C	7214.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr20	61981104	rs1044397	C	T	5134.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr20	61981134	rs1044396	G	A	4410.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr20	61981536	rs2229960	A	G	4958.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr20	61981554	rs2229959	C	A	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr20	61982085	rs1044394	A	G	15081.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr20	61982124	rs1044393	A	G	19213.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,732:1.00:732
chr20	61982496	.	T	C	1310	.	AC=2;AF=1.00;AN=2;BRF=0.39;FR=0.5003;HP=2;HapScore=1;MGOF=67;MMLQ=23;MQ=56.0;NF=12;NR=32;PP=1310;QD=30.5629821033;SC=CACGCCCACATCCACGTCCAC;SbPval=0.85;Source=Platypus;TC=58;TCF=21;TCR=37;TR=44;WE=61982510;WS=61982486;set=Platypus	GT:AD:AF:DP	1/1:14,44:0.76:58
chr20	61990874	rs6090384	T	C	13321.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr20	61992285	rs11698563	A	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chr20	61992547	rs6090387	G	C	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr20	62005458	rs35318934	G	C	2847.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:53,123:0.70:176
chr20	62038277	rs1801475	T	G	4539.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:94,195:0.67:289
chr20	62038378	rs1801471	A	T	1766.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:28,68:0.71:96
chr20	62038757	rs3746364	C	T	2288.77	.	AC=1;AF=0.500;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	0/1:37,101:0.73:138
chr20	62046496	rs112006486	C	CGACAGACA	11110.73	.	AC=2;AF=1.00;AN=2;DB;DP=487;set=Intersection	GT:AD:AF:DP	1/1:6,410:0.99:416
chr20	62074009	.	CCACCAT	C	2385	.	AC=1;AF=0.500;AN=2;BRF=0.36;FR=0.5000;HP=1;HapScore=2;MGOF=42;MMLQ=26;MQ=43.63;NF=15;NR=39;PP=2385;QD=44.6111111111;SC=ACCATCACCACCACCATCACC;SbPval=0.24;Source=Platypus;TC=82;TCF=18;TCR=64;TR=54;WE=62074046;WS=62073988;set=Platypus	GT:AD:AF:DP	0/1:28,54:0.66:82
chr20	62119559	rs2750403	C	G	88.03	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.01;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr20	62119588	rs71799118	GC	G	1336.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=63.65;SOR=3.816;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr20	62119594	rs71792296	GC	G	1545.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.81;QD=45.46;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chr20	62119595	.	C	G	726	.	AC=2;AF=1.00;AN=2;BRF=0.36;FR=1.0000;HP=3;HapScore=1;MGOF=43;MMLQ=22;MQ=59.53;NF=24;NR=1;PP=726;QD=30.4308485019;SC=GGGGCCCGGGCCCGGGGTTCG;SbPval=0.97;Source=Platypus;TC=36;TCF=31;TCR=5;TR=25;WE=62119603;WS=62119580;set=Platypus	GT:AD:AF:DP	1/1:11,25:0.69:36
chr20	62119615	rs2750402	A	G	2191.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr20	62119875	rs7265428	T	C	1824.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr20	62121702	rs310607	A	G	8057.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr20	62121726	rs310608	T	C	11008.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr20	62126185	rs310617	A	G	4504.77	.	AC=1;AF=0.500;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	0/1:141,215:0.60:356
chr20	62126299	rs2274860	C	T	14677.77	.	AC=1;AF=0.500;AN=2;DB;DP=1089;set=Intersection	GT:AD:AF:DP	0/1:411,673:0.62:1084
chr20	62152519	rs72629024	C	G	2263.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:40,101:0.72:141
chr20	62163812	rs13041839	G	T	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:19,42:0.69:61
chr20	62164828	.	G	T	533.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:81,33:0.29:114
chr20	62173029	rs310656	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr20	62178607	rs139150395	C	T	1975.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:50,92:0.65:142
chr20	62187187	rs3746348	T	C	10832.77	.	AC=1;AF=0.500;AN=2;DB;DP=662;set=Intersection	GT:AD:AF:DP	0/1:188,472:0.72:660
chr20	62187439	rs734750	T	C	8076.77	.	AC=1;AF=0.500;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	0/1:163,368:0.69:531
chr20	62190751	.	CAGTCAGGGTCAGGTGGGAGG	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=-0.000;DP=34;ExcessHet=3.0103;FS=3.136;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.32;ReadPosRankSum=1.327;SOR=2.066;set=HC	GT:AD:AF:DP	0/1:9,6:0.40:15
chr20	62190790	.	G	GT	308	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=4;MGOF=22;MMLQ=28;MQ=54.99;NF=2;NR=4;PP=308;QD=56.5;SC=TCAGGTGGGAGGAGTCAGGGT;SbPval=0.23;Source=Platypus;TC=13;TCF=2;TCR=11;TR=6;WE=62190799;WS=62190780;set=Platypus	GT:AD:AF:DP	0/1:7,6:0.46:13
chr20	62190791	.	G	C	304	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=4;MGOF=22;MMLQ=28;MQ=54.53;NF=3;NR=3;PP=304;QD=56.4618687579;SC=CAGGTGGGAGGAGTCAGGGTC;SbPval=0.49;Source=Platypus;TC=12;TCF=5;TCR=7;TR=6;WE=62190799;WS=62190780;set=Platypus	GT:AD:AF:DP	0/1:6,6:0.50:12
chr20	62191321	rs3810477	A	G	3415.77	.	AC=1;AF=0.500;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	0/1:77,166:0.68:243
chr20	62191739	.	G	A	1119	.	AC=1;AF=0.500;AN=2;FR=0.5000;HP=2;HapScore=1;MGOF=7;MMLQ=28;MQ=59.06;NF=52;NR=23;PP=1119;QD=15.3836161673;SC=CCTCCTCCAGGAAGCCCTCCC;SbPval=0.41;Source=Platypus;TC=212;TCF=152;TCR=60;TR=75;WE=62191747;WS=62191729;set=Platypus	GT:AD:AF:DP	1/0:137,75:0.35:212
chr20	62191759	.	A	G	2250	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=2;MGOF=6;MMLQ=24;MQ=59.15;NF=93;NR=60;PP=2250;QD=14.93314518;SC=CTGACTCACAAGCACCAGACA;SbPval=0.33;Source=Platypus;TC=324;TCF=209;TCR=115;TR=153;WE=62191767;WS=62191749;set=Platypus	GT:AD:AF:DP	0/1:171,153:0.47:324
chr20	62191759	.	A	AGCACCAGACACTCACCACCTCAGCCACCTCCTCCAGAAAGCCCTCCCTGACTCACAG	3280.73	.	AC=2;AF=1.00;AN=2;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.69;QD=117.17;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:2,26:0.93:28
chr20	62191937	rs11551685	G	A	9530.77	.	AC=1;AF=0.500;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	0/1:267,429:0.62:696
chr20	62192374	rs3810480	C	T	3650.77	.	AC=1;AF=0.500;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	0/1:102,147:0.59:249
chr20	62193414	rs310629	A	G	10741.77	.	AC=2;AF=1.00;AN=2;DB;DP=400;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr20	62193587	rs3810482	T	C	2350.77	.	AC=1;AF=0.500;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	0/1:62,106:0.63:168
chr20	62194030	rs3810483	G	C	5086.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:110,222:0.67:332
chr20	62194103	rs3810484	A	G	4026.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:78,175:0.69:253
chr20	62194128	rs3810485	G	A	4534.77	.	AC=1;AF=0.500;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	0/1:94,188:0.67:282
chr20	62195087	rs310630	A	G	3045.77	.	AC=1;AF=0.500;AN=2;DB;DP=608;set=Intersection	GT:AD:AF:DP	0/1:420,185:0.31:605
chr20	62196253	rs310631	C	A	2215.77	.	AC=1;AF=0.500;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	0/1:303,134:0.31:437
chr20	62196807	rs310632	T	C	16104.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,596:1.00:596
chr20	62196884	rs310633	A	G	12644.77	.	AC=2;AF=1.00;AN=2;DB;DP=475;set=Intersection	GT:AD:AF:DP	1/1:0,473:1.00:473
chr20	62197905	rs310634	G	A	185.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr20	62198236	rs415304	G	A	24924.77	.	AC=2;AF=1.00;AN=2;DB;DP=948;set=Intersection	GT:AD:AF:DP	1/1:0,945:1.00:945
chr20	62198348	rs438363	C	T	21647.77	.	AC=2;AF=1.00;AN=2;DB;DP=824;set=Intersection	GT:AD:AF:DP	1/1:0,820:1.00:820
chr20	62198662	rs367440	A	G	9013.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr20	62199100	rs422888	G	A	5102.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr20	62200575	rs1741594	T	C	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr20	62200860	rs1757752	A	G	16677.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr20	62202240	rs402211	A	G	2540.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr20	62221610	rs311496	T	C	10921.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;set=Intersection	GT:AD:AF:DP	1/1:0,401:1.00:401
chr20	62222211	rs1291170	T	G	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr20	62223371	rs311494	A	G	7522.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:3,295:0.99:298
chr20	62224083	rs2236502	C	T	1193.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr20	62227081	rs311489	A	G	9561.77	.	AC=2;AF=1.00;AN=2;DB;DP=375;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr20	62229337	rs414897	G	A	4794.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr20	62234241	rs2145262	A	G	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	62234273	rs766915	A	G	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	62236148	rs6090471	T	C	7294.77	.	AC=2;AF=1.00;AN=2;DB;DP=283;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr20	62272658	rs2150910	T	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr20	62273435	rs186744824	G	A	1708.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:51,76:0.60:127
chr20	62275844	rs6010986	TC	CT	3573.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;JOINED;set=Intersection	GT:AD:AF:DP	0/1:36,89:0.71:125
chr20	62291008	rs6089953	A	G	2166.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:31,89:0.74:120
chr20	62292624	.	G	A	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=5.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=2.117;SOR=0.027;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr20	62294015	rs2297434	C	T	6108.77	.	AC=1;AF=0.500;AN=2;DB;DP=377;set=Intersection	GT:AD:AF:DP	0/1:113,264:0.70:377
chr20	62303794	rs6062300	G	A	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:7,24:0.77:31
chr20	62309554	rs41309367	C	T	6081.77	.	AC=1;AF=0.500;AN=2;DB;DP=411;set=Intersection	GT:AD:AF:DP	0/1:132,276:0.68:408
chr20	62311919	.	G	C	490.77	.	AC=1;AF=0.500;AN=2;DP=81;set=Intersection	GT:AD:AF:DP	0/1:54,26:0.33:80
chr20	62312299	rs2297440	T	C	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:10,11:0.52:21
chr20	62319464	rs2738785	T	C	8164.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr20	62319561	rs2777940	C	G	8948.77	.	AC=1;AF=0.500;AN=2;DB;DP=622;set=Intersection	GT:AD:AF:DP	0/1:205,416:0.67:621
chr20	62319604	rs2777941	A	C	17973.77	.	AC=2;AF=1.00;AN=2;DB;DP=680;set=Intersection	GT:AD:AF:DP	1/1:0,679:1.00:679
chr20	62320968	rs6062302	T	C	10729.77	.	AC=2;AF=1.00;AN=2;DB;DP=425;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.37;SOR=0.717;set=HC	GT:AD:AF:DP	1/1:0,423:1.00:423
chr20	62321655	rs2236506	G	A	14377.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr20	62322288	rs3208007	T	C	2036.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr20	62323006	rs2236507	G	C	6983.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr20	62326110	rs3208008	A	C	7705.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr20	62326487	rs6062495	C	A	12953.77	.	AC=1;AF=0.500;AN=2;DB;DP=928;set=Intersection	GT:AD:AF:DP	0/1:350,576:0.62:926
chr20	62328375	rs2738787	A	G	15165.77	.	AC=2;AF=1.00;AN=2;DB;DP=569;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr20	62332436	rs2738788	A	G	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr20	62332638	rs374497353	A	AC	13424.73	.	AC=2;AF=1.00;AN=2;DB;DP=405;MQ=60.19;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr20	62337622	rs1291211	A	G	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr20	62340115	rs1291212	C	G	3368.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr20	62364885	rs6011068	T	A	16540.77	.	AC=2;AF=1.00;AN=2;DB;DP=623;set=Intersection	GT:AD:AF:DP	1/1:0,622:1.00:622
chr20	62367377	rs2427535	A	G	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr20	62369300	rs914559	C	G	11960.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr20	62369426	rs150938918	C	CGGGGCG	4573.73	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:5,170:0.97:175
chr20	62369895	rs1151624	A	G	7505.77	.	AC=2;AF=1.00;AN=2;DB;DP=274;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr20	62370349	rs1056441	T	C	4633.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr20	62372706	rs4809221	G	A	3122.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr20	62372813	rs2427536	G	A	7337.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.39;SOR=0.783;set=HC	GT:AD:AF:DP	1/1:0,278:1.00:278
chr20	62373707	rs8957	G	T	6056.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr20	62374219	rs1151626	A	C	13192.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:1,487:1.00:488
chr20	62374389	rs1058319	C	T	2427.77	.	AC=1;AF=0.500;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	0/1:190,123:0.39:313
chr20	62374441	rs6742	T	C	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr20	62378349	rs5019252	C	T	6815.77	.	AC=1;AF=0.500;AN=2;DB;DP=425;set=Intersection	GT:AD:AF:DP	0/1:122,303:0.71:425
chr20	62378364	rs12625387	C	T	7972.77	.	AC=1;AF=0.500;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	0/1:145,358:0.71:503
chr20	62378733	rs67611639	G	GT	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.624;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=20.191;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=0.000;QD=13.94;ReadPosRankSum=-1.882;SOR=0.006;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr20	62378734	.	T	TTGGA	320	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=10;HapScore=3;MGOF=25;MMLQ=18;MQ=53.81;NF=2;NR=2;PP=320;QD=84.25;SC=CTGGTGGAGGTGGGGGGGGCA;SbPval=0.1;Source=Platypus;TC=22;TCF=3;TCR=19;TR=4;WE=62378755;WS=62378724;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chr20	62378735	.	G	GGAA	306.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.308;ClippingRankSum=0.000;DP=23;ExcessHet=3.0103;FS=13.087;MLEAC=1;MLEAF=0.500;MQ=59.60;MQRankSum=0.000;QD=15.34;ReadPosRankSum=-1.433;SOR=0.013;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr20	62407104	rs3827026	C	T	6561.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr20	62488889	rs368004706	CT	C	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.475;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=6.686;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.486;QD=1.70;ReadPosRankSum=-0.245;SOR=1.906;set=HC	GT:AD:AF:DP	0/1:73,35:0.32:108
chr20	62504840	.	C	CA	60.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;ClippingRankSum=0.000;DP=33;ExcessHet=3.0103;FS=1.871;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.53;ReadPosRankSum=-0.907;SOR=1.093;set=HC	GT:AD:AF:DP	0/1:16,8:0.33:24
chr20	62517549	rs4809241	A	G	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr20	62518729	rs3795156	A	G	441.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chr20	62518766	rs3795157	C	T	1049.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr20	62520671	rs6062569	T	C	1676.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.00;ReadPosRankSum=-0.750;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:82,47:0.36:129
chr20	62520674	rs6010690	G	T	1679.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.567;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-1.221;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:79,47:0.37:126
chr20	62559964	rs817362	G	A	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr20	62571417	rs35264801	AG	A	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;ClippingRankSum=0.000;DB;DP=114;ExcessHet=3.0103;FS=12.036;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.557;QD=4.61;ReadPosRankSum=-1.679;SOR=0.052;set=HC	GT:AD:AF:DP	0/1:61,28:0.31:89
chr20	62573064	rs817370	T	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:29,14:0.33:43
chr20	62576991	rs2252258	G	A	1168.77	.	AC=1;AF=0.500;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	0/1:150,67:0.31:217
chr20	62578077	rs111264888	A	AT	2653.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr20	62593580	rs2297808	G	T	1144.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:34,53:0.61:87
chr20	62594160	rs7273242	T	C	1200.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:27,49:0.64:76
chr20	62594831	rs41278228	G	A	1061.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:22,48:0.69:70
chr20	62595169	rs817325	A	G	9266.77	.	AC=1;AF=0.500;AN=2;DB;DP=609;set=Intersection	GT:AD:AF:DP	0/1:198,410:0.67:608
chr20	62597433	.	G	A	201	.	AC=1;AF=0.500;AN=2;BRF=0.29;FR=0.5000;HP=2;HapScore=2;MGOF=47;MMLQ=23;MQ=55.08;NF=9;NR=0;PP=201;QD=26.1968013941;SC=CCTGACCTGGGACGAGCCCCC;SbPval=1.0;Source=Platypus;TC=15;TCF=14;TCR=1;TR=9;WE=62597441;WS=62597430;set=Platypus	GT:AD:AF:DP	1/0:6,9:0.60:15
chr20	62597455	.	T	C	1235	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=4;MGOF=12;MMLQ=28;MQ=57.18;NF=14;NR=1;PP=1235;QD=84.6514141698;SC=TACCTTTTCTTACCACTGTTC;SbPval=0.92;Source=Platypus;TC=25;TCF=21;TCR=4;TR=15;WE=62597473;WS=62597445;set=Platypus	GT:AD:AF:DP	1/0:10,15:0.60:25
chr20	62597463	.	TTCC	T	1097	.	AC=1;AF=0.500;AN=2;BRF=0.2;FR=0.5000;HP=1;HapScore=4;MGOF=12;MMLQ=23;MQ=58.29;NF=11;NR=1;PP=1097;QD=94.1666666667;SC=CTTACCACTGTTCCTCCCCGA;SbPval=0.83;Source=Platypus;TC=28;TCF=24;TCR=4;TR=12;WE=62597473;WS=62597445;set=Platypus	GT:AD:AF:DP	1/0:16,12:0.43:28
chr20	62597694	rs817329	T	G	10234.77	.	AC=1;AF=0.500;AN=2;DB;DP=701;set=Intersection	GT:AD:AF:DP	0/1:245,452:0.65:697
chr20	62598815	rs817330	C	T	6758.77	.	AC=1;AF=0.500;AN=2;DB;DP=509;set=Intersection	GT:AD:AF:DP	0/1:190,314:0.62:504
chr20	62599442	rs3810501	C	T	755.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:14,33:0.70:47
chr20	62606765	rs817341	C	T	904.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:19,35:0.65:54
chr20	62607160	rs817343	C	T	3166.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:70,139:0.67:209
chr20	62609670	rs817348	A	G	1608.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:35,73:0.68:108
chr20	62609766	rs817349	C	T	1306.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:32,58:0.64:90
chr20	62612675	rs45566234	G	A	5699.77	.	AC=1;AF=0.500;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	0/1:131,248:0.65:379
chr20	62626152	rs6011248	C	A	431.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chr20	62659937	rs41278240	C	T	2027.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:49,91:0.65:140
chr20	62663136	rs7260907	A	C	1462.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:19,57:0.75:76
chr20	62669916	.	C	CCCGGG	334.73	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chr20	62680478	rs200837124	T	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=8.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.91;ReadPosRankSum=0.243;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:12,26:0.68:38
chr20	62697751	rs4809251	T	C	3884.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr20	62698188	rs34848242	G	A	2439.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:73,104:0.59:177
chr20	62698484	rs10460612	G	A	945.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:14,39:0.74:53
chr20	62701092	rs4809393	A	C	1717.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:35,75:0.68:110
chr20	62703490	rs13039439	C	T	7800.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:193,341:0.64:534
chr20	62705140	rs6011280	A	C	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chr20	62714783	rs6010717	C	G	2348.77	.	AC=1;AF=0.500;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	0/1:250,135:0.35:385
chr20	62724438	rs6010719	C	G	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:39,19:0.33:58
chr20	62729577	rs2295448	C	T	3986.77	.	AC=1;AF=0.500;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	0/1:384,214:0.36:598
chr20	62737075	.	G	C	230.84	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=38.47;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	62737078	.	G	GATGATGGGGGT	221.80	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.19;QD=36.97;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr20	62737139	.	GGTGA	G	1888	.	AC=1;AF=0.500;AN=2;BRF=0.57;FR=0.5000;HP=5;HapScore=1;MGOF=33;MMLQ=15;MQ=57.15;NF=5;NR=2;PP=1888;QD=273.428571429;SC=GATGATGGGGGGTGATGATGG;SbPval=0.13;Source=Platypus;TC=34;TCF=14;TCR=20;TR=7;WE=62737172;WS=62737129;set=Platypus	GT:AD:AF:DP	0/1:27,7:0.21:34
chr20	62737537	rs4809400	C	A	2270.77	.	AC=1;AF=0.500;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	0/1:309,131:0.30:440
chr20	62737568	rs4809401	T	C	5410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DB;DP=498;ExcessHet=3.0103;FS=0.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.89;ReadPosRankSum=0.188;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:342,155:0.31:497
chr20	62737573	.	G	A	5395.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;ClippingRankSum=0.000;DP=497;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.88;ReadPosRankSum=-0.310;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:338,158:0.32:496
chr20	62738060	rs150422039	G	A	1657.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:147,90:0.38:237
chr20	62744682	rs75030380	G	A	1272.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:158,74:0.32:232
chr20	62830290	rs2295450	C	A	1936.77	.	AC=1;AF=0.500;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	0/1:206,108:0.34:314
chr20	62836382	rs2273443	C	T	1963.77	.	AC=1;AF=0.500;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	0/1:207,111:0.35:318
chr20	62838866	rs76118085	G	C	558.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:67,29:0.30:96
chr20	62838933	rs6090069	T	C	2100.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:231,110:0.32:341
chr20	62839888	rs59834539	T	C	379.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chr20	62842865	.	C	T	418.77	.	AC=1;AF=0.500;AN=2;DP=47;set=Intersection	GT:AD:AF:DP	0/1:29,18:0.38:47
chr20	62850358	rs41279348	C	T	1072.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:76,54:0.42:130
chr20	62858693	rs2273446	C	G	1240.77	.	AC=1;AF=0.500;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	0/1:96,63:0.40:159
chr20	62858844	rs41279350	A	G	4610.77	.	AC=1;AF=0.500;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	0/1:94,213:0.69:307
chr20	62859179	rs6089798	A	G	874.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:10,35:0.78:45
chr20	62896665	rs17878941	G	A	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chr20	62899394	rs73149703	T	C	1681.77	.	AC=1;AF=0.500;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	0/1:122,90:0.42:212
chr20	62903535	rs11906201	T	C	5869.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr20	62903550	rs11905831	A	G	6870.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,260:1.00:260
chr20	62903729	rs11907696	C	T	3022.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr20	62904542	rs6062361	A	G	835.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr20	62905090	rs148085913	T	TTTC	187.87	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr20	62959184	rs200444735	T	C	182.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=123;ExcessHet=3.0103;FS=0.883;MLEAC=1;MLEAF=0.500;MQ=55.47;MQRankSum=-7.425;QD=1.49;ReadPosRankSum=-0.329;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:101,22:0.18:123
chr20	62959363	rs111569474	G	C	1256.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:25,53:0.68:78
chr21	9825838	.	T	C	2474.73	.	AC=1;AF=0.500;AN=2;DP=195;set=Intersection	GT:AD:AF:DP	0/1:76,102:0.57:178
chr21	9826301	rs374753985	T	C	46313.77	.	AC=2;AF=1.00;AN=2;DB;DP=1933;set=Intersection	GT:AD:AF:DP	1/1:91,1840:0.95:1931
chr21	9907222	.	T	C	3235.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.005;ClippingRankSum=0.000;DP=465;ExcessHet=3.0103;FS=10.643;MLEAC=1;MLEAF=0.500;MQ=49.69;MQRankSum=-9.830;QD=6.97;ReadPosRankSum=0.873;SOR=1.440;set=HC	GT:AD:AF:DP	0/1:305,159:0.34:464
chr21	9907271	.	A	G	6408.77	.	AC=1;AF=0.500;AN=2;DP=922;set=Intersection	GT:AD:AF:DP	0/1:580,340:0.37:920
chr21	9907345	.	C	T	10983.77	.	AC=1;AF=0.500;AN=2;DP=1334;set=Intersection	GT:AD:AF:DP	0/1:770,564:0.42:1334
chr21	9907375	rs146622385	T	C	17088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025;ClippingRankSum=0.000;DB;DP=1065;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=54.75;MQRankSum=-12.805;QD=16.06;ReadPosRankSum=0.987;SOR=0.754;set=HC	GT:AD:AF:DP	0/1:601,463:0.44:1064
chr21	9907384	rs140139768	G	A	16899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145;ClippingRankSum=0.000;DB;DP=1006;ExcessHet=3.0103;FS=0.528;MLEAC=1;MLEAF=0.500;MQ=54.38;MQRankSum=-10.716;QD=16.80;ReadPosRankSum=0.152;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:565,441:0.44:1006
chr21	9907397	rs150294462	C	T	14387.77	.	AC=1;AF=0.500;AN=2;DB;DP=867;set=Intersection	GT:AD:AF:DP	0/1:497,370:0.43:867
chr21	9907416	.	C	T	11198.77	.	AC=1;AF=0.500;AN=2;DP=690;set=Intersection	GT:AD:AF:DP	0/1:391,299:0.43:690
chr21	9907503	.	C	A	1436.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.88;MQRankSum=-0.161;QD=9.45;ReadPosRankSum=-0.149;SOR=0.297;set=HC	GT:AD:AF:DP	0/1:96,56:0.37:152
chr21	9907592	.	T	C	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.069;ClippingRankSum=0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.58;MQRankSum=-0.905;QD=4.93;ReadPosRankSum=-1.456;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:33,11:0.25:44
chr21	10793776	rs368569117	GGAGTT	G	1563.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.04;QD=42.26;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	10793781	.	T	G	436	.	AC=2;AF=1.00;AN=2;BRF=0.42;FR=1.0000;HP=1;HapScore=2;MGOF=149;MMLQ=24;MQ=53.46;NF=30;NR=2;PP=436;QD=14.7116003921;SC=AGAATGGAGTTGAATGGAGCA;SbPval=0.59;Source=Platypus;TC=32;TCF=30;TCR=2;TR=32;WE=10793789;WS=10793771;set=Platypus	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	10793844	.	G	GTGGAATGGAATGGAGTGGAA	2979	.	AC=2;AF=1.00;AN=2;BRF=0.49;FR=1.0000;HP=1;HapScore=1;MGOF=56;MMLQ=23;MQ=56.97;NF=17;NR=24;PP=2979;QD=20;SC=ATGCATTGGAGTGGAATGGAA;SbPval=0.34;Source=Platypus;TC=89;TCF=32;TCR=57;TR=41;WE=10793852;WS=10793827;set=Platypus	GT:AD:AF:DP	1/1:48,41:0.46:89
chr21	10793860	.	T	TGG	12776.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=62.33;SOR=1.442;set=HC	GT:AD:AF:DP	1/1:0,205:1.00:205
chr21	10793861	.	A	AATGGAATGGAATGGAGTG	13036.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=223;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=58.46;SOR=1.231;set=HC	GT:AD:AF:DP	1/1:0,223:1.00:223
chr21	10793891	rs28490105	T	G	17364.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.52;QD=40.76;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,426:1.00:426
chr21	10793925	rs28641787	T	A	4081.77	.	AC=1;AF=0.500;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	0/1:284,220:0.44:504
chr21	10793961	.	T	TGAATGGAATGGACTC	12939.73	.	AC=2;AF=1.00;AN=2;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr21	10794022	rs28971978	A	G	3610.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	10794047	rs28970391	G	A	2598.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.80;QD=48.13;SOR=4.654;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	10794047	.	GTAGTG	ATAGCA,ATAGTG	1123	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.41;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=271;MMLQ=23;MQ=60.23;NF=1,3;NR=22,46;PP=1123,867;QD=51.5855597766;SC=GGATGGAATGGTAGTGGATGG;SbPval=0.76;Source=Platypus;TC=49;TCF=3;TCR=46;TR=23,49;WE=10794060;WS=10794037;set=Platypus	GT:AF:DP	0/1:0.47:49
chr21	10794051	rs200584440	T	C	1145.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.946;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=-0.400;QD=22.92;ReadPosRankSum=-0.206;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr21	10794052	rs74672900	G	A	1145.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=5.222;ClippingRankSum=0.000;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.86;MQRankSum=-0.400;QD=22.92;ReadPosRankSum=-0.196;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:20,30:0.60:50
chr21	10862599	rs3883945	C	T	27554.77	.	AC=2;AF=1.00;AN=2;DB;DP=611;set=Intersection	GT:AD:AF:DP	1/1:0,609:1.00:609
chr21	10862618	rs3916251	T	C	30762.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,747:1.00:747
chr21	10862846	rs3916645	A	T	33184.77	.	AC=2;AF=1.00;AN=2;DB;DP=896;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.11;QD=37.08;SOR=0.973;set=HC	GT:AD:AF:DP	1/1:0,895:1.00:895
chr21	10862846	.	ATCACCAG	TTCACCAA,TTCACCAG	2962	.	AC=1,0;AF=0.500,0.00;AN=2;BRF=0.2;FR=0.5000,0.5000;HP=2;HapScore=1;MGOF=18;MMLQ=28;MQ=55.57;NF=249,484;NR=183,376;PP=2944,2962;QD=20;SC=TGGATACACCATCACCAGCTA;SbPval=0.61;Source=Platypus;TC=860;TCF=484;TCR=376;TR=432,860;WE=10862861;WS=10862836;set=Platypus	GT:AF:DP	0/1:0.50:860
chr21	10862853	rs1961808	G	A	11106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.842;ClippingRankSum=0.000;DB;DP=938;ExcessHet=3.0103;FS=1.107;MLEAC=1;MLEAF=0.500;MQ=57.14;MQRankSum=-3.475;QD=11.87;ReadPosRankSum=-1.612;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:433,503:0.54:936
chr21	10862874	rs1807747	A	G	27638.77	.	AC=2;AF=1.00;AN=2;DB;DP=1035;set=Intersection	GT:AD:AF:DP	1/1:0,1035:1.00:1035
chr21	10862947	rs3883944	G	A	35826.77	.	AC=2;AF=1.00;AN=2;DB;DP=1311;set=Intersection	GT:AD:AF:DP	1/1:0,1307:1.00:1307
chr21	10863087	rs28521368	T	G	22684.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;set=Intersection	GT:AD:AF:DP	1/1:0,839:1.00:839
chr21	10910291	rs150480	C	T	8297.77	.	AC=1;AF=0.500;AN=2;DB;DP=830;set=Intersection	GT:AD:AF:DP	0/1:422,404:0.49:826
chr21	10910311	rs9996	T	G	9839.77	.	AC=1;AF=0.500;AN=2;DB;DP=975;set=Intersection	GT:AD:AF:DP	0/1:501,472:0.49:973
chr21	10910347	rs150482	A	G	10648.77	.	AC=1;AF=0.500;AN=2;DB;DP=1037;set=Intersection	GT:AD:AF:DP	0/1:519,514:0.50:1033
chr21	10916293	rs150483	A	G	2120.77	.	AC=1;AF=0.500;AN=2;DB;DP=237;set=Intersection	GT:AD:AF:DP	0/1:126,110:0.47:236
chr21	10920098	rs212146	T	C	9897.77	.	AC=2;AF=1.00;AN=2;DB;DP=382;set=Intersection	GT:AD:AF:DP	1/1:0,379:1.00:379
chr21	10935116	rs625018	T	G	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:33,20:0.38:53
chr21	10944828	rs146327494	CAAG	C	1684.73	.	AC=1;AF=0.500;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	0/1:70,46:0.40:116
chr21	10959881	rs212112	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:93,89:0.49:182
chr21	10969156	.	G	GATAGGAGACGCGATT	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.447;ClippingRankSum=0.000;DP=246;ExcessHet=3.0103;FS=42.169;MLEAC=1;MLEAF=0.500;MQ=59.22;MQRankSum=-9.143;QD=0.16;ReadPosRankSum=-6.305;SOR=5.542;set=HC	GT:AD:AF:DP	0/1:215,18:0.08:233
chr21	10971892	rs10433039	G	A	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	0/1:37,43:0.54:80
chr21	10973787	rs469953	T	A	5082.77	.	AC=1;AF=0.500;AN=2;DB;DP=530;set=Intersection	GT:AD:AF:DP	0/1:288,238:0.45:526
chr21	10973798	rs469961	T	C	4635.77	.	AC=1;AF=0.500;AN=2;DB;DP=456;set=Intersection	GT:AD:AF:DP	0/1:247,207:0.46:454
chr21	10998165	rs364232	C	A	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr21	11026874	rs6582728	G	T	233.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chr21	11027085	rs6421268	A	C	1432.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:85,70:0.45:155
chr21	11027129	rs4577378	C	T	663.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:35,30:0.46:65
chr21	11038649	rs28565510	C	A	161.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.404;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.74;MQRankSum=-0.097;QD=3.44;ReadPosRankSum=-0.322;SOR=0.948;set=HC	GT:AD:AF:DP	0/1:37,10:0.21:47
chr21	11038722	rs62209718	C	A	523.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.403;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=3.487;MLEAC=1;MLEAF=0.500;MQ=56.24;MQRankSum=-0.473;QD=2.86;ReadPosRankSum=-0.349;SOR=1.019;set=HC	GT:AD:AF:DP	0/1:146,37:0.20:183
chr21	11038843	rs10433076	G	C	962.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.619;ClippingRankSum=0.000;DB;DP=458;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.22;MQRankSum=-9.091;QD=2.11;ReadPosRankSum=2.416;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:368,89:0.19:457
chr21	11038868	rs67736403	C	T	1924.77	.	AC=1;AF=0.500;AN=2;DB;DP=491;set=Intersection	GT:AD:AF:DP	0/1:373,118:0.24:491
chr21	11038909	rs28473122	G	T	784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.453;ClippingRankSum=0.000;DB;DP=651;ExcessHet=3.0103;FS=13.884;MLEAC=1;MLEAF=0.500;MQ=52.05;MQRankSum=-9.104;QD=1.21;ReadPosRankSum=-1.425;SOR=2.039;set=HC	GT:AD:AF:DP	0/1:549,98:0.15:647
chr21	11038957	rs10433077	T	C	1765.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500;ClippingRankSum=0.000;DB;DP=880;ExcessHet=3.0103;FS=2.301;MLEAC=1;MLEAF=0.500;MQ=51.39;MQRankSum=-7.347;QD=2.01;ReadPosRankSum=3.179;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:712,168:0.19:880
chr21	11038998	rs1625628	G	A	561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.585;ClippingRankSum=0.000;DB;DP=1107;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=49.73;MQRankSum=-7.529;QD=0.51;ReadPosRankSum=0.940;SOR=0.702;set=HC	GT:AD:AF:DP	0/1:955,150:0.14:1105
chr21	11039072	rs1625833	G	T	899.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574;ClippingRankSum=0.000;DB;DP=1205;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=53.80;MQRankSum=-4.067;QD=0.75;ReadPosRankSum=1.158;SOR=0.681;set=HC	GT:AD:AF:DP	0/1:1030,172:0.14:1202
chr21	11039142	rs2537265	T	A	7615.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.966;ClippingRankSum=0.000;DB;DP=927;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-5.314;QD=8.29;ReadPosRankSum=0.975;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:680,239:0.26:919
chr21	11039152	rs2740231	A	C	7560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.978;ClippingRankSum=0.000;DB;DP=945;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-2.408;QD=8.08;ReadPosRankSum=1.095;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:696,240:0.26:936
chr21	11049360	rs1640139	A	T	762.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.076;ClippingRankSum=0.000;DB;DP=275;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.07;MQRankSum=-6.449;QD=2.77;ReadPosRankSum=0.619;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:221,54:0.20:275
chr21	11049364	rs468502	C	T	1717.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578;ClippingRankSum=0.000;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=2.337;QD=5.90;ReadPosRankSum=-1.017;SOR=0.714;set=HC	GT:AD:AF:DP	0/1:204,87:0.30:291
chr21	11049389	rs2775315	G	A	541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.429;ClippingRankSum=0.000;DB;DP=376;ExcessHet=3.0103;FS=3.479;MLEAC=1;MLEAF=0.500;MQ=56.86;MQRankSum=-4.082;QD=1.44;ReadPosRankSum=1.768;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:318,58:0.15:376
chr21	11049395	rs467462	T	C	9139.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.120;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=1.414;MLEAC=1;MLEAF=0.500;MQ=56.42;MQRankSum=-0.721;QD=23.80;ReadPosRankSum=0.677;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:109,275:0.72:384
chr21	11049404	rs2259244	C	G	3432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.564;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=55.77;MQRankSum=-2.187;QD=8.87;ReadPosRankSum=0.981;SOR=0.744;set=HC	GT:AD:AF:DP	0/1:226,161:0.42:387
chr21	11049440	rs2775316	G	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.546;ClippingRankSum=0.000;DB;DP=387;ExcessHet=3.0103;FS=2.370;MLEAC=1;MLEAF=0.500;MQ=53.98;MQRankSum=-5.000;QD=1.54;ReadPosRankSum=-1.087;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:325,62:0.16:387
chr21	11049516	rs468629	G	A	9902.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.36;QD=31.54;SOR=1.114;set=HC	GT:AD:AF:DP	1/1:0,314:1.00:314
chr21	11049584	rs9808647	C	T	5320.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.979;ClippingRankSum=0.000;DB;DP=917;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.15;MQRankSum=-4.883;QD=5.80;ReadPosRankSum=1.671;SOR=0.630;set=HC	GT:AD:AF:DP	0/1:739,178:0.19:917
chr21	11049592	rs3906134	C	T	5389.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.243;ClippingRankSum=0.000;DB;DP=951;ExcessHet=3.0103;FS=0.665;MLEAC=1;MLEAF=0.500;MQ=51.59;MQRankSum=-4.043;QD=5.67;ReadPosRankSum=-0.181;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:761,190:0.20:951
chr21	11049617	rs2740327	C	G	642.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209;ClippingRankSum=0.000;DB;DP=992;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=52.38;MQRankSum=-1.796;QD=0.65;ReadPosRankSum=-1.596;SOR=0.661;set=HC	GT:AD:AF:DP	0/1:845,145:0.15:990
chr21	11058119	rs2261873	C	T	1206.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:117,58:0.33:175
chr21	11058226	rs4913558	G	C	7502.77	.	AC=1;AF=0.500;AN=2;DB;DP=990;set=Intersection	GT:AD:AF:DP	0/1:588,401:0.41:989
chr21	11058227	rs2775343	T	A	89.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.113;ClippingRankSum=0.000;DB;DP=999;ExcessHet=3.0103;FS=8.248;MLEAC=1;MLEAF=0.500;MQ=56.21;MQRankSum=-15.255;QD=0.09;ReadPosRankSum=-7.517;SOR=1.873;set=HC	GT:AD:AF:DP	0/1:936,63:0.06:999
chr21	11058229	rs55883018	T	C	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=10.067;ClippingRankSum=0.000;DB;DP=1030;ExcessHet=3.0103;FS=5.753;MLEAC=1;MLEAF=0.500;MQ=55.97;MQRankSum=-16.581;QD=0.08;ReadPosRankSum=-8.928;SOR=1.713;set=HC	GT:AD:AF:DP	0/1:951,78:0.08:1029
chr21	11058349	rs209032	T	G	3521.77	.	AC=1;AF=0.500;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	0/1:337,192:0.36:529
chr21	11058404	rs58094605	A	ACT	3009.73	.	AC=1;AF=0.500;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	0/1:52,82:0.61:134
chr21	11059734	rs75838613	C	T	1361.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.977;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=1.661;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-2.843;QD=13.22;ReadPosRankSum=-0.186;SOR=0.496;set=HC	GT:AD:AF:DP	0/1:64,39:0.38:103
chr21	11059735	rs2775349	T	C	2985.78	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	0/1:13,90:0.87:103
chr21	11059736	rs7279429	G	A	30.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.776;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=2.922;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-6.080;QD=0.30;ReadPosRankSum=-1.005;SOR=1.256;set=HC	GT:AD:AF:DP	0/1:93,10:0.10:103
chr21	11059744	rs57566895	A	G	1611.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.494;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-6.651;QD=15.80;ReadPosRankSum=1.072;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:58,44:0.43:102
chr21	11059821	rs2775350	T	C	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;ClippingRankSum=0.000;DB;DP=125;ExcessHet=3.0103;FS=3.641;MLEAC=1;MLEAF=0.500;MQ=58.73;MQRankSum=1.271;QD=0.28;ReadPosRankSum=1.361;SOR=1.193;set=HC	GT:AD:AF:DP	0/1:108,16:0.13:124
chr21	11059841	rs77547988	C	T	348.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.045;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.98;MQRankSum=-5.845;QD=2.26;ReadPosRankSum=-0.005;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:131,23:0.15:154
chr21	11059845	rs7364036	C	T	889.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=1.326;MLEAC=1;MLEAF=0.500;MQ=59.13;MQRankSum=0.592;QD=5.49;ReadPosRankSum=-1.261;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:110,52:0.32:162
chr21	11059853	rs75278999	CA	TG	482.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.423;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.16;MQRankSum=-5.620;QD=2.89;ReadPosRankSum=0.700;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:144,23:0.14:167
chr21	11059861	rs2775351	T	G	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.687;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=1.083;QD=0.42;ReadPosRankSum=1.027;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:156,25:0.14:181
chr21	11059877	rs7364059	T	C	2057.77	.	AC=1;AF=0.500;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	0/1:109,87:0.44:196
chr21	11059951	rs75112368	T	C	99.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.678;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.967;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-2.465;QD=0.91;ReadPosRankSum=-0.219;SOR=0.560;set=HC	GT:AD:AF:DP	0/1:92,18:0.16:110
chr21	11060013	rs2838200	T	C	331.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.353;MLEAC=1;MLEAF=0.500;MQ=59.02;MQRankSum=-3.801;QD=9.76;ReadPosRankSum=-0.313;SOR=0.284;set=HC	GT:AD:AF:DP	0/1:19,15:0.44:34
chr21	11060024	.	CAGA	C	73.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.584;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.53;MQRankSum=1.181;QD=3.21;ReadPosRankSum=-0.367;SOR=0.869;set=HC	GT:AD:AF:DP	0/1:19,4:0.17:23
chr21	11060029	rs112803135	A	AAAAAT	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=4.135;MLEAC=1;MLEAF=0.500;MQ=59.45;MQRankSum=-1.807;QD=3.27;ReadPosRankSum=-0.204;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr21	11098626	rs1967649	G	A	8322.77	.	AC=1;AF=0.500;AN=2;DB;DP=827;set=Intersection	GT:AD:AF:DP	0/1:425,401:0.49:826
chr21	11098674	rs1752238	T	C	34816.77	.	AC=2;AF=1.00;AN=2;DB;DP=1397;set=Intersection	GT:AD:AF:DP	1/1:38,1354:0.97:1392
chr21	14756428	.	T	TAC	66.73	.	AC=1;AF=0.500;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=6.07;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:11,0:0:11
chr21	14756438	rs3126400	T	C	148.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.610;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=3.217;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:10,11:0.52:21
chr21	14756449	rs200837066	A	G,ATGTG	390.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.344;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=15.63;ReadPosRankSum=0.383;SOR=0.784;set=HC	GT:AD:AF:DP	1/2:2,12,11:0.48,0.44:25
chr21	14756794	rs2792526	G	A	5961.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr21	14757043	rs2257596	T	C	9910.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,372:1.00:372
chr21	14760151	rs2775777	T	C	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	14760203	rs2775779	C	T	2249.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.45;QD=26.47;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	14765864	rs143497898	A	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr21	14766093	rs2775805	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	14771323	.	TTC	T	3677.73	.	AC=2;AF=1.00;AN=2;DP=84;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.66;QD=44.31;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	14771327	.	T	TGC	3677.73	.	AC=2;AF=1.00;AN=2;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=54.60;QD=44.31;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr21	14778721	rs2747232	A	T	141.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.48;QD=28.38;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	14778811	rs112146711	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.13;QD=26.83;SOR=0.836;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	14916824	rs7280211	T	A	5849.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:24,229:0.91:253
chr21	15352253	rs56270809	A	C	408.41	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:2,17:0.89:19
chr21	15373420	rs1297087	C	A	8531.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:1,308:1.00:309
chr21	15374334	.	TA	T	2071.73	.	AC=1;AF=0.500;AN=2;DP=171;set=Intersection	GT:AD:AF:DP	0/1:26,120:0.82:146
chr21	15481157	rs1136522	T	C	375.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	15481168	rs62208635	C	A	455.79	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,18:0.95:19
chr21	15481234	rs7279700	C	T	2449.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	15481365	rs7278737	G	T	2353.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	15516976	rs7283442	T	A	2538.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	15554030	rs2822438	T	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:10,55:0.85:65
chr21	15593286	rs430245	A	G	95.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chr21	15660716	rs1153305	G	A	1620.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.94;SOR=1.733;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	15663777	rs34559607	A	AGTGT	2204.82	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:4,53:0.93:57
chr21	15748186	rs2822642	C	A	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	15755182	rs34742635	G	A	78.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=13.427;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.13;ReadPosRankSum=0.430;SOR=0.025;set=HC	GT:AD:AF:DP	0/1:59,11:0.16:70
chr21	15755349	rs7281846	T	C	21119.77	.	AC=2;AF=1.00;AN=2;DB;DP=828;set=Intersection	GT:AD:AF:DP	1/1:0,824:1.00:824
chr21	15884949	rs3761320	A	T	111.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.77;ReadPosRankSum=0.606;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chr21	15954593	rs2822786	G	A	7747.78	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:41,330:0.89:371
chr21	15954660	rs2822787	T	C	10648.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,385:1.00:385
chr21	15964920	rs466913	C	G	1823.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:12,77:0.87:89
chr21	15966421	rs460852	T	A	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:1,74:0.99:75
chr21	15974151	rs75999344	C	T	190.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chr21	15974407	rs61745082	A	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=1.557;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-0.374;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:9,33:0.79:42
chr21	15974407	.	ATT	GTC	452	.	AC=1;AF=0.500;AN=2;BRF=0.1;FR=0.5000;HP=4;HapScore=2;MGOF=5;MMLQ=22;MQ=60.0;NF=9;NR=20;PP=452;QD=17.4299267194;SC=TTAGAAAATCATTTTCATTTA;SbPval=0.52;Source=Platypus;TC=40;TCF=12;TCR=28;TR=29;WE=15974417;WS=15974397;set=Platypus	GT:AD:AF:DP	0/1:11,29:0.72:40
chr21	15974409	rs456067	T	C	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.73;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	15984982	rs2822809	C	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	15988184	.	CAAA	C	852.73	.	AC=2;AF=1.00;AN=2;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.26;QD=40.61;SOR=2.093;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	15991786	rs1292586	C	G	214.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	15991989	rs113688856	G	A	1296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;ClippingRankSum=0.000;DB;DP=76;ExcessHet=3.0103;FS=2.328;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-1.305;SOR=1.073;set=HC	GT:AD:AF:DP	0/1:17,59:0.78:76
chr21	17203648	rs12482695	G	T	907.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:5,34:0.87:39
chr21	17236477	.	CA	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.82;ReadPosRankSum=-1.309;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:19,10:0.34:29
chr21	17238521	rs147076784	AAT	A	139.73	.	AC=1;AF=0.500;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	0/1:23,8:0.26:31
chr21	17533027	rs34485071	C	T	2656.73	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.18;QD=44.28;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	17533030	rs13052116	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.35;QD=44.15;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	17533075	.	T	TTCTTTCTTC	2279.73	.	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=64.87;QD=42.22;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	17533165	.	C	A	390.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DP=266;ExcessHet=3.0103;FS=1.277;MLEAC=1;MLEAF=0.500;MQ=60.53;MQRankSum=-0.845;QD=1.48;ReadPosRankSum=0.739;SOR=0.567;set=HC	GT:AD:AF:DP	0/1:218,46:0.17:264
chr21	17533255	rs34726086	G	A	9547.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:0,347:1.00:347
chr21	17533272	.	GTGTTTTGGATTTTCGATTTTGGAATATTTGCCTA	G	252.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;ClippingRankSum=0.000;DP=298;ExcessHet=3.0103;FS=0.773;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.89;ReadPosRankSum=0.512;SOR=0.844;set=HC	GT:AD:AF:DP	0/1:257,26:0.09:283
chr21	17560174	rs10629120	T	TTCCTTCCC	6733.73	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.65;QD=46.76;SOR=0.779;set=HC	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	19165942	rs2824493	C	T	524.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chr21	19169155	rs1047978	G	C	6829.77	.	AC=1;AF=0.500;AN=2;DB;DP=508;set=Intersection	GT:AD:AF:DP	0/1:195,310:0.61:505
chr21	19190427	rs243556	C	T	481.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	19506651	rs2824646	G	A	6498.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr21	19506694	rs9977750	T	G	14928.77	.	AC=2;AF=1.00;AN=2;DB;DP=343;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr21	19506715	rs2824647	C	T	15531.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr21	19628809	rs201642242	C	CT	142.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.83;ReadPosRankSum=-0.834;SOR=1.003;set=HC	GT:AD:AF:DP	0/1:138,34:0.20:172
chr21	19666526	rs6517807	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	19666530	rs4395327	T	C	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=3.516;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	19666910	rs2824718	A	G	2661.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	19670118	rs2824721	G	A	7478.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr21	19685405	rs7281534	A	G	4789.77	.	AC=1;AF=0.500;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	0/1:111,221:0.67:332
chr21	19687376	rs2144203	G	A	4234.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	19701421	rs68023548	GCT	G	1975.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:79,57:0.42:136
chr21	19704296	rs1155847	C	T	1796.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	19716399	rs78573401	T	A	590.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:10,31:0.76:41
chr21	19744415	.	A	ATG	355.73	.	AC=1;AF=0.500;AN=2;DP=80;set=Intersection	GT:AD:AF:DP	0/1:45,22:0.33:67
chr21	19770117	rs2824803	T	C	143.77	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:11,9:0.45:20
chr21	19770734	rs2824805	G	C	176.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:15,11:0.42:26
chr21	20058298	rs6517825	C	T	2830.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.73;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	22371166	rs6518017	G	A	180.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	22643720	rs8127865	A	G	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	22652720	rs9306013	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	22653099	rs1012523	G	A	247.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.53;SOR=3.056;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	22656409	rs34246223	AT	A	347.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	22658544	rs111713483	TTTTGTGA	T	2303.73	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	22696837	rs232467	C	G	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	22696881	rs11334381	TG	T	2698.73	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	22910116	rs2826891	C	T	107.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	22910123	rs9979040	T	G	173.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=34.78;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	26960189	rs2829806	T	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	26961086	rs2829807	T	C	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.76;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	26965100	rs2829809	C	A	2523.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	26965148	rs1135638	G	A	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.77;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr21	26965205	rs1057885	T	C	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	26966317	rs13048408	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	26969703	rs1135618	T	C	749.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.99;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	26973663	rs140202502	A	ATATACT	9556.73	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	26976250	rs7278164	A	G	8645.77	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr21	26978950	rs3989369	A	G	3690.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	26979628	rs9653688	G	A	16134.77	.	AC=2;AF=1.00;AN=2;DB;DP=614;set=Intersection	GT:AD:AF:DP	1/1:0,614:1.00:614
chr21	27056099	rs2829863	C	A	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	27326859	rs2829997	G	A	2335.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	27327100	rs417676	G	A	594.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	27327862	rs2251337	G	C	1411.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:1,49:0.98:50
chr21	27328175	rs440666	T	C	3215.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	27348372	rs3737413	A	G	2320.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	27369481	rs2051504	C	T	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	27382362	rs11455808	A	AG	4777.73	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	27382417	rs2409166	C	G	1881.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	28296324	rs151065	A	G	2396.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	28296389	rs3746839	A	G	5872.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	28302355	rs226794	A	G	5223.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr21	28326276	rs233894	G	A	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	28327320	rs12626485	C	T	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	30250555	rs2205446	T	C	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	30250615	rs2205447	T	C	5803.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr21	30250812	rs2205448	T	C	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	30254695	rs2254507	C	T	1821.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	30257418	rs1997605	G	A	4142.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	30257560	rs1997606	C	G	21405.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.14;SOR=0.697;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr21	30257568	rs1997607	T	C	21394.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.30;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,483:1.00:483
chr21	30257729	rs2859734	A	G	1905.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	30303388	rs58579273	G	GGT	668.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.885;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.11;ReadPosRankSum=1.290;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chr21	30315681	rs2705666	T	A	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	30318207	rs2250574	T	C	8385.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr21	30318466	rs2243552	T	G	2228.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.86;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	30325875	rs2243491	A	T	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	30330929	rs2776243	G	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	30333862	.	G	GA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=0.923;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.26;ReadPosRankSum=0.169;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:110,20:0.15:130
chr21	30338153	.	CA	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=2.143;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:38,12:0.24:50
chr21	30338293	rs5843357	G	GC	2205.73	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	30341891	rs2254796	A	G	1555.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	30357163	rs2245431	G	T	5608.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	30357307	rs2245434	C	T	662.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	30391671	.	GAAAA	G,GA	716.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.568;ClippingRankSum=0.000;DP=27;ExcessHet=3.0103;FS=4.393;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.40;MQRankSum=0.436;QD=32.58;ReadPosRankSum=1.499;SOR=1.326;set=HC	GT:AD:AF:DP	1/2:1,10,11:0.45,0.50:22
chr21	30410791	rs146577278	CTGAA	C	2784.73	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	30414248	rs146502072	TTAGA	T	412.74	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	30442475	rs2183569	T	C	659.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.98;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	30442481	rs2183570	C	T	693.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.81;SOR=3.383;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	30444331	rs58699995	T	TA	1371.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.865;ClippingRankSum=0.000;DB;DP=85;ExcessHet=3.0103;FS=1.631;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.000;QD=17.15;ReadPosRankSum=-1.721;SOR=0.311;set=HC	GT:AD:AF:DP	1/1:10,70:0.88:80
chr21	30445774	rs2070611	G	C	8098.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chr21	30445948	rs2070610	G	A	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	30481371	rs2832181	G	T	5264.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	30481612	rs2832182	G	A	1563.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	30532146	rs66780570	TA	T	1564.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:8,93:0.92:101
chr21	30830393	rs9981313	T	G	3309.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	31066436	rs11434895	A	AT	84.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.108;ClippingRankSum=-0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.65;ReadPosRankSum=-0.494;SOR=1.402;set=HC	GT:AD:AF:DP	0/1:5,10:0.67:15
chr21	31655212	rs1557291	A	C	1507.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	31709691	rs2244485	G	A	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	31720287	rs762377	A	G	2211.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	31744127	rs877346	A	T	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	31869286	rs2298437	T	C	14619.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,539:1.00:539
chr21	31913981	rs5843453	AG	A	20978.73	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr21	31914000	rs1023364	T	A	22824.77	.	AC=2;AF=1.00;AN=2;DB;DP=552;set=Intersection	GT:AD:AF:DP	1/1:0,548:1.00:548
chr21	31964916	rs9305426	A	C	17236.77	.	AC=2;AF=1.00;AN=2;DB;DP=640;set=Intersection	GT:AD:AF:DP	1/1:0,638:1.00:638
chr21	31973516	rs198915	T	A	3353.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	31973685	rs1961491	C	T	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	31992864	rs1702405	A	G	1591.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:1,63:0.98:64
chr21	32201822	rs9982910	G	T	9684.77	.	AC=2;AF=1.00;AN=2;DB;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr21	32201835	rs9982675	A	C	10232.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	32201866	rs9982755	A	G	6442.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:1,247:1.00:248
chr21	32201951	rs9982775	A	G	6799.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr21	32201969	rs35359062	GA	G	6523.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr21	32202106	rs2833118	T	A	1089.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	32434766	rs2070405	C	T	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.85;QD=26.65;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,119:1.00:119
chr21	32499473	rs2070410	A	G	7367.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;MQ=59.92;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr21	32502411	rs112890688	AG	A	37.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.785;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=2.114;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=1.377;QD=1.57;ReadPosRankSum=-1.553;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chr21	32502414	rs2070413	G	A	190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;ClippingRankSum=0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-1.227;QD=7.07;ReadPosRankSum=1.457;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:10,17:0.63:27
chr21	32524852	rs9305453	A	G	2653.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr21	32525302	rs723470	A	C	4538.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:2,168:0.99:170
chr21	32526525	rs12482307	C	T	2577.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.214;set=HC	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	33057312	rs367618143	TG	T	160.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.97;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	33073985	rs204734	T	C	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.220;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	33368188	rs2070371	T	C	5033.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	33370900	rs9305483	T	C	10789.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr21	33371123	rs10775648	C	T	19779.77	.	AC=2;AF=1.00;AN=2;DB;DP=735;set=Intersection	GT:AD:AF:DP	1/1:2,732:1.00:734
chr21	33371540	rs2070372	T	G	5607.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr21	33641152	rs8129993	A	G	409.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	33641240	rs57672040	A	AT	758.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.80;ReadPosRankSum=1.187;SOR=0.657;set=HC	GT:AD:AF:DP	0/1:16,39:0.71:55
chr21	33690293	rs2070380	C	A	812.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	33691502	rs11402028	G	GC	1420.73	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	33691754	rs958828	G	A	4929.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr21	33694224	rs3761342	C	G	8194.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr21	33710001	rs13046776	C	A	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.12;SOR=1.839;set=HC	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	33719695	rs2070378	C	T	6282.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr21	33721843	rs743306	T	C	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	33726201	rs2298363	C	T	2557.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	33730013	rs7283283	T	C	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	33740637	rs7276783	G	A	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;MQ=59.68;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	33746113	rs117415725	A	C	4070.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	33749533	rs4816431	A	C	4984.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr21	33840208	rs4816434	A	G	2066.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	33840213	rs112923132	A	AAT	783.73	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:11,25:0.69:36
chr21	33840317	rs34740520	C	CATAT	540.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	33867280	rs2096458	A	G	2067.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	33979904	.	C	CA	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.513;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=4.320;MLEAC=1;MLEAF=0.500;MQ=60.42;MQRankSum=1.054;QD=4.42;ReadPosRankSum=-1.635;SOR=0.827;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chr21	33982072	.	C	CA	208.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;ClippingRankSum=0.000;DP=165;ExcessHet=3.0103;FS=0.791;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.698;QD=1.36;ReadPosRankSum=-1.110;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:119,34:0.22:153
chr21	34099201	rs61750221	C	T	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr21	34123398	rs73196255	A	T	6793.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr21	34127438	rs202236576	TAA	T	164.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=1.770;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-1.791;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:14,10:0.42:24
chr21	34157235	rs35174687	GT	G	686.52	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:7,45:0.87:52
chr21	34165864	rs2231391	C	A	496.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	34166190	rs74617086	A	T	5409.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr21	34166343	rs2231390	C	T	8419.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chr21	34169181	rs762228	A	G	894.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;MQ=61.38;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	34169317	rs72564613	C	CT	4391.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	34538065	rs11444667	C	CT	3298.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	34540594	rs11379155	C	CT	2218.73	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	34542150	rs2834117	G	A	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr21	34617213	rs2834158	T	C	4624.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.84;SOR=0.953;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	34617729	rs2252639	A	G	1704.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	34617950	rs2252650	A	T	306.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	34624386	rs71894734	CATCT	C	3621.73	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	34624917	rs2236757	A	G	527.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	34635065	rs9984273	C	T	4866.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.12;QD=27.04;SOR=0.885;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	34660686	rs368346970	GCA	G	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.599;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=1.765;QD=4.25;ReadPosRankSum=-0.302;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chr21	34666111	rs139112783	CAA	C	495.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=3.923;MLEAC=2;MLEAF=1.000;MQ=60.42;MQRankSum=0.530;QD=22.53;ReadPosRankSum=-0.800;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:2,20:0.91:22
chr21	34666376	rs1467845	A	G	3495.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	34668747	rs3171425	A	G	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr21	34697197	rs55884088	G	GGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGT	812.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=20;set=Intersection	GT:AF:DP	1/1:1.00:18
chr21	34697264	rs2850015	T	C	1789.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	34707808	rs2243592	T	G	2368.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	34708061	rs2243594	A	G	524.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	34715699	rs2257167	G	C	4429.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr21	34726127	rs2856973	T	A	1495.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	34793706	rs2834214	C	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	34799084	.	CTA	C	76	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5000;HP=1;HapScore=1;MGOF=4;MMLQ=27;MQ=60.0;NF=4;NR=0;PP=76;QD=21.25;SC=TCTACACCCACTATATATATA;SbPval=1.0;Source=Platypus;TC=20;TCF=15;TCR=5;TR=4;WE=34799093;WS=34799074;set=Platypus	GT:AD:AF:DP	1/0:16,4:0.20:20
chr21	34839533	rs743334	A	G	4083.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr21	34878454	.	C	CT	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=2.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.78;ReadPosRankSum=1.325;SOR=0.379;set=HC	GT:AD:AF:DP	0/1:84,20:0.19:104
chr21	34900924	.	GA	G	227.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.74;ReadPosRankSum=0.914;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:54,29:0.35:83
chr21	34901062	rs57178645	TA	T	69.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.288;ClippingRankSum=0.000;DB;DP=72;ExcessHet=3.0103;FS=4.802;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.09;ReadPosRankSum=0.447;SOR=1.700;set=HC	GT:AD:AF:DP	0/1:44,20:0.31:64
chr21	34903875	.	AT	A	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.090;ClippingRankSum=0.000;DP=214;ExcessHet=3.0103;FS=0.797;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=3.587;QD=1.85;ReadPosRankSum=-0.568;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:97,52:0.35:149
chr21	34915324	rs1041745	CG	GC	2478.73	.	AC=2;AF=1.00;AN=2;DB;DP=57;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	34925142	rs13433428	C	T	4678.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr21	34945074	.	G	GT	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.064;ClippingRankSum=-0.000;DP=20;ExcessHet=3.0103;FS=3.358;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.77;ReadPosRankSum=1.346;SOR=0.061;set=HC	GT:AD:AF:DP	0/1:7,7:0.50:14
chr21	34945721	rs3174808	T	C	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.37;QD=25.40;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	34948684	rs34377180	G	GA	5022.73	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	34948696	rs34373121	GA	G	5518.73	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	35134084	rs11444980	G	GC	5528.73	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr21	35228953	rs9305535	A	G	2981.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr21	35230921	rs2073366	G	C	2499.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	35237349	rs9984732	A	G	3140.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr21	35237608	rs9976801	T	C	2386.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	35247611	rs2298681	G	A	3851.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	35247873	rs933130	C	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	35275955	rs9980730	G	A	8658.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,333:1.00:333
chr21	35446136	rs79607614	C	G	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	35467372	rs11295804	AC	A	1043.73	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	35467472	rs11295803	AG	A	7675.73	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr21	35467645	rs8129891	A	G	4198.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr21	35469193	rs4817617	C	A	5536.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	35469708	rs35685523	G	GA	269.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	35774491	rs72279748	AT	A	370.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.003;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=0.696;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=2.138;QD=2.29;ReadPosRankSum=-1.250;SOR=0.795;set=HC	GT:AD:AF:DP	0/1:111,51:0.31:162
chr21	35893737	rs8131131	T	C	6654.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr21	35896082	rs5843666	C	CT	478.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.116;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.29;MQRankSum=0.000;QD=19.15;ReadPosRankSum=-1.158;SOR=0.387;set=HC	GT:AD:AF:DP	1/1:1,24:0.96:25
chr21	35985895	rs915540	C	T	1669.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	36041577	rs62213788	G	A	215.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.98;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	36041638	rs73357389	T	C	482.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.14;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	36041978	rs7280973	A	G	505.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	36042203	rs9680380	G	C	363.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.61;QD=24.25;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	36042462	.	GGCGTAGAAGCGGGGGTCCCGGCGGGGGACA	G	1068.73	.	AC=2;AF=1.00;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	36042579	rs13049028	C	G	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.57;QD=42.30;SOR=0.752;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	36042584	rs13049239	G	A	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.82;QD=46.53;SOR=0.826;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	36079735	rs377729689	GCA	G	185.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.02;ReadPosRankSum=-1.161;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr21	36080204	rs6517253	A	G	979.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	36165041	rs11700756	T	C	236.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	36193871	rs2018329	T	C	207.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	36206932	rs11702841	G	A	966.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.17;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	36410906	.	CTCTCTG	C	746	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5000;HP=2;HapScore=4;MGOF=43;MMLQ=25;MQ=56.78;NF=12;NR=12;PP=746;QD=31.2083333333;SC=CTCTCTCTCTCTCTCTGTGTG;SbPval=0.28;Source=Platypus;TC=49;TCF=20;TCR=29;TR=24;WE=36410919;WS=36410902;set=Platypus	GT:AD:AF:DP	0/1:25,24:0.49:49
chr21	36422282	.	AAC	A	94	.	AC=1;AF=0.500;AN=2;BRF=0.16;FR=0.5000;HP=2;HapScore=1;MGOF=3;MMLQ=15;MQ=60.0;NF=0;NR=4;PP=94;QD=24.25;SC=GTACAGTCTTAACACACACAC;SbPval=1.0;Source=Platypus;TC=20;TCF=2;TCR=18;TR=4;WE=36422293;WS=36422272;set=Platypus	GT:AD:AF:DP	1/0:16,4:0.20:20
chr21	37092980	rs9981293	G	A	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	37429679	rs7282629	G	C	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	37507501	rs8133052	G	A	7311.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr21	37507745	rs881711	C	T	6543.77	.	AC=2;AF=1.00;AN=2;DB;DP=251;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr21	37507769	rs881712	C	T	5828.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=1.035;set=HC	GT:AD:AF:DP	1/1:0,221:1.00:221
chr21	37509995	rs12626192	C	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	37518362	rs2835286	A	G	1135.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	37518893	rs113213749	C	CT	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.024;SOR=0.507;set=HC	GT:AD:AF:DP	0/1:47,11:0.19:58
chr21	37571667	rs7281674	T	A	759.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:2,27:0.93:29
chr21	37572810	rs9979031	G	A	6151.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr21	37580881	rs2835320	C	T	1340.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	37586236	rs73202247	T	C	679.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	37586877	rs2850079	T	C	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr21	37609571	rs2835322	T	C	15115.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,578:1.00:578
chr21	37625935	.	CAA	C	84.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=0.858;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:26,8:0.24:34
chr21	37665503	rs3989100	CA	C	70.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.147;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.86;ReadPosRankSum=0.278;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chr21	37749689	rs2850081	C	T	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	37763761	.	C	CA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;ClippingRankSum=0.000;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.383;QD=3.12;ReadPosRankSum=0.431;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:19,11:0.37:30
chr21	37784070	rs218630	G	A	633.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	38081562	rs2070647	T	G	7494.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr21	38081577	rs2070648	C	G	7143.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr21	38092072	rs79727992	G	A	642.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	38092247	rs145363163	GA	G	1642.73	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:24,102:0.81:126
chr21	38113998	rs2070519	C	A	1514.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	38128707	rs9977769	G	A	708.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38132172	rs2073420	C	T	7719.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr21	38302769	rs2073425	C	T	2432.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	38338651	rs1055699	C	T	999.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	38338665	rs1055700	C	G	1105.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	38338969	rs9980304	T	C	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr21	38339023	rs184468430	G	A	824.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	38437763	rs7337	C	G	347.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	38444863	rs2507733	C	T	5001.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr21	38495185	rs11440324	G	GT	1788.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	38495213	rs11440325	G	GA	2060.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	38495270	rs11440326	A	AT	3080.73	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	38498585	rs12185849	G	C	326.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	38512956	rs1133001	A	G	1450.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	38517021	rs1344047	G	A	3977.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr21	38517058	rs764175	C	T	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	38520031	rs372841981	AT	A	135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.637;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.365;MLEAC=1;MLEAF=0.500;MQ=59.32;MQRankSum=1.074;QD=3.16;ReadPosRankSum=-1.017;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chr21	38520091	rs9978203	C	T	488.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	38522353	rs35491163	GT	G	126.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.021;ClippingRankSum=0.000;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.47;ReadPosRankSum=-0.549;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:1,10:0.91:11
chr21	38522618	rs2257091	G	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	38523266	rs3737540	C	A	653.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38525198	rs2051162	G	A	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	38525356	rs1053808	T	C	3280.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	38525652	rs767998	T	G	842.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	38528866	rs2835635	A	G	1673.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	38528872	rs10706050	TG	T	1733.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	38528987	rs62223645	G	A	3171.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;MQ=60.09;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	38531863	rs4817852	T	C	556.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	38531921	rs1787365	C	A	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	38532058	rs34771928	TG	T	5185.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	38532068	rs113972351	G	GA	4184.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	38532086	rs34586966	TG	T	5430.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	38532192	rs34367119	A	AT	925.73	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	38532901	rs5843796	G	GT	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38532904	rs5843798	T	TA	277.77	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.68;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	38532910	rs5843800	A	AG	314.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	38534228	rs11424055	A	AT	1041.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	38534234	rs57522570	C	T	1081.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	38539673	rs1793885	C	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=52.72;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	38539677	rs4988831	A	T	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	38539681	rs1793886	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	38539718	rs2000413	G	A	447.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	38539745	rs5843802	G	GA	558.73	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	38539836	rs5843803	T	TA	2924.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr21	38539844	rs2000415	G	A	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	38540089	rs2000416	T	A	167.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	38563725	rs2835655	G	A	1965.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	38564530	rs202143959	CT	C	178.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=0.855;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=1.535;QD=1.62;ReadPosRankSum=3.043;SOR=0.851;set=HC	GT:AD:AF:DP	0/1:82,28:0.25:110
chr21	38567902	rs2835659	C	T	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.72;SOR=2.210;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	38567911	rs7280251	T	C	5953.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.23;SOR=1.973;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr21	38568009	rs1053966	G	C	11433.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr21	38568308	rs6579	C	T	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	38570055	rs34505047	T	TAA	277.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.43;ReadPosRankSum=-1.372;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chr21	38574018	rs1053984	C	T	270.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	38599934	rs11300896	TG	T	4104.73	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	38600154	rs10716173	CG	C	889.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	38850640	rs928763	G	A	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr21	38862862	rs67837743	C	T	358.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	38997701	rs702859	G	A	8340.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,316:1.00:316
chr21	39086965	rs2070995	T	C	5831.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr21	39089242	rs3061015	ACT	A	2889.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	39089582	rs857961	A	G	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.04;SOR=1.347;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	39213020	rs2836016	G	A	1643.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.40;SOR=1.460;set=HC	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	39671476	rs2230033	G	A	6914.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr21	39774634	.	CAAAA	C	33.94	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.31;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chr21	39818923	rs2836409	G	C	5763.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chr21	39822650	rs2211871	G	T	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	39822906	rs9305648	G	C	6082.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr21	39823349	rs2051165	T	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	39870310	rs2836441	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	40250361	rs11464500	T	TAAA	1933.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.19;QD=35.16;SOR=1.259;set=HC	GT:AD:AF:DP	1/1:3,52:0.95:55
chr21	40250762	rs5843936	GA	G	6531.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr21	40250766	rs1569306	G	A	6540.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr21	40547387	rs9305670	A	G	753.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	40549289	rs2142111	G	C	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	40549466	rs14194	T	C	1485.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.36;SOR=0.865;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	40551943	rs34227163	A	G	14118.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=321;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr21	40551944	rs3835285	G	GT	14109.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chr21	40552408	rs7280375	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	40553845	rs6517522	T	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.23;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	40555160	rs34294410	C	G	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,375:1.00:375
chr21	40555351	rs13052882	G	C	7129.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr21	40571246	rs1041439	A	G	7898.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr21	40572072	rs2234543	G	A	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	40582181	rs35580733	TAG	T	772.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	40584598	rs6517529	C	T	2218.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.867;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	40587003	rs11434832	G	GC	762.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	40587049	rs4818004	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	40590624	rs35571600	A	C	2459.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	40597215	rs139986112	A	AAAG	3143.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr21	40600313	rs11702268	T	C	640.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	40619887	rs2836955	G	A	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	40636354	rs58999088	TAAA	T	1898.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=2.533;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=21.10;ReadPosRankSum=-2.180;SOR=1.046;set=HC	GT:AD:AF:DP	1/1:5,85:0.94:90
chr21	40637047	.	G	GA	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=1.387;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr21	40642189	rs6517532	C	T	1949.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	40642386	rs2836968	A	G	323.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	40646230	.	CGAGA	C,CGA	4165.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.030;ClippingRankSum=0.000;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.13;MQRankSum=0.281;QD=28.93;ReadPosRankSum=-1.997;SOR=0.587;set=HC	GT:AD:AF:DP	1/2:4,26,114:0.18,0.79:144
chr21	40650621	rs973521	G	A	2340.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.51;SOR=1.483;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	40650627	.	T	TA	100.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002;ClippingRankSum=0.000;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.206;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:66,17:0.20:83
chr21	40652142	rs2836972	G	A	6918.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr21	40684641	rs2272578	C	G	543.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	40684861	rs2297258	C	G	238.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	40684901	rs71316130	G	C	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.70;QD=30.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	40684904	rs71316131	C	G	309.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.68;QD=30.98;SOR=4.804;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr21	40685135	rs118102968	A	G	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	40685515	rs148082602	GCGC	G	1111.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	40715132	rs2070867	G	A	1985.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	40715175	rs2776308	A	G	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	40719241	rs2249666	C	T	128.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	40769017	rs1060180	G	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	40778182	rs11558767	C	T	7600.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr21	40799955	rs2837028	A	C	144.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	40823860	rs61732692	A	G	3333.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	40823981	rs6517549	G	A	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr21	40847249	rs760284	T	G	2623.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	40871810	rs9974333	T	C	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr21	40880881	rs138818478	CTTGAA	C	1524.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;MQ=60.31;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	40883671	rs3831201	G	GAGA	3052.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	40969621	rs661650	C	T	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	40969826	rs662571	G	C	12758.77	.	AC=2;AF=1.00;AN=2;DB;DP=482;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chr21	40977763	rs73360110	C	T	1765.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	40977826	rs506382	A	G	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr21	40978115	rs78905016	C	T	5034.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	40981430	rs71330374	G	GA	1599.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:12,88:0.88:100
chr21	40981609	rs71316683	A	G	2958.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chr21	41032740	rs3746887	T	C	8133.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr21	41032804	rs734413	G	A	8504.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:2,316:0.99:318
chr21	41117368	rs403527	G	A	836.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	41117533	rs425320	T	C	2783.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	41137362	rs9784201	A	C	2115.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	41137507	rs2205204	G	C	13537.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;set=Intersection	GT:AD:AF:DP	1/1:0,509:1.00:509
chr21	41142775	rs73217279	A	G	389.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.84;SOR=2.985;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr21	41142803	rs2837199	T	C	413.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	41142940	rs2837200	G	A	1959.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	41143246	rs62237180	G	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	41160242	rs456818	A	G	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	41165301	rs464574	A	G	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	41165566	rs460504	T	C	9041.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr21	41165677	rs463903	G	A	911.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	41270521	rs2075719	C	T	1860.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	41270564	rs2837273	C	T	856.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	41297873	rs2037920	G	A	5535.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr21	41297992	rs2037921	C	T	12105.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr21	41298197	rs79882024	A	G	921.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	41384834	rs11451228	C	CT	159.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:6,11:0.65:17
chr21	41447313	rs378877	C	T	558.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	41506058	rs403892	A	G	1020.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	41514421	rs11701139	G	C	1501.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	41514688	rs35155500	TA	T	2181.73	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	42539569	rs11316732	AC	A	8790.73	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr21	42717662	rs417708	T	C	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	42719053	rs190096507	C	T	3918.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr21	42767733	rs440364	T	C	1055.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	42775179	rs112479250	G	GT	6536.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	42775180	rs459763	C	T	6760.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	42775555	rs462161	A	G	8428.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chr21	42803840	rs456657	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	42803858	rs463856	A	G	1191.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	42811825	rs75281064	A	T	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.16;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	42811870	rs2838037	G	A	477.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	42812891	rs467960	C	T	4492.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	42813933	rs145807679	A	AGTGT,AGTGTGT	1597.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=80;set=Intersection	GT:AF:DP	1/2:0.16,0.82:44
chr21	42817582	rs469288	A	G	733.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	42817930	rs469390	G	A	4458.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr21	42818106	rs467773	C	T	1787.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	42818132	rs364199	A	G	1090.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	42821113	rs2070229	T	C	3151.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	42822983	rs1050080	G	A	636.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	42823193	.	T	TA	34.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368;ClippingRankSum=0.000;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=1.813;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:46,12:0.21:58
chr21	42840580	rs462321	T	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	42842705	.	G	C	2118.77	.	AC=2;AF=1.00;AN=2;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr21	42842713	rs112132031	C	CCTAAGGCCTCGGG	2612.73	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr21	42843960	rs464431	A	G	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	42843960	.	AGT	GGA	1637	.	AC=2;AF=1.00;AN=2;BRF=0.11;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=23;MQ=60.0;NF=6;NR=29;PP=1637;QD=48.2990821389;SC=CAGAGCTCTCAGTGGATGAAC;SbPval=0.56;Source=Platypus;TC=35;TCF=6;TCR=29;TR=35;WE=42843970;WS=42843950;set=Platypus	GT:AD:AF:DP	1/1:0,35:1.00:35
chr21	42843962	rs458213	T	A	1670.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.97;SOR=3.145;set=HC	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	42845383	rs17854725	A	G	2925.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	42848560	rs140530035	CAG	C	10976.73	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr21	42852320	rs734056	C	A	2452.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	42860307	rs422471	C	T	950.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	42860485	rs386416	G	C	3756.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.91;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	42879909	rs75603675	C	A	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,276:1.00:276
chr21	43132878	rs11701067	T	A	1778.73	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.23;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:0,80:1.00:80
chr21	43133145	rs6586229	A	G	4345.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	43133243	rs138319143	ATTT	A	809.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.30;QD=33.74;SOR=2.049;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	43133829	rs2838096	A	G	886.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	43161357	rs3746891	T	C	8518.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:2,323:0.99:325
chr21	43169357	rs2838114	C	T	6347.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr21	43187043	rs6586238	C	T	14376.77	.	AC=2;AF=1.00;AN=2;DB;DP=541;set=Intersection	GT:AD:AF:DP	1/1:0,541:1.00:541
chr21	43187167	rs6586239	G	C	8623.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr21	43221483	rs3850706	A	G	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	43221826	rs2236696	T	C	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr21	43231296	rs28461265	A	T	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chr21	43231342	rs28484650	C	T	2501.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	43236107	rs114337111	C	T	14641.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,553:1.00:553
chr21	43236252	rs28657504	A	G	4988.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr21	43239972	rs28477638	A	G	12777.77	.	AC=2;AF=1.00;AN=2;DB;DP=496;set=Intersection	GT:AD:AF:DP	1/1:0,494:1.00:494
chr21	43240102	rs138548984	C	T	3335.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr21	43240693	rs73375543	C	T	908.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	43243585	rs28545527	A	G	6323.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr21	43246223	rs28559700	C	T	2419.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	43254463	rs2839388	A	G	4193.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	43255359	rs2839391	G	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	43255606	rs151294336	C	T	9617.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:1,360:1.00:361
chr21	43255727	rs2839393	T	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:1,73:0.99:74
chr21	43256072	.	G	GGCCTCGCCCGCTCTCCTCCCT	108.06	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.99;QD=36.02;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr21	43256076	.	C	CCACAGGCCT	196.82	.	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.99;QD=39.36;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr21	43256082	rs8132216	A	G	205.85	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.12;QD=34.31;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	43256252	rs4920098	C	T	4811.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr21	43256438	rs4920101	T	A	1455.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	43258000	rs8127003	T	C	2586.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	43258353	rs6586335	G	A	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	43267260	rs2277793	C	T	4281.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.846;set=HC	GT:AD:AF:DP	1/1:0,166:1.00:166
chr21	43274653	rs2277794	C	T	2787.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	43281651	rs7280316	C	G	273.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	43298954	rs202107842	C	CG	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.08;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	43299354	rs141709929	G	C	1790.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.73;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	43309191	rs2839403	A	G	380.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	43315057	rs2839411	C	T	3558.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	43319534	rs511247	A	C	1659.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	43319605	rs2839416	T	G	463.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	43325742	rs35279709	CA	C	3210.73	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	43327856	rs3746906	A	G	3619.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	43332605	rs201192263	T	TA	849.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.07;QD=42.49;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	43332608	rs11387062	T	TA	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.57;QD=45.41;SOR=1.292;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	43332611	rs11387061	T	TA	890.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.88;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	43332623	rs2026283	A	G	674.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr21	43334669	rs3746907	G	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	43334896	rs3746908	A	G	2544.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	43342272	.	CT	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.585;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=6.160;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.14;ReadPosRankSum=-1.500;SOR=2.636;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chr21	43413731	rs915837	C	T	7621.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr21	43519032	rs220312	G	A	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,135:1.00:135
chr21	43522349	rs220109	T	C	10997.77	.	AC=2;AF=1.00;AN=2;DB;DP=432;set=Intersection	GT:AD:AF:DP	1/1:0,431:1.00:431
chr21	43523941	rs220111	C	A	11509.77	.	AC=2;AF=1.00;AN=2;DB;DP=436;set=Intersection	GT:AD:AF:DP	1/1:0,435:1.00:435
chr21	43529515	rs220120	G	C	1472.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	43529548	rs35742122	A	AG	3404.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	43529819	rs11203186	G	A	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	43530897	rs220125	G	A	2709.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr21	43531008	rs220126	T	C	8442.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr21	43531403	rs220127	C	G	5281.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:12,190:0.94:202
chr21	43531553	rs220128	A	C	18684.77	.	AC=2;AF=1.00;AN=2;DB;DP=679;set=Intersection	GT:AD:AF:DP	1/1:0,677:1.00:677
chr21	43531632	rs220129	T	C	26533.77	.	AC=2;AF=1.00;AN=2;DB;DP=1002;set=Intersection	GT:AD:AF:DP	1/1:1,997:1.00:998
chr21	43531848	rs220131	C	T	8046.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr21	43539523	rs220147	C	T	869.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	43541342	rs220150	C	T	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.02;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	43541478	.	CGTGT	C,CGT	700.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.044;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=25.03;ReadPosRankSum=0.224;SOR=1.022;set=HC	GT:AD:AF:DP	1/2:3,7,18:0.25,0.64:28
chr21	43546705	rs220157	T	C	2098.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr21	43547788	rs220158	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=1.455;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr21	43547873	rs220159	G	A	6415.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr21	43557736	rs220178	G	A	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.05;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	43693584	rs225400	G	C	3345.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr21	43693693	rs225401	G	A	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	43711805	rs55934803	T	G	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	43720525	rs1023156	A	G	3072.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:4,113:0.97:117
chr21	43766560	rs225334	G	A	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr21	43767500	rs225337	T	A	3564.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	43786512	rs225358	C	T	5059.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr21	43808964	rs225432	T	A	226.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr21	43823910	rs2277797	A	G	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	43824106	rs2277798	A	G	3402.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	43824123	rs2277799	G	C	3091.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.43;SOR=0.781;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	43826344	rs3746923	C	T	11998.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,458:1.00:458
chr21	43826391	rs3746924	T	C	11980.77	.	AC=2;AF=1.00;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr21	43829729	rs201946974	C	T	4141.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr21	43829758	rs11702374	G	A	2935.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr21	43846729	rs2839509	A	G	3252.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr21	43862466	rs2254368	G	A	694.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	43863521	rs868092	A	G	6101.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chr21	43864519	rs4920104	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	43896143	rs117385282	C	T	15879.77	.	AC=2;AF=1.00;AN=2;DB;DP=603;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr21	43897355	rs11702140	C	T	376.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	43955427	rs228056	A	G	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	43959770	rs228063	A	G	5812.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr21	43963759	rs228075	A	G	1377.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	43984126	rs7282730	C	T	2022.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr21	43985016	rs915874	G	A	837.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	43985955	rs228104	G	A	6429.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chr21	43986117	rs36113965	T	TC	6978.73	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chr21	43986175	rs4919992	C	T	1940.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	43987325	rs9977293	C	T	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.26;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	43987329	rs9979646	G	C	2116.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.04;SOR=1.659;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	43988437	rs7280392	G	A	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,306:1.00:306
chr21	43999983	rs453592	T	C	2967.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	44000052	rs380152	A	G	1676.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr21	44000063	rs380161	T	G	1630.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	44000078	rs453647	T	C	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	44000366	rs388907	A	G	2896.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	44073833	rs185830982	C	G	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	44107989	rs2839574	A	G	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,281:1.00:281
chr21	44118958	rs1515755	T	A	1214.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.25;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	44163839	rs6586344	A	G	2589.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	44173971	.	CAA	C,CA	935.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.858;ClippingRankSum=0.000;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.50;MQRankSum=0.733;QD=12.00;ReadPosRankSum=-0.162;SOR=0.643;set=HC	GT:AD:AF:DP	1/2:11,24,43:0.31,0.55:78
chr21	44174275	rs4919999	T	C	1230.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=30.02;SOR=6.043;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	44180866	rs55905735	ACC	A	2713.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	44180916	rs1547379	G	A	5277.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	44182135	rs2269168	C	G	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr21	44185794	rs2284970	TC	GA	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	44188175	rs9982811	A	G	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr21	44188249	rs68104891	GC	G	3996.73	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:3,117:0.97:120
chr21	44188475	rs34734386	C	CA	3743.73	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	44188485	rs2284977	T	A	3282.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	44189277	rs113406948	TCAC	T	15312.73	.	AC=2;AF=1.00;AN=2;DB;DP=349;set=Intersection	GT:AD:AF:DP	1/1:0,342:1.00:342
chr21	44189329	rs13046985	A	G	8807.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,345:1.00:346
chr21	44190727	rs13048753	C	T	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	44270402	rs6586251	C	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	44273858	rs15736	G	A	10965.77	.	AC=2;AF=1.00;AN=2;DB;DP=407;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr21	44274845	rs1107831	A	G	7252.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,273:1.00:273
chr21	44279668	rs149300976	C	CCAGGGGCCAGCGATCCA	564.73	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=51.34;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	44293744	rs2248490	C	G	5646.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chr21	44296933	rs71332377	AT	A	5075.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:1,133:0.99:134
chr21	44296935	rs116944707	T	A	5084.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-1.823;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.08;MQRankSum=0.173;QD=37.95;ReadPosRankSum=-0.892;SOR=1.165;set=HC	GT:AD:AF:DP	1/1:1,133:0.99:134
chr21	44323590	rs4148973	T	G	3738.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr21	44324365	rs10595	G	A	3447.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	44327015	rs2839604	G	A	4651.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	44328830	rs4148976	A	G	1570.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr21	44338668	rs77912643	G	A	4338.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr21	44371114	rs451887	T	C	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;MQ=59.96;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	44424689	rs3216136	G	GA	1607.73	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:2,69:0.97:71
chr21	44430325	rs234781	T	C	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr21	44445185	rs234719	C	T	1597.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr21	44448763	rs170916	G	C	4566.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	44448775	rs234728	G	A	5787.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	44449095	rs234729	G	A	559.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	44449917	rs234733	G	A	1271.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	44452424	rs141407897	T	TTCCCTCACCACCCTCCGTCTCTTCG	915.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	44452455	rs378528	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	44488755	.	GA	G	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=1.356;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.30;ReadPosRankSum=0.084;SOR=0.384;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr21	44589215	rs872331	C	T	8140.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;set=Intersection	GT:AD:AF:DP	1/1:0,309:1.00:309
chr21	44589920	rs5844151	G	GC	601.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.04;ReadPosRankSum=1.652;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:11,29:0.72:40
chr21	44590059	rs870137	C	T	552.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	44837551	rs430552	G	A	8035.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;ClippingRankSum=0.000;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=27.06;ReadPosRankSum=-0.939;SOR=0.975;set=HC	GT:AD:AF:DP	1/1:2,295:0.99:297
chr21	44837555	rs430554	G	A	13384.77	.	AC=2;AF=1.00;AN=2;DB;DP=303;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.32;SOR=0.959;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chr21	44839654	rs229346	A	G	549.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	44839682	rs13052063	G	A	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	44846016	rs3746951	C	T	11787.77	.	AC=2;AF=1.00;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	1/1:0,445:1.00:445
chr21	44985202	rs9637217	G	A	2231.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.51;QD=31.88;SOR=1.011;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	45053011	rs7277539	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	45064296	rs2246602	C	A	2012.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	45089877	rs2838344	G	A	2306.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.21;SOR=0.739;set=HC	GT:AD:AF:DP	1/1:0,88:1.00:88
chr21	45092095	rs11909064	G	C	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr21	45092257	rs2251253	T	A	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chr21	45094467	.	CT	C	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=4.732;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.119;QD=2.30;ReadPosRankSum=-0.088;SOR=1.685;set=HC	GT:AD:AF:DP	0/1:23,20:0.47:43
chr21	45096206	rs2155722	G	A	6750.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr21	45107285	rs2838348	C	G	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	45107518	rs7279959	A	G	6355.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chr21	45107562	rs9306160	T	C	5983.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr21	45111512	.	A	AT	286.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.256;ClippingRankSum=0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=20.48;ReadPosRankSum=0.504;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:1,13:0.93:14
chr21	45153751	rs13050307	A	G	541.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	45168884	rs11539534	G	A	4285.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr21	45168923	rs61737062	G	A	5552.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,213:1.00:213
chr21	45170285	rs1106797	A	G	5928.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr21	45175958	rs7527	T	C	5462.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	45196323	.	CGCGCGGGGCGGG	C	534.73	.	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.56;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	45210932	rs2276246	G	A	1464.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr21	45214953	rs2838370	G	T	1015.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	45215046	rs2838371	T	C	9332.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=1.000;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr21	45215051	rs2838372	A	G	9613.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.70;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,220:1.00:220
chr21	45217456	rs2070537	G	A	5101.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr21	45217559	rs2838378	T	C	8330.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr21	45220570	rs731935	T	C	1109.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	45220626	rs3216106	A	AC	1059.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	45220787	rs2329576	A	G	4524.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr21	45222058	rs4818868	A	G	314.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	45388079	rs11324107	CG	C	2083.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	45405278	rs112367723	TA	T	123.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=7.715;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.246;QD=3.54;ReadPosRankSum=-1.876;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:19,16:0.46:35
chr21	45514141	rs11287102	TG	T	796.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	45514149	rs9941801	A	G	805.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr21	45514168	rs4819371	C	T	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	45514188	rs4818879	A	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	45527112	rs72257518	GCTC	G	817.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	45527460	rs2850153	G	A	1241.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	45528919	rs2020945	G	A	7492.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr21	45534032	rs2243999	C	T	7242.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:2,273:0.99:275
chr21	45538512	rs5844173	TG	T	3408.73	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	45538647	rs756553	T	C	11269.77	.	AC=2;AF=1.00;AN=2;DB;DP=421;set=Intersection	GT:AD:AF:DP	1/1:0,421:1.00:421
chr21	45538725	rs756554	C	A	8032.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr21	45538782	rs756555	A	T	3238.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	45539240	rs2855652	G	C	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	45539426	rs2071142	G	A	5030.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	45540143	rs2855653	G	A	1192.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr21	45540207	rs2850157	C	T	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	45540919	rs2071143	A	G	14360.77	.	AC=2;AF=1.00;AN=2;DB;DP=559;set=Intersection	GT:AD:AF:DP	1/1:0,555:1.00:555
chr21	45544594	rs2187313	T	C	6585.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	45547736	rs368215943	T	TAA	773.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=24.18;SOR=1.893;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	45550460	rs11311220	TC	T	1257.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr21	45553430	rs2187314	A	C	6377.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr21	45553476	rs968713	A	C	11397.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;set=Intersection	GT:AD:AF:DP	1/1:0,426:1.00:426
chr21	45553596	rs968714	T	C	14589.77	.	AC=2;AF=1.00;AN=2;DB;DP=543;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr21	45560331	rs2838492	C	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	45561039	rs1059813	T	C	17010.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr21	45564575	rs2838496	G	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr21	45565473	rs7676	C	T	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=0.924;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr21	45648992	rs7278940	T	C	6385.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:1,243:1.00:244
chr21	45649494	rs7278772	A	G	2659.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.60;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,61:1.00:61
chr21	45649499	rs9974245	G	A	2569.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=3.080;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=40.79;ReadPosRankSum=2.716;SOR=0.163;set=HC	GT:AD:AF:DP	1/1:2,61:0.97:63
chr21	45649778	rs4568033	A	G	8048.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,308:1.00:308
chr21	45649848	rs13052840	T	C	7871.77	.	AC=2;AF=1.00;AN=2;DB;DP=290;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr21	45650008	rs145424134	A	AC	2024.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:2,67:0.97:69
chr21	45650009	rs2236668	T	G	3437.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:2,85:0.98:87
chr21	45651413	rs3746962	A	G	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr21	45674629	rs55831401	G	A	4125.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	45675877	rs2070563	G	T	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	45681153	rs2070565	T	C	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	45709906	rs1800520	C	G	14155.77	.	AC=2;AF=1.00;AN=2;DB;DP=522;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.02;QD=27.17;SOR=0.945;set=HC	GT:AD:AF:DP	1/1:0,521:1.00:521
chr21	45712977	rs1800521	T	C	4213.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr21	45714520	rs41296229	T	C	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr21	45717412	rs3746965	G	A	2634.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	45717550	rs1133779	T	C	5883.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr21	45720202	.	CGCCCCGGCCTCCT	C	322.75	.	AC=2;AF=1.00;AN=2;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr21	45723986	rs79934442	G	C	1956.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	45724141	rs73231239	C	T	5255.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	45725621	rs73231245	G	A	2337.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	45726694	rs2070569	CC	GT	4282.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr21	45726743	rs73231246	C	T	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	45726790	rs2070571	T	C	956.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	45733445	rs17004643	T	G	5574.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr21	45733752	rs74979720	C	T	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr21	45733867	rs1057037	A	T	4631.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.06;QD=25.73;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr21	45733911	rs61750224	G	A	5312.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.05;QD=25.79;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,206:1.00:206
chr21	45741854	rs4818904	T	C	2472.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr21	45742115	rs2277808	G	A	1057.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	45742822	rs11088947	T	C	2696.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	45746214	rs4818905	A	C	1740.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	45746225	rs4818906	G	A	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr21	45750145	rs11552066	T	C	4555.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr21	45750856	rs117840172	G	A	2007.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr21	45757631	rs56242109	G	A	1300.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr21	45758231	rs73231264	G	A	6530.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr21	45758909	.	T	G	836	.	AC=2;AF=1.00;AN=2;BRF=0.37;FR=1.0000;HP=5;HapScore=1;MGOF=32;MMLQ=23;MQ=48.02;NF=29;NR=14;PP=836;QD=20.2504933151;SC=CTCCGCCCTCTCCCCGCCCCG;SbPval=0.62;Source=Platypus;TC=47;TCF=31;TCR=16;TR=43;WE=45758917;WS=45758899;set=Platypus	GT:AD:AF:DP	1/1:4,43:0.91:47
chr21	45758954	.	G	T	2234	.	AC=2;AF=1.00;AN=2;BRF=0.28;FR=1.0000;HP=4;HapScore=1;MGOF=23;MMLQ=23;MQ=57.04;NF=59;NR=50;PP=2234;QD=20.814414794;SC=GCCCCGCCCCGGCTCCTCCCC;SbPval=0.17;Source=Platypus;TC=136;TCF=85;TCR=51;TR=109;WE=45758962;WS=45758944;set=Platypus	GT:AD:AF:DP	1/1:27,109:0.80:136
chr21	45759045	rs11870	C	T	12322.77	.	AC=2;AF=1.00;AN=2;DB;DP=480;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr21	45759197	rs73374031	G	C	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr21	45789011	rs34543751	A	AG	2188.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	45815552	.	G	GAGGGGTGTGGAGGGGTGTGGAAGCTGTGA	2987	.	AC=2;AF=1.00;AN=2;BRF=0.27;FR=1.0000;HP=1;HapScore=1;MGOF=3;MMLQ=17;MQ=58.75;NF=0;NR=24;PP=2987;QD=20;SC=GGAGGCTGTGGAGGGGTGTGG;SbPval=1.0;Source=Platypus;TC=67;TCF=1;TCR=66;TR=24;WE=45815560;WS=45815542;set=Platypus	GT:AD:AF:DP	1/1:43,24:0.36:67
chr21	45844751	rs9978351	A	G	2494.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr21	45845807	rs762428	C	T	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr21	45854925	rs41277556	G	A	3388.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr21	45929090	rs147258456	G	A	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr21	45942111	rs233230	A	G	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	45959195	rs233316	G	A	7322.77	.	AC=2;AF=1.00;AN=2;DB;DP=269;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr21	45959312	rs233317	C	T	12027.77	.	AC=2;AF=1.00;AN=2;DB;DP=434;set=Intersection	GT:AD:AF:DP	1/1:0,432:1.00:432
chr21	45959386	rs233318	G	A	14044.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:12,519:0.98:531
chr21	45959556	.	A	ATG	29779.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=679;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=44.98;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,662:1.00:662
chr21	45959557	.	ATC	TGA	2937	.	AC=2;AF=1.00;AN=2;BRF=0.24;FR=1.0000;HP=1;HapScore=1;MGOF=1;MMLQ=25;MQ=59.85;NF=267;NR=299;PP=2937;QD=20;SC=ATGAAGAGGAATCCTCAGAGC;SbPval=0.52;Source=Platypus;TC=594;TCF=282;TCR=312;TR=566;WE=45959567;WS=45959547;set=Platypus	GT:AD:AF:DP	1/1:28,566:0.95:594
chr21	45959557	.	ATC	A	29779.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=651;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=45.81;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,650:1.00:650
chr21	45959918	rs233320	G	A	4426.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr21	45978488	rs12483390	G	A	6689.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	45978499	rs377549	T	G	6798.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.87;QD=45.02;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	45978503	rs435424	G	A	6827.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.10;QD=45.22;SOR=1.076;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	45978587	rs448908	A	G	13205.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.27;QD=44.61;SOR=0.792;set=HC	GT:AD:AF:DP	1/1:0,296:1.00:296
chr21	45978592	rs452472	T	C	13089.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.25;QD=44.83;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,292:1.00:292
chr21	45993746	rs200779717	C	T	3522.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:13,136:0.91:149
chr21	45994842	rs75473696	C	T	12724.77	.	AC=2;AF=1.00;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	1/1:0,488:1.00:488
chr21	46011149	rs62220886	T	C	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:35,11:0.24:46
chr21	46011170	rs233302	T	C	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	46012240	rs543542	A	G	1671.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=48.88;QD=26.54;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr21	46020473	rs113686885	C	CTCAT	12504.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr21	46020527	rs1211103	C	T	11133.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,419:1.00:419
chr21	46020655	rs36208679	CCTGCTGCGCCCCCAG	C	649.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.866;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=15.228;MLEAC=1;MLEAF=0.500;MQ=48.72;MQRankSum=-0.634;QD=14.77;ReadPosRankSum=-2.723;SOR=2.833;set=HC	GT:AD:AF:DP	0/1:26,18:0.41:44
chr21	46021088	rs388827	C	T	3114.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.543;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=91.912;MLEAC=1;MLEAF=0.500;MQ=43.65;MQRankSum=4.626;QD=20.49;ReadPosRankSum=-0.575;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:40,112:0.74:152
chr21	46021179	rs363877	C	A	9677.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:2,360:0.99:362
chr21	46021205	rs389167	C	T	13297.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.31;QD=25.57;SOR=1.059;set=HC	GT:AD:AF:DP	1/1:0,520:1.00:520
chr21	46021370	rs437149	T	C	29598.77	.	AC=2;AF=1.00;AN=2;DB;DP=706;set=Intersection	GT:AD:AF:DP	1/1:0,705:1.00:705
chr21	46021390	rs446817	G	C	28596.77	.	AC=2;AF=1.00;AN=2;DB;DP=654;set=Intersection	GT:AD:AF:DP	1/1:0,654:1.00:654
chr21	46021481	rs437334	T	C	24027.77	.	AC=2;AF=1.00;AN=2;DB;DP=546;set=Intersection	GT:AD:AF:DP	1/1:0,546:1.00:546
chr21	46021494	rs369720	A	G	24722.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,580:1.00:580
chr21	46021607	rs370092	A	G	23760.77	.	AC=2;AF=1.00;AN=2;DB;DP=919;set=Intersection	GT:AD:AF:DP	1/1:0,917:1.00:917
chr21	46021746	rs79571149	C	T	4850.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr21	46021759	rs659638	A	G	3662.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	46032094	rs411254	A	G	9614.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chr21	46047418	rs8126553	C	T	19623.77	.	AC=2;AF=1.00;AN=2;DB;DP=731;set=Intersection	GT:AD:AF:DP	1/1:0,727:1.00:727
chr21	46047633	rs8127342	A	G	28512.77	.	AC=2;AF=1.00;AN=2;DB;DP=1038;set=Intersection	GT:AD:AF:DP	1/1:0,1036:1.00:1036
chr21	46047710	rs8131142	T	C	23177.77	.	AC=2;AF=1.00;AN=2;DB;DP=816;MQ=59.91;set=Intersection	GT:AD:AF:DP	1/1:0,815:1.00:815
chr21	46047857	rs9980129	C	T	27166.77	.	AC=2;AF=1.00;AN=2;DB;DP=1013;set=Intersection	GT:AD:AF:DP	1/1:2,1011:1.00:1013
chr21	46047925	rs9979457	G	T	21767.77	.	AC=2;AF=1.00;AN=2;DB;DP=813;set=Intersection	GT:AD:AF:DP	1/1:0,812:1.00:812
chr21	46047971	rs463217	T	C	15227.77	.	AC=2;AF=1.00;AN=2;DB;DP=557;set=Intersection	GT:AD:AF:DP	1/1:0,557:1.00:557
chr21	46048053	rs59484649	G	C	4384.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.401;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=3.297;MLEAC=2;MLEAF=1.000;MQ=56.54;MQRankSum=0.751;QD=28.85;ReadPosRankSum=0.103;SOR=2.120;set=HC	GT:AD:AF:DP	1/1:2,150:0.99:152
chr21	46048060	rs57944973	A	G	5818.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=55.95;QD=44.76;SOR=2.452;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	46057393	rs2838602	T	A	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr21	46057548	rs4818947	A	C	8141.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr21	46057612	rs66931310	CCTGCTGTGTGCCTGT	C	19271.73	.	AC=2;AF=1.00;AN=2;DB;DP=467;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr21	46057806	rs4818950	G	A	15996.77	.	AC=2;AF=1.00;AN=2;DB;DP=601;set=Intersection	GT:AD:AF:DP	1/1:0,600:1.00:600
chr21	46057958	rs4818951	C	T	13870.77	.	AC=2;AF=1.00;AN=2;DB;DP=523;set=Intersection	GT:AD:AF:DP	1/1:0,523:1.00:523
chr21	46058060	rs13051517	C	T	11634.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,433:1.00:433
chr21	46058229	rs1785474	A	T	331.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.32;QD=30.16;SOR=4.977;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr21	46066764	rs4818952	C	T	16782.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,607:1.00:607
chr21	46067180	rs462007	C	T	18075.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:0,664:1.00:664
chr21	46074104	rs2073437	T	C	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	46074202	rs9984726	A	G	3093.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	46077812	rs2838617	A	G	8843.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr21	46077946	rs9306111	A	G	21397.77	.	AC=2;AF=1.00;AN=2;DB;DP=823;set=Intersection	GT:AD:AF:DP	1/1:1,820:1.00:821
chr21	46078220	rs9306112	T	C	2202.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr21	46086377	rs2838622	A	G	4557.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr21	46086718	rs7275281	GA	CG	30668.77	.	AC=2;AF=1.00;AN=2;DB;DP=839;JOINED;MQ=59.99;set=Intersection	GT:AD:AF:DP	1/1:3,737:1.00:740
chr21	46086757	rs7275298	GC	AT	18710.77	.	AC=2;AF=1.00;AN=2;DB;DP=435;JOINED;set=Intersection	GT:AD:AF:DP	1/1:2,422:1.00:424
chr21	46191270	rs11569	C	T	2088.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr21	46207886	rs74778563	G	A	2028.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.35;SOR=0.828;set=HC	GT:AD:AF:DP	1/1:0,77:1.00:77
chr21	46237788	rs368758616	G	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr21	46271452	rs235314	C	T	5739.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.15;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,130:1.00:130
chr21	46271460	rs2236442	T	C	5771.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.06;SOR=0.708;set=HC	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	46271660	rs235315	A	G	502.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr21	46276343	rs35432315	C	T	4896.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr21	46281314	rs235276	T	C	2287.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr21	46281948	rs73238097	C	T	1229.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	46285416	rs67786546	T	C	4834.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr21	46293692	rs235373	T	C	2912.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr21	46308800	rs2230531	C	T	5649.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr21	46311813	rs235326	A	G	11161.77	.	AC=2;AF=1.00;AN=2;DB;DP=429;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr21	46313442	rs2230529	G	T	2881.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.50;SOR=0.711;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	46314907	rs235330	T	A	5839.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr21	46315022	rs2838725	C	T	2808.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr21	46315091	rs2838726	C	T	1083.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr21	46320403	rs5030670	C	T	1399.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	46328099	rs760462	T	C	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	46389189	rs12106389	C	T	774.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	46389212	rs79794356	A	G	641.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr21	46393090	rs3827260	C	T	4267.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr21	46554604	rs11369444	A	AT	1049.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421;ClippingRankSum=0.000;DB;DP=221;ExcessHet=3.0103;FS=3.109;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.917;QD=5.22;ReadPosRankSum=-1.436;SOR=0.456;set=HC	GT:AD:AF:DP	0/1:111,90:0.45:201
chr21	46572572	rs420085	A	G	2693.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	46602483	.	C	CT	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.974;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:76,19:0.20:95
chr21	46604363	rs35076710	AT	A	120.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=6.021;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.10;ReadPosRankSum=0.567;SOR=1.447;set=HC	GT:AD:AF:DP	0/1:4,13:0.76:17
chr21	46641968	rs1051367	G	A	14689.77	.	AC=2;AF=1.00;AN=2;DB;DP=568;set=Intersection	GT:AD:AF:DP	1/1:0,568:1.00:568
chr21	46685560	rs72316840	ATCACAGAGGTTCCAGAGTCAGGGAGAACTGGCG	A	1907.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	46698256	rs914215	T	C	619.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr21	46702506	rs2236449	C	T	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr21	46703223	.	C	CGG	117.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.60;MQRankSum=0.605;QD=9.81;ReadPosRankSum=0.618;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr21	46705345	rs2297284	G	A	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr21	46705621	rs2297285	G	A	11485.77	.	AC=2;AF=1.00;AN=2;DB;DP=426;set=Intersection	GT:AD:AF:DP	1/1:0,425:1.00:425
chr21	46825015	.	CG	C	108	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	46825018	.	CCCCTGCCCGG	C	108	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.00;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr21	46825211	.	GTCGCGGGGGT	G	1088.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	46825221	.	TC	T	492	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=5;HapScore=2;MGOF=3;MMLQ=23;MQ=59.71;NF=4;NR=3;PP=492;QD=72.4285714286;SC=GTCGCGGGGGTCGCGGGGCTC;SbPval=0.64;Source=Platypus;TC=7;TCF=4;TCR=3;TR=7;WE=46825242;WS=46825202;set=Platypus	GT:AD:AF:DP	1/1:0,7:1.00:7
chr21	46825222	.	C	CT	1087.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.51;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	46825226	.	GGGCTCGGCC	G	2985	.	AC=2;AF=1.00;AN=2;FR=1.0000;HP=3;HapScore=2;MGOF=3;MMLQ=23;MQ=59.72;NF=3;NR=3;PP=2985;QD=20;SC=GGGGGTCGCGGGGCTCGGCCG;SbPval=0.52;Source=Platypus;TC=7;TCF=3;TCR=4;TR=6;WE=46825242;WS=46825202;set=Platypus	GT:AD:AF:DP	1/1:1,6:0.86:7
chr21	46825230	.	T	TG	1132.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.31;SOR=1.136;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	46825233	.	GCC	G	1137.73	.	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.76;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	46875564	rs914230	T	C	19392.77	.	AC=2;AF=1.00;AN=2;DB;DP=732;set=Intersection	GT:AD:AF:DP	1/1:0,730:1.00:730
chr21	46896381	rs17338853	G	T	10405.77	.	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.95;SOR=0.930;set=HC	GT:AD:AF:DP	1/1:0,401:1.00:401
chr21	46899723	rs7280620	T	C	711.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	46899842	rs1131100	C	T	3033.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	46899857	rs1131101	C	T	3357.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr21	46899872	rs1131102	C	A	3945.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	46900332	rs2236465	GC	CG	18066.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr21	46900410	rs2236467	C	T	9431.77	.	AC=2;AF=1.00;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chr21	46900546	rs28608951	C	T	5401.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr21	46902180	rs12482563	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr21	46902273	rs2236468	A	G	4192.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr21	46906690	rs2246749	A	G	2064.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.89;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr21	46906710	rs79985863	C	T	2232.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.87;SOR=0.765;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	46906960	rs3818662	A	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46907338	rs73370824	C	A	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr21	46910210	rs62000962	G	A	3672.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.33;SOR=0.735;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr21	46910574	rs71240730	G	GGGTCTCT	2110.73	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	46910643	rs112239383	C	T	4974.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr21	46911276	rs62216329	G	T	2136.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr21	46911307	rs201689768	C	CA	1147.73	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr21	46912658	rs11270246	G	GCCCGCCACTGCCCT	1431.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	46912970	rs2297289	T	A	685.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.49;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	46913310	rs749626	C	G	3958.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr21	46913517	rs749627	A	G	2408.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr21	46914262	rs71324428	C	T	1398.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	46916516	rs5844240	AC	A	4495.73	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chr21	46917035	rs73370840	C	T	3542.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	46918574	rs2282120	T	C	2462.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.14;ReadPosRankSum=-0.763;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:2,100:0.98:102
chr21	46924425	rs149296338	CGGCCCCCCA	C	3792.73	.	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.76;QD=42.14;SOR=0.935;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr21	46924596	rs117560531	C	T	334.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	46927370	rs144246690	TGGGAGGGCCAGGTGCTGGGGCGGGAGAGTCGGGTGCTGGGCA	T	2675.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr21	46929467	rs1050351	G	A	9371.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr21	46929522	rs3835286	GC	G	7569.73	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr21	46930865	.	AACACCCCACATACACCCCCAAACACCCCCCACACCC	A	637.73	.	AC=2;AF=1.00;AN=2;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.52;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr21	46930909	.	ACAACACACCCCCCC	A	907.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.78;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	46930924	.	C	T	916.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.25;SOR=2.948;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	46930929	.	ACATCC	A	1357.73	.	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=59.03;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	46930948	rs116087241	A	C	2059.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=50.24;SOR=3.312;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	46930959	rs147164507	CA	C	2903.73	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.24;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	46930992	rs56335679	A	C	7450.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=0.045;ClippingRankSum=0.000;DB;DP=211;ExcessHet=3.0103;FS=4.390;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.70;ReadPosRankSum=1.909;SOR=0.304;set=HC	GT:AD:AF:DP	1/1:4,199:0.98:203
chr21	46930993	rs55690336	C	A	7450.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.991;ClippingRankSum=0.000;DB;DP=213;ExcessHet=3.0103;FS=4.388;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=36.35;ReadPosRankSum=1.856;SOR=0.303;set=HC	GT:AD:AF:DP	1/1:4,201:0.98:205
chr21	46931004	rs148407279	T	TAC	11238.73	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr21	46932328	rs7499	G	A	6367.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr21	46932383	rs8199	G	A	3042.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr21	46934826	rs1051298	G	A	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr21	46934861	rs1051296	A	C	1815.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr21	46935077	rs11284347	TAA	TA,T	998.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=71;set=Intersection	GT:AF:DP	1/1:0.94:64
chr21	46954343	rs2330184	T	C	4456.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr21	47320805	rs1547240	G	A	1446.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr21	47320884	rs200569266	G	A	4487.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:2,173:0.99:175
chr21	47329352	rs2277812	T	C	7675.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr21	47350796	rs11089031	G	A	2656.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	47410373	rs11702174	A	G	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.00;SOR=3.209;set=HC	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	47410379	rs11702175	A	G	5108.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.88;SOR=4.139;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	47410626	rs1980981	T	G	1277.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	47412524	rs760439	G	A	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47412751	rs2850173	A	C	1998.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr21	47417206	rs11701583	A	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr21	47417415	rs2276254	C	A	5756.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chr21	47417432	rs3216137	A	AG	4952.73	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:3,165:0.98:168
chr21	47417975	rs3737437	A	G	3362.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	47418728	rs141212516	C	CT	3043.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr21	47419520	rs75434097	G	A	3486.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	47419697	rs8131101	C	T	4292.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.38;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr21	47419706	rs11464071	C	CG	2086.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.865;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.512;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.76;ReadPosRankSum=-2.062;SOR=1.322;set=HC	GT:AD:AF:DP	1/1:5,76:0.94:81
chr21	47419747	rs8131632	A	G	1468.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr21	47419770	rs73908116	G	A	1087.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.29;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr21	47419780	rs8130255	G	A	916.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=48.25;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr21	47419794	rs8126900	T	C	736.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=56.67;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr21	47419804	rs8131227	C	T	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.65;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47420565	rs142824931	AGGAGGGCGGCCGGGGAG	A	9632.73	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr21	47420726	rs7276098	C	G	6350.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr21	47420761	rs7283989	G	A	6602.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.16;SOR=1.548;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr21	47420769	rs7276782	A	G	6259.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=1.644;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	47421315	rs11701124	C	T	7845.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr21	47422412	rs35796750	C	T	18878.77	.	AC=2;AF=1.00;AN=2;DB;DP=702;set=Intersection	GT:AD:AF:DP	1/1:0,701:1.00:701
chr21	47422639	rs2236485	A	G	3746.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr21	47422712	rs2236488	C	T	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr21	47423133	rs2236489	C	G	4628.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr21	47423509	rs13051496	C	T	8941.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chr21	47536582	.	C	T	512.77	.	AC=1;AF=0.500;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	0/1:87,34:0.28:121
chr21	47536840	.	T	TACACACACAC,TACACACAC	405.74	.	AC=2,0;AF=1.00,0.00;AN=2;DP=27;set=Intersection	GT:AF:DP	1/1:1.00:9
chr21	47537666	rs5844252	T	TG	847.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr21	47538050	rs7279535	G	A	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr21	47538691	rs9917540	G	T	5592.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr21	47538960	rs2839110	G	A	5639.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr21	47539790	rs3737362	A	G	5750.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.45;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,226:1.00:226
chr21	47540349	rs79433633	C	T	779.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr21	47540421	rs73159701	T	C	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.32;SOR=1.199;set=HC	GT:AD:AF:DP	1/1:0,56:1.00:56
chr21	47540842	rs55964853	G	C	3875.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:1,141:0.99:142
chr21	47541302	rs1076850	A	G	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr21	47541553	rs1077182	A	G	4166.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr21	47541986	rs9976026	T	C	6501.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.76;SOR=0.919;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr21	47542378	rs17272651	C	T	5442.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr21	47542634	rs17272671	T	C	2430.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr21	47542654	rs5844253	G	GC	3814.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr21	47542779	rs17357592	C	T	5246.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr21	47542861	rs915786	A	G	3510.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	47544451	rs141308738	GCC	G	1646.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;MQ=60.24;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr21	47544528	rs79205686	G	T	3762.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr21	47544662	rs55933135	A	G	10494.77	.	AC=2;AF=1.00;AN=2;DB;DP=401;set=Intersection	GT:AD:AF:DP	1/1:0,400:1.00:400
chr21	47545155	rs2839113	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	47545310	rs16978870	T	C	13447.77	.	AC=2;AF=1.00;AN=2;DB;DP=503;set=Intersection	GT:AD:AF:DP	1/1:0,500:1.00:500
chr21	47546244	rs13050660	T	C	2786.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	47546263	rs79666692	C	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr21	47546334	rs17272947	T	C	3597.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr21	47546382	rs16978878	C	A	8204.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	47546390	rs138363207	T	TGGCCCGGCCCGGCCC	9877.73	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chr21	47552130	rs9977394	A	G	7673.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr21	47552385	rs6652	C	T	14765.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,552:1.00:552
chr21	47552582	rs3087667	T	C	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=1.734;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr21	47552585	rs1043962	A	G	5781.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.53;SOR=1.845;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chr21	47556793	rs12774	C	T	6431.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.58;SOR=0.852;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr21	47556809	rs1047209	C	T	6053.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,237:1.00:237
chr21	47557074	rs9284510	A	G	6491.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr21	47558473	rs1047179	G	C	4496.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr21	47571383	rs34248722	C	CA	1827.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr21	47575237	rs62214040	T	C	3214.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	47581212	rs118185461	G	A	3294.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	47588646	rs11909543	G	A	843.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.57;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr21	47588735	rs58861127	A	G	500.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr21	47602719	rs55819909	G	A	3463.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,134:1.00:134
chr21	47608580	rs2968	G	A	6991.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr21	47609510	rs9717	T	C	737.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47609677	rs914247	A	G	3432.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr21	47611285	rs73144744	T	C	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	47612466	rs2187120	A	G	7615.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.97;QD=45.33;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr21	47612471	rs2187121	T	C	7994.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.53;QD=46.48;SOR=1.070;set=HC	GT:AD:AF:DP	1/1:0,172:1.00:172
chr21	47612512	rs146297977	C	CTG	9544.73	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr21	47614469	rs2254524	A	C	5614.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chr21	47616071	rs7282841	G	C	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.63;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,100:1.00:100
chr21	47616080	rs2839140	G	A	4826.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.97;SOR=1.377;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr21	47625658	rs2839143	T	C	1610.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr21	47626728	rs16978976	C	T	15446.77	.	AC=2;AF=1.00;AN=2;DB;DP=580;set=Intersection	GT:AD:AF:DP	1/1:0,577:1.00:577
chr21	47632995	rs2839151	T	C	1069.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr21	47633789	rs9974665	C	G	9449.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr21	47635176	rs34115287	T	C	2143.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;MQ=60.13;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr21	47635302	rs5844259	T	TC	858.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47635627	rs9980968	C	G	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:1,192:0.99:193
chr21	47635713	rs11701729	G	A	5387.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr21	47635856	rs2839153	C	G	866.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr21	47639492	rs2277826	C	G	10738.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chr21	47641700	rs2839157	G	T	845.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr21	47641794	rs2839158	C	T	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr21	47642609	rs11558754	G	A	8756.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:0,330:1.00:330
chr21	47647618	.	G	GA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.303;ClippingRankSum=0.000;DP=257;ExcessHet=3.0103;FS=2.443;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.969;QD=0.22;ReadPosRankSum=2.100;SOR=0.921;set=HC	GT:AD:AF:DP	0/1:188,34:0.15:222
chr21	47648729	.	CCCCGCCCCT	C	3310.73	.	AC=2;AF=1.00;AN=2;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr21	47656712	rs2839166	T	C	2754.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.99;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr21	47662913	.	A	C,AC	2402.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.910;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=11.059;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.12;MQRankSum=0.229;QD=27.30;ReadPosRankSum=1.557;SOR=1.977;set=HC	GT:AD:AF:DP	1/2:2,65,21:0.74,0.24:88
chr21	47676948	rs17176611	A	C	2532.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr21	47685171	.	G	A	578.77	.	AC=1;AF=0.500;AN=2;DP=73;set=Intersection	GT:AD:AF:DP	0/1:42,30:0.42:72
chr21	47685787	rs9637172	T	C	3481.77	.	AC=1;AF=0.500;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	0/1:329,188:0.36:517
chr21	47685939	rs2839181	A	G	3186.77	.	AC=1;AF=0.500;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	0/1:223,162:0.42:385
chr21	47686152	rs2839182	C	T	2525.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:1,67:0.99:68
chr21	47686174	rs4818831	T	C	1937.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:1,43:0.98:44
chr21	47687144	rs2839183	G	A	1127.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:17,44:0.72:61
chr21	47692531	rs17182739	T	C	2374.77	.	AC=1;AF=0.500;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	0/1:211,125:0.37:336
chr21	47692798	rs2839188	C	T	323.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chr21	47695395	rs2839191	C	G	855.77	.	AC=1;AF=0.500;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	0/1:51,38:0.43:89
chr21	47697650	rs17182664	A	G	1077.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.349;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.857;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.99;ReadPosRankSum=0.519;SOR=0.832;set=HC	GT:AD:AF:DP	0/1:30,53:0.64:83
chr21	47699856	rs2839195	G	A	765.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr21	47700498	rs4438580	C	T	5378.77	.	AC=1;AF=0.500;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	0/1:139,250:0.64:389
chr21	47700666	rs75145622	C	A	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:66,46:0.41:112
chr21	47703455	.	C	CA	259.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DP=225;ExcessHet=3.0103;FS=0.682;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.742;QD=1.25;ReadPosRankSum=-0.210;SOR=0.602;set=HC	GT:AD:AF:DP	0/1:164,44:0.21:208
chr21	47703649	rs11702450	G	A	1870.77	.	AC=1;AF=0.500;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	0/1:38,80:0.68:118
chr21	47704896	rs9975588	G	A	3791.77	.	AC=1;AF=0.500;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	0/1:79,159:0.67:238
chr21	47705237	rs17176131	T	C	1172.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:118,69:0.37:187
chr21	47707039	.	T	TAAAAA	311	.	AC=1;AF=0.500;AN=2;BRF=0.13;FR=0.5000;HP=10;HapScore=1;MGOF=4;MMLQ=25;MQ=60.0;NF=0;NR=27;PP=311;QD=11.962962963;SC=TTTCATGAGGTAAAAAAAAAA;SbPval=1.0;Source=Platypus;TC=81;TCF=3;TCR=78;TR=27;WE=47707058;WS=47707029;set=Platypus	GT:AD:AF:DP	1/0:54,27:0.33:81
chr21	47707050	rs61182475	T	A	775.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.627;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.17;ReadPosRankSum=0.192;SOR=0.789;set=HC	GT:AD:AF:DP	0/1:69,26:0.27:95
chr21	47711229	rs2276257	A	G	933.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:110,54:0.33:164
chr21	47716230	rs1888539	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:70,28:0.29:98
chr21	47717350	rs2839206	C	G	62.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.102;ClippingRankSum=0.000;DB;DP=19;ExcessHet=3.0103;FS=5.161;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=0.451;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chr21	47717493	rs61736728	G	T	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr21	47717616	rs8651	G	A	5096.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	47717686	rs2839207	G	A	603.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:60,34:0.36:94
chr21	47722391	rs1556337	A	G	862.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=2.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.30;ReadPosRankSum=-1.142;SOR=0.432;set=HC	GT:AD:AF:DP	0/1:58,46:0.44:104
chr21	47722530	rs4365550	G	A	2892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=2.709;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.07;ReadPosRankSum=-0.695;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:67,113:0.63:180
chr21	47722578	rs1974171	G	C	988.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627;ClippingRankSum=0.000;DB;DP=118;ExcessHet=3.0103;FS=8.583;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.38;ReadPosRankSum=0.223;SOR=0.422;set=HC	GT:AD:AF:DP	0/1:64,54:0.46:118
chr21	47722610	rs1556338	C	G	1060.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chr21	47734842	rs117095783	A	G	13120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.535;ClippingRankSum=0.000;DB;DP=481;ExcessHet=3.0103;FS=0.559;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.33;ReadPosRankSum=-0.222;SOR=0.688;set=HC	GT:AD:AF:DP	0/1:155,325:0.68:480
chr21	47734842	.	ACG	GCA	2944	.	AC=1;AF=0.500;AN=2;BRF=0.21;FR=0.5000;HP=1;HapScore=1;MGOF=2;MMLQ=28;MQ=59.95;NF=146;NR=140;PP=2944;QD=20;SC=GGGAGCCCCAACGCCACAGAG;SbPval=0.5;Source=Platypus;TC=430;TCF=223;TCR=207;TR=286;WE=47734852;WS=47734832;set=Platypus	GT:AD:AF:DP	0/1:144,286:0.67:430
chr21	47734844	rs114869542	G	A	13120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.907;ClippingRankSum=0.000;DB;DP=482;ExcessHet=3.0103;FS=0.556;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=27.28;ReadPosRankSum=0.193;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:157,324:0.67:481
chr21	47735137	rs79241392	C	T	262.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,12:0.33:36
chr21	47744037	rs3842460	CG	C	2005.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr21	47744127	rs138595914	G	T	1008.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.362;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=1.312;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.59;ReadPosRankSum=0.221;SOR=0.831;set=HC	GT:AD:AF:DP	0/1:96,57:0.37:153
chr21	47744202	rs80017051	C	T	655.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:84,39:0.32:123
chr21	47766113	rs34500739	T	G	1650.77	.	AC=1;AF=0.500;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	0/1:120,81:0.40:201
chr21	47766139	rs9982233	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chr21	47766650	rs2839217	G	A	3541.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:63,160:0.72:223
chr21	47767482	rs79850630	C	T	2096.77	.	AC=1;AF=0.500;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	0/1:232,118:0.34:350
chr21	47771565	rs2839219	A	G	1066.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:29,48:0.62:77
chr21	47773103	rs2249057	C	A	5381.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:143,243:0.63:386
chr21	47774039	rs117007201	T	C	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	0/1:53,34:0.39:87
chr21	47776845	rs17297961	G	A	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:5,7:0.58:12
chr21	47777063	rs2839223	G	A	3995.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr21	47777222	rs2839224	A	G	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr21	47783796	rs8131546	T	C	6244.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr21	47786449	rs9637173	T	A,G	4877.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=202;set=Intersection	GT:AF:DP	1/2:0.57,0.43:202
chr21	47786494	rs2839226	C	T	4246.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:145,195:0.57:340
chr21	47786817	rs2839228	C	G	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr21	47787002	rs6518289	T	C	4270.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr21	47805663	rs2073378	C	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:87,46:0.35:133
chr21	47808869	.	A	AT	256.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chr21	47811272	rs3737438	C	T	298.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:18,15:0.45:33
chr21	47817563	rs79407815	G	T	375.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:23,16:0.41:39
chr21	47821588	rs6518291	A	G	2787.77	.	AC=1;AF=0.500;AN=2;DB;DP=451;set=Intersection	GT:AD:AF:DP	0/1:294,156:0.35:450
chr21	47831309	rs58559714	G	A	1084.77	.	AC=1;AF=0.500;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	0/1:120,61:0.34:181
chr21	47831509	rs35940413	A	G	3026.77	.	AC=1;AF=0.500;AN=2;DB;DP=455;set=Intersection	GT:AD:AF:DP	0/1:290,162:0.36:452
chr21	47831618	rs16979162	C	T	9240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;ClippingRankSum=0.000;DB;DP=712;ExcessHet=3.0103;FS=0.537;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.98;ReadPosRankSum=1.829;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:452,260:0.37:712
chr21	47831621	rs61735811	C	T	9127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.037;ClippingRankSum=0.000;DB;DP=697;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.10;ReadPosRankSum=2.402;SOR=0.735;set=HC	GT:AD:AF:DP	0/1:447,250:0.36:697
chr21	47831845	rs34268261	G	A	1660.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:161,93:0.37:254
chr21	47832019	rs73907502	T	C	1741.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.358;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=0.707;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.28;ReadPosRankSum=0.271;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:64,50:0.44:114
chr21	47832029	rs73379348	T	G	1567.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.834;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:56,41:0.42:97
chr21	47832040	rs73909504	G	A	626.77	.	AC=1;AF=0.500;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	0/1:42,32:0.43:74
chr21	47832955	rs112334245	C	T	804.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:71,41:0.37:112
chr21	47835880	rs3058055	C	CCT	124.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.240;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=-0.042;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chr21	47836122	rs2839245	T	C	1458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=1.044;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.77;ReadPosRankSum=-0.837;SOR=0.589;set=HC	GT:AD:AF:DP	0/1:169,84:0.33:253
chr21	47836206	rs35978208	A	C	3521.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.537;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.22;ReadPosRankSum=-0.834;SOR=0.755;set=HC	GT:AD:AF:DP	0/1:273,109:0.29:382
chr21	47836216	rs60444527	A	G	3560.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305;ClippingRankSum=0.000;DB;DP=401;ExcessHet=3.0103;FS=2.986;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.92;ReadPosRankSum=-1.492;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:288,111:0.28:399
chr21	47836395	rs1044998	T	G	3386.77	.	AC=1;AF=0.500;AN=2;DB;DP=533;set=Intersection	GT:AD:AF:DP	0/1:345,187:0.35:532
chr21	47836547	rs35346764	T	C	2241.77	.	AC=1;AF=0.500;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	0/1:179,120:0.40:299
chr21	47836653	rs2070425	C	T	3559.77	.	AC=1;AF=0.500;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	0/1:89,162:0.65:251
chr21	47838112	rs140307278	T	TATCTG	673.73	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:37,18:0.33:55
chr21	47838123	rs2839246	A	G	334.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:46,20:0.30:66
chr21	47838421	rs60124276	T	C	656.77	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:29,33:0.53:62
chr21	47841791	rs111962882	G	A	309.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.825;ClippingRankSum=0.000;DB;DP=62;ExcessHet=3.0103;FS=4.851;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.00;ReadPosRankSum=-0.928;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:43,19:0.31:62
chr21	47841933	rs61735815	T	C	3681.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.815;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=2.561;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.51;ReadPosRankSum=-1.772;SOR=0.834;set=HC	GT:AD:AF:DP	0/1:212,108:0.34:320
chr21	47841941	rs7277175	A	G	3503.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=4.694;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.62;ReadPosRankSum=0.389;SOR=0.822;set=HC	GT:AD:AF:DP	0/1:229,101:0.31:330
chr21	47841989	rs61735814	C	T	1387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.225;ClippingRankSum=0.000;DB;DP=315;ExcessHet=3.0103;FS=0.964;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.45;ReadPosRankSum=0.136;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:224,88:0.28:312
chr21	47845662	rs78995522	G	A	416.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:26,20:0.43:46
chr21	47845936	rs2330435	T	C	2088.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=1.926;MLEAC=1;MLEAF=0.500;MQ=61.09;MQRankSum=-3.385;QD=10.24;ReadPosRankSum=-0.760;SOR=0.533;set=HC	GT:AD:AF:DP	0/1:139,65:0.32:204
chr21	47845942	rs2330436	T	C	2007.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.610;MLEAC=1;MLEAF=0.500;MQ=61.18;MQRankSum=-3.281;QD=10.68;ReadPosRankSum=-0.254;SOR=0.612;set=HC	GT:AD:AF:DP	0/1:131,57:0.30:188
chr21	47845988	.	T	TTTTC	887.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.378;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=64.59;MQRankSum=3.472;QD=22.19;ReadPosRankSum=2.218;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:8,32:0.80:40
chr21	47847700	rs61735817	C	T	597.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:74,33:0.31:107
chr21	47847757	rs55937012	G	A	408.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:32,19:0.37:51
chr21	47848350	rs61735818	G	A	1862.77	.	AC=1;AF=0.500;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	0/1:165,99:0.38:264
chr21	47848459	rs2839256	G	A	763.77	.	AC=1;AF=0.500;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	0/1:97,45:0.32:142
chr21	47848554	rs60356719	G	A	407.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chr21	47850155	rs1023160	G	C	1154.77	.	AC=1;AF=0.500;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	0/1:91,53:0.37:144
chr21	47850405	rs2839257	C	T	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.28;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chr21	47850484	rs2070426	G	C	1376.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:45,68:0.60:113
chr21	47851636	rs743346	G	A	1799.77	.	AC=1;AF=0.500;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	0/1:165,92:0.36:257
chr21	47851753	rs2073376	A	G	7963.77	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:2,303:0.99:305
chr21	47852151	rs5844270	A	AG	1140.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr21	47856106	rs2236616	C	A	1262.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:30,54:0.64:84
chr21	47860764	rs2839260	T	C	1545.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:39,62:0.61:101
chr21	47862624	rs2839262	A	G	2458.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr21	47862654	rs17372047	C	T	437.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:35,22:0.39:57
chr21	47864560	rs143709505	CTTT	C	1765.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=14.440;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=0.556;QD=21.80;ReadPosRankSum=0.000;SOR=1.858;set=HC	GT:AD:AF:DP	0/1:15,66:0.81:81
chr21	47878892	rs11701121	T	C	921.77	.	AC=1;AF=0.500;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	0/1:111,53:0.32:164
chr21	47904569	rs2032111	G	A	290.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:15,13:0.46:28
chr21	47910659	rs9976530	A	G	1180.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:33,50:0.60:83
chr21	47917047	rs11315869	CT	C	8460.73	.	AC=2;AF=1.00;AN=2;DB;DP=409;set=Intersection	GT:AD:AF:DP	1/1:1,377:1.00:378
chr21	47917137	rs74432771	G	A	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:48,42:0.47:90
chr21	47918662	rs7283507	C	G	7751.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;set=Intersection	GT:AD:AF:DP	0/1:231,357:0.61:588
chr21	47957332	rs2070432	G	A	5917.77	.	AC=1;AF=0.500;AN=2;DB;DP=356;set=Intersection	GT:AD:AF:DP	0/1:105,249:0.70:354
chr21	47959692	rs1008548	G	A	2003.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=24.44;ReadPosRankSum=-0.555;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:31,51:0.62:82
chr21	47959698	rs1008549	C	T	1994.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.271;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.133;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=23.19;ReadPosRankSum=1.130;SOR=0.464;set=HC	GT:AD:AF:DP	0/1:35,51:0.59:86
chr21	47961711	rs2070435	G	A	4427.77	.	AC=1;AF=0.500;AN=2;DB;DP=359;set=Intersection	GT:AD:AF:DP	0/1:148,209:0.59:357
chr21	47970581	rs2255397	G	A	6452.77	.	AC=1;AF=0.500;AN=2;DB;DP=488;set=Intersection	GT:AD:AF:DP	0/1:181,306:0.63:487
chr21	47971539	rs2255526	G	A	5204.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr21	47974582	rs1107065	A	G	7583.77	.	AC=1;AF=0.500;AN=2;DB;DP=655;set=Intersection	GT:AD:AF:DP	0/1:285,367:0.56:652
chr21	47978321	rs34920477	G	GC	8829.73	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,237:1.00:237
chr21	47978413	rs76448901	C	T	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:106,58:0.35:164
chr21	47980512	rs79534140	A	G	861.77	.	AC=1;AF=0.500;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	0/1:100,51:0.34:151
chr21	47980570	rs2070429	A	G	10086.77	.	AC=2;AF=1.00;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr21	47980800	rs76005530	C	T	1499.77	.	AC=1;AF=0.500;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	0/1:140,81:0.37:221
chr21	47983657	rs762253	G	A	4450.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr21	47983680	rs762254	G	A	989.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DB;DP=210;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.76;ReadPosRankSum=-1.373;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:150,58:0.28:208
chr21	47985507	rs2839332	C	T	528.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:32,24:0.43:56
chr21	47986633	rs3819044	C	A	10516.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,389:1.00:389
chr21	47987167	rs2839337	T	C	742.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:13,30:0.70:43
chr21	47987547	rs8127941	C	T	6356.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr21	48022230	rs1051169	C	G	6857.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr21	48022375	rs2186358	C	A	3156.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr21	48063476	rs10854485	C	G	591.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:17,30:0.64:47
chr21	48069930	rs2839373	T	C	238.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:18,11:0.38:29
chr21	48072916	rs2839376	G	A	778.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:60,35:0.37:95
chr21	48078611	rs2070436	G	A	4395.77	.	AC=1;AF=0.500;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	0/1:100,195:0.66:295
chr21	48081882	.	G	GTGGGGGGCGCGGAGA	588.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=3.798;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.62;ReadPosRankSum=2.103;SOR=1.688;set=HC	GT:AD:AF:DP	0/1:14,16:0.53:30
chr21	48081921	.	G	A	158	.	AC=1;AF=0.500;AN=2;BRF=0.47;FR=0.5001;HP=2;HapScore=2;MGOF=40;MMLQ=23;MQ=50.86;NF=0;NR=6;PP=158;QD=32.1285354245;SC=GGGATGGGGCGCGCAGGAGGG;SbPval=1.0;Source=Platypus;TC=9;TCF=3;TCR=6;TR=6;WE=48081929;WS=48081911;set=Platypus	GT:AD:AF:DP	1/0:3,6:0.67:9
chr21	48083526	rs77930122	T	C	322.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:37,19:0.34:56
chr22	16157603	rs370790235	G	C	146.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.10;QD=20.97;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	16157622	rs374192809	G	C	62.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	16157623	.	G	A	62.74	.	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.00;QD=31.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	16157771	.	C	A	120.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;ClippingRankSum=-0.000;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.09;MQRankSum=0.467;QD=10.06;ReadPosRankSum=0.699;SOR=1.445;set=HC	GT:AD:AF:DP	0/1:6,6:0.50:12
chr22	16157883	rs368849066	T	C	281.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=46.13;MQRankSum=-2.959;QD=9.72;ReadPosRankSum=0.390;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chr22	16157913	.	T	G	185.77	.	AC=1;AF=0.500;AN=2;DP=22;set=Intersection	GT:AD:AF:DP	0/1:11,11:0.50:22
chr22	17052871	rs7287620	A	G	422.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	17060707	rs117836313	G	A	2842.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	17063359	rs2006108	A	G	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	17063530	rs113636105	C	G	3530.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	17072483	rs2236639	A	G	12721.77	.	AC=2;AF=1.00;AN=2;DB;DP=485;set=Intersection	GT:AD:AF:DP	1/1:0,483:1.00:483
chr22	17073066	rs5747988	A	G	7651.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chr22	17265124	rs114306778	A	C	166.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.47;QD=23.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	17325892	rs74846257	CA	C	1540.73	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	17327068	rs165588	A	G	1562.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	17395705	rs79558288	G	A	2262.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.917;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	17445502	rs5748765	A	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	17446991	rs4819925	C	T	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	17449076	rs5748768	C	G	1993.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	17469026	rs5992604	G	A	1052.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	17469049	rs28502153	C	A	875.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	17488727	rs5748800	A	C	427.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	17488823	rs11378060	C	CG	2887.73	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	17565932	rs917864	T	C	11208.77	.	AC=2;AF=1.00;AN=2;DB;DP=419;set=Intersection	GT:AD:AF:DP	1/1:0,417:1.00:417
chr22	17565974	rs917865	G	C	8615.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr22	17566206	rs2270241	G	T	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	17566229	rs2270242	T	A	1114.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	17577965	rs143008696	C	T	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	17586471	rs2241046	C	T	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=25.88;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	17586610	rs11089412	T	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	17586614	rs200937197	G	GT	1181.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	17586757	rs140221307	T	C	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	17600148	rs9605220	A	G	675.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	17602839	rs5992629	G	A	3877.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	17623880	rs34058953	G	GC	2142.73	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	17629544	rs3214349	G	GA	624.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	17630378	rs2286956	G	A	268.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	17630486	rs1034859	C	A	1327.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.10;SOR=1.345;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	17640022	rs11550530	G	C	1970.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	17669151	rs2231496	C	T	2599.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.66;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	17669306	rs2231495	T	C	5092.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	17669406	rs9619005	G	C	1665.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	17956759	rs4819593	C	G	2181.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	18027817	rs35190782	CT	C	507.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=6.880;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=0.601;SOR=2.215;set=HC	GT:AD:AF:DP	0/1:9,43:0.83:52
chr22	18029943	rs182151141	C	T	1891.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	18030096	.	TAA	T,TA	1409.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.232;ClippingRankSum=0.000;DP=187;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=8.76;ReadPosRankSum=-2.428;SOR=0.732;set=HC	GT:AD:AF:DP	1/2:31,54,76:0.34,0.47:161
chr22	18032459	rs373708941	GTTTTTTTT	G	1135.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=12.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=35.49;ReadPosRankSum=1.567;SOR=2.555;set=HC	GT:AD:AF:DP	0/1:2,30:0.94:32
chr22	18032490	.	C	A	1056.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.178;ClippingRankSum=0.000;DP=69;ExcessHet=3.0103;FS=22.184;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=6.665;SOR=2.603;set=HC	GT:AD:AF:DP	0/1:39,30:0.43:69
chr22	18072333	rs34661208	A	ACTT	5967.73	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	18075566	rs150344720	CT	C	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;ClippingRankSum=0.000;DB;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.34;ReadPosRankSum=-0.684;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,21:0.72:29
chr22	18077386	rs35683311	CA	C	3162.73	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:5,157:0.97:162
chr22	18081136	rs2287228	G	A	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=0.934;set=HC	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	18081156	rs2072555	G	T	3322.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	18082669	rs5992075	A	G	431.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	18084001	rs5747254	T	G	2278.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	18084033	rs3747023	C	T	1762.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	18102012	rs4819615	C	G	416.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	18111431	rs7751	T	C	6246.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chr22	18111556	rs5746448	A	C	1023.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	18165898	.	C	CAAA	79	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=0.9998;HP=16;HapScore=3;MGOF=26;MMLQ=23;MQ=58.47;NF=1;NR=2;PP=79;QD=27.3333333333;SC=GACTCCGTCTCAAAAAAAAAA;SbPval=0.78;Source=Platypus;TC=5;TCF=2;TCR=3;TR=3;WE=18165907;WS=18165888;set=Platypus	GT:AD:AF:DP	1/1:2,3:0.60:5
chr22	18165995	rs2587070	T	G	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.96;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	18178859	rs2257083	C	T	2404.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	18189469	rs2587086	G	A	6262.77	.	AC=2;AF=1.00;AN=2;DB;DP=239;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chr22	18209718	rs2535688	C	T	4237.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	18218464	rs181382	T	C	1285.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	18218475	rs181383	C	G	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	18220831	rs11538	A	G	1911.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.832;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	18222089	rs372897	C	A	1234.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	18222263	rs181390	A	G	4655.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	18257138	rs443912	T	G	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.841;set=HC	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	18274092	rs451548	G	C	9572.77	.	AC=2;AF=1.00;AN=2;DB;DP=345;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr22	18291791	rs423710	C	G	6206.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr22	18293650	rs436590	A	G	2146.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	18310700	.	TAC	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.577;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=2.028;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=1.242;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:28,5:0.15:33
chr22	18324564	rs750559	C	T	3392.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	18347851	rs200555386	TTTTATTTA	T	779.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	18347916	rs9605418	A	G	472.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	18370066	rs4819472	C	A	4861.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	18463608	rs8140977	C	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	18463747	rs5992941	T	C	6525.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr22	18562888	rs464541	C	T	1022.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	18571008	rs464385	G	A	4508.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	18655860	rs4819484	G	A	9180.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr22	18775424	rs201973714	T	A	453.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=5.142;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.78;MQRankSum=0.084;QD=13.35;ReadPosRankSum=-0.851;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:17,17:0.50:34
chr22	18775482	rs201367283	A	G	187.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=39.94;MQRankSum=-0.674;QD=11.74;ReadPosRankSum=0.168;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,8:0.50:16
chr22	18896169	rs426065	C	T	4266.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	18896189	rs425576	T	C	5038.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	18897416	rs436638	C	T	440.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=1.371;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	18897459	.	C	T	255.77	.	AC=1;AF=0.500;AN=2;DP=28;set=Intersection	GT:AD:AF:DP	0/1:14,14:0.50:28
chr22	18898289	rs441862	G	C	4126.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	18898874	.	G	A	399	.	AC=1;AF=0.500;AN=2;BRF=0.24;FR=0.5000;HP=1;HapScore=2;MGOF=25;MMLQ=29;MQ=55.38;NF=3;NR=16;PP=399;QD=22.8300638183;SC=TGGGGGCAGAGGCTCAGATTC;SbPval=0.85;Source=Platypus;TC=37;TCF=9;TCR=28;TR=19;WE=18898882;WS=18898865;set=Platypus	GT:AD:AF:DP	1/0:18,19:0.51:37
chr22	18898908	.	A	G	105	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=26;MMLQ=29;MQ=54.84;NF=1;NR=7;PP=105;QD=17.4714015684;SC=TGGGGGCAGAAGCTCAGATTC;SbPval=0.97;Source=Platypus;TC=27;TCF=10;TCR=17;TR=8;WE=18898916;WS=18898898;set=Platypus	GT:AD:AF:DP	0/1:19,8:0.30:27
chr22	18899016	rs428224	G	A	958.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	18900669	rs383964	A	G	1877.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.75;QD=29.81;SOR=1.092;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	18900750	rs372055	G	A	2861.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.175;ClippingRankSum=0.000;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=26.02;ReadPosRankSum=0.980;SOR=0.316;set=HC	GT:AD:AF:DP	1/1:1,109:0.99:110
chr22	18901004	rs450046	C	T	6022.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;MQ=59.94;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr22	18901090	rs385440	A	G	2040.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	18904414	rs455072	A	G	2952.77	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	18904606	rs375115	T	G	1011.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	18905964	rs2904552	C	T	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	18906839	rs3970551	A	G	474.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	18907124	rs1076466	G	A	4490.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	18908875	rs1808320	A	G	1125.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.61;QD=25.59;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	18910257	rs2008912	C	T	2029.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	18910284	rs5844366	AC	A	4797.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	18910301	rs2008904	A	G	6560.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.39;QD=46.86;SOR=1.897;set=HC	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	18910307	rs2008903	G	A	6926.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=41.98;SOR=1.727;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	18910479	rs13058335	C	T	9704.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr22	18910756	rs2008878	C	G	2105.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	18912678	rs4819756	A	G	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	18923745	rs2008720	G	T	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.80;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	18923848	rs71299315	T	TCCCGC	53.70	.	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.65;QD=26.85;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	19163577	rs35359423	C	CAT	2199.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	19172006	rs1018764	T	C	6205.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr22	19184095	rs1061325	T	C	4577.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	19187375	rs9605957	G	A	2179.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	19187427	rs2236759	C	G	948.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	19189003	rs11386977	A	AC	5171.73	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	19197896	rs698423	T	C	3725.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.17;SOR=0.776;set=HC	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	19211665	rs9604935	C	T	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	19217613	rs2800963	C	T	754.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.93;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	19217617	rs113338080	C	T	724.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.30;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	19217621	rs9306213	G	T	691.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=4.047;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	19220648	rs807458	G	T	1104.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	19318622	rs1210690	T	C	466.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	19349590	rs916594	G	C	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	19371052	rs34292276	C	T	2648.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	19419093	rs8140291	A	G	2097.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	19455376	rs5746742	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chr22	19455836	rs756658	A	G	2074.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.61;SOR=0.718;set=HC	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	19455871	rs756657	A	C	1544.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	19458224	rs5993648	C	T	719.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	19462466	rs5746744	C	G	357.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	19467652	rs5748232	T	C	7527.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr22	19468655	rs5993650	C	T	2000.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	19470493	.	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.587;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=3.859;MLEAC=1;MLEAF=0.500;MQ=60.15;MQRankSum=2.001;QD=0.76;ReadPosRankSum=0.390;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chr22	19471609	rs737858	A	G	1152.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=1.230;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	19492692	rs8136840	C	G	287.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	19495967	rs2073736	G	A	1541.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	19504318	rs2073733	G	A	4074.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.17;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	19504470	rs2073732	T	C	11090.77	.	AC=2;AF=1.00;AN=2;DB;DP=412;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr22	19511925	rs885985	G	A	8921.77	.	AC=2;AF=1.00;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	1/1:0,325:1.00:325
chr22	19712094	rs1059196	C	T	405.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.36;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	19794366	rs737860	C	A	2855.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	19868218	rs1139793	A	G	7846.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,279:1.00:279
chr22	19882976	rs35695986	G	T	11139.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,412:1.00:412
chr22	19906281	rs5993866	C	T	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	19921003	rs5746847	T	C	5528.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,216:1.00:216
chr22	19950235	rs4633	C	T	11998.77	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chr22	19951271	rs4680	G	A	14105.77	.	AC=2;AF=1.00;AN=2;DB;DP=531;set=Intersection	GT:AD:AF:DP	1/1:0,531:1.00:531
chr22	19954916	rs113895332	A	AT	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.27;ReadPosRankSum=-1.319;SOR=0.687;set=HC	GT:AD:AF:DP	0/1:225,57:0.20:282
chr22	19956262	rs362204	G	GC	3565.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	19958669	rs165849	G	A	14706.77	.	AC=2;AF=1.00;AN=2;DB;DP=540;set=Intersection	GT:AD:AF:DP	1/1:0,540:1.00:540
chr22	19959366	rs165824	G	A	7187.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr22	19959473	rs165815	C	T	14068.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr22	19959955	rs2073744	A	G	14314.77	.	AC=2;AF=1.00;AN=2;DB;DP=505;set=Intersection	GT:AD:AF:DP	1/1:0,502:1.00:502
chr22	19960184	rs71313931	C	G	6581.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.68;SOR=2.032;set=HC	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	19960188	rs2518823	T	C	7053.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.10;SOR=1.942;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	19960198	rs71313932	G	C	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.73;SOR=1.558;set=HC	GT:AD:AF:DP	1/1:0,183:1.00:183
chr22	19964418	rs2240718	T	G	7594.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	19968971	rs2073748	G	A	4781.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	19969075	rs2073747	A	G	6988.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr22	19969106	rs2240717	A	G	8041.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	19974583	rs7284393	A	G	11883.77	.	AC=2;AF=1.00;AN=2;DB;DP=445;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,445:1.00:445
chr22	19974654	rs7292055	G	A	4733.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	19978022	rs4819527	C	T	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	20020889	rs9605051	T	C	7996.77	.	AC=2;AF=1.00;AN=2;DB;DP=315;set=Intersection	GT:AD:AF:DP	1/1:2,311:0.99:313
chr22	20104492	.	GGGCCTGTCACAAGGGAAGT	G	11007.73	.	AC=2;AF=1.00;AN=2;DP=381;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chr22	20109677	rs11705021	G	A	2083.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	20110246	rs55662364	C	CTGTGTGTG	499.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.13;QD=45.43;SOR=1.270;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	20136263	rs175181	G	A	4980.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.49;SOR=0.714;set=HC	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	20230098	rs374742465	G	A	3344.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	20255020	rs854929	T	C	8270.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chr22	20295420	rs4425183	G	T	1656.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.49;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	20303854	rs5993964	G	A	1188.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	20379008	rs62218641	G	A	170.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.50;QD=21.35;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	20379066	rs56006201	C	T	143.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.14;QD=23.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	20718525	rs2277833	T	C	5024.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.17;QD=32.21;SOR=3.568;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	20718692	rs1807536	G	A	11490.77	.	AC=2;AF=1.00;AN=2;DB;DP=410;set=Intersection	GT:AD:AF:DP	1/1:0,409:1.00:409
chr22	20721783	rs148842077	A	G	1362.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.21;QD=29.00;SOR=2.160;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	20749051	.	CT	C	2281.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.858;ClippingRankSum=0.000;DP=244;ExcessHet=3.0103;FS=0.984;MLEAC=1;MLEAF=0.500;MQ=60.75;MQRankSum=1.635;QD=12.47;ReadPosRankSum=-0.808;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:27,156:0.85:183
chr22	20755098	rs1990249	A	G	7023.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chr22	20755226	rs4581986	A	G	867.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	20759534	rs5761555	A	G	1594.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	20779604	rs7286419	T	G	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	20779768	rs874101	G	C	2302.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	20779946	rs759612	C	G	1690.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	20779946	.	CG	GC	544	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=1;HapScore=1;MGOF=32;MMLQ=23;MQ=60.0;NF=10;NR=16;PP=544;QD=22.9795336485;SC=TTGCCGCGCACGTCAGCGGCC;SbPval=0.61;Source=Platypus;TC=28;TCF=11;TCR=17;TR=26;WE=20779955;WS=20779936;set=Platypus	GT:AD:AF:DP	1/1:2,26:0.93:28
chr22	20779947	rs759611	G	C	1690.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.35;SOR=1.387;set=HC	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	20779973	rs5844418	C	CG	1201.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	20780024	rs5844420	G	GC	1987.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	20780029	rs370015834	G	GC	2098.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.62;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	20780031	rs2329378	G	C	2107.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=1.863;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	20780091	rs759610	C	G	5124.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.95;SOR=1.101;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	20780097	rs759609	G	C	5118.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.38;SOR=1.040;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	20786392	.	AG	A	1400.73	.	AC=2;AF=1.00;AN=2;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	20791821	rs9619753	G	A	2365.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	20811930	rs362087	C	A	588.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	20843885	rs165613	T	G	667.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	20862646	rs5750324	T	G	12065.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:1,463:1.00:464
chr22	20891545	rs4821915	A	G	1384.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	20907303	rs165829	T	C	1527.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	20929286	rs165842	C	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	20937601	rs165643	C	T	2133.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	20938775	rs165747	T	C	3371.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	20940794	rs93173	G	A	23697.77	.	AC=2;AF=1.00;AN=2;DB;DP=887;set=Intersection	GT:AD:AF:DP	1/1:0,885:1.00:885
chr22	21034809	rs28668558	G	A	1814.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	21045651	rs5760036	C	T	4440.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	21062268	rs13471	G	T	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	21064120	rs146546335	G	A	2047.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.42;QD=29.68;SOR=2.704;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	21064356	rs5760149	A	C	2566.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	21066930	rs2629351	T	C	258.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=25.88;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	21068850	rs5760167	T	G	7939.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr22	21073122	rs1807692	G	A	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.58;SOR=0.799;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	21080721	rs11462205	T	TG	4410.73	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:2,163:0.99:165
chr22	21081964	rs4820583	C	T	3187.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chr22	21087860	rs368649547	G	T	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	21088146	rs17819969	C	G	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	21106055	rs5751852	G	A	14717.77	.	AC=2;AF=1.00;AN=2;DB;DP=562;set=Intersection	GT:AD:AF:DP	1/1:0,561:1.00:561
chr22	21106141	rs73160984	T	C	5792.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	21107153	rs2329583	T	C	4335.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	21118918	rs165764	T	G	624.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	21119995	rs73161000	A	T	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	21141300	rs4675	T	C	14140.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr22	21147293	rs165793	A	G	1749.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	21150340	rs165924	T	C	1634.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	21150704	rs739523	C	G	798.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	21161564	rs5760728	G	C	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	21167605	rs362114	G	GACA	4641.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	21167787	rs165854	G	A	3002.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	21174312	rs165691	C	A	539.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	21178484	rs165733	C	G	1453.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	21188732	rs165729	C	A	2188.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	21188964	rs5760899	T	C	4795.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	21311531	rs81027	C	T	2712.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	21311721	rs178251	T	G	11767.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr22	21322351	rs178254	T	C	7397.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:1,289:1.00:290
chr22	21322376	rs74610147	TC	GG	9938.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.77;SOR=6.869;set=HC	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	21322380	rs71317868	A	G	9592.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.26;SOR=6.686;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	21322383	rs432390	A	G	9007.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.72;SOR=6.624;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	21327834	rs178265	C	G	3561.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.61;SOR=0.912;set=HC	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	21327864	rs187626049	G	A	2326.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.03;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	21329123	rs733455	A	G	1701.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	21331043	rs178269	A	T	8848.77	.	AC=2;AF=1.00;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr22	21331950	rs178276	C	G	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	21334873	rs13057408	G	C	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	21337415	rs178281	C	G	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	21340088	rs178287	T	C	7189.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr22	21343982	rs138025454	TGGGGAGCCAGGGCGCAGGTAGAGGAGGTGAGGGGCAC	T	6450.73	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	21344905	rs178290	A	G	1554.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	21346485	rs112544	T	C	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	21348084	rs178291	T	C	3750.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	21349037	rs178292	A	G	6883.77	.	AC=2;AF=1.00;AN=2;DB;DP=257;set=Intersection	GT:AD:AF:DP	1/1:0,257:1.00:257
chr22	21349579	rs178293	C	T	5644.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	21349676	rs412470	TC	AT	10549.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.89;SOR=0.743;set=HC	GT:AD:AF:DP	1/1:0,246:1.00:246
chr22	21350461	rs178294	A	G	1593.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	21350880	rs178295	T	C	5252.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	21372405	rs2073598	G	T	17650.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,670:1.00:670
chr22	21377958	rs929671	A	C	1270.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	21388605	rs2541956	T	C	1637.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	21409619	rs2241224	C	G	3704.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	21411598	rs46148	T	C	1082.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	21576361	rs200542750	T	C	361.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.72;QD=24.12;SOR=2.448;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	21724377	rs72613702	G	A	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.41;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	21724423	rs78616296	C	T	69.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.40;QD=23.09;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21797094	rs486362	C	G	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.38;QD=43.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	21797102	rs1210228	G	C	1293.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=34.38;QD=43.13;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	21800042	rs467181	T	C	18091.77	.	AC=2;AF=1.00;AN=2;DB;DP=688;set=Intersection	GT:AD:AF:DP	1/1:0,685:1.00:685
chr22	21800444	rs128477	T	C	9249.77	.	AC=2;AF=1.00;AN=2;DB;DP=348;set=Intersection	GT:AD:AF:DP	1/1:1,347:1.00:348
chr22	21822001	rs183213118	A	G	33.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=16.87;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	21822322	rs76311428	G	A	47.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.34;QD=15.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	21822362	rs192833477	C	A	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.95;QD=23.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	21822744	rs395295	G	C	1219.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	21822774	rs452545	T	G	299.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.57;QD=29.98;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	21846325	.	GGGGC	G	36.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.480;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.92;MQRankSum=-1.884;QD=4.08;ReadPosRankSum=0.732;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:6,3:0.33:9
chr22	21846328	.	GC	G	134.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.531;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=41.92;MQRankSum=1.884;QD=14.97;ReadPosRankSum=-0.497;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:3,6:0.67:9
chr22	21968716	rs3831682	CA	C	81.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.520;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.077;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:135,37:0.22:172
chr22	21988599	rs371513	G	A	18640.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;set=Intersection	GT:AD:AF:DP	1/1:0,669:1.00:669
chr22	22007143	rs395006	G	A	718.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	22007370	rs372150	T	C	10657.77	.	AC=2;AF=1.00;AN=2;DB;DP=403;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chr22	22024456	rs55762853	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.39;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	22024507	rs402225	G	A	1524.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	22036832	rs1669112	T	C	6778.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	22041839	rs36108489	C	CA	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=1.569;MLEAC=1;MLEAF=0.500;MQ=60.95;MQRankSum=1.583;QD=4.95;ReadPosRankSum=-1.378;SOR=0.412;set=HC	GT:AD:AF:DP	0/1:10,14:0.58:24
chr22	22042079	rs741617	G	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	22042918	rs2278118	C	T	2371.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	22048770	rs2070504	C	G	1747.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	22057997	rs147967901	C	CGG,CGGG	2315.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=39.93;SOR=4.849;set=HC	GT:AD:AF:DP	1/2:0,23,35:0.40,0.60:58
chr22	22058000	rs861814	C	G	2841.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	22058355	rs2236643	A	G	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=260;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr22	22221530	rs9610504	G	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	22287862	rs2027789	G	A	8560.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr22	22287964	rs2027790	T	C	8671.77	.	AC=2;AF=1.00;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	1/1:0,340:1.00:340
chr22	22288011	rs9607409	G	A	5143.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr22	22288309	rs94194	T	C	775.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	22288560	rs9610645	G	A	5287.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.653;ClippingRankSum=0.000;DB;DP=206;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=25.67;ReadPosRankSum=-0.972;SOR=0.733;set=HC	GT:AD:AF:DP	1/1:2,204:0.99:206
chr22	22310018	rs200834650	C	T	38.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=19.37;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	22312315	rs71316717	C	T	4186.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:189,203:0.52:392
chr22	22312350	rs2187583	GG	CC	1856.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=179;ExcessHet=3.0103;FS=2.798;JOINED;MLEAC=1;MLEAF=0.500;MQ=46.91;MQRankSum=-4.523;QD=10.37;ReadPosRankSum=0.667;SOR=0.933;set=HC	GT:AD:AF:DP	0/1:92,87:0.49:179
chr22	22312383	rs200219922	A	G	761.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.17;QD=30.47;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	22312476	rs867116	T	C	104.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.64;QD=20.98;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	22312790	rs4638895	C	G	1132.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	22313669	rs2266972	G	A	2789.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	22313829	rs239918	A	C	1283.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	22318538	rs9610728	C	T	6661.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,241:1.00:241
chr22	22318671	rs9610729	G	A	5311.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	22322138	rs9610750	G	A	4687.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	22322192	rs9607460	C	A	2274.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	22324542	rs139881270	A	AGTGAGG	2290.73	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	22329851	rs9610773	G	C	508.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	22330082	rs239927	T	C	3070.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	22330107	rs762474	T	G	2729.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:1,104:0.99:105
chr22	22516883	rs34221567	TC	T	23606.73	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,587:1.00:587
chr22	22516998	rs2073453	C	T	15751.77	.	AC=2;AF=1.00;AN=2;DB;DP=589;set=Intersection	GT:AD:AF:DP	1/1:0,589:1.00:589
chr22	22517026	rs738885	T	C	13961.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr22	22517205	rs737842	A	G	844.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	22550339	rs9623052	G	C	12611.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr22	22550450	rs2073447	C	G	10439.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;set=Intersection	GT:AD:AF:DP	1/1:0,391:1.00:391
chr22	22550510	rs2073448	T	G	12878.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:1,473:1.00:474
chr22	22550760	rs5757323	A	G	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	22556270	rs5995639	T	C	16665.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,631:1.00:631
chr22	22556368	rs9306341	C	T	10483.77	.	AC=2;AF=1.00;AN=2;DB;DP=387;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr22	22556662	rs2330029	A	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	22569448	rs5750741	T	A	17695.77	.	AC=2;AF=1.00;AN=2;DB;DP=671;set=Intersection	GT:AD:AF:DP	1/1:0,667:1.00:667
chr22	22569554	rs6001413	C	A	16242.77	.	AC=2;AF=1.00;AN=2;DB;DP=610;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chr22	22569640	rs6001415	T	G	8446.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	22577869	rs201277699	A	G	850.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.32;QD=25.78;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	22578408	rs9623095	C	T	37.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.64;QD=18.87;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	22578443	rs76789895	GG	CC	217.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;ClippingRankSum=-0.000;DB;DP=8;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=47.23;MQRankSum=-2.100;QD=27.22;ReadPosRankSum=-0.319;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:2,6:0.75:8
chr22	22698027	rs1894246	A	G	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr22	22712021	rs10674947	C	CCGGG	1581.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	22712028	rs56355304	A	G	1909.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	22712261	rs3753077	C	T	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	22712276	rs5757971	A	G	4431.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.93;QD=28.41;SOR=1.150;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	22712467	rs5757973	T	G	16404.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:2,598:1.00:600
chr22	22712742	rs3753078	A	G	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	22724135	rs11324703	GT	G	4086.73	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	22724394	rs7292000	T	C	5927.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	22735736	rs448848	A	G	9174.77	.	AC=2;AF=1.00;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:0,332:1.00:332
chr22	22781857	.	T	C	5584.77	.	AC=2;AF=1.00;AN=2;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	22781859	.	T	TGGG	5980.73	.	AC=2;AF=1.00;AN=2;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	22781861	.	C	T	6214.77	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.96;QD=46.73;SOR=4.031;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	22781863	.	T	A	6347.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=46.67;SOR=4.080;set=HC	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	22781864	.	GTC	G	6292.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	22782210	rs199904014	T	A	13247.77	.	AC=2;AF=1.00;AN=2;DB;DP=464;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chr22	22782258	rs111480336	C	T	9016.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:1,296:1.00:297
chr22	22782394	rs165704	A	G	15870.77	.	AC=2;AF=1.00;AN=2;DB;DP=598;set=Intersection	GT:AD:AF:DP	1/1:0,598:1.00:598
chr22	22842484	rs57235089	C	T	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	22868211	rs361558	G	A	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	22868493	rs361666	G	T	11514.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=0.862;set=HC	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	22868497	rs361762	G	C	11440.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.34;SOR=0.790;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr22	22868773	rs361737	G	A	10155.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=44.74;SOR=0.738;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	22868776	rs362173	G	A	10178.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.36;QD=44.84;SOR=0.756;set=HC	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	22869123	rs362003	T	C	14395.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:1,546:1.00:547
chr22	22869209	rs362124	C	G	22169.77	.	AC=2;AF=1.00;AN=2;DB;DP=510;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.64;SOR=0.881;set=HC	GT:AD:AF:DP	1/1:0,508:1.00:508
chr22	22869218	rs362132	T	C	21597.77	.	AC=2;AF=1.00;AN=2;DB;DP=492;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.08;SOR=0.938;set=HC	GT:AD:AF:DP	1/1:0,490:1.00:490
chr22	22869538	rs361611	A	G	7982.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.35;SOR=0.785;set=HC	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	22869545	rs361580	T	G	8512.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.27;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	22869548	rs362011	T	C	8562.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.91;SOR=0.789;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	22869649	rs361721	G	C	5978.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr22	22869742	rs361959	C	A	7882.77	.	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.28;SOR=1.167;set=HC	GT:AD:AF:DP	1/1:0,289:1.00:289
chr22	22930770	rs6002909	A	G	13852.77	.	AC=2;AF=1.00;AN=2;DB;DP=521;set=Intersection	GT:AD:AF:DP	1/1:0,520:1.00:520
chr22	22989256	rs2904923	A	G	9564.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr22	23010943	rs406876	G	A	13459.77	.	AC=2;AF=1.00;AN=2;DB;DP=490;set=Intersection	GT:AD:AF:DP	1/1:0,490:1.00:490
chr22	23029263	rs443102	T	C	21808.77	.	AC=2;AF=1.00;AN=2;DB;DP=810;set=Intersection	GT:AD:AF:DP	1/1:0,807:1.00:807
chr22	23029374	rs451369	G	A	23336.77	.	AC=2;AF=1.00;AN=2;DB;DP=876;set=Intersection	GT:AD:AF:DP	1/1:0,871:1.00:871
chr22	23029698	rs443756	T	C	15007.77	.	AC=2;AF=1.00;AN=2;DB;DP=577;set=Intersection	GT:AD:AF:DP	1/1:0,574:1.00:574
chr22	23029718	rs199561156	A	T	512.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;ClippingRankSum=0.000;DB;DP=618;ExcessHet=3.0103;FS=5.119;MLEAC=1;MLEAF=0.500;MQ=59.17;MQRankSum=-11.715;QD=0.84;ReadPosRankSum=-5.448;SOR=0.893;set=HC	GT:AD:AF:DP	0/1:523,91:0.15:614
chr22	23029846	rs200665672	T	C	1143.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:152,68:0.31:220
chr22	23029871	.	C	T	976.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.09;MQRankSum=-5.287;QD=7.51;ReadPosRankSum=-2.087;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:94,36:0.28:130
chr22	23029876	.	C	T	760.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.707;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=3.426;MLEAC=1;MLEAF=0.500;MQ=58.94;MQRankSum=-6.171;QD=6.73;ReadPosRankSum=-0.163;SOR=1.106;set=HC	GT:AD:AF:DP	0/1:88,25:0.22:113
chr22	23046741	rs5759380	A	C	3880.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	23046915	rs5759381	C	T	9705.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,365:1.00:365
chr22	23046940	rs5751527	T	C	8197.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,302:0.99:304
chr22	23046954	rs5759382	T	C	11072.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.94;SOR=0.742;set=HC	GT:AD:AF:DP	1/1:0,252:1.00:252
chr22	23046957	rs5751528	T	C	10981.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.38;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	23047069	rs5751529	C	A	9861.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chr22	23047104	rs5751530	G	A	12049.77	.	AC=2;AF=1.00;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	1/1:0,451:1.00:451
chr22	23047143	.	GCC	G	18676.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=442;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.33;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,412:1.00:412
chr22	23047144	.	C	T	2965	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=23;MMLQ=28;MQ=59.97;NF=104;NR=99;PP=2965;QD=20;SC=CCAGGCCAGGCCCCTGAGTTG;SbPval=0.51;Source=Platypus;TC=257;TCF=133;TCR=124;TR=203;WE=23047155;WS=23047134;set=Platypus	GT:AD:AF:DP	1/1:54,203:0.79:257
chr22	23047145	.	C	CTGATATA	2976	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=23;MMLQ=28;MQ=59.96;NF=44;NR=95;PP=2976;QD=20;SC=CAGGCCAGGCCCCTGAGTTGG;SbPval=0.51;Source=Platypus;TC=142;TCF=45;TCR=97;TR=139;WE=23047155;WS=23047134;set=Platypus	GT:AD:AF:DP	1/1:3,139:0.98:142
chr22	23047146	rs78292630	C	T	18913.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.36;SOR=0.737;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr22	23047146	.	CCT	C	2950	.	AC=2;AF=1.00;AN=2;BRF=0.41;FR=1.0000;HP=3;HapScore=1;MGOF=23;MMLQ=23;MQ=59.87;NF=40;NR=95;PP=2950;QD=20;SC=AGGCCAGGCCCCTGAGTTGGT;SbPval=0.6;Source=Platypus;TC=145;TCF=45;TCR=100;TR=135;WE=23047155;WS=23047134;set=Platypus	GT:AD:AF:DP	1/1:10,135:0.93:145
chr22	23047148	rs77364963	T	TGATATAC	19546.73	.	AC=2;AF=1.00;AN=2;DB;DP=419;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.87;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,417:1.00:417
chr22	23047290	rs9623875	G	A	9848.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	1/1:0,364:1.00:364
chr22	23054916	rs5759408	G	T	10090.77	.	AC=2;AF=1.00;AN=2;DB;DP=383;set=Intersection	GT:AD:AF:DP	1/1:0,381:1.00:381
chr22	23055329	.	CTTATTTATTTAT	C,CTTAT	2735.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;DP=80;set=Intersection	GT:AF:DP	1/2:0.14,0.86:64
chr22	23055339	rs199662081	T	C	2169.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.530;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=33.90;ReadPosRankSum=-0.551;SOR=0.929;set=HC	GT:AD:AF:DP	0/1:9,55:0.86:64
chr22	23055343	.	T	C	154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=0.877;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:65,9:0.12:74
chr22	23055421	rs1985790	G	A	11612.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr22	23055440	rs1008910	C	A	12150.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chr22	23055533	rs4446155	G	A	15801.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.83;QD=44.14;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,358:1.00:358
chr22	23055539	rs1985791	G	T	16203.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.84;QD=43.79;SOR=0.726;set=HC	GT:AD:AF:DP	1/1:0,370:1.00:370
chr22	23055752	rs2304533	C	T	2332.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	23063645	rs11090173	T	G	6424.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.184;set=HC	GT:AD:AF:DP	1/1:0,236:1.00:236
chr22	23077555	rs4822296	T	C	10268.77	.	AC=2;AF=1.00;AN=2;DB;DP=373;set=Intersection	GT:AD:AF:DP	1/1:0,373:1.00:373
chr22	23077690	rs4822297	C	T	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	23089740	rs62220366	C	T	5786.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,208:1.00:208
chr22	23089759	rs2040563	A	T	6951.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr22	23089826	rs1978004	G	A	13954.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr22	23089857	rs2040564	G	A	21332.77	.	AC=2;AF=1.00;AN=2;DB;DP=486;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=43.99;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,485:1.00:485
chr22	23089865	rs2040565	A	G	21140.77	.	AC=2;AF=1.00;AN=2;DB;DP=473;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.16;QD=44.79;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,472:1.00:472
chr22	23089941	rs3087123	ACT	A	14074.73	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:2,524:1.00:526
chr22	23090423	rs34605189	G	C	5418.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chr22	23090438	rs56223989	A	G	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	23090468	rs58198190	C	T	1878.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=41.65;QD=42.70;SOR=1.662;set=HC	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	23090475	rs58580735	T	C	1887.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.65;QD=44.95;SOR=1.556;set=HC	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	23101247	rs4822303	GC	AT	7390.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	23101280	rs1894244	C	T	10197.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	23101301	rs4822305	A	G	11113.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,273:1.00:273
chr22	23101347	rs1894245	G	A	7636.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chr22	23101559	rs4134484	G	T	6717.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr22	23114748	rs71917069	CT	C	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.341;ClippingRankSum=0.000;DB;DP=139;ExcessHet=3.0103;FS=0.935;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.47;ReadPosRankSum=0.347;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:90,42:0.32:132
chr22	23165839	rs5844528	G	GC	6541.73	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	23223070	rs378183	G	A	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	23405957	rs8139280	G	A	752.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	23478695	rs9612240	C	T	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	23479758	rs34504974	G	GT	1659.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	23480962	rs5759598	T	G	683.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	23481133	rs10568631	GA	G	2361.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.193;ClippingRankSum=0.000;DB;DP=271;ExcessHet=3.0103;FS=0.590;MLEAC=1;MLEAF=0.500;MQ=60.48;MQRankSum=2.138;QD=9.52;ReadPosRankSum=0.965;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:71,177:0.71:248
chr22	23482460	rs4822360	A	G	2239.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	23482718	rs4822361	C	T	687.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	23482744	rs4822362	C	A	451.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	23492236	rs9612248	C	T	6695.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	23494833	rs5759603	T	G	2268.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:1,80:0.99:81
chr22	23494904	rs2301555	T	G	816.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	23501286	rs2246716	T	G	5434.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	23502987	rs9612252	A	G	1312.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	23503008	rs9612253	T	C	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	23503170	rs5759612	A	G	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,289:1.00:289
chr22	23503205	rs5759613	G	C	6751.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	23503266	rs5759614	G	A	5579.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	23503319	rs5759615	A	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	23503533	rs5759617	G	T	1358.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	23503569	rs10775764	T	C	2703.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chr22	23503580	rs9608085	C	T	3174.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	23503651	rs713682	C	T	7936.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chr22	23503756	rs737818	G	A	5200.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	23503819	rs737819	T	C	1326.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	23504862	rs5759619	C	T	29711.77	.	AC=2;AF=1.00;AN=2;DB;DP=1136;set=Intersection	GT:AD:AF:DP	1/1:2,1124:1.00:1126
chr22	23504916	rs5759620	G	A	22745.77	.	AC=2;AF=1.00;AN=2;DB;DP=856;set=Intersection	GT:AD:AF:DP	1/1:1,852:1.00:853
chr22	23504959	rs5759621	C	T	13423.77	.	AC=2;AF=1.00;AN=2;DB;DP=555;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.68;SOR=1.183;set=HC	GT:AD:AF:DP	1/1:0,544:1.00:544
chr22	23505084	rs5751594	G	C	2398.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	23505101	rs5844548	C	CT	369.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.80;ReadPosRankSum=-0.013;SOR=0.516;set=HC	GT:AD:AF:DP	0/1:15,27:0.64:42
chr22	23523073	.	G	GC	704.73	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	23523082	rs199698427	G	GC	885.73	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	23540609	rs4822371	A	G	3897.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chr22	23585132	rs1004040	A	G	2903.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	23627441	rs131675	T	C	525.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	23735649	rs8135826	C	A	3596.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.136;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=3.252;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.30;ReadPosRankSum=-0.424;SOR=0.421;set=HC	GT:AD:AF:DP	1/1:1,147:0.99:148
chr22	24040692	rs45570945	C	T	3793.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	24106674	rs140181	G	A	15013.77	.	AC=2;AF=1.00;AN=2;DB;DP=550;set=Intersection	GT:AD:AF:DP	1/1:0,549:1.00:549
chr22	24108288	rs140182	C	G	7268.77	.	AC=2;AF=1.00;AN=2;DB;DP=282;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr22	24108412	rs80027270	G	A	2395.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.26;SOR=1.413;set=HC	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	24109550	rs131444	T	C	187.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	24109774	rs179468	T	G	1369.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.93;QD=25.37;SOR=1.835;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	24121378	rs738792	C	T	9924.77	.	AC=2;AF=1.00;AN=2;DB;DP=366;set=Intersection	GT:AD:AF:DP	1/1:2,364:0.99:366
chr22	24122499	rs9612427	G	A	1682.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	24125565	rs2877173	G	A	7228.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	24129553	rs55705149	GGC	G	2906.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.71;QD=35.02;SOR=4.407;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	24135968	rs11413092	C	CT,CTT	512.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.714;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=2.466;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=10.91;ReadPosRankSum=0.858;SOR=0.330;set=HC	GT:AD:AF:DP	1/2:11,21,15:0.45,0.32:47
chr22	24143502	rs738797	C	G	12693.77	.	AC=2;AF=1.00;AN=2;DB;DP=472;set=Intersection	GT:AD:AF:DP	1/1:0,469:1.00:469
chr22	24145395	rs5760030	A	G	4532.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	24145675	rs5751738	G	C	1812.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	24176959	rs35305666	CA	C	10324.73	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,282:1.00:282
chr22	24179724	rs2070462	G	C	828.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	24179821	.	G	A	3971.77	.	AC=2;AF=1.00;AN=2;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	24199260	rs60895711	TG	T	560.80	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=5.193;MLEAC=2;MLEAF=1.000;MQ=60.18;MQRankSum=0.543;QD=14.76;ReadPosRankSum=2.826;SOR=2.179;set=HC	GT:AD:AF:DP	1/1:7,31:0.82:38
chr22	24204158	rs2275979	A	G	412.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	24209759	rs2330626	G	C	507.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.18;SOR=0.784;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	24210050	rs4428104	A	C	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	24224655	rs9608213	G	A	3398.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.32;SOR=1.981;set=HC	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	24224659	rs9612499	C	A	3529.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.05;SOR=1.882;set=HC	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	24226242	rs2070460	A	G	7183.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	24237463	rs2070767	T	C	4239.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	24325006	rs200925305	G	A	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.68;QD=43.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	24325024	rs201723657	C	T	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.68;QD=43.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	24325047	rs149686121	C	G	781.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.68;QD=43.43;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	24340650	rs11343686	GT	G	1101.87	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.701;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=5.076;MLEAC=2;MLEAF=1.000;MQ=59.95;MQRankSum=-0.366;QD=13.60;ReadPosRankSum=1.806;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:11,70:0.86:81
chr22	24340938	rs140290	A	G	3636.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;set=Intersection	GT:AD:AF:DP	1/1:0,134:1.00:134
chr22	24345691	rs140302	A	C	1769.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	24376322	rs4630	G	A	2758.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	24377034	rs140308	A	G	1778.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	24383954	rs140313	C	T	14536.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,537:1.00:537
chr22	24452885	rs2070467	A	G	2345.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	24459438	rs762273	T	C	11700.77	.	AC=2;AF=1.00;AN=2;DB;DP=438;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr22	24472270	rs2283807	A	G	3956.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	24480503	rs4820581	G	A	6924.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.713;set=HC	GT:AD:AF:DP	1/1:0,258:1.00:258
chr22	24487739	rs117908385	G	A	29835.77	.	AC=2;AF=1.00;AN=2;DB;DP=1126;set=Intersection	GT:AD:AF:DP	1/1:0,1123:1.00:1123
chr22	24492061	rs2236622	T	C	2237.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	24578987	.	T	C	330.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.782;ClippingRankSum=0.000;DP=55;ExcessHet=3.0103;FS=5.751;MLEAC=1;MLEAF=0.500;MQ=57.31;MQRankSum=-7.280;QD=6.01;ReadPosRankSum=-1.541;SOR=1.739;set=HC	GT:AD:AF:DP	0/1:44,11:0.20:55
chr22	24578995	rs62231980	G	A	551.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.654;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=8.962;MLEAC=1;MLEAF=0.500;MQ=57.19;MQRankSum=-5.686;QD=7.36;ReadPosRankSum=-2.966;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:54,21:0.28:75
chr22	24579049	rs62231981	G	A	1707.77	.	AC=1;AF=0.500;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	0/1:142,92:0.39:234
chr22	24579157	rs200945728	GA	TC	4476.77	.	AC=1;AF=0.500;AN=2;DB;DP=341;JOINED;set=Intersection	GT:AD:AF:DP	0/1:216,125:0.37:341
chr22	24579219	rs399140	G	A	163.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=14.846;MLEAC=1;MLEAF=0.500;MQ=51.88;MQRankSum=-6.403;QD=1.27;ReadPosRankSum=-2.754;SOR=2.565;set=HC	GT:AD:AF:DP	0/1:110,19:0.15:129
chr22	24717850	rs204710	A	G	7171.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	24761467	rs204718	G	A	6211.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	24837301	rs5751876	T	C	5589.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,207:1.00:207
chr22	24891292	rs2070474	C	G	2314.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	24898310	rs2232866	C	T	17357.77	.	AC=2;AF=1.00;AN=2;DB;DP=643;set=Intersection	GT:AD:AF:DP	1/1:0,642:1.00:642
chr22	24936970	rs9704	A	G	16237.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr22	24938908	rs8139822	A	G	2701.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	24944053	rs4822506	C	T	4660.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	24944782	rs1003580	A	G	5746.77	.	AC=2;AF=1.00;AN=2;DB;DP=220;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr22	24953479	rs11427005	C	CT	719.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-0.052;SOR=1.112;set=HC	GT:AD:AF:DP	0/1:10,44:0.81:54
chr22	24953571	rs5760472	A	G	7312.77	.	AC=2;AF=1.00;AN=2;DB;DP=287;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chr22	24964128	rs4597	T	C	4150.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.744;set=HC	GT:AD:AF:DP	1/1:0,158:1.00:158
chr22	24967832	rs41277313	G	C	5041.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	25003934	rs2076999	G	A	1333.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.75;QD=26.68;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	25115959	rs5760605	C	T	2446.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	25124095	rs738827	C	T	4257.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	25144912	rs11703684	C	T	16710.77	.	AC=2;AF=1.00;AN=2;DB;DP=642;set=Intersection	GT:AD:AF:DP	1/1:0,641:1.00:641
chr22	25145453	rs1892723	C	T	4397.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	25145471	rs1892722	A	G	3387.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	25147324	rs11705460	A	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.70;SOR=1.501;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	25150694	rs8142601	C	T	1973.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	25151890	rs143403523	CA	C	2003.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.110;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.09;MQRankSum=0.232;QD=19.64;ReadPosRankSum=-0.228;SOR=0.497;set=HC	GT:AD:AF:DP	1/1:3,99:0.97:102
chr22	25282765	rs139719	T	C	2366.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	25601076	rs150956294	G	T	3681.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:1,131:0.99:132
chr22	25617554	rs56191632	G	C	5284.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	25624049	rs5760923	G	A	4810.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	25625554	rs55700037	G	A	5958.77	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	25627604	rs8140949	G	A	8473.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr22	25713933	rs133156	A	G	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	25714218	rs2072869	A	T	14212.77	.	AC=2;AF=1.00;AN=2;DB;DP=517;set=Intersection	GT:AD:AF:DP	1/1:0,516:1.00:516
chr22	25716068	rs133162	C	G	4189.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.86;SOR=1.223;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	25750814	rs141812512	C	CAGGGCA	6464.73	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	25753231	rs133194	G	A	4412.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chr22	26166011	rs133903	C	A	955.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.209;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	26166900	rs3859866	G	C	7258.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,256:1.00:256
chr22	26173661	rs5761170	T	C	3204.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.725;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	26177593	rs28729695	G	A	1315.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:1,37:0.97:38
chr22	26181594	rs13053299	T	C	870.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	26193824	rs2877299	C	T	2704.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	26193982	rs738642	C	G	5769.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	26194045	rs738643	T	C	4184.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	26194093	rs738644	G	A	1840.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	26219412	rs5752226	T	C	2236.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	26222505	rs2331162	G	A	2683.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	26228797	rs3859879	A	G	6879.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	26247456	rs5996988	G	A	7595.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.37;SOR=0.905;set=HC	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	26247607	rs6004798	C	T	3794.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	26273834	rs4822666	A	C	7567.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.05;SOR=0.987;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	26273834	.	ACG	CCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.15;FR=1.0000;HP=1;HapScore=1;MGOF=13;MMLQ=21;MQ=59.91;NF=92;NR=62;PP=2947;QD=20;SC=ATTCCTCCTAACGGAAACTTT;SbPval=0.58;Source=Platypus;TC=158;TCF=93;TCR=65;TR=154;WE=26273858;WS=26273824;set=Platypus	GT:AD:AF:DP	1/1:4,154:0.97:158
chr22	26273836	rs4822667	G	T	7567.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.52;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	26273850	rs695428	G	C	4957.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:1,187:0.99:188
chr22	26273893	rs4822668	G	C	5325.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.764;set=HC	GT:AD:AF:DP	1/1:0,203:1.00:203
chr22	26294124	rs2072004	T	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	26294513	rs2066935	A	G	501.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	26298754	rs2072016	G	A	2536.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	26298874	rs2072017	T	C	603.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	26298891	rs5761306	T	G	511.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	26304379	rs200325801	C	T	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	26317155	rs739284	A	G	5135.77	.	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.45;SOR=1.568;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	26317160	rs739285	G	A	5267.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.83;SOR=1.534;set=HC	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	26342056	rs4820662	C	T	1560.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.38;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	26343805	rs2072007	A	G	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	26346311	rs10600754	AT	A	515.74	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.440;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.31;MQRankSum=0.415;QD=15.17;ReadPosRankSum=0.517;SOR=0.598;set=HC	GT:AD:AF:DP	1/1:3,31:0.91:34
chr22	26346484	.	A	ATGTGTGTGTATGTGTGTG,ATGTGTGTGTATGTGTG	1343.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=42;set=Intersection	GT:AF:DP	1/1:1.00:34
chr22	26388304	rs12166988	G	A	9534.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr22	26399432	rs7287184	C	A	1661.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	26689201	rs653361	A	T	2892.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	26690407	rs137204	T	C	3832.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	26695077	rs663048	G	T	3996.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	26702015	rs1210894	A	C	5142.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.21;SOR=0.991;set=HC	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	26706500	rs35444510	C	CA	1826.73	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:9,94:0.91:103
chr22	26706826	rs666999	T	C	6191.77	.	AC=2;AF=1.00;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	1/1:0,211:1.00:211
chr22	26769234	rs1076660	T	G	742.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	26769308	rs669184	C	T	2622.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	26777795	rs482902	A	T	951.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	26777951	rs601548	T	G	7875.77	.	AC=2;AF=1.00;AN=2;DB;DP=298;set=Intersection	GT:AD:AF:DP	1/1:0,297:1.00:297
chr22	26778076	rs143254900	GA	G	5022.73	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chr22	26830478	rs3788398	A	G	5762.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chr22	26853905	rs1894704	C	A	3066.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	26853980	rs1894705	T	C	735.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	26854441	rs1894706	G	A	6196.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.82;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	26854682	rs4822722	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	26859942	rs5752330	C	T	5377.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	26861545	rs3213583	A	G	2503.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	26862153	rs739289	C	A	7432.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:1,275:1.00:276
chr22	26862212	rs713998	T	C	3944.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	26864658	rs739290	A	G	9776.77	.	AC=2;AF=1.00;AN=2;DB;DP=380;set=Intersection	GT:AD:AF:DP	1/1:0,378:1.00:378
chr22	26875370	rs9613187	C	T	4627.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	26877539	rs739291	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	26879823	rs968425	C	A	383.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.99;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	26879946	rs66831137	GGAGGCGGCGCCCCGGGGGAGA	G	470.73	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	26882142	rs5761561	G	A	1763.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	26884039	rs4820682	G	A	4676.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	26886953	rs34878449	GT	G	2530.73	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:6,128:0.96:134
chr22	26887099	rs4820683	T	A	6438.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;set=Intersection	GT:AD:AF:DP	1/1:0,243:1.00:243
chr22	26887829	rs1045523	A	G	621.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	26894985	rs2187956	C	T	5168.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	26895061	rs2157586	G	A	4931.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	26895337	rs1008530	G	A	13710.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:0,510:1.00:510
chr22	26899474	rs134136	T	C	861.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	26932150	rs3752523	G	A	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	26936897	rs12169509	G	A	7471.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,274:1.00:274
chr22	26937321	rs17851532	G	A	13982.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.417;set=HC	GT:AD:AF:DP	1/1:0,308:1.00:308
chr22	26937327	rs4822735	C	G	14315.77	.	AC=2;AF=1.00;AN=2;DB;DP=329;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.65;SOR=1.363;set=HC	GT:AD:AF:DP	1/1:0,328:1.00:328
chr22	26951317	rs28402932	A	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	27004089	rs5761626	A	C	5234.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chr22	27021425	rs4276	A	G	5685.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	27021457	rs5761637	T	C	7679.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chr22	27445883	rs9613355	C	T	1748.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	28316591	rs75321888	T	TG	2181.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chr22	29130300	rs1033667	C	T	1488.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	29130813	rs201340887	G	GA	844.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.135;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=7.437;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.85;ReadPosRankSum=0.653;SOR=2.551;set=HC	GT:AD:AF:DP	1/1:9,52:0.85:61
chr22	29137944	rs2236142	G	C	2782.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	29279823	.	CC	GG	837.77	.	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.89;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	29279846	.	TGCC	T	82.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994;ClippingRankSum=0.000;DP=51;ExcessHet=3.0103;FS=4.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.65;ReadPosRankSum=-0.234;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:44,6:0.12:50
chr22	29469130	rs7292708	A	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	29490497	rs134657	G	A	294.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	29495079	rs134665	G	A	1420.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	29562853	rs132316	T	C	2468.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	29562893	rs132317	G	C	4513.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	29659715	rs2231396	G	A	3518.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	29664423	rs2301291	G	A	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	29682881	.	CT	C	128.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.290;ClippingRankSum=0.000;DP=168;ExcessHet=3.0103;FS=0.777;MLEAC=1;MLEAF=0.500;MQ=60.13;MQRankSum=2.618;QD=0.81;ReadPosRankSum=1.167;SOR=0.815;set=HC	GT:AD:AF:DP	0/1:126,32:0.20:158
chr22	29692488	rs140065	G	T	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.41;SOR=2.546;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	29692497	rs131190	G	T	961.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.72;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	29707639	rs34777709	G	GC	5554.73	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	29711251	rs2519485	T	C	2699.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	29725893	rs2071578	T	C	2676.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	29727866	rs174765	C	T	6896.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.53;SOR=1.311;set=HC	GT:AD:AF:DP	1/1:0,260:1.00:260
chr22	29727886	rs2857465	T	C	4839.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.57;SOR=1.622;set=HC	GT:AD:AF:DP	1/1:0,197:1.00:197
chr22	29734797	rs6006098	G	A	430.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	29737823	rs2301587	T	C	3055.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	29746253	rs737883	T	C	1097.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	29755888	rs2072051	T	C	6675.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	29759188	rs6006105	C	G	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.14;QD=32.31;SOR=2.649;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	29819081	rs459310	G	A	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.93;QD=32.17;SOR=2.170;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	29833639	rs174718	C	G	1866.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=25.93;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	29879265	rs144426244	C	CA	271.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;ClippingRankSum=0.000;DB;DP=225;ExcessHet=3.0103;FS=1.467;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=2.282;QD=1.33;ReadPosRankSum=1.758;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:159,46:0.22:205
chr22	29881884	rs4823040	G	A	3233.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	29885567	rs147489453	A	AAAGTCCCCTGAGAAGGCC	29701.73	.	AC=2;AF=1.00;AN=2;DB;DP=794;set=Intersection	GT:AD:AF:DP	1/1:0,625:1.00:625
chr22	29885861	rs165923	T	C	28001.77	.	AC=2;AF=1.00;AN=2;DB;DP=1057;set=Intersection	GT:AD:AF:DP	1/1:0,1052:1.00:1052
chr22	29886413	rs165625	A	G	2867.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	29886893	rs1061373	G	T	1280.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	29908154	rs2007668	G	T	3138.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	29912885	rs12161054	G	A	1617.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	29913272	rs737976	C	T	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	1/1:0,276:1.00:276
chr22	29915144	rs2072301	C	T	2549.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	29938752	.	C	CA	303.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.718;ClippingRankSum=0.000;DP=203;ExcessHet=3.0103;FS=0.694;MLEAC=1;MLEAF=0.500;MQ=60.05;MQRankSum=0.000;QD=1.57;ReadPosRankSum=0.072;SOR=0.798;set=HC	GT:AD:AF:DP	0/1:150,44:0.23:194
chr22	29957321	rs6361	G	A	3272.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,117:1.00:117
chr22	29957911	rs469295	T	C	1883.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	29957944	rs468986	C	T	1253.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	29960335	rs456300	A	G	11826.77	.	AC=2;AF=1.00;AN=2;DB;DP=460;set=Intersection	GT:AD:AF:DP	1/1:0,456:1.00:456
chr22	29965168	rs467669	G	C	4664.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	29966083	rs456285	C	T	3712.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	29966317	rs457930	C	G	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	30077361	rs140086	G	A	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	30124968	rs9614042	C	T	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	30134523	rs146621560	T	TG	6162.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	30223746	.	G	GACACACAC	1715.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.452;ClippingRankSum=0.000;DP=97;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=0.000;QD=36.50;ReadPosRankSum=0.416;SOR=0.582;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chr22	30223799	.	GAC	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=7.869;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=-2.358;SOR=0.045;set=HC	GT:AD:AF:DP	0/1:27,5:0.16:32
chr22	30229399	rs3958025	C	G	1383.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	30366924	rs34749290	C	CT	1259.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.293;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.338;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=19.38;ReadPosRankSum=0.970;SOR=2.235;set=HC	GT:AD:AF:DP	1/1:3,62:0.95:65
chr22	30367014	rs16988135	A	T	2850.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	30394623	rs5763689	T	C	643.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	30394731	rs151302635	G	GT	3248.73	.	AC=2;AF=1.00;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	30403996	rs2074204	C	T	1649.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	30405151	rs41157	T	C	5517.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	30418161	rs41168	A	C	2716.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	30681797	rs6147585	T	TCTGCCCCAGCCCTTGGTGCTCCCC	11134.73	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr22	30685495	rs1860216	G	A	4317.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	30685560	rs1860217	G	C	1281.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	30691631	rs2097919	G	A	13871.77	.	AC=2;AF=1.00;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	1/1:0,514:1.00:514
chr22	30691684	.	C	A	1926.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.209;ClippingRankSum=0.000;DP=729;ExcessHet=3.0103;FS=1.387;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=0.975;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:575,151:0.21:726
chr22	30714684	rs740219	A	C	14348.77	.	AC=2;AF=1.00;AN=2;DB;DP=547;set=Intersection	GT:AD:AF:DP	1/1:1,543:1.00:544
chr22	30736147	rs2074732	G	A	1418.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	30738161	rs9608885	C	T	7004.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chr22	30738737	rs5753080	G	A	5617.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	30742623	rs740221	T	G	1380.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	30752696	rs5994293	G	T	3504.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=0.755;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	30770603	rs5749082	T	A	15384.77	.	AC=2;AF=1.00;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	1/1:0,576:1.00:576
chr22	30771554	rs2015035	T	G	23558.77	.	AC=2;AF=1.00;AN=2;DB;DP=908;set=Intersection	GT:AD:AF:DP	1/1:0,902:1.00:902
chr22	30772228	.	CT	C	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.695;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.142;SOR=0.771;set=HC	GT:AD:AF:DP	0/1:113,38:0.25:151
chr22	30772686	rs2286442	C	T	9404.77	.	AC=2;AF=1.00;AN=2;DB;DP=354;set=Intersection	GT:AD:AF:DP	1/1:0,352:1.00:352
chr22	30774340	rs9619104	A	G	2831.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	30776419	rs757870	T	C	3026.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	30781774	rs76749047	CA	C	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=1.886;MLEAC=1;MLEAF=0.500;MQ=60.20;MQRankSum=1.469;QD=0.89;ReadPosRankSum=0.761;SOR=1.098;set=HC	GT:AD:AF:DP	0/1:33,13:0.28:46
chr22	30782089	rs5997629	A	G	2303.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	30793137	rs757660	G	A	11357.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:1,435:1.00:436
chr22	30793270	rs887098	G	A	2833.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	30795484	rs5753124	G	C	946.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	30802444	rs2072157	C	T	2610.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	30812549	rs5997642	C	G	2902.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	30822920	rs5844906	T	TG	8756.73	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr22	30823065	rs2072159	G	A	2161.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	30823196	rs5753130	T	C	10370.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chr22	30857373	rs2240345	A	C	12520.77	.	AC=2;AF=1.00;AN=2;DB;DP=461;set=Intersection	GT:AD:AF:DP	1/1:0,460:1.00:460
chr22	30857448	rs5749104	A	G	12028.77	.	AC=2;AF=1.00;AN=2;DB;DP=466;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chr22	30862146	rs1047917	C	A	1529.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	30862400	rs1057995	T	A	5197.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	30863163	rs5997653	C	T	2442.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	30863234	rs151165173	A	ACATCCATCCATC	947.73	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	30864437	rs138903951	A	AT	2530.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;MQ=60.15;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	30864692	rs4820854	G	A	18548.77	.	AC=2;AF=1.00;AN=2;DB;DP=699;set=Intersection	GT:AD:AF:DP	1/1:0,698:1.00:698
chr22	30864817	rs2269963	A	G	4207.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	30866336	rs141634533	G	A	435.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	30867139	rs5997658	GC	TT	2086.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	30886388	rs73392179	C	G	1611.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	30927975	rs5749118	C	T	11090.77	.	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.47;SOR=0.863;set=HC	GT:AD:AF:DP	1/1:0,419:1.00:419
chr22	30973146	rs34323294	AG	A	6266.73	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	30981508	rs4820017	A	G	1675.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	30987861	rs737953	G	C	23625.77	.	AC=2;AF=1.00;AN=2;DB;DP=886;set=Intersection	GT:AD:AF:DP	1/1:0,882:1.00:882
chr22	30987933	rs17526668	T	A	17139.77	.	AC=2;AF=1.00;AN=2;DB;DP=648;set=Intersection	GT:AD:AF:DP	1/1:0,645:1.00:645
chr22	30987960	rs16988803	C	T	13142.77	.	AC=2;AF=1.00;AN=2;DB;DP=484;set=Intersection	GT:AD:AF:DP	1/1:0,482:1.00:482
chr22	31006860	rs9606756	A	G	4038.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	31011557	rs2267163	T	C	16701.77	.	AC=2;AF=1.00;AN=2;DB;DP=602;set=Intersection	GT:AD:AF:DP	1/1:0,597:1.00:597
chr22	31011610	rs1801198	G	C	16735.77	.	AC=2;AF=1.00;AN=2;DB;DP=615;set=Intersection	GT:AD:AF:DP	1/1:0,613:1.00:613
chr22	31011882	rs4820021	A	T	2214.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	31013419	rs9621049	C	T	8903.77	.	AC=2;AF=1.00;AN=2;DB;DP=333;set=Intersection	GT:AD:AF:DP	1/1:1,332:1.00:333
chr22	31018777	rs2301956	G	A	977.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	31022272	rs2072194	G	A	980.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	31022301	rs12168392	G	A	1707.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	31022590	rs12169610	C	T	1179.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	31032920	rs5997714	A	G	34327.77	.	AC=2;AF=1.00;AN=2;DB;DP=1279;set=Intersection	GT:AD:AF:DP	1/1:2,1275:1.00:1277
chr22	31060029	rs1005887	G	C	2524.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	31089958	rs11383654	G	GA	656.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.648;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=5.308;MLEAC=1;MLEAF=0.500;MQ=60.51;MQRankSum=1.838;QD=8.53;ReadPosRankSum=-0.592;SOR=1.420;set=HC	GT:AD:AF:DP	0/1:31,46:0.60:77
chr22	31266546	rs2301816	T	C	9153.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr22	31266777	rs4820909	T	C	746.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	31301734	rs10625967	A	AGG	6622.73	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:2,224:0.99:226
chr22	31342594	rs5753403	C	T	1157.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	31497054	rs5753459	A	C	4343.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chr22	31500536	rs10304	G	A	3588.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	31501833	rs2283875	C	T	2313.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	31503569	.	G	GCCCCGCCCCCGC	1090.73	.	AC=2;AF=1.00;AN=2;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	31521404	rs2240432	G	A	20035.77	.	AC=2;AF=1.00;AN=2;DB;DP=744;set=Intersection	GT:AD:AF:DP	1/1:0,742:1.00:742
chr22	31521850	rs2240431	A	C	30370.77	.	AC=2;AF=1.00;AN=2;DB;DP=1124;set=Intersection	GT:AD:AF:DP	1/1:0,1122:1.00:1122
chr22	31532568	rs757872	G	C	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,130:1.00:130
chr22	31533796	rs2072193	G	C	3435.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,128:1.00:128
chr22	31533967	rs2074739	G	A	2824.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	31535872	rs2074735	G	C	9761.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,369:1.00:369
chr22	31536133	rs2232176	A	C	8016.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chr22	31669267	rs2040532	A	G	1189.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	31687142	rs5753544	G	C	10159.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr22	31687313	rs4820044	A	G	5859.77	.	AC=2;AF=1.00;AN=2;DB;DP=221;set=Intersection	GT:AD:AF:DP	1/1:0,220:1.00:220
chr22	31687455	rs71319175	AC	A	332.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	31741067	rs714909	G	A	10740.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;set=Intersection	GT:AD:AF:DP	1/1:0,392:1.00:392
chr22	31795866	rs4820047	T	C	2394.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	31843567	rs2273251	G	C	1898.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	31844293	rs738658	A	C	8314.77	.	AC=2;AF=1.00;AN=2;DB;DP=313;set=Intersection	GT:AD:AF:DP	1/1:0,313:1.00:313
chr22	31851381	rs67838369	CT	C	239.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=2.403;MLEAC=1;MLEAF=0.500;MQ=60.26;MQRankSum=0.596;QD=8.27;ReadPosRankSum=0.216;SOR=1.911;set=HC	GT:AD:AF:DP	0/1:6,23:0.79:29
chr22	31854434	rs11293411	AT	A	4418.73	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	31859637	.	TA	T	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;ClippingRankSum=0.000;DP=83;ExcessHet=3.0103;FS=4.256;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.00;ReadPosRankSum=0.731;SOR=1.467;set=HC	GT:AD:AF:DP	0/1:55,24:0.30:79
chr22	31904170	rs2413054	A	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	31904262	rs146128116	CTT	C	2912.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	31926725	rs3818134	C	T	1233.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	31942770	rs1968023	G	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.853;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	31971071	rs71982561	CGTGTGT	C,CGT	1682.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.66;QD=39.13;SOR=1.609;set=HC	GT:AD:AF:DP	1/2:0,14,29:0.33,0.67:43
chr22	31971172	rs10657905	A	ATCT	5722.73	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	31971258	rs5753700	T	C	6303.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	31983287	rs112798271	A	ATTTGTTTTGT	10067.73	.	AC=2;AF=1.00;AN=2;DB;DP=323;set=Intersection	GT:AD:AF:DP	1/1:0,226:1.00:226
chr22	32081436	.	C	CA	272.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=2.146;MLEAC=1;MLEAF=0.500;MQ=60.47;MQRankSum=1.575;QD=2.55;ReadPosRankSum=0.866;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:73,34:0.32:107
chr22	32081665	.	G	A	4311.77	.	AC=1;AF=0.500;AN=2;DP=265;set=Intersection	GT:AD:AF:DP	0/1:80,185:0.70:265
chr22	32179850	rs138286	G	C	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	32211412	rs5749334	A	C	597.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32239898	.	C	CT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=3.588;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.99;ReadPosRankSum=0.549;SOR=1.514;set=HC	GT:AD:AF:DP	0/1:32,9:0.22:41
chr22	32333783	rs3788441	G	C	1539.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	32334021	rs1984388	T	A	11746.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr22	32334203	rs3788442	C	T	4879.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:1,185:0.99:186
chr22	32334229	rs3788443	A	C	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:2,133:0.99:135
chr22	32334295	rs3788444	C	G	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	32435409	rs130262	G	C	922.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.63;SOR=0.927;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	32463875	rs135110	G	A	1237.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	32478972	rs131880	A	AG	7333.73	.	AC=2;AF=1.00;AN=2;DB;DP=205;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	32482127	.	C	CA	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;ClippingRankSum=0.000;DP=184;ExcessHet=3.0103;FS=1.673;MLEAC=1;MLEAF=0.500;MQ=59.93;MQRankSum=1.934;QD=0.72;ReadPosRankSum=-0.063;SOR=0.927;set=HC	GT:AD:AF:DP	0/1:140,31:0.18:171
chr22	32495092	.	A	AATAT	221.80	.	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=65.90;QD=36.97;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	32545849	rs58570639	C	CA	3742.73	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	32554985	rs5998267	A	G	5582.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,219:1.00:219
chr22	32579550	rs136428	T	C	13602.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.46;SOR=0.712;set=HC	GT:AD:AF:DP	1/1:0,313:1.00:313
chr22	32579559	rs136429	A	G	13538.77	.	AC=2;AF=1.00;AN=2;DB;DP=309;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.24;SOR=0.706;set=HC	GT:AD:AF:DP	1/1:0,306:1.00:306
chr22	32579676	rs136430	A	G	3951.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:2,146:0.99:148
chr22	32579751	rs136431	C	G	1392.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chr22	32586632	rs136466	C	T	998.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	32586854	rs136467	C	T	3942.77	.	AC=2;AF=1.00;AN=2;DB;DP=131;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chr22	32586875	rs136468	G	A	5213.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=44.56;QD=44.18;SOR=1.278;set=HC	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	32586878	rs136469	A	G	3516.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.084;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=43.52;MQRankSum=-2.373;QD=30.32;ReadPosRankSum=1.088;SOR=1.250;set=HC	GT:AD:AF:DP	1/1:2,114:0.98:116
chr22	32586926	rs136470	T	C	3514.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.93;QD=31.95;SOR=0.931;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	32587023	rs55974778	C	G	19391.77	.	AC=2;AF=1.00;AN=2;DB;DP=428;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.05;QD=45.31;SOR=1.392;set=HC	GT:AD:AF:DP	1/1:0,428:1.00:428
chr22	32587027	rs136472	G	C	19572.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.52;QD=44.08;SOR=1.291;set=HC	GT:AD:AF:DP	1/1:0,444:1.00:444
chr22	32587478	rs136473	T	C	1608.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	32589034	rs136479	T	C	17239.77	.	AC=2;AF=1.00;AN=2;DB;DP=633;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr22	32590449	rs108211	G	A	2415.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.55;SOR=1.191;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	32616870	rs73164039	G	A	2885.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	32617062	rs5998317	G	A	7021.77	.	AC=2;AF=1.00;AN=2;DB;DP=268;set=Intersection	GT:AD:AF:DP	1/1:0,268:1.00:268
chr22	32617121	rs73164040	G	A	2579.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	32621619	rs2294208	C	T	6688.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:2,278:0.99:280
chr22	32625210	rs5998322	C	T	9866.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr22	32626908	rs2068209	G	A	1766.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	32633505	rs5998328	G	T	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32634877	rs5998331	G	A	4719.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	32754386	rs9621427	C	A	13999.77	.	AC=2;AF=1.00;AN=2;DB;DP=519;set=Intersection	GT:AD:AF:DP	1/1:0,515:1.00:515
chr22	32756652	rs201161881	A	G	1918.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.887;ClippingRankSum=0.000;DB;DP=424;ExcessHet=3.0103;FS=6.701;MLEAC=1;MLEAF=0.500;MQ=55.95;MQRankSum=-18.913;QD=4.54;ReadPosRankSum=-1.864;SOR=0.689;set=HC	GT:AD:AF:DP	0/1:297,126:0.30:423
chr22	32756684	rs61729165	C	A	2619.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.063;ClippingRankSum=0.000;DB;DP=445;ExcessHet=3.0103;FS=1.155;MLEAC=1;MLEAF=0.500;MQ=55.44;MQRankSum=-19.725;QD=5.89;ReadPosRankSum=3.694;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:285,160:0.36:445
chr22	32756703	rs73166367	C	T	2821.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.127;ClippingRankSum=0.000;DB;DP=479;ExcessHet=3.0103;FS=0.536;MLEAC=1;MLEAF=0.500;MQ=55.78;MQRankSum=-20.287;QD=5.89;ReadPosRankSum=5.108;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:305,174:0.36:479
chr22	32756744	rs2076035	A	G	6975.77	.	AC=1;AF=0.500;AN=2;DB;DP=449;set=Intersection	GT:AD:AF:DP	0/1:146,302:0.67:448
chr22	32756970	rs55744002	G	A	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	32758843	rs11913841	T	C	506.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	32759025	rs5998440	G	C	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	32764388	rs5998456	T	C	4549.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chr22	32790101	rs11396073	C	CT	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.216;ClippingRankSum=0.000;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.64;MQRankSum=-0.712;QD=7.07;ReadPosRankSum=-0.474;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:10,16:0.62:26
chr22	32790972	rs56101849	G	A	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	32790981	rs9680823	C	G	1480.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.31;SOR=4.235;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	32791003	rs2072818	A	C	1733.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	32791929	rs3215463	GC	G	1571.73	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	32794129	.	G	GT	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.292;ClippingRankSum=0.000;DP=139;ExcessHet=3.0103;FS=7.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.35;ReadPosRankSum=-0.709;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:97,19:0.16:116
chr22	32795641	rs5749426	C	T	5998.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	32796174	rs57787050	T	C	3109.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.70;SOR=0.928;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	32796247	rs737779	G	C	3721.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	32796345	rs28418991	T	C	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	32802603	rs41304681	C	G	3720.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	32804313	rs5754073	G	A	1595.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	32804656	rs2076043	G	A	6464.77	.	AC=2;AF=1.00;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chr22	32807961	rs143117259	G	C	1156.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	32808012	rs115236369	G	T	2650.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	32811952	rs5998478	A	G	1735.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.30;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	32813176	.	C	CT	268.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.839;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.34;ReadPosRankSum=0.578;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:5,21:0.81:26
chr22	32828343	rs9609551	T	C	1294.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	32843436	rs4821063	C	T	652.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	32849192	rs7290725	C	T	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	32934225	rs2239765	C	A	4842.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;set=Intersection	GT:AD:AF:DP	1/1:0,180:1.00:180
chr22	32934274	rs2239766	T	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;MQ=60.16;set=Intersection	GT:AD:AF:DP	1/1:1,65:0.98:66
chr22	32937740	rs135479	T	C	8987.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chr22	33229685	rs242077	T	C	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	33229830	rs242076	A	G	5149.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.62;SOR=0.830;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chr22	33253280	rs9862	T	C	3973.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	33562887	rs9609729	G	T	2226.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	33780344	rs150907937	GCTAGGCACAC	G	907.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	33832735	rs713740	A	G	418.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	34022284	rs86487	G	A	4761.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	35478486	rs2899241	A	C	6909.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:1,254:1.00:255
chr22	35478688	rs725267	C	T	7374.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,275:1.00:275
chr22	35481776	rs3810619	T	C	4585.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chr22	35658225	rs4820189	A	G	1605.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	35660875	rs1053593	G	T	3948.77	.	AC=2;AF=1.00;AN=2;DB;DP=149;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	35679951	rs2272789	T	C	9410.77	.	AC=2;AF=1.00;AN=2;DB;DP=364;set=Intersection	GT:AD:AF:DP	1/1:0,363:1.00:363
chr22	35680095	rs2272790	G	A	4327.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	35681893	rs1543303	G	C	349.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	35683238	rs741995	T	C	1018.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	35684533	rs5750093	G	C	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	35695802	rs4461	G	A	1412.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	35696077	rs138728	G	C	2355.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	35810052	rs80433	T	C	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	35812504	.	CTGTGTGTG	C,CTG	3480.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.575;ClippingRankSum=0.000;DP=156;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.15;MQRankSum=0.139;QD=33.15;ReadPosRankSum=0.421;SOR=1.310;set=HC	GT:AD:AF:DP	1/2:2,56,47:0.53,0.45:105
chr22	35817553	rs2071744	C	T	5652.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	35817597	rs133431	C	A	4348.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chr22	36006923	rs35171458	G	GC	4628.73	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	36114047	rs4821438	C	T	4874.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.39;SOR=1.121;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	36114054	rs2899256	C	T	4693.77	.	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=1.201;set=HC	GT:AD:AF:DP	1/1:0,104:1.00:104
chr22	36122517	rs17723764	T	C	13638.77	.	AC=2;AF=1.00;AN=2;DB;DP=512;set=Intersection	GT:AD:AF:DP	1/1:2,509:1.00:511
chr22	36218874	.	C	CT	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.860;ClippingRankSum=0.000;DP=204;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.86;ReadPosRankSum=0.413;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:102,25:0.20:127
chr22	36236288	.	A	G	1067.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;ClippingRankSum=0.000;DP=262;ExcessHet=3.0103;FS=0.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.11;ReadPosRankSum=-1.647;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:188,72:0.28:260
chr22	36424450	rs9607299	A	C	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	36537763	rs61741884	C	T	12053.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:0,442:1.00:442
chr22	36537893	rs3827346	A	G	11666.77	.	AC=2;AF=1.00;AN=2;DB;DP=440;set=Intersection	GT:AD:AF:DP	1/1:0,439:1.00:439
chr22	36545137	rs132642	A	T	2928.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	36545826	rs132644	T	C	3841.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	36553181	rs132649	A	G	5251.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	36556823	rs132653	G	T	8712.77	.	AC=2;AF=1.00;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	1/1:0,326:1.00:326
chr22	36556964	rs916334	C	T	3064.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	36587202	rs6000172	G	A	3094.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	36587223	rs6000173	G	T	3352.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chr22	36587279	rs6000174	A	G	4915.77	.	AC=2;AF=1.00;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	36587486	rs2227167	A	G	14183.77	.	AC=2;AF=1.00;AN=2;DB;DP=529;set=Intersection	GT:AD:AF:DP	1/1:0,525:1.00:525
chr22	36587511	rs2227168	C	T	14274.77	.	AC=2;AF=1.00;AN=2;DB;DP=538;set=Intersection	GT:AD:AF:DP	1/1:0,535:1.00:535
chr22	36587845	rs3075364	A	ACT	20516.73	.	AC=2;AF=1.00;AN=2;DB;DP=783;set=Intersection	GT:AD:AF:DP	1/1:2,761:1.00:763
chr22	36587952	rs2227169	C	T	8703.77	.	AC=2;AF=1.00;AN=2;DB;DP=308;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	36591380	rs2007468	A	G	7237.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr22	36593628	rs112900962	A	AC	7230.73	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,231:1.00:231
chr22	36593640	rs6000178	A	T	10928.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.21;QD=41.87;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	36623731	rs132760	T	C	21692.77	.	AC=2;AF=1.00;AN=2;DB;DP=793;set=Intersection	GT:AD:AF:DP	1/1:0,785:1.00:785
chr22	36623920	rs7285167	G	A	12143.77	.	AC=2;AF=1.00;AN=2;DB;DP=444;set=Intersection	GT:AD:AF:DP	1/1:1,443:1.00:444
chr22	36627521	rs141951757	AAAG	A	9722.73	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:2,375:0.99:377
chr22	36633564	rs916263	T	C	2030.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	36633654	rs5845261	C	CA	8928.73	.	AC=2;AF=1.00;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	1/1:0,222:1.00:222
chr22	36633836	rs916264	A	C	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	36634670	rs1894493	G	C	8763.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr22	36635444	rs136144	A	G	1054.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	36635756	rs5756111	G	A	1522.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	36690113	rs4821478	G	A	5670.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,196:1.00:196
chr22	36691607	rs710181	A	C	2311.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	36695173	rs2187776	C	T	1200.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	36695247	rs4821480	G	T	297.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	36705529	rs1557529	A	G	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	36708084	rs2413396	C	T	3176.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	36708338	rs2157257	A	G	3752.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	36708400	rs34645860	C	CA	1122.73	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	36710047	rs5756141	T	C	1934.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.99;SOR=3.767;set=HC	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	36710056	rs5756142	A	G	2252.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.96;SOR=3.651;set=HC	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	36710183	rs3752462	T	C	11306.77	.	AC=2;AF=1.00;AN=2;DB;DP=427;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr22	36712387	rs5756150	A	G	1029.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	36712400	rs67607973	GA	G	528.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.02;ReadPosRankSum=-0.581;SOR=0.972;set=HC	GT:AD:AF:DP	0/1:8,36:0.82:44
chr22	36712414	rs5756151	C	G	1858.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=36.45;SOR=1.565;set=HC	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	36712472	rs5756152	A	G	2441.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	36716202	rs3833922	C	CT	18067.73	.	AC=2;AF=1.00;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	1/1:0,390:1.00:390
chr22	36716209	rs3752463	G	A	18770.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,437:1.00:437
chr22	36717788	rs201691359	G	A	6222.77	.	AC=2;AF=1.00;AN=2;DB;DP=235;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr22	36722534	rs8136336	G	A	4451.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	36722838	rs11316214	CG	C	4269.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	36723697	rs5756157	T	G	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	36744886	rs56147525	GC	G	9562.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=332;set=Intersection	GT:AD:AF:DP	1/1:3,319:0.99:322
chr22	36744888	rs56084634	C	G	9382.77	.	AC=2;AF=1.00;ALERT;AN=2;BaseQRankSum=-0.123;ClippingRankSum=0.000;DB;DP=331;ExcessHet=3.0103;FS=1.886;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.14;ReadPosRankSum=-2.288;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:5,317:0.98:322
chr22	36744888	.	CCC	GCT	2947	.	AC=2;AF=1.00;AN=2;BRF=0.22;FR=1.0000;HP=11;HapScore=1;MGOF=1;MMLQ=23;MQ=60.0;NF=180;NR=87;PP=2947;QD=20;SC=GAAGACCCGCCCCCCCCCCCC;SbPval=0.45;Source=Platypus;TC=313;TCF=215;TCR=98;TR=267;WE=36744898;WS=36744876;set=Platypus	GT:AD:AF:DP	1/1:46,267:0.85:313
chr22	36744890	rs55932404	C	T	9382.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.466;ClippingRankSum=0.000;DB;DP=341;ExcessHet=3.0103;FS=4.165;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=28.09;ReadPosRankSum=-1.404;SOR=1.768;set=HC	GT:AD:AF:DP	1/1:6,328:0.98:334
chr22	36872750	rs2281082	T	G	4204.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	36891786	rs5756218	G	C	11938.77	.	AC=2;AF=1.00;AN=2;DB;DP=450;set=Intersection	GT:AD:AF:DP	1/1:0,450:1.00:450
chr22	36900271	rs2277841	T	C	10895.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr22	36900806	rs760718	A	G	6272.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chr22	36901817	.	T	TA	168.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.34;MQRankSum=1.585;QD=3.31;ReadPosRankSum=-1.832;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chr22	36907098	rs728785	T	C	10998.77	.	AC=2;AF=1.00;AN=2;DB;DP=437;set=Intersection	GT:AD:AF:DP	1/1:0,434:1.00:434
chr22	36920912	.	G	C	3049.77	.	AC=2;AF=1.00;AN=2;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	37196871	rs3484	G	A	1955.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	37196971	rs2001063	C	A	2019.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	37207319	rs72164769	CTAAA	C	232.80	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	37207667	rs34262500	T	A	1534.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	37333794	rs131840	A	G	5066.77	.	AC=2;AF=1.00;AN=2;DB;DP=189;set=Intersection	GT:AD:AF:DP	1/1:0,189:1.00:189
chr22	37453259	rs710184	A	G	1248.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	37453356	rs79695422	G	A	4158.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	37453452	rs710185	C	T	6594.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr22	37462926	rs2235321	G	A	17108.77	.	AC=2;AF=1.00;AN=2;DB;DP=395;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.31;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,395:1.00:395
chr22	37462936	rs855791	A	G	17225.77	.	AC=2;AF=1.00;AN=2;DB;DP=396;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.50;SOR=0.734;set=HC	GT:AD:AF:DP	1/1:0,396:1.00:396
chr22	37464624	rs877908	T	C	4668.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.68;SOR=1.078;set=HC	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	37465385	rs200434923	CTGGGG	C	1280.73	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	37467270	rs5756504	C	T	879.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	37469386	rs111916270	AGATGGATG	AGATG,A	3392.73	.	AC=2,0;AF=1.00,0.00;AN=2;DB;DP=95;set=Intersection	GT:AF:DP	1/1:1.00:75
chr22	37469591	rs4820268	G	A	8631.77	.	AC=2;AF=1.00;AN=2;DB;DP=322;set=Intersection	GT:AD:AF:DP	1/1:0,322:1.00:322
chr22	37470536	rs2076086	C	T	2031.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	37470604	rs2072860	G	A	4471.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	37471385	rs9610643	G	A	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	37480797	rs2111833	C	T	2756.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	37481041	rs2179229	G	C	6726.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,247:1.00:247
chr22	37485595	rs2235326	T	C	1904.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.09;SOR=3.167;set=HC	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	37485724	rs2235324	T	C	6018.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	37494318	rs732755	T	C	8555.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,290:1.00:290
chr22	37494420	rs732756	T	C	26841.77	.	AC=2;AF=1.00;AN=2;DB;DP=1026;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.26;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,1022:1.00:1022
chr22	37531257	rs3830742	A	AGT	2791.25	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:9,85:0.90:94
chr22	37531436	rs228953	G	A	13286.77	.	AC=2;AF=1.00;AN=2;DB;DP=507;set=Intersection	GT:AD:AF:DP	1/1:0,505:1.00:505
chr22	37532506	rs34577916	A	AC,ACC	1110.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=50;set=Intersection	GT:AF:DP	1/2:0.32,0.59:44
chr22	37533786	rs228957	C	G	8247.77	.	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.96;SOR=1.081;set=HC	GT:AD:AF:DP	1/1:0,192:1.00:192
chr22	37533795	rs228958	G	C	7899.77	.	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.40;SOR=1.127;set=HC	GT:AD:AF:DP	1/1:0,174:1.00:174
chr22	37535328	rs2281093	C	G	3057.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	37539713	rs2235330	T	C	6330.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,249:1.00:249
chr22	37580442	rs11089827	A	T	7157.77	.	AC=2;AF=1.00;AN=2;DB;DP=272;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	37602583	rs11406761	G	GC	15466.73	.	AC=2;AF=1.00;AN=2;DB;DP=458;set=Intersection	GT:AD:AF:DP	1/1:0,455:1.00:455
chr22	37678551	rs3213556	A	G	3319.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:1,121:0.99:122
chr22	37678565	rs3213557	G	A	3815.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	37678814	rs5995410	C	T	934.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	37678837	rs5995411	C	T	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	37888868	rs5756696	G	C	5431.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chr22	37898744	rs140056	G	A	4576.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chr22	37906308	rs113275238	GCTCCTT	G	16598.73	.	AC=2;AF=1.00;AN=2;DB;DP=654;MQ=60.12;set=Intersection	GT:AD:AF:DP	1/1:2,611:1.00:613
chr22	37911880	rs56391261	A	G	169.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chr22	37913936	rs73416266	A	C	3754.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chr22	37915100	rs7287804	A	G	11338.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:0,420:1.00:420
chr22	37915145	rs79861380	C	T	8356.77	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chr22	38015671	rs8138728	T	C	7314.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,263:1.00:263
chr22	38025375	rs2071766	T	C	3219.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	38037105	rs71723818	TC	T	659.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.687;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=4.061;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.73;ReadPosRankSum=-1.316;SOR=0.280;set=HC	GT:AD:AF:DP	0/1:51,47:0.48:98
chr22	38043444	rs3213528	C	A	13747.77	.	AC=2;AF=1.00;AN=2;DB;DP=527;set=Intersection	GT:AD:AF:DP	1/1:0,524:1.00:524
chr22	38044497	rs62235997	C	T	2847.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	38051999	rs12483880	C	T	1320.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	38061520	rs62236667	C	G	4673.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	38071731	.	A	AC	865.73	.	AC=1;AF=0.500;AN=2;DP=59;set=Intersection	GT:AD:AF:DP	0/1:18,40:0.69:58
chr22	38074343	rs62236672	C	T	4100.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	38074434	rs9622682	G	A	11924.77	.	AC=2;AF=1.00;AN=2;DB;DP=431;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chr22	38142319	.	GGGC	G	44	.	AC=1;AF=0.500;AN=2;BRF=0.41;FR=0.5000;HP=3;HapScore=2;MGOF=3;MMLQ=23;MQ=60.26;NF=0;NR=3;PP=44;QD=18.0;SC=CGGCCGAGAGGGGCGGCGGCG;SbPval=1.0;Source=Platypus;TC=16;TCF=2;TCR=14;TR=3;WE=38142329;WS=38142309;set=Platypus	GT:AD:AF:DP	0/1:13,3:0.19:16
chr22	38259110	rs61195610	CT	C	381.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.402;ClippingRankSum=0.000;DB;DP=205;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.952;QD=2.85;ReadPosRankSum=3.694;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:80,54:0.40:134
chr22	38273749	rs9466	T	C	6905.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.87;QD=26.36;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr22	38302607	.	G	A	2197.77	.	AC=2;AF=1.00;AN=2;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.86;SOR=0.815;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chr22	38307909	rs6519091	T	C	17524.77	.	AC=2;AF=1.00;AN=2;DB;DP=670;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.20;SOR=0.878;set=HC	GT:AD:AF:DP	1/1:0,669:1.00:669
chr22	38308048	.	ATGTGTG	A,ATG	8328.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=294;set=Intersection	GT:AF:DP	1/2:0.13,0.85:211
chr22	38308291	rs1003689	C	T	2183.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	38313552	rs9607500	G	A	2911.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:1,102:0.99:103
chr22	38323507	rs9610875	G	T	12253.77	.	AC=2;AF=1.00;AN=2;DB;DP=447;set=Intersection	GT:AD:AF:DP	1/1:0,444:1.00:444
chr22	38453679	rs5845366	A	AG	2420.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	38481516	rs9610902	G	A	1080.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	38482352	rs66500630	GTGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	G	1821.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	38483155	rs142739979	T	TTCATGGGTG	7880.73	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	38485064	rs62235125	C	G	3164.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.968;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	38485281	.	G	C	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	38485282	.	GGGGC	G	98.25	.	AC=2;AF=1.00;ALERT;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.75;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	38485540	rs17856487	A	G	616.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	38490056	rs4373009	C	T	2474.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	38494005	rs147676763	CGGTCTCGCCCCGA	C	3412.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	38503847	rs6001006	C	T	18486.77	.	AC=2;AF=1.00;AN=2;DB;DP=698;set=Intersection	GT:AD:AF:DP	1/1:0,696:1.00:696
chr22	38504372	rs5750540	T	C	2530.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chr22	38506509	rs4820313	A	G	7212.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chr22	38530956	rs2272831	G	A	984.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	38539041	rs4375	T	C	5019.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	38540837	rs132935	CATAAA	C	1914.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.17;QD=41.62;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	38563972	rs132988	T	C	18828.77	.	AC=2;AF=1.00;AN=2;DB;DP=713;set=Intersection	GT:AD:AF:DP	1/1:0,712:1.00:712
chr22	38617333	rs2235265	T	C	1250.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	38917543	.	TACACACACAC	T	1813.73	.	AC=2;AF=1.00;AN=2;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=37.79;SOR=2.165;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	38934515	rs4987164	C	G	6664.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chr22	38958260	rs11570392	G	A	1775.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	38982031	rs16999109	C	A	3797.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	38982321	rs5750627	T	C	327.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	39003495	rs5757169	G	A	7241.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	39003519	rs58596856	G	A	6376.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.68;SOR=1.267;set=HC	GT:AD:AF:DP	1/1:0,146:1.00:146
chr22	39016182	rs4821797	T	C	537.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	39024961	rs5995602	G	T	2051.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	39034786	rs16999173	C	T	9048.77	.	AC=2;AF=1.00;AN=2;DB;DP=339;set=Intersection	GT:AD:AF:DP	1/1:0,339:1.00:339
chr22	39066851	rs3761455	G	A	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	39079920	rs368066955	AT	A	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=6.658;MLEAC=1;MLEAF=0.500;MQ=60.56;MQRankSum=1.919;QD=3.65;ReadPosRankSum=-0.143;SOR=0.069;set=HC	GT:AD:AF:DP	0/1:27,17:0.39:44
chr22	39178701	rs760482	A	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.56;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,132:1.00:132
chr22	39222652	rs5757299	G	A	6946.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,259:1.00:259
chr22	39224248	rs5757300	T	C	12134.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,461:1.00:461
chr22	39239172	rs3747176	C	G	471.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	39267312	rs1122771	C	T	571.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	39382079	rs5995649	C	A	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	1/1:0,176:1.00:176
chr22	39419112	.	C	CTATTTATTTATTTATTTATT	578.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.45;QD=44.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	39440149	rs5750728	C	T	10664.77	.	AC=2;AF=1.00;AN=2;DB;DP=404;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chr22	39441096	rs2020390	G	T	6190.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr22	39441203	rs4821862	C	T	5813.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	39445380	rs2014881	G	A	2664.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	39445554	rs2076101	G	A	9580.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,368:1.00:368
chr22	39448711	rs6001402	C	A	5094.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	39448750	rs5757451	T	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	39477658	rs17496018	C	T	3802.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,140:1.00:140
chr22	39477711	rs17537548	G	GC	3175.73	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,100:1.00:100
chr22	39482267	rs17496039	C	T	3967.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	39482371	rs17496046	C	G	4479.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chr22	39496412	rs139294	G	C	4776.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	39497404	rs139297	G	C	5158.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	39497452	rs139298	A	G	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.33;SOR=1.672;set=HC	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	39497452	.	AAG	GAC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.29;FR=1.0000;HP=1;HapScore=1;MGOF=21;MMLQ=23;MQ=60.0;NF=30;NR=57;PP=2947;QD=20;SC=GCCCCAGCAGAAGGGGCTGCG;SbPval=0.67;Source=Platypus;TC=93;TCF=35;TCR=58;TR=87;WE=39497462;WS=39497442;set=Platypus	GT:AD:AF:DP	1/1:6,87:0.94:93
chr22	39497454	rs139299	G	C	4982.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.57;SOR=1.841;set=HC	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	39497509	rs139300	A	G	1336.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	39497811	rs139301	A	G	1024.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	39498038	rs139302	G	C	6484.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chr22	39498373	rs139304	TA	T	1094.73	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	39498479	rs149229175	TCTC	T	4988.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,113:1.00:113
chr22	39498677	rs139305	A	C	1004.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	39499575	rs139313	G	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	39499653	rs139315	C	T	4378.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	39499763	rs139316	T	C	7052.77	.	AC=2;AF=1.00;AN=2;DB;DP=275;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	39499902	rs139317	C	T	1462.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chr22	39629329	rs11704525	C	A	5286.77	.	AC=2;AF=1.00;AN=2;DB;DP=194;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chr22	39629609	rs9622979	G	A	2497.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	39636899	rs150503603	G	GTC,GTCTC	2674.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;set=Intersection	GT:AF:DP	1/2:0.16,0.79:73
chr22	39636928	rs5757575	A	G	800.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.233;ClippingRankSum=0.000;DB;DP=59;ExcessHet=3.0103;FS=3.099;MLEAC=2;MLEAF=1.000;MQ=59.27;MQRankSum=0.000;QD=25.02;ReadPosRankSum=1.052;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:2,30:0.94:32
chr22	39636928	.	ACA	GCG	1713	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=1.0000;HP=2;HapScore=1;MGOF=32;MMLQ=23;MQ=59.29;NF=12;NR=26;PP=1713;QD=46.4859967069;SC=TCAGATGCGCACACACACACA;SbPval=0.59;Source=Platypus;TC=43;TCF=14;TCR=29;TR=38;WE=39636957;WS=39636918;set=Platypus	GT:AD:AF:DP	1/1:5,38:0.88:43
chr22	39636930	rs5757576	A	G	1159.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.21;QD=28.29;SOR=2.038;set=HC	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	39636944	rs138673005	ACACTCT	ACT,A	574.94	.	AC=1,0;AF=0.500,0.00;AN=2;DB;DP=45;set=Intersection	GT:AF:DP	0/1:0.79:33
chr22	39639853	rs1800817	G	T	9270.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.40;SOR=0.983;set=HC	GT:AD:AF:DP	1/1:0,365:1.00:365
chr22	39709776	rs137620	T	C	13326.77	.	AC=2;AF=1.00;AN=2;DB;DP=501;set=Intersection	GT:AD:AF:DP	1/1:0,498:1.00:498
chr22	39710244	rs137621	G	A	2178.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.94;SOR=0.843;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	39712981	rs137623	A	G	4667.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	39713105	rs470081	C	T	1306.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	39714490	rs6509	C	T	12778.77	.	AC=2;AF=1.00;AN=2;DB;DP=463;set=Intersection	GT:AD:AF:DP	1/1:0,462:1.00:462
chr22	39714715	.	G	A	835.77	.	AC=2;AF=1.00;AN=2;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	39714908	rs137625	A	G	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	39715113	.	T	C	5637.77	.	AC=2;AF=1.00;AN=2;DP=216;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr22	39715140	rs470082	C	T	4268.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chr22	39746186	rs142884306	ACCGACC	A	2790.73	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:2,105:0.98:107
chr22	39770597	rs4821888	A	G	11373.77	.	AC=2;AF=1.00;AN=2;DB;DP=420;set=Intersection	GT:AD:AF:DP	1/1:1,419:1.00:420
chr22	39770780	rs4820377	G	A	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	39777822	rs149306472	C	CCAA	42544.73	.	AC=2;AF=1.00;AN=2;DB;DP=997;set=Intersection	GT:AD:AF:DP	1/1:0,947:1.00:947
chr22	39795683	rs4821892	G	C	1215.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	39812986	rs6001585	C	A	2360.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	39882149	rs34708754	AT	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.67;MQRankSum=1.182;QD=3.75;ReadPosRankSum=1.613;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chr22	39966856	rs3747178	C	T	9832.77	.	AC=2;AF=1.00;AN=2;DB;DP=386;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.886;set=HC	GT:AD:AF:DP	1/1:0,382:1.00:382
chr22	39969767	rs5750851	T	C	2380.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.855;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	40030477	rs5757756	C	A	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	40043812	rs5757759	A	G	1932.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.43;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	40052646	rs112171045	G	GGAAT	11219.73	.	AC=2;AF=1.00;AN=2;DB;DP=305;set=Intersection	GT:AD:AF:DP	1/1:8,254:0.97:262
chr22	40054428	rs136848	T	G	2873.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	40054948	rs5757761	T	C	8888.77	.	AC=2;AF=1.00;AN=2;DB;DP=335;set=Intersection	GT:AD:AF:DP	1/1:0,335:1.00:335
chr22	40055304	rs136850	T	C	1859.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	40055896	rs136851	T	C	3980.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	40057273	rs136852	T	C	7218.77	.	AC=2;AF=1.00;AN=2;DB;DP=281;set=Intersection	GT:AD:AF:DP	1/1:1,279:1.00:280
chr22	40058186	rs136853	A	G	18167.77	.	AC=2;AF=1.00;AN=2;DB;DP=715;set=Intersection	GT:AD:AF:DP	1/1:0,711:1.00:711
chr22	40060658	.	C	CA	446.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	40060659	.	G	A	455.77	.	AC=2;AF=1.00;ALERT;AN=2;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	40068051	rs4820386	C	T	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	40068853	rs2235342	T	C	3573.77	.	AC=2;AF=1.00;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	40069245	rs738315	T	C	1085.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	40070234	rs714031	T	C	584.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	40075473	rs7288746	T	C	1034.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	40161181	.	TTG	T	83.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.661;ClippingRankSum=0.000;DP=108;ExcessHet=3.0103;FS=7.261;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.85;ReadPosRankSum=-1.126;SOR=1.981;set=HC	GT:AD:AF:DP	0/1:82,16:0.16:98
chr22	40364394	rs138009	C	G	2164.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	40641980	rs3752513	G	A	1847.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.40;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,70:1.00:70
chr22	40666317	rs372710238	CT	C	65.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.040;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=1.327;QD=2.99;ReadPosRankSum=0.271;SOR=0.818;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chr22	40673999	rs2413621	C	T	6152.77	.	AC=2;AF=1.00;AN=2;DB;DP=227;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chr22	40676986	rs5750929	T	A	985.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	40677001	rs929070	T	C	1335.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	40697464	.	T	C	1088.77	.	AC=2;AF=1.00;AN=2;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	40915718	rs5757976	C	T	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	41075543	rs133072	A	G	3668.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	41075695	rs133073	C	T	10257.77	.	AC=2;AF=1.00;AN=2;DB;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,387:1.00:387
chr22	41170063	rs2076674	T	C	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chr22	41172351	rs6002128	A	G	2490.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	41175263	rs5758077	C	T	1021.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	41190375	.	A	G	3185.77	.	AC=2;AF=1.00;AN=2;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	41194947	rs113368977	CA	C	374.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=1.950;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=1.612;QD=1.35;ReadPosRankSum=1.332;SOR=0.848;set=HC	GT:AD:AF:DP	0/1:209,69:0.25:278
chr22	41223395	.	A	G	1149.77	.	AC=2;AF=1.00;AN=2;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	41256660	rs202011264	CT	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=3.382;MLEAC=1;MLEAF=0.500;MQ=60.31;MQRankSum=1.509;QD=1.67;ReadPosRankSum=-0.277;SOR=0.263;set=HC	GT:AD:AF:DP	0/1:23,11:0.32:34
chr22	41302973	rs5995963	A	T	4530.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	41537234	rs6002267	G	T	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	41543741	.	C	CA	78.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.375;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=4.700;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=0.861;SOR=1.646;set=HC	GT:AD:AF:DP	0/1:50,15:0.23:65
chr22	41545024	rs71761046	G	GT	520.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;ClippingRankSum=0.000;DB;DP=180;ExcessHet=3.0103;FS=1.480;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=2.019;QD=3.06;ReadPosRankSum=0.091;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:117,53:0.31:170
chr22	41550984	.	C	CT	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;ClippingRankSum=0.000;DP=267;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.04;MQRankSum=2.188;QD=0.47;ReadPosRankSum=-0.060;SOR=0.668;set=HC	GT:AD:AF:DP	0/1:219,42:0.16:261
chr22	41573929	.	A	T	3901.77	.	AC=1;AF=0.500;AN=2;DP=673;set=Intersection	GT:AD:AF:DP	0/1:455,216:0.32:671
chr22	41604353	rs139431	C	T	1476.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	41604557	rs139432	G	A	560.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	41605635	rs139437	T	C	4023.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.71;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,90:1.00:90
chr22	41605639	rs139438	C	T	4096.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.58;SOR=1.396;set=HC	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	41606030	rs139439	A	C	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	41609859	rs139450	T	C	2779.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	41610024	rs139451	G	A	2687.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	41612965	rs85220	T	G	1046.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	41617160	rs139471	T	TG	2392.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	41617318	rs139472	G	C	10400.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:1,394:1.00:395
chr22	41635425	rs139495	C	T	9569.77	.	AC=2;AF=1.00;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	1/1:0,360:1.00:360
chr22	41645500	rs139500	TG	T	8626.73	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,283:1.00:283
chr22	41645757	rs71948	C	G	5802.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chr22	41652345	rs470112	C	G	2882.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	41652733	rs139509	G	A	10448.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr22	41660964	rs139520	A	G	2076.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	41676559	rs35821769	C	CAGCT	891.73	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:2,30:0.94:32
chr22	41737242	.	G	C	443.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.70;ReadPosRankSum=-1.749;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:88,32:0.27:120
chr22	41829794	rs6609	C	G	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=49.89;QD=29.24;SOR=1.522;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	41833116	rs202641	C	T	27992.77	.	AC=2;AF=1.00;AN=2;DB;DP=1047;set=Intersection	GT:AD:AF:DP	1/1:0,1045:1.00:1045
chr22	41864216	rs505533	A	C	3667.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.77;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	41911525	rs1799932	C	T	2569.77	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.96;SOR=0.754;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	42016699	rs2267437	C	G	4339.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,149:1.00:149
chr22	42076381	rs5758405	C	A	4533.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chr22	42089623	rs739134	T	C	18584.77	.	AC=2;AF=1.00;AN=2;DB;DP=704;set=Intersection	GT:AD:AF:DP	1/1:0,699:1.00:699
chr22	42101712	.	CT	C	56.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.064;ClippingRankSum=0.000;DP=89;ExcessHet=3.0103;FS=1.833;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=1.618;QD=1.00;ReadPosRankSum=0.377;SOR=1.078;set=HC	GT:AD:AF:DP	0/1:41,16:0.28:57
chr22	42109917	rs5758431	A	G	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	42111896	rs9306355	A	T	1910.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	42139054	rs5751147	G	A	2017.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	42139078	rs5751148	A	G	3073.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	42140792	rs56663311	G	A	961.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.39;QD=45.80;SOR=2.636;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chr22	42140793	rs62236786	C	T	961.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.47;QD=43.72;SOR=2.737;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	42140798	rs56138604	G	A	1051.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.53;QD=45.73;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	42140800	rs58323591	C	CTTTG	1042.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	42148467	rs715498	G	A	4162.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,152:1.00:152
chr22	42150146	rs1534932	C	T	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chr22	42159229	rs2050033	G	T	9843.77	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr22	42177867	.	G	A	2751.77	.	AC=2;AF=1.00;AN=2;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	42336172	rs5758511	G	A	19460.77	.	AC=2;AF=1.00;AN=2;DB;DP=733;set=Intersection	GT:AD:AF:DP	1/1:0,731:1.00:731
chr22	42339525	rs10483213	G	A	1091.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	42341451	.	A	AT	80.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;ClippingRankSum=-0.000;DP=51;ExcessHet=3.0103;FS=10.710;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.48;ReadPosRankSum=-1.403;SOR=0.020;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chr22	42354389	rs62240996	A	C	11346.77	.	AC=2;AF=1.00;AN=2;DB;DP=413;set=Intersection	GT:AD:AF:DP	1/1:0,411:1.00:411
chr22	42354487	rs149263017	G	GGA,GGAGA	1872.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.140;ClippingRankSum=0.000;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.23;MQRankSum=0.000;QD=31.21;ReadPosRankSum=2.992;SOR=0.965;set=HC	GT:AD:AF:DP	1/2:5,14,41:0.23,0.68:60
chr22	42390887	rs370320875	CTGTG	C,CTG	1899.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.899;ClippingRankSum=0.000;DB;DP=190;ExcessHet=3.0103;FS=1.422;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.11;MQRankSum=0.562;QD=21.59;ReadPosRankSum=1.232;SOR=0.473;set=HC	GT:AD:AF:DP	1/2:11,23,54:0.26,0.61:88
chr22	42415224	rs11389397	C	CA	218.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.88;ReadPosRankSum=-1.870;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:48,28:0.37:76
chr22	42473860	rs1807493	C	G	5353.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	42474138	rs1807494	C	G	1820.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	42475703	rs2269524	T	G	1440.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	42486723	rs1801311	G	A	26304.77	.	AC=2;AF=1.00;AN=2;DB;DP=1000;set=Intersection	GT:AD:AF:DP	1/1:0,997:1.00:997
chr22	42524047	.	C	G	1727.77	.	AC=1;AF=0.500;AN=2;DP=270;set=Intersection	GT:AD:AF:DP	0/1:174,96:0.36:270
chr22	42537023	rs2860372	T	C	516.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	42538489	rs151338796	G	A	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chr22	42538876	rs3020732	A	T	23025.77	.	AC=2;AF=1.00;AN=2;DB;DP=524;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=44.03;SOR=0.925;set=HC	GT:AD:AF:DP	1/1:0,523:1.00:523
chr22	42538885	rs2743460	G	T	22182.77	.	AC=2;AF=1.00;AN=2;DB;DP=514;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.97;QD=43.24;SOR=0.902;set=HC	GT:AD:AF:DP	1/1:0,513:1.00:513
chr22	42575496	rs57857271	CA	C	57.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.314;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=15.212;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=2.002;SOR=3.352;set=HC	GT:AD:AF:DP	0/1:26,14:0.35:40
chr22	42606257	rs2070116	C	T	7804.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,294:1.00:294
chr22	42910898	.	T	C	139.84	.	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.85;QD=23.31;SOR=3.912;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	42911103	rs145280443	C	A	70.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.00;QD=23.43;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	42912501	rs5751292	A	T	762.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.44;QD=25.43;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	42951978	.	G	GC	686.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.388;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=9.212;MLEAC=1;MLEAF=0.500;MQ=51.05;MQRankSum=-7.342;QD=8.18;ReadPosRankSum=0.027;SOR=1.660;set=HC	GT:AD:AF:DP	0/1:45,39:0.46:84
chr22	42993786	rs72451410	CT	C	385.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;ClippingRankSum=0.000;DB;DP=238;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=0.000;QD=2.74;ReadPosRankSum=-0.530;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:91,50:0.35:141
chr22	43088971	rs9623659	C	T	10091.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,374:1.00:374
chr22	43089055	rs6002904	G	C	8756.77	.	AC=2;AF=1.00;AN=2;DB;DP=328;set=Intersection	GT:AD:AF:DP	1/1:0,327:1.00:327
chr22	43089849	rs11541159	T	C	11008.77	.	AC=2;AF=1.00;AN=2;DB;DP=430;set=Intersection	GT:AD:AF:DP	1/1:0,427:1.00:427
chr22	43193641	rs4393836	G	A	7046.77	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chr22	43203281	rs2273141	T	C	925.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	43206950	rs1018448	A	C	6094.77	.	AC=2;AF=1.00;AN=2;DB;DP=232;set=Intersection	GT:AD:AF:DP	1/1:0,232:1.00:232
chr22	43218463	rs5758957	C	T	6938.77	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chr22	43223095	rs10654612	C	CAT	2467.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chr22	43253986	rs3046483	C	CTT	1241.73	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	43275250	rs2073199	G	A	4475.77	.	AC=2;AF=1.00;AN=2;DB;DP=170;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chr22	43278148	rs5759010	C	T	5930.77	.	AC=2;AF=1.00;AN=2;DB;DP=218;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	43280650	rs2273143	T	C	2479.77	.	AC=2;AF=1.00;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	43287206	.	G	A	1163.77	.	AC=2;AF=1.00;AN=2;DP=41;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	43289738	rs2076158	C	T	5089.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	43435668	rs2072883	G	A	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	43435812	rs1052163	C	T	5014.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.72;SOR=0.724;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chr22	43442599	rs5759111	T	C	2916.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,115:1.00:115
chr22	43520258	rs4988417	A	C	834.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chr22	43523921	rs4988434	A	ACT	3590.73	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chr22	43538780	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;ClippingRankSum=0.000;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.08;ReadPosRankSum=0.726;SOR=0.476;set=HC	GT:AD:AF:DP	0/1:35,10:0.22:45
chr22	43555194	rs3937387	C	G	9789.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,386:1.00:386
chr22	43564963	rs138931	C	G	1176.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	43564978	rs9623764	C	T	964.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	43565703	rs2071727	C	T	8100.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chr22	43568512	rs34074034	C	T	17185.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:2,672:1.00:674
chr22	43568707	rs368382622	CT	C	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.07;ReadPosRankSum=-3.836;SOR=0.466;set=HC	GT:AD:AF:DP	0/1:38,13:0.25:51
chr22	43570068	rs762953	G	A	2204.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	43570463	rs2269525	A	G	4983.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chr22	43570659	rs2269526	A	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	43575774	rs138945	A	C	7111.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,265:1.00:265
chr22	43583051	rs146647114	G	A	2034.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	43583184	.	GCGC	G	412	.	AC=2;AF=1.00;AN=2;BRF=0.46;FR=1.0000;HP=1;HapScore=2;MGOF=21;MMLQ=25;MQ=57.67;NF=0;NR=8;PP=412;QD=55.875;SC=CCTCCTCCCAGCGCCCCCCCC;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=8;WE=43583194;WS=43583174;set=Platypus	GT:AD:AF:DP	1/1:1,8:0.89:9
chr22	43606143	rs5759217	C	T	10553.77	.	AC=2;AF=1.00;AN=2;DB;DP=398;set=Intersection	GT:AD:AF:DP	1/1:0,398:1.00:398
chr22	43610207	rs138993	A	G	13238.77	.	AC=2;AF=1.00;AN=2;DB;DP=548;set=Intersection	GT:AD:AF:DP	1/1:4,516:0.99:520
chr22	43614588	rs5759218	A	G	1043.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chr22	43623612	rs55853243	G	A	2924.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	43830848	rs6519374	C	T	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	43830996	rs2413761	C	T	25236.77	.	AC=2;AF=1.00;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	1/1:0,963:1.00:963
chr22	43831056	rs4331615	C	T	24697.77	.	AC=2;AF=1.00;AN=2;DB;DP=946;set=Intersection	GT:AD:AF:DP	1/1:2,943:1.00:945
chr22	43976396	rs9614382	G	A	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	43976675	rs4823114	G	A	771.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	43986134	rs45466597	T	C	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	44022207	rs137723	A	G	826.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	44022578	rs110618	C	A	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	44062938	rs12628197	G	A	1348.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chr22	44127473	rs2103612	G	A	102.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	44131786	rs3747203	T	C	13064.77	.	AC=2;AF=1.00;AN=2;DB;DP=504;set=Intersection	GT:AD:AF:DP	1/1:2,498:1.00:500
chr22	44229492	rs138069	G	C	4597.77	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	44276544	rs12485136	G	A	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	44277406	rs55905376	C	T	8185.77	.	AC=2;AF=1.00;AN=2;DB;DP=301;set=Intersection	GT:AD:AF:DP	1/1:0,301:1.00:301
chr22	44280412	rs5764011	G	T	3181.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	44285428	rs62226145	G	A	996.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	44285667	rs713864	G	A	1244.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	44285765	rs2017461	A	G	3964.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.920;set=HC	GT:AD:AF:DP	1/1:0,154:1.00:154
chr22	44287062	rs2071884	A	G	7861.77	.	AC=2;AF=1.00;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chr22	44324727	rs738409	C	G	11972.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.18;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,271:1.00:271
chr22	44324730	rs738408	C	T	11834.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.17;SOR=0.788;set=HC	GT:AD:AF:DP	1/1:0,262:1.00:262
chr22	44324855	rs3747207	G	A	1589.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	44328730	rs4823173	G	A	4573.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chr22	44332878	rs34879941	C	T	1922.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	44332888	rs36038527	T	TC	2528.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,77:1.00:77
chr22	44333172	rs2072906	A	G	2254.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chr22	44335744	rs2073081	T	C	1936.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	44342116	rs2294918	A	G	12204.77	.	AC=2;AF=1.00;AN=2;DB;DP=489;set=Intersection	GT:AD:AF:DP	1/1:2,477:1.00:479
chr22	44364594	rs5764434	C	T	5871.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chr22	44364794	rs2273031	T	C	874.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	44368122	rs3761472	A	G	2812.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	44368204	rs3177036	A	G	2470.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.57;SOR=1.006;set=HC	GT:AD:AF:DP	1/1:0,93:1.00:93
chr22	44368728	rs34361615	A	AT	1552.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.232;ClippingRankSum=0.000;DB;DP=157;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.49;ReadPosRankSum=-2.693;SOR=0.659;set=HC	GT:AD:AF:DP	0/1:39,109:0.74:148
chr22	44368740	.	TC	T	761	.	AC=2;AF=1.00;AN=2;BRF=0.25;FR=1.0000;HP=11;HapScore=2;MGOF=4;MMLQ=24;MQ=59.94;NF=28;NR=36;PP=761;QD=11.984375;SC=TTTTTTTTTTTCCCCTCCTAG;SbPval=0.48;Source=Platypus;TC=119;TCF=50;TCR=69;TR=64;WE=44368749;WS=44368718;set=Platypus	GT:AD:AF:DP	1/1:55,64:0.54:119
chr22	44368741	rs932430	C	T	4339.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.916;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.459;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=29.13;ReadPosRankSum=-0.613;SOR=1.187;set=HC	GT:AD:AF:DP	1/1:8,141:0.95:149
chr22	44372069	rs2073084	G	A	6733.77	.	AC=2;AF=1.00;AN=2;DB;DP=253;set=Intersection	GT:AD:AF:DP	1/1:0,252:1.00:252
chr22	44372190	rs2073085	C	T	1303.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	44372632	rs14315	C	T	7637.77	.	AC=2;AF=1.00;AN=2;DB;DP=291;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chr22	44377442	rs4823182	A	G	1672.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	44379740	rs2294923	C	A	10245.77	.	AC=2;AF=1.00;AN=2;DB;DP=385;set=Intersection	GT:AD:AF:DP	1/1:0,384:1.00:384
chr22	44379822	rs10452	T	C	14525.77	.	AC=2;AF=1.00;AN=2;DB;DP=567;set=Intersection	GT:AD:AF:DP	1/1:0,565:1.00:565
chr22	44379838	rs8418	A	G	14216.77	.	AC=2;AF=1.00;AN=2;DB;DP=554;set=Intersection	GT:AD:AF:DP	1/1:0,551:1.00:551
chr22	44395389	rs2281292	A	C	7608.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chr22	44395451	rs1007863	T	C	9107.77	.	AC=2;AF=1.00;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	1/1:0,351:1.00:351
chr22	44420118	rs111806469	C	G	71.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=17.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	44420156	rs112388263	T	A	223.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=22.38;SOR=1.085;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	44489868	rs1983609	T	C	6954.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,267:1.00:267
chr22	44514809	rs5764541	C	T	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	44532145	rs117315225	G	A	872.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	44535904	rs11270419	G	GCTTTCTGGCTGGCTCTGTCCCTCATCCTCCA	1465.73	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	44559645	rs139079	C	T	6253.77	.	AC=2;AF=1.00;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	1/1:1,222:1.00:223
chr22	44559842	rs139081	A	G	10783.77	.	AC=2;AF=1.00;AN=2;DB;DP=406;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr22	44564297	rs139095	A	C	298.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chr22	44581549	rs6006693	G	A	2641.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chr22	44582499	rs79478	T	C	18419.77	.	AC=2;AF=1.00;AN=2;DB;DP=717;set=Intersection	GT:AD:AF:DP	1/1:0,714:1.00:714
chr22	44589857	rs139142	T	G	2914.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	44594476	rs139151	T	C	10968.77	.	AC=2;AF=1.00;AN=2;DB;DP=416;set=Intersection	GT:AD:AF:DP	1/1:0,410:1.00:410
chr22	44594739	rs142865703	T	TATCC	1803.73	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	44601499	rs139184	C	G	3471.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	44602229	rs139186	A	C	10591.77	.	AC=2;AF=1.00;AN=2;DB;DP=408;set=Intersection	GT:AD:AF:DP	1/1:0,406:1.00:406
chr22	44681612	rs135388	A	G	5687.77	.	AC=2;AF=1.00;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	1/1:0,212:1.00:212
chr22	44893563	rs5765689	A	G	490.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	44965320	rs138593	G	A	6118.77	.	AC=2;AF=1.00;AN=2;DB;DP=226;set=Intersection	GT:AD:AF:DP	1/1:0,225:1.00:225
chr22	44967767	rs138596	C	G	1700.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	45075738	rs763213	T	C	3089.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.778;set=HC	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	45205158	.	G	GT	63.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.094;ClippingRankSum=0.000;DP=124;ExcessHet=3.0103;FS=0.974;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.152;QD=0.59;ReadPosRankSum=-0.204;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:89,19:0.18:108
chr22	45218223	rs136662	C	T	6339.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,234:1.00:234
chr22	45243780	rs9626578	G	A	7416.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chr22	45244001	rs9626251	C	T	4780.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	45255727	rs2349855	G	C	8074.77	.	AC=2;AF=1.00;AN=2;DB;DP=319;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chr22	45255779	rs2882262	A	G	4389.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chr22	45258495	rs8777	A	G	8261.77	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,310:1.00:310
chr22	45404335	rs74671205	G	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	45577372	rs372438307	TCAAGTGGAACAGGAAAGAATTCTTGGCCAGTTTATTTA	TTGGAACAGGAAAGAATTCTTGGCCAGTTTATTTA,T	2871.73	.	AC=2,0;AF=1.00,0.00;ALERT;AN=2;DB;DP=83;set=Intersection	GT:AF:DP	1/1:1.00:65
chr22	45577377	rs376698610	TGGAACAGGAAAGAATTCTTGGCCAGTTTATTTAA	T	2852.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.89;SOR=2.566;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	45577411	.	A	T	476	.	AC=2;AF=1.00;AN=2;BRF=0.38;FR=1.0000;HP=4;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=7;NR=14;PP=476;QD=24.3224386927;SC=AGTTTATTTAAAAATCCAGTT;SbPval=0.31;Source=Platypus;TC=27;TCF=7;TCR=20;TR=21;WE=45577419;WS=45577362;set=Platypus	GT:AD:AF:DP	1/1:6,21:0.78:27
chr22	45579422	rs6006950	A	G	3016.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.01;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	45595721	rs5765217	A	G	6316.77	.	AC=2;AF=1.00;AN=2;DB;DP=241;set=Intersection	GT:AD:AF:DP	1/1:0,240:1.00:240
chr22	45598833	rs732373	C	T	4254.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chr22	45685002	rs1135360	A	G	11512.77	.	AC=2;AF=1.00;AN=2;DB;DP=443;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chr22	45718922	rs34063912	C	CTG	830.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=3.169;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.59;ReadPosRankSum=-1.568;SOR=1.483;set=HC	GT:AD:AF:DP	0/1:28,38:0.58:66
chr22	45723854	rs9615108	C	G	8771.77	.	AC=2;AF=1.00;AN=2;DB;DP=330;set=Intersection	GT:AD:AF:DP	1/1:0,329:1.00:329
chr22	45723960	rs9614638	G	A	2250.31	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.056;ClippingRankSum=0.000;DB;DP=66;ExcessHet=3.0103;FS=2.422;MLEAC=2;MLEAF=1.000;MQ=59.08;MQRankSum=4.823;QD=34.10;ReadPosRankSum=-0.885;SOR=2.019;set=HC	GT:AD:AF:DP	1/1:4,62:0.94:66
chr22	45723968	rs28412847	C	T	1779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.757;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=2.407;MLEAC=1;MLEAF=0.500;MQ=58.68;MQRankSum=3.963;QD=38.69;ReadPosRankSum=0.304;SOR=1.900;set=HC	GT:AD:AF:DP	0/1:4,42:0.91:46
chr22	45726345	rs7285172	A	G	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chr22	45728632	.	C	CT	79.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;ClippingRankSum=0.000;DP=81;ExcessHet=3.0103;FS=1.495;MLEAC=1;MLEAF=0.500;MQ=60.27;MQRankSum=2.506;QD=1.45;ReadPosRankSum=-1.407;SOR=0.980;set=HC	GT:AD:AF:DP	0/1:42,13:0.24:55
chr22	45731182	rs738176	C	T	4493.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	45732328	rs11704481	G	A	4121.77	.	AC=2;AF=1.00;AN=2;DB;DP=154;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chr22	45736153	rs3827393	G	A	602.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	45736485	rs2064068	C	T	1854.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	45741543	rs5765260	G	C	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	45741642	rs117203058	A	T	518.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	45748284	rs11375006	C	CT	5043.73	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	45748339	rs5765275	A	G	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,187:1.00:187
chr22	45749801	rs9614652	C	A	396.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.80;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	45749983	rs5764698	G	T	13258.77	.	AC=2;AF=1.00;AN=2;DB;DP=518;set=Intersection	GT:AD:AF:DP	1/1:2,511:1.00:513
chr22	45754517	rs5764701	G	T	1108.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	45754558	rs5765281	A	G	1963.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	45755666	rs1012493	C	T	15563.77	.	AC=2;AF=1.00;AN=2;DB;DP=594;set=Intersection	GT:AD:AF:DP	1/1:0,588:1.00:588
chr22	45757987	rs5764704	C	T	1732.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chr22	45758758	rs719925	T	C	5313.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	45789642	rs136603	A	C	4062.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:1,152:0.99:153
chr22	45810278	rs59404993	A	AC	12506.73	.	AC=2;AF=1.00;AN=2;DB;DP=355;set=Intersection	GT:AD:AF:DP	1/1:0,345:1.00:345
chr22	45897997	rs3810631	T	C	3842.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chr22	45898074	rs3810632	T	C	12716.77	.	AC=2;AF=1.00;AN=2;DB;DP=474;set=Intersection	GT:AD:AF:DP	1/1:0,472:1.00:472
chr22	45898117	rs3810633	T	C	17399.77	.	AC=2;AF=1.00;AN=2;DB;DP=657;set=Intersection	GT:AD:AF:DP	1/1:0,655:1.00:655
chr22	45898130	rs3810634	A	T	16779.77	.	AC=2;AF=1.00;AN=2;DB;DP=631;set=Intersection	GT:AD:AF:DP	1/1:0,630:1.00:630
chr22	45898252	rs3810635	T	G	3740.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	45914675	rs78488153	T	C	8693.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,338:1.00:338
chr22	45918877	rs2018279	A	T	935.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.984;set=HC	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	45919038	rs150868662	G	A	1307.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.15;SOR=0.770;set=HC	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	45923827	rs136730	A	G	4969.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.16;SOR=0.780;set=HC	GT:AD:AF:DP	1/1:0,190:1.00:190
chr22	45924001	rs136731	T	TG	612.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	45929577	rs105199	T	C	7179.77	.	AC=2;AF=1.00;AN=2;DB;DP=267;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chr22	45931262	rs2071938	C	T	3269.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	45954029	rs2097484	G	A	1981.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	45961213	rs1118	C	T	1551.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	45961904	rs1985671	G	T	367.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.52;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	46345864	.	G	A	2333.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;ClippingRankSum=0.000;DP=655;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.59;ReadPosRankSum=2.018;SOR=0.718;set=HC	GT:AD:AF:DP	0/1:488,162:0.25:650
chr22	46447795	rs141796966	T	TA	570.37	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:6,33:0.85:39
chr22	46449891	rs12159707	G	A	1199.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	46498868	rs73177017	G	A	1185.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	46505986	rs2474020	T	C	3955.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chr22	46594555	.	C	CT	86.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;ClippingRankSum=0.000;DP=59;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.18;MQRankSum=1.209;QD=3.47;ReadPosRankSum=0.082;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:14,11:0.44:25
chr22	46677607	rs130642	T	C	9840.77	.	AC=2;AF=1.00;AN=2;DB;DP=369;set=Intersection	GT:AD:AF:DP	1/1:0,367:1.00:367
chr22	46679850	rs200400952	C	CT	307.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=4.023;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=1.981;QD=3.11;ReadPosRankSum=-0.221;SOR=0.375;set=HC	GT:AD:AF:DP	0/1:65,34:0.34:99
chr22	46722400	rs140054	T	C	17373.77	.	AC=2;AF=1.00;AN=2;DB;DP=667;set=Intersection	GT:AD:AF:DP	1/1:2,664:1.00:666
chr22	46724558	rs140053	T	C	8449.77	.	AC=2;AF=1.00;AN=2;DB;DP=318;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chr22	46739096	.	C	CT	67.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;ClippingRankSum=0.000;DP=49;ExcessHet=3.0103;FS=1.315;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.44;ReadPosRankSum=0.082;SOR=0.954;set=HC	GT:AD:AF:DP	0/1:34,13:0.28:47
chr22	46761565	rs34184256	G	C	6493.77	.	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.72;SOR=0.861;set=HC	GT:AD:AF:DP	1/1:0,243:1.00:243
chr22	46762116	.	G	A	2022	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=80;MMLQ=26;MQ=58.85;NF=23;NR=1;PP=2022;QD=85.6988005228;SC=GGCGGGGAGGGAAGGTGCGGG;SbPval=0.99;Source=Platypus;TC=42;TCF=34;TCR=8;TR=24;WE=46762160;WS=46762106;set=Platypus	GT:AD:AF:DP	1/0:18,24:0.57:42
chr22	46762126	.	GGCA	G	2963	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=3;HapScore=2;MGOF=80;MMLQ=23;MQ=59.29;NF=19;NR=2;PP=2963;QD=20;SC=GAAGGTGCGGGGCAGGGAGGG;SbPval=0.7;Source=Platypus;TC=26;TCF=23;TCR=3;TR=21;WE=46762160;WS=46762106;set=Platypus	GT:AD:AF:DP	1/0:5,21:0.81:26
chr22	46762146	.	GT	G	2948	.	AC=1;AF=0.500;AN=2;BRF=0.37;FR=0.5000;HP=2;HapScore=2;MGOF=80;MMLQ=23;MQ=60.36;NF=25;NR=9;PP=2948;QD=20;SC=GAAGTTGCGGGTGGGAAGAAG;SbPval=0.62;Source=Platypus;TC=43;TCF=31;TCR=12;TR=34;WE=46762160;WS=46762106;set=Platypus	GT:AD:AF:DP	1/0:9,34:0.79:43
chr22	46762152	.	A	AGAAAGGTGGGGGGGAGGAGAGGTGCACGGGGGGAGGAGAGGTGCACGGGGGGAGGAAAGGTGCGGGGGGAGGAAAGGTGCGGGGGGAGGAAAGGTGCGGGGGGAG	2972.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.74;MQRankSum=-0.000;QD=495.46;ReadPosRankSum=1.834;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:2,4:0.67:6
chr22	46762360	rs56325154	G	A	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=219;set=Intersection	GT:AD:AF:DP	1/1:0,217:1.00:217
chr22	46765181	rs11273699	G	GTCAGGTCGCCGAC	14528.73	.	AC=2;AF=1.00;AN=2;DB;DP=368;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chr22	46769005	rs6008779	T	C	2171.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,78:1.00:78
chr22	46858687	rs5768788	G	A	3950.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chr22	46859003	rs3788696	G	C	2157.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	46929359	rs5767248	C	G	572.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	46929692	rs4823561	A	G	3819.77	.	AC=2;AF=1.00;AN=2;DB;DP=142;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	46930107	rs8141744	C	T	5113.77	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,191:1.00:191
chr22	46931077	rs4823850	G	C	2466.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	46931793	rs1009154	G	C	5331.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.93;SOR=0.988;set=HC	GT:AD:AF:DP	1/1:0,198:1.00:198
chr22	46931838	rs1009155	G	A	6017.77	.	AC=2;AF=1.00;AN=2;DB;DP=228;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chr22	47058992	rs2542040	T	C	1694.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chr22	47134147	rs3747262	G	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.56;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	47185265	rs801606	G	T	2135.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	47274638	rs131869	C	T	740.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	47307828	rs34153333	A	AC	451.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=32.27;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	47311404	rs738935	A	T	1344.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	47857537	rs130877	T	C	3303.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	47857551	rs130878	T	G	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.47;SOR=0.746;set=HC	GT:AD:AF:DP	1/1:0,76:1.00:76
chr22	47857576	rs130879	A	G	3546.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=38.55;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	47857657	.	TAA	T	95.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.165;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.59;ReadPosRankSum=-0.129;SOR=0.794;set=HC	GT:AD:AF:DP	0/1:26,11:0.30:37
chr22	47857658	rs130880	A	T	303.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.259;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.44;ReadPosRankSum=-0.313;SOR=0.641;set=HC	GT:AD:AF:DP	0/1:13,23:0.64:36
chr22	47857659	rs130881	A	T	251.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.459;ClippingRankSum=0.000;DB;DP=41;ExcessHet=3.0103;FS=1.596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.39;ReadPosRankSum=-1.365;SOR=0.397;set=HC	GT:AD:AF:DP	0/1:11,19:0.63:30
chr22	48023297	rs12053799	A	G	2851.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	48024982	rs5845801	C	CA	832.73	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chr22	48940553	rs4823540	T	C	3137.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chr22	48940644	rs9615919	C	T	2190.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=1.075;set=HC	GT:AD:AF:DP	1/1:0,84:1.00:84
chr22	48942566	rs739155	G	A	734.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	49042316	rs9617407	T	C	811.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chr22	49103380	rs130147	A	G	415.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	49103396	rs5771990	G	A	741.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	49103660	rs132234	T	C	1641.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	49176220	rs6010527	C	T	2480.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chr22	49667985	rs7289562	G	A	1056.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	49668188	rs2688112	T	C	131.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	49834624	rs11705513	A	G	887.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	49834747	rs1016809	C	T	6652.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	49937236	rs28546641	C	T	975.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chr22	50018638	rs41308345	C	T	1249.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chr22	50277835	rs910796	T	C	3682.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chr22	50277883	rs910797	A	G	4564.77	.	AC=2;AF=1.00;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	1/1:0,177:1.00:177
chr22	50278438	rs910798	A	G	5295.77	.	AC=2;AF=1.00;AN=2;DB;DP=204;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chr22	50278568	rs910799	A	G	2614.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	50278642	rs910800	C	T	2376.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	50280136	rs5770755	T	C	4219.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chr22	50356274	rs28645887	C	T	808.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	50356302	rs28691713	C	T	1284.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	50356555	rs4078443	T	C	2702.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chr22	50356693	rs4077129	T	C	2334.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	50356850	rs1801645	C	T	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	50435480	rs5771069	A	G	1623.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	50436846	rs79102851	G	GTCC	2237.73	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chr22	50439430	rs137845	A	G	763.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chr22	50439755	rs137846	G	GCA	544.73	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	50468907	rs738333	C	G	817.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	50471620	rs5845912	AC	A	2598.73	.	AC=2;AF=1.00;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	50479856	rs9617137	A	C	595.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chr22	50480108	rs9628315	C	T	2581.77	.	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.08;SOR=0.842;set=HC	GT:AD:AF:DP	1/1:0,99:1.00:99
chr22	50483850	rs8138121	T	C	3198.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chr22	50483889	rs8137790	A	G	1807.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	50483926	rs8138277	T	C	1040.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chr22	50485793	rs137906	T	C	1376.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chr22	50487567	rs137911	T	C	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	50488804	.	CT	C	41	.	AC=2;AF=1.00;AN=2;BRF=0.08;FR=1.0000;HP=15;HapScore=2;MGOF=35;MMLQ=24;MQ=57.57;NF=0;NR=4;PP=41;QD=11.0;SC=CCAATATGTCCTTTTTTTTTT;SbPval=1.0;Source=Platypus;TC=6;TCF=0;TCR=6;TR=4;WE=50488812;WS=50488794;set=Platypus	GT:AD:AF:DP	1/1:2,4:0.67:6
chr22	50512617	rs2038048	C	T	2217.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.79;SOR=0.947;set=HC	GT:AD:AF:DP	1/1:0,86:1.00:86
chr22	50515677	rs6010166	C	T	583.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	50518723	rs79301	A	G	2421.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chr22	50523433	rs137930	T	C	495.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	50546788	rs138215	G	C	4916.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.13;SOR=1.009;set=HC	GT:AD:AF:DP	1/1:0,114:1.00:114
chr22	50546797	rs138216	T	C	4827.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.70;SOR=0.936;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	50547247	rs138217	A	G	1417.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chr22	50555486	rs126241	G	C	234.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	50555619	rs138222	C	T	1613.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.83;SOR=0.787;set=HC	GT:AD:AF:DP	1/1:0,65:1.00:65
chr22	50564413	rs138242	A	G	356.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chr22	50564750	rs138243	C	A	2604.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=0.859;set=HC	GT:AD:AF:DP	1/1:0,102:1.00:102
chr22	50587979	rs138270	T	G	1266.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.85;SOR=1.112;set=HC	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	50588131	rs138271	C	T	1205.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chr22	50598296	rs17781047	G	A	696.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50616656	rs7286904	T	C	1301.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chr22	50616806	rs5771206	A	G	670.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.83;SOR=0.941;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50631907	rs148680758	G	A	2932.77	.	AC=2;AF=1.00;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	1/1:0,109:1.00:109
chr22	50635627	rs5771095	C	T	1140.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chr22	50639367	.	A	C	37	.	AC=2;AF=1.00;AN=2;BRF=0.33;FR=0.9998;HP=9;HapScore=2;MGOF=64;MMLQ=29;MQ=60.0;NF=1;NR=1;PP=37;QD=35.8856062736;SC=CCCTCCCCCCACCCGCCCCAC;SbPval=0.74;Source=Platypus;TC=2;TCF=1;TCR=1;TR=2;WE=50639375;WS=50639364;set=Platypus	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	50639473	rs5771225	T	C	283.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.65;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chr22	50639528	rs5771226	T	C	370.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	50639636	rs6010201	C	G	189.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chr22	50639778	rs3747942	T	C	233.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	50639965	rs2272846	C	A	579.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	50644969	rs2294399	G	A	1146.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	50646859	rs58098510	CA	C	247.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.091;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.45;MQRankSum=0.000;QD=12.39;ReadPosRankSum=0.099;SOR=1.802;set=HC	GT:AD:AF:DP	1/1:2,18:0.90:20
chr22	50646936	rs5771102	G	C	1575.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	50654064	rs71750910	TGGGGGG	T	186.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	50654428	rs2294402	T	G	446.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=24.82;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chr22	50655098	rs2272851	A	G	848.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	50656096	rs2038050	A	G	6440.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,251:1.00:251
chr22	50657010	rs4838864	C	G	4943.77	.	AC=2;AF=1.00;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	1/1:0,188:1.00:188
chr22	50658053	rs6537642	A	G	2455.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chr22	50658274	rs2272854	C	G	5511.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chr22	50658424	rs11703226	T	C	4665.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chr22	50658501	rs9617119	A	G	3099.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	50658570	rs17248273	A	G	3380.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chr22	50664612	rs4838865	A	G	7006.77	.	AC=2;AF=1.00;AN=2;DB;DP=262;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chr22	50678571	rs5771109	T	C	285.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chr22	50682046	.	C	CAAAA	555.06	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.902;ClippingRankSum=-0.000;DP=19;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-0.000;QD=46.26;ReadPosRankSum=-0.608;SOR=2.303;set=HC	GT:AD:AF:DP	0/1:4,8:0.67:12
chr22	50682064	rs57495517	G	A	363.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.943;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.693;QD=18.19;ReadPosRankSum=-1.772;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:5,15:0.75:20
chr22	50682865	rs5771270	G	A	1848.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	50684296	rs13058062	T	C	2868.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	50685508	rs4838866	A	G	907.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chr22	50686371	rs34402301	C	T	4852.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,182:1.00:182
chr22	50687655	rs3830749	A	AG	645.73	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chr22	50688235	rs738334	T	C	1014.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	50688348	rs1555048	A	G	2080.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chr22	50689030	rs909688	A	G	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	50693479	rs5771281	A	G	1795.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chr22	50693521	rs5771282	C	T	4190.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.05;SOR=1.389;set=HC	GT:AD:AF:DP	1/1:0,91:1.00:91
chr22	50693534	rs6010218	A	G	4876.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.01;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,106:1.00:106
chr22	50693538	rs6010219	G	A	5125.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.77;SOR=1.262;set=HC	GT:AD:AF:DP	1/1:0,112:1.00:112
chr22	50693554	rs6010220	A	G	5718.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chr22	50694297	rs1129880	A	G	3084.77	.	AC=2;AF=1.00;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chr22	50695270	rs5771284	A	C	1142.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chr22	50696662	rs73187284	C	T	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chr22	50699487	rs2272856	G	C	1289.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chr22	50699668	rs2272857	A	G	3329.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chr22	50703560	rs41283473	G	A	2542.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;MQ=60.23;set=Intersection	GT:AD:AF:DP	1/1:0,94:1.00:94
chr22	50703572	rs10626765	C	CAG	3553.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	50704661	rs2076139	T	C	2638.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.13;SOR=0.751;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chr22	50705059	rs742185	A	G	11807.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,440:1.00:440
chr22	50705466	rs760748	A	G	6166.77	.	AC=2;AF=1.00;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chr22	50706381	rs36083586	G	A	2103.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.35;SOR=0.766;set=HC	GT:AD:AF:DP	1/1:0,83:1.00:83
chr22	50708731	rs9617050	A	G	1976.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chr22	50708815	.	AGGC	A	143	.	AC=2;AF=1.00;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chr22	50713866	rs1042979	G	C	2197.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.716;set=HC	GT:AD:AF:DP	1/1:0,87:1.00:87
chr22	50714289	rs5771118	T	C	4231.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chr22	50714491	rs6010224	A	C	480.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chr22	50715029	rs5771119	T	C	2529.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chr22	50716167	rs1127000	G	A	4177.77	.	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.78;SOR=0.719;set=HC	GT:AD:AF:DP	1/1:0,156:1.00:156
chr22	50717129	rs28718510	T	G	1646.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chr22	50717547	rs28633213	T	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chr22	50718397	rs28611220	A	G	3027.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	50719165	rs28540713	T	C	1920.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chr22	50719251	rs11547734	A	G	2943.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	50722134	rs11547731	T	C	6451.77	.	AC=2;AF=1.00;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chr22	50722167	rs28470336	T	C	5611.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chr22	50724172	.	A	AC	302	.	AC=1;AF=0.500;AN=2;BRF=0.3;FR=0.5568;HP=5;HapScore=2;MGOF=31;MMLQ=23;MQ=53.79;NF=5;NR=3;PP=302;QD=42.0;SC=ACCGGCCGGCACCCCTCCCTC;SbPval=0.75;Source=Platypus;TC=9;TCF=5;TCR=4;TR=8;WE=50724180;WS=50724162;set=Platypus	GT:AD:AF:DP	1/0:1,8:0.89:9
chr22	50724190	rs28604596	G	T	42.74	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	50751529	rs67248662	G	C	2691.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chr22	50752150	rs68178377	C	T	6218.77	.	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.79;SOR=0.874;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chr22	50752169	rs73891220	G	A	6812.77	.	AC=2;AF=1.00;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chr22	50753334	rs73439311	G	A	1773.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	50753973	rs62241228	T	C	1070.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chr22	50754052	rs71964200	TACTC	T	4777.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chr22	50754363	rs35812349	A	G	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chr22	50754466	rs62241230	C	T	1786.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chr22	50754648	rs11553141	T	C	3245.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chr22	50757470	rs67488807	T	C	2548.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	50757541	rs62241233	T	C	622.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50853132	rs60172550	TC	T	682.73	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	50853134	rs115621755	C	T	691.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chr22	50854317	rs6520165	T	C	54.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.09;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	50857140	rs7293044	G	A	151.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chr22	50860565	rs9616844	G	A	1130.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=3.528;set=HC	GT:AD:AF:DP	1/1:0,25:1.00:25
chr22	50860573	rs12163227	T	C	1311.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.23;SOR=2.910;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chr22	50860583	rs12163230	T	C	1395.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.30;SOR=2.517;set=HC	GT:AD:AF:DP	1/1:0,33:1.00:33
chr22	50870620	rs2076712	G	T	2337.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.291;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=3.102;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=24.35;ReadPosRankSum=-0.483;SOR=0.323;set=HC	GT:AD:AF:DP	1/1:1,95:0.99:96
chr22	50876077	rs9306550	T	C	2388.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chr22	50876235	rs5770779	T	C	5309.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chr22	50876357	rs5770890	C	G	4414.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chr22	50876755	rs2070273	C	T	1067.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chr22	50877166	rs4824131	G	C	1629.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,64:1.00:64
chr22	50882752	.	C	CT	490.87	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.526;ClippingRankSum=0.000;DP=62;ExcessHet=3.0103;FS=4.947;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=0.864;QD=11.69;ReadPosRankSum=0.021;SOR=2.262;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chr22	50885775	rs1053744	A	G	7558.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:2,301:0.99:303
chr22	50885893	rs56853707	CCA	C	6392.73	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chr22	50886944	rs74598385	G	A	9847.77	.	AC=2;AF=1.00;AN=2;DB;DP=372;set=Intersection	GT:AD:AF:DP	1/1:0,371:1.00:371
chr22	50895020	rs5771001	C	T	1569.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	50898026	rs58335489	G	A	1461.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chr22	50898619	rs2073278	G	A	6655.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,253:1.00:253
chr22	50899755	rs373899699	AGG	A,AG	756.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=26.09;SOR=1.071;set=HC	GT:AD:AF:DP	1/2:0,8,21:0.28,0.72:29
chr22	50901009	rs5771037	C	T	3885.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chr22	50901534	rs5771039	A	G	1602.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chr22	50902751	rs5771041	C	T	1716.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	50903221	rs2076714	C	T	2937.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chr22	50913429	rs4824154	T	C	453.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.88;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chr22	50925672	rs2232878	T	C	1739.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	50941985	rs6009975	T	C	1587.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chr22	50942121	rs13056405	C	T	2321.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.38;SOR=5.311;set=HC	GT:AD:AF:DP	1/1:0,74:1.00:74
chr22	50942709	.	C	CCT	509	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=0.9998;HP=5;HapScore=3;MGOF=29;MMLQ=22;MQ=54.14;NF=11;NR=6;PP=509;QD=31.5294117647;SC=CCACACCCCCCGGTGCCCGGC;SbPval=0.76;Source=Platypus;TC=19;TCF=11;TCR=8;TR=17;WE=50942717;WS=50942699;set=Platypus	GT:AD:AF:DP	1/1:2,17:0.89:19
chr22	50942761	rs60021445	A	G	1680.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chr22	50943004	rs762671	C	A	4844.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.04;SOR=0.976;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chr22	50943010	rs762670	G	A	4877.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.16;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chr22	50943232	rs8136495	G	A	3656.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.22;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chr22	50943423	rs762669	G	A	4383.77	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,161:1.00:161
chr22	50945256	rs131824	A	G	3395.77	.	AC=2;AF=1.00;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	50946965	rs131823	T	C	390.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chr22	51041768	.	AGAG	A	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.299;ClippingRankSum=0.000;DP=115;ExcessHet=3.0103;FS=1.222;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=2.845;QD=1.34;ReadPosRankSum=-1.252;SOR=0.487;set=HC	GT:AD:AF:DP	0/1:87,11:0.11:98
chr22	51042513	rs140511	C	CG	2297.73	.	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.62;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chr22	51048781	rs5770941	T	G	2009.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chr22	51063987	rs762674	G	C	3508.77	.	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.870;set=HC	GT:AD:AF:DP	1/1:0,133:1.00:133
chr22	51064039	rs743616	G	C	4755.77	.	AC=2;AF=1.00;AN=2;DB;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,178:1.00:178
chr22	51064141	rs762673	G	A	1950.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chr22	51064818	rs762672	T	C	617.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chr22	51065361	rs6151415	C	A	2927.77	.	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.786;set=HC	GT:AD:AF:DP	1/1:0,111:1.00:111
chr22	51113001	.	CCG	C	89.25	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.75;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chr22	51117137	rs9616914	G	A	4416.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chr22	51117580	rs9616915	T	C	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.24;SOR=0.709;set=HC	GT:AD:AF:DP	1/1:0,125:1.00:125
chr22	51133518	rs13055562	G	A	1564.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	51135545	rs9616818	T	C	116.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chr22	51137249	rs1557620	T	C	1691.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chr22	51144731	rs9968024	T	C	219.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chr22	51179000	rs2283675	C	A	778.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chr22	51183017	rs58651371	C	T	40.74	.	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=53.89;QD=20.37;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chr22	51183255	rs5771002	A	G	1552.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=45.25;QD=27.24;SOR=1.140;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chr22	51211392	rs3888396	T	C	308.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	2699898	rs60233760	C	CT	360.84	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:2,19:0.90:21
chrX	2700202	rs5939320	A	G	1874.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	2715425	rs4484858	A	G	2045.77	.	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.580;set=HC	GT:AD:AF:DP	1/1:0,78:1.00:78
chrX	2724760	rs3749988	T	C	3232.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	2726396	rs6567645	A	G	758.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	2729540	rs11439714	T	TA	1841.73	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:5,93:0.95:98
chrX	2732166	rs5939337	A	T	275.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	2732356	rs34201156	C	CT,CTT	1956.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.107;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.182;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;MQRankSum=0.000;QD=21.27;ReadPosRankSum=-1.532;SOR=0.500;set=HC	GT:AD:AF:DP	1/2:8,42,42:0.46,0.46:92
chrX	2748051	rs57068689	T	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	2748253	rs6642032	G	C	5227.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,194:1.00:194
chrX	2748292	rs6641656	C	G	3321.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	2774478	rs5939132	A	G	3180.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	2777985	rs2306734	C	T	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	2779570	rs2306735	A	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	2793725	rs72232490	CTA	C	864.73	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:35,24:0.41:59
chrX	2816082	rs5939390	T	C	2379.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	2822944	rs368046426	CT	C	50.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.11;MQRankSum=1.947;QD=0.52;ReadPosRankSum=-0.326;SOR=0.760;set=HC	GT:AD:AF:DP	0/1:76,22:0.22:98
chrX	2832742	rs211648	G	C	3780.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.07;SOR=0.823;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	2833506	rs211649	G	C	903.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	2833856	rs211650	T	C	699.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	2836037	rs211653	G	C	3826.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,142:1.00:142
chrX	2871011	rs211640	G	C	1007.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:26,44:0.63:70
chrX	2877835	rs211636	G	A	372.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:13,17:0.57:30
chrX	2877876	rs211637	T	C	123.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chrX	2878296	rs5982940	T	C	156.84	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=50.18;QD=26.14;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	2942109	rs5939407	T	C	3184.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.10;SOR=0.760;set=HC	GT:AD:AF:DP	1/1:0,122:1.00:122
chrX	2950961	rs5982634	A	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	2950998	rs5939411	C	T	1458.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	2951434	rs5939155	C	G	315.77	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	2986061	.	CT	C	30.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469;ClippingRankSum=0.000;DP=63;ExcessHet=3.0103;FS=5.483;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=0.880;SOR=0.193;set=HC	GT:AD:AF:DP	0/1:44,16:0.27:60
chrX	2999141	rs5983001	G	A	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	3002219	rs5983002	T	C	1902.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	3002687	rs5983003	A	G	1711.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	3007480	rs2290453	G	T	3946.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	3228411	rs1635233	G	A	1580.77	.	AC=1;AF=0.500;AN=2;DB;DP=113;set=Intersection	GT:AD:AF:DP	0/1:42,71:0.63:113
chrX	3228891	rs1635235	A	G	1605.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,77:0.57:136
chrX	3235724	rs1635242	C	T	636.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:16,26:0.62:42
chrX	3238014	.	C	CA	59.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=2.803;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.01;ReadPosRankSum=-0.285;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:46,13:0.22:59
chrX	3238167	rs1635245	T	G	543.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,25:0.68:37
chrX	3238733	rs1974522	G	A	3102.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:109,142:0.57:251
chrX	3239545	rs1726199	C	T	473.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:14,23:0.62:37
chrX	3240343	rs1635246	G	A	1420.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.783;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=5.152;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.93;ReadPosRankSum=-0.086;SOR=0.585;set=HC	GT:AD:AF:DP	0/1:36,66:0.65:102
chrX	3241050	rs1635247	G	A	1460.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:54,67:0.55:121
chrX	3241256	rs5983119	T	C	1190.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:45,55:0.55:100
chrX	3241284	rs1635248	A	G	1079.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:37,51:0.58:88
chrX	3241317	rs1635249	T	C	828.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:38,41:0.52:79
chrX	3241791	rs1635250	G	A	1173.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:49,50:0.51:99
chrX	3592847	rs7880937	C	T	2309.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	3631167	rs3752362	A	G	927.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.42;ReadPosRankSum=0.444;SOR=0.648;set=HC	GT:AD:AF:DP	0/1:41,48:0.54:89
chrX	3735939	rs151012322	G	A	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;ClippingRankSum=0.000;DB;DP=117;ExcessHet=3.0103;FS=4.490;MLEAC=1;MLEAF=0.500;MQ=59.77;MQRankSum=-0.279;QD=8.81;ReadPosRankSum=1.855;SOR=0.758;set=HC	GT:AD:AF:DP	0/1:64,53:0.45:117
chrX	3736489	rs1133336	C	T	3985.77	.	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.05;SOR=1.036;set=HC	GT:AD:AF:DP	1/1:0,153:1.00:153
chrX	5811807	rs61095217	A	G	301.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chrX	7890215	rs1183732	C	T	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:18,13:0.42:31
chrX	8095173	rs1037521	T	A	522.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:26,27:0.51:53
chrX	8138080	rs1058239	G	C	1068.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;MQ=59.11;set=Intersection	GT:AD:AF:DP	1/1:0,41:1.00:41
chrX	8138138	.	C	CGCTCTCCTGACTCAGTGGTTCCTCCACCTG	638.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=59.40;MQRankSum=-0.335;QD=22.03;ReadPosRankSum=-1.109;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:12,17:0.59:29
chrX	8138160	rs1058238	T	C	457.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=8.193;MLEAC=1;MLEAF=0.500;MQ=59.39;MQRankSum=0.686;QD=25.43;ReadPosRankSum=2.726;SOR=0.636;set=HC	GT:AD:AF:DP	0/1:6,12:0.67:18
chrX	8138165	rs1058237	C	G	460.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=10.532;MLEAC=1;MLEAF=0.500;MQ=59.31;MQRankSum=1.054;QD=28.80;ReadPosRankSum=2.072;SOR=0.598;set=HC	GT:AD:AF:DP	0/1:4,12:0.75:16
chrX	8138170	rs75657421	CT	GC	463.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=7.160;JOINED;MLEAC=1;MLEAF=0.500;MQ=59.15;MQRankSum=1.209;QD=35.67;ReadPosRankSum=2.546;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:3,10:0.77:13
chrX	8138182	rs41305169	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.88;QD=47.10;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	8270527	.	A	AAG	409.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;ClippingRankSum=0.000;DP=17;ExcessHet=3.0103;FS=1.913;MLEAC=1;MLEAF=0.500;MQ=59.33;MQRankSum=-1.135;QD=24.10;ReadPosRankSum=-0.049;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:7,10:0.59:17
chrX	8270569	.	AAAAGAAAGAAAGAAAGAAAGAAAG	A	651.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-2.061;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.18;MQRankSum=-1.966;QD=9.87;ReadPosRankSum=-0.276;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:43,23:0.35:66
chrX	8270575	.	A	AAG	768.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=2.268;ClippingRankSum=0.000;DP=48;ExcessHet=3.0103;FS=7.745;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=1.022;QD=16.36;ReadPosRankSum=1.833;SOR=2.166;set=HC	GT:AD:AF:DP	0/1:24,23:0.49:47
chrX	8270615	.	A	AAGAAAGAAAGAAAG	2956.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;ClippingRankSum=0.000;DP=113;ExcessHet=3.0103;FS=7.870;MLEAC=1;MLEAF=0.500;MQ=63.39;MQRankSum=0.775;QD=26.17;ReadPosRankSum=4.580;SOR=1.818;set=HC	GT:AD:AF:DP	0/1:45,68:0.60:113
chrX	8501120	rs41303179	C	A	353.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:27,18:0.40:45
chrX	8503641	rs809446	G	A	1049.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.251;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=3.747;MLEAC=1;MLEAF=0.500;MQ=59.03;MQRankSum=-0.184;QD=10.50;ReadPosRankSum=1.130;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:48,52:0.52:100
chrX	8504773	rs808120	G	T	320.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:5,13:0.72:18
chrX	8504833	rs808119	C	T	700.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:42,36:0.46:78
chrX	8653598	rs200643100	AGAAG	A	492.73	.	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.82;QD=37.90;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	8653642	rs6640215	A	G	376.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.86;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	8700168	rs1236390	A	C	75.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	8761553	rs5978272	T	G	420.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	8761625	rs2188935	G	A	1612.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	8766291	rs2018496	T	C	847.77	.	AC=2;AF=1.00;AN=2;DB;DP=33;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	9659475	.	C	CAA	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.957;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=5.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=1.478;SOR=0.075;set=HC	GT:AD:AF:DP	0/1:13,10:0.43:23
chrX	9659766	rs2301675	G	A	1851.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:82,54:0.40:136
chrX	9659767	rs3214138	T	TG	1842.73	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=140;MQ=59.96;set=Intersection	GT:AD:AF:DP	0/1:81,54:0.40:135
chrX	9659863	rs2301674	G	A	231.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:18,12:0.40:30
chrX	9661110	rs3747431	C	G	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.190;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.94;ReadPosRankSum=0.565;SOR=0.321;set=HC	GT:AD:AF:DP	0/1:15,7:0.32:22
chrX	9661165	rs3747430	G	T	1020.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:48,50:0.51:98
chrX	9665368	rs2239411	C	A	34.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=-1.263;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:28,6:0.18:34
chrX	9693652	rs3044	G	A	206.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:6,9:0.60:15
chrX	9711595	rs3788938	G	C	526.77	.	AC=1;AF=0.500;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	0/1:41,26:0.39:67
chrX	9728744	rs11095520	G	C	266.77	.	AC=1;AF=0.500;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	0/1:13,13:0.50:26
chrX	9859098	rs6640543	A	G	7942.77	.	AC=2;AF=1.00;AN=2;DB;DP=312;set=Intersection	GT:AD:AF:DP	1/1:0,312:1.00:312
chrX	9859197	rs6640544	A	G	7848.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chrX	9866085	rs2073943	T	C	129.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chrX	9866420	rs2073944	T	C	172.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,10:0.38:26
chrX	10085674	rs6530368	T	C	7359.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,286:1.00:286
chrX	10090942	rs55888301	T	G	50.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:4,3:0.43:7
chrX	10155383	rs2073939	G	A	661.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	10533042	rs5901437	TA	T	320.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.091;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.45;ReadPosRankSum=0.386;SOR=0.335;set=HC	GT:AD:AF:DP	1/1:1,27:0.96:28
chrX	11200070	.	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.121;ClippingRankSum=0.000;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.16;ReadPosRankSum=-0.186;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:13,11:0.46:24
chrX	11284153	.	CTG	C	71.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611;ClippingRankSum=-0.000;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=0.921;QD=8.97;ReadPosRankSum=-0.992;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:3,5:0.62:8
chrX	11308610	.	CA	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.83;MQRankSum=0.809;QD=3.05;ReadPosRankSum=1.420;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:5,11:0.69:16
chrX	11313027	rs946252	T	C	3922.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	11316742	rs2106416	C	T	4304.77	.	AC=1;AF=0.500;AN=2;DB;DP=487;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:266,219:0.45:485
chrX	11336936	rs5935005	G	A	127.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389;ClippingRankSum=-0.000;DB;DP=15;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.13;ReadPosRankSum=1.769;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	11682308	rs9887011	A	G	549.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:50,28:0.36:78
chrX	11786839	rs2525868	T	C	765.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	11793304	rs2240196	A	G	229.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.623;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.51;ReadPosRankSum=1.406;SOR=0.545;set=HC	GT:AD:AF:DP	0/1:35,16:0.31:51
chrX	12516777	.	C	CT	61.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;ClippingRankSum=0.000;DP=129;ExcessHet=3.0103;FS=3.322;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.51;ReadPosRankSum=2.378;SOR=1.230;set=HC	GT:AD:AF:DP	0/1:101,21:0.17:122
chrX	12628049	rs2304604	T	C	1170.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	12633034	rs6654760	T	C	965.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	12722616	rs4469660	C	G	4500.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.02;SOR=0.963;set=HC	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	12739294	rs3827468	A	G	3637.77	.	AC=1;AF=0.500;AN=2;DB;DP=353;set=Intersection	GT:AD:AF:DP	0/1:175,178:0.50:353
chrX	12809661	rs1731469	G	A	8234.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	12837558	rs5935399	C	T	214.22	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:1,9:0.90:10
chrX	12885578	rs2302267	T	G	321.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:48,20:0.29:68
chrX	12924697	rs3764879	C	G	670.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:26,31:0.54:57
chrX	12924826	rs3764880	A	G	1678.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165;ClippingRankSum=0.000;DB;DP=166;ExcessHet=3.0103;FS=0.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.11;ReadPosRankSum=-0.469;SOR=0.785;set=HC	GT:AD:AF:DP	0/1:80,86:0.52:166
chrX	12937513	rs2159377	C	T	2154.77	.	AC=1;AF=0.500;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	0/1:96,103:0.52:199
chrX	12937804	rs5744080	C	T	12696.77	.	AC=2;AF=1.00;AN=2;DB;DP=483;set=Intersection	GT:AD:AF:DP	1/1:0,480:1.00:480
chrX	12939112	rs2407992	G	C	6907.77	.	AC=2;AF=1.00;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chrX	12939406	rs5744083	A	G	3339.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;ClippingRankSum=0.000;DB;DP=402;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.35;ReadPosRankSum=0.087;SOR=0.686;set=HC	GT:AD:AF:DP	0/1:237,163:0.41:400
chrX	12939412	rs3747414	C	A	13704.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,403:1.00:403
chrX	12939928	rs2109135	T	C	3405.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	12993286	rs41311479	C	T	3515.77	.	AC=1;AF=0.500;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	0/1:118,161:0.58:279
chrX	12993511	rs115781169	C	T	400.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:40,18:0.31:58
chrX	13056654	rs4830483	T	C	401.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.63;SOR=0.804;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	13397003	rs112432165	C	T	161.77	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:27,12:0.31:39
chrX	13734539	rs2285633	T	C	354.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:20,16:0.44:36
chrX	13775752	rs36052228	AT	A	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.775;MLEAC=1;MLEAF=0.500;MQ=60.35;MQRankSum=1.344;QD=3.51;ReadPosRankSum=0.817;SOR=0.255;set=HC	GT:AD:AF:DP	0/1:16,15:0.48:31
chrX	13803960	rs5978663	C	T	608.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:55,34:0.38:89
chrX	13835096	rs3747420	T	C	125.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,7:0.30:23
chrX	13956661	rs3833419	CG	C	2248.73	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	14038772	rs56403225	C	CT	358.73	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:5,11:0.69:16
chrX	14599230	rs2074210	A	G	465.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	14599572	rs2074211	A	G	2414.77	.	AC=2;AF=1.00;AN=2;DB;DP=89;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	14622665	.	A	AGT	73	.	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.25;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	14625399	rs377596384	C	CT	253.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.10;MQRankSum=1.137;QD=4.09;ReadPosRankSum=0.751;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:38,24:0.39:62
chrX	14627144	rs2229963	T	C	938.77	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:63,50:0.44:113
chrX	14708781	rs374170979	TTC	T	70.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:22,7:0.24:29
chrX	14868806	rs2905223	A	G	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chrX	14930353	rs11400370	C	CT	92.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.143;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.73;ReadPosRankSum=0.612;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:5,7:0.58:12
chrX	14937017	rs56102478	T	C	404.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:24,21:0.47:45
chrX	15262813	.	T	TGG	2006.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	15262814	rs28628283	T	A	2015.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	15267107	rs56088357	C	G	1760.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	15301533	rs5935925	G	A	1666.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	15307563	rs5935930	T	C	893.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	15308103	rs5934230	G	T	173.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	15308163	rs6628942	A	T	483.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.88;SOR=0.914;set=HC	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	15332451	rs201659261	CT	C	385.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.19;ReadPosRankSum=-0.147;SOR=0.916;set=HC	GT:AD:AF:DP	0/1:8,34:0.81:42
chrX	15332558	rs5935944	A	G	4206.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	15333842	rs4830529	T	A	235.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	15343401	rs35222742	C	CAA	510.73	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	15353483	rs45538433	G	C	7450.77	.	AC=2;AF=1.00;AN=2;DB;DP=280;set=Intersection	GT:AD:AF:DP	1/1:0,280:1.00:280
chrX	15353689	rs4830938	T	C	2906.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	15373469	rs4531212	C	T	901.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:23,40:0.63:63
chrX	15381109	rs6629030	A	G	368.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:10,18:0.64:28
chrX	15403351	rs5935959	G	A	598.77	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:13,24:0.65:37
chrX	15498034	rs5935986	T	C	245.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.68;ReadPosRankSum=1.717;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:19,13:0.41:32
chrX	15552564	rs1877752	T	C	207.77	.	AC=1;AF=0.500;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	0/1:24,14:0.37:38
chrX	15552573	rs34879154	G	GA	95.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:17,8:0.32:25
chrX	15554602	rs28505625	T	G	340.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.469;ClippingRankSum=0.000;DB;DP=33;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.65;ReadPosRankSum=-0.794;SOR=0.628;set=HC	GT:AD:AF:DP	0/1:15,17:0.53:32
chrX	15554625	rs61657459	CA	C	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;ClippingRankSum=-0.000;DB;DP=16;ExcessHet=3.0103;FS=2.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=5.98;ReadPosRankSum=-0.446;SOR=2.093;set=HC	GT:AD:AF:DP	0/1:4,9:0.69:13
chrX	15596143	rs113691336	C	CATAAG	907.73	.	AC=1;AF=0.500;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	0/1:17,22:0.56:39
chrX	15607586	.	G	GT	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.65;ReadPosRankSum=-0.970;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:48,12:0.20:60
chrX	15607650	rs971249	T	C	198.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:13,9:0.41:22
chrX	15792527	rs4364812	T	A	803.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=47.77;QD=25.12;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	15794764	rs5980183	G	A	508.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:12,22:0.65:34
chrX	15794815	rs5936050	G	A	1537.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	15800600	rs4830548	A	G	403.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:29,21:0.42:50
chrX	15800751	rs1808	G	A	1342.77	.	AC=1;AF=0.500;AN=2;DB;DP=176;set=Intersection	GT:AD:AF:DP	0/1:106,69:0.39:175
chrX	15808795	rs4830994	T	C	587.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	15817963	rs5980192	A	G	281.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:29,17:0.37:46
chrX	15827524	rs5980193	T	G	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:32,11:0.26:43
chrX	16168467	rs4986945	T	C	1818.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:67,85:0.56:152
chrX	16168677	rs4986946	T	C	3661.77	.	AC=1;AF=0.500;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	0/1:129,165:0.56:294
chrX	16189670	rs12839379	G	A	139.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:11,7:0.39:18
chrX	16608793	rs1527805	G	A	4441.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	16709626	rs5980322	G	A	5902.77	.	AC=2;AF=1.00;AN=2;DB;DP=225;set=Intersection	GT:AD:AF:DP	1/1:0,223:1.00:223
chrX	16762002	rs4830562	A	G	1264.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	16852327	rs3747367	A	C	209.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:9,10:0.53:19
chrX	16859628	rs5924530	G	A	1094.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.791;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.48;ReadPosRankSum=1.184;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:107,62:0.37:169
chrX	16872015	rs11305571	AT	A	167.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.466;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:15,16:0.52:31
chrX	16873058	rs5924532	A	C	269.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.27;ReadPosRankSum=1.490;SOR=0.534;set=HC	GT:AD:AF:DP	0/1:25,18:0.42:43
chrX	16873108	rs150641871	GTT	G	183.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=3.536;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.18;ReadPosRankSum=-0.018;SOR=1.314;set=HC	GT:AD:AF:DP	0/1:30,14:0.32:44
chrX	16873176	rs66524293	CT	C	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.07;ReadPosRankSum=0.396;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:15,10:0.40:25
chrX	16876980	rs4828536	G	A	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:69,49:0.42:118
chrX	16887655	rs67984110	C	T	2909.77	.	AC=1;AF=0.500;AN=2;DB;DP=192;set=Intersection	GT:AD:AF:DP	0/1:60,132:0.69:192
chrX	17070688	rs933946	G	A	478.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	17080492	rs713355	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	17092152	rs1346246	G	T	3296.77	.	AC=2;AF=1.00;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	17122102	rs714070	C	T	386.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	17157148	rs1946395	T	A	498.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	17705850	rs5901624	C	CT	9495.73	.	AC=2;AF=1.00;AN=2;DB;DP=307;set=Intersection	GT:AD:AF:DP	1/1:0,302:1.00:302
chrX	17710353	rs11347866	CT	C	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.583;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.99;ReadPosRankSum=-0.802;SOR=0.765;set=HC	GT:AD:AF:DP	0/1:19,25:0.57:44
chrX	17819377	rs6527818	T	C	3404.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.81;SOR=0.741;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	18230715	rs17274127	A	C	374.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:54,23:0.30:77
chrX	18231907	rs45563640	C	T	41.80	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.45;ReadPosRankSum=-0.319;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	18582646	.	G	GAT	51.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=2.147;QD=1.99;ReadPosRankSum=-0.033;SOR=0.245;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chrX	18597869	rs4825261	C	A	308.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:10,13:0.57:23
chrX	18671795	rs56396491	AT	GA	2343.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	18725742	.	G	A	286.77	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:21,15:0.42:36
chrX	18779721	rs2269584	A	G	1166.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	18800531	rs11360277	CT	C	371.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.298;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=2.769;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.82;ReadPosRankSum=0.678;SOR=0.223;set=HC	GT:AD:AF:DP	1/1:3,26:0.90:29
chrX	18824794	rs2239437	T	G	766.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	18844012	rs2273247	G	A	1084.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	18917200	rs188626552	C	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	0/1:8,13:0.62:21
chrX	18919555	rs201339926	G	T	809.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:62,45:0.42:107
chrX	18929128	rs11291764	CT	C	787.74	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:7,54:0.89:61
chrX	18954384	rs12862285	G	A	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:21,8:0.28:29
chrX	19024426	rs368756788	TA	T	77.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;ClippingRankSum=0.000;DB;DP=100;ExcessHet=3.0103;FS=1.244;MLEAC=1;MLEAF=0.500;MQ=60.22;MQRankSum=2.728;QD=0.88;ReadPosRankSum=-0.961;SOR=0.430;set=HC	GT:AD:AF:DP	0/1:66,22:0.25:88
chrX	19041592	rs5909263	C	T	317.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.623;SOR=0.864;set=HC	GT:AD:AF:DP	0/1:29,18:0.38:47
chrX	19058405	rs6633185	C	T	338.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	19363863	rs71737866	TC	T	429.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.011;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.407;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=1.246;QD=7.41;ReadPosRankSum=0.916;SOR=0.233;set=HC	GT:AD:AF:DP	0/1:29,29:0.50:58
chrX	19478294	rs5909118	T	A	1332.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	19478336	rs61014139	C	CA	714.73	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	19482476	rs5909299	C	T	3279.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	19587403	.	G	A	161.77	.	AC=1;AF=0.500;AN=2;DP=13;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chrX	19688957	.	CA	C	393.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.206;ClippingRankSum=0.000;DP=152;ExcessHet=3.0103;FS=5.121;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.98;ReadPosRankSum=-0.848;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:81,51:0.39:132
chrX	19705688	rs140573372	C	T	723.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.300;ClippingRankSum=0.000;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.64;ReadPosRankSum=-0.655;SOR=0.665;set=HC	GT:AD:AF:DP	0/1:31,37:0.54:68
chrX	20043893	rs148501612	C	A	1654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.340;ClippingRankSum=0.000;DB;DP=242;ExcessHet=3.0103;FS=0.484;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.84;ReadPosRankSum=0.377;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:152,90:0.37:242
chrX	20211397	.	T	A	40.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=4.08;ReadPosRankSum=1.383;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:6,4:0.40:10
chrX	20284859	.	GGCGGCGGCA	G	107.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-1.068;ClippingRankSum=0.000;DP=60;ExcessHet=3.0103;FS=1.818;MLEAC=1;MLEAF=0.500;MQ=63.68;MQRankSum=-1.630;QD=2.57;ReadPosRankSum=-0.487;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:36,6:0.14:42
chrX	20284862	rs11276983	GGCGGCA	G	1122.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=1.594;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=4.063;MLEAC=1;MLEAF=0.500;MQ=63.80;MQRankSum=1.814;QD=29.55;ReadPosRankSum=0.463;SOR=1.681;set=HC	GT:AD:AF:DP	0/1:6,32:0.84:38
chrX	21444852	rs3752330	C	T	496.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:14,22:0.61:36
chrX	21516016	rs12387312	T	C	361.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.966;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.92;ReadPosRankSum=-0.297;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:9,19:0.68:28
chrX	21534509	rs3838943	A	AC	37.73	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:17,7:0.29:24
chrX	21544904	.	ATTG	A	91.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.806;ClippingRankSum=0.000;DP=73;ExcessHet=3.0103;FS=1.572;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.29;ReadPosRankSum=-2.097;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:63,8:0.11:71
chrX	21875821	.	T	TA	55.73	.	AC=1;AF=0.500;AN=2;DP=18;set=Intersection	GT:AD:AF:DP	0/1:10,6:0.38:16
chrX	21985464	rs3747276	C	T	562.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.211;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=1.714;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.57;ReadPosRankSum=-0.374;SOR=0.919;set=HC	GT:AD:AF:DP	0/1:67,34:0.34:101
chrX	21990455	rs7051872	G	C	419.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chrX	22002711	rs2239674	A	G	56.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:21,5:0.19:26
chrX	22051034	rs178710	A	G	591.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	22129512	rs4824224	C	T	2599.77	.	AC=1;AF=0.500;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	0/1:89,118:0.57:207
chrX	22230975	rs3213493	T	C	294.77	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:19,15:0.44:34
chrX	22231249	rs11416169	C	CA	542.73	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:21,19:0.47:40
chrX	22239720	rs3752433	C	T	167.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:10,9:0.47:19
chrX	22244435	.	T	TTGAA	109.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:7,4:0.36:11
chrX	22244528	rs60807057	ATT	A	579.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.562;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=8.143;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.37;ReadPosRankSum=1.556;SOR=1.893;set=HC	GT:AD:AF:DP	0/1:26,25:0.49:51
chrX	23019317	rs5925720	G	T	2037.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:91,96:0.51:187
chrX	23019346	rs5926203	G	T	2417.77	.	AC=1;AF=0.500;AN=2;DB;DP=223;set=Intersection	GT:AD:AF:DP	0/1:104,118:0.53:222
chrX	23353394	rs188580863	G	T	1398.77	.	AC=1;AF=0.500;AN=2;DB;DP=185;set=Intersection	GT:AD:AF:DP	0/1:114,71:0.38:185
chrX	23398214	rs5926304	T	C	2539.77	.	AC=1;AF=0.500;AN=2;DB;DP=188;set=Intersection	GT:AD:AF:DP	0/1:70,118:0.63:188
chrX	23682589	rs4828890	T	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chrX	23682877	rs477914	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	23682976	rs476316	A	G	194.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	23685964	rs496067	T	C	3979.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	23689636	rs513572	AT	TC	7341.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	23693084	.	AT	A	53.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.914;ClippingRankSum=0.000;DP=74;ExcessHet=3.0103;FS=2.833;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.74;ReadPosRankSum=1.414;SOR=0.283;set=HC	GT:AD:AF:DP	0/1:56,17:0.23:73
chrX	23697485	rs795493	G	A	764.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	23700473	rs552105	G	A	470.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	23700693	rs795489	A	G	1282.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.66;SOR=1.390;set=HC	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	23701662	rs2665364	G	A	216.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	23722835	rs11175	A	G	1507.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=3.501;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.67;ReadPosRankSum=-0.451;SOR=0.977;set=HC	GT:AD:AF:DP	0/1:95,79:0.45:174
chrX	23723261	rs2270142	T	C	888.77	.	AC=1;AF=0.500;AN=2;DB;DP=104;set=Intersection	GT:AD:AF:DP	0/1:58,46:0.44:104
chrX	23723554	rs580192	C	T	1612.77	.	AC=1;AF=0.500;AN=2;DB;DP=127;set=Intersection	GT:AD:AF:DP	0/1:56,71:0.56:127
chrX	23724663	rs473128	G	A	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:6,7:0.54:13
chrX	23739857	rs5970601	A	G	529.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	23740085	.	G	C	3148.77	.	AC=1;AF=0.500;AN=2;DP=251;set=Intersection	GT:AD:AF:DP	0/1:103,148:0.59:251
chrX	23740681	rs55779124	C	CAA	275.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.32;ReadPosRankSum=0.000;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:4,14:0.78:18
chrX	23761122	rs3764883	A	C	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.533;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.650;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.28;ReadPosRankSum=-0.476;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:75,58:0.44:133
chrX	23801593	rs3764885	A	G	126.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	23858452	rs8680	G	A	81.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chrX	23874521	rs150314252	T	C	556.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:37,28:0.43:65
chrX	23897003	rs5970803	C	T	597.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;ClippingRankSum=0.000;DB;DP=199;ExcessHet=3.0103;FS=0.619;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.02;ReadPosRankSum=2.399;SOR=0.623;set=HC	GT:AD:AF:DP	0/1:152,46:0.23:198
chrX	23928489	rs2707164	C	T	471.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.83;ReadPosRankSum=-0.577;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:23,25:0.52:48
chrX	23945611	rs2707144	G	T	204.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.304;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.31;ReadPosRankSum=1.911;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:12,10:0.45:22
chrX	24073761	rs36018672	C	T	4865.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	24084241	rs150782745	G	GT	1245.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=91;ExcessHet=3.0103;FS=2.054;MLEAC=2;MLEAF=1.000;MQ=59.97;MQRankSum=0.000;QD=17.06;ReadPosRankSum=-0.545;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:4,69:0.95:73
chrX	24191872	.	AT	A	105.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.265;SOR=0.740;set=HC	GT:AD:AF:DP	0/1:16,14:0.47:30
chrX	24536954	.	GCACACACACA	G	677.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=67.77;SOR=2.584;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	24580746	rs1882403	A	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:11,12:0.52:23
chrX	24593453	rs3833417	GA	G	710.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.421;QD=6.46;ReadPosRankSum=-0.205;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:57,53:0.48:110
chrX	24593513	rs3747401	T	G	498.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chrX	24597316	.	A	AAG	161.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.00;MQRankSum=1.769;QD=10.78;ReadPosRankSum=0.340;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chrX	24665273	rs1207651	G	A	177.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.156;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=7.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-1.076;SOR=1.757;set=HC	GT:AD:AF:DP	0/1:68,16:0.19:84
chrX	24665381	rs140304068	A	AC	184.19	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	24735333	rs11573326	CGCCTTTGTGT	C	715.73	.	AC=1;AF=0.500;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	0/1:12,21:0.64:33
chrX	24751958	rs4058344	T	C	972.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	24760276	rs113389943	AC	A	193.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=1.752;QD=3.28;ReadPosRankSum=0.165;SOR=0.119;set=HC	GT:AD:AF:DP	0/1:44,15:0.25:59
chrX	24766651	rs3764770	G	A	196.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:3,8:0.73:11
chrX	24833074	.	G	GT	149.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;ClippingRankSum=0.000;DP=65;ExcessHet=3.0103;FS=2.626;MLEAC=1;MLEAF=0.500;MQ=59.98;MQRankSum=1.461;QD=2.54;ReadPosRankSum=0.602;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:39,20:0.34:59
chrX	26157220	rs5944317	C	T	2844.77	.	AC=1;AF=0.500;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	0/1:119,132:0.53:251
chrX	26157792	rs5944318	C	T	1678.77	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:37,73:0.66:110
chrX	26179532	rs5943854	A	G	3305.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:103,150:0.59:253
chrX	26212255	.	C	T	1804.77	.	AC=1;AF=0.500;AN=2;DP=115;set=Intersection	GT:AD:AF:DP	0/1:36,78:0.68:114
chrX	26213219	rs5986312	T	C	2757.77	.	AC=1;AF=0.500;AN=2;DB;DP=213;set=Intersection	GT:AD:AF:DP	0/1:86,126:0.59:212
chrX	27479313	.	C	T	2062.77	.	AC=1;AF=0.500;AN=2;DP=150;set=Intersection	GT:AD:AF:DP	0/1:58,92:0.61:150
chrX	27479339	rs12842916	A	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	27765399	rs371896121	AGAG	A	321.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;ClippingRankSum=0.000;DB;DP=87;ExcessHet=3.0103;FS=2.958;MLEAC=1;MLEAF=0.500;MQ=60.25;MQRankSum=2.506;QD=6.19;ReadPosRankSum=-0.906;SOR=0.326;set=HC	GT:AD:AF:DP	0/1:39,13:0.25:52
chrX	27839572	rs1368769	T	C	568.77	.	AC=1;AF=0.500;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	0/1:64,33:0.34:97
chrX	27839617	rs12557898	G	A	957.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:79,48:0.38:127
chrX	28807345	rs12009069	G	A	135.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	28807442	rs6526806	G	A	1079.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	29417510	rs4829347	C	A	561.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	30236878	rs2529541	G	A	3629.77	.	AC=2;AF=1.00;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	1/1:0,132:1.00:132
chrX	30254361	rs2071308	G	A	1356.77	.	AC=1;AF=0.500;AN=2;DB;DP=109;set=Intersection	GT:AD:AF:DP	0/1:44,65:0.60:109
chrX	30254376	rs2071309	T	C	1280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.151;ClippingRankSum=0.000;DB;DP=106;ExcessHet=3.0103;FS=0.736;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.08;ReadPosRankSum=-0.563;SOR=0.826;set=HC	GT:AD:AF:DP	0/1:44,62:0.58:106
chrX	30254530	rs2071310	A	G	1172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=2.870;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.33;ReadPosRankSum=-0.314;SOR=0.942;set=HC	GT:AD:AF:DP	0/1:35,53:0.60:88
chrX	30261002	rs2071311	A	G	1242.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:53,53:0.50:106
chrX	30261158	rs2856733	G	C	2955.77	.	AC=1;AF=0.500;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	0/1:115,139:0.55:254
chrX	30323916	rs3788891	T	G	213.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.94;ReadPosRankSum=1.956;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:23,13:0.36:36
chrX	30326983	rs2269345	C	T	2587.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:177,127:0.42:304
chrX	30577846	rs887369	A	C	6315.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,228:1.00:228
chrX	30712796	rs5927587	G	C	395.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	30715827	rs2035432	C	T	7165.77	.	AC=2;AF=1.00;AN=2;DB;DP=276;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.15;SOR=0.816;set=HC	GT:AD:AF:DP	1/1:0,274:1.00:274
chrX	30742592	rs75486718	GA	G	824.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:2,45:0.96:47
chrX	30742691	rs6631161	T	G	2727.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=25.26;SOR=0.808;set=HC	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	30745790	rs5927596	A	T	777.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	30872602	rs5927629	A	G	5211.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.93;SOR=0.703;set=HC	GT:AD:AF:DP	1/1:0,201:1.00:201
chrX	30877477	rs137921689	C	CCA	55.25	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	30877801	rs58473340	TAAA	T	523.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;ClippingRankSum=0.000;DB;DP=44;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.78;ReadPosRankSum=-1.424;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:19,19:0.50:38
chrX	31165667	rs200534475	AAAAG	A	2716.73	.	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.33;QD=43.12;SOR=1.010;set=HC	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	31191589	rs2404496	C	T	2073.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	31200832	rs3833412	A	AT	262.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=6.744;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.60;ReadPosRankSum=0.102;SOR=1.540;set=HC	GT:AD:AF:DP	0/1:72,29:0.29:101
chrX	31224684	rs2293668	A	G	4460.77	.	AC=2;AF=1.00;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	31224881	rs2293667	G	A	1856.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	31496350	rs1800280	C	T	4424.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	31676096	rs2270672	G	A	738.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:57,38:0.40:95
chrX	31947645	.	G	A	150.77	.	AC=1;AF=0.500;AN=2;DP=26;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chrX	31986430	rs3761604	C	A	373.77	.	AC=1;AF=0.500;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	0/1:28,19:0.40:47
chrX	32305879	rs10664567	A	AAT	287.73	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chrX	32360466	rs6527184	C	A	987.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	32361033	rs7891425	C	T	917.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	32363964	rs10626188	A	AAG	220.80	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	32380996	rs1801187	C	T	1005.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:80,52:0.39:132
chrX	32459169	rs41303185	G	A	339.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	32472763	.	CT	C	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.092;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=3.576;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.33;ReadPosRankSum=2.430;SOR=1.578;set=HC	GT:AD:AF:DP	0/1:25,11:0.31:36
chrX	32614060	rs1435727	T	A	258.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:12,13:0.52:25
chrX	32659525	rs372085973	GTATA	G	143	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.75;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	33357592	rs5927163	T	C	108.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=3.033;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-3.180;SOR=0.148;set=HC	GT:AD:AF:DP	0/1:20,8:0.29:28
chrX	34149267	rs1811716	C	A	6349.77	.	AC=1;AF=0.500;AN=2;DB;DP=453;set=Intersection	GT:AD:AF:DP	0/1:167,286:0.63:453
chrX	34674970	rs5928617	C	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:45,23:0.34:68
chrX	36103466	.	C	T	2394.77	.	AC=1;AF=0.500;AN=2;DP=198;set=Intersection	GT:AD:AF:DP	0/1:83,114:0.58:197
chrX	37028127	rs73631164	A	G	4126.77	.	AC=1;AF=0.500;AN=2;DB;DP=618;set=Intersection	GT:AD:AF:DP	0/1:382,234:0.38:616
chrX	37029254	rs1995914	A	C	1666.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:59,78:0.57:137
chrX	37641484	rs7059081	C	G	894.77	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:23,37:0.62:60
chrX	37655143	.	A	ATG	280.84	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.78;ReadPosRankSum=0.227;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:4,15:0.79:19
chrX	37700012	.	C	CAA	52	.	AC=1;AF=0.500;AN=2;BRF=0.33;FR=0.5000;HP=2;HapScore=4;MGOF=35;MMLQ=28;MQ=56.24;NF=0;NR=5;PP=52;QD=11.0;SC=TATACACACACACACACACAC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=5;WE=37700022;WS=37700002;set=Platypus	GT:AD:AF:DP	1/0:0,5:1.00:5
chrX	37700014	rs5918401	C	A	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=15.17;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	37883167	rs145326096	AAAGT	A	177.73	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:2,6:0.75:8
chrX	37883303	rs34578085	G	GA	233.73	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:7,14:0.67:21
chrX	38037479	rs5918489	A	T	883.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	38079975	rs72249350	CGCA	C	5665.73	.	AC=2;AF=1.00;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	38145180	rs199896738	CTCCCCTTCCACT	C	505.73	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:30,15:0.33:45
chrX	38160433	rs11266204	T	C	30.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.967;ClippingRankSum=-0.000;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.26;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chrX	38169777	rs35587043	T	TA	784.73	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:76,47:0.38:123
chrX	38177967	rs3810691	T	C	187.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:20,11:0.35:31
chrX	38178178	.	C	T	1676.77	.	AC=1;AF=0.500;AN=2;DP=146;set=Intersection	GT:AD:AF:DP	0/1:67,78:0.54:145
chrX	38268313	rs62622415	T	G	269.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:53,18:0.25:71
chrX	38280206	rs12557315	C	T	908.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:34,41:0.55:75
chrX	38505492	rs73198486	T	C	359.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:22,17:0.44:39
chrX	38515168	rs5917614	G	T	776.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.79;SOR=1.688;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	38535174	rs4826996	A	G	2835.77	.	AC=2;AF=1.00;AN=2;DB;DP=98;set=Intersection	GT:AD:AF:DP	1/1:0,98:1.00:98
chrX	39909033	rs5963724	C	T	94.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chrX	39911657	rs5963725	C	A	886.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:93,48:0.34:141
chrX	39930433	.	G	GA	132.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=3.151;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.28;ReadPosRankSum=0.982;SOR=1.302;set=HC	GT:AD:AF:DP	0/1:18,13:0.42:31
chrX	39933339	rs5917933	A	G	3711.77	.	AC=1;AF=0.500;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	0/1:115,179:0.61:294
chrX	40456961	rs3112299	G	C	406.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:52,24:0.32:76
chrX	40460183	rs10590549	T	TAA	93.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.934;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.46;ReadPosRankSum=-0.678;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:14,7:0.33:21
chrX	40499403	rs4827221	C	T	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.13;SOR=1.329;set=HC	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	40506697	rs6610447	A	G	5183.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:0,193:1.00:193
chrX	40514322	rs11266293	G	A	1484.77	.	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.01;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,53:1.00:53
chrX	40551599	rs11292945	TA	T	200.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=1.377;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:25,24:0.49:49
chrX	40556492	rs5918029	C	G	1218.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	41010474	rs11298138	CT	C	70.87	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	41029936	.	GTA	G	991.73	.	AC=1;AF=0.500;AN=2;DP=69;set=Intersection	GT:AD:AF:DP	0/1:32,29:0.48:61
chrX	41203119	rs2275944	G	A	893.77	.	AC=1;AF=0.500;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	0/1:49,44:0.47:93
chrX	41524788	rs200400188	AATCCAAATAAAAAGTT	A	671.73	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:25,19:0.43:44
chrX	41554814	rs913602	T	C	555.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:45,26:0.37:71
chrX	41587218	rs1023065	T	C	458.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.630;ClippingRankSum=0.000;DB;DP=82;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.59;ReadPosRankSum=0.488;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:54,28:0.34:82
chrX	43599897	rs55988704	A	AT	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.081;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=1.451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.52;ReadPosRankSum=0.434;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:24,16:0.40:40
chrX	43627999	rs1799836	T	C	2300.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277;ClippingRankSum=0.000;DB;DP=253;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.20;ReadPosRankSum=0.237;SOR=0.669;set=HC	GT:AD:AF:DP	0/1:128,122:0.49:250
chrX	43741616	rs1181251	G	C	6369.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,229:1.00:229
chrX	44202890	rs5902346	G	GC	6077.73	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	44703935	rs1045031	T	C	3638.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.477;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.94;ReadPosRankSum=1.135;SOR=0.752;set=HC	GT:AD:AF:DP	0/1:88,173:0.66:261
chrX	44833826	rs112536942	T	C	364.77	.	AC=2;AF=1.00;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	44833841	rs6611055	C	A	399.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	44834045	rs200529431	C	CT	341.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:1,17:0.94:18
chrX	44897039	rs200420008	TG	T	401.73	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:11,15:0.58:26
chrX	44913052	rs5952285	T	A	389.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:8,17:0.68:25
chrX	44918243	.	C	A	85.85	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=14.31;ReadPosRankSum=-0.674;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chrX	44920068	rs3788869	A	G	634.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:16,25:0.61:41
chrX	44935924	rs10605935	CT	C	758.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;ClippingRankSum=0.000;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=16.86;ReadPosRankSum=-1.650;SOR=0.289;set=HC	GT:AD:AF:DP	1/1:1,44:0.98:45
chrX	44949284	rs5952675	A	T	174.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	44966795	rs5952682	T	C	581.77	.	AC=1;AF=0.500;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	0/1:34,28:0.45:62
chrX	44966805	rs11343829	GT	G	599.73	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:30,23:0.43:53
chrX	45011340	rs4824527	T	C	1321.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	45013523	rs72059118	CCTAT	C	54.70	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	45013558	.	ATCTATCTG	A	286	.	AC=1;AF=0.500;AN=2;BRF=0.0;FR=0.5879;HP=2;HapScore=2;MGOF=12;MMLQ=28;MQ=58.49;NF=0;NR=4;PP=286;QD=72.75;SC=CTATCTATCTATCTATCTGTC;SbPval=1.0;Source=Platypus;TC=5;TCF=0;TCR=5;TR=4;WE=45013573;WS=45013548;set=Platypus	GT:AD:AF:DP	1/0:1,4:0.80:5
chrX	45017166	rs5952693	A	C	164.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.061;ClippingRankSum=-0.000;DB;DP=14;ExcessHet=3.0103;FS=2.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=11.77;ReadPosRankSum=0.349;SOR=0.307;set=HC	GT:AD:AF:DP	0/1:6,8:0.57:14
chrX	45023327	rs73206205	G	A	1030.77	.	AC=1;AF=0.500;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	0/1:35,50:0.59:85
chrX	45050973	rs4239958	C	T	78.77	.	AC=1;AF=0.500;AN=2;DB;DP=10;set=Intersection	GT:AD:AF:DP	0/1:6,4:0.40:10
chrX	45606307	.	T	TGTGTGTGTGA	295.75	.	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.64;QD=36.97;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	45606319	.	A	AGTGT	196.73	.	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.92;QD=39.35;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	46356713	.	GT	GCCATTTACCAATTAGTATATTCCTTGTGGGGAAAAGTAGCTTGGTCTATTGGACTCGTCTCTCTTCACTCCTCTTGTCACCAGGATCTTTCCATTCAGGTCCCATTGTCTTAGCTCAGGGCT,G	3433.73	.	AC=2,0;AF=1.00,0.00;AN=2;DP=118;set=Intersection	GT:AF:DP	1/1:0.70:114
chrX	46387921	rs56160764	G	A	5050.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;MQ=59.97;set=Intersection	GT:AD:AF:DP	1/1:0,205:1.00:205
chrX	46388442	rs2003665	G	A	1433.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	46388458	rs5906232	T	G	905.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	46434614	.	C	T	752.77	.	AC=1;AF=0.500;AN=2;DP=62;set=Intersection	GT:AD:AF:DP	0/1:30,32:0.52:62
chrX	46466775	rs1883255	G	A	365.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;set=Intersection	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	46472666	rs6611276	C	T	330.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	46472826	rs3208940	G	A	969.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	46618321	rs1056846	C	G	3694.77	.	AC=2;AF=1.00;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	46737138	rs58164919	G	GGTGTGT	423.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=38.52;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,11:1.00:11
chrX	46884357	.	G	GT	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.359;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.94;ReadPosRankSum=1.415;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chrX	46893249	rs5906311	G	A	784.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	46944155	rs6611328	A	C	717.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	46949403	rs6611330	C	T	2488.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	46951004	rs5906327	G	T	359.77	.	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.67;SOR=2.147;set=HC	GT:AD:AF:DP	1/1:0,13:1.00:13
chrX	46952219	rs4480242	A	G	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	46952398	rs14312	C	T	328.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.00;ReadPosRankSum=1.753;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:28,19:0.40:47
chrX	47036113	rs375726080	GTC	G	122.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.416;ClippingRankSum=0.000;DB;DP=60;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.84;ReadPosRankSum=0.492;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:23,9:0.28:32
chrX	47057647	rs4468050	A	G	2399.77	.	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.26;SOR=0.802;set=HC	GT:AD:AF:DP	1/1:0,95:1.00:95
chrX	47061018	rs4239964	C	G	2713.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	47086347	rs6417923	G	A	4276.77	.	AC=2;AF=1.00;AN=2;DB;DP=157;set=Intersection	GT:AD:AF:DP	1/1:0,156:1.00:156
chrX	47086681	.	AC	A	40.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.488;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.48;ReadPosRankSum=1.034;SOR=0.734;set=HC	GT:AD:AF:DP	0/1:73,11:0.13:84
chrX	47087812	rs41305231	G	T	609.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	47104943	.	C	CT	129.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196;ClippingRankSum=0.000;DP=79;ExcessHet=3.0103;FS=7.147;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-0.737;SOR=0.165;set=HC	GT:AD:AF:DP	0/1:39,17:0.30:56
chrX	47229909	rs3810666	G	A	1473.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	47229935	rs3810665	T	C	2258.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,86:1.00:86
chrX	47230204	rs6608713	T	C	492.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	47269516	rs6608717	A	G	1381.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	47272965	rs147394827	G	A	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.787;ClippingRankSum=0.000;DB;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.39;ReadPosRankSum=0.160;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:35,36:0.51:71
chrX	47372920	rs3748519	C	T	43.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.319;ClippingRankSum=-0.000;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=10.95;ReadPosRankSum=1.150;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:1,3:0.75:4
chrX	47372966	rs3748518	G	T	55.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:2,4:0.67:6
chrX	47430509	rs34987183	AGT	A	198.73	.	AC=1;AF=0.500;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	0/1:31,13:0.30:44
chrX	47430611	rs377351122	GGT	G	453.73	.	AC=1;AF=0.500;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	0/1:65,28:0.30:93
chrX	47445366	rs150231209	G	A	3530.77	.	AC=1;AF=0.500;AN=2;DB;DP=276;set=Intersection	GT:AD:AF:DP	0/1:112,163:0.59:275
chrX	47487912	rs11436787	T	TG	5952.73	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	47658046	rs723119	C	T	5121.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.27;SOR=0.811;set=HC	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	47662972	rs909713	T	G	4818.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chrX	47663200	rs1207505	G	A	7802.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chrX	47663988	rs1207506	A	G	6459.77	.	AC=1;AF=0.500;AN=2;DB;DP=588;MQ=59.99;set=Intersection	GT:AD:AF:DP	0/1:268,317:0.54:585
chrX	47695547	rs1207491	T	C	3359.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,123:1.00:123
chrX	47695742	rs35084954	CT	C	6971.73	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:2,199:0.99:201
chrX	47755164	rs3949810	C	A	663.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	47757758	rs5906510	T	G	2772.77	.	AC=2;AF=1.00;AN=2;DB;DP=106;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	47842356	rs150066211	G	T	1223.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.667;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.41;ReadPosRankSum=-1.145;SOR=0.824;set=HC	GT:AD:AF:DP	0/1:70,60:0.46:130
chrX	47918205	rs501128	G	A	556.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.923;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=3.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.33;ReadPosRankSum=-1.560;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:56,32:0.36:88
chrX	47919855	rs41297342	C	T	1513.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:56,69:0.55:125
chrX	47920356	rs727079	A	G	6906.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,264:1.00:264
chrX	47927449	rs2152823	G	A	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=3.465;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.03;ReadPosRankSum=-0.586;SOR=1.057;set=HC	GT:AD:AF:DP	0/1:45,22:0.33:67
chrX	47927554	.	A	AGAAG	113.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.924;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=58.02;MQRankSum=-0.493;QD=11.37;ReadPosRankSum=-0.370;SOR=0.223;set=HC	GT:AD:AF:DP	0/1:2,8:0.80:10
chrX	48049666	rs5906557	C	T	3304.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,118:1.00:118
chrX	48053521	rs4239967	T	C	6438.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,236:1.00:236
chrX	48054740	rs4824675	C	G	8897.77	.	AC=2;AF=1.00;AN=2;DB;DP=331;set=Intersection	GT:AD:AF:DP	1/1:1,329:1.00:330
chrX	48116786	rs7886344	C	G	3373.77	.	AC=2;AF=1.00;AN=2;DB;DP=122;set=Intersection	GT:AD:AF:DP	1/1:0,121:1.00:121
chrX	48123139	rs56131009	G	A	1045.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	48158947	rs41310647	T	C	5148.77	.	AC=2;AF=1.00;AN=2;DB;DP=193;set=Intersection	GT:AD:AF:DP	1/1:2,190:0.99:192
chrX	48163105	rs4598385	A	G	14025.77	.	AC=2;AF=1.00;AN=2;DB;DP=551;set=Intersection	GT:AD:AF:DP	1/1:1,547:1.00:548
chrX	48163717	rs3901052	C	T	6280.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chrX	48163886	rs3885827	G	A	5432.77	.	AC=2;AF=1.00;AN=2;DB;DP=199;set=Intersection	GT:AD:AF:DP	1/1:0,199:1.00:199
chrX	48164138	rs5906631	A	G	2999.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	48382174	rs3048	G	T	913.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:53,46:0.46:99
chrX	48418126	rs2293948	A	G	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	0/1:103,81:0.44:184
chrX	48418659	rs235836	G	A	2059.77	.	AC=1;AF=0.500;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	0/1:149,109:0.42:258
chrX	48432791	rs2661105	T	C	686.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	48433499	rs2249583	C	G	2126.77	.	AC=1;AF=0.500;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	0/1:152,106:0.41:258
chrX	48433529	rs2249585	C	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	0/1:174,132:0.43:306
chrX	48435308	rs235830	G	A	325.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:11,13:0.54:24
chrX	48435402	rs926152	T	C	2561.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.003;ClippingRankSum=0.000;DB;DP=156;ExcessHet=3.0103;FS=2.138;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.63;ReadPosRankSum=-1.245;SOR=0.928;set=HC	GT:AD:AF:DP	0/1:87,67:0.44:154
chrX	48435405	rs926153	C	T	2536.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.338;ClippingRankSum=0.000;DB;DP=158;ExcessHet=3.0103;FS=2.107;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.26;ReadPosRankSum=-0.950;SOR=0.902;set=HC	GT:AD:AF:DP	0/1:87,69:0.44:156
chrX	48435928	rs235829	C	T	1437.77	.	AC=2;AF=1.00;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	1/1:0,52:1.00:52
chrX	48459102	rs57467079	C	G	1011.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:73,47:0.39:120
chrX	48460314	rs235842	A	G	7067.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chrX	48460625	rs235841	G	C	1947.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	48462532	.	C	CA	38.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DP=100;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.41;ReadPosRankSum=0.832;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:79,16:0.17:95
chrX	48544650	rs235423	A	G	189.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	48631645	.	CA	C	42.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.409;ClippingRankSum=0.000;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.22;ReadPosRankSum=0.434;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:24,11:0.31:35
chrX	48649426	rs139472040	A	AG	1596.73	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.30;QD=44.35;SOR=2.432;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	48649449	rs62600348	T	G	2248.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.85;SOR=2.608;set=HC	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	48649456	rs66717003	T	G	2351.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.55;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	48663743	rs55842933	G	A	1471.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:34,65:0.66:99
chrX	48675658	.	C	CA	160.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;ClippingRankSum=0.000;DP=30;ExcessHet=3.0103;FS=1.485;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=1.104;QD=5.54;ReadPosRankSum=-0.022;SOR=1.110;set=HC	GT:AD:AF:DP	0/1:14,15:0.52:29
chrX	48675926	rs5906712	C	G	107.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:16,6:0.27:22
chrX	48690416	rs6520383	G	T	168.77	.	AC=1;AF=0.500;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	0/1:9,9:0.50:18
chrX	48751471	rs1128363	A	G	1288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.859;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.08;ReadPosRankSum=-1.383;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:110,72:0.40:182
chrX	48759204	rs741932	C	T	1386.77	.	AC=1;AF=0.500;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	0/1:91,73:0.45:164
chrX	48760793	rs2239453	C	T	1697.77	.	AC=1;AF=0.500;AN=2;DB;DP=211;set=Intersection	GT:AD:AF:DP	0/1:123,88:0.42:211
chrX	48768695	rs370341804	GCA	G	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;ClippingRankSum=0.000;DB;DP=132;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.60;ReadPosRankSum=-1.932;SOR=0.753;set=HC	GT:AD:AF:DP	0/1:112,15:0.12:127
chrX	48775681	rs371733807	GAC	G	246.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;ClippingRankSum=0.000;DB;DP=104;ExcessHet=3.0103;FS=1.214;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=1.260;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:79,18:0.19:97
chrX	48838151	rs3027476	C	T	2309.77	.	AC=1;AF=0.500;AN=2;DB;DP=336;set=Intersection	GT:AD:AF:DP	0/1:207,126:0.38:333
chrX	48844368	.	G	GACACAC	358.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=6.560;MLEAC=1;MLEAF=0.500;MQ=59.67;MQRankSum=-0.474;QD=25.62;ReadPosRankSum=1.349;SOR=0.039;set=HC	GT:AD:AF:DP	0/1:4,10:0.71:14
chrX	48847497	rs11545861	T	C	3268.77	.	AC=1;AF=0.500;AN=2;DB;DP=238;set=Intersection	GT:AD:AF:DP	0/1:93,145:0.61:238
chrX	48854717	.	C	T	396.77	.	AC=1;AF=0.500;AN=2;DP=31;set=Intersection	GT:AD:AF:DP	0/1:13,18:0.58:31
chrX	48858802	rs28727466	G	A	592.77	.	AC=1;AF=0.500;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	0/1:44,27:0.38:71
chrX	48898183	rs7056903	C	G	665.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	48900900	rs4824738	T	G	1746.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	48925533	rs201793746	G	A	1381.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=2.919;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.40;ReadPosRankSum=-0.780;SOR=0.856;set=HC	GT:AD:AF:DP	0/1:74,73:0.50:147
chrX	48976301	.	TC	T	211.73	.	AC=1;AF=0.500;AN=2;DP=36;set=Intersection	GT:AD:AF:DP	0/1:24,10:0.29:34
chrX	49021256	rs5906744	A	G	7989.77	.	AC=2;AF=1.00;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	1/1:0,303:1.00:303
chrX	49021537	rs5905720	G	C	7753.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chrX	49022276	rs5953269	C	G	2626.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.08;SOR=2.262;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	49022286	rs72619037	C	G	3076.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.25;SOR=2.670;set=HC	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	49022291	.	GT	G	3264.73	.	AC=2;AF=1.00;ALERT;AN=2;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	49022293	rs75416104	C	G	3407.77	.	AC=2;AF=1.00;ALERT;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=47.33;SOR=2.802;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	49022293	.	CAA	GAG	2197	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=40;NR=11;PP=2197;QD=44.1268210757;SC=GAACGCCTGTCAAGGGAGATT;SbPval=0.61;Source=Platypus;TC=74;TCF=57;TCR=17;TR=51;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:23,51:0.69:74
chrX	49022295	rs138365388	A	G	3408.77	.	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.15;SOR=2.720;set=HC	GT:AD:AF:DP	1/1:0,79:1.00:79
chrX	49022309	rs73634213	C	A	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=46.12;SOR=1.911;set=HC	GT:AD:AF:DP	1/1:0,117:1.00:117
chrX	49022309	.	CAA	AAG	2947	.	AC=2;AF=1.00;AN=2;BRF=0.23;FR=1.0000;HP=2;HapScore=1;MGOF=2;MMLQ=28;MQ=60.0;NF=75;NR=25;PP=2947;QD=20;SC=AGATTTCTCTCAAGGTCAGGG;SbPval=0.67;Source=Platypus;TC=109;TCF=79;TCR=30;TR=100;WE=49022319;WS=49022266;set=Platypus	GT:AD:AF:DP	1/1:9,100:0.92:109
chrX	49022311	rs7880193	A	G	5395.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=42.82;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	49022700	rs4824462	T	C	1378.77	.	AC=2;AF=1.00;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	1/1:0,51:1.00:51
chrX	49032208	rs12557970	G	A	1596.77	.	AC=1;AF=0.500;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	0/1:167,90:0.35:257
chrX	49056498	rs111279175	G	C	422.77	.	AC=1;AF=0.500;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	0/1:22,21:0.49:43
chrX	49069366	rs2071316	C	T	1640.77	.	AC=2;AF=1.00;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	1/1:0,61:1.00:61
chrX	49070813	rs2071317	G	A	695.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	49071964	rs2075866	A	G	3829.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.41;SOR=0.854;set=HC	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	49077072	rs5906756	G	A	402.77	.	AC=1;AF=0.500;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	0/1:53,24:0.31:77
chrX	49077583	rs2869212	G	A	671.77	.	AC=1;AF=0.500;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	0/1:38,32:0.46:70
chrX	49081291	rs2235127	G	A	3334.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:99,156:0.61:255
chrX	49084492	rs6609854	C	T	4417.77	.	AC=1;AF=0.500;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	0/1:97,197:0.67:294
chrX	49087487	rs5905724	G	A	1580.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.514;ClippingRankSum=0.000;DB;DP=131;ExcessHet=3.0103;FS=4.224;MLEAC=1;MLEAF=0.500;MQ=59.88;MQRankSum=-1.255;QD=12.07;ReadPosRankSum=-0.170;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:58,73:0.56:131
chrX	49092313	rs71896590	ACACACG	A	136.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033;ClippingRankSum=0.000;DB;DP=32;ExcessHet=3.0103;FS=1.713;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.22;ReadPosRankSum=2.072;SOR=1.207;set=HC	GT:AD:AF:DP	0/1:13,9:0.41:22
chrX	49093528	rs2294016	T	C	7448.77	.	AC=2;AF=1.00;AN=2;DB;DP=284;set=Intersection	GT:AD:AF:DP	1/1:0,284:1.00:284
chrX	49098631	rs2294018	A	G	1946.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.595;ClippingRankSum=0.000;DB;DP=185;ExcessHet=3.0103;FS=2.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.993;SOR=0.488;set=HC	GT:AD:AF:DP	0/1:92,92:0.50:184
chrX	49103097	rs2294019	T	A	84.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;ClippingRankSum=-0.000;DB;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=7.71;ReadPosRankSum=0.723;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:6,5:0.45:11
chrX	49103224	rs2294020	G	A	696.77	.	AC=1;AF=0.500;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	0/1:34,34:0.50:68
chrX	49104815	rs2280882	T	C	366.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:28,20:0.42:48
chrX	49105610	rs2294021	T	C	1849.77	.	AC=1;AF=0.500;AN=2;DB;DP=293;set=Intersection	GT:AD:AF:DP	0/1:187,105:0.36:292
chrX	49112283	rs2232368	C	T	1786.77	.	AC=1;AF=0.500;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	0/1:108,86:0.44:194
chrX	49369711	rs3747318	A	G	626.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.622;ClippingRankSum=0.000;DB;DP=80;ExcessHet=3.0103;FS=0.847;MLEAC=1;MLEAF=0.500;MQ=59.41;MQRankSum=-2.358;QD=7.83;ReadPosRankSum=1.223;SOR=0.586;set=HC	GT:AD:AF:DP	0/1:46,34:0.42:80
chrX	49370511	rs35846904	A	AAAT	148.75	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.674;ClippingRankSum=-0.000;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=24.79;ReadPosRankSum=-0.674;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:1,5:0.83:6
chrX	49458624	.	GACAC	G	70	.	AC=1;AF=0.500;AN=2;BRF=0.19;FR=0.5000;HP=2;HapScore=1;MGOF=8;MMLQ=25;MQ=60.0;NF=2;NR=2;PP=70;QD=18.25;SC=CAATGCATGAGACACACACAC;SbPval=0.3;Source=Platypus;TC=22;TCF=16;TCR=6;TR=4;WE=49458635;WS=49458614;set=Platypus	GT:AD:AF:DP	0/1:18,4:0.18:22
chrX	49767832	rs456615	A	G	3145.77	.	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.69;SOR=1.002;set=HC	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	49767835	rs456617	A	G	3113.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.13;SOR=0.980;set=HC	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	49767904	rs149259	A	G	1354.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	49845141	.	GT	G	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.178;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:19,5:0.21:24
chrX	49962106	.	C	G	2099.77	.	AC=1;AF=0.500;AN=2;DP=199;set=Intersection	GT:AD:AF:DP	0/1:96,103:0.52:199
chrX	50054578	rs192481077	T	G	437.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=1.221;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.52;ReadPosRankSum=-1.409;SOR=0.437;set=HC	GT:AD:AF:DP	0/1:24,22:0.48:46
chrX	50056814	rs5915179	A	G	1756.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	50121146	rs11415594	A	AG	2935.73	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	50165595	rs72026364	AAC	A	213.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;ClippingRankSum=-0.000;DB;DP=27;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.40;MQRankSum=-0.000;QD=23.75;ReadPosRankSum=1.150;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	50341598	rs2295544	G	A	3021.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	50341675	rs2295543	G	C	929.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	50350674	rs3747282	T	C	987.77	.	AC=1;AF=0.500;AN=2;DB;DP=84;set=Intersection	GT:AD:AF:DP	0/1:41,42:0.51:83
chrX	50350728	rs143151534	T	TTCC	1605.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.443;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=4.129;MLEAC=1;MLEAF=0.500;MQ=60.21;MQRankSum=1.423;QD=18.89;ReadPosRankSum=-1.227;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:42,43:0.51:85
chrX	50350758	rs201922875	C	CTGCTGCTGCTGT	2262.73	.	AC=1;AF=0.500;AN=2;DB;DP=114;set=Intersection	GT:AD:AF:DP	0/1:44,55:0.56:99
chrX	51075841	rs2625875	A	G	158.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595;ClippingRankSum=0.000;DB;DP=399;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=58.76;MQRankSum=-11.076;QD=0.40;ReadPosRankSum=1.682;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:342,55:0.14:397
chrX	51075846	.	C	T	2515.77	.	AC=1;AF=0.500;AN=2;DP=382;set=Intersection	GT:AD:AF:DP	0/1:243,139:0.36:382
chrX	51239295	.	ATCCTCGAGGCAGCC	A	9699.73	.	AC=2;AF=1.00;AN=2;DP=270;set=Intersection	GT:AD:AF:DP	1/1:0,218:1.00:218
chrX	51486659	rs974285	C	T	1143.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	52682132	.	G	A	1965.77	.	AC=1;AF=0.500;AN=2;DP=163;set=Intersection	GT:AD:AF:DP	0/1:70,92:0.57:162
chrX	52825471	rs2806837	A	G	2068.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	52825546	rs2806838	C	G	4319.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=26.18;SOR=0.918;set=HC	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	52891492	rs114794367	T	C	533.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:24,26:0.52:50
chrX	52891512	rs78471253	AC	TT	1030.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.531;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.82;ReadPosRankSum=0.419;SOR=0.773;set=HC	GT:AD:AF:DP	0/1:24,28:0.54:52
chrX	52891523	rs75536354	G	T	1100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=1.027;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=19.66;ReadPosRankSum=1.477;SOR=0.874;set=HC	GT:AD:AF:DP	0/1:29,27:0.48:56
chrX	52891542	rs78672295	A	G	803.77	.	AC=1;AF=0.500;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	0/1:30,29:0.49:59
chrX	52891565	rs79831867	A	G	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:39,37:0.49:76
chrX	52891584	rs5943751	C	A,T	1709.77	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=85;set=Intersection	GT:AF:DP	1/2:0.48,0.29:85
chrX	52891619	.	GT	G	1832.73	.	AC=1;AF=0.500;AN=2;DP=133;set=Intersection	GT:AD:AF:DP	0/1:82,51:0.38:133
chrX	52891645	rs75808475	A	G	2162.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;ClippingRankSum=0.000;DB;DP=169;ExcessHet=3.0103;FS=3.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.80;ReadPosRankSum=2.046;SOR=0.593;set=HC	GT:AD:AF:DP	0/1:109,60:0.36:169
chrX	52891653	rs73206488	C	T	2237.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=2.654;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.03;ReadPosRankSum=0.674;SOR=0.685;set=HC	GT:AD:AF:DP	0/1:119,67:0.36:186
chrX	52891732	rs201414570	G	A	2660.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.155;ClippingRankSum=0.000;DB;DP=183;ExcessHet=3.0103;FS=1.884;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.54;ReadPosRankSum=1.136;SOR=0.857;set=HC	GT:AD:AF:DP	0/1:111,72:0.39:183
chrX	52891736	rs75971120	G	T	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;ClippingRankSum=0.000;DB;DP=182;ExcessHet=3.0103;FS=1.894;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.85;ReadPosRankSum=1.239;SOR=0.878;set=HC	GT:AD:AF:DP	0/1:109,73:0.40:182
chrX	52891738	rs79449844	CA	TG	2702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;ClippingRankSum=0.000;DB;DP=175;ExcessHet=3.0103;FS=2.758;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.44;ReadPosRankSum=2.047;SOR=0.944;set=HC	GT:AD:AF:DP	0/1:107,68:0.39:175
chrX	52891818	rs73488230	G	A	706.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:22,23:0.51:45
chrX	52891832	rs66491662	CT	C	515.73	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:15,15:0.50:30
chrX	52895579	.	GGT	G	1737.73	.	AC=2;AF=1.00;AN=2;DP=78;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	53111641	.	G	C	621.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.796;ClippingRankSum=0.000;DP=126;ExcessHet=3.0103;FS=2.497;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.93;ReadPosRankSum=1.299;SOR=0.482;set=HC	GT:AD:AF:DP	0/1:87,39:0.31:126
chrX	53111758	.	CCCG	C	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.04;ReadPosRankSum=2.846;SOR=0.650;set=HC	GT:AD:AF:DP	0/1:133,14:0.10:147
chrX	53222043	rs146836963	A	AC	148.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	53225751	rs1536247	A	G	1445.77	.	AC=2;AF=1.00;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	1/1:0,55:1.00:55
chrX	53228148	rs1977364	C	A	8695.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,320:1.00:320
chrX	53265835	rs2296541	T	C	1123.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	53271147	rs2274307	T	G	1187.77	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	53280421	rs7886988	G	A	891.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.23;SOR=1.418;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	53436232	rs1264008	G	T	2269.77	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	53449336	rs11462431	A	AG	701.73	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	53449568	rs1264011	G	A	2842.77	.	AC=1;AF=0.500;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	0/1:120,135:0.53:255
chrX	53453074	rs4830346	A	C	98.77	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:9,5:0.36:14
chrX	53457622	rs1264013	T	C	1667.77	.	AC=1;AF=0.500;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	0/1:57,80:0.58:137
chrX	53461359	rs1264014	G	C	1525.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:35,66:0.65:101
chrX	53563589	rs426298	A	G	1867.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	53566593	rs111723336	C	G	781.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:16,36:0.69:52
chrX	53584418	rs17276588	G	A	1272.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=1.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.92;ReadPosRankSum=1.066;SOR=0.811;set=HC	GT:AD:AF:DP	0/1:114,70:0.38:184
chrX	53601990	rs35473057	A	C	156.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	53607754	rs266786	A	C	398.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:36,21:0.37:57
chrX	53629649	.	AAT	A	211.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=3.157;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.07;ReadPosRankSum=-1.599;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:41,11:0.21:52
chrX	53641647	rs6638360	T	C	313.77	.	AC=1;AF=0.500;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	0/1:19,17:0.47:36
chrX	53652844	rs198501	G	A	897.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.301;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=0.877;MLEAC=1;MLEAF=0.500;MQ=63.74;MQRankSum=-3.713;QD=12.30;ReadPosRankSum=0.707;SOR=0.816;set=HC	GT:AD:AF:DP	0/1:32,41:0.56:73
chrX	53652852	.	T	TGCCGGG	3152.73	.	AC=2;AF=1.00;AN=2;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	53654500	rs370583659	GTA	G	331.73	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:40,19:0.32:59
chrX	53655415	.	TA	T	75.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;ClippingRankSum=0.000;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.17;ReadPosRankSum=-0.997;SOR=0.569;set=HC	GT:AD:AF:DP	0/1:46,19:0.29:65
chrX	53659047	rs6638409	C	T	924.77	.	AC=1;AF=0.500;AN=2;DB;DP=78;set=Intersection	GT:AD:AF:DP	0/1:33,44:0.57:77
chrX	54107692	rs2516098	T	C	9661.77	.	AC=2;AF=1.00;AN=2;DB;DP=358;set=Intersection	GT:AD:AF:DP	1/1:0,356:1.00:356
chrX	54117740	rs2495797	C	A	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=94;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	54161859	rs4826523	C	T	1313.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	54209387	rs2495783	A	G	1736.77	.	AC=2;AF=1.00;AN=2;DB;DP=62;set=Intersection	GT:AD:AF:DP	1/1:0,62:1.00:62
chrX	54359531	.	A	C	768.77	.	AC=1;AF=0.500;AN=2;DP=111;set=Intersection	GT:AD:AF:DP	0/1:70,41:0.37:111
chrX	54472506	rs2230265	G	A	240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.34;ReadPosRankSum=0.489;SOR=0.724;set=HC	GT:AD:AF:DP	0/1:23,15:0.39:38
chrX	54481833	rs3830137	C	G	1031.77	.	AC=1;AF=0.500;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	0/1:54,53:0.50:107
chrX	54483071	rs3833405	GT	G	298.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.50;MQRankSum=0.965;QD=9.64;ReadPosRankSum=0.425;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:7,24:0.77:31
chrX	54492350	rs2269570	A	G	514.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:19,22:0.54:41
chrX	54496989	rs2239809	A	G	3258.77	.	AC=1;AF=0.500;AN=2;DB;DP=314;set=Intersection	GT:AD:AF:DP	0/1:157,155:0.50:312
chrX	54781359	rs34779123	T	C	726.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	54800637	rs35679081	CA	C	777.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.364;ClippingRankSum=0.000;DB;DP=75;ExcessHet=3.0103;FS=1.332;MLEAC=1;MLEAF=0.500;MQ=60.58;MQRankSum=1.031;QD=11.44;ReadPosRankSum=-1.243;SOR=0.477;set=HC	GT:AD:AF:DP	1/1:10,58:0.85:68
chrX	54836361	rs1043031	A	G	2526.77	.	AC=2;AF=1.00;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	1/1:0,96:1.00:96
chrX	54836505	rs1043034	A	G	3864.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	54837340	rs1043044	C	T	1871.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	54838077	rs2071932	C	T	2752.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=0.921;set=HC	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	54838437	rs2071934	G	A	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	54840013	rs763183	C	T	2256.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	54972154	.	CGT	C	52.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=3.52;ReadPosRankSum=-0.755;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:11,4:0.27:15
chrX	55116466	rs1845444	C	G	2147.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.27;SOR=1.039;set=HC	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	55173732	rs11327722	TA	T	16856.73	.	AC=2;AF=1.00;AN=2;DB;DP=469;set=Intersection	GT:AD:AF:DP	1/1:0,465:1.00:465
chrX	55246965	rs5914272	C	T	3045.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	55247030	rs5914273	C	G	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,158:1.00:158
chrX	55248320	rs5914274	G	A	7195.77	.	AC=1;AF=0.500;AN=2;DB;DP=534;set=Intersection	GT:AD:AF:DP	0/1:190,340:0.64:530
chrX	55248376	rs5914275	A	G	1423.77	.	AC=1;AF=0.500;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	0/1:137,73:0.35:210
chrX	55249049	rs2148982	T	C	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;ClippingRankSum=0.000;DB;DP=259;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.10;ReadPosRankSum=0.738;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:189,70:0.27:259
chrX	55286887	rs3761559	G	T	1012.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:12,41:0.77:53
chrX	55287031	rs3761560	T	G	7489.77	.	AC=1;AF=0.500;AN=2;DB;DP=516;set=Intersection	GT:AD:AF:DP	0/1:165,351:0.68:516
chrX	55289593	rs2148981	C	T	3669.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	55289774	rs4826381	T	C	3917.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	55479299	rs11545211	G	A	3174.77	.	AC=1;AF=0.500;AN=2;DB;DP=178;set=Intersection	GT:AD:AF:DP	0/1:47,131:0.74:178
chrX	55514818	rs3126255	C	T	1784.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.262;ClippingRankSum=0.000;DB;DP=491;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.64;ReadPosRankSum=-0.810;SOR=0.701;set=HC	GT:AD:AF:DP	0/1:366,124:0.25:490
chrX	55651001	rs2375465	T	C	4470.77	.	AC=2;AF=1.00;AN=2;DB;DP=163;set=Intersection	GT:AD:AF:DP	1/1:0,163:1.00:163
chrX	55748820	rs1473761	A	G	638.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	55757744	rs5960480	T	G	1119.77	.	AC=2;AF=1.00;AN=2;DB;DP=39;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	55782191	rs41307631	C	T	1310.77	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:20,60:0.75:80
chrX	56291516	rs1033565	T	G	132.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:9,6:0.40:15
chrX	56295245	rs3747284	T	C	667.77	.	AC=1;AF=0.500;AN=2;DB;DP=134;set=Intersection	GT:AD:AF:DP	0/1:91,42:0.32:133
chrX	56295438	rs59394346	AAC	A	2419.73	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:150,110:0.42:260
chrX	56295958	rs200952140	ATG	A	814.73	.	AC=1;AF=0.500;AN=2;DB;DP=115;set=Intersection	GT:AD:AF:DP	0/1:40,35:0.47:75
chrX	56296488	rs12862304	G	C	217.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:29,12:0.29:41
chrX	56296780	.	A	AACACAC	285.76	.	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=61.02;QD=28.58;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10
chrX	57405163	rs4826543	T	C	5727.77	.	AC=2;AF=1.00;AN=2;DB;DP=217;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.52;SOR=0.809;set=HC	GT:AD:AF:DP	1/1:0,216:1.00:216
chrX	57458220	.	G	GTTTTTTT	666.73	.	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=62.28;QD=30.31;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	57474943	rs1821118	A	T	1912.77	.	AC=2;AF=1.00;AN=2;DB;DP=63;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	57475132	rs1367830	T	C	12126.77	.	AC=2;AF=1.00;AN=2;DB;DP=468;set=Intersection	GT:AD:AF:DP	1/1:0,464:1.00:464
chrX	57619648	rs1057328	G	T	12454.77	.	AC=2;AF=1.00;AN=2;DB;DP=441;set=Intersection	GT:AD:AF:DP	1/1:0,441:1.00:441
chrX	63412999	.	G	A	4655.77	.	AC=1;AF=0.500;AN=2;DP=315;set=Intersection	GT:AD:AF:DP	0/1:110,205:0.65:315
chrX	63580270	rs200289956	C	CA	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.339;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.78;ReadPosRankSum=-0.640;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chrX	64959509	rs41303719	A	T	1740.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.39;ReadPosRankSum=-2.211;SOR=0.810;set=HC	GT:AD:AF:DP	0/1:37,84:0.69:121
chrX	65244971	rs17315645	C	T	1016.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=2.425;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.88;ReadPosRankSum=-1.263;SOR=0.530;set=HC	GT:AD:AF:DP	0/1:193,69:0.26:262
chrX	65247409	rs9633155	T	A	699.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:9,31:0.78:40
chrX	65259893	rs41305393	C	T	1138.77	.	AC=1;AF=0.500;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	0/1:23,48:0.68:71
chrX	65382685	rs5919015	T	C	2280.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	65393658	rs5918591	A	G	7544.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chrX	65420609	rs1264215	A	G	1304.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	65478922	rs11433175	T	TA	656.73	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	65486172	rs2054180	C	T	3062.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	65819223	rs4827499	A	G	566.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	65819286	rs11379040	G	GT	1811.73	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	65822607	rs1385698	T	C	2041.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	65824986	rs1385699	C	T	3932.77	.	AC=2;AF=1.00;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	1/1:0,147:1.00:147
chrX	66765158	.	T	TGCA,TGCAGCA	547	.	AC=1,0;AF=0.500,0.00;AN=2;FR=0.5000,0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;NF=6,6;NR=26,26;PP=547,481;QD=17.1875;SC=TTGCTGCTGCTGCAGCAGCAG;SbPval=0.71;Source=Platypus;TC=63;TCF=14;TCR=49;TR=32,32;WE=66765166;WS=66765148;set=Platypus	GT:AF:DP	0/1:0.51:63
chrX	66766356	.	TGGC	T	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.712;ClippingRankSum=0.000;DP=96;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.79;MQRankSum=0.000;QD=1.07;ReadPosRankSum=0.109;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:45,6:0.12:51
chrX	66941597	rs1337076	T	G	827.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	67331930	.	CAGAG	C,CAG	1006.73	.	AC=1,1;AF=0.500,0.500;ALERT;AN=2;BaseQRankSum=-2.037;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=5.686;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.54;MQRankSum=0.415;QD=29.61;ReadPosRankSum=1.053;SOR=0.109;set=HC	GT:AD:AF:DP	1/2:3,11,20:0.32,0.59:34
chrX	67331934	rs5918812	G	C	646.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.098;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=2.997;MLEAC=1;MLEAF=0.500;MQ=60.55;MQRankSum=1.074;QD=17.02;ReadPosRankSum=0.909;SOR=0.330;set=HC	GT:AD:AF:DP	0/1:13,25:0.66:38
chrX	67412906	rs1191948	G	A	5606.77	.	AC=2;AF=1.00;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	1/1:0,204:1.00:204
chrX	67429834	rs57516402	CT	C	1126.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.586;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.63;MQRankSum=0.871;QD=13.58;ReadPosRankSum=1.122;SOR=0.960;set=HC	GT:AD:AF:DP	1/1:8,75:0.90:83
chrX	67431814	rs2225124	A	G	1448.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	67719085	rs12843249	G	T	1828.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	68066095	.	AGT	A	140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DP=135;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.26;ReadPosRankSum=0.373;SOR=0.592;set=HC	GT:AD:AF:DP	0/1:96,16:0.14:112
chrX	68066220	rs73218774	G	C	448.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:6,19:0.76:25
chrX	68381264	rs11539157	C	A	15891.77	.	AC=2;AF=1.00;AN=2;DB;DP=607;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chrX	68381787	rs5937160	C	T	7825.77	.	AC=2;AF=1.00;AN=2;DB;DP=286;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chrX	68382836	rs7067170	G	A	5471.77	.	AC=2;AF=1.00;AN=2;DB;DP=201;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chrX	68424640	.	T	TTCTC	1414.73	.	AC=2;AF=1.00;AN=2;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=62.47;QD=40.42;SOR=0.749;set=HC	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	68424753	rs5937177	G	A	3545.77	.	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.77;QD=25.69;SOR=0.722;set=HC	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	68725383	rs187723921	G	A	2481.77	.	AC=1;AF=0.500;AN=2;DB;DP=123;set=Intersection	GT:AD:AF:DP	0/1:30,93:0.76:123
chrX	68725640	rs1171942	T	C	20133.77	.	AC=2;AF=1.00;AN=2;DB;DP=749;set=Intersection	GT:AD:AF:DP	1/1:0,749:1.00:749
chrX	68890248	rs5936723	C	T	604.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	68890298	rs5980833	C	G	132.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	69080840	rs1203003	G	A	4849.77	.	AC=2;AF=1.00;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	1/1:2,185:0.99:187
chrX	69247896	rs10579679	CCT	C	625.73	.	AC=1;AF=0.500;AN=2;DB;DP=34;set=Intersection	GT:AD:AF:DP	0/1:17,17:0.50:34
chrX	69250308	rs2296765	C	T	1867.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.73;ReadPosRankSum=2.393;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:47,89:0.65:136
chrX	69261818	rs2281933	A	G	4562.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	69262423	rs2296767	T	C	1419.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	69262450	rs2296768	C	T	559.77	.	AC=1;AF=0.500;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	0/1:10,21:0.68:31
chrX	69368853	rs650028	T	C	2265.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	69459945	rs1152194	C	T	1328.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	69479172	rs148362984	C	T	5519.77	.	AC=1;AF=0.500;AN=2;DB;DP=329;set=Intersection	GT:AD:AF:DP	0/1:89,239:0.73:328
chrX	69495817	rs5936871	G	A	184.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:38,13:0.25:51
chrX	69496228	rs1572732	T	C	1808.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	69500857	rs186127204	G	C	943.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:2,37:0.95:39
chrX	69502054	rs5936549	A	G	1386.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:2,51:0.96:53
chrX	69502479	rs1626469	A	G	5141.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chrX	69504073	rs2275412	T	C	973.88	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.160;ClippingRankSum=0.000;DB;DP=54;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=18.73;ReadPosRankSum=0.778;SOR=0.529;set=HC	GT:AD:AF:DP	1/1:7,45:0.87:52
chrX	69504078	rs12556489	T	G	624.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.36;ReadPosRankSum=-2.557;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:10,45:0.82:55
chrX	69510335	rs1199470	C	T	1243.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	69572242	rs1199428	G	A	140.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	69639698	rs1886892	G	T	4735.77	.	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.74;SOR=0.807;set=HC	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	69650827	.	C	T	154.77	.	AC=1;AF=0.500;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	0/1:29,10:0.26:39
chrX	69652762	rs2296542	A	G	4867.77	.	AC=2;AF=1.00;AN=2;DB;DP=182;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	69713176	.	G	GT	47.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.512;ClippingRankSum=0.000;DP=179;ExcessHet=3.0103;FS=1.669;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=3.128;QD=0.27;ReadPosRankSum=-2.482;SOR=0.953;set=HC	GT:AD:AF:DP	0/1:146,29:0.17:175
chrX	69749852	rs1536250	AT	GA	5044.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;JOINED;set=Intersection	GT:AD:AF:DP	1/1:0,114:1.00:114
chrX	69774517	rs4844240	A	T	5155.77	.	AC=2;AF=1.00;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	69844797	rs1325094	G	A	1596.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	69898742	rs55853716	GA	G	213.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.350;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.87;ReadPosRankSum=0.716;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:2,16:0.89:18
chrX	69898849	.	T	C	59.77	.	AC=1;AF=0.500;AN=2;DP=15;set=Intersection	GT:AD:AF:DP	0/1:10,5:0.33:15
chrX	69964084	rs5902674	G	GA	190.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338;ClippingRankSum=0.000;DB;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=61.71;MQRankSum=1.583;QD=10.60;ReadPosRankSum=1.026;SOR=0.343;set=HC	GT:AD:AF:DP	0/1:5,13:0.72:18
chrX	69964091	.	A	AT	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;ClippingRankSum=0.000;DP=20;ExcessHet=3.0103;FS=2.112;MLEAC=1;MLEAF=0.500;MQ=62.13;MQRankSum=-1.298;QD=1.76;ReadPosRankSum=-1.533;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:13,5:0.28:18
chrX	70093038	rs5937008	C	T	3440.77	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	70146034	rs41310635	A	G	391.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.80;ReadPosRankSum=0.164;SOR=0.590;set=HC	GT:AD:AF:DP	0/1:77,26:0.25:103
chrX	70146398	rs4360450	A	G	2829.77	.	AC=2;AF=1.00;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	1/1:0,108:1.00:108
chrX	70146475	rs6525447	G	C	165.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.802;ClippingRankSum=0.000;DB;DP=77;ExcessHet=3.0103;FS=4.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=-0.920;SOR=1.286;set=HC	GT:AD:AF:DP	0/1:62,15:0.19:77
chrX	70148071	rs140628718	G	A	706.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299;ClippingRankSum=0.000;DB;DP=103;ExcessHet=3.0103;FS=3.825;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.86;ReadPosRankSum=-2.249;SOR=0.404;set=HC	GT:AD:AF:DP	0/1:64,39:0.38:103
chrX	70148927	rs5936605	T	A	4059.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	70149360	rs5936606	G	A	2694.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.10;QD=24.50;SOR=0.888;set=HC	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	70149404	rs5936607	C	T	336.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;ClippingRankSum=0.000;DB;DP=165;ExcessHet=3.0103;FS=1.620;MLEAC=1;MLEAF=0.500;MQ=60.07;MQRankSum=-0.475;QD=2.04;ReadPosRankSum=0.746;SOR=0.877;set=HC	GT:AD:AF:DP	0/1:133,32:0.19:165
chrX	70282696	rs34211894	A	G	2684.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	70321631	rs5980742	T	G	5028.77	.	AC=1;AF=0.500;AN=2;DB;DP=299;set=Intersection	GT:AD:AF:DP	0/1:77,222:0.74:299
chrX	70352617	.	C	CCTCTT	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;ClippingRankSum=0.000;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.96;MQRankSum=3.208;QD=9.49;ReadPosRankSum=-0.473;SOR=0.713;set=HC	GT:AD:AF:DP	0/1:28,12:0.30:40
chrX	70469182	rs2341539	G	A	6703.77	.	AC=2;AF=1.00;AN=2;DB;DP=247;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chrX	70609368	rs151185299	T	TA	76.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;ClippingRankSum=0.000;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=0.588;SOR=0.699;set=HC	GT:AD:AF:DP	0/1:45,13:0.22:58
chrX	70617443	rs5980760	A	G	933.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	70626766	.	A	AT	66.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.059;ClippingRankSum=0.000;DP=82;ExcessHet=3.0103;FS=3.491;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.28;ReadPosRankSum=0.051;SOR=0.243;set=HC	GT:AD:AF:DP	0/1:37,15:0.29:52
chrX	70774984	.	T	TTG	118.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.778;ClippingRankSum=0.000;DP=25;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQRankSum=-1.123;QD=5.94;ReadPosRankSum=1.274;SOR=0.340;set=HC	GT:AD:AF:DP	0/1:12,8:0.40:20
chrX	71349753	rs12397326	G	A	7923.77	.	AC=2;AF=1.00;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	1/1:0,287:1.00:287
chrX	71349774	rs12393722	T	C	10967.77	.	AC=2;AF=1.00;AN=2;DB;DP=399;set=Intersection	GT:AD:AF:DP	1/1:0,397:1.00:397
chrX	71351443	rs62614085	A	G	2573.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	71352187	rs7471996	C	G	688.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	71357093	rs6625949	G	A	2493.77	.	AC=2;AF=1.00;AN=2;DB;DP=87;set=Intersection	GT:AD:AF:DP	1/1:0,87:1.00:87
chrX	71357160	rs6625950	G	T	954.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	71360204	rs148426364	A	G	3680.77	.	AC=1;AF=0.500;AN=2;DB;DP=250;set=Intersection	GT:AD:AF:DP	0/1:78,170:0.69:248
chrX	71363415	rs6624597	C	T	4387.77	.	AC=2;AF=1.00;AN=2;DB;DP=166;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	71364479	rs11094247	A	C	5586.77	.	AC=2;AF=1.00;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	1/1:1,203:1.00:204
chrX	71379702	rs7884806	T	C	7254.77	.	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.38;SOR=0.857;set=HC	GT:AD:AF:DP	1/1:0,275:1.00:275
chrX	71379853	rs7880917	C	T	3853.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	71380152	rs7881332	C	T	1906.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	71401607	rs6525589	G	A	871.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=43.59;SOR=2.531;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	71401614	rs7058353	C	A	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=41.85;SOR=1.931;set=HC	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	71493691	rs7580	C	T	7697.77	.	AC=2;AF=1.00;AN=2;DB;DP=273;set=Intersection	GT:AD:AF:DP	1/1:0,272:1.00:272
chrX	71495344	rs3827426	C	T	7801.77	.	AC=2;AF=1.00;AN=2;DB;DP=294;set=Intersection	GT:AD:AF:DP	1/1:0,293:1.00:293
chrX	71495388	rs34563981	T	TCTA	16002.73	.	AC=2;AF=1.00;AN=2;DB;DP=367;set=Intersection	GT:AD:AF:DP	1/1:0,354:1.00:354
chrX	71495869	rs3747303	A	G	1841.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,70:1.00:70
chrX	71518799	rs5958780	G	T	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=236;set=Intersection	GT:AD:AF:DP	1/1:0,235:1.00:235
chrX	71521867	rs3012627	G	C	6304.77	.	AC=2;AF=1.00;AN=2;DB;DP=214;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chrX	71549512	rs660392	G	C	5323.77	.	AC=2;AF=1.00;AN=2;DB;DP=198;set=Intersection	GT:AD:AF:DP	1/1:0,198:1.00:198
chrX	71791975	rs3830710	TA	T	146.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.770;ClippingRankSum=0.000;DB;DP=249;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.76;ReadPosRankSum=1.483;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:150,43:0.22:193
chrX	71813191	rs200569284	C	CT	406.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.808;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=2.241;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.33;ReadPosRankSum=-0.783;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:5,28:0.85:33
chrX	71933512	.	TCA	T	4403.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.449;ClippingRankSum=0.000;DP=418;ExcessHet=3.0103;FS=1.765;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.89;ReadPosRankSum=1.372;SOR=0.871;set=HC	GT:AD:AF:DP	0/1:79,238:0.75:317
chrX	72223371	.	A	G	377.77	.	AC=2;AF=1.00;AN=2;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	72433663	rs369450592	GTCC	G	229.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DB;DP=312;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.24;MQRankSum=7.934;QD=0.84;ReadPosRankSum=-1.815;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:245,27:0.10:272
chrX	72666985	rs41303721	A	C	1199.77	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:22,51:0.70:73
chrX	73042316	rs16992436	T	C	2549.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:42,110:0.72:152
chrX	73042607	rs41306111	C	T	2134.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:31,94:0.75:125
chrX	73043144	rs375977945	CT	C	297.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=7.228;MLEAC=1;MLEAF=0.500;MQ=60.46;MQRankSum=1.086;QD=8.51;ReadPosRankSum=-0.644;SOR=0.093;set=HC	GT:AD:AF:DP	0/1:8,27:0.77:35
chrX	73043817	rs1620574	T	C	4251.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	73044970	rs41303715	T	A	4813.77	.	AC=1;AF=0.500;AN=2;DB;DP=289;set=Intersection	GT:AD:AF:DP	0/1:75,214:0.74:289
chrX	73045740	rs1794213	A	C	947.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.419;ClippingRankSum=0.000;DB;DP=287;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.33;ReadPosRankSum=-1.033;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:217,68:0.24:285
chrX	73046557	rs16992443	G	T	2495.77	.	AC=1;AF=0.500;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	0/1:49,110:0.69:159
chrX	73062694	rs41310673	A	T	2627.77	.	AC=1;AF=0.500;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	0/1:32,112:0.78:144
chrX	73064935	rs45483698	C	T	4107.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:50,179:0.78:229
chrX	73066891	rs6527	C	A	3366.77	.	AC=1;AF=0.500;AN=2;DB;DP=222;set=Intersection	GT:AD:AF:DP	0/1:72,148:0.67:220
chrX	73071141	rs41305409	C	G	4058.77	.	AC=1;AF=0.500;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	0/1:139,194:0.58:333
chrX	73071940	.	TA	T	95.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.590;ClippingRankSum=0.000;DP=239;ExcessHet=3.0103;FS=2.303;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.44;ReadPosRankSum=0.525;SOR=0.707;set=HC	GT:AD:AF:DP	0/1:179,41:0.19:220
chrX	73641405	.	GCAGCAGAAACAAGTAC	G	1982.73	.	AC=1;AF=0.500;AN=2;DP=112;set=Intersection	GT:AD:AF:DP	0/1:55,52:0.49:107
chrX	73641569	rs6647476	T	C	2929.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:5,111:0.96:116
chrX	73749319	rs5937843	T	G	1031.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	74332585	rs4148838	G	GT	570.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.903;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.29;ReadPosRankSum=-1.430;SOR=1.542;set=HC	GT:AD:AF:DP	1/1:3,30:0.91:33
chrX	74375871	rs1039123	G	C	4746.77	.	AC=2;AF=1.00;AN=2;DB;DP=179;set=Intersection	GT:AD:AF:DP	1/1:0,179:1.00:179
chrX	74376420	rs5981325	C	T	4796.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,170:1.00:170
chrX	74494470	rs4892396	T	G	14585.77	.	AC=2;AF=1.00;AN=2;DB;DP=360;set=Intersection	GT:AD:AF:DP	1/1:0,357:1.00:357
chrX	74494483	rs5981831	A	G	13546.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,298:1.00:298
chrX	74511202	rs5981834	G	C	739.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	74523367	rs972561	A	G	902.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	74598903	rs5937369	G	A	1897.77	.	AC=2;AF=1.00;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	1/1:0,66:1.00:66
chrX	74961968	rs5938183	G	A	3378.77	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	75393304	rs112628457	C	T	66.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.453;ClippingRankSum=0.000;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=2.071;SOR=0.653;set=HC	GT:AD:AF:DP	0/1:39,8:0.17:47
chrX	75395172	rs2301863	T	C	888.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	75395187	rs2301862	C	T	594.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,23:0.72:32
chrX	76139959	rs232961	C	T	75.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:5,4:0.44:9
chrX	76709500	.	C	T	1070.77	.	AC=1;AF=0.500;AN=2;DP=63;set=Intersection	GT:AD:AF:DP	0/1:19,44:0.70:63
chrX	76709544	rs73224157	G	A	473.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.746;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.31;ReadPosRankSum=2.126;SOR=0.847;set=HC	GT:AD:AF:DP	0/1:109,34:0.24:143
chrX	77086467	rs201564456	TTTTTATTTTATTTTATTTTA	T	386.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	77296047	rs5913631	G	C	3684.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	77298857	rs4826245	G	A	1502.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	77528317	rs320995	G	A	6892.77	.	AC=2;AF=1.00;AN=2;DB;DP=258;set=Intersection	GT:AD:AF:DP	1/1:0,258:1.00:258
chrX	78426471	rs3810712	C	T	3255.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	78426488	rs3810711	T	C	4200.77	.	AC=2;AF=1.00;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	1/1:0,155:1.00:155
chrX	78426988	rs3827440	T	C	8063.77	.	AC=2;AF=1.00;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	1/1:0,291:1.00:291
chrX	78617053	rs1736662	A	G	548.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	78617999	rs1751133	T	C	1025.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	78618050	rs1751134	A	G	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	79698593	rs1113265	C	G	6927.77	.	AC=2;AF=1.00;AN=2;DB;DP=252;set=Intersection	GT:AD:AF:DP	1/1:0,250:1.00:250
chrX	79937084	rs3122406	G	A	1251.77	.	AC=2;AF=1.00;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	1/1:0,44:1.00:44
chrX	79942599	rs3029738	GTATA	G	1130.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=43.49;SOR=3.098;set=HC	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	79943569	rs3122407	T	C	6401.77	.	AC=2;AF=1.00;AN=2;DB;DP=249;set=Intersection	GT:AD:AF:DP	1/1:0,248:1.00:248
chrX	79947490	.	T	TA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.521;ClippingRankSum=0.000;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.151;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:22,10:0.31:32
chrX	79985641	rs34820109	C	A	191.41	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:1,8:0.89:9
chrX	79999796	rs58601634	T	TCAC	1626.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	80064910	rs200402115	A	AC	6445.73	.	AC=2;AF=1.00;AN=2;DB;DP=259;set=Intersection	GT:AD:AF:DP	1/1:6,225:0.97:231
chrX	80377175	rs60170251	GA	G	212.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.61;ReadPosRankSum=-0.171;SOR=0.624;set=HC	GT:AD:AF:DP	0/1:36,23:0.39:59
chrX	82764040	rs5921978	A	G	13315.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.09;SOR=0.849;set=HC	GT:AD:AF:DP	1/1:0,302:1.00:302
chrX	82764040	.	AGG	GGC	2947	.	AC=2;AF=1.00;AN=2;BRF=0.2;FR=1.0000;HP=2;HapScore=1;MGOF=0;MMLQ=23;MQ=60.0;NF=142;NR=118;PP=2947;QD=20;SC=GCAGGTTCGAAGGCTTGCAGC;SbPval=0.51;Source=Platypus;TC=269;TCF=147;TCR=122;TR=260;WE=82764050;WS=82764030;set=Platypus	GT:AD:AF:DP	1/1:9,260:0.97:269
chrX	82764042	rs5921979	G	C	13315.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.83;SOR=0.844;set=HC	GT:AD:AF:DP	1/1:0,297:1.00:297
chrX	83119939	rs5922000	T	C	1855.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	83124802	rs5968237	A	T	91.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	83403178	rs1539517	G	C	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.313;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=2.240;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=1.198;SOR=0.446;set=HC	GT:AD:AF:DP	0/1:54,18:0.25:72
chrX	83442983	.	CCCGCCGCCGCCG	C	3549.73	.	AC=1;AF=0.500;AN=2;DP=196;set=Intersection	GT:AD:AF:DP	0/1:39,90:0.70:129
chrX	83588660	rs5922965	A	G	82.03	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	84258843	rs3747422	C	G	1427.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	84349807	rs4828124	G	A	536.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	84350010	rs4828326	A	G	3621.77	.	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.44;SOR=0.768;set=HC	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	84350128	rs4828327	G	T	1035.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	84358864	rs5922146	C	T	2879.77	.	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.48;SOR=0.747;set=HC	GT:AD:AF:DP	1/1:0,113:1.00:113
chrX	84363140	rs10126146	A	G	5494.77	.	AC=2;AF=1.00;AN=2;DB;DP=212;set=Intersection	GT:AD:AF:DP	1/1:0,210:1.00:210
chrX	84534383	rs2227090	A	C	1304.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.570;ClippingRankSum=0.000;DB;DP=79;ExcessHet=3.0103;FS=2.865;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.95;ReadPosRankSum=0.846;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:11,66:0.86:77
chrX	84537132	rs151042142	T	C	51.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.108;ClippingRankSum=0.000;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.05;ReadPosRankSum=-0.697;SOR=0.120;set=HC	GT:AD:AF:DP	0/1:13,4:0.24:17
chrX	84563135	rs363774	T	A	4483.77	.	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.22;SOR=1.057;set=HC	GT:AD:AF:DP	1/1:0,171:1.00:171
chrX	85282415	rs1015148	G	A	1654.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	85994683	rs6623765	G	T	118.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:15,7:0.32:22
chrX	86071151	rs12837683	C	G	216.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;ClippingRankSum=0.000;DB;DP=102;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.15;ReadPosRankSum=0.248;SOR=0.711;set=HC	GT:AD:AF:DP	0/1:80,21:0.21:101
chrX	86869103	rs5924064	A	G	2055.77	.	AC=1;AF=0.500;AN=2;DB;DP=132;set=Intersection	GT:AD:AF:DP	0/1:37,94:0.72:131
chrX	86869348	rs5922464	C	A	677.28	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:3,25:0.89:28
chrX	86872866	rs5924069	G	T	592.78	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:2,21:0.91:23
chrX	86877348	rs2273050	G	T	308.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741;ClippingRankSum=0.000;DB;DP=147;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.11;ReadPosRankSum=1.428;SOR=0.722;set=HC	GT:AD:AF:DP	0/1:115,31:0.21:146
chrX	86887244	rs222084	C	T	2281.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	88008423	rs5940915	A	C	1895.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,64:1.00:64
chrX	88008807	rs5984611	G	A	6589.77	.	AC=2;AF=1.00;AN=2;DB;DP=248;set=Intersection	GT:AD:AF:DP	1/1:0,246:1.00:246
chrX	88009322	rs5984613	A	G	1758.77	.	AC=2;AF=1.00;AN=2;DB;DP=70;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	89177024	rs5983979	A	G	1415.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	89177109	rs11575111	G	C	4427.77	.	AC=2;AF=1.00;AN=2;DB;DP=160;set=Intersection	GT:AD:AF:DP	1/1:0,160:1.00:160
chrX	89177673	rs2290380	G	A	11002.77	.	AC=2;AF=1.00;AN=2;DB;DP=414;set=Intersection	GT:AD:AF:DP	1/1:0,414:1.00:414
chrX	91066106	rs147052878	G	C	1015.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.876;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.851;MLEAC=1;MLEAF=0.500;MQ=40.86;MQRankSum=-1.226;QD=18.47;ReadPosRankSum=0.879;SOR=2.935;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chrX	91066365	rs200537802	G	A	989.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:20,38:0.66:58
chrX	91147703	rs35310035	A	AT	698.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.071;ClippingRankSum=0.000;DB;DP=122;ExcessHet=3.0103;FS=2.955;MLEAC=1;MLEAF=0.500;MQ=58.23;MQRankSum=-0.213;QD=7.06;ReadPosRankSum=0.251;SOR=0.920;set=HC	GT:AD:AF:DP	0/1:45,54:0.55:99
chrX	91518011	rs5903000	CA	C	128.14	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;ClippingRankSum=-0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=9.86;ReadPosRankSum=0.253;SOR=0.293;set=HC	GT:AD:AF:DP	1/1:2,11:0.85:13
chrX	91675436	rs12863110	A	C	3509.77	.	AC=2;AF=1.00;AN=2;DB;DP=136;set=Intersection	GT:AD:AF:DP	1/1:0,136:1.00:136
chrX	92927634	rs1045686	G	C	1141.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.284;ClippingRankSum=0.000;DB;DP=240;ExcessHet=3.0103;FS=1.757;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.82;ReadPosRankSum=0.140;SOR=0.823;set=HC	GT:AD:AF:DP	0/1:170,67:0.28:237
chrX	95990839	rs20386	A	T	311.77	.	AC=1;AF=0.500;AN=2;DB;DP=52;set=Intersection	GT:AD:AF:DP	0/1:31,18:0.37:49
chrX	95990883	rs5949989	A	G	237.77	.	AC=1;AF=0.500;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	0/1:25,15:0.38:40
chrX	96013128	rs2297827	CC	TT	1059.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.167;ClippingRankSum=0.000;DB;DP=160;ExcessHet=3.0103;FS=0.000;JOINED;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.71;ReadPosRankSum=0.779;SOR=0.658;set=HC	GT:AD:AF:DP	0/1:124,34:0.22:158
chrX	96018052	rs11339405	GT	G	447.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=0.792;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.62;ReadPosRankSum=-1.197;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:61,36:0.37:97
chrX	96171416	rs56682273	G	GT	180.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.733;ClippingRankSum=0.000;DB;DP=35;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.781;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:15,19:0.56:34
chrX	96196880	rs1494130	A	G	278.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=23.23;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	96197175	rs5920973	G	A	1481.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.55;SOR=0.997;set=HC	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	96213213	rs5966792	T	C	1150.77	.	AC=2;AF=1.00;AN=2;DB;DP=38;set=Intersection	GT:AD:AF:DP	1/1:0,38:1.00:38
chrX	96502650	rs1409192	C	T	1920.84	.	AC=1;AF=0.500;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	0/1:8,72:0.90:80
chrX	99661969	rs1953337	G	A	1938.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;ClippingRankSum=0.000;DB;DP=557;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.49;ReadPosRankSum=1.592;SOR=0.739;set=HC	GT:AD:AF:DP	0/1:421,134:0.24:555
chrX	99840419	rs56242689	G	C	1458.77	.	AC=1;AF=0.500;AN=2;DB;DP=79;set=Intersection	GT:AD:AF:DP	0/1:16,62:0.79:78
chrX	99849017	rs2073162	G	A	4869.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	99849051	rs2073163	T	C	3060.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	99887402	.	C	CA	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;ClippingRankSum=0.000;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.49;MQRankSum=1.468;QD=2.44;ReadPosRankSum=-1.705;SOR=0.963;set=HC	GT:AD:AF:DP	0/1:13,7:0.35:20
chrX	99919733	rs2022475	G	A	2325.77	.	AC=2;AF=1.00;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	1/1:0,88:1.00:88
chrX	99930886	.	T	TACACACAC	769.73	.	AC=2;AF=1.00;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=36.65;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	99930892	rs4828041	T	C	1171.73	.	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.40;SOR=3.352;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	99941705	rs2022039	T	C	5308.77	.	AC=2;AF=1.00;AN=2;DB;DP=200;set=Intersection	GT:AD:AF:DP	1/1:0,200:1.00:200
chrX	99943244	rs5921627	G	C	2819.77	.	AC=2;AF=1.00;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	1/1:0,101:1.00:101
chrX	99956157	rs5967170	T	C	682.77	.	AC=2;AF=1.00;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	1/1:0,22:1.00:22
chrX	100212525	rs6616208	T	C	3602.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	100242305	rs5921702	G	A	1236.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,42:1.00:42
chrX	100243459	rs3934462	G	T	5174.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,184:1.00:184
chrX	100245606	rs6523438	A	G	8637.77	.	AC=2;AF=1.00;AN=2;DB;DP=337;set=Intersection	GT:AD:AF:DP	1/1:0,336:1.00:336
chrX	100265713	rs7885599	T	C	117.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.750;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.87;ReadPosRankSum=0.574;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:51,12:0.19:63
chrX	100268568	.	C	A	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-4.920;QD=4.57;ReadPosRankSum=2.161;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chrX	100268569	.	T	G	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DP=26;ExcessHet=3.0103;FS=2.079;MLEAC=1;MLEAF=0.500;MQ=57.60;MQRankSum=-4.920;QD=4.57;ReadPosRankSum=2.432;SOR=0.784;set=HC	GT:AD:AF:DP	0/1:21,5:0.19:26
chrX	100268595	.	G	A	133.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;ClippingRankSum=0.000;DP=21;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=57.01;MQRankSum=-4.370;QD=6.37;ReadPosRankSum=1.452;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:16,5:0.24:21
chrX	100268601	.	C	T	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=2.017;MLEAC=1;MLEAF=0.500;MQ=56.69;MQRankSum=-4.127;QD=7.20;ReadPosRankSum=0.744;SOR=0.868;set=HC	GT:AD:AF:DP	0/1:14,5:0.26:19
chrX	100268610	.	GCA	G	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-4.014;QD=4.93;ReadPosRankSum=0.480;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chrX	100268615	.	C	CAT	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.317;ClippingRankSum=0.000;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.81;MQRankSum=-4.014;QD=4.93;ReadPosRankSum=0.160;SOR=0.473;set=HC	GT:AD:AF:DP	0/1:14,4:0.22:18
chrX	100268623	.	A	C	94.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.425;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=57.93;MQRankSum=-4.139;QD=4.99;ReadPosRankSum=0.050;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:15,4:0.21:19
chrX	100274462	rs113162285	C	T	1515.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:11,65:0.86:76
chrX	100275349	.	C	T	206.77	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:19,10:0.34:29
chrX	100275592	.	GAGA	G	1356.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.291;ClippingRankSum=0.000;DP=241;ExcessHet=3.0103;FS=3.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.46;ReadPosRankSum=0.253;SOR=0.981;set=HC	GT:AD:AF:DP	0/1:165,45:0.21:210
chrX	100275630	rs200657512	AGTTT	A	814.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;ClippingRankSum=0.000;DB;DP=168;ExcessHet=3.0103;FS=3.898;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.50;ReadPosRankSum=-0.491;SOR=1.141;set=HC	GT:AD:AF:DP	0/1:118,30:0.20:148
chrX	100375865	rs368295326	CT	C	131.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.16;ReadPosRankSum=-2.445;SOR=0.608;set=HC	GT:AD:AF:DP	0/1:40,21:0.34:61
chrX	100400023	rs2295376	A	G	386.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:61,22:0.27:83
chrX	100403192	rs145660857	C	T	54.77	.	AC=1;AF=0.500;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	0/1:3,3:0.50:6
chrX	100416622	rs139786550	T	C	1370.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.57;ReadPosRankSum=-0.304;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:15,63:0.81:78
chrX	100505617	rs3747280	G	C	1301.77	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:13,61:0.82:74
chrX	100505881	rs4827893	C	G	1949.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:18,77:0.81:95
chrX	100511098	rs3213505	C	T	1541.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.292;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=9.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.52;ReadPosRankSum=-0.815;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:18,70:0.80:88
chrX	100514986	rs5967281	G	A	2742.77	.	AC=1;AF=0.500;AN=2;DB;DP=156;set=Intersection	GT:AD:AF:DP	0/1:38,118:0.76:156
chrX	100530312	rs199961591	GA	G	388.79	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.411;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.43;ReadPosRankSum=-1.130;SOR=0.998;set=HC	GT:AD:AF:DP	0/1:7,27:0.79:34
chrX	100531204	rs3761514	T	C	876.77	.	AC=1;AF=0.500;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	0/1:20,34:0.63:54
chrX	100531413	rs199759165	TTCATCC	T	6731.73	.	AC=1;AF=0.500;AN=2;DB;DP=327;set=Intersection	GT:AD:AF:DP	0/1:82,172:0.68:254
chrX	100532924	rs3788765	A	G	1682.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:27,67:0.71:94
chrX	100532985	rs3788764	T	C	3927.77	.	AC=1;AF=0.500;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	0/1:50,176:0.78:226
chrX	100533273	rs4986657	C	T	451.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chrX	100536873	.	CTTT	C	177.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=13.67;ReadPosRankSum=0.431;SOR=0.527;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chrX	100537154	rs5991927	G	A	714.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:20,31:0.61:51
chrX	100547933	rs5951328	A	G	4742.77	.	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.50;SOR=0.727;set=HC	GT:AD:AF:DP	1/1:0,179:1.00:179
chrX	100604757	rs700	T	G	205.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.41;ReadPosRankSum=0.550;SOR=0.399;set=HC	GT:AD:AF:DP	0/1:25,13:0.34:38
chrX	100609547	rs2071223	G	A	288.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;ClippingRankSum=0.000;DB;DP=86;ExcessHet=3.0103;FS=2.329;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=-0.979;SOR=1.104;set=HC	GT:AD:AF:DP	0/1:67,19:0.22:86
chrX	100615023	rs2746110	T	G	779.77	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:7,33:0.82:40
chrX	100617372	rs2071222	T	C	445.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	100626864	rs3027629	C	T	288.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chrX	100666907	.	C	CT	244.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;ClippingRankSum=0.000;DP=347;ExcessHet=3.0103;FS=0.589;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.981;QD=0.75;ReadPosRankSum=-1.121;SOR=0.767;set=HC	GT:AD:AF:DP	0/1:266,61:0.19:327
chrX	100742551	rs2361298	G	A	1183.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.532;ClippingRankSum=0.000;DB;DP=88;ExcessHet=3.0103;FS=4.230;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=13.45;ReadPosRankSum=-0.453;SOR=0.493;set=HC	GT:AD:AF:DP	0/1:32,56:0.64:88
chrX	100743037	rs963618	C	T	2003.77	.	AC=1;AF=0.500;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	0/1:24,87:0.78:111
chrX	100743826	rs5951332	A	G	2218.77	.	AC=1;AF=0.500;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	0/1:27,96:0.78:123
chrX	100745825	rs5951333	T	C	4350.77	.	AC=1;AF=0.500;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	0/1:78,186:0.70:264
chrX	100748078	rs5991911	A	G	3705.77	.	AC=2;AF=1.00;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	1/1:0,131:1.00:131
chrX	100749127	rs5951336	A	G	4305.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;ClippingRankSum=0.000;DB;DP=277;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=59.21;MQRankSum=-1.510;QD=16.82;ReadPosRankSum=-0.692;SOR=0.649;set=HC	GT:AD:AF:DP	0/1:62,194:0.76:256
chrX	100749585	rs3174476	C	T	2181.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:28,91:0.76:119
chrX	100808222	rs1044275	C	T	6354.77	.	AC=1;AF=0.500;AN=2;DB;DP=351;set=Intersection	GT:AD:AF:DP	0/1:75,276:0.79:351
chrX	100911066	rs3850315	C	T	1586.77	.	AC=1;AF=0.500;AN=2;DB;DP=101;set=Intersection	GT:AD:AF:DP	0/1:31,70:0.69:101
chrX	101093048	rs66689050	GA	G	67.25	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.34;QD=22.42;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	101138792	rs5944882	T	C	6936.77	.	AC=2;AF=1.00;AN=2;DB;DP=266;set=Intersection	GT:AD:AF:DP	1/1:0,266:1.00:266
chrX	101141776	rs67953349	AC	A	619.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	101141793	rs5944778	G	A	200.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:5,10:0.67:15
chrX	101395780	rs11408120	T	TG	7973.73	.	AC=2;AF=1.00;AN=2;DB;DP=264;set=Intersection	GT:AD:AF:DP	1/1:0,238:1.00:238
chrX	101437635	rs5945049	A	G	6624.77	.	AC=1;AF=0.500;AN=2;DB;DP=445;set=Intersection	GT:AD:AF:DP	0/1:136,307:0.69:443
chrX	101587708	.	C	T	57.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;ClippingRankSum=0.000;DP=19;ExcessHet=3.0103;FS=1.952;MLEAC=1;MLEAF=0.500;MQ=50.44;MQRankSum=-1.074;QD=3.21;ReadPosRankSum=-1.384;SOR=1.329;set=HC	GT:AD:AF:DP	0/1:10,8:0.44:18
chrX	101587716	.	T	C	46.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.293;ClippingRankSum=-0.000;DP=14;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=51.25;MQRankSum=0.242;QD=3.34;ReadPosRankSum=-2.748;SOR=0.804;set=HC	GT:AD:AF:DP	0/1:8,6:0.43:14
chrX	101587717	.	T	C	146.77	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=0.517;ClippingRankSum=-0.000;DP=15;ExcessHet=3.0103;FS=5.021;MLEAC=1;MLEAF=0.500;MQ=50.58;MQRankSum=-1.742;QD=9.78;ReadPosRankSum=2.402;SOR=0.557;set=HC	GT:AD:AF:DP	0/1:8,7:0.47:15
chrX	101587724	.	C	CT	147.73	.	AC=1;AF=0.500;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=48.21;QD=21.10;SOR=0.941;set=HC	GT:AD:AF:DP	0/1:0,7:1.00:7
chrX	101623586	.	ATGGTGG	A,ATGG	11941.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-0.186;ClippingRankSum=0.000;DP=715;ExcessHet=3.0103;FS=2.741;MLEAC=1,1;MLEAF=0.500,0.500;MQ=59.13;MQRankSum=0.626;QD=31.51;ReadPosRankSum=-0.836;SOR=1.976;set=HC	GT:AD:AF:DP	1/2:8,37,334:0.10,0.88:379
chrX	102174289	rs34889669	T	C	629.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.49;SOR=6.091;set=HC	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	102332171	.	CTTTT	C	109.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.987;ClippingRankSum=0.000;DP=125;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=-0.619;QD=1.86;ReadPosRankSum=0.956;SOR=0.885;set=HC	GT:AD:AF:DP	0/1:48,11:0.19:59
chrX	102339606	rs1029305	T	C	3383.77	.	AC=2;AF=1.00;AN=2;DB;DP=126;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	102342405	rs5945935	G	A	878.77	.	AC=1;AF=0.500;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	0/1:27,37:0.58:64
chrX	102840421	rs221931	G	T	1556.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	102979486	rs4907817	T	C	3791.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	102979992	rs2239814	A	G	74.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=18.51;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	103031700	rs11371342	A	AG	1230.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.51;QD=30.77;SOR=1.151;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	103036412	rs521895	A	G	1060.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	103267865	rs553509	C	T	4543.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	103268241	rs7885967	G	A	8125.77	.	AC=2;AF=1.00;AN=2;DB;DP=302;set=Intersection	GT:AD:AF:DP	1/1:0,300:1.00:300
chrX	103274226	rs494006	A	G	1160.77	.	AC=2;AF=1.00;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	103294760	rs2301384	C	T	6321.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,215:1.00:215
chrX	103316459	rs202236711	G	A	4212.77	.	AC=1;AF=0.500;AN=2;DB;DP=446;set=Intersection	GT:AD:AF:DP	0/1:237,209:0.47:446
chrX	103495088	.	GAG	CAC	451	.	AC=1;AF=0.500;AN=2;BRF=0.15;FR=0.5000;HP=2;HapScore=2;MGOF=7;MMLQ=23;MQ=53.44;NF=1;NR=10;PP=451;QD=45.8607158966;SC=CCGGGTGGCAGAGGCGCCATG;SbPval=0.92;Source=Platypus;TC=28;TCF=6;TCR=22;TR=11;WE=103495098;WS=103495078;set=Platypus	GT:AD:AF:DP	1/0:17,11:0.39:28
chrX	103495552	rs41305431	T	C	1831.77	.	AC=2;AF=1.00;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	1/1:0,65:1.00:65
chrX	104464276	rs375033944	CA	C	16719.73	.	AC=2;AF=1.00;AN=2;DB;DP=638;set=Intersection	GT:AD:AF:DP	1/1:2,625:1.00:627
chrX	104464281	rs367644904	TC	T	28069.73	.	AC=2;AF=1.00;AN=2;DB;DP=624;set=Intersection	GT:AD:AF:DP	1/1:0,621:1.00:621
chrX	105132225	rs17332342	T	C	1502.77	.	AC=1;AF=0.500;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	0/1:15,61:0.80:76
chrX	105153001	rs209372	A	G	8941.77	.	AC=2;AF=1.00;AN=2;DB;DP=325;set=Intersection	GT:AD:AF:DP	1/1:0,324:1.00:324
chrX	105179132	rs209095	C	T	2393.77	.	AC=1;AF=0.500;AN=2;DB;DP=141;set=Intersection	GT:AD:AF:DP	0/1:39,100:0.72:139
chrX	106028279	.	G	GT	108.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.173;ClippingRankSum=0.000;DP=64;ExcessHet=3.0103;FS=1.131;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=1.713;QD=1.73;ReadPosRankSum=-1.052;SOR=0.883;set=HC	GT:AD:AF:DP	0/1:48,15:0.24:63
chrX	106092450	.	AT	A	198.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.409;ClippingRankSum=0.000;DP=50;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.62;ReadPosRankSum=-1.004;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:9,21:0.70:30
chrX	106144537	rs55662019	A	T	319.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:3,12:0.80:15
chrX	106184601	rs3835279	TGAGAGAGA	T,TGAGA	1283.73	.	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.00;QD=41.41;SOR=1.302;set=HC	GT:AD:AF:DP	1/2:0,15,16:0.48,0.52:31
chrX	106200202	rs6622126	G	A	4935.77	.	AC=2;AF=1.00;AN=2;DB;DP=183;MQ=60.06;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	106221389	rs41304048	T	C	5090.77	.	AC=1;AF=0.500;AN=2;DB;DP=304;set=Intersection	GT:AD:AF:DP	0/1:73,231:0.76:304
chrX	106221490	rs12012022	C	T	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=3.180;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.03;ReadPosRankSum=-2.019;SOR=1.153;set=HC	GT:AD:AF:DP	0/1:123,22:0.15:145
chrX	106313508	rs6622143	G	A	4324.77	.	AC=1;AF=0.500;AN=2;DB;DP=255;set=Intersection	GT:AD:AF:DP	0/1:59,195:0.77:254
chrX	106360086	rs6523920	C	A	181.77	.	AC=1;AF=0.500;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chrX	106362078	rs3216052	CT	C	1425.73	.	AC=1;AF=0.500;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	0/1:11,45:0.80:56
chrX	106367698	rs186450791	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.644;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.63;ReadPosRankSum=0.659;SOR=0.260;set=HC	GT:AD:AF:DP	0/1:45,7:0.13:52
chrX	106396402	rs1298577	A	G	5907.77	.	AC=1;AF=0.500;AN=2;DB;DP=392;set=Intersection	GT:AD:AF:DP	0/1:119,271:0.69:390
chrX	106396455	rs1285590	A	G	4006.77	.	AC=1;AF=0.500;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	0/1:62,177:0.74:239
chrX	106459810	rs5962806	T	G	167.10	.	AC=1;AF=0.500;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	0/1:1,7:0.88:8
chrX	106462267	rs1954365	C	T	395.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:8,15:0.65:23
chrX	106486286	.	T	TG	129.73	.	AC=1;AF=0.500;AN=2;DP=11;set=Intersection	GT:AD:AF:DP	0/1:4,7:0.64:11
chrX	106841056	.	TGAG	T	363.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.870;ClippingRankSum=0.000;DP=308;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.34;ReadPosRankSum=0.241;SOR=0.730;set=HC	GT:AD:AF:DP	0/1:244,27:0.10:271
chrX	107304707	rs200756900	A	G	435.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;ClippingRankSum=0.000;DB;DP=130;ExcessHet=3.0103;FS=0.751;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=1.058;SOR=0.697;set=HC	GT:AD:AF:DP	0/1:97,33:0.25:130
chrX	107328436	rs807178	G	A	3400.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	107332133	rs201894843	GA	G	4077.73	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,181:1.00:181
chrX	107371904	rs61191454	TA	T	651.73	.	AC=2;AF=1.00;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	107393330	rs3215492	T	TG	3508.73	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	107395020	.	CT	C	811.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=4.366;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.64;ReadPosRankSum=1.004;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:135,40:0.23:175
chrX	107396365	rs1883411	G	A	1545.77	.	AC=2;AF=1.00;AN=2;DB;DP=60;set=Intersection	GT:AD:AF:DP	1/1:0,60:1.00:60
chrX	107415825	rs2881142	T	C	1263.77	.	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.89;SOR=1.514;set=HC	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	107417606	rs145357359	G	A	410.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.604;ClippingRankSum=0.000;DB;DP=128;ExcessHet=3.0103;FS=0.814;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=2.268;SOR=0.529;set=HC	GT:AD:AF:DP	0/1:97,30:0.24:127
chrX	107418281	rs2295914	C	T	3490.77	.	AC=2;AF=1.00;AN=2;DB;DP=129;set=Intersection	GT:AD:AF:DP	1/1:0,129:1.00:129
chrX	107418906	rs4623610	A	G	6320.77	.	AC=2;AF=1.00;AN=2;DB;DP=245;set=Intersection	GT:AD:AF:DP	1/1:0,245:1.00:245
chrX	107423674	.	TACACAC	T,TAC	5299.73	.	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.327;ClippingRankSum=0.000;DP=143;ExcessHet=3.0103;FS=2.894;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.45;MQRankSum=0.305;QD=38.97;ReadPosRankSum=0.208;SOR=1.851;set=HC	GT:AD:AF:DP	1/2:2,19,115:0.14,0.85:136
chrX	107430579	rs1266715	G	A	3009.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,112:1.00:112
chrX	107433669	rs34740537	C	T	4105.77	.	AC=1;AF=0.500;AN=2;DB;DP=206;set=Intersection	GT:AD:AF:DP	0/1:35,170:0.83:205
chrX	107433688	rs1042065	A	G	5879.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,214:1.00:214
chrX	107437848	rs1266719	G	C	4232.77	.	AC=2;AF=1.00;AN=2;DB;DP=162;set=Intersection	GT:AD:AF:DP	1/1:0,162:1.00:162
chrX	107438119	rs1266720	G	T	515.77	.	AC=2;AF=1.00;AN=2;DB;DP=16;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	107448639	rs1266730	G	T	5909.77	.	AC=2;AF=1.00;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	1/1:0,224:1.00:224
chrX	107450101	rs1266732	T	G	1628.77	.	AC=2;AF=1.00;AN=2;DB;DP=64;set=Intersection	GT:AD:AF:DP	1/1:0,63:1.00:63
chrX	107455014	rs1266736	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	107463090	rs201304389	CCCATATTGTATT	C	1944.73	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	107918007	rs200814705	CT	C	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.403;ClippingRankSum=0.000;DB;DP=111;ExcessHet=3.0103;FS=1.140;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=2.074;QD=1.68;ReadPosRankSum=1.023;SOR=0.982;set=HC	GT:AD:AF:DP	0/1:58,29:0.33:87
chrX	108638614	rs35726803	C	T	1187.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:13,52:0.80:65
chrX	108708516	rs502209	C	T	6349.77	.	AC=2;AF=1.00;AN=2;DB;DP=234;set=Intersection	GT:AD:AF:DP	1/1:0,233:1.00:233
chrX	108904729	rs839408	C	T	1491.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,58:1.00:58
chrX	109387928	rs946820	G	A	377.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.787;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=2.032;SOR=0.577;set=HC	GT:AD:AF:DP	0/1:121,32:0.21:153
chrX	109416688	rs34813944	AT	A	1140.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;ClippingRankSum=0.000;DB;DP=167;ExcessHet=3.0103;FS=0.739;MLEAC=1;MLEAF=0.500;MQ=60.19;MQRankSum=1.302;QD=9.13;ReadPosRankSum=-3.843;SOR=0.821;set=HC	GT:AD:AF:DP	0/1:41,84:0.67:125
chrX	109419165	rs2795995	G	A	1741.77	.	AC=1;AF=0.500;AN=2;DB;DP=100;set=Intersection	GT:AD:AF:DP	0/1:27,73:0.73:100
chrX	109507669	.	G	GT	264.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092;ClippingRankSum=0.000;DP=188;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.45;ReadPosRankSum=-0.993;SOR=0.627;set=HC	GT:AD:AF:DP	0/1:146,36:0.20:182
chrX	110416182	rs372455411	TTC	T	80.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;ClippingRankSum=0.000;DB;DP=248;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.34;ReadPosRankSum=1.043;SOR=0.671;set=HC	GT:AD:AF:DP	0/1:210,29:0.12:239
chrX	110496310	rs17885163	G	A	1060.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.068;ClippingRankSum=0.000;DB;DP=428;ExcessHet=3.0103;FS=0.646;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.49;ReadPosRankSum=-0.877;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:337,89:0.21:426
chrX	111698036	rs6568050	T	C	6532.77	.	AC=2;AF=1.00;AN=2;DB;DP=240;set=Intersection	GT:AD:AF:DP	1/1:0,239:1.00:239
chrX	111698440	rs7474140	G	T	1470.77	.	AC=1;AF=0.500;AN=2;DB;DP=326;set=Intersection	GT:AD:AF:DP	0/1:231,92:0.28:323
chrX	111698613	rs7053563	T	C	6677.77	.	AC=1;AF=0.500;AN=2;DB;DP=361;set=Intersection	GT:AD:AF:DP	0/1:80,280:0.78:360
chrX	112022617	.	GCTGGAGCAGCAGCAGCAGCAACAGCAA	G	555.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623;ClippingRankSum=0.000;DP=132;ExcessHet=3.0103;FS=1.944;MLEAC=1;MLEAF=0.500;MQ=60.57;MQRankSum=5.767;QD=4.59;ReadPosRankSum=1.099;SOR=0.467;set=HC	GT:AD:AF:DP	0/1:99,22:0.18:121
chrX	113965679	.	G	GT	54.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;ClippingRankSum=0.000;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.38;ReadPosRankSum=-0.246;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:120,25:0.17:145
chrX	114082535	rs5946005	G	A	4553.77	.	AC=2;AF=1.00;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	1/1:0,167:1.00:167
chrX	114400318	rs4361922	T	G	1017.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	114424508	rs12848233	G	T	915.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.376;ClippingRankSum=0.000;DB;DP=265;ExcessHet=3.0103;FS=4.043;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.46;ReadPosRankSum=-0.856;SOR=0.655;set=HC	GT:AD:AF:DP	0/1:200,65:0.25:265
chrX	114425181	.	A	AGAGGCCGCTCGCCCAACGCCCACAGCG	17259.73	.	AC=2;AF=1.00;AN=2;DP=389;set=Intersection	GT:AD:AF:DP	1/1:0,346:1.00:346
chrX	114425400	rs12857270	G	A	12968.77	.	AC=2;AF=1.00;AN=2;DB;DP=476;set=Intersection	GT:AD:AF:DP	1/1:5,469:0.99:474
chrX	114425597	.	T	TG	14174.73	.	AC=1;AF=0.500;AN=2;DP=820;set=Intersection	GT:AD:AF:DP	0/1:179,623:0.78:802
chrX	114426171	rs5946294	C	T	17714.77	.	AC=2;AF=1.00;AN=2;DB;DP=658;set=Intersection	GT:AD:AF:DP	1/1:2,652:1.00:654
chrX	114426917	rs4911809	C	T	11554.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chrX	114863725	rs146211857	T	A	490.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.742;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.23;ReadPosRankSum=0.506;SOR=0.603;set=HC	GT:AD:AF:DP	0/1:118,34:0.22:152
chrX	114874220	rs7051609	G	A	166.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:20,9:0.31:29
chrX	114879399	rs2108099	T	C	1397.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.559;ClippingRankSum=0.000;DB;DP=418;ExcessHet=3.0103;FS=0.603;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.38;ReadPosRankSum=0.828;SOR=0.708;set=HC	GT:AD:AF:DP	0/1:312,102:0.25:414
chrX	114880423	rs871774	T	C	375.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=0.733;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.46;ReadPosRankSum=-0.529;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:120,33:0.22:153
chrX	114880523	rs871773	C	T	357.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:63,25:0.28:88
chrX	114880937	rs2301951	T	C	75.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.307;ClippingRankSum=0.000;DB;DP=63;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.20;ReadPosRankSum=0.566;SOR=0.793;set=HC	GT:AD:AF:DP	0/1:54,9:0.14:63
chrX	115568993	rs12720074	T	A	1820.77	.	AC=1;AF=0.500;AN=2;DB;DP=121;set=Intersection	GT:AD:AF:DP	0/1:41,80:0.66:121
chrX	115573812	rs12720079	T	C	495.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:7,21:0.75:28
chrX	115575989	rs12391221	A	C	831.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:12,32:0.73:44
chrX	115586016	rs191613883	C	T	387.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.91;ReadPosRankSum=0.534;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:8,18:0.69:26
chrX	115593235	rs148475461	G	GAA	1140.73	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:12,35:0.74:47
chrX	117119410	.	TA	T	35.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;ClippingRankSum=-0.000;DP=16;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=-0.000;QD=2.75;ReadPosRankSum=-0.212;SOR=0.551;set=HC	GT:AD:AF:DP	0/1:7,6:0.46:13
chrX	117521338	rs17318100	G	A	1490.77	.	AC=1;AF=0.500;AN=2;DB;DP=99;set=Intersection	GT:AD:AF:DP	0/1:32,67:0.68:99
chrX	117527945	rs10127330	C	G	3511.77	.	AC=2;AF=1.00;AN=2;DB;DP=82;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	117527965	rs10127331	C	T	3874.77	.	AC=2;AF=1.00;AN=2;DB;DP=86;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	117527970	rs34108225	AT	A	4032.73	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	117528056	rs17271416	G	A	4601.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866;ClippingRankSum=0.000;DB;DP=274;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=0.814;QD=16.86;ReadPosRankSum=2.931;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:67,206:0.75:273
chrX	117528142	rs6603401	C	T	7647.77	.	AC=2;AF=1.00;AN=2;DB;DP=288;set=Intersection	GT:AD:AF:DP	1/1:0,288:1.00:288
chrX	117531099	rs5956969	C	A	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	117532516	rs6646189	C	T	2054.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	117544746	rs5956977	C	T	855.77	.	AC=2;AF=1.00;AN=2;DB;DP=31;set=Intersection	GT:AD:AF:DP	1/1:0,31:1.00:31
chrX	117566782	rs10521584	C	T	4929.77	.	AC=1;AF=0.500;AN=2;DB;DP=340;set=Intersection	GT:AD:AF:DP	0/1:111,229:0.67:340
chrX	117570954	rs10590176	TCTG	T	367.74	.	AC=2;AF=1.00;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	117576117	rs56715055	G	A	741.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:17,33:0.66:50
chrX	117577774	rs5957001	C	G	1169.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.41;QD=41.78;SOR=1.382;set=HC	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	117577782	rs5957002	T	C	1076.77	.	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.14;QD=44.87;SOR=1.519;set=HC	GT:AD:AF:DP	1/1:0,24:1.00:24
chrX	117578555	rs72451285	ATTTCTTT	A	691.73	.	AC=1;AF=0.500;AN=2;DB;DP=40;set=Intersection	GT:AD:AF:DP	0/1:10,19:0.66:29
chrX	117582768	rs34131067	C	G	387.77	.	AC=1;AF=0.500;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	0/1:9,19:0.68:28
chrX	117677642	rs1294780	A	G	181.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;ClippingRankSum=0.000;DB;DP=105;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.509;QD=1.73;ReadPosRankSum=-0.466;SOR=0.763;set=HC	GT:AD:AF:DP	0/1:85,20:0.19:105
chrX	117679234	rs55694052	CT	C	68.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.953;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=6.036;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.77;ReadPosRankSum=0.656;SOR=1.596;set=HC	GT:AD:AF:DP	0/1:70,19:0.21:89
chrX	117718670	rs1781090	T	A	241.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.621;ClippingRankSum=0.000;DB;DP=43;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.62;ReadPosRankSum=1.087;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:33,10:0.23:43
chrX	117732044	rs16995229	A	T	173.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.487;ClippingRankSum=0.000;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=8.27;ReadPosRankSum=-1.237;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:11,10:0.48:21
chrX	117742356	rs5910394	C	T	2662.77	.	AC=1;AF=0.500;AN=2;DB;DP=167;set=Intersection	GT:AD:AF:DP	0/1:47,120:0.72:167
chrX	117744184	rs4825597	G	C	3868.77	.	AC=1;AF=0.500;AN=2;DB;DP=195;set=Intersection	GT:AD:AF:DP	0/1:33,162:0.83:195
chrX	117752743	rs200001862	A	AT	1127.73	.	AC=1;AF=0.500;AN=2;DB;DP=73;set=Intersection	GT:AD:AF:DP	0/1:13,54:0.81:67
chrX	117764615	rs1937176	T	C	86.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:18,6:0.25:24
chrX	117810831	rs5957040	C	T	726.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:15,33:0.69:48
chrX	117817266	rs4372173	C	T	2134.77	.	AC=2;AF=1.00;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	1/1:0,82:1.00:82
chrX	117819793	.	A	G	974.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339;ClippingRankSum=0.000;DP=379;ExcessHet=3.0103;FS=0.453;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.57;ReadPosRankSum=-0.970;SOR=0.638;set=HC	GT:AD:AF:DP	0/1:296,83:0.22:379
chrX	117874898	rs2246663	T	C	1561.77	.	AC=2;AF=1.00;AN=2;DB;DP=54;set=Intersection	GT:AD:AF:DP	1/1:0,54:1.00:54
chrX	117908115	.	CT	C	62.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.696;ClippingRankSum=0.000;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.41;ReadPosRankSum=-1.094;SOR=0.719;set=HC	GT:AD:AF:DP	0/1:15,11:0.42:26
chrX	118143043	rs2168379	A	G	3433.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.25;SOR=1.143;set=HC	GT:AD:AF:DP	1/1:0,126:1.00:126
chrX	118147233	rs2290514	G	T	1519.77	.	AC=2;AF=1.00;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	118148229	rs2278954	A	G	7126.77	.	AC=2;AF=1.00;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	1/1:0,277:1.00:277
chrX	118230509	rs145929840	C	T	481.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410;ClippingRankSum=0.000;DB;DP=195;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.47;ReadPosRankSum=-1.229;SOR=0.660;set=HC	GT:AD:AF:DP	0/1:152,43:0.22:195
chrX	118250710	rs5957111	A	C	283.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:9,14:0.61:23
chrX	118281538	rs5910522	C	A	2222.77	.	AC=2;AF=1.00;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	1/1:0,85:1.00:85
chrX	118281635	rs11405916	G	GC	662.73	.	AC=2;AF=1.00;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	118374449	rs375628818	T	C	1776.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:16,77:0.83:93
chrX	118514072	rs217941	A	G	3456.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.22;SOR=1.117;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	118533299	rs217975	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	0/1:8,7:0.47:15
chrX	118533366	rs217976	G	A	638.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:18,30:0.62:48
chrX	118544448	rs16274	T	C	707.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	118560403	rs217997	G	C	229.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:42,14:0.25:56
chrX	118587003	rs3810755	C	T	440.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;ClippingRankSum=0.000;DB;DP=257;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.74;ReadPosRankSum=0.853;SOR=0.679;set=HC	GT:AD:AF:DP	0/1:207,46:0.18:253
chrX	118603713	rs201182381	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.749;ClippingRankSum=0.000;DB;DP=192;ExcessHet=3.0103;FS=0.956;MLEAC=1;MLEAF=0.500;MQ=59.74;MQRankSum=-8.616;QD=0.78;ReadPosRankSum=0.226;SOR=0.549;set=HC	GT:AD:AF:DP	0/1:175,17:0.09:192
chrX	118603729	rs143413528	G	A	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098;ClippingRankSum=0.000;DB;DP=162;ExcessHet=3.0103;FS=0.922;MLEAC=1;MLEAF=0.500;MQ=59.69;MQRankSum=-7.176;QD=2.57;ReadPosRankSum=1.614;SOR=0.504;set=HC	GT:AD:AF:DP	0/1:142,20:0.12:162
chrX	118603742	rs148294496	A	C	464.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.448;ClippingRankSum=0.000;DB;DP=146;ExcessHet=3.0103;FS=4.661;MLEAC=1;MLEAF=0.500;MQ=59.63;MQRankSum=-7.063;QD=3.18;ReadPosRankSum=2.429;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:125,21:0.14:146
chrX	118603747	rs141428607	A	T	480.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=4.711;MLEAC=1;MLEAF=0.500;MQ=59.62;MQRankSum=-6.981;QD=3.36;ReadPosRankSum=2.778;SOR=0.481;set=HC	GT:AD:AF:DP	0/1:122,21:0.15:143
chrX	118603773	rs148920941	T	C	432.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.908;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=1.801;MLEAC=1;MLEAF=0.500;MQ=59.50;MQRankSum=-6.838;QD=3.05;ReadPosRankSum=2.282;SOR=0.512;set=HC	GT:AD:AF:DP	0/1:118,24:0.17:142
chrX	118603818	rs77766798	T	G	455.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.964;ClippingRankSum=0.000;DB;DP=150;ExcessHet=3.0103;FS=0.878;MLEAC=1;MLEAF=0.500;MQ=59.25;MQRankSum=-8.906;QD=3.04;ReadPosRankSum=-0.320;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:129,21:0.14:150
chrX	118603830	rs73637847	A	G	415.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;ClippingRankSum=0.000;DB;DP=154;ExcessHet=3.0103;FS=4.468;MLEAC=1;MLEAF=0.500;MQ=59.05;MQRankSum=-9.824;QD=2.70;ReadPosRankSum=-1.609;SOR=0.880;set=HC	GT:AD:AF:DP	0/1:133,21:0.14:154
chrX	118603844	rs371749	T	G	296.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.431;ClippingRankSum=0.000;DB;DP=161;ExcessHet=3.0103;FS=3.669;MLEAC=1;MLEAF=0.500;MQ=58.96;MQRankSum=1.946;QD=1.84;ReadPosRankSum=-0.795;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:129,32:0.20:161
chrX	118603869	.	G	A	209.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.284;ClippingRankSum=0.000;DP=161;ExcessHet=3.0103;FS=1.001;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-12.146;QD=1.31;ReadPosRankSum=-0.557;SOR=0.519;set=HC	GT:AD:AF:DP	0/1:144,16:0.10:160
chrX	118603872	.	TG	CT	206.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.708;ClippingRankSum=0.000;DP=158;ExcessHet=3.0103;FS=1.010;JOINED;MLEAC=1;MLEAF=0.500;MQ=58.53;MQRankSum=-12.068;QD=1.31;ReadPosRankSum=-0.636;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:142,16:0.10:158
chrX	118603881	.	A	T	170.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.722;ClippingRankSum=0.000;DP=157;ExcessHet=3.0103;FS=2.265;MLEAC=1;MLEAF=0.500;MQ=58.52;MQRankSum=-12.468;QD=1.09;ReadPosRankSum=0.350;SOR=0.664;set=HC	GT:AD:AF:DP	0/1:142,15:0.10:157
chrX	118603894	rs369273898	C	T	83.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.467;ClippingRankSum=0.000;DB;DP=153;ExcessHet=3.0103;FS=2.353;MLEAC=1;MLEAF=0.500;MQ=58.35;MQRankSum=-11.896;QD=0.55;ReadPosRankSum=1.569;SOR=1.051;set=HC	GT:AD:AF:DP	0/1:138,14:0.09:152
chrX	118603925	rs200550329	G	A	280.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=1.032;MLEAC=1;MLEAF=0.500;MQ=57.96;MQRankSum=-10.873;QD=2.21;ReadPosRankSum=1.662;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:112,15:0.12:127
chrX	118603929	.	C	T	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.931;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=2.245;MLEAC=1;MLEAF=0.500;MQ=57.70;MQRankSum=-10.585;QD=2.86;ReadPosRankSum=0.950;SOR=1.038;set=HC	GT:AD:AF:DP	0/1:104,16:0.13:120
chrX	118603941	.	T	C	338.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370;ClippingRankSum=0.000;DP=104;ExcessHet=3.0103;FS=3.943;MLEAC=1;MLEAF=0.500;MQ=57.36;MQRankSum=-9.801;QD=3.29;ReadPosRankSum=0.299;SOR=1.339;set=HC	GT:AD:AF:DP	0/1:88,15:0.15:103
chrX	118603958	rs201050239	G	A	270.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457;ClippingRankSum=0.000;DB;DP=95;ExcessHet=3.0103;FS=6.173;MLEAC=1;MLEAF=0.500;MQ=57.59;MQRankSum=-9.667;QD=2.85;ReadPosRankSum=1.078;SOR=1.609;set=HC	GT:AD:AF:DP	0/1:82,13:0.14:95
chrX	118603961	.	CT	C	261.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.153;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=6.240;MLEAC=1;MLEAF=0.500;MQ=57.56;MQRankSum=-9.615;QD=2.78;ReadPosRankSum=0.992;SOR=1.600;set=HC	GT:AD:AF:DP	0/1:81,13:0.14:94
chrX	118603984	rs199678822	G	A	172.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.310;ClippingRankSum=0.000;DB;DP=96;ExcessHet=3.0103;FS=15.153;MLEAC=1;MLEAF=0.500;MQ=58.33;MQRankSum=-9.723;QD=1.80;ReadPosRankSum=2.046;SOR=3.044;set=HC	GT:AD:AF:DP	0/1:87,9:0.09:96
chrX	118604004	rs200209943	C	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345;ClippingRankSum=0.000;DB;DP=94;ExcessHet=3.0103;FS=10.228;MLEAC=1;MLEAF=0.500;MQ=58.80;MQRankSum=-9.621;QD=0.33;ReadPosRankSum=1.407;SOR=2.266;set=HC	GT:AD:AF:DP	0/1:88,6:0.06:94
chrX	118605012	rs80323990	G	C	118.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976;ClippingRankSum=0.000;DB;DP=78;ExcessHet=3.0103;FS=8.037;MLEAC=1;MLEAF=0.500;MQ=58.92;MQRankSum=-7.933;QD=1.56;ReadPosRankSum=0.490;SOR=0.090;set=HC	GT:AD:AF:DP	0/1:69,7:0.09:76
chrX	118605017	rs77294853	C	T	102.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.528;ClippingRankSum=0.000;DB;DP=73;ExcessHet=3.0103;FS=8.077;MLEAC=1;MLEAF=0.500;MQ=59.06;MQRankSum=-6.437;QD=1.45;ReadPosRankSum=-0.247;SOR=0.089;set=HC	GT:AD:AF:DP	0/1:63,8:0.11:71
chrX	118605023	rs74343587	T	G	126.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.297;ClippingRankSum=0.000;DB;DP=69;ExcessHet=3.0103;FS=8.338;MLEAC=1;MLEAF=0.500;MQ=59.01;MQRankSum=-6.239;QD=1.89;ReadPosRankSum=0.286;SOR=0.083;set=HC	GT:AD:AF:DP	0/1:59,8:0.12:67
chrX	118678364	rs5910611	G	A	145.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=1.141;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.52;ReadPosRankSum=-0.112;SOR=0.967;set=HC	GT:AD:AF:DP	0/1:80,16:0.17:96
chrX	118679315	.	C	CA	33.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541;ClippingRankSum=0.000;DP=28;ExcessHet=3.0103;FS=1.853;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=1.775;QD=1.25;ReadPosRankSum=0.526;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:20,7:0.26:27
chrX	118699320	rs5910616	A	G	20768.77	.	AC=2;AF=1.00;AN=2;DB;DP=796;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=59.92;QD=26.09;SOR=0.713;set=HC	GT:AD:AF:DP	1/1:0,796:1.00:796
chrX	118709567	rs139399184	T	TA	105.19	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:1,7:0.88:8
chrX	118737263	rs34571222	CA	C	204.94	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.369;ClippingRankSum=0.000;DB;DP=22;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=9.76;ReadPosRankSum=1.241;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:3,18:0.86:21
chrX	118754064	rs59071899	CA	C	497.19	.	AC=2;AF=1.00;AN=2;BaseQRankSum=2.166;ClippingRankSum=0.000;DB;DP=52;ExcessHet=3.0103;FS=1.677;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=11.84;ReadPosRankSum=1.115;SOR=0.418;set=HC	GT:AD:AF:DP	1/1:6,36:0.86:42
chrX	118758107	rs11338110	GT	G	151.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.834;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=4.887;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.90;ReadPosRankSum=0.233;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:8,14:0.64:22
chrX	118758128	rs2782252	T	G	535.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;ClippingRankSum=0.000;DB;DP=23;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=33.48;ReadPosRankSum=-0.204;SOR=0.446;set=HC	GT:AD:AF:DP	1/1:1,15:0.94:16
chrX	118768971	rs56090830	CA	C	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.279;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.20;ReadPosRankSum=1.798;SOR=0.922;set=HC	GT:AD:AF:DP	0/1:13,16:0.55:29
chrX	118783881	rs6603539	G	A	751.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.852;ClippingRankSum=0.000;DB;DP=366;ExcessHet=3.0103;FS=3.067;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.06;ReadPosRankSum=-0.466;SOR=0.926;set=HC	GT:AD:AF:DP	0/1:299,66:0.18:365
chrX	118809732	rs67811876	G	A	76.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:19,6:0.24:25
chrX	118820389	rs28687759	G	A	30.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.438;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.37;ReadPosRankSum=0.828;SOR=1.022;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chrX	118827317	rs17261138	A	C	52.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.626;ClippingRankSum=0.000;DB;DP=16;ExcessHet=3.0103;FS=5.051;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.30;ReadPosRankSum=-0.414;SOR=0.042;set=HC	GT:AD:AF:DP	0/1:11,5:0.31:16
chrX	118892888	rs2782222	G	C	885.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	118893054	rs2782223	C	A	3895.77	.	AC=2;AF=1.00;AN=2;DB;DP=146;set=Intersection	GT:AD:AF:DP	1/1:1,144:0.99:145
chrX	118893137	rs2782224	T	C	5244.77	.	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.71;SOR=0.753;set=HC	GT:AD:AF:DP	1/1:0,204:1.00:204
chrX	118893413	rs2782225	T	C	4845.77	.	AC=2;AF=1.00;AN=2;DB;DP=184;set=Intersection	GT:AD:AF:DP	1/1:0,183:1.00:183
chrX	118920809	rs7885997	C	T	3710.77	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,138:1.00:138
chrX	118921530	rs73214964	A	C	660.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	118925181	rs41304508	C	A	22529.77	.	AC=2;AF=1.00;AN=2;DB;DP=854;set=Intersection	GT:AD:AF:DP	1/1:0,851:1.00:851
chrX	118925705	rs2240448	C	T	2745.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	118985711	rs373850121	CT	C	410.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.61;ReadPosRankSum=2.641;SOR=0.616;set=HC	GT:AD:AF:DP	0/1:16,38:0.70:54
chrX	119054001	rs3829719	C	T	3141.77	.	AC=1;AF=0.500;AN=2;DB;DP=168;set=Intersection	GT:AD:AF:DP	0/1:34,132:0.80:166
chrX	119065893	rs194302	G	A	2626.77	.	AC=1;AF=0.500;AN=2;DB;DP=155;set=Intersection	GT:AD:AF:DP	0/1:37,118:0.76:155
chrX	119070411	rs194307	T	A	869.77	.	AC=1;AF=0.500;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	0/1:13,36:0.73:49
chrX	119070567	rs194308	A	T	527.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,22:0.76:29
chrX	119387833	rs201958171	C	CTGA	12607.73	.	AC=2;AF=1.00;AN=2;DB;DP=334;set=Intersection	GT:AD:AF:DP	1/1:5,289:0.98:294
chrX	119394904	rs3752341	G	T	491.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	119402264	rs41300936	A	C	858.77	.	AC=2;AF=1.00;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	1/1:0,32:1.00:32
chrX	119421163	.	T	TACACACACACACACACACAC	439.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471;ClippingRankSum=0.000;DP=52;ExcessHet=3.0103;FS=4.084;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=12.93;ReadPosRankSum=-0.024;SOR=0.175;set=HC	GT:AD:AF:DP	0/1:21,13:0.38:34
chrX	119421167	rs45453700	C	A	259.77	.	AC=1;AF=0.500;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	0/1:31,17:0.35:48
chrX	119445015	rs3810749	C	T	2183.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:24,83:0.78:107
chrX	119509541	rs5909706	A	G	32.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.941;ClippingRankSum=0.000;DB;DP=13;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=0.178;SOR=0.495;set=HC	GT:AD:AF:DP	0/1:10,3:0.23:13
chrX	119510144	rs3213723	C	G	865.77	.	AC=2;AF=1.00;AN=2;DB;DP=28;set=Intersection	GT:AD:AF:DP	1/1:0,28:1.00:28
chrX	119510456	rs3213724	G	C	67.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.344;ClippingRankSum=0.000;DB;DP=42;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.61;ReadPosRankSum=-0.674;SOR=0.986;set=HC	GT:AD:AF:DP	0/1:35,7:0.17:42
chrX	119576346	.	C	T	286.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;ClippingRankSum=0.000;DP=106;ExcessHet=3.0103;FS=6.928;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.76;ReadPosRankSum=0.660;SOR=1.528;set=HC	GT:AD:AF:DP	0/1:82,22:0.21:104
chrX	119590533	rs12097	T	A	131.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;ClippingRankSum=0.000;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.76;ReadPosRankSum=-1.521;SOR=0.656;set=HC	GT:AD:AF:DP	0/1:25,10:0.29:35
chrX	119759978	rs55959759	C	T	289.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.430;ClippingRankSum=0.000;DB;DP=97;ExcessHet=3.0103;FS=1.181;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.99;ReadPosRankSum=-1.553;SOR=0.428;set=HC	GT:AD:AF:DP	0/1:76,21:0.22:97
chrX	119760042	rs142004998	T	C	608.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.104;ClippingRankSum=0.000;DB;DP=311;ExcessHet=3.0103;FS=3.467;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.96;ReadPosRankSum=0.692;SOR=0.990;set=HC	GT:AD:AF:DP	0/1:254,56:0.18:310
chrX	119972052	rs5903581	C	CT	134.74	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599;ClippingRankSum=0.000;DB;DP=30;ExcessHet=3.0103;FS=2.884;MLEAC=1;MLEAF=0.500;MQ=60.36;MQRankSum=0.775;QD=7.93;ReadPosRankSum=0.422;SOR=0.160;set=HC	GT:AD:AF:DP	0/1:5,12:0.71:17
chrX	120008979	rs871733	T	C	39.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.368;ClippingRankSum=0.000;DB;DP=53;ExcessHet=3.0103;FS=3.526;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.75;ReadPosRankSum=-2.455;SOR=1.029;set=HC	GT:AD:AF:DP	0/1:45,8:0.15:53
chrX	120009216	rs200177933	C	T	1547.77	.	AC=1;AF=0.500;AN=2;DB;DP=85;set=Intersection	GT:AD:AF:DP	0/1:15,70:0.82:85
chrX	120009231	.	TTCC	T	263.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;ClippingRankSum=0.000;DP=72;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=59.71;MQRankSum=-0.925;QD=4.25;ReadPosRankSum=-0.919;SOR=1.111;set=HC	GT:AD:AF:DP	0/1:50,12:0.19:62
chrX	121376194	rs34950105	G	T	2764.77	.	AC=1;AF=0.500;AN=2;DB;DP=187;set=Intersection	GT:AD:AF:DP	0/1:57,126:0.69:183
chrX	122318386	rs58044961	A	AG	5584.73	.	AC=2;AF=1.00;AN=2;DB;DP=139;set=Intersection	GT:AD:AF:DP	1/1:0,139:1.00:139
chrX	122319917	rs2269551	T	C	2542.77	.	AC=1;AF=0.500;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	0/1:45,116:0.72:161
chrX	122336448	rs2285127	T	C	551.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;set=Intersection	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	122336600	rs11452643	T	TG	2467.73	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,73:1.00:73
chrX	122528803	rs550640	T	C	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=3.808;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.25;ReadPosRankSum=-0.875;SOR=0.199;set=HC	GT:AD:AF:DP	0/1:30,9:0.23:39
chrX	122537277	rs502434	T	C	967.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;ClippingRankSum=0.000;DB;DP=188;ExcessHet=3.0103;FS=1.223;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.15;ReadPosRankSum=-0.188;SOR=0.580;set=HC	GT:AD:AF:DP	0/1:128,60:0.32:188
chrX	122537418	rs504096	C	T	494.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.028;ClippingRankSum=0.000;DB;DP=133;ExcessHet=3.0103;FS=5.086;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.325;SOR=1.247;set=HC	GT:AD:AF:DP	0/1:100,33:0.25:133
chrX	122758529	rs2072914	G	A	4085.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,150:1.00:150
chrX	122765750	rs3764750	T	C	2213.77	.	AC=2;AF=1.00;AN=2;DB;DP=76;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	122805421	rs2105889	C	A	1923.77	.	AC=2;AF=1.00;AN=2;DB;DP=71;set=Intersection	GT:AD:AF:DP	1/1:0,71:1.00:71
chrX	123040729	rs28382739	C	T	348.77	.	AC=2;AF=1.00;AN=2;DB;DP=12;set=Intersection	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	123041043	rs28382740	A	G	2957.77	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,111:1.00:111
chrX	123195035	rs2297651	A	C	3810.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.84;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,142:1.00:142
chrX	123498355	.	C	A	27	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=2;HapScore=4;MGOF=10;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=27;QD=30.8856062736;SC=ATTATTGAAGCGATACAGTTT;SbPval=0.68;Source=Platypus;TC=14;TCF=8;TCR=6;TR=2;WE=123498370;WS=123498345;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chrX	123538802	.	TAAACAAAC	T	10741.73	.	AC=2;AF=1.00;AN=2;DP=299;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chrX	123554105	rs141516847	T	C	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=57;set=Intersection	GT:AD:AF:DP	0/1:18,39:0.68:57
chrX	123556622	rs5911838	C	T	1010.77	.	AC=1;AF=0.500;AN=2;DB;DP=51;set=Intersection	GT:AD:AF:DP	0/1:12,39:0.76:51
chrX	123587110	rs2223416	C	A	3852.77	.	AC=2;AF=1.00;AN=2;DB;DP=144;set=Intersection	GT:AD:AF:DP	1/1:0,141:1.00:141
chrX	123615545	rs10656532	G	GTATATA	504.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303;ClippingRankSum=0.000;DB;DP=18;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=28.04;ReadPosRankSum=0.914;SOR=0.859;set=HC	GT:AD:AF:DP	0/1:2,16:0.89:18
chrX	123630790	rs3788774	G	A	369.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:8,14:0.64:22
chrX	123654641	rs370102872	TAAA	T	513.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,16:1.00:16
chrX	123699462	rs142765142	C	T	1658.77	.	AC=1;AF=0.500;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	0/1:22,71:0.76:93
chrX	123775860	.	G	A	402.77	.	AC=1;AF=0.500;AN=2;DP=93;set=Intersection	GT:AD:AF:DP	0/1:65,27:0.29:92
chrX	124097564	rs143307335	T	C	505.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341;ClippingRankSum=0.000;DB;DP=200;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.54;ReadPosRankSum=0.378;SOR=0.676;set=HC	GT:AD:AF:DP	0/1:155,44:0.22:199
chrX	125299932	.	AGCG	A	310.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;ClippingRankSum=0.000;DP=94;ExcessHet=3.0103;FS=1.376;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.76;ReadPosRankSum=-0.516;SOR=0.408;set=HC	GT:AD:AF:DP	0/1:35,11:0.24:46
chrX	125954753	rs41309538	C	T	8384.77	.	AC=2;AF=1.00;AN=2;DB;DP=317;set=Intersection	GT:AD:AF:DP	1/1:0,315:1.00:315
chrX	125955644	rs2269776	A	T	697.77	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:0,25:1.00:25
chrX	127184993	rs732182	C	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;ClippingRankSum=0.000;DB;DP=47;ExcessHet=3.0103;FS=6.009;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=0.014;SOR=0.162;set=HC	GT:AD:AF:DP	0/1:35,12:0.26:47
chrX	128625869	rs2274093	T	C	211.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175;ClippingRankSum=0.000;DB;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.58;ReadPosRankSum=-1.708;SOR=0.617;set=HC	GT:AD:AF:DP	0/1:110,24:0.18:134
chrX	128627159	rs12835315	A	C	1035.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206;ClippingRankSum=0.000;DB;DP=70;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=15.23;ReadPosRankSum=1.701;SOR=0.781;set=HC	GT:AD:AF:DP	0/1:17,51:0.75:68
chrX	128630976	rs201352836	GCA	G	221.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.504;ClippingRankSum=0.000;DB;DP=45;ExcessHet=3.0103;FS=1.779;MLEAC=1;MLEAF=0.500;MQ=61.19;MQRankSum=3.388;QD=5.69;ReadPosRankSum=-2.856;SOR=0.303;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chrX	128633627	rs6634747	T	C	88.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.076;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=1.348;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.37;ReadPosRankSum=0.544;SOR=1.138;set=HC	GT:AD:AF:DP	0/1:54,11:0.17:65
chrX	128674631	.	T	TG	582.74	.	AC=1;AF=0.500;AN=2;DP=29;set=Intersection	GT:AD:AF:DP	0/1:3,25:0.89:28
chrX	128885571	rs5932673	A	G	1090.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;ClippingRankSum=-0.000;DB;DP=55;ExcessHet=3.0103;FS=3.802;MLEAC=2;MLEAF=1.000;MQ=59.83;MQRankSum=1.434;QD=22.72;ReadPosRankSum=1.935;SOR=2.419;set=HC	GT:AD:AF:DP	1/1:5,43:0.90:48
chrX	128925015	rs140642583	G	A	3188.77	.	AC=1;AF=0.500;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	0/1:40,135:0.77:175
chrX	128925156	rs5932684	T	G	446.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:6,17:0.74:23
chrX	128948893	rs5932686	T	C	1164.77	.	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.12;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,40:1.00:40
chrX	128957640	rs2275605	T	C	6570.77	.	AC=2;AF=1.00;AN=2;DB;DP=256;set=Intersection	GT:AD:AF:DP	1/1:0,255:1.00:255
chrX	129045656	rs2273021	T	C	165.77	.	AC=1;AF=0.500;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	0/1:16,9:0.36:25
chrX	129058737	rs2281277	A	C	716.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.492;ClippingRankSum=0.000;DB;DP=299;ExcessHet=3.0103;FS=0.532;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=0.774;SOR=0.764;set=HC	GT:AD:AF:DP	0/1:239,60:0.20:299
chrX	129058882	rs2281278	T	C	692.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.107;ClippingRankSum=0.000;DB;DP=209;ExcessHet=3.0103;FS=1.281;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.35;ReadPosRankSum=-0.522;SOR=0.803;set=HC	GT:AD:AF:DP	0/1:159,48:0.23:207
chrX	129147079	rs4830173	T	C	11856.77	.	AC=2;AF=1.00;AN=2;DB;DP=433;set=Intersection	GT:AD:AF:DP	1/1:0,430:1.00:430
chrX	129267464	.	TA	T	125.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.290;ClippingRankSum=0.000;DP=128;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.951;SOR=0.738;set=HC	GT:AD:AF:DP	0/1:66,24:0.27:90
chrX	129269980	rs209998	G	A	1583.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=98;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.16;ReadPosRankSum=0.367;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:28,70:0.71:98
chrX	129279287	rs141662856	T	C	136.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=5.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.51;ReadPosRankSum=-0.414;SOR=0.184;set=HC	GT:AD:AF:DP	0/1:27,12:0.31:39
chrX	129283520	rs1139851	A	G	3943.77	.	AC=1;AF=0.500;AN=2;DB;DP=233;set=Intersection	GT:AD:AF:DP	0/1:54,178:0.77:232
chrX	129290699	rs189994	T	C	432.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,14:1.00:14
chrX	129349295	rs209238	T	G	1897.77	.	AC=1;AF=0.500;AN=2;DB;DP=111;set=Intersection	GT:AD:AF:DP	0/1:25,85:0.77:110
chrX	129354240	rs1160681	C	A	364.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:1,10:0.91:11
chrX	129354254	rs3081123	TAA	T	525.84	.	AC=1;AF=0.500;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	0/1:1,16:0.94:17
chrX	129498836	rs2235800	T	A	367.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249;ClippingRankSum=0.000;DB;DP=101;ExcessHet=3.0103;FS=3.565;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.68;ReadPosRankSum=0.758;SOR=1.245;set=HC	GT:AD:AF:DP	0/1:76,24:0.24:100
chrX	129505761	rs5930404	C	T	179.77	.	AC=1;AF=0.500;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	0/1:14,9:0.39:23
chrX	129506685	rs7057748	C	T	55.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=3.633;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.787;QD=1.47;ReadPosRankSum=1.876;SOR=0.242;set=HC	GT:AD:AF:DP	0/1:30,8:0.21:38
chrX	129506779	rs5932752	G	A	101.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;ClippingRankSum=0.000;DB;DP=90;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.14;ReadPosRankSum=0.401;SOR=0.757;set=HC	GT:AD:AF:DP	0/1:75,14:0.16:89
chrX	129519491	rs138533082	G	A	1118.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:18,45:0.71:63
chrX	129751476	.	TTTTCTTTCTTTCTTTCTTTC	T	1409.73	.	AC=2;AF=1.00;AN=2;DP=40;set=Intersection	GT:AD:AF:DP	1/1:0,33:1.00:33
chrX	130217020	rs5932835	G	C	1255.77	.	AC=2;AF=1.00;AN=2;DB;DP=47;set=Intersection	GT:AD:AF:DP	1/1:0,47:1.00:47
chrX	130408745	rs6529473	G	A	2772.77	.	AC=1;AF=0.500;AN=2;DB;DP=169;set=Intersection	GT:AD:AF:DP	0/1:52,117:0.69:169
chrX	130412178	rs4524963	C	G	689.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:15,31:0.67:46
chrX	130415635	.	C	T	2012.77	.	AC=1;AF=0.500;AN=2;DP=110;set=Intersection	GT:AD:AF:DP	0/1:26,84:0.76:110
chrX	130415818	rs1128617	T	C	5218.77	.	AC=1;AF=0.500;AN=2;DB;DP=292;set=Intersection	GT:AD:AF:DP	0/1:63,227:0.78:290
chrX	130416958	rs5932877	C	T	9303.77	.	AC=2;AF=1.00;AN=2;DB;DP=350;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chrX	130420006	rs5930458	T	C	2364.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	130420415	rs4495600	T	C	5693.77	.	AC=2;AF=1.00;AN=2;DB;DP=209;set=Intersection	GT:AD:AF:DP	1/1:0,209:1.00:209
chrX	130423359	rs6637829	C	G	735.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698;ClippingRankSum=0.000;DB;DP=228;ExcessHet=3.0103;FS=3.569;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.26;ReadPosRankSum=0.099;SOR=0.680;set=HC	GT:AD:AF:DP	0/1:171,55:0.24:226
chrX	130423543	rs6637830	G	C	9175.77	.	AC=2;AF=1.00;AN=2;DB;DP=338;set=Intersection	GT:AD:AF:DP	1/1:0,337:1.00:337
chrX	130678467	rs499030	A	G	7304.77	.	AC=1;AF=0.500;AN=2;DB;DP=390;set=Intersection	GT:AD:AF:DP	0/1:90,300:0.77:390
chrX	130678596	rs17316625	C	G	10567.77	.	AC=1;AF=0.500;AN=2;DB;DP=584;set=Intersection	GT:AD:AF:DP	0/1:140,443:0.76:583
chrX	130678844	rs655415	A	C	7627.77	.	AC=1;AF=0.500;AN=2;DB;DP=393;set=Intersection	GT:AD:AF:DP	0/1:75,317:0.81:392
chrX	131203438	.	CATATAT	C	153.37	.	AC=2;AF=1.00;AN=2;BaseQRankSum=1.383;ClippingRankSum=-0.000;DP=6;ExcessHet=3.0103;FS=4.771;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=-0.000;QD=25.56;ReadPosRankSum=1.383;SOR=1.872;set=HC	GT:AD:AF:DP	1/1:1,5:0.83:6
chrX	131208056	rs191761697	A	G	169.77	.	AC=1;AF=0.500;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	0/1:18,8:0.31:26
chrX	131228172	.	A	G	737.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127;ClippingRankSum=0.000;DP=263;ExcessHet=3.0103;FS=0.550;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.82;ReadPosRankSum=0.716;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:203,59:0.23:262
chrX	131231430	.	TAC	T	199.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;ClippingRankSum=0.000;DP=66;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.77;ReadPosRankSum=-0.543;SOR=0.553;set=HC	GT:AD:AF:DP	0/1:41,12:0.23:53
chrX	131233588	.	CT	C	48.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.111;ClippingRankSum=0.000;DP=61;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.02;ReadPosRankSum=0.879;SOR=0.511;set=HC	GT:AD:AF:DP	0/1:36,12:0.25:48
chrX	131803352	.	ATC	A	60	.	AC=1;AF=0.500;AN=2;BRF=0.26;FR=0.5000;HP=1;HapScore=2;MGOF=2;MMLQ=28;MQ=60.0;NF=1;NR=1;PP=60;QD=32.5;SC=CCCCTGGCCAATCTCTCTCTC;SbPval=0.27;Source=Platypus;TC=14;TCF=2;TCR=12;TR=2;WE=131803361;WS=131803342;set=Platypus	GT:AD:AF:DP	1/0:12,2:0.14:14
chrX	132437337	rs1048369	G	A	2758.77	.	AC=1;AF=0.500;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	0/1:33,112:0.77:145
chrX	132438872	rs1129980	C	A	1684.77	.	AC=1;AF=0.500;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	0/1:16,75:0.82:91
chrX	132549013	rs2073288	G	A	1832.77	.	AC=1;AF=0.500;AN=2;DB;DP=88;set=Intersection	GT:AD:AF:DP	0/1:16,72:0.82:88
chrX	132888207	.	TAA	T	98.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.453;ClippingRankSum=0.000;DP=67;ExcessHet=3.0103;FS=5.673;MLEAC=1;MLEAF=0.500;MQ=60.16;MQRankSum=-0.488;QD=2.24;ReadPosRankSum=-0.350;SOR=0.177;set=HC	GT:AD:AF:DP	0/1:34,10:0.23:44
chrX	133379551	rs2428577	C	T	8468.77	.	AC=2;AF=1.00;AN=2;DB;DP=316;set=Intersection	GT:AD:AF:DP	1/1:0,314:1.00:314
chrX	133511988	rs5978001	G	A	421.77	.	AC=2;AF=1.00;AN=2;DB;DP=15;set=Intersection	GT:AD:AF:DP	1/1:0,15:1.00:15
chrX	133528116	rs6529627	A	C	46.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=1.976;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.51;ReadPosRankSum=0.126;SOR=0.293;set=HC	GT:AD:AF:DP	0/1:25,6:0.19:31
chrX	133594186	rs193054558	C	G	167.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;ClippingRankSum=0.000;DB;DP=115;ExcessHet=3.0103;FS=3.271;MLEAC=1;MLEAF=0.500;MQ=60.09;MQRankSum=-0.441;QD=1.48;ReadPosRankSum=-2.014;SOR=1.099;set=HC	GT:AD:AF:DP	0/1:93,20:0.18:113
chrX	133680547	rs757309	G	A	288.78	.	AC=1;AF=0.500;AN=2;DB;DP=14;set=Intersection	GT:AD:AF:DP	0/1:2,12:0.86:14
chrX	133699960	rs1982	T	G	87.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.500;ClippingRankSum=0.000;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.03;ReadPosRankSum=-0.699;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:22,7:0.24:29
chrX	133921640	.	CT	C	31.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.124;ClippingRankSum=0.000;DP=71;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.32;ReadPosRankSum=-0.179;SOR=0.917;set=HC	GT:AD:AF:DP	0/1:15,9:0.38:24
chrX	133941766	rs143181255	G	A	1214.77	.	AC=1;AF=0.500;AN=2;DB;DP=61;set=Intersection	GT:AD:AF:DP	0/1:10,49:0.83:59
chrX	134025421	.	G	GA	379.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.337;ClippingRankSum=0.000;DP=56;ExcessHet=3.0103;FS=1.677;MLEAC=1;MLEAF=0.500;MQ=60.39;MQRankSum=0.927;QD=7.30;ReadPosRankSum=-1.365;SOR=0.418;set=HC	GT:AD:AF:DP	0/1:20,32:0.62:52
chrX	134025744	rs6529648	A	G	210.77	.	AC=1;AF=0.500;AN=2;DB;DP=65;set=Intersection	GT:AD:AF:DP	0/1:50,15:0.23:65
chrX	134125475	rs11739	C	G	788.77	.	AC=2;AF=1.00;AN=2;DB;DP=27;set=Intersection	GT:AD:AF:DP	1/1:0,27:1.00:27
chrX	134156121	rs2475853	G	C	4592.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,175:1.00:175
chrX	134185997	rs2498776	T	A	2972.77	.	AC=2;AF=1.00;AN=2;DB;DP=103;set=Intersection	GT:AD:AF:DP	1/1:0,103:1.00:103
chrX	134427640	rs5978119	C	G	731.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.285;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.549;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.93;ReadPosRankSum=-1.220;SOR=0.751;set=HC	GT:AD:AF:DP	0/1:192,58:0.23:250
chrX	134494512	rs45461393	T	C	1084.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;ClippingRankSum=0.000;DB;DP=302;ExcessHet=3.0103;FS=2.236;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.60;ReadPosRankSum=-0.410;SOR=0.849;set=HC	GT:AD:AF:DP	0/1:225,76:0.25:301
chrX	134703108	rs1937729	T	G	120.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	134708007	rs72290283	C	CT	121.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048;ClippingRankSum=0.000;DB;DP=148;ExcessHet=3.0103;FS=3.472;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.21;ReadPosRankSum=1.052;SOR=0.368;set=HC	GT:AD:AF:DP	0/1:79,22:0.22:101
chrX	134713855	rs2298301	G	A	1041.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.260;ClippingRankSum=0.000;DB;DP=295;ExcessHet=3.0103;FS=5.500;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=0.764;SOR=0.989;set=HC	GT:AD:AF:DP	0/1:222,72:0.24:294
chrX	134715274	rs3737330	G	A	246.77	.	AC=1;AF=0.500;AN=2;DB;DP=11;set=Intersection	GT:AD:AF:DP	0/1:2,9:0.82:11
chrX	134948034	rs2034920	A	G	2971.77	.	AC=2;AF=1.00;AN=2;DB;DP=105;set=Intersection	GT:AD:AF:DP	1/1:0,105:1.00:105
chrX	135055694	rs6635201	T	C	1568.77	.	AC=2;AF=1.00;AN=2;DB;DP=49;set=Intersection	GT:AD:AF:DP	1/1:0,49:1.00:49
chrX	135056299	rs5974575	G	A	332.77	.	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.63;QD=27.73;SOR=1.445;set=HC	GT:AD:AF:DP	1/1:0,12:1.00:12
chrX	135080623	rs370833071	C	CT	1073.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.190;ClippingRankSum=0.000;DB;DP=89;ExcessHet=3.0103;FS=1.074;MLEAC=1;MLEAF=0.500;MQ=60.12;MQRankSum=0.558;QD=12.63;ReadPosRankSum=-0.138;SOR=0.892;set=HC	GT:AD:AF:DP	0/1:19,66:0.78:85
chrX	135252234	rs3215593	AC	A	3805.73	.	AC=2;AF=1.00;AN=2;DB;DP=112;set=Intersection	GT:AD:AF:DP	1/1:0,107:1.00:107
chrX	135290250	rs2236003	G	A	601.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:6,24:0.80:30
chrX	135292022	rs2076705	C	T	703.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.057;ClippingRankSum=0.000;DB;DP=38;ExcessHet=3.0103;FS=1.719;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.52;ReadPosRankSum=1.429;SOR=1.308;set=HC	GT:AD:AF:DP	0/1:10,28:0.74:38
chrX	135307049	rs5929742	G	A	2020.77	.	AC=1;AF=0.500;AN=2;DB;DP=108;set=Intersection	GT:AD:AF:DP	0/1:23,85:0.79:108
chrX	135310785	rs2273221	T	C	3095.77	.	AC=1;AF=0.500;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	0/1:53,142:0.73:195
chrX	135313034	rs1055497	T	G	7685.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.489;ClippingRankSum=0.000;DB;DP=426;ExcessHet=3.0103;FS=0.671;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=18.13;ReadPosRankSum=-2.169;SOR=0.790;set=HC	GT:AD:AF:DP	0/1:83,341:0.80:424
chrX	135313185	rs34471049	CT	C	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.020;ClippingRankSum=0.000;DB;DP=64;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-1.061;SOR=0.984;set=HC	GT:AD:AF:DP	0/1:30,12:0.29:42
chrX	135322440	rs5975706	A	T	497.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:4,20:0.83:24
chrX	135323452	rs5975707	G	A	1765.77	.	AC=1;AF=0.500;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	0/1:16,75:0.82:91
chrX	135338312	rs5975709	C	T	930.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:9,37:0.80:46
chrX	135390818	rs5930928	T	A	248.77	.	AC=1;AF=0.500;AN=2;DB;DP=41;set=Intersection	GT:AD:AF:DP	0/1:27,14:0.34:41
chrX	135426693	rs4829829	A	G	1243.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.372;ClippingRankSum=0.000;DB;DP=334;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.72;ReadPosRankSum=-0.542;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:252,82:0.25:334
chrX	135426968	rs5930931	C	A	764.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;ClippingRankSum=0.000;DB;DP=321;ExcessHet=3.0103;FS=13.289;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.38;ReadPosRankSum=-0.129;SOR=1.441;set=HC	GT:AD:AF:DP	0/1:258,63:0.20:321
chrX	135429503	rs4829830	C	A	1154.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;ClippingRankSum=0.000;DB;DP=346;ExcessHet=3.0103;FS=0.973;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.36;ReadPosRankSum=2.912;SOR=0.783;set=HC	GT:AD:AF:DP	0/1:263,81:0.24:344
chrX	135430044	rs877761	T	C	2106.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.770;ClippingRankSum=0.000;DB;DP=615;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.43;ReadPosRankSum=-1.085;SOR=0.737;set=HC	GT:AD:AF:DP	0/1:462,152:0.25:614
chrX	135430483	rs912002	T	C	1702.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.465;ClippingRankSum=0.000;DB;DP=486;ExcessHet=3.0103;FS=0.613;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.54;ReadPosRankSum=1.579;SOR=0.741;set=HC	GT:AD:AF:DP	0/1:366,115:0.24:481
chrX	135431236	rs5930932	T	C	1809.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=2.076;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.56;ReadPosRankSum=0.445;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:388,121:0.24:509
chrX	135431358	rs5930933	C	T	1916.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.507;ClippingRankSum=0.000;DB;DP=803;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.40;ReadPosRankSum=-0.715;SOR=0.742;set=HC	GT:AD:AF:DP	0/1:639,161:0.20:800
chrX	135435475	rs5903915	AT	A	88.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.546;ClippingRankSum=0.000;DB;DP=83;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.674;SOR=0.828;set=HC	GT:AD:AF:DP	0/1:62,17:0.22:79
chrX	135474420	rs1329546	C	A	360.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.670;ClippingRankSum=0.000;DB;DP=310;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.16;ReadPosRankSum=0.669;SOR=0.696;set=HC	GT:AD:AF:DP	0/1:260,50:0.16:310
chrX	135474444	rs34255702	AGAT	A	1567.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;ClippingRankSum=0.000;DB;DP=384;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.16;ReadPosRankSum=0.619;SOR=0.728;set=HC	GT:AD:AF:DP	0/1:316,61:0.16:377
chrX	135480126	rs5974595	T	C	1045.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;ClippingRankSum=0.000;DB;DP=261;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.01;ReadPosRankSum=-0.913;SOR=0.692;set=HC	GT:AD:AF:DP	0/1:190,71:0.27:261
chrX	135481956	.	T	TA	36.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;ClippingRankSum=0.000;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.81;MQRankSum=3.320;QD=0.97;ReadPosRankSum=-1.989;SOR=0.582;set=HC	GT:AD:AF:DP	0/1:28,10:0.26:38
chrX	135496398	rs5930942	G	A	838.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186;ClippingRankSum=0.000;DB;DP=316;ExcessHet=3.0103;FS=0.492;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.65;ReadPosRankSum=-1.280;SOR=0.732;set=HC	GT:AD:AF:DP	0/1:246,70:0.22:316
chrX	135572193	rs140873258	G	A	1635.79	.	AC=1;AF=0.500;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	0/1:9,66:0.88:75
chrX	135572223	rs3030366	A	ACT	313.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.647;ClippingRankSum=0.000;DB;DP=112;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.80;ReadPosRankSum=-1.435;SOR=0.733;set=HC	GT:AD:AF:DP	0/1:96,16:0.14:112
chrX	135730555	rs1126535	T	C	2538.77	.	AC=1;AF=0.500;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	0/1:21,104:0.83:125
chrX	135819719	rs561435	C	G	483.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.555;ClippingRankSum=0.000;DB;DP=34;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.32;MQRankSum=0.550;QD=14.66;ReadPosRankSum=1.755;SOR=1.101;set=HC	GT:AD:AF:DP	0/1:6,27:0.82:33
chrX	135956506	rs77794331	C	G	1316.77	.	AC=1;AF=0.500;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	0/1:133,75:0.36:208
chrX	135956571	.	T	TGG	186.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.473;ClippingRankSum=0.000;DP=88;ExcessHet=3.0103;FS=3.052;MLEAC=1;MLEAF=0.500;MQ=58.40;MQRankSum=-7.465;QD=2.20;ReadPosRankSum=-2.345;SOR=1.214;set=HC	GT:AD:AF:DP	0/1:74,11:0.13:85
chrX	135956575	rs78646793	G	A	189.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.188;ClippingRankSum=0.000;DB;DP=84;ExcessHet=3.0103;FS=3.613;MLEAC=1;MLEAF=0.500;MQ=58.56;MQRankSum=-9.080;QD=2.26;ReadPosRankSum=-2.231;SOR=1.639;set=HC	GT:AD:AF:DP	0/1:75,9:0.11:84
chrX	135961585	.	A	AT	58.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540;ClippingRankSum=0.000;DP=144;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=0.000;QD=0.46;ReadPosRankSum=1.255;SOR=0.583;set=HC	GT:AD:AF:DP	0/1:102,25:0.20:127
chrX	135961587	rs2011584	G	T	2036.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;ClippingRankSum=0.000;DB;DP=144;ExcessHet=3.0103;FS=0.815;MLEAC=1;MLEAF=0.500;MQ=59.84;MQRankSum=-1.002;QD=15.67;ReadPosRankSum=-1.002;SOR=0.600;set=HC	GT:AD:AF:DP	0/1:26,104:0.80:130
chrX	136113464	rs1190736	C	A	5359.77	.	AC=2;AF=1.00;AN=2;DB;DP=196;set=Intersection	GT:AD:AF:DP	1/1:0,195:1.00:195
chrX	137749997	rs5976185	A	T	704.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	138067202	rs34825181	A	G	9632.77	.	AC=2;AF=1.00;AN=2;DB;DP=365;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.54;SOR=1.086;set=HC	GT:AD:AF:DP	1/1:0,363:1.00:363
chrX	138067368	rs5974786	G	A	4712.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,169:1.00:169
chrX	138633280	rs6048	A	G	4713.77	.	AC=1;AF=0.500;AN=2;DB;DP=279;set=Intersection	GT:AD:AF:DP	0/1:72,203:0.74:275
chrX	138670026	.	TCA	T	22	.	AC=1;AF=0.500;AN=2;BRF=0.14;FR=0.4995;HP=2;HapScore=2;MGOF=4;MMLQ=23;MQ=60.0;NF=0;NR=1;PP=22;QD=26.0;SC=TTTCTCTCTCTCACACACACA;SbPval=1.0;Source=Platypus;TC=9;TCF=0;TCR=9;TR=1;WE=138670035;WS=138670016;set=Platypus	GT:AD:AF:DP	0/1:8,1:0.11:9
chrX	138724725	rs926563	G	A	4032.77	.	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.71;SOR=0.818;set=HC	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	138724841	.	G	GA	148.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.510;ClippingRankSum=0.000;DP=36;ExcessHet=3.0103;FS=6.897;MLEAC=1;MLEAF=0.500;MQ=60.30;MQRankSum=1.004;QD=5.51;ReadPosRankSum=-1.289;SOR=0.105;set=HC	GT:AD:AF:DP	0/1:15,12:0.44:27
chrX	138774209	rs4824861	C	T	4882.77	.	AC=2;AF=1.00;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	1/1:0,186:1.00:186
chrX	138811003	rs2094702	G	A	2632.77	.	AC=2;AF=1.00;AN=2;DB;DP=102;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	138825675	rs1268015	T	C	489.77	.	AC=2;AF=1.00;AN=2;DB;DP=18;set=Intersection	GT:AD:AF:DP	1/1:0,18:1.00:18
chrX	138869368	rs17281983	T	C	358.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167;ClippingRankSum=0.000;DB;DP=119;ExcessHet=3.0103;FS=0.800;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=0.041;SOR=0.587;set=HC	GT:AD:AF:DP	0/1:90,29:0.24:119
chrX	138882028	rs57605669	T	C	250.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245;ClippingRankSum=0.000;DB;DP=39;ExcessHet=3.0103;FS=8.506;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.43;ReadPosRankSum=0.790;SOR=0.109;set=HC	GT:AD:AF:DP	0/1:24,15:0.38:39
chrX	138882172	rs10717380	AC	A	1226.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.144;ClippingRankSum=0.000;DB;DP=141;ExcessHet=3.0103;FS=6.056;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.86;ReadPosRankSum=1.671;SOR=0.228;set=HC	GT:AD:AF:DP	0/1:38,75:0.66:113
chrX	138897130	rs2491014	A	C	1771.77	.	AC=2;AF=1.00;AN=2;DB;DP=68;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	139038443	rs5955139	G	A	811.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199;ClippingRankSum=0.000;DB;DP=389;ExcessHet=3.0103;FS=0.982;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.09;ReadPosRankSum=1.195;SOR=0.776;set=HC	GT:AD:AF:DP	0/1:314,75:0.19:389
chrX	139038968	rs5953892	G	A	194.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chrX	139099429	rs5907565	T	G	2552.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	139099699	rs5909001	C	T	655.77	.	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=56.55;QD=31.23;SOR=1.508;set=HC	GT:AD:AF:DP	1/1:0,21:1.00:21
chrX	139099828	rs5909002	T	A	4288.77	.	AC=2;AF=1.00;AN=2;DB;DP=164;set=Intersection	GT:AD:AF:DP	1/1:0,164:1.00:164
chrX	139298295	rs396467	C	T	3612.77	.	AC=1;AF=0.500;AN=2;DB;DP=566;set=Intersection	GT:AD:AF:DP	0/1:359,205:0.36:564
chrX	139298612	rs411420	T	C	350.77	.	AC=1;AF=0.500;AN=2;DB;DP=95;set=Intersection	GT:AD:AF:DP	0/1:69,25:0.27:94
chrX	140008385	rs5907732	G	T	2152.77	.	AC=1;AF=0.500;AN=2;DB;DP=120;set=Intersection	GT:AD:AF:DP	0/1:23,96:0.81:119
chrX	140008515	rs5907733	C	T	583.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:5,23:0.82:28
chrX	140271268	rs2038375	G	C	3379.77	.	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=28.16;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,120:1.00:120
chrX	140714231	rs2239834	A	G	433.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923;ClippingRankSum=0.000;DB;DP=229;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=0.376;SOR=0.682;set=HC	GT:AD:AF:DP	0/1:181,46:0.20:227
chrX	140714251	rs2239835	A	G	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043;ClippingRankSum=0.000;DB;DP=216;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.70;ReadPosRankSum=1.252;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:173,41:0.19:214
chrX	140714769	rs2239837	A	G	1575.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440;ClippingRankSum=0.000;DB;DP=151;ExcessHet=3.0103;FS=1.422;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=10.58;ReadPosRankSum=0.009;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:102,47:0.32:149
chrX	140714777	rs2239838	G	C	1550.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.998;ClippingRankSum=0.000;DB;DP=143;ExcessHet=3.0103;FS=1.450;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=11.00;ReadPosRankSum=-0.890;SOR=0.548;set=HC	GT:AD:AF:DP	0/1:96,45:0.32:141
chrX	140953078	rs1120947	A	G	121.77	.	AC=1;AF=0.500;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	0/1:2,5:0.71:7
chrX	140953094	rs192927980	T	C	147.77	.	AC=1;AF=0.500;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	0/1:2,7:0.78:9
chrX	140966895	rs73577987	G	A	188.80	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	140966946	rs73577990	T	C	324.77	.	AC=1;AF=0.500;AN=2;DB;DP=19;set=Intersection	GT:AD:AF:DP	0/1:4,15:0.79:19
chrX	140983031	rs176023	A	G	3585.77	.	AC=2;AF=1.00;AN=2;DB;DP=137;set=Intersection	GT:AD:AF:DP	1/1:0,137:1.00:137
chrX	140983064	rs176024	G	A	5379.77	.	AC=2;AF=1.00;AN=2;DB;DP=202;set=Intersection	GT:AD:AF:DP	1/1:0,202:1.00:202
chrX	140983127	rs176026	G	A	7771.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	140993150	rs5953637	T	C	1878.77	.	AC=1;AF=0.500;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	0/1:24,65:0.73:89
chrX	140993912	.	C	T	2962	.	AC=1;AF=0.500;AN=2;BRF=0.28;FR=0.5000;HP=1;HapScore=1;MGOF=29;MMLQ=28;MQ=52.58;NF=136;NR=116;PP=2962;QD=20;SC=AGCCCCTCCTCCTCCTCCACT;SbPval=0.33;Source=Platypus;TC=488;TCF=241;TCR=247;TR=252;WE=140993921;WS=140993895;set=Platypus	GT:AD:AF:DP	0/1:236,252:0.52:488
chrX	140994031	.	G	C	2962	.	AC=1;AF=0.500;AN=2;BRF=0.38;FR=0.5000;HP=1;HapScore=1;MGOF=30;MMLQ=26;MQ=49.56;NF=127;NR=86;PP=2962;QD=20;SC=CTCCACTTTAGTGAGTCTTTT;SbPval=0.61;Source=Platypus;TC=349;TCF=201;TCR=148;TR=213;WE=140994039;WS=140994021;set=Platypus	GT:AD:AF:DP	1/0:136,213:0.61:349
chrX	140994050	.	CCC	TCT	2944	.	AC=1;AF=0.500;AN=2;BRF=0.35;FR=0.5000;HP=3;HapScore=1;MGOF=18;MMLQ=28;MQ=50.65;NF=144;NR=103;PP=2944;QD=20;SC=TTCCAGAGTTCCCCTGAGAGA;SbPval=0.64;Source=Platypus;TC=422;TCF=237;TCR=185;TR=247;WE=140994060;WS=140994040;set=Platypus	GT:AD:AF:DP	0/1:175,247:0.59:422
chrX	140994424	rs200293020	A	G	2349.77	.	AC=1;AF=0.500;AN=2;DB;DP=371;set=Intersection	GT:AD:AF:DP	0/1:171,77:0.31:248
chrX	140994428	rs201520870	C	G	2072.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=6.074;ClippingRankSum=0.000;DB;DP=350;ExcessHet=3.0103;FS=7.783;MLEAC=1;MLEAF=0.500;MQ=58.93;MQRankSum=-7.280;QD=9.13;ReadPosRankSum=-9.608;SOR=1.241;set=HC	GT:AD:AF:DP	0/1:170,57:0.25:227
chrX	140994434	.	CCTT	C	834.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.510;ClippingRankSum=0.000;DP=325;ExcessHet=3.0103;FS=8.257;MLEAC=1;MLEAF=0.500;MQ=59.20;MQRankSum=-6.792;QD=4.13;ReadPosRankSum=-7.311;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:175,27:0.13:202
chrX	140994887	rs58318084	A	G	2319.77	.	AC=1;AF=0.500;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	0/1:25,101:0.80:126
chrX	140995939	rs147852270	C	T	3298.77	.	AC=1;AF=0.500;AN=2;DB;DP=190;set=Intersection	GT:AD:AF:DP	0/1:49,140:0.74:189
chrX	141290865	rs3765272	C	T	3214.77	.	AC=1;AF=0.500;AN=2;DB;DP=186;set=Intersection	GT:AD:AF:DP	0/1:48,137:0.74:185
chrX	142121729	rs4825148	T	C	2124.77	.	AC=2;AF=1.00;AN=2;DB;DP=77;set=Intersection	GT:AD:AF:DP	1/1:0,76:1.00:76
chrX	142121808	.	CAGA	C	1181.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.12;ReadPosRankSum=0.325;SOR=0.698;set=HC	GT:AD:AF:DP	0/1:153,40:0.21:193
chrX	142122058	rs62601929	T	G	1598.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	142795225	rs3859898	G	A	10115.77	.	AC=2;AF=1.00;AN=2;DB;DP=378;set=Intersection	GT:AD:AF:DP	1/1:0,377:1.00:377
chrX	142803571	rs851092	A	G	901.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	142967468	rs237520	T	G	5992.77	.	AC=2;AF=1.00;AN=2;DB;DP=210;set=Intersection	GT:AD:AF:DP	1/1:1,209:1.00:210
chrX	144904882	rs2748588	T	C	8977.77	.	AC=2;AF=1.00;AN=2;DB;DP=324;set=Intersection	GT:AD:AF:DP	1/1:0,321:1.00:321
chrX	146993567	.	CGCGGCG	C	55.52	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=27.76;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,2:1.00:2
chrX	147003564	rs1270092	T	C	1353.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	147014960	rs4824232	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.52;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,36:1.00:36
chrX	147015021	rs4824233	C	T	931.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	147019192	rs25700	G	A	438.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:11,19:0.63:30
chrX	147026330	rs11293471	AC	A	526.73	.	AC=2;AF=1.00;AN=2;DB;DP=17;set=Intersection	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	147088249	rs764631	C	T	4678.77	.	AC=1;AF=0.500;AN=2;DB;DP=303;set=Intersection	GT:AD:AF:DP	0/1:90,211:0.70:301
chrX	147733265	rs5904246	G	GA	1683.73	.	AC=2;AF=1.00;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	1/1:0,48:1.00:48
chrX	147800748	rs241084	A	G	2982.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;ClippingRankSum=0.000;DB;DP=178;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.85;ReadPosRankSum=0.127;SOR=0.673;set=HC	GT:AD:AF:DP	0/1:39,138:0.78:177
chrX	147891558	rs11117555	T	C	790.77	.	AC=2;AF=1.00;AN=2;DB;DP=26;set=Intersection	GT:AD:AF:DP	1/1:0,26:1.00:26
chrX	147919063	rs375432534	CAGTTA	C	2472.73	.	AC=2;AF=1.00;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrX	147967552	rs41299108	G	T	247.77	.	AC=1;AF=0.500;AN=2;DB;DP=55;set=Intersection	GT:AD:AF:DP	0/1:39,15:0.28:54
chrX	148035344	rs10608807	GAC	G	145.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;ClippingRankSum=0.000;DB;DP=129;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.08;MQRankSum=2.252;QD=1.58;ReadPosRankSum=0.177;SOR=0.575;set=HC	GT:AD:AF:DP	0/1:78,14:0.15:92
chrX	148037055	rs16994868	G	C	2165.77	.	AC=2;AF=1.00;AN=2;DB;DP=75;set=Intersection	GT:AD:AF:DP	1/1:0,75:1.00:75
chrX	148048207	rs111499310	CTT	C	1099.73	.	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;QD=23.40;SOR=2.899;set=HC	GT:AD:AF:DP	1/1:3,44:0.94:47
chrX	148055144	rs5980615	A	G	4012.77	.	AC=2;AF=1.00;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	1/1:0,151:1.00:151
chrX	148062377	rs12688573	G	A	2061.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	148062498	rs5936462	C	G	265.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;set=Intersection	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	148582699	rs74514769	A	AG	5792.73	.	AC=2;AF=1.00;AN=2;DB;DP=161;set=Intersection	GT:AD:AF:DP	1/1:0,157:1.00:157
chrX	148615475	rs375507084	A	G	77.28	.	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=37.81;QD=25.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrX	148615539	rs376352823	C	T	103.03	.	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=38.37;QD=25.76;SOR=3.258;set=HC	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	148615567	.	T	TAGG	412.74	.	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=39.28;QD=45.86;SOR=4.615;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	148619842	rs374287912	AG	A	1387.73	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	148622730	rs3747443	G	A	1755.77	.	AC=2;AF=1.00;AN=2;DB;DP=67;set=Intersection	GT:AD:AF:DP	1/1:0,67:1.00:67
chrX	148622745	rs3747442	T	A	2139.77	.	AC=2;AF=1.00;AN=2;DB;DP=81;set=Intersection	GT:AD:AF:DP	1/1:0,81:1.00:81
chrX	148627384	rs145921071	A	G	2736.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=42.64;QD=29.75;SOR=1.216;set=HC	GT:AD:AF:DP	1/1:0,92:1.00:92
chrX	148628490	.	A	T	1589.77	.	AC=2;AF=1.00;AN=2;DP=57;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=46.34;QD=27.89;SOR=0.800;set=HC	GT:AD:AF:DP	1/1:0,57:1.00:57
chrX	148681163	.	T	C	32.78	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;ClippingRankSum=-0.000;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=45.00;MQRankSum=-0.000;QD=10.93;ReadPosRankSum=-0.000;SOR=1.179;set=HC	GT:AD:AF:DP	0/1:1,2:0.67:3
chrX	148685623	rs5936308	G	C	738.77	.	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.47;SOR=1.071;set=HC	GT:AD:AF:DP	1/1:0,29:1.00:29
chrX	149013071	rs150164908	C	T	514.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.160;ClippingRankSum=0.000;DB;DP=171;ExcessHet=3.0103;FS=2.276;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.01;ReadPosRankSum=-0.230;SOR=0.703;set=HC	GT:AD:AF:DP	0/1:131,40:0.23:171
chrX	149013727	rs5983916	A	G	13140.77	.	AC=2;AF=1.00;AN=2;DB;DP=513;set=Intersection	GT:AD:AF:DP	1/1:2,509:1.00:511
chrX	149098349	.	A	AAGT	5049.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.932;ClippingRankSum=0.000;DP=198;ExcessHet=3.0103;FS=3.189;MLEAC=1;MLEAF=0.500;MQ=47.07;MQRankSum=-6.202;QD=29.02;ReadPosRankSum=-0.901;SOR=0.994;set=HC	GT:AD:AF:DP	0/1:46,128:0.74:174
chrX	149114389	.	G	A	42.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.744;ClippingRankSum=-0.000;DP=11;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=40.00;MQRankSum=-0.000;QD=3.89;ReadPosRankSum=0.038;SOR=0.180;set=HC	GT:AD:AF:DP	0/1:8,3:0.27:11
chrX	149613617	rs6526057	T	C	1038.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	149630848	rs507156	T	C	134.90	.	AC=2;AF=1.00;AN=2;DB;DP=5;set=Intersection	GT:AD:AF:DP	1/1:0,5:1.00:5
chrX	149637925	rs35043335	C	CTG	183.73	.	AC=1;AF=0.500;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	0/1:4,8:0.67:12
chrX	149680221	rs659188	G	C	2816.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,104:1.00:104
chrX	149680554	rs2070779	C	T	15395.77	.	AC=2;AF=1.00;AN=2;DB;DP=575;set=Intersection	GT:AD:AF:DP	1/1:0,573:1.00:573
chrX	149826503	rs222410	G	A	1455.77	.	AC=1;AF=0.500;AN=2;DB;DP=96;set=Intersection	GT:AD:AF:DP	0/1:33,62:0.65:95
chrX	149862214	rs222346	A	C	179.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;set=Intersection	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	149887054	.	TC	T	115.77	.	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=16.54;SOR=4.174;set=HC	GT:AD:AF:DP	1/1:0,7:1.00:7
chrX	149895603	rs75451888	A	AAT	1975.73	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:40,85:0.68:125
chrX	149896019	rs3747313	G	A	561.77	.	AC=1;AF=0.500;AN=2;DB;DP=32;set=Intersection	GT:AD:AF:DP	0/1:9,22:0.71:31
chrX	149931106	rs16995747	C	T	4658.77	.	AC=2;AF=1.00;AN=2;DB;DP=175;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chrX	149937404	rs41311690	T	C	149.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495;ClippingRankSum=0.000;DB;DP=65;ExcessHet=3.0103;FS=2.673;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.30;ReadPosRankSum=-0.892;SOR=0.363;set=HC	GT:AD:AF:DP	0/1:51,14:0.22:65
chrX	149961994	.	A	G	1221.77	.	AC=1;AF=0.500;AN=2;DP=61;set=Intersection	GT:AD:AF:DP	0/1:15,45:0.75:60
chrX	150336814	rs644345	G	A	1698.77	.	AC=2;AF=1.00;AN=2;DB;DP=59;set=Intersection	GT:AD:AF:DP	1/1:0,59:1.00:59
chrX	150348228	rs1202874	C	T	3086.77	.	AC=2;AF=1.00;AN=2;DB;DP=118;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	150349557	rs68058591	CCACCACTGGCCA	C	38338.73	.	AC=2;AF=1.00;AN=2;DB;DP=898;set=Intersection	GT:AD:AF:DP	1/1:0,869:1.00:869
chrX	150349649	rs561077	A	G	30007.77	.	AC=2;AF=1.00;AN=2;DB;DP=1140;set=Intersection	GT:AD:AF:DP	1/1:2,1136:1.00:1138
chrX	150349871	rs13440581	A	G	10255.77	.	AC=2;AF=1.00;AN=2;DB;DP=376;set=Intersection	GT:AD:AF:DP	1/1:0,376:1.00:376
chrX	150565330	rs176451	G	C	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;ClippingRankSum=0.000;DB;DP=510;ExcessHet=3.0103;FS=2.867;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.998;SOR=0.704;set=HC	GT:AD:AF:DP	0/1:376,133:0.26:509
chrX	150573322	.	G	GT	152.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;ClippingRankSum=0.000;DP=84;ExcessHet=3.0103;FS=5.428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.89;ReadPosRankSum=-0.202;SOR=1.476;set=HC	GT:AD:AF:DP	0/1:61,20:0.25:81
chrX	150789334	rs5904324	T	TA	2956.73	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	150789950	rs945815	C	T	918.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	150816952	rs12845316	A	G	653.77	.	AC=1;AF=0.500;AN=2;DB;DP=29;set=Intersection	GT:AD:AF:DP	0/1:5,24:0.83:29
chrX	150817220	rs62609303	G	A	2483.77	.	AC=1;AF=0.500;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:31,111:0.78:142
chrX	150840597	rs7886849	G	A	941.77	.	AC=1;AF=0.500;AN=2;DB;DP=44;set=Intersection	GT:AD:AF:DP	0/1:8,36:0.82:44
chrX	150840916	rs41299110	C	T	2322.77	.	AC=1;AF=0.500;AN=2;DB;DP=148;set=Intersection	GT:AD:AF:DP	0/1:44,104:0.70:148
chrX	150867387	rs41304962	A	T	1623.77	.	AC=1;AF=0.500;AN=2;DB;DP=83;set=Intersection	GT:AD:AF:DP	0/1:15,67:0.82:82
chrX	150869267	rs4323608	A	G	1594.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.204;ClippingRankSum=0.000;DB;DP=392;ExcessHet=3.0103;FS=2.508;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.08;ReadPosRankSum=0.655;SOR=0.838;set=HC	GT:AD:AF:DP	0/1:292,99:0.25:391
chrX	150873651	rs3761541	G	T	138.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:35,10:0.22:45
chrX	150911512	.	GT	AC	405	.	AC=1;AF=0.500;AN=2;BRF=0.17;FR=0.5274;HP=2;HapScore=2;MGOF=2;MMLQ=23;MQ=58.41;NF=13;NR=0;PP=405;QD=35.2667596048;SC=ACATATATATGTATATATATA;SbPval=1.0;Source=Platypus;TC=15;TCF=14;TCR=1;TR=13;WE=150911521;WS=150911502;set=Platypus	GT:AD:AF:DP	1/0:2,13:0.87:15
chrX	151092126	rs1047246	C	G	8091.77	.	AC=2;AF=1.00;AN=2;DB;DP=295;set=Intersection	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	151092220	rs1047248	A	G	5601.77	.	AC=2;AF=1.00;AN=2;DB;DP=203;set=Intersection	GT:AD:AF:DP	1/1:0,203:1.00:203
chrX	151092653	rs1047251	G	A	8585.77	.	AC=2;AF=1.00;AN=2;DB;DP=320;set=Intersection	GT:AD:AF:DP	1/1:0,319:1.00:319
chrX	151092784	rs61746135	C	T	1566.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.341;ClippingRankSum=0.000;DB;DP=503;ExcessHet=3.0103;FS=2.127;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.12;ReadPosRankSum=0.307;SOR=0.761;set=HC	GT:AD:AF:DP	0/1:385,117:0.23:502
chrX	151125971	rs763539	A	G	2240.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.861;ClippingRankSum=0.000;DB;DP=142;ExcessHet=3.0103;FS=2.540;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.01;ReadPosRankSum=0.262;SOR=0.490;set=HC	GT:AD:AF:DP	0/1:34,106:0.76:140
chrX	151129822	rs2256882	G	A	1271.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:9,56:0.86:65
chrX	151138179	rs1139916	A	C	2755.77	.	AC=2;AF=1.00;AN=2;DB;DP=110;set=Intersection	GT:AD:AF:DP	1/1:0,110:1.00:110
chrX	151142982	rs7341952	G	T	6142.77	.	AC=2;AF=1.00;AN=2;DB;DP=229;set=Intersection	GT:AD:AF:DP	1/1:0,227:1.00:227
chrX	151303393	rs210586	C	T	8189.77	.	AC=2;AF=1.00;AN=2;DB;DP=297;set=Intersection	GT:AD:AF:DP	1/1:0,296:1.00:296
chrX	151303596	rs210585	C	T	12651.77	.	AC=2;AF=1.00;AN=2;DB;DP=477;set=Intersection	GT:AD:AF:DP	1/1:0,475:1.00:475
chrX	151337092	rs145701879	C	A	292.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.104;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=5.32;ReadPosRankSum=-0.307;SOR=0.520;set=HC	GT:AD:AF:DP	0/1:38,17:0.31:55
chrX	151358195	rs140051848	A	G	554.77	.	AC=1;AF=0.500;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	0/1:7,23:0.77:30
chrX	151560868	rs5970292	G	A	7146.77	.	AC=2;AF=1.00;AN=2;DB;DP=271;set=Intersection	GT:AD:AF:DP	1/1:0,270:1.00:270
chrX	151899760	rs2515830	A	G	4359.77	.	AC=2;AF=1.00;AN=2;DB;DP=147;set=Intersection	GT:AD:AF:DP	1/1:0,144:1.00:144
chrX	151899789	rs3005	G	A	7136.77	.	AC=2;AF=1.00;AN=2;DB;DP=265;set=Intersection	GT:AD:AF:DP	1/1:0,261:1.00:261
chrX	151899818	rs2233056	C	T	11024.77	.	AC=2;AF=1.00;AN=2;DB;DP=405;set=Intersection	GT:AD:AF:DP	1/1:0,402:1.00:402
chrX	151899913	rs2233055	T	C	3130.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.029;ClippingRankSum=0.000;DB;DP=952;ExcessHet=3.0103;FS=1.298;MLEAC=1;MLEAF=0.500;MQ=59.97;MQRankSum=0.797;QD=3.30;ReadPosRankSum=-0.092;SOR=0.836;set=HC	GT:AD:AF:DP	0/1:722,228:0.24:950
chrX	151904488	rs2515838	C	A	2615.77	.	AC=2;AF=1.00;AN=2;DB;DP=97;set=Intersection	GT:AD:AF:DP	1/1:0,97:1.00:97
chrX	151904609	rs2471781	T	C	6488.77	.	AC=2;AF=1.00;AN=2;DB;DP=242;set=Intersection	GT:AD:AF:DP	1/1:0,242:1.00:242
chrX	151908844	rs1894359	AC	TG	6659.77	.	AC=1;AF=0.500;AN=2;DB;DP=204;JOINED;set=Intersection	GT:AD:AF:DP	0/1:43,161:0.79:204
chrX	151909156	rs2515848	A	G	9472.77	.	AC=1;AF=0.500;AN=2;DB;DP=571;set=Intersection	GT:AD:AF:DP	0/1:150,420:0.74:570
chrX	151935150	.	G	C	4273.77	.	AC=1;AF=0.500;AN=2;DP=227;set=Intersection	GT:AD:AF:DP	0/1:50,175:0.78:225
chrX	151935417	.	G	C	16268.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.058;ClippingRankSum=0.000;DP=523;ExcessHet=3.0103;FS=2.154;MLEAC=1;MLEAF=0.500;MQ=57.43;MQRankSum=-6.523;QD=31.17;ReadPosRankSum=0.126;SOR=0.539;set=HC	GT:AD:AF:DP	0/1:118,404:0.77:522
chrX	151935422	.	G	C	16074.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.682;ClippingRankSum=0.000;DP=504;ExcessHet=3.0103;FS=2.141;MLEAC=1;MLEAF=0.500;MQ=57.29;MQRankSum=-6.608;QD=31.96;ReadPosRankSum=-0.215;SOR=0.525;set=HC	GT:AD:AF:DP	0/1:113,390:0.78:503
chrX	152018832	rs5969919	T	G	1158.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.75;SOR=0.829;set=HC	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	152083006	rs6526140	G	C	7972.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.692;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.05;ReadPosRankSum=0.265;SOR=0.684;set=HC	GT:AD:AF:DP	0/1:105,201:0.66:306
chrX	152083012	rs6526141	G	A	7892.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;ClippingRankSum=0.000;DB;DP=303;ExcessHet=3.0103;FS=0.921;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=26.05;ReadPosRankSum=-0.171;SOR=0.631;set=HC	GT:AD:AF:DP	0/1:104,199:0.66:303
chrX	152083059	rs6526142	G	A	2889.77	.	AC=1;AF=0.500;AN=2;DB;DP=207;set=Intersection	GT:AD:AF:DP	0/1:73,134:0.65:207
chrX	152083089	rs6526143	T	G	2304.77	.	AC=1;AF=0.500;AN=2;DB;DP=152;set=Intersection	GT:AD:AF:DP	0/1:50,101:0.67:151
chrX	152086580	rs56268527	G	A	3601.77	.	AC=1;AF=0.500;AN=2;DB;DP=231;set=Intersection	GT:AD:AF:DP	0/1:74,157:0.68:231
chrX	152087420	rs16996799	C	T	985.77	.	AC=1;AF=0.500;AN=2;DB;DP=58;set=Intersection	GT:AD:AF:DP	0/1:17,41:0.71:58
chrX	152087569	.	CGAG	C	400.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;ClippingRankSum=0.000;DP=253;ExcessHet=3.0103;FS=1.701;MLEAC=1;MLEAF=0.500;MQ=60.17;MQRankSum=5.395;QD=1.89;ReadPosRankSum=-1.153;SOR=0.968;set=HC	GT:AD:AF:DP	0/1:186,26:0.12:212
chrX	152091153	rs2071261	A	C	2903.77	.	AC=1;AF=0.500;AN=2;DB;DP=177;set=Intersection	GT:AD:AF:DP	0/1:49,127:0.72:176
chrX	152134160	rs2071250	A	G	307.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:28,16:0.36:44
chrX	152135575	rs12008598	G	T	93.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.156;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.91;ReadPosRankSum=-0.342;SOR=0.846;set=HC	GT:AD:AF:DP	0/1:39,10:0.20:49
chrX	152137822	rs5925266	C	T	202.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.946;ClippingRankSum=0.000;DB;DP=28;ExcessHet=3.0103;FS=2.634;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.24;ReadPosRankSum=1.500;SOR=1.781;set=HC	GT:AD:AF:DP	0/1:21,7:0.25:28
chrX	152137827	rs5925267	A	G	193.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=4.212;ClippingRankSum=0.000;DB;DP=31;ExcessHet=3.0103;FS=2.599;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.25;ReadPosRankSum=1.990;SOR=1.532;set=HC	GT:AD:AF:DP	0/1:24,7:0.23:31
chrX	152138068	rs5925268	C	T	1865.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.863;ClippingRankSum=0.000;DB;DP=270;ExcessHet=3.0103;FS=0.525;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.91;ReadPosRankSum=1.419;SOR=0.643;set=HC	GT:AD:AF:DP	0/1:207,63:0.23:270
chrX	152138078	rs2071253	C	T	1845.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.470;ClippingRankSum=0.000;DB;DP=250;ExcessHet=3.0103;FS=0.546;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.38;ReadPosRankSum=1.135;SOR=0.640;set=HC	GT:AD:AF:DP	0/1:191,59:0.24:250
chrX	152225379	rs73244173	C	A	620.74	.	AC=2;AF=1.00;AN=2;DB;DP=25;set=Intersection	GT:AD:AF:DP	1/1:2,23:0.92:25
chrX	152226542	rs6526155	T	C	6128.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;set=Intersection	GT:AD:AF:DP	1/1:0,230:1.00:230
chrX	152609450	rs3213462	T	C	228.77	.	AC=1;AF=0.500;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	0/1:41,14:0.25:55
chrX	152609668	rs3213463	T	C	654.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.425;ClippingRankSum=0.000;DB;DP=193;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.41;ReadPosRankSum=0.373;SOR=0.674;set=HC	GT:AD:AF:DP	0/1:148,44:0.23:192
chrX	152610051	rs1467880	A	T	115.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.975;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=1.352;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.27;ReadPosRankSum=-1.242;SOR=0.416;set=HC	GT:AD:AF:DP	0/1:40,11:0.22:51
chrX	152610108	rs1467881	G	C	224.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.052;ClippingRankSum=0.000;DB;DP=127;ExcessHet=3.0103;FS=0.850;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.81;ReadPosRankSum=0.668;SOR=0.578;set=HC	GT:AD:AF:DP	0/1:100,24:0.19:124
chrX	152610224	rs35024993	CGTGACCTCT	C	1026.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;ClippingRankSum=0.000;DB;DP=145;ExcessHet=3.0103;FS=7.858;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=7.33;ReadPosRankSum=0.837;SOR=0.625;set=HC	GT:AD:AF:DP	0/1:107,33:0.24:140
chrX	152610294	rs1467882	A	G	212.77	.	AC=1;AF=0.500;AN=2;DB;DP=48;set=Intersection	GT:AD:AF:DP	0/1:35,13:0.27:48
chrX	152610947	rs3213465	T	C	231.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329;ClippingRankSum=0.000;DB;DP=92;ExcessHet=3.0103;FS=2.054;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.52;ReadPosRankSum=-0.865;SOR=0.626;set=HC	GT:AD:AF:DP	0/1:71,21:0.23:92
chrX	152613112	rs7066295	C	T	1190.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;ClippingRankSum=0.000;DB;DP=678;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.76;ReadPosRankSum=0.784;SOR=0.727;set=HC	GT:AD:AF:DP	0/1:560,116:0.17:676
chrX	152719969	rs371637396	GGGGA	G	688.73	.	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.22;QD=40.51;SOR=5.784;set=HC	GT:AD:AF:DP	1/1:0,17:1.00:17
chrX	152720579	rs3752409	G	A	2122.77	.	AC=1;AF=0.500;AN=2;DB;DP=133;set=Intersection	GT:AD:AF:DP	0/1:38,94:0.71:132
chrX	152728003	rs3020967	T	C	2114.77	.	AC=2;AF=1.00;AN=2;DB;DP=72;set=Intersection	GT:AD:AF:DP	1/1:0,72:1.00:72
chrX	152770230	rs4833	G	A	9363.77	.	AC=1;AF=0.500;AN=2;DB;DP=579;set=Intersection	GT:AD:AF:DP	0/1:165,414:0.72:579
chrX	152770378	rs55857706	G	A	708.77	.	AC=1;AF=0.500;AN=2;DB;DP=183;set=Intersection	GT:AD:AF:DP	0/1:136,46:0.25:182
chrX	152770402	rs2980053	A	G	3417.77	.	AC=2;AF=1.00;AN=2;DB;DP=116;set=Intersection	GT:AD:AF:DP	1/1:0,116:1.00:116
chrX	152771214	rs11363938	GA	G	1406.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:0,39:1.00:39
chrX	152771509	rs1126499	C	T	1346.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;ClippingRankSum=0.000;DB;DP=362;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.75;ReadPosRankSum=1.275;SOR=0.691;set=HC	GT:AD:AF:DP	0/1:268,91:0.25:359
chrX	152807425	rs762733	G	A	2216.77	.	AC=2;AF=1.00;AN=2;DB;DP=91;set=Intersection	GT:AD:AF:DP	1/1:0,83:1.00:83
chrX	152807665	rs2980012	A	G	3017.77	.	AC=2;AF=1.00;AN=2;DB;DP=93;set=Intersection	GT:AD:AF:DP	1/1:0,93:1.00:93
chrX	152807923	rs2980013	G	C	10027.77	.	AC=2;AF=1.00;AN=2;DB;DP=388;set=Intersection	GT:AD:AF:DP	1/1:0,388:1.00:388
chrX	152814373	rs2285034	T	C	135.77	.	AC=1;AF=0.500;AN=2;DB;DP=24;set=Intersection	GT:AD:AF:DP	0/1:16,8:0.33:24
chrX	152815089	rs3020949	A	G	22932.77	.	AC=2;AF=1.00;AN=2;DB;DP=881;set=Intersection	GT:AD:AF:DP	1/1:0,878:1.00:878
chrX	152815886	rs2285035	C	T	920.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:2,35:0.95:37
chrX	152818435	rs2239682	G	A	13900.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;ClippingRankSum=0.000;DB;DP=861;ExcessHet=3.0103;FS=0.593;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=16.18;ReadPosRankSum=-0.710;SOR=0.618;set=HC	GT:AD:AF:DP	0/1:227,632:0.74:859
chrX	152821887	rs3020957	C	T	2543.77	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,91:1.00:91
chrX	152823450	.	G	A	1431.77	.	AC=1;AF=0.500;AN=2;DP=74;set=Intersection	GT:AD:AF:DP	0/1:19,55:0.74:74
chrX	152823728	rs2269415	G	C	6312.77	.	AC=1;AF=0.500;AN=2;DB;DP=342;set=Intersection	GT:AD:AF:DP	0/1:74,268:0.78:342
chrX	152825414	rs3020959	G	T	6510.77	.	AC=2;AF=1.00;AN=2;DB;DP=261;set=Intersection	GT:AD:AF:DP	1/1:1,259:1.00:260
chrX	152825433	rs2980018	A	G	5420.77	.	AC=2;AF=1.00;AN=2;DB;DP=197;set=Intersection	GT:AD:AF:DP	1/1:0,197:1.00:197
chrX	152830322	rs4243536	A	G	4244.77	.	AC=2;AF=1.00;AN=2;DB;DP=165;set=Intersection	GT:AD:AF:DP	1/1:0,165:1.00:165
chrX	152834736	rs6643626	T	C	2806.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;ClippingRankSum=0.000;DB;DP=163;ExcessHet=3.0103;FS=0.697;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.33;ReadPosRankSum=1.812;SOR=0.729;set=HC	GT:AD:AF:DP	0/1:37,125:0.77:162
chrX	152834891	rs6643736	G	C	478.77	.	AC=1;AF=0.500;AN=2;DB;DP=22;set=Intersection	GT:AD:AF:DP	0/1:5,17:0.77:22
chrX	152864477	rs199537978	G	GC	215.75	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.03;QD=26.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	152864513	rs200645137	G	GC	280.74	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=57.37;QD=31.19;SOR=0.892;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	152909047	rs72616448	G	C	416.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;ClippingRankSum=0.000;DB;DP=135;ExcessHet=3.0103;FS=0.785;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.11;ReadPosRankSum=-0.273;SOR=0.839;set=HC	GT:AD:AF:DP	0/1:102,32:0.24:134
chrX	152913814	rs7882888	C	A	38.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.119;ClippingRankSum=0.000;DB;DP=67;ExcessHet=3.0103;FS=1.318;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=0.59;ReadPosRankSum=0.121;SOR=0.454;set=HC	GT:AD:AF:DP	0/1:56,10:0.15:66
chrX	152914603	rs7883986	C	T	352.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=2.391;ClippingRankSum=0.000;DB;DP=120;ExcessHet=3.0103;FS=3.010;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.96;ReadPosRankSum=-0.413;SOR=1.035;set=HC	GT:AD:AF:DP	0/1:93,26:0.22:119
chrX	152938409	.	TACAC	T	3254.73	.	AC=1;AF=0.500;AN=2;DP=543;set=Intersection	GT:AD:AF:DP	0/1:237,117:0.33:354
chrX	152938450	rs5987127	G	A	2230.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690;ClippingRankSum=0.000;DB;DP=541;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=4.19;ReadPosRankSum=-0.559;SOR=0.695;set=HC	GT:AD:AF:DP	0/1:392,141:0.26:533
chrX	152939728	rs5987128	C	T	2275.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.484;ClippingRankSum=0.000;DB;DP=706;ExcessHet=3.0103;FS=1.336;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.24;ReadPosRankSum=-0.228;SOR=0.835;set=HC	GT:AD:AF:DP	0/1:538,165:0.23:703
chrX	152954025	rs384573	A	G	1201.77	.	AC=2;AF=1.00;AN=2;DB;DP=43;set=Intersection	GT:AD:AF:DP	1/1:0,43:1.00:43
chrX	152954317	rs192387453	T	C	362.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;ClippingRankSum=0.000;DB;DP=136;ExcessHet=3.0103;FS=4.150;MLEAC=1;MLEAF=0.500;MQ=59.99;MQRankSum=-1.937;QD=2.69;ReadPosRankSum=-0.265;SOR=1.144;set=HC	GT:AD:AF:DP	0/1:107,28:0.21:135
chrX	152957656	rs199498083	C	CA	1744.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.760;ClippingRankSum=0.000;DB;DP=202;ExcessHet=3.0103;FS=0.561;MLEAC=1;MLEAF=0.500;MQ=59.66;MQRankSum=0.905;QD=9.09;ReadPosRankSum=-0.872;SOR=0.632;set=HC	GT:AD:AF:DP	0/1:128,64:0.33:192
chrX	152959078	rs2071028	G	A	160.77	.	AC=1;AF=0.500;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	0/1:36,10:0.22:46
chrX	152989467	rs199815952	T	TTG	2367.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391;ClippingRankSum=0.000;DB;DP=409;ExcessHet=3.0103;FS=0.458;MLEAC=1;MLEAF=0.500;MQ=60.03;MQRankSum=1.969;QD=6.10;ReadPosRankSum=1.280;SOR=0.748;set=HC	GT:AD:AF:DP	0/1:308,80:0.21:388
chrX	152989470	rs184707396	C	A	2349.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;ClippingRankSum=0.000;DB;DP=388;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=6.09;ReadPosRankSum=1.764;SOR=0.693;set=HC	GT:AD:AF:DP	0/1:310,76:0.20:386
chrX	152990663	rs4148030	C	T	100.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.995;ClippingRankSum=0.000;DB;DP=56;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.83;ReadPosRankSum=-0.123;SOR=0.409;set=HC	GT:AD:AF:DP	0/1:45,10:0.18:55
chrX	153005605	rs41314153	G	A	1502.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;ClippingRankSum=0.000;DB;DP=414;ExcessHet=3.0103;FS=1.274;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.63;ReadPosRankSum=0.122;SOR=0.812;set=HC	GT:AD:AF:DP	0/1:310,104:0.25:414
chrX	153005844	rs142496200	G	A	215.77	.	AC=1;AF=0.500;AN=2;DB;DP=53;set=Intersection	GT:AD:AF:DP	0/1:39,14:0.26:53
chrX	153008911	rs4898368	C	T	136.84	.	AC=2;AF=1.00;AN=2;DB;DP=7;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	153009197	rs2229539	G	C	910.77	.	AC=2;AF=1.00;AN=2;DB;DP=35;set=Intersection	GT:AD:AF:DP	1/1:0,35:1.00:35
chrX	153034752	rs2266877	C	T	68.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.051;ClippingRankSum=0.000;DB;DP=49;ExcessHet=3.0103;FS=1.783;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.40;ReadPosRankSum=-0.875;SOR=1.061;set=HC	GT:AD:AF:DP	0/1:41,8:0.16:49
chrX	153035798	rs2266879	G	A	9565.77	.	AC=2;AF=1.00;AN=2;DB;DP=363;set=Intersection	GT:AD:AF:DP	1/1:0,361:1.00:361
chrX	153037275	rs6643644	C	T	1339.77	.	AC=2;AF=1.00;AN=2;DB;DP=50;set=Intersection	GT:AD:AF:DP	1/1:0,50:1.00:50
chrX	153037594	rs11156607	C	G	7891.77	.	AC=2;AF=1.00;AN=2;DB;DP=278;set=Intersection	GT:AD:AF:DP	1/1:0,278:1.00:278
chrX	153037808	rs2266882	G	A	8144.77	.	AC=2;AF=1.00;AN=2;DB;DP=300;set=Intersection	GT:AD:AF:DP	1/1:0,299:1.00:299
chrX	153037999	rs2266883	G	C	822.77	.	AC=2;AF=1.00;AN=2;DB;DP=30;set=Intersection	GT:AD:AF:DP	1/1:0,30:1.00:30
chrX	153038516	rs5945161	C	G	2989.77	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,106:1.00:106
chrX	153038661	rs2266885	G	C	4784.77	.	AC=2;AF=1.00;AN=2;DB;DP=173;set=Intersection	GT:AD:AF:DP	1/1:0,173:1.00:173
chrX	153039502	rs6643791	G	C	11952.77	.	AC=2;AF=1.00;AN=2;DB;DP=462;set=Intersection	GT:AD:AF:DP	1/1:0,457:1.00:457
chrX	153039615	rs1543781	A	G	9368.77	.	AC=2;AF=1.00;AN=2;DB;DP=352;set=Intersection	GT:AD:AF:DP	1/1:0,350:1.00:350
chrX	153041544	rs5987155	T	C	6462.77	.	AC=2;AF=1.00;AN=2;DB;DP=246;MQ=60.04;set=Intersection	GT:AD:AF:DP	1/1:0,244:1.00:244
chrX	153042237	rs1894294	G	A	411.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=21.67;SOR=4.514;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	153042419	rs34966902	G	A	6057.77	.	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=26.34;SOR=0.922;set=HC	GT:AD:AF:DP	1/1:0,230:1.00:230
chrX	153043919	.	T	A	1282.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100;ClippingRankSum=0.000;DP=373;ExcessHet=3.0103;FS=3.979;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.45;ReadPosRankSum=-0.280;SOR=0.860;set=HC	GT:AD:AF:DP	0/1:282,90:0.24:372
chrX	153047809	rs1981439	A	G	1449.77	.	AC=2;AF=1.00;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	1/1:0,45:1.00:45
chrX	153048647	rs201302475	GT	G	6947.73	.	AC=2;AF=1.00;AN=2;DB;DP=191;set=Intersection	GT:AD:AF:DP	1/1:0,174:1.00:174
chrX	153048656	rs201877372	CA	C	350.73	.	AC=1;AF=0.500;ALERT;AN=2;BaseQRankSum=-0.136;ClippingRankSum=0.000;DB;DP=155;ExcessHet=3.0103;FS=3.802;MLEAC=1;MLEAF=0.500;MQ=59.81;MQRankSum=0.000;QD=2.70;ReadPosRankSum=-0.115;SOR=0.217;set=HC	GT:AD:AF:DP	0/1:101,29:0.22:130
chrX	153048657	rs2314343	A	C	2375.77	.	AC=1;AF=0.500;ALERT;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	0/1:29,101:0.78:130
chrX	153048674	.	C	T	234.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.566;ClippingRankSum=0.000;DP=120;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=59.75;MQRankSum=0.000;QD=2.12;ReadPosRankSum=-0.115;SOR=0.331;set=HC	GT:AD:AF:DP	0/1:85,26:0.23:111
chrX	153050148	rs41299124	C	T	426.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=3.756;ClippingRankSum=0.000;DB;DP=152;ExcessHet=3.0103;FS=0.912;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=2.85;ReadPosRankSum=0.062;SOR=0.799;set=HC	GT:AD:AF:DP	0/1:121,29:0.19:150
chrX	153052661	rs2269482	A	G	2100.77	.	AC=2;AF=1.00;AN=2;DB;DP=74;set=Intersection	GT:AD:AF:DP	1/1:0,74:1.00:74
chrX	153073752	rs3761532	T	C	6977.77	.	AC=2;AF=1.00;AN=2;DB;DP=254;set=Intersection	GT:AD:AF:DP	1/1:0,254:1.00:254
chrX	153149708	rs77883713	G	GC	6597.73	.	AC=2;AF=1.00;AN=2;DB;DP=151;set=Intersection	GT:AD:AF:DP	1/1:0,148:1.00:148
chrX	153149715	rs6643650	C	G	6406.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	153151277	rs56026845	C	G	5645.77	.	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=44.45;SOR=0.954;set=HC	GT:AD:AF:DP	1/1:0,127:1.00:127
chrX	153151280	rs143464562	G	GCC	5771.73	.	AC=2;AF=1.00;AN=2;DB;DP=128;set=Intersection	GT:AD:AF:DP	1/1:0,128:1.00:128
chrX	153151284	rs199975679	GT	G	5632.73	.	AC=2;AF=1.00;AN=2;DB;DP=124;set=Intersection	GT:AD:AF:DP	1/1:0,124:1.00:124
chrX	153151423	rs58566947	G	GCGGC	862.73	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	153151456	rs12837217	T	G	363.78	.	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=40.42;SOR=1.402;set=HC	GT:AD:AF:DP	1/1:0,9:1.00:9
chrX	153151461	rs12837218	T	G	363.78	.	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=45.47;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,8:1.00:8
chrX	153151467	rs199929222	CG	C	154.80	.	AC=2;AF=1.00;AN=2;DB;DP=6;set=Intersection	GT:AD:AF:DP	1/1:0,6:1.00:6
chrX	153151491	rs36095229	GT	G	121	.	AC=2;AF=1.00;AN=2;DB;DP=4;set=Intersection	GT:AD:AF:DP	1/1:0,4:1.00:4
chrX	153170447	rs55712963	G	GC	3165.73	.	AC=2;AF=1.00;AN=2;DB;DP=80;set=Intersection	GT:AD:AF:DP	1/1:0,80:1.00:80
chrX	153170980	rs56689668	T	G	3492.77	.	AC=2;AF=1.00;AN=2;DB;DP=119;set=Intersection	GT:AD:AF:DP	1/1:0,119:1.00:119
chrX	153174819	rs11394527	T	TG	33808.73	.	AC=2;AF=1.00;AN=2;DB;DP=965;set=Intersection	GT:AD:AF:DP	1/1:0,947:1.00:947
chrX	153174867	rs11405331	T	TG	31770.73	.	AC=2;AF=1.00;AN=2;DB;DP=924;set=Intersection	GT:AD:AF:DP	1/1:1,904:1.00:905
chrX	153175053	rs56015121	G	GC	3342.73	.	AC=2;AF=1.00;AN=2;DB;DP=92;set=Intersection	GT:AD:AF:DP	1/1:0,90:1.00:90
chrX	153176254	rs2070097	A	G	1179.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.013;ClippingRankSum=0.000;DB;DP=306;ExcessHet=3.0103;FS=2.206;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.86;ReadPosRankSum=-0.675;SOR=0.544;set=HC	GT:AD:AF:DP	0/1:226,80:0.26:306
chrX	153178459	rs5904376	G	GC	3377.73	.	AC=2;AF=1.00;AN=2;DB;DP=107;set=Intersection	GT:AD:AF:DP	1/1:0,102:1.00:102
chrX	153186412	rs34153599	A	AG	5935.73	.	AC=2;AF=1.00;AN=2;DB;DP=171;set=Intersection	GT:AD:AF:DP	1/1:0,168:1.00:168
chrX	153186484	rs11428457	T	TC	9740.73	.	AC=2;AF=1.00;AN=2;DB;DP=311;set=Intersection	GT:AD:AF:DP	1/1:0,305:1.00:305
chrX	153208197	rs11372702	T	TG	1550.73	.	AC=2;AF=1.00;AN=2;DB;DP=46;set=Intersection	GT:AD:AF:DP	1/1:0,46:1.00:46
chrX	153210179	rs146096296	T	TG	6895.73	.	AC=2;AF=1.00;AN=2;DB;DP=243;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chrX	153210195	.	G	GGC	7332.73	.	AC=2;AF=1.00;AN=2;DP=181;set=Intersection	GT:AD:AF:DP	1/1:0,166:1.00:166
chrX	153210199	rs377619070	GA	G	7188.73	.	AC=2;AF=1.00;AN=2;DB;DP=153;set=Intersection	GT:AD:AF:DP	1/1:0,153:1.00:153
chrX	153215839	rs3027875	G	A	5631.77	.	AC=2;AF=1.00;AN=2;DB;DP=215;set=Intersection	GT:AD:AF:DP	1/1:0,213:1.00:213
chrX	153277889	rs2239673	C	T	593.77	.	AC=2;AF=1.00;AN=2;DB;DP=20;set=Intersection	GT:AD:AF:DP	1/1:0,20:1.00:20
chrX	153278829	rs1059703	G	A	4714.77	.	AC=2;AF=1.00;AN=2;DB;DP=172;set=Intersection	GT:AD:AF:DP	1/1:0,172:1.00:172
chrX	153279822	.	TAAAA	T,TA	2559.73	.	AC=1,1;AF=0.500,0.500;AN=2;DP=126;ExcessHet=3.0103;FS=0.000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=60.09;QD=30.47;SOR=1.781;set=HC	GT:AD:AF:DP	1/2:0,56,28:0.67,0.33:84
chrX	153279858	rs5945174	G	A	1849.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,68:1.00:68
chrX	153284192	rs1059702	A	G	11444.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chrX	153284483	rs1059701	G	A	3831.77	.	AC=2;AF=1.00;AN=2;DB;DP=143;set=Intersection	GT:AD:AF:DP	1/1:0,143:1.00:143
chrX	153416487	rs146138552	C	G	1039.77	.	AC=2;AF=1.00;AN=2;DB;DP=34;MQ=59.86;set=Intersection	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	153420176	rs78093925	A	G	17108.77	.	AC=2;AF=1.00;AN=2;DB;DP=676;set=Intersection	GT:AD:AF:DP	1/1:4,671:0.99:675
chrX	153421912	rs1065439	T	C	16252.77	.	AC=2;AF=1.00;AN=2;DB;DP=606;set=Intersection	GT:AD:AF:DP	1/1:0,605:1.00:605
chrX	153482563	rs138416189	G	C	343.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.372;ClippingRankSum=0.000;DB;DP=51;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=47.25;MQRankSum=-1.165;QD=6.74;ReadPosRankSum=-0.250;SOR=0.502;set=HC	GT:AD:AF:DP	0/1:33,18:0.35:51
chrX	153524158	rs56066989	C	T	205.77	.	AC=1;AF=0.500;AN=2;DB;DP=45;set=Intersection	GT:AD:AF:DP	0/1:33,12:0.27:45
chrX	153577719	rs7063300	G	A	3908.77	.	AC=1;AF=0.500;AN=2;DB;DP=224;set=Intersection	GT:AD:AF:DP	0/1:50,174:0.78:224
chrX	153579889	.	G	T	274.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443;ClippingRankSum=0.000;DP=77;ExcessHet=3.0103;FS=3.990;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=3.57;ReadPosRankSum=1.677;SOR=1.270;set=HC	GT:AD:AF:DP	0/1:58,19:0.25:77
chrX	153629155	rs12012747	A	G	4705.77	.	AC=2;AF=1.00;AN=2;DB;DP=159;set=Intersection	GT:AD:AF:DP	1/1:0,159:1.00:159
chrX	153633359	rs1130929	G	C	10704.77	.	AC=2;AF=1.00;AN=2;DB;DP=417;set=Intersection	GT:AD:AF:DP	1/1:0,415:1.00:415
chrX	153633953	rs1050094	T	C	1129.77	.	AC=2;AF=1.00;AN=2;DB;DP=37;set=Intersection	GT:AD:AF:DP	1/1:0,37:1.00:37
chrX	153637305	rs2070807	T	C	1942.77	.	AC=2;AF=1.00;AN=2;DB;DP=69;set=Intersection	GT:AD:AF:DP	1/1:0,69:1.00:69
chrX	153640406	rs62617809	C	T	9886.77	.	AC=1;AF=0.500;AN=2;DB;DP=597;set=Intersection	GT:AD:AF:DP	0/1:156,437:0.74:593
chrX	153657083	rs28497482	A	G	5499.77	.	AC=2;AF=1.00;AN=2;DB;DP=208;set=Intersection	GT:AD:AF:DP	1/1:0,206:1.00:206
chrX	153660041	rs11156577	C	T	466.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;ClippingRankSum=0.000;DB;DP=26;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=17.95;ReadPosRankSum=0.730;SOR=0.743;set=HC	GT:AD:AF:DP	0/1:6,20:0.77:26
chrX	153668022	rs370252579	CA	C	280	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.560;ClippingRankSum=0.000;DB;DP=24;ExcessHet=3.0103;FS=5.643;MLEAC=2;MLEAF=1.000;MQ=60.00;MQRankSum=0.000;QD=12.73;ReadPosRankSum=0.719;SOR=0.105;set=HC	GT:AD:AF:DP	1/1:3,19:0.86:22
chrX	153668172	rs68141802	A	G	2510.77	.	AC=2;AF=1.00;AN=2;DB;DP=90;set=Intersection	GT:AD:AF:DP	1/1:0,89:1.00:89
chrX	153668232	rs186878348	G	C	2073.77	.	AC=1;AF=0.500;AN=2;DB;DP=130;set=Intersection	GT:AD:AF:DP	0/1:43,85:0.66:128
chrX	153672550	.	CCCG	C	137.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.007;ClippingRankSum=0.000;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.15;ReadPosRankSum=0.028;SOR=0.710;set=HC	GT:AD:AF:DP	0/1:108,12:0.10:120
chrX	153706549	rs41299136	T	C	1231.77	.	AC=1;AF=0.500;AN=2;DB;DP=66;set=Intersection	GT:AD:AF:DP	0/1:17,49:0.74:66
chrX	153714251	rs149580851	C	T	6357.77	.	AC=1;AF=0.500;AN=2;DB;DP=365;set=Intersection	GT:AD:AF:DP	0/1:86,276:0.76:362
chrX	153714811	.	G	A	288.77	.	AC=1;AF=0.500;AN=2;DP=57;set=Intersection	GT:AD:AF:DP	0/1:40,17:0.30:57
chrX	153906377	rs371001859	CA	C	260.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=1.038;ClippingRankSum=0.000;DB;DP=186;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.23;MQRankSum=0.000;QD=1.58;ReadPosRankSum=1.849;SOR=0.746;set=HC	GT:AD:AF:DP	0/1:115,50:0.30:165
chrX	153994596	rs2728532	G	T	3849.77	.	AC=2;AF=1.00;AN=2;DB;DP=145;set=Intersection	GT:AD:AF:DP	1/1:0,145:1.00:145
chrX	154009617	rs11318110	AG	A	991.73	.	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=29.17;SOR=1.244;set=HC	GT:AD:AF:DP	1/1:0,34:1.00:34
chrX	154009644	rs57003686	G	GA	43.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120;ClippingRankSum=0.000;DB;DP=40;ExcessHet=3.0103;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.25;ReadPosRankSum=-1.841;SOR=0.787;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chrX	154013483	rs3215184	A	AC	1010.73	.	AC=2;AF=1.00;AN=2;DB;DP=42;set=Intersection	GT:AD:AF:DP	1/1:1,38:0.97:39
chrX	154020114	rs1126762	C	A	7664.77	.	AC=2;AF=1.00;AN=2;DB;DP=285;set=Intersection	GT:AD:AF:DP	1/1:0,285:1.00:285
chrX	154051891	rs6643620	G	A	3547.77	.	AC=2;AF=1.00;AN=2;DB;DP=125;set=Intersection	GT:AD:AF:DP	1/1:0,125:1.00:125
chrX	154133316	.	C	CA	49.73	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.756;ClippingRankSum=0.000;DP=47;ExcessHet=3.0103;FS=5.509;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=1.42;ReadPosRankSum=0.084;SOR=0.035;set=HC	GT:AD:AF:DP	0/1:26,9:0.26:35
chrX	154456747	rs572013	A	G	7461.77	.	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.29;SOR=0.992;set=HC	GT:AD:AF:DP	1/1:0,295:1.00:295
chrX	154721357	rs150926226	G	C	410.77	.	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=33.00;QD=21.62;SOR=0.793;set=HC	GT:AD:AF:DP	1/1:0,19:1.00:19
chrX	154774663	rs2305517	G	A	632.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrX	154774707	rs2305518	C	T	1516.77	.	AC=2;AF=1.00;AN=2;DB;DP=56;set=Intersection	GT:AD:AF:DP	1/1:0,56:1.00:56
chrY	13309804	rs62599708	C	T	119.84	.	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=40.52;QD=19.97;SOR=0.693;set=HC	GT:AD:AF:DP	1/1:0,6:1.00:6
chrY	14475389	.	G	A	107.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=1.179;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrY	14475392	.	C	T	155.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=31.18;SOR=1.022;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475426	.	C	T	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475428	.	C	T	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475429	.	A	G	196.90	.	AC=2;AF=1.00;ALERT;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475434	.	A	G	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475439	.	G	T	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475442	.	C	T	196.90	.	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=39.38;SOR=3.611;set=HC	GT:AD:AF:DP	1/1:0,5:1.00:5
chrY	14475454	.	G	A	107.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrY	14475460	.	T	C	107.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrY	14475462	.	A	C	107.28	.	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=35.76;SOR=2.833;set=HC	GT:AD:AF:DP	1/1:0,3:1.00:3
chrY	14475464	.	T	G	107.28	.	AC=2;AF=1.00;ALERT;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=107.28;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chrY	14475465	.	C	A	62.74	.	AC=2;AF=1.00;ALERT;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=62.74;SOR=1.609;set=HC	GT:AD:AF:DP	1/1:0,1:1.00:1
chrY	21154323	rs10465459	G	A	645.77	.	AC=2;AF=1.00;AN=2;DB;DP=23;set=Intersection	GT:AD:AF:DP	1/1:0,23:1.00:23
chrY	21154426	rs52812045	G	A	779.77	.	AC=1;AF=0.500;AN=2;BaseQRankSum=-0.682;ClippingRankSum=0.000;DB;DP=55;ExcessHet=3.0103;FS=4.083;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.000;QD=14.18;ReadPosRankSum=-0.878;SOR=0.322;set=HC	GT:AD:AF:DP	0/1:18,37:0.67:55
chrY	21154466	rs10465460	T	A	1174.77	.	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=60.00;QD=25.54;SOR=1.765;set=HC	GT:AD:AF:DP	1/1:0,46:1.00:46
chrY	21154569	rs17855271	A	G	271.77	.	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.000;MQ=58.37;QD=27.18;SOR=2.303;set=HC	GT:AD:AF:DP	1/1:0,10:1.00:10